BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038550
         (423 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/415 (73%), Positives = 359/415 (86%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS R  +AS +F+ I EKNIVSWNAMVANFAQNRLEL A+ LVR+M    E PNSVT
Sbjct: 254 MYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVT 313

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            TNVLPACAR  FLRPGKEIHAR IR G + DLF++NALTDMYAKCGCLNLA+ VF IS 
Sbjct: 314 FTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFKISL 373

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RDEVSYNILI+GYSQT++CSESL LF EM + GMK DVVS+MG ISACANLAA+KQGKE+
Sbjct: 374 RDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEV 433

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG+ +RKHLHTHLF+AN++LDFY + GRIDLA K+F  +P +D+ASWN++ILGYGMLGE+
Sbjct: 434 HGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGEL 493

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             AINLFEAM+EDGV YD VSYIA+L+ACSHGGLVE+GKKYF+ MQ  ++KPT+MHYACM
Sbjct: 494 TIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQNIKPTQMHYACM 553

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           VDLLGRAGL+E+AVKLI++LP+EPDAN+WGALLGACRI+G +EL  WAAEHLF LKPQH 
Sbjct: 554 VDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIELAHWAAEHLFKLKPQHS 613

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           GYY +LSNMYAEAGKWDEA++VR+LMKSR AKKNPGCSWVQ  ++V  FV  +RM
Sbjct: 614 GYYSVLSNMYAEAGKWDEANQVRKLMKSRGAKKNPGCSWVQIDNQVHAFVAGERM 668



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 127/425 (29%), Positives = 210/425 (49%), Gaps = 47/425 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     ++  +F  I+E+N VSWNA++ + A       AL++ R M      PNSVT
Sbjct: 153 VYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVT 212

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +++LP          GKEIH   +R GL  D+F+ NAL DMYAK G    A NVFN I 
Sbjct: 213 FSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIG 272

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N ++  ++Q      ++ L  +M+  G   + V+F   + ACA +  ++ GKE
Sbjct: 273 EKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKE 332

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   IR      LFV+N++ D Y + G ++LA ++F  + ++D  S+N LI+GY     
Sbjct: 333 IHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFK-ISLRDEVSYNILIIGYSQTTN 391

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMH 296
              ++ LF  M   G+  D VSY+ +++AC++   +++GK    E+   +V+    T + 
Sbjct: 392 CSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGK----EVHGLAVRKHLHTHLF 447

Query: 297 YA-CMVDLLGRAGLMEDAVKLIKNLP---------------------------------- 321
            A  ++D   + G ++ A K+ + +P                                  
Sbjct: 448 IANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKEDG 507

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFM--LKPQHCGYYILLSNMYAEAGKWDEA 379
           VE D+  + A+L AC   G VE G    EH+ +  +KP    +Y  + ++   AG  +EA
Sbjct: 508 VEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQNIKPTQM-HYACMVDLLGRAGLIEEA 566

Query: 380 SKVRE 384
            K+ E
Sbjct: 567 VKLIE 571



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 154/281 (54%), Gaps = 2/281 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVT 60
           Y       +   +F  + E+++VSWN+++  F+ +    +A+ L  EM + + F PN V+
Sbjct: 52  YGNCGGLKDVKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVS 111

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VLP CA       G++IH  +++ GL+  + + NAL D+Y KCG +  ++ VF+ IS
Sbjct: 112 IVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEIS 171

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+N +I   +      ++L +F  M   G+K + V+F   +     L     GKE
Sbjct: 172 ERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKE 231

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG ++R  L + +FVAN+++D Y +SGR   A+ +F+ +  K+  SWN ++  +     
Sbjct: 232 IHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRL 291

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
              A++L   M+ DG   + V++  +L AC+  G +  GK+
Sbjct: 292 ELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKE 332



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 2/223 (0%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           T   VL ACA    ++ G+EIH  + + G + D+F+ N L   Y  CG L   + VF+  
Sbjct: 9   TFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVFDEM 68

Query: 120 F-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAAIKQG 177
             RD VS+N +I  +S     +E++ LF EM L  G + ++VS +  +  CA L     G
Sbjct: 69  LERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTG 128

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           ++IH   ++  L + + V N+++D Y + G +  + ++FD +  ++  SWN +I     L
Sbjct: 129 RQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYL 188

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
                A+ +F  M + GV  + V++ ++L       L + GK+
Sbjct: 189 ERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKE 231



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 96/185 (51%), Gaps = 6/185 (3%)

Query: 152 LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211
           +G++ D  +F   + ACA+  ++++G+EIHGV  +    + +FV N++L FY   G +  
Sbjct: 1   MGVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKD 60

Query: 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR-EDGVGYDPVSYIAILTACS 270
             ++FD +  +D  SWN++I  + + G    AI+LF  M    G   + VS +++L  C+
Sbjct: 61  VKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCA 120

Query: 271 HGGLVE--KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
             GL +   G++    +    +         +VD+ G+ G ++D+ ++   +  E +   
Sbjct: 121 --GLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEIS-ERNGVS 177

Query: 329 WGALL 333
           W A++
Sbjct: 178 WNAII 182


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 299/418 (71%), Positives = 350/418 (83%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS     AS +F+ +  +NIVSWNAM+ANFA+NRLE +A++LVR+M    E PN+VT
Sbjct: 386 MYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVT 445

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            TNVLPACAR  FL  GKEIHARIIR G + DLF++NALTDMY+KCGCLNLAQNVFNIS 
Sbjct: 446 FTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNISV 505

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RDEVSYNILI+GYS+T+D  ESL LFSEMRLLGM+ D+VSFMG +SACANLA I+QGKEI
Sbjct: 506 RDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEI 565

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG+ +RK  HTHLFVANS+LD YTR GRIDLA K+F C+  KD ASWNT+ILGYGM GE+
Sbjct: 566 HGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGEL 625

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           DTAINLFEAM+EDGV YD VS++A+L+ACSHGGL+EKG+KYF  M   +++PT  HYACM
Sbjct: 626 DTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCDLNIEPTHTHYACM 685

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           VDLLGRAGLME+A  LI+ L + PD NIWGALLGACRI+GN+ELG WAAEHLF LKPQHC
Sbjct: 686 VDLLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACRIHGNIELGLWAAEHLFELKPQHC 745

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
           GYYILLSNMYAEA +WDEA+KVRELMKSR AKKNPGCSWVQ  D V  F+V +++ + 
Sbjct: 746 GYYILLSNMYAEAERWDEANKVRELMKSRGAKKNPGCSWVQVGDLVHAFLVGEKIDSL 803



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 175/318 (55%), Gaps = 4/318 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      +  +F  I E+N++SWNA++ +F+     + AL + R M      PNSVT
Sbjct: 285 VYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVT 344

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++++LP        + G E+H   ++  +  D+F++N+L DMYAK G   +A  +FN + 
Sbjct: 345 ISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMG 404

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+N +I  +++     E++ L  +M+  G   + V+F   + ACA L  +  GKE
Sbjct: 405 VRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKE 464

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   IR      LFV+N++ D Y++ G ++LA  +F+ + V+D  S+N LI+GY    +
Sbjct: 465 IHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYSRTND 523

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA- 298
              ++ LF  MR  G+  D VS++ +++AC++   + +GK+    +    +  T +  A 
Sbjct: 524 SLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKE-IHGLLVRKLFHTHLFVAN 582

Query: 299 CMVDLLGRAGLMEDAVKL 316
            ++DL  R G ++ A K+
Sbjct: 583 SLLDLYTRCGRIDLATKV 600



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 141/284 (49%), Gaps = 4/284 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF--PNS 58
            Y       +A  +F  + E++ VSWN ++   + +    +AL   R M        P+ 
Sbjct: 181 FYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDL 240

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           VT+ +VLP CA        + +H   ++ GL    + + NAL D+Y KCG    ++ VF+
Sbjct: 241 VTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFD 300

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            I  R+ +S+N +I  +S      ++L +F  M   GM+ + V+    +     L   K 
Sbjct: 301 EIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKL 360

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G E+HG +++  + + +F++NS++D Y +SG   +A+ IF+ + V++  SWN +I  +  
Sbjct: 361 GMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFAR 420

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
                 A+ L   M+  G   + V++  +L AC+  G +  GK+
Sbjct: 421 NRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKE 464



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 151/339 (44%), Gaps = 10/339 (2%)

Query: 2   YAKSSRPAEASYLF-HNIA-EKNIVSWNAMV-ANFAQNRLELKALQLVREMPIHNEFPNS 58
           YA    P+ +  LF H++A  ++   WN ++ AN      +         M      P+ 
Sbjct: 80  YASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRANSIAGVFD--GFGTYNTMVRAGVKPDE 137

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T   VL  C+    +R G+E+H    + G + D+F+ N L   Y  CG    A  VF+ 
Sbjct: 138 CTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDE 197

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL--GMKHDVVSFMGAISACANLAAIK 175
           +  RD+VS+N +I   S      E+L  F  M     G++ D+V+ +  +  CA      
Sbjct: 198 MPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKV 257

Query: 176 QGKEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             + +H   ++   L  H+ V N+++D Y + G    + K+FD +  ++  SWN +I  +
Sbjct: 258 MARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSF 317

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G+   A+++F  M ++G+  + V+  ++L      GL + G +        +++   
Sbjct: 318 SFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDV 377

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                ++D+  ++G    A  +   + V    + W A++
Sbjct: 378 FISNSLIDMYAKSGSSRIASTIFNKMGVRNIVS-WNAMI 415



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 12/245 (4%)

Query: 36  NRLELKALQLVREMPIHNEFPNSVTLTN---VLPACARGHFLRPGKEIHARIIRKG-LNF 91
           N+L      L +     + F  S+  +N   +L  C     L   K++HA  +  G L  
Sbjct: 9   NKLPSITTPLTKNTHFSSFFSTSLQTSNPPNLLQLCTLCDTLSQTKQVHAYSLLHGFLPR 68

Query: 92  DLFLTNALTDMYAKCG----CLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
            + L  +L   YA  G     L L Q+    S R    +N LI   S  +   +    ++
Sbjct: 69  SVSLCASLILQYASFGHPSNSLLLFQHSVAYS-RSAFLWNTLIRANS-IAGVFDGFGTYN 126

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
            M   G+K D  ++   +  C++   +++G+E+HGV  +      +FV N++L FY   G
Sbjct: 127 TMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCG 186

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM--REDGVGYDPVSYIAI 265
               A K+FD +P +D  SWNT+I    + G  + A+  F  M   + G+  D V+ +++
Sbjct: 187 LFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSV 246

Query: 266 LTACS 270
           L  C+
Sbjct: 247 LPVCA 251



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
           WNTLI    + G  D     +  M   GV  D  +Y  +L  CS    V KG++      
Sbjct: 106 WNTLIRANSIAGVFD-GFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAF 164

Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
                        ++   G  GL  DA+K+   +P E D   W  ++G C ++G  E
Sbjct: 165 KLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMP-ERDKVSWNTVIGLCSLHGFYE 220


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 298/421 (70%), Positives = 350/421 (83%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS    EAS +F+ +  KN+VSWNAM+ANFAQNR EL A+ LVR+M  + E PNSVT
Sbjct: 187 MYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVT 246

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            TNVLPACAR   +RPGKEIHAR I  G  FDLF++NALTDMYAK G L LA+NVF+ S 
Sbjct: 247 FTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDTSL 306

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RDEVSYNILIVG+SQTSDCSESLSLFSEM+L+G+K D VSFMGA+SACANL AIKQGKEI
Sbjct: 307 RDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEI 366

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  +RK  H HLFVANS+LDFYT+ GRI LA  IFD +  KD ASWNT+ILGYGMLGE+
Sbjct: 367 HGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGEL 426

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           DTAI+LFE MR+D V YD VS+IA+L+ACSHGGL+EKG+KYFDE++A  ++PT+MHYACM
Sbjct: 427 DTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELKARGIEPTQMHYACM 486

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           VDLLGRAGLME+A +LIK LP+ PDANIWGALLGACRIYGN+EL AWAAEHLF LKP+H 
Sbjct: 487 VDLLGRAGLMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFELKPEHS 546

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFTP 420
           GYY LLSNMYAE G+WDEA+++RELMKSR  KK+PGCSWVQ  ++   FVV ++++    
Sbjct: 547 GYYTLLSNMYAETGRWDEANRIRELMKSRGVKKSPGCSWVQIGEQAHAFVVGEKIEGLDL 606

Query: 421 G 421
           G
Sbjct: 607 G 607



 Score =  171 bits (432), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 203/415 (48%), Gaps = 48/415 (11%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELK-ALQLVREMPIHNEFPNSVTLTNVLPAC 68
           +A  +F  + EK++VSWN M+  F+ N    + AL + R M      PNS+T+++ LP  
Sbjct: 94  DAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFRLMIDEGLKPNSITISSFLPVL 153

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYN 127
               F + G+E+H   IR GL  D+F+ N+L DMYAK G    A NVF  +  ++ VS+N
Sbjct: 154 VELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWN 213

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            +I  ++Q      ++ L  +M+  G   + V+F   + ACA +  ++ GKEIH  +I  
Sbjct: 214 AMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHM 273

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                LFV+N++ D Y +SG + LA  +FD   ++D  S+N LI+G+    +   +++LF
Sbjct: 274 GCAFDLFVSNALTDMYAKSGHLKLARNVFDT-SLRDEVSYNILIVGHSQTSDCSESLSLF 332

Query: 248 EAMREDGVGYDPVSYIAILTACS-----------HGGLVEK------------------- 277
             M+  G+  D VS++  L+AC+           HG L+ K                   
Sbjct: 333 SEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKC 392

Query: 278 -----GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIW 329
                 +  FD M    V      +  M+   G  G ++ A+ L +N+    VE D+  +
Sbjct: 393 GRIGLARNIFDRMTNKDVAS----WNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSF 448

Query: 330 GALLGACRIYGNVELGAWAAEHLFM--LKPQHCGYYILLSNMYAEAGKWDEASKV 382
            A+L AC   G +E G    + L    ++P    +Y  + ++   AG  +EA+++
Sbjct: 449 IAVLSACSHGGLLEKGRKYFDELKARGIEPTQM-HYACMVDLLGRAGLMEEAAEL 502



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 138/281 (49%), Gaps = 12/281 (4%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           WN ++  ++   +    L++  +M      P+  T   VL ACA    +R G+E+H  ++
Sbjct: 10  WNTLIRGYSIAGVG-GGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVV 68

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS-DCSESL 143
           + G   D+F+ N L   Y  CG L  A  VF+ +  +D VS+N +I  +S       ++L
Sbjct: 69  KLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDAL 128

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203
            +F  M   G+K + ++    +     L   K G+E+HG +IR  L + +F+ANS++D Y
Sbjct: 129 DMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMY 188

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
            +SG    A+ +F  L  K+  SWN +I  +        A+ L   M++ G   + V++ 
Sbjct: 189 AKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFT 248

Query: 264 AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLL 304
            +L AC+  GLV  GK    E+ A S+     H  C  DL 
Sbjct: 249 NVLPACARMGLVRPGK----EIHARSI-----HMGCAFDLF 280


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 292/421 (69%), Positives = 352/421 (83%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS    EAS +FHN+  +NIVSWNAM+AN+A NRL L+A++ V +M    E PN+VT
Sbjct: 257 MYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVT 316

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            TNVLPACAR  FL PGKEIHA  +R GL  DLF++N+L DMYAKCGCL+ A+NVFN S 
Sbjct: 317 FTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSR 376

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +DEVSYNILI+GYS+T DC +SL+LFSEMRLLG K DVVSF+G ISACANLAA+KQGKE+
Sbjct: 377 KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEV 436

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HGV +R HL++HLFV+NS+LDFYT+ GRID+A ++F+ +  KD ASWNT+ILGYGM+GE+
Sbjct: 437 HGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGEL 496

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           +TAI++FEAMR+D V YD VSYIA+L+ACSHGGLVE+G +YF EM A  ++PTEMHY CM
Sbjct: 497 ETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCM 556

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           VDLLGRAG +E+A KLI+ LP+ PDANIWGALLGACRIYGNVELG  AAEHLF LKPQHC
Sbjct: 557 VDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHC 616

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFTP 420
           GYYILLSN+YAE G+WDEA+K+RELMKSR AKKNPGCSWVQ  D+V  FV  +R++ F  
Sbjct: 617 GYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVHAFVAEERVEGFEL 676

Query: 421 G 421
           G
Sbjct: 677 G 677



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 171/343 (49%), Gaps = 3/343 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K         +F+   EKN VSWN+++   A       AL   R M      PNSVT+
Sbjct: 157 YGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTI 216

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
           +++LP        + GKEIH   +R G   D+F+ N+L DMYAK G    A  +F N+  
Sbjct: 217 SSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDR 276

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+N +I  Y+      E++    +M+  G   + V+F   + ACA L  +  GKEI
Sbjct: 277 RNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEI 336

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H + +R  L + LFV+NS++D Y + G +  A  +F+    KD  S+N LI+GY    + 
Sbjct: 337 HAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSYNILIIGYSETDDC 395

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             ++NLF  MR  G   D VS++ +++AC++   +++GK+       + +         +
Sbjct: 396 LQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSL 455

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           +D   + G ++ A +L   +  + D   W  ++    + G +E
Sbjct: 456 LDFYTKCGRIDIACRLFNQILFK-DVASWNTMILGYGMIGELE 497



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 139/282 (49%), Gaps = 2/282 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +Y       +A  LF  + E+++VSWN ++   + N    +A      M + +   PN V
Sbjct: 54  LYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLV 113

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           ++ ++LP  A        + IH   ++ GL+  +   NAL D Y KCG +     VFN +
Sbjct: 114 SVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNET 173

Query: 120 F-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             ++EVS+N +I G +    C ++L+ F  M   G + + V+    +     L   K GK
Sbjct: 174 VEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGK 233

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           EIHG ++R    T +F+ANS++D Y +SG    A+ IF  L  ++  SWN +I  Y +  
Sbjct: 234 EIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNR 293

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
               AI     M+E G   + V++  +L AC+  G +  GK+
Sbjct: 294 LPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKE 335



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 129/267 (48%), Gaps = 10/267 (3%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   VL  C+    +  G E+H  + + G + D+++ N L  +Y  CG LN A+ +F+ +
Sbjct: 12  TFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEM 71

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQG 177
             RD VS+N +I   S   D +E+ + +  M L   +K ++VS +  +   A L   +  
Sbjct: 72  PERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMT 131

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + IH  +++  L + +   N+++D Y + G +    ++F+    K+  SWN++I G    
Sbjct: 132 RRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACK 191

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK---PTE 294
           G    A+N F  M + G   + V+  +IL         + GK    E+   S++    T+
Sbjct: 192 GRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGK----EIHGFSMRMGTETD 247

Query: 295 MHYA-CMVDLLGRAGLMEDAVKLIKNL 320
           +  A  ++D+  ++G   +A  +  NL
Sbjct: 248 IFIANSLIDMYAKSGHSTEASTIFHNL 274



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 10/191 (5%)

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G++ D  +F   +  C++   I +G E+HGV  +    T ++V N++L  Y   G ++ A
Sbjct: 5   GVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDA 64

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN-LFEAMREDGVGYDPVSYIAIL---TA 268
            ++FD +P +D  SWNT+I    + G+   A N  F  +    +  + VS I++L    A
Sbjct: 65  RRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAA 124

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
                +  +   Y  ++  DS   T      +VD  G+ G ++ A+  + N  VE +   
Sbjct: 125 LEDEEMTRRIHCYSVKVGLDSQVTT---CNALVDAYGKCGSVK-ALWQVFNETVEKNEVS 180

Query: 329 WGALLG--ACR 337
           W +++   AC+
Sbjct: 181 WNSIINGLACK 191


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 292/421 (69%), Positives = 352/421 (83%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS    EAS +FHN+  +NIVSWNAM+AN+A NRL L+A++ V +M    E PN+VT
Sbjct: 406 MYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVT 465

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            TNVLPACAR  FL PGKEIHA  +R GL  DLF++N+L DMYAKCGCL+ A+NVFN S 
Sbjct: 466 FTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSR 525

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +DEVSYNILI+GYS+T DC +SL+LFSEMRLLG K DVVSF+G ISACANLAA+KQGKE+
Sbjct: 526 KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEV 585

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HGV +R HL++HLFV+NS+LDFYT+ GRID+A ++F+ +  KD ASWNT+ILGYGM+GE+
Sbjct: 586 HGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGEL 645

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           +TAI++FEAMR+D V YD VSYIA+L+ACSHGGLVE+G +YF EM A  ++PTEMHY CM
Sbjct: 646 ETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCM 705

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           VDLLGRAG +E+A KLI+ LP+ PDANIWGALLGACRIYGNVELG  AAEHLF LKPQHC
Sbjct: 706 VDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHC 765

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFTP 420
           GYYILLSN+YAE G+WDEA+K+RELMKSR AKKNPGCSWVQ  D+V  FV  +R++ F  
Sbjct: 766 GYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVHAFVAEERVEGFEL 825

Query: 421 G 421
           G
Sbjct: 826 G 826



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 171/343 (49%), Gaps = 3/343 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K         +F+   EKN VSWN+++   A       AL   R M      PNSVT+
Sbjct: 306 YGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTI 365

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
           +++LP        + GKEIH   +R G   D+F+ N+L DMYAK G    A  +F N+  
Sbjct: 366 SSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDR 425

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+N +I  Y+      E++    +M+  G   + V+F   + ACA L  +  GKEI
Sbjct: 426 RNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEI 485

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H + +R  L + LFV+NS++D Y + G +  A  +F+    KD  S+N LI+GY    + 
Sbjct: 486 HAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSYNILIIGYSETDDC 544

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             ++NLF  MR  G   D VS++ +++AC++   +++GK+       + +         +
Sbjct: 545 LQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSL 604

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           +D   + G ++ A +L   +  + D   W  ++    + G +E
Sbjct: 605 LDFYTKCGRIDIACRLFNQILFK-DVASWNTMILGYGMIGELE 646



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 139/282 (49%), Gaps = 2/282 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +Y       +A  LF  + E+++VSWN ++   + N    +A      M + +   PN V
Sbjct: 203 LYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLV 262

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           ++ ++LP  A        + IH   ++ GL+  +   NAL D Y KCG +     VFN +
Sbjct: 263 SVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNET 322

Query: 120 F-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             ++EVS+N +I G +    C ++L+ F  M   G + + V+    +     L   K GK
Sbjct: 323 VEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGK 382

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           EIHG ++R    T +F+ANS++D Y +SG    A+ IF  L  ++  SWN +I  Y +  
Sbjct: 383 EIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNR 442

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
               AI     M+E G   + V++  +L AC+  G +  GK+
Sbjct: 443 LPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKE 484



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 133/286 (46%), Gaps = 15/286 (5%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFNISF- 120
           N+L  C++   L   K++HA  I  G L   + L  +L   YAK        ++FN +F 
Sbjct: 59  NLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQ 118

Query: 121 --RDEVSYNILIVGYSQTSDCS-ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
             R    +N LI  +S   + + +    ++ M   G++ D  +F   +  C++   I +G
Sbjct: 119 NCRTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKG 178

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            E+HGV  +    T ++V N++L  Y   G ++ A ++FD +P +D  SWNT+I    + 
Sbjct: 179 MEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVN 238

Query: 238 GEVDTAIN-LFEAMREDGVGYDPVSYIAIL---TACSHGGLVEKGKKYFDEMQADSVKPT 293
           G+   A N  F  +    +  + VS I++L    A     +  +   Y  ++  DS   T
Sbjct: 239 GDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTT 298

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG--ACR 337
                 +VD  G+ G ++ A+  + N  VE +   W +++   AC+
Sbjct: 299 ---CNALVDAYGKCGSVK-ALWQVFNETVEKNEVSWNSIINGLACK 340


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 240/415 (57%), Positives = 317/415 (76%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +AS +F  + ++N+VSWNAM+AN  QN  E +A +LV +M    E PNS+T
Sbjct: 365 MYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSIT 424

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L NVLPACAR   L+ GK+IHA  IR+GL FDLF++NAL DMY+KCG L+LA+N+F  S 
Sbjct: 425 LVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERSE 484

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D+VSYN LI+GYSQ+  C ESL LF +MR +G+ +D VSFMGA+SAC NL+  K GKEI
Sbjct: 485 KDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEI 544

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H V +R+ L  H F++NS+LD YT+ G +  A+KIF+ +  KD ASWNT+ILGYGM G++
Sbjct: 545 HCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQI 604

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           D A  LFE M+ DG+ YD VSYIA+L ACSHGGLV+KGKKYF +M A +++P +MHYACM
Sbjct: 605 DIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACM 664

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           VDLLGRAG +    ++I+++P   ++++WGALLGACRI+GN+EL  WAAEHLF LKP+H 
Sbjct: 665 VDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHS 724

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRD--EVQDFVVND 413
           GYY L+ NMYAE G+W+EA+K+R+LMKSR+ +KNP  SWVQ +D  ++Q F+V D
Sbjct: 725 GYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQDQDGNKLQAFLVGD 779



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 187/346 (54%), Gaps = 3/346 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      +  +F  + E+N VSWN+ +  F         L++ R+M  HN  P S+T
Sbjct: 264 MYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSIT 323

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L+++LPA         G+E+H   I++ ++ D+F+ N+L DMYAK G L  A  +F  + 
Sbjct: 324 LSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMK 383

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+N +I    Q    +E+  L ++M+  G   + ++ +  + ACA +A++K GK+
Sbjct: 384 DRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQ 443

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH  +IR+ L   LF++N+++D Y++ G++ LA  IF+    KD  S+NTLILGY     
Sbjct: 444 IHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFE-RSEKDDVSYNTLILGYSQSPW 502

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              ++ LF+ MR  G+ YD VS++  L+AC++  + + GK+    +    +         
Sbjct: 503 CFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNS 562

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
           ++DL  + G++  A K+   +  + D   W  ++    ++G +++ 
Sbjct: 563 LLDLYTKGGMLVTASKIFNKI-TKKDVASWNTMILGYGMHGQIDIA 607



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 128/268 (47%), Gaps = 20/268 (7%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           G E+HA  +R+G   D+F  N L   YA CG    A+ VF+ +  RD VS+N L+  +  
Sbjct: 138 GLELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLV 197

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
                ++      M   G   +V S +  + AC      K G  IH + ++  L+T + +
Sbjct: 198 NGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNL 257

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI---LGYGMLGEVDTAINLFEAMRE 252
           AN+++D Y + G ++ + ++FD +  ++  SWN+ I   L  G  G+V   + +F  M E
Sbjct: 258 ANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDV---LRMFRKMSE 314

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT---EMHYA-CMVDLLGRAG 308
             V    ++  ++L A    G  + G+    E+   S+K     ++  A  +VD+  + G
Sbjct: 315 HNVMPGSITLSSLLPALVELGSFDLGR----EVHGYSIKRAMDLDIFVANSLVDMYAKFG 370

Query: 309 LMEDAVKLIKNLPVEPDANI--WGALLG 334
            +E A  + + +    D N+  W A++ 
Sbjct: 371 SLEKASTIFEQM---KDRNVVSWNAMIA 395


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 240/415 (57%), Positives = 317/415 (76%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +AS +F  + ++N+VSWNAM+AN  QN  E +A +LV +M    E PNS+T
Sbjct: 186 MYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSIT 245

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L NVLPACAR   L+ GK+IHA  IR+GL FDLF++NAL DMY+KCG L+LA+N+F  S 
Sbjct: 246 LVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERSE 305

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D+VSYN LI+GYSQ+  C ESL LF +MR +G+ +D VSFMGA+SAC NL+  K GKEI
Sbjct: 306 KDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEI 365

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H V +R+ L  H F++NS+LD YT+ G +  A+KIF+ +  KD ASWNT+ILGYGM G++
Sbjct: 366 HCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQI 425

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           D A  LFE M+ DG+ YD VSYIA+L ACSHGGLV+KGKKYF +M A +++P +MHYACM
Sbjct: 426 DIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACM 485

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           VDLLGRAG +    ++I+++P   ++++WGALLGACRI+GN+EL  WAAEHLF LKP+H 
Sbjct: 486 VDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHS 545

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRD--EVQDFVVND 413
           GYY L+ NMYAE G+W+EA+K+R+LMKSR+ +KNP  SWVQ +D  ++Q F+V D
Sbjct: 546 GYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQDQDGNKLQAFLVGD 600



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 187/345 (54%), Gaps = 3/345 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      +  +F  + E+N VSWN+ +  F         L++ R+M  HN  P S+T
Sbjct: 85  MYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSIT 144

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L+++LPA         G+E+H   I++ ++ D+F+ N+L DMYAK G L  A  +F  + 
Sbjct: 145 LSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMK 204

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+N +I    Q    +E+  L ++M+  G   + ++ +  + ACA +A++K GK+
Sbjct: 205 DRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQ 264

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH  +IR+ L   LF++N+++D Y++ G++ LA  IF+    KD  S+NTLILGY     
Sbjct: 265 IHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFE-RSEKDDVSYNTLILGYSQSPW 323

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              ++ LF+ MR  G+ YD VS++  L+AC++  + + GK+    +    +         
Sbjct: 324 CFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNS 383

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344
           ++DL  + G++  A K+   +  + D   W  ++    ++G +++
Sbjct: 384 LLDLYTKGGMLVTASKIFNKI-TKKDVASWNTMILGYGMHGQIDI 427



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 140/265 (52%), Gaps = 3/265 (1%)

Query: 18  IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVTLTNVLPACARGHFLRP 76
           + E+++VSWN++V+ F  N +   A + +  M + + FP N  +L +V+PAC      + 
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSM-MRSGFPLNVASLVSVVPACGTEQEEKF 59

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           G  IHA  ++ GLN  + L NAL DMY K G +  +  VF+ +  ++EVS+N  I  +  
Sbjct: 60  GLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLN 119

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
                + L +F +M    +    ++    + A   L +   G+E+HG +I++ +   +FV
Sbjct: 120 AGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFV 179

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
           ANS++D Y + G ++ A+ IF+ +  ++  SWN +I      G    A  L   M++ G 
Sbjct: 180 ANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGE 239

Query: 256 GYDPVSYIAILTACSHGGLVEKGKK 280
             + ++ + +L AC+    ++ GK+
Sbjct: 240 CPNSITLVNVLPACARMASLKMGKQ 264



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 104/222 (46%), Gaps = 19/222 (8%)

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VS+N L+  +       ++      M   G   +V S +  + AC      K G  I
Sbjct: 4   RDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSI 63

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI---LGYGML 237
           H + ++  L+T + +AN+++D Y + G ++ + ++FD +  ++  SWN+ I   L  G  
Sbjct: 64  HALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFY 123

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT---E 294
           G+V   + +F  M E  V    ++  ++L A    G  + G+    E+   S+K     +
Sbjct: 124 GDV---LRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGR----EVHGYSIKRAMDLD 176

Query: 295 MHYA-CMVDLLGRAGLMEDAVKLIKNLPVEPDANI--WGALL 333
           +  A  +VD+  + G +E A  + + +    D N+  W A++
Sbjct: 177 IFVANSLVDMYAKFGSLEKASTIFEQM---KDRNVVSWNAMI 215


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 239/413 (57%), Positives = 322/413 (77%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +AS +F NI  +N+VSWNAM+AN AQN  E +A  LV EM  + E PNS T
Sbjct: 358 MYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFT 417

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L N+LPAC+R   ++ GK+IHA  I + L  DLF++NAL D+YAKCG L++AQ++F+ S 
Sbjct: 418 LVNLLPACSRVASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDRSE 477

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D+VSYN LIVGYSQ+  C ESL LF +MR  G+++D VSFMG +SACANL+A KQGKEI
Sbjct: 478 KDDVSYNTLIVGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEI 537

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HGV +R+ L+TH F+ANS+LD YT+ G +  A+KIF+ +  KD ASWNT+ILGYGM G++
Sbjct: 538 HGVLVRRLLNTHPFLANSLLDLYTKGGMLATASKIFNRITRKDVASWNTMILGYGMHGQI 597

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           D A  LF+ M++DGV YD VSYIA+L+ACSHGGLV++GKKYF +M A ++KP +MHYACM
Sbjct: 598 DVAFELFDLMKDDGVDYDHVSYIAVLSACSHGGLVDRGKKYFSQMIAQNIKPQQMHYACM 657

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           VDLLGRAG + ++V++I N+P   ++++WGALLG+CRI+G++EL   AAEHLF LKP+H 
Sbjct: 658 VDLLGRAGQLSESVEIITNMPFPANSDVWGALLGSCRIHGDIELARLAAEHLFELKPEHS 717

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           GYY LL NMY+E+G W+EA++++ LMKSR+ +KNP  SWVQ+ +++Q F+V D
Sbjct: 718 GYYTLLRNMYSESGMWNEANEIKTLMKSRKVQKNPAYSWVQSGNKLQAFLVGD 770



 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 206/397 (51%), Gaps = 10/397 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      +  +F+ + EKN VSWN+ +  FA        L++ R M  H   P SVT
Sbjct: 257 MYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVT 316

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L+++LPA     +   GKE+H   IR+ +  D+F+ N+L DMYAK GCL  A  +F NI 
Sbjct: 317 LSSLLPALVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIE 376

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+N +I   +Q    +E+ SL  EM+  G   +  + +  + AC+ +A++K GK+
Sbjct: 377 GRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQ 436

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH  +I + L + LFV+N+++D Y + G++ +A  IFD    KD  S+NTLI+GY     
Sbjct: 437 IHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFD-RSEKDDVSYNTLIVGYSQSQC 495

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              +++LF+ MR  G+ YD VS++  L+AC++    ++GK+    +    +         
Sbjct: 496 CFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHPFLANS 555

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           ++DL  + G++  A K+  N     D   W  ++    ++G +++   A E   ++K   
Sbjct: 556 LLDLYTKGGMLATASKIF-NRITRKDVASWNTMILGYGMHGQIDV---AFELFDLMKDDG 611

Query: 360 CGY----YILLSNMYAEAGKWDEASKVRELMKSREAK 392
             Y    YI + +  +  G  D   K    M ++  K
Sbjct: 612 VDYDHVSYIAVLSACSHGGLVDRGKKYFSQMIAQNIK 648



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 147/299 (49%), Gaps = 10/299 (3%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  +  ++IVSWN++V+    N +   A + V  M       N  +L +V+PAC     
Sbjct: 169 VFDEMPARDIVSWNSLVSALLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERD 228

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
              G  +H  +++ GL+  + L NAL DMY K G L  +  VFN +  ++EVS+N  +  
Sbjct: 229 EGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGC 288

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           ++      + L +F  M    +    V+    + A  +L     GKE+HG +IR+ + + 
Sbjct: 289 FAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMESD 348

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +F+ANS++D Y + G ++ A+ IF+ +  ++  SWN +I      G    A +L   M++
Sbjct: 349 IFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQK 408

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
           +G   +  + + +L ACS    V+ GK+         +    +H + M DL     L++
Sbjct: 409 NGECPNSFTLVNLLPACSRVASVKMGKQ---------IHAWSIHRSLMSDLFVSNALID 458



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 136/313 (43%), Gaps = 9/313 (2%)

Query: 16  HNIAEKNIVSWNAMVANFAQNRLELKALQLVREM------PIHNEFPNSVTLTNVLPACA 69
           H +  ++   WN++    A   L  +AL++   M      P    FP ++          
Sbjct: 64  HPLRLRSAFLWNSLSRALASAGLPSEALRVYNCMVRSGVRPDDRTFPFALHAAAAAVVAE 123

Query: 70  RGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
             H  + G E+HA  +R+GL   D+F  N L   YA  G    A+ VF+ +  RD VS+N
Sbjct: 124 AEHPAK-GAELHAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWN 182

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            L+          ++      M   G+  +V S +  + AC        G  +HG+ ++ 
Sbjct: 183 SLVSALLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKS 242

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            L + + + N+++D Y + G ++ + ++F+ +  K+  SWN+ +  +   G  +  + +F
Sbjct: 243 GLDSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMF 302

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
             M E  V    V+  ++L A    G    GK+        +++        ++D+  + 
Sbjct: 303 RVMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKF 362

Query: 308 GLMEDAVKLIKNL 320
           G +E A  + +N+
Sbjct: 363 GCLEKASAIFENI 375


>gi|147773389|emb|CAN64573.1| hypothetical protein VITISV_010383 [Vitis vinifera]
          Length = 672

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 261/423 (61%), Positives = 306/423 (72%), Gaps = 47/423 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS    EAS +F+ +  KN+VSWNAM+ANFAQNR EL A+ LVR+M  + E PNSVT
Sbjct: 288 MYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVT 347

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            TNVLPACAR   +RPGKEIHAR I  G  FDLF++NALTDMYAK G L LA+NVF+ S 
Sbjct: 348 FTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDTSL 407

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RDEVSYNILIVG SQTSDCSESLSLFSEM+L+G+K D VSFMGA+SACANL AIKQGKEI
Sbjct: 408 RDEVSYNILIVGXSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEI 467

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  +RK  H HLFVANS+LDFYT+ GRI LA  IFD +  KD ASWNT+ILGYGMLGE+
Sbjct: 468 HGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGEL 527

Query: 241 DTAINLF-EAMREDGV-GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
           DTAI+L  E MR+D V   D VS+IA+L+ACSH                           
Sbjct: 528 DTAIDLLTENMRKDDVESDDSVSFIAVLSACSH--------------------------- 560

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
                 GRAGLME+A +LIK LP+ PDANIWGALLGACRIYGN+EL AWAAEHLF LKP+
Sbjct: 561 ------GRAGLMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFELKPE 614

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
           H            + G+WDEA+++RELMKSR  KK+PGCSWVQ  ++   FVV ++++  
Sbjct: 615 H------------KTGRWDEANRIRELMKSRGVKKSPGCSWVQIGEQAHAFVVGEKIEGL 662

Query: 419 TPG 421
             G
Sbjct: 663 DLG 665



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 153/305 (50%), Gaps = 11/305 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVT 60
           Y       +A  +F  + EK++VSWN M+  F+ N    + L L  EM + +   PN V+
Sbjct: 86  YGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGCWXEVLDLFGEMRLRSGLRPNVVS 145

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VLP CA         EIH  +++ GL F + + NAL D+Y KCG +   + VF  + 
Sbjct: 146 VVSVLPVCAGVEDEVTASEIHGYVVKVGLEFQVIVGNALLDVYGKCGNVAALKQVFGEMV 205

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N +I  +       ++L +F  M   G+K + ++    +     L   K G+E
Sbjct: 206 EKNLVSWNAIITSFGYKGHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGRE 265

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG +IR  L + +F+ANS++D Y +SG    A+ +F  L  K+  SWN +I  +     
Sbjct: 266 VHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRF 325

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ L   M++ G   + V++  +L AC+  GLV  GK    E+ A S+     H  C
Sbjct: 326 ELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGK----EIHARSI-----HMGC 376

Query: 300 MVDLL 304
             DL 
Sbjct: 377 AFDLF 381



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 3/243 (1%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           WN ++  ++   +    L++  +M      P+  T   VL ACA    +R G+E+H  ++
Sbjct: 10  WNTLIRGYSIAGVG-GGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGXVV 68

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLS 144
           + G   D+F+ N L   Y  CG L  A  VF+ +  +D VS+N +I  +S      E L 
Sbjct: 69  KLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGCWXEVLD 128

Query: 145 LFSEMRLL-GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203
           LF EMRL  G++ +VVS +  +  CA +       EIHG  ++  L   + V N++LD Y
Sbjct: 129 LFGEMRLRSGLRPNVVSVVSVLPVCAGVEDEVTASEIHGYVVKVGLEFQVIVGNALLDVY 188

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
            + G +    ++F  +  K+  SWN +I  +G  G    A+++F  M ++G+  + ++  
Sbjct: 189 GKCGNVAALKQVFGEMVEKNLVSWNAIITSFGYKGHYRDALDMFRLMIDEGLKPNSITIS 248

Query: 264 AIL 266
           + L
Sbjct: 249 SFL 251


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 237/413 (57%), Positives = 321/413 (77%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +AS +F NI  +N+VSWNAM+AN  QN  E +A +LV EM  + E PNS T
Sbjct: 365 MYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFT 424

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L N+LPAC+R   ++ GK+IHA  IR+ L  DLF++NAL D+YAKCG LNLA+ +F+ S 
Sbjct: 425 LVNLLPACSRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDRSE 484

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D VSYN LIVGYSQ+  C ESL LF +MRL G++HD VSFMG +SAC+NL+A KQGKEI
Sbjct: 485 KDGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEI 544

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HGV +++ L +H F+ANS+LD YT+ G +D A+KIF+ +  KD ASWNT+ILGYGM G++
Sbjct: 545 HGVLVKRLLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQKDVASWNTMILGYGMHGQI 604

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           D A  LF+ M++DG+ YD VSYIA+L+ CSHGGLV++GKKYF +M A ++KP +MHYACM
Sbjct: 605 DVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQNIKPQQMHYACM 664

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           VDLLGRAG + ++ ++I+N+P   ++++WGALLG+CRI+G++EL   AAEHLF LKP++ 
Sbjct: 665 VDLLGRAGQLSESAEIIRNMPFRANSDVWGALLGSCRIHGDIELARLAAEHLFELKPENS 724

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           GYY LL NMY+E+G W+EA+ V++LMKSR+ +KNP  SWVQ+ +++Q F+V D
Sbjct: 725 GYYTLLRNMYSESGMWNEANGVKKLMKSRKVQKNPAYSWVQSGNKLQAFLVGD 777



 Score =  197 bits (502), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 210/397 (52%), Gaps = 10/397 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      + ++F+ + EKN VSWN+ +  FA        L++ R M  H+  P SVT
Sbjct: 264 MYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVT 323

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L+++LPA     +   GKE+H   IR+ +  D+F+ N L DMYAK GC   A  +F NI 
Sbjct: 324 LSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIE 383

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+N +I   +Q    +E+  L  EM+  G   +  + +  + AC+ +A++K GK+
Sbjct: 384 VRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQ 443

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH  +IR+ L + LFV+N+++D Y + G+++LA  IFD    KD  S+NTLI+GY     
Sbjct: 444 IHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFD-RSEKDGVSYNTLIVGYSQSQC 502

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              +++LF+ MR  G+ +D VS++  L+ACS+    ++GK+    +    +         
Sbjct: 503 CFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFLANS 562

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           ++D+  + G+++ A K+  N   + D   W  ++    ++G +++   A E   ++K   
Sbjct: 563 LLDVYTKGGMLDTASKIF-NRITQKDVASWNTMILGYGMHGQIDV---AFELFDLMKDDG 618

Query: 360 CGY----YILLSNMYAEAGKWDEASKVRELMKSREAK 392
             Y    YI + ++ +  G  D   K    M ++  K
Sbjct: 619 IEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQNIK 655



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 146/284 (51%), Gaps = 9/284 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA   R A+A  +F  +  +++VSWN++V+    N +   A + V  M       N  +L
Sbjct: 164 YAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVGMMRSGVPVNVASL 223

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++LPAC        G  +H  +++ GLN  + L NAL DMY K G L  + +VFN +  
Sbjct: 224 VSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLESSMHVFNGMQE 283

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV----VSFMGAISACANLAAIKQ 176
           ++EVS+N  I  ++      + L +F  M     +HDV    V+    + A  +L     
Sbjct: 284 KNEVSWNSAIGCFAHAGFHEDVLEMFRLMS----EHDVTPGSVTLSSLLPALVDLGYFHL 339

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GKE+HG +IR+ + + +F+AN+++D Y + G  + A+ IF+ + V++  SWN +I     
Sbjct: 340 GKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQ 399

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            G    A  L   M+++G   +  + + +L ACS    V+ GK+
Sbjct: 400 NGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQ 443



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 138/313 (44%), Gaps = 6/313 (1%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL---TNVLPACARGHFLRPGKEIHA 82
           WN++    A   L  +AL++   M      P+  T     +   A A+      G E+HA
Sbjct: 83  WNSLSRALASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPAKGAELHA 142

Query: 83  RIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCS 140
             +R+GL   D+F  N L   YA CG    A+ VF+ +  RD VS+N L+          
Sbjct: 143 AALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLE 202

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
           ++      M   G+  +V S +  + AC        G  +HG+ ++  L++ + + N+++
Sbjct: 203 DAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALV 262

Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
           D Y + G ++ +  +F+ +  K+  SWN+ I  +   G  +  + +F  M E  V    V
Sbjct: 263 DMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSV 322

Query: 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           +  ++L A    G    GK+        +V+        ++D+  + G  E A  + +N+
Sbjct: 323 TLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENI 382

Query: 321 PVEPDANIWGALL 333
            V  +   W A++
Sbjct: 383 EVR-NVVSWNAMI 394


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 230/413 (55%), Positives = 317/413 (76%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  I  +N+VSWNAM+AN  QN  E +A  LV +M    E PNS+T
Sbjct: 322 MYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSIT 381

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L N+LPAC+R   L+ GK+IHA  IR GL FDLF++NAL DMYAKCG L LAQ++F++S 
Sbjct: 382 LVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFDLSE 441

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D+VSYN LI+GYSQ+    ESL+LF ++  +G+++D +SFMGA++AC NL++ KQGKEI
Sbjct: 442 KDDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEI 501

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HGV +R+ L  H F+AN++L  YT+ G +D A+KIF+ +  KD ASWN +I+GYGM G++
Sbjct: 502 HGVLVRRLLSNHPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQI 561

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           D A +LF+ M++ GV YD VSYIA+L+ CSHGGLVE+GKKYF  M A +++P +MHYACM
Sbjct: 562 DAAFHLFDLMKDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQNLEPQQMHYACM 621

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           VDLLGR+G + ++V++I ++P   ++++WGALLGACRI+GN+EL  +AA+HLF LKP+H 
Sbjct: 622 VDLLGRSGQLTESVEIILDMPFHANSDVWGALLGACRIHGNIELAQYAADHLFELKPEHS 681

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           GYY +L NMYAEAG+W+EA K+R LMKSR+ +KNP  SWVQ+ +++Q F+V D
Sbjct: 682 GYYSVLRNMYAEAGRWNEAHKIRTLMKSRKVQKNPAYSWVQSGNKLQAFLVGD 734



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 188/360 (52%), Gaps = 7/360 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      +  +F  + E+N VSWN+ +  F    L    L L R M      P S+T
Sbjct: 221 MYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSIT 280

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L+++LPA     +   G+E+H   I++ +  D+F+ N+L DMYAK G L  A  VF  I 
Sbjct: 281 LSSLLPALVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIE 340

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+N +I    Q    SE+  L  +M+  G   + ++ +  + AC+ +A++K GK+
Sbjct: 341 VRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQ 400

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH  +IR  L   LF++N+++D Y + G++ LA  IFD L  KD  S+NTLILGY     
Sbjct: 401 IHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFD-LSEKDDVSYNTLILGYSQSPW 459

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              ++NLF+ +   G+ YD +S++  LTAC++    ++GK+    +    +         
Sbjct: 460 SFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSNHPFLANT 519

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           ++ L  + G+++ A K+   +  E D   W  ++    ++G ++    AA HLF L   H
Sbjct: 520 LLGLYTKGGMLDTASKIFNRIK-EKDVASWNNMIMGYGMHGQID----AAFHLFDLMKDH 574



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 141/280 (50%), Gaps = 1/280 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA      +A  +F  +  +++VSWN++V++F  N++   A Q +  M       N  +L
Sbjct: 121 YAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMMRSGVPVNVASL 180

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            +V+PAC        G  +H  +++ GL+  + L NAL DMY K G +  +  VF  +  
Sbjct: 181 VSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEGMPE 240

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+EVS+N  I  +       + L+LF  M   G     ++    + A   L     G+E+
Sbjct: 241 RNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPALVELGYFDLGREV 300

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG +I++ +   +FVANS++D Y + G ++ A  +F+ + V++  SWN +I      G  
Sbjct: 301 HGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAE 360

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
             A  L   M++DG   + ++ + +L ACS    ++ GK+
Sbjct: 361 SEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQ 400



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 130/268 (48%), Gaps = 22/268 (8%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           G E+HA  +R G   D+F  N L   YA CG    A+ VF+ +  RD VS+N L+  +  
Sbjct: 95  GLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLA 154

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
                ++      M   G+  +V S +  + AC        G  +HG+ ++  L + + +
Sbjct: 155 NKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNL 214

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI---LGYGMLGEVDTAINLFEAMRE 252
            N+++D Y + G ++ + K+F+ +P ++  SWN+ I   L  G+ G+V   + LF  M E
Sbjct: 215 GNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDV---LALFRGMSE 271

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFD---EMQADSVKPT---EMHYA-CMVDLLG 305
            G     ++  ++L A     LVE G  YFD   E+   S+K     ++  A  +VD+  
Sbjct: 272 RGFMPGSITLSSLLPA-----LVELG--YFDLGREVHGYSIKRAMELDIFVANSLVDMYA 324

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALL 333
           + G +E A  + + + V  +   W A++
Sbjct: 325 KFGSLEKACAVFEKIEVR-NVVSWNAMI 351



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 10/173 (5%)

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           +G E+H   +R      +F  N+++ FY   G    A ++FD +P +D  SWN+L+  + 
Sbjct: 94  KGLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFL 153

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC---SHGGLVEKGKKYFDEMQADSVKP 292
                D A     +M   GV  +  S ++++ AC     GG          +   DS+  
Sbjct: 154 ANKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVN 213

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA---CRIYGNV 342
                  +VD+ G+ G +E ++K+ + +P E +   W + +G      +YG+V
Sbjct: 214 LG---NALVDMYGKFGHVEASMKVFEGMP-ERNEVSWNSAIGCFLNAGLYGDV 262


>gi|255565109|ref|XP_002523547.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537254|gb|EEF38886.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 555

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/281 (71%), Positives = 234/281 (83%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS    +AS +FH + EKN+VSWNAMVANFAQNR EL A++LVR+M      PN VT
Sbjct: 257 MYAKSGHSTQASVVFHLMTEKNVVSWNAMVANFAQNRFELAAIELVRQMQTDGAIPNPVT 316

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            TN LPACAR  FLRPGKEIHAR  R G  FD F++NALTDMYAKCG LNLA+NVFNIS 
Sbjct: 317 FTNALPACARMGFLRPGKEIHARAFRMGCYFDQFVSNALTDMYAKCGFLNLARNVFNISL 376

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RDEVSYNILIVGYSQT++ SESLSLF EM L+GM+ DVVS+MG I+ACA+L A+KQG+EI
Sbjct: 377 RDEVSYNILIVGYSQTTNSSESLSLFLEMGLVGMERDVVSYMGVIAACASLVALKQGEEI 436

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H + +RK+LH H+F+ANS+LDFYT+ G+IDLA KIF  +  KD+ASWNT+ILG GMLGE+
Sbjct: 437 HALVVRKNLHMHIFIANSLLDFYTKCGKIDLACKIFYRISEKDAASWNTIILGVGMLGEL 496

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
           + AINLFEAMREDGV YD VSYIA+L+ACSHGGLVEKGKKY
Sbjct: 497 EAAINLFEAMREDGVEYDSVSYIAVLSACSHGGLVEKGKKY 537



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 185/358 (51%), Gaps = 15/358 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      +  +F  + E+N VSWNA++ + A       AL+  R M      PNSVT
Sbjct: 156 VYGKCGNLKSSRRVFDEMMERNEVSWNAIITSLAYMEHNKDALEAFRLMINEEVKPNSVT 215

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
           + ++LP          GKEIH   +R G+  D+F++N+L DMYAK G    A  VF++ +
Sbjct: 216 IASILPVLVELEHFDLGKEIHGFSLRFGIESDVFISNSLIDMYAKSGHSTQASVVFHLMT 275

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N ++  ++Q      ++ L  +M+  G   + V+F  A+ ACA +  ++ GKE
Sbjct: 276 EKNVVSWNAMVANFAQNRFELAAIELVRQMQTDGAIPNPVTFTNALPACARMGFLRPGKE 335

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH    R   +   FV+N++ D Y + G ++LA  +F+ + ++D  S+N LI+GY     
Sbjct: 336 IHARAFRMGCYFDQFVSNALTDMYAKCGFLNLARNVFN-ISLRDEVSYNILIVGYSQTTN 394

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV-KPTEMHY- 297
              +++LF  M   G+  D VSY+ ++ AC+    +++G    +E+ A  V K   MH  
Sbjct: 395 SSESLSLFLEMGLVGMERDVVSYMGVIAACASLVALKQG----EEIHALVVRKNLHMHIF 450

Query: 298 --ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
               ++D   + G ++ A K+   +  E DA  W  ++    + G +E    AA +LF
Sbjct: 451 IANSLLDFYTKCGKIDLACKIFYRIS-EKDAASWNTIILGVGMLGELE----AAINLF 503



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/310 (30%), Positives = 162/310 (52%), Gaps = 14/310 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVT 60
           Y  +   ++A  +F  + E+++VSWN ++  F+ N   LKAL L  EM + + F PN VT
Sbjct: 55  YGNTGYLSDAKKVFDEMLERDVVSWNTLLGAFSVNGFYLKALDLFYEMNLRSGFRPNMVT 114

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VLP CA         EIH  +++ GL+  + L NAL D+Y KCG L  ++ VF+ + 
Sbjct: 115 VVSVLPVCAALEDEVVASEIHCYVVKIGLDSQVTLCNALVDVYGKCGNLKSSRRVFDEMM 174

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+EVS+N +I   +      ++L  F  M    +K + V+    +     L     GKE
Sbjct: 175 ERNEVSWNAIITSLAYMEHNKDALEAFRLMINEEVKPNSVTIASILPVLVELEHFDLGKE 234

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG ++R  + + +F++NS++D Y +SG    A+ +F  +  K+  SWN ++  +     
Sbjct: 235 IHGFSLRFGIESDVFISNSLIDMYAKSGHSTQASVVFHLMTEKNVVSWNAMVANFAQNRF 294

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK----------YFDEMQADS 289
              AI L   M+ DG   +PV++   L AC+  G +  GK+          YFD+  +++
Sbjct: 295 ELAAIELVRQMQTDGAIPNPVTFTNALPACARMGFLRPGKEIHARAFRMGCYFDQFVSNA 354

Query: 290 VKPTEMHYAC 299
           +  T+M+  C
Sbjct: 355 L--TDMYAKC 362



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 131/281 (46%), Gaps = 3/281 (1%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P+  T   VL ACA    ++ G EIH  + + G +FD+F+ N L   Y   G L+ A+ V
Sbjct: 8   PDDHTFPFVLKACADNLNVQKGMEIHGCVFKLGFDFDVFVGNTLLLFYGNTGYLSDAKKV 67

Query: 116 FNISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAA 173
           F+    RD VS+N L+  +S      ++L LF EM L  G + ++V+ +  +  CA L  
Sbjct: 68  FDEMLERDVVSWNTLLGAFSVNGFYLKALDLFYEMNLRSGFRPNMVTVVSVLPVCAALED 127

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
                EIH   ++  L + + + N+++D Y + G +  + ++FD +  ++  SWN +I  
Sbjct: 128 EVVASEIHCYVVKIGLDSQVTLCNALVDVYGKCGNLKSSRRVFDEMMERNEVSWNAIITS 187

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
              +     A+  F  M  + V  + V+  +IL         + GK+         ++  
Sbjct: 188 LAYMEHNKDALEAFRLMINEEVKPNSVTIASILPVLVELEHFDLGKEIHGFSLRFGIESD 247

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
                 ++D+  ++G    A  ++ +L  E +   W A++ 
Sbjct: 248 VFISNSLIDMYAKSGHSTQA-SVVFHLMTEKNVVSWNAMVA 287



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G++ D  +F   + ACA+   +++G EIHG   +      +FV N++L FY  +G +  A
Sbjct: 5   GIRPDDHTFPFVLKACADNLNVQKGMEIHGCVFKLGFDFDVFVGNTLLLFYGNTGYLSDA 64

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP--VSYIAILTACS 270
            K+FD +  +D  SWNTL+  + + G    A++LF  M     G+ P  V+ +++L  C+
Sbjct: 65  KKVFDEMLERDVVSWNTLLGAFSVNGFYLKALDLFYEMNLRS-GFRPNMVTVVSVLPVCA 123


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/416 (44%), Positives = 272/416 (65%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  LF  +  +++ SWNA++  ++ N    +AL     M +    PNS+T
Sbjct: 265 MYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSIT 324

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VLPACA    L  G++IH   IR G   +  + NAL +MYAKCG +N A  +F  + 
Sbjct: 325 MVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMP 384

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ V++N +I GYSQ     E+L+LF EM+  G+K D  + +  + ACA+  A++QGK+
Sbjct: 385 KKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQ 444

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG TIR    +++ V   ++D Y + G ++ A K+F+ +P +D  SW T+IL YG+ G 
Sbjct: 445 IHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGH 504

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A+ LF  M+E G   D +++ AILTACSH GLV++G +YF  M++D  + P   HYA
Sbjct: 505 GEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYA 564

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGRAG +++A  +IKN+ +EPDAN+WGALLGACRI+ N+ELG  AA+HLF L P 
Sbjct: 565 CLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPD 624

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + GYY+LLSN+YAEA +W++ +K+R++MK +  KK PGCS V    +VQ F+V DR
Sbjct: 625 NAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDR 680



 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 126/391 (32%), Positives = 214/391 (54%), Gaps = 5/391 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  + ++++VSWNA++A ++QN    +AL L  EM ++   PNS T
Sbjct: 164 MYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSST 223

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+P CA    L  GK+IH   IR G+  D+ + N L +MYAKCG +N A  +F  + 
Sbjct: 224 LVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMP 283

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD  S+N +I GYS  S   E+L+ F+ M++ G+K + ++ +  + ACA+L A++QG++
Sbjct: 284 IRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQ 343

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  IR    ++  V N++++ Y + G ++ A K+F+ +P K+  +WN +I GY   G 
Sbjct: 344 IHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGH 403

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ LF  M+  G+  D  + +++L AC+H   +E+GK+          +   +    
Sbjct: 404 PHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTG 463

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE--LGAWAAEHLFMLKP 357
           +VD+  + G +  A KL + +P E D   W  ++ A  I+G+ E  L  ++       K 
Sbjct: 464 LVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKL 522

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
            H  +  +L+   + AG  D+  +  + MKS
Sbjct: 523 DHIAFTAILTAC-SHAGLVDQGLQYFQCMKS 552



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 178/321 (55%), Gaps = 2/321 (0%)

Query: 22  NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81
           N V W   +  + +N    KAL+L  +M      P+ +   +V+ AC     L+ G+++H
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 82  ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCS 140
             II +G   D+ +  AL  MY KCG L  A+ VF+ +  RD VS+N +I GYSQ     
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
           E+L+LFSEM++ G+K +  + +  +  CA+L A++QGK+IH   IR  + + + V N ++
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLV 263

Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
           + Y + G ++ A+K+F+ +P++D ASWN +I GY +  +   A+  F  M+  G+  + +
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSI 323

Query: 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           + +++L AC+H   +E+G++          +  ++    +V++  + G +  A KL + +
Sbjct: 324 TMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERM 383

Query: 321 PVEPDANIWGALLGACRIYGN 341
           P + +   W A++     +G+
Sbjct: 384 P-KKNVVAWNAIISGYSQHGH 403



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 145/319 (45%), Gaps = 37/319 (11%)

Query: 107 GCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS 166
            C N  Q        + V +   I+GY +    +++L L+ +M+  G+  D + F+  I 
Sbjct: 69  ACANQTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIK 128

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
           AC + + ++ G+++H   I +   + + V  ++   YT+ G ++ A ++FD +P +D  S
Sbjct: 129 ACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVS 188

Query: 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
           WN +I GY   G+   A+ LF  M+ +G+  +  + ++++  C+H   +E+GK+      
Sbjct: 189 WNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAI 248

Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG----------AC 336
              ++   +    +V++  + G +  A KL + +P+  D   W A++G          A 
Sbjct: 249 RSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIR-DVASWNAIIGGYSLNSQHHEAL 307

Query: 337 RIYGNVELGAW------------AAEHLFMLK--PQHCGYYI------------LLSNMY 370
             +  +++               A  HLF L+   Q  GY I             L NMY
Sbjct: 308 AFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMY 367

Query: 371 AEAGKWDEASKVRELMKSR 389
           A+ G  + A K+ E M  +
Sbjct: 368 AKCGNVNSAYKLFERMPKK 386


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 182/415 (43%), Positives = 266/415 (64%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+KS     A  +F  + E+++VSW +M+A +A+  L   +++L  EM      P+  T
Sbjct: 295 MYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFT 354

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T +L ACA    L  GK++H  I    +  DLF++NAL DMYAKCG +  A +VF+ + 
Sbjct: 355 ITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQ 414

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+N +I GYS+ S  +E+L+LF EM+    K + ++    + ACA+LAA+++G+E
Sbjct: 415 VKDIVSWNTMIGGYSKNSLPNEALNLFVEMQY-NSKPNSITMACILPACASLAALERGQE 473

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R        VAN+++D Y + G + LA  +FD +P KD  SW  +I GYGM G 
Sbjct: 474 IHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGY 533

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYA 298
              AI  F  MR  G+  D VS+I+IL ACSH GL+++G  +F+ M+ +  ++P   HYA
Sbjct: 534 GSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYA 593

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLL RAG +  A K IK +P+EPDA IWGALL  CRIY +V+L    AEH+F L+P+
Sbjct: 594 CIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPE 653

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + GYY+LL+N+YAEA KW+E  K+RE +  R  +KNPGCSW++ + +V  FV  D
Sbjct: 654 NTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGD 708



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 165/335 (49%), Gaps = 3/335 (0%)

Query: 7   RPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLP 66
           R   A  LF  + +++++SWN+M++ +  N L  K L L  +M +     +  T+ +V+ 
Sbjct: 200 RVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVA 259

Query: 67  ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVS 125
            C+    L  G+ +H   I+     +L L N L DMY+K G LN A  VF  +  R  VS
Sbjct: 260 GCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVS 319

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           +  +I GY++      S+ LF EM   G+  D+ +    + ACA    ++ GK++H    
Sbjct: 320 WTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIK 379

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
              + + LFV+N+++D Y + G +  A+ +F  + VKD  SWNT+I GY      + A+N
Sbjct: 380 ENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALN 439

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           LF  M+ +    + ++   IL AC+    +E+G++    +  +           +VD+  
Sbjct: 440 LFVEMQYNSKP-NSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYL 498

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           + G +  A  L   +P E D   W  ++    ++G
Sbjct: 499 KCGALGLARLLFDMIP-EKDLVSWTVMIAGYGMHG 532



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 166/393 (42%), Gaps = 65/393 (16%)

Query: 5   SSRPAEASYLFHNIA------------EKNIVSWNAMVANFAQNRLELKALQLVREMPIH 52
           S  P  +S L+H+ A            +  I  +N  +  F +     +A++L+ + P  
Sbjct: 38  SKTPLVSSNLYHSCATIGTSVLPSETIDCKITDYNIEICRFCELGNLRRAMELINQSPKP 97

Query: 53  NEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
           +      T  +VL  CA    ++ G+ IH+ I    +  D  L + L  MY  CG L   
Sbjct: 98  D--LELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREG 155

Query: 113 QNVFN--------------------------------------------------ISFRD 122
           + +F+                                                  +  RD
Sbjct: 156 RRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRD 215

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            +S+N +I GY       + L LF +M LLG+  D+ + +  ++ C+N   +  G+ +HG
Sbjct: 216 VISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHG 275

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             I+      L + N +LD Y++SG ++ A ++F+ +  +   SW ++I GY   G  D 
Sbjct: 276 YAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDM 335

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
           ++ LF  M ++G+  D  +   IL AC+  GL+E GK   + ++ + ++        ++D
Sbjct: 336 SVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMD 395

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +  + G M DA  +   + V+ D   W  ++G 
Sbjct: 396 MYAKCGSMGDAHSVFSEMQVK-DIVSWNTMIGG 427



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 116/271 (42%), Gaps = 33/271 (12%)

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           YNI I  + +  +   ++ L ++     +  ++ ++   +  CA+L +I+ G+ IH +  
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDL--ELRTYCSVLQLCADLKSIQDGRRIHSIIQ 128

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
              +     + + ++  Y   G +    +IFD +  +    WN L+ GY  +G    +++
Sbjct: 129 SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLS 188

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           LF+ MRE G+                   VE  +K FDE+    V    + +  M+    
Sbjct: 189 LFKRMRELGIRR-----------------VESARKLFDELGDRDV----ISWNSMISGYV 227

Query: 306 RAGLMEDAVKLIKN---LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362
             GL E  + L +    L +  D     +++  C   G + LG   A H + +K    G 
Sbjct: 228 SNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLG--RALHGYAIKASF-GK 284

Query: 363 YILLSN----MYAEAGKWDEASKVRELMKSR 389
            + L+N    MY+++G  + A +V E M  R
Sbjct: 285 ELTLNNCLLDMYSKSGNLNSAIQVFETMGER 315


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 178/415 (42%), Positives = 267/415 (64%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F  ++ + +V+W +++A +A+  L  +A++L  EM      P+  T
Sbjct: 42  MYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFT 101

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +T VL ACA    L  GK++H  I    +  ++F+ NAL DMYAKCG +  A +VF  + 
Sbjct: 102 ITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMP 161

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+N +I GYS+ S  +E+LSLF +M +L MK D  +    + ACA+LA++ +GKE
Sbjct: 162 VKDIISWNTMIGGYSKNSLPNEALSLFGDM-VLEMKPDGTTLACILPACASLASLDRGKE 220

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  +R    +   VAN+++D Y + G   LA  +FD +P KD  +W  +I GYGM G 
Sbjct: 221 VHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGF 280

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + AI  F  MR+ G+  D VS+I+IL ACSH GL+++G ++F+ MQ + +VKP   HYA
Sbjct: 281 GNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYA 340

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLL R+G +  A K IK++P+EPDA IWGALL  CRI+ +V+L    AEH+F L+P+
Sbjct: 341 CIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPE 400

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + GYY+LL+N YAEA KW+E  K+R+ +  R  KKNPGCSW++ + +V  F+  +
Sbjct: 401 NTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGN 455



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 144/281 (51%), Gaps = 3/281 (1%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
           + ++L ACA    +  G+ +H   ++  +++     N L DMYAKCG L+ A  VF++ S
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  V++  LI  Y++     E++ LF EM   G+  D+ +    + ACA   +++ GK+
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H       + +++FV N+++D Y + G ++ AN +F  +PVKD  SWNT+I GY     
Sbjct: 121 VHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSL 180

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A++LF  M  + +  D  +   IL AC+    +++GK+    +  +     +     
Sbjct: 181 PNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANA 239

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           +VD+  + G+   A  L   +P + D   W  ++    ++G
Sbjct: 240 LVDMYVKCGVPVLARLLFDMIPTK-DLITWTVMIAGYGMHG 279


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 176/415 (42%), Positives = 260/415 (62%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  + EK +VSW +M+  + +  L   A++L  EM      P+   
Sbjct: 397 MYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYA 456

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T++L ACA    L+ GK +H  I    L  + F++NALTDMYAKCG +  A +VF+ + 
Sbjct: 457 VTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMK 516

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+N +I GY++ S  +E+L+LF+EM+    K D  +    + ACA+LAA+ +G+E
Sbjct: 517 KKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGRE 575

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R       +V N+++D Y + G + LA  +FD +P KD  SW  +I GYGM G 
Sbjct: 576 IHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGY 635

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AIN F  MR  G+  D VS+I+IL ACSH GL+++G K F+ M+ +  ++P   HYA
Sbjct: 636 GSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYA 695

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLL R G +  A K IK +P++PDA IWGALL  CRI+ +V+L    AE +F L+P+
Sbjct: 696 CMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPE 755

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + GYY+LL+N+YAEA KW+E  K+R+ +  R  KKNPGCSW++ + ++  FV  D
Sbjct: 756 NTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGD 810



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 169/337 (50%), Gaps = 3/337 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     E   +F  ++E  I  WN M++ ++ +    +++ L ++M      PNS T
Sbjct: 194 MYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYT 253

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +++L   A    +  G+++H  I + G N    + N+L   Y     +  AQ +F+ ++
Sbjct: 254 FSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELT 313

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+N +I GY +       + +F +M + G+  D+ + +    ACAN+  +  GK 
Sbjct: 314 DRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKV 373

Query: 180 IHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +H  +I+   L   +   N++LD Y++ G ++ A ++F+ +  K   SW ++I GY   G
Sbjct: 374 LHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREG 433

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             D AI LF+ M+  GV  D  +  +IL AC+  G ++ GK   D ++ ++++       
Sbjct: 434 LSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSN 493

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            + D+  + G M+DA  +  ++  + D   W  ++G 
Sbjct: 494 ALTDMYAKCGSMKDAHDVFSHMK-KKDVISWNTMIGG 529



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 171/369 (46%), Gaps = 45/369 (12%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           ++L  CA    +R G+ + + I   G+  D  L   L  MY KCG L   + VF+ +S  
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSES 214

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
               +N++I  YS + +  ES++LF +M  LG+K +  +F   +   A +A +++G+++H
Sbjct: 215 KIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVH 274

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
           G+  +   +++  V NS++ FY    ++  A K+FD L  +D  SWN++I GY   G  D
Sbjct: 275 GLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDD 334

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK---------------------- 279
             I +F  M   GV  D  + + +  AC++ G +  GK                      
Sbjct: 335 RGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTL 394

Query: 280 --------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IKNLPV 322
                         + F+ M   +V    + +  M+    R GL + A+KL   +K+  V
Sbjct: 395 LDMYSKCGDLNSAIRVFERMDEKTV----VSWTSMITGYVREGLSDGAIKLFDEMKSRGV 450

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI-LLSNMYAEAGKWDEASK 381
            PD     ++L AC I GN++ G    +++     +   +    L++MYA+ G   +A  
Sbjct: 451 VPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHD 510

Query: 382 VRELMKSRE 390
           V   MK ++
Sbjct: 511 VFSHMKKKD 519


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 171/423 (40%), Positives = 265/423 (62%), Gaps = 2/423 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++S        +F  +  +NIVSW A++A + QNR   + L + REM      PN+VT
Sbjct: 172 MYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVT 231

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +VLPACA   FL  GK IH   I+ G++ D+ LTNAL  +Y KCG +  A+++F+ + 
Sbjct: 232 LVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMV 291

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N +I  Y Q +  + ++ LF  M+   +  D ++ +  ISACA+L A+  G+ 
Sbjct: 292 VQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRW 351

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H +  RK L  ++ + N+++D Y + G IDLA ++F+ LP +   SW ++I      G 
Sbjct: 352 MHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGH 411

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A+ LF  M+++GV  +  ++ A+ TAC H GLVE+G+K+F+ M  D S+ P   H A
Sbjct: 412 GEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCA 471

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAG + +A + I  +PVEPD ++WGALLG+CRI+ N+EL    AE LF+L PQ
Sbjct: 472 CMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQ 531

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
              +Y+L+SN+YAEAG+W++A+++R+LM+ RE KK PG S V+       F+   R ++ 
Sbjct: 532 TVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLVEVNRRFHTFLSGSRSQSS 591

Query: 419 TPG 421
             G
Sbjct: 592 LRG 594



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 173/334 (51%), Gaps = 2/334 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F  + ++++  WN ++  +A      +AL L   M     FP++ T   V+ +CA 
Sbjct: 81  ARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAV 140

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              LR GKE+H  I++ G + D+F+ ++L  MY++ G     + VF  +  R+ VS+  +
Sbjct: 141 LSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAV 200

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY Q     E L +F EM   G + + V+ +  + ACA L  +  GK IHG  I+  +
Sbjct: 201 IAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGV 260

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
              + + N+++  Y + G ++ A  +FD + V++  SWN +I  Y        A+ LF  
Sbjct: 261 DPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRR 320

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M+ + V +D ++ +++++AC+  G +  G+   + ++   ++        ++D+  + G 
Sbjct: 321 MQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGN 380

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           ++ A ++ + LP     + W +++GAC  +G+ E
Sbjct: 381 IDLAREVFERLPCRSVVS-WTSMIGACASHGHGE 413



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 126/260 (48%), Gaps = 5/260 (1%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKC--GCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
            IHA ++  G   +L L+  L  + A C    ++ A+ +F+ +  RD   +N LI GY+ 
Sbjct: 47  RIHALVVTNGCGQNLLLSTKLI-ITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYAD 105

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
              C E+L+L+S M   G+  D  +F   + +CA L+A+++GKE+H   ++    + +FV
Sbjct: 106 AGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFV 165

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            +S++  Y++SG       +F  + V++  SW  +I GY         + +F  M   G 
Sbjct: 166 QSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGT 225

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
             + V+ +++L AC+    +  GK          V P       ++ L G+ G +E A  
Sbjct: 226 QPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARS 285

Query: 316 LIKNLPVEPDANIWGALLGA 335
           L   + V+   + W A++ A
Sbjct: 286 LFDGMVVQNLVS-WNAMIAA 304


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 174/416 (41%), Positives = 251/416 (60%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A  +F      +IV   AM++ +  N +   AL++ R +       NSVT
Sbjct: 294 IYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVT 353

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L +VLPACA    L  GKE+H  I++ G     ++ +A+ DMYAKCG L+LA   F  IS
Sbjct: 354 LASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS 413

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V +N +I   SQ     E++ LF +M + G K+D VS   A+SACANL A+  GKE
Sbjct: 414 DKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKE 473

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +R    + LF  ++++D Y++ G +DLA ++FD +  K+  SWN++I  YG  G 
Sbjct: 474 IHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGR 533

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
           +  ++NLF  M  DG+  D V+++AI++AC H G V++G  YF  M  +  +     HYA
Sbjct: 534 LKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYA 593

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDL GRAG + +A  +I ++P  PDA +WG LLGACR++GNVEL   A+ +LF L PQ
Sbjct: 594 CMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQ 653

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + GYY+LLSN++A AG+W+   K+R LMK R  +K PGCSW+   +    FV  DR
Sbjct: 654 NSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAADR 709



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 194/425 (45%), Gaps = 55/425 (12%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+++    +A YLF  +  K+ V WN M+  + +N     A  +  EM      PNSVT 
Sbjct: 192 YSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTF 251

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTN--ALTDMYAKCGCLNLAQNVFNI- 118
             VL  CA    +  G ++H  ++  GL  D  + N  AL D+Y KC  + +A+ +F+  
Sbjct: 252 ACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQR 311

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           +  D V    +I GY      + +L +F  +    M+ + V+    + ACA LAA+  GK
Sbjct: 312 TPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGK 371

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+HG  ++       +V ++I+D Y + GR+DLA++ F  +  KD+  WN++I      G
Sbjct: 372 ELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNG 431

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK------------------- 279
           + + AI+LF  M   G  YD VS  A L+AC++   +  GK                   
Sbjct: 432 KPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAES 491

Query: 280 ----------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--- 320
                           + FD M+    +  E+ +  ++   G  G ++D++ L   +   
Sbjct: 492 ALIDMYSKCGNLDLACRVFDTME----EKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGD 547

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG------YYILLSNMYAEAG 374
            ++PD   + A++ AC   G V+ G     H F    +  G      +Y  + +++  AG
Sbjct: 548 GIQPDHVTFLAIISACGHAGQVDEGI----HYFRCMTEELGIMARMEHYACMVDLFGRAG 603

Query: 375 KWDEA 379
           + +EA
Sbjct: 604 RLNEA 608



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 121/264 (45%), Gaps = 13/264 (4%)

Query: 48  EMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG 107
           +  IHN+   +  L ++L  C     L  G++ HA+++  G+ ++  L   L  MY  CG
Sbjct: 36  QFSIHNDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCG 95

Query: 108 CLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS 166
               A+N+F  +       +N +I G++       +L  + +M   G   D  +F   I 
Sbjct: 96  AFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIK 155

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
           AC  L ++  G+ +H           +FV +S++ FY+ +G I  A  +FD +P KD   
Sbjct: 156 ACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVL 215

Query: 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLV 275
           WN ++ GY   G+ D A  +F  MR      + V++  +L+ C+           HG +V
Sbjct: 216 WNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVV 275

Query: 276 EKGKKYFDEMQADSVKPTEMHYAC 299
             G +  D   A++    ++++ C
Sbjct: 276 SSGLE-MDSPVANTFALIDIYFKC 298


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  344 bits (883), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 174/416 (41%), Positives = 251/416 (60%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A  +F      +IV   AM++ +  N +   AL++ R +       NSVT
Sbjct: 393 IYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVT 452

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L +VLPACA    L  GKE+H  I++ G     ++ +A+ DMYAKCG L+LA   F  IS
Sbjct: 453 LASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS 512

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V +N +I   SQ     E++ LF +M + G K+D VS   A+SACANL A+  GKE
Sbjct: 513 DKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKE 572

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +R    + LF  ++++D Y++ G +DLA ++FD +  K+  SWN++I  YG  G 
Sbjct: 573 IHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGR 632

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
           +  ++NLF  M  DG+  D V+++AI++AC H G V++G  YF  M  +  +     HYA
Sbjct: 633 LKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYA 692

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDL GRAG + +A  +I ++P  PDA +WG LLGACR++GNVEL   A+ +LF L PQ
Sbjct: 693 CMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQ 752

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + GYY+LLSN++A AG+W+   K+R LMK R  +K PGCSW+   +    FV  DR
Sbjct: 753 NSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAADR 808



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 169/343 (49%), Gaps = 2/343 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+++    +A YLF  +  K+ V WN M+  + +N     A  +  EM      PNSVT 
Sbjct: 192 YSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTF 251

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR 121
             VL  CA    +  G ++H  ++  GL  D  + N L  MYAKCG L  A+ +F++  +
Sbjct: 252 ACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPK 311

Query: 122 -DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
            D V++N +I GY Q     E+  LF EM    MK D ++F   +   +  A ++QGKEI
Sbjct: 312 TDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEI 371

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   IR  +   +F+ ++++D Y +   +++A KIFD     D      +I GY + G  
Sbjct: 372 HCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMN 431

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           + A+ +F  + ++ +  + V+  ++L AC+    +  GK+    +  +    +    + +
Sbjct: 432 NNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAI 491

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           +D+  + G ++ A +    +  + DA  W +++ +C   G  E
Sbjct: 492 MDMYAKCGRLDLAHQTFIGIS-DKDAVCWNSMITSCSQNGKPE 533



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 153/325 (47%), Gaps = 2/325 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY       +A  +F+ +       WN M+  F        AL    +M      P+  T
Sbjct: 90  MYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYT 149

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V+ AC   + +  G+ +H +I   G   D+F+ ++L   Y++ GC++ A+ +F+ + 
Sbjct: 150 FPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMP 209

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V +N+++ GY +  D   +  +F EMR      + V+F   +S CA+   I  G +
Sbjct: 210 SKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQ 269

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+ +   L     VAN++L  Y + G +  A ++FD +P  D  +WN +I GY   G 
Sbjct: 270 LHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGF 329

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +D A  LF  M    +  D +++ + L   S G  + +GK+    +  + V       + 
Sbjct: 330 MDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSA 389

Query: 300 MVDLLGRAGLMEDAVKLI-KNLPVE 323
           ++D+  +   +E A K+  +  PV+
Sbjct: 390 LIDIYFKCRDVEMARKIFDQRTPVD 414



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 131/287 (45%), Gaps = 2/287 (0%)

Query: 48  EMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG 107
           +  IHN+   +  L ++L  C     L  G++ HA+++  G+ ++  L   L  MY  CG
Sbjct: 36  QFSIHNDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCG 95

Query: 108 CLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS 166
               A+N+F  +       +N +I G++       +L  + +M   G   D  +F   I 
Sbjct: 96  AFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIK 155

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
           AC  L ++  G+ +H           +FV +S++ FY+ +G I  A  +FD +P KD   
Sbjct: 156 ACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVL 215

Query: 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
           WN ++ GY   G+ D A  +F  MR      + V++  +L+ C+   ++  G +    + 
Sbjct: 216 WNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVV 275

Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +  ++        ++ +  + G + DA +L   +P + D   W  ++
Sbjct: 276 SSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMP-KTDLVTWNGMI 321



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 86/231 (37%), Gaps = 37/231 (16%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           +  C + + + QG++ H   +   +  +  +   +L  Y   G    A  IF  L +  S
Sbjct: 53  LQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCS 112

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
             WN +I G+ M+G+ D A+  +  M   G   D  ++  ++ AC     V  G+   D+
Sbjct: 113 EPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDK 172

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344
           +Q    +      + ++      G + DA  L   +P + D  +W  +L           
Sbjct: 173 IQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSK-DGVLWNVML----------- 220

Query: 345 GAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395
                                  N Y + G WD A+ V   M+ R  + NP
Sbjct: 221 -----------------------NGYVKNGDWDNATGV--FMEMRRTETNP 246


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 167/417 (40%), Positives = 260/417 (62%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A   F+ ++ ++IV+WN+++  +AQ      A+ +  ++ +    P++ T
Sbjct: 474 MYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGT 533

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS- 119
           +  V+PACA  + L  G  IH  I++ G   D  + NAL DMYAKCG L  A+ +FN + 
Sbjct: 534 MVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTD 593

Query: 120 -FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +DEV++N++I  Y Q     E++S F +MRL     + V+F+  + A A LAA ++G 
Sbjct: 594 FTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGM 653

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             H   I+    ++  V NS++D Y + G++D + K+F+ +  KD+ SWN ++ GY + G
Sbjct: 654 AFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHG 713

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
             D AI LF  M+E  V  D VS++++L+AC H GLVE+G+K F  M     +KP   HY
Sbjct: 714 HGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHY 773

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACMVDLLGRAGL ++ +  IK +PVEPDA +WGALLG+CR++ NV+LG  A +HL  L+P
Sbjct: 774 ACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEP 833

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           ++  ++++LS++YA++G+W +A K R  M     KK PGCSWV+ +++V  F V D+
Sbjct: 834 RNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDK 890



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 168/348 (48%), Gaps = 25/348 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K      A  +F  + +++ VSW  M+A +A N   ++ L+L  +M + N   N V+
Sbjct: 272 LYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVS 331

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +   A A    L  GKEIH   +++ ++ D+ +   L  MYAKCG    A+ +F  + 
Sbjct: 332 AVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQ 391

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V+++ +I    QT    E+LSLF EM+   MK + V+ M  + ACA+L+ +K GK 
Sbjct: 392 GRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKS 451

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH  T++  + + L    +++  Y + G    A   F+ +  +D  +WN+LI GY  +G+
Sbjct: 452 IHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGD 511

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQAD 288
              AI++F  +R   +  D  + + ++ AC+           HG +V+ G +        
Sbjct: 512 PYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFE-------- 563

Query: 289 SVKPTEMHYA-CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
               ++ H    ++D+  + G +  A  L        D   W  ++ A
Sbjct: 564 ----SDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 157/280 (56%), Gaps = 3/280 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  + ++++V+WNAM+A  +Q+    +A+   R M +    P+SV+
Sbjct: 173 MYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVS 232

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L N+ P   +   +   + IH  + R+  +F   ++N L D+Y+KCG +++A+ VF+ + 
Sbjct: 233 LLNLFPGICKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMV 290

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D+VS+  ++ GY+      E L LF +M+L  ++ + VS + A  A A    +++GKE
Sbjct: 291 DQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKE 350

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +++ + + + VA  ++  Y + G  + A ++F  L  +D  +W+ +I      G 
Sbjct: 351 IHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGY 410

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
            + A++LF+ M+   +  + V+ ++IL AC+   L++ GK
Sbjct: 411 PEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGK 450



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 195/418 (46%), Gaps = 42/418 (10%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F +    + + WN+M+  + +++   +AL++   M      P+  T T VL AC  
Sbjct: 82  ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTG 141

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              L+ G   H  I R+GL  D+F+   L DMY+K G L  A+ VF+ +  RD V++N +
Sbjct: 142 ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAM 201

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I G SQ+ D  E++  F  M+L+G++   VS +        L+ I+  + IHG   R+  
Sbjct: 202 IAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF 261

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            +   V+N ++D Y++ G +D+A ++FD +  +D  SW T++ GY   G     + LF+ 
Sbjct: 262 SSA--VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDK 319

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD---EMQADS----VKPTEMHYA---- 298
           M+   V  + VS ++   A +    +EKGK+      + + DS      P  + YA    
Sbjct: 320 MKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGE 379

Query: 299 --------------------CMVDLLGRAGLMEDAVKL---IKNLPVEPDANIWGALLGA 335
                                ++  L + G  E+A+ L   ++N  ++P+     ++L A
Sbjct: 380 TEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPA 439

Query: 336 CRIYGNVELGAWAAEHLFMLKP---QHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390
           C     ++LG   + H F +K            L +MYA+ G +  A      M SR+
Sbjct: 440 CADLSLLKLG--KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRD 495



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 114/223 (51%), Gaps = 13/223 (5%)

Query: 53  NEFPN--SVTLTN------VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104
           +EFP+  S T TN      +L +C     L P  +IHA+II  G      +T+ L ++Y+
Sbjct: 19  SEFPSLSSSTYTNYLHYPRLLSSCKH---LNPLLQIHAQIIVSGFKHHHSITH-LINLYS 74

Query: 105 KCGCLNLAQNVFNISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMG 163
                +LA++VF+ +     + +N +I  Y+++   +E+L ++  M   G++ D  +F  
Sbjct: 75  LFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTF 134

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
            + AC     +++G   HG   R+ L   +F+   ++D Y++ G +  A ++FD +P +D
Sbjct: 135 VLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRD 194

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
             +WN +I G     +   A++ F +M+  GV    VS + + 
Sbjct: 195 VVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLF 237



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 80/171 (46%), Gaps = 5/171 (2%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           +S+C +L  + Q   IH   I      H  + + +++ Y+   + DLA  +FD  P    
Sbjct: 39  LSSCKHLNPLLQ---IHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSR 94

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
             WN++I  Y    + + A+ ++  M E G+  D  ++  +L AC+    +++G  +  E
Sbjct: 95  ILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGE 154

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +    ++      A +VD+  + G ++ A ++   +P + D   W A++  
Sbjct: 155 IDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAG 204


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  337 bits (865), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 171/418 (40%), Positives = 265/418 (63%), Gaps = 7/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  ++++++VS+ +M+A +A+  L  +A++L  EM      P+  T
Sbjct: 189 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 248

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T VL  CAR   L  GK +H  I    L FD+F++NAL DMYAKCG +  A+ VF+ + 
Sbjct: 249 VTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMR 308

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH---DVVSFMGAISACANLAAIKQ 176
            +D +S+N +I GYS+    +E+LSLF+   LL  K    D  +    + ACA+L+A  +
Sbjct: 309 VKDIISWNTIIGGYSKNCYANEALSLFN--LLLEEKRFSPDERTVACVLPACASLSAFDK 366

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+EIHG  +R    +   VANS++D Y + G + LA+ +FD +  KD  SW  +I GYGM
Sbjct: 367 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 426

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G    AI LF  MR+ G+  D +S++++L ACSH GLV++G ++F+ M+ +  ++PT  
Sbjct: 427 HGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 486

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYAC+VD+L R G +  A + I+N+P+ PDA IWGALL  CRI+ +V+L    AE +F L
Sbjct: 487 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 546

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +P++ GYY+L++N+YAEA KW++  ++R+ +  R  +KNPGCSW++ +  V  FV  D
Sbjct: 547 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGD 604



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 193/428 (45%), Gaps = 46/428 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            Y K+ R   A  +F  + E++++SWN+++  +  N L  K L +  +M +     +  T
Sbjct: 88  FYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLAT 147

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + +V   CA    +  G+ +H+  ++   + +    N L DMY+KCG L+ A+ VF  +S
Sbjct: 148 IVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS 207

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VSY  +I GY++     E++ LF EM   G+  DV +    ++ CA    + +GK 
Sbjct: 208 DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR 267

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H       L   +FV+N+++D Y + G +  A  +F  + VKD  SWNT+I GY     
Sbjct: 268 VHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCY 327

Query: 240 VDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKK---------YFDE----- 284
            + A++LF  + E+     D  +   +L AC+     +KG++         YF +     
Sbjct: 328 ANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN 387

Query: 285 ----------------MQADSVKPTEM-HYACMVDLLGRAGLMEDAVKL---IKNLPVEP 324
                           M  D +   ++  +  M+   G  G  ++A+ L   ++   +E 
Sbjct: 388 SLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA 447

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG------YYILLSNMYAEAGKWDE 378
           D   + +LL AC   G V+ G W     F +    C       +Y  + +M A  G   +
Sbjct: 448 DEISFVSLLYACSHSGLVDEG-W---RFFNIMRHECKIEPTVEHYACIVDMLARTGDLIK 503

Query: 379 ASKVRELM 386
           A +  E M
Sbjct: 504 AYRFIENM 511



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 158/322 (49%), Gaps = 2/322 (0%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL 74
           F  +  +  + WN ++   A++     ++ L ++M       +S T + V  + +    +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGY 133
             G+++H  I++ G      + N+L   Y K   ++ A+ VF+ ++ RD +S+N +I GY
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
                  + LS+F +M + G++ D+ + +   + CA+   I  G+ +H + ++       
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
              N++LD Y++ G +D A  +F  +  +   S+ ++I GY   G    A+ LFE M E+
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
           G+  D  +  A+L  C+   L+++GK+  + ++ + +         ++D+  + G M++A
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 300

Query: 314 VKLIKNLPVEPDANIWGALLGA 335
             +   + V+ D   W  ++G 
Sbjct: 301 ELVFSEMRVK-DIISWNTIIGG 321


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  337 bits (865), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 171/409 (41%), Positives = 260/409 (63%), Gaps = 3/409 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +A  LF  I  ++ VSWNAM+A +AQ+    +AL   +EM   N  PN  T+  VL ACA
Sbjct: 216 DARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACA 275

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
           +   L  G  + + I   GL  +L L NAL DMY+KCG L+ A+++F  I  +D +S+N+
Sbjct: 276 QSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNV 335

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +I GYS  +   E+L+LF +M+   ++ + V+F+  + ACA L A+  GK IH    +K 
Sbjct: 336 MIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKF 395

Query: 189 LH-THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
           L  T+  +  S++D Y + G I+ A ++F  +  K   SWN +I G  M G  + A+ LF
Sbjct: 396 LGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELF 455

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGR 306
             MR++G   D ++++ +L+ACSH GLVE G++ F  M  D  + P   HY CM+DLLGR
Sbjct: 456 RQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGR 515

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366
           AGL ++A  L+KN+ ++PD  IWG+LLGACR++GNVELG +AA+HLF L+P++ G Y+LL
Sbjct: 516 AGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLL 575

Query: 367 SNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           SN+YA AG+WD+ +++R  +  +  KK PGCS ++    V +F+V D++
Sbjct: 576 SNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKV 624



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 123/461 (26%), Positives = 206/461 (44%), Gaps = 79/461 (17%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF +I + N   WN M+   + +   + A+     M +    PNS T   +L +CA+
Sbjct: 85  ALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAK 144

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN------------- 117
               + GK+IH  +++ GL  D F+  +L +MYA+ G L  A+ VF+             
Sbjct: 145 VGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTAL 204

Query: 118 -------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
                              I  RD VS+N +I GY+Q+    E+L+ F EM+   +  + 
Sbjct: 205 ITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
            + +  +SACA   +++ G  +        L ++L + N+++D Y++ G +D A  +F+ 
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEG 324

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +  KD  SWN +I GY  +     A+ LF  M++  V  + V++++IL AC++ G ++ G
Sbjct: 325 ICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG 384

Query: 279 K---KYFD----------------EMQAD------------SVKPTEM-HYACMVDLLGR 306
           K    Y D                +M A              +KP  +  +  M+  L  
Sbjct: 385 KWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAM 444

Query: 307 AGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELG-----AWAAEHLFMLKPQ 358
            G    A++L + +     EPD   +  +L AC   G VELG     +   ++    K Q
Sbjct: 445 HGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQ 504

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSW 399
           H G  I   ++   AG +DEA     LMK+ E K + G  W
Sbjct: 505 HYGCMI---DLLGRAGLFDEA---EALMKNMEMKPD-GAIW 538



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 139/271 (51%), Gaps = 8/271 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  LF  I EK+I+SWN M+  ++      +AL L R+M   N  PN VT
Sbjct: 308 MYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVT 367

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVF-NI 118
             ++LPACA    L  GK IHA I +K L   +  L  +L DMYAKCG +  A+ VF  +
Sbjct: 368 FVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGM 427

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +   S+N +I G +     + +L LF +MR  G + D ++F+G +SAC++   ++ G+
Sbjct: 428 KPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGR 487

Query: 179 EIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGM 236
           +     +  + +   L     ++D   R+G  D A  +   + +K D A W +L+    +
Sbjct: 488 QCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRV 547

Query: 237 LGEVD----TAINLFEAMREDGVGYDPVSYI 263
            G V+     A +LFE   E+   Y  +S I
Sbjct: 548 HGNVELGEFAAKHLFELEPENPGAYVLLSNI 578



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 176/410 (42%), Gaps = 74/410 (18%)

Query: 50  PIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA--KCG 107
           P +    N  +LT +L  C     L   K+IH++II+ GL+   F  + L +  A    G
Sbjct: 25  PPYKLLQNHPSLT-LLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCAISPFG 80

Query: 108 CLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS 166
            L+ A  +F +I   ++  +N +I G S +S    ++  +  M L G++ +  +F   + 
Sbjct: 81  NLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLK 140

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR------------------ 208
           +CA + A ++GK+IHG  ++  L +  FV  S+++ Y ++G                   
Sbjct: 141 SCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVS 200

Query: 209 -------------IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
                        +D A ++F+ +PV+D+ SWN +I GY   G  + A+  F+ M+   V
Sbjct: 201 FTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANV 260

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
             +  + + +L+AC+  G +E G      ++   +         ++D+  + G ++ A  
Sbjct: 261 APNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARD 320

Query: 316 LIKNL----------------------------------PVEPDANIWGALLGACRIYGN 341
           L + +                                   VEP+   + ++L AC   G 
Sbjct: 321 LFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGA 380

Query: 342 VELGAWAAEHL--FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
           ++LG W   ++    L   +   +  L +MYA+ G  + A +V   MK +
Sbjct: 381 LDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPK 430


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  337 bits (864), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 170/419 (40%), Positives = 262/419 (62%), Gaps = 9/419 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  ++ +++VS+ +M+A +A+  L  +A++L  EM      P+  T
Sbjct: 340 MYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T VL  CAR   L  GK +H  I    + FD+F++NAL DMYAKCG +  A+ VF+ + 
Sbjct: 400 VTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMR 459

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFS----EMRLLGMKHDVVSFMGAISACANLAAIK 175
            +D +S+N +I GYS+    +E+LSLF+    E R      D  +    + ACA+L+A  
Sbjct: 460 VKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRF---SPDERTVACVLPACASLSAFD 516

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           +G+EIHG  +R    +   VANS++D Y + G + LA  +FD +  KD  SW  +I GYG
Sbjct: 517 KGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYG 576

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
           M G    AI LF  MR+ G+  D +S++++L ACSH GLV++G ++F+ M+ +  ++PT 
Sbjct: 577 MHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTV 636

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYAC+VD+L R G +  A + I+N+P+ PDA IWGALL  CRI+ +V+L    AE +F 
Sbjct: 637 EHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFE 696

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           L+P++ GYY+L++N+YAEA KW+E  ++R+ +  R  +KNPGCSW++ +  V  FV  D
Sbjct: 697 LEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGD 755



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 164/374 (43%), Gaps = 50/374 (13%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL +VL  CA    L+ GKE+   I   G   D  L + L  MY  CG L  A  VF+ +
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQV 155

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
                + +NIL+   +++ D S S+ LF +M   G++ D  +F     + ++L ++  G+
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGE 215

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++HG  ++        V NS++ FY ++ R+D A K+FD +  +D  SWN++I GY   G
Sbjct: 216 QLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNG 275

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG-------------------- 278
             +  +++F  M   G+  D  + +++   C+   L+  G                    
Sbjct: 276 LAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCN 335

Query: 279 ---------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
                          K  F EM   SV    + Y  M+    R GL  +AVKL + +  E
Sbjct: 336 TLLDMYSKCGDLDSAKVVFREMSGRSV----VSYTSMIAGYAREGLAGEAVKLFEEMEEE 391

Query: 324 ---PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN----MYAEAGKW 376
              PD     A+L  C     ++ G    E    +K    G+ I +SN    MYA+ G  
Sbjct: 392 GISPDVYTVTAVLNCCARNRLLDEGKRVHE---WIKENDMGFDIFVSNALMDMYAKCGSM 448

Query: 377 DEASKVRELMKSRE 390
            EA  V   M+ ++
Sbjct: 449 REAELVFSEMRVKD 462



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 161/336 (47%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY       EAS +F  +  +  + WN ++   A++     ++ L ++M       +S T
Sbjct: 138 MYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYT 197

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            + V  + +    +  G+++H  I++ G      + N+L   Y K   ++ A+ VF+ ++
Sbjct: 198 FSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMT 257

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+N +I GY       + LS+F +M   G++ D+ + +   + CA+   I  G+ 
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRA 317

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++          N++LD Y++ G +D A  +F  +  +   S+ ++I GY   G 
Sbjct: 318 VHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGL 377

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ LFE M E+G+  D  +  A+L  C+   L+++GK+  + ++ + +         
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNA 437

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++D+  + G M +A  +   + V+ D   W  ++G 
Sbjct: 438 LMDMYAKCGSMREAELVFSEMRVK-DIISWNTVIGG 472


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  337 bits (864), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 171/418 (40%), Positives = 265/418 (63%), Gaps = 7/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  ++++++VS+ +M+A +A+  L  +A++L  EM      P+  T
Sbjct: 340 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T VL  CAR   L  GK +H  I    L FD+F++NAL DMYAKCG +  A+ VF+ + 
Sbjct: 400 VTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMR 459

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH---DVVSFMGAISACANLAAIKQ 176
            +D +S+N +I GYS+    +E+LSLF+   LL  K    D  +    + ACA+L+A  +
Sbjct: 460 VKDIISWNTIIGGYSKNCYANEALSLFN--LLLEEKRFSPDERTVACVLPACASLSAFDK 517

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+EIHG  +R    +   VANS++D Y + G + LA+ +FD +  KD  SW  +I GYGM
Sbjct: 518 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 577

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G    AI LF  MR+ G+  D +S++++L ACSH GLV++G ++F+ M+ +  ++PT  
Sbjct: 578 HGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 637

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYAC+VD+L R G +  A + I+N+P+ PDA IWGALL  CRI+ +V+L    AE +F L
Sbjct: 638 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 697

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +P++ GYY+L++N+YAEA KW++  ++R+ +  R  +KNPGCSW++ +  V  FV  D
Sbjct: 698 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGD 755



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 166/374 (44%), Gaps = 50/374 (13%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL +VL  CA    L+ GKE+   I   G   D  L + L+ MY  CG L  A  VF+ +
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
                + +NIL+   +++ D S S+ LF +M   G++ D  +F     + ++L ++  G+
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGE 215

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++HG  ++        V NS++ FY ++ R+D A K+FD +  +D  SWN++I GY   G
Sbjct: 216 QLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNG 275

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG-------------------- 278
             +  +++F  M   G+  D  + +++   C+   L+  G                    
Sbjct: 276 LAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCN 335

Query: 279 ---------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
                          K  F EM   SV    + Y  M+    R GL  +AVKL + +  E
Sbjct: 336 TLLDMYSKCGDLDSAKAVFREMSDRSV----VSYTSMIAGYAREGLAGEAVKLFEEMEEE 391

Query: 324 ---PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN----MYAEAGKW 376
              PD     A+L  C  Y  ++ G    E    +K    G+ I +SN    MYA+ G  
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHE---WIKENDLGFDIFVSNALMDMYAKCGSM 448

Query: 377 DEASKVRELMKSRE 390
            EA  V   M+ ++
Sbjct: 449 QEAELVFSEMRVKD 462



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 164/336 (48%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY       EAS +F  +  +  + WN ++   A++     ++ L ++M       +S T
Sbjct: 138 MYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYT 197

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            + V  + +    +  G+++H  I++ G      + N+L   Y K   ++ A+ VF+ ++
Sbjct: 198 FSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMT 257

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+N +I GY       + LS+F +M + G++ D+ + +   + CA+   I  G+ 
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA 317

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + ++          N++LD Y++ G +D A  +F  +  +   S+ ++I GY   G 
Sbjct: 318 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGL 377

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ LFE M E+G+  D  +  A+L  C+   L+++GK+  + ++ + +         
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNA 437

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++D+  + G M++A  +   + V+ D   W  ++G 
Sbjct: 438 LMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGG 472


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 166/417 (39%), Positives = 259/417 (62%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A   F+ ++ ++IV+WN+++  +AQ      A+ +  ++ +    P++ T
Sbjct: 474 MYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGT 533

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS- 119
           +  V+PACA  + L  G  IH  I++ G   D  + NAL DMYAKCG L  A+ +FN + 
Sbjct: 534 MVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTD 593

Query: 120 -FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +DEV++N++I  Y Q     E++S F +MRL     + V+F+  + A A LAA ++G 
Sbjct: 594 FTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGM 653

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             H   I+    ++  V NS++D Y + G++  + K+F+ +  KD+ SWN ++ GY + G
Sbjct: 654 AFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHG 713

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
             D AI LF  M+E  V  D VS++++L+AC H GLVE+G+K F  M     +KP   HY
Sbjct: 714 HGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHY 773

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACMVDLLGRAGL ++ +  IK +PVEPDA +WGALLG+CR++ NV+LG  A +HL  L+P
Sbjct: 774 ACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEP 833

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           ++  ++++LS++YA++G+W +A K R  M     KK PGCSWV+ +++V  F V D+
Sbjct: 834 RNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDK 890



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 164/336 (48%), Gaps = 1/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K      A  +F  + +++ VSW  M+A +A N   ++ L+L  +M + N   N V+
Sbjct: 272 LYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVS 331

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +   A A    L  GKEIH   +++ ++ D+ +   L  MYAKCG    A+ +F  + 
Sbjct: 332 AVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQ 391

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V+++ +I    QT    E+LSLF EM+   MK + V+ M  + ACA+L+ +K GK 
Sbjct: 392 GRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKS 451

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH  T++  + + L    +++  Y + G    A   F+ +  +D  +WN+LI GY  +G+
Sbjct: 452 IHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGD 511

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              AI++F  +R   +  D  + + ++ AC+    +++G      +     +        
Sbjct: 512 PYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNA 571

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++D+  + G +  A  L        D   W  ++ A
Sbjct: 572 LIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 157/280 (56%), Gaps = 3/280 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  + ++++V+WNAM+A  +Q+    +A+   R M +    P+SV+
Sbjct: 173 MYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVS 232

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L N+ P   +   +   + IH  + R+  +F   ++N L D+Y+KCG +++A+ VF+ + 
Sbjct: 233 LLNLFPGICKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMV 290

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D+VS+  ++ GY+      E L LF +M+L  ++ + VS + A  A A    +++GKE
Sbjct: 291 DQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKE 350

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +++ + + + VA  ++  Y + G  + A ++F  L  +D  +W+ +I      G 
Sbjct: 351 IHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGY 410

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
            + A++LF+ M+   +  + V+ ++IL AC+   L++ GK
Sbjct: 411 PEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGK 450



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 195/418 (46%), Gaps = 42/418 (10%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F +    + + WN+M+  + +++   +AL++   M      P+  T T VL AC  
Sbjct: 82  ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTG 141

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              L+ G   H  I R+GL  D+F+   L DMY+K G L  A+ VF+ +  RD V++N +
Sbjct: 142 ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAM 201

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I G SQ+ D  E++  F  M+L+G++   VS +        L+ I+  + IHG   R+  
Sbjct: 202 IAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF 261

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            +   V+N ++D Y++ G +D+A ++FD +  +D  SW T++ GY   G     + LF+ 
Sbjct: 262 SSA--VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDK 319

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD---EMQADS----VKPTEMHYA---- 298
           M+   V  + VS ++   A +    +EKGK+      + + DS      P  + YA    
Sbjct: 320 MKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGE 379

Query: 299 --------------------CMVDLLGRAGLMEDAVKL---IKNLPVEPDANIWGALLGA 335
                                ++  L + G  E+A+ L   ++N  ++P+     ++L A
Sbjct: 380 TEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPA 439

Query: 336 CRIYGNVELGAWAAEHLFMLKP---QHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390
           C     ++LG   + H F +K            L +MYA+ G +  A      M SR+
Sbjct: 440 CADLSLLKLG--KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRD 495



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 114/223 (51%), Gaps = 13/223 (5%)

Query: 53  NEFPN--SVTLTN------VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104
           +EFP+  S T TN      +L +C     L P  +IHA+II  G      +T+ L ++Y+
Sbjct: 19  SEFPSLSSSTYTNYLHYPRLLSSCKH---LNPLLQIHAQIIVSGFKHHHSITH-LINLYS 74

Query: 105 KCGCLNLAQNVFNISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMG 163
                +LA++VF+ +     + +N +I  Y+++   +E+L ++  M   G++ D  +F  
Sbjct: 75  LFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTF 134

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
            + AC     +++G   HG   R+ L   +F+   ++D Y++ G +  A ++FD +P +D
Sbjct: 135 VLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRD 194

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
             +WN +I G     +   A++ F +M+  GV    VS + + 
Sbjct: 195 VVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLF 237



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 80/171 (46%), Gaps = 5/171 (2%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           +S+C +L  + Q   IH   I      H  + + +++ Y+   + DLA  +FD  P    
Sbjct: 39  LSSCKHLNPLLQ---IHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSR 94

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
             WN++I  Y    + + A+ ++  M E G+  D  ++  +L AC+    +++G  +  E
Sbjct: 95  ILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGE 154

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +    ++      A +VD+  + G ++ A ++   +P + D   W A++  
Sbjct: 155 IDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAG 204


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 159/414 (38%), Positives = 254/414 (61%), Gaps = 2/414 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EA  LF  + +++ ++W  MV  F QN LE +AL++ R M       +  T  ++L AC 
Sbjct: 224 EARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACG 283

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
               L  GK+IHA IIR   + ++F+ +AL DMY+KC  + LA+ VF  ++ ++ +S+  
Sbjct: 284 ALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTA 343

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           LIVGY Q     E++ +FSEM+  G+  D  +    IS+CANLA++++G + H + +   
Sbjct: 344 LIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSG 403

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L  ++ V+N+++  Y + G I+ A+++FD +   D  SW  L+ GY   G     I+LFE
Sbjct: 404 LMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFE 463

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            M   GV  D V++I +L+ACS  G VEKG+ YF  MQ D  + P + HY CM+DL  R+
Sbjct: 464 KMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRS 523

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           G +++A + IK +P+ PDA  WG LL ACR+ G++E+G WAAE+L  + PQ+   Y+LL 
Sbjct: 524 GKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLC 583

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFTPG 421
           +M+A  G+W+E +++R  M+ R+ KK PGCSW++ +++V  F  +D+    + G
Sbjct: 584 SMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKG 637



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/450 (24%), Positives = 208/450 (46%), Gaps = 84/450 (18%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF--PNSVTLTNVLPACARG 71
           LF ++ +++IVS+NA++A F+      +A+++   +   +    P+ +T++ ++ A +  
Sbjct: 94  LFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASAL 153

Query: 72  HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK-------------------------- 105
                GK+ H +I+R G   + F+ + L DMYAK                          
Sbjct: 154 GDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMI 213

Query: 106 -----CGCLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
                C  +  A+ +F + + RD +++  ++ G++Q    SE+L +F  MR  G+  D  
Sbjct: 214 TGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQY 273

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           +F   ++AC  L+A++QGK+IH   IR     ++FV ++++D Y++   I LA  +F  +
Sbjct: 274 TFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRM 333

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
             K+  SW  LI+GYG  G  + A+ +F  M+ DG+  D  +  +++++C++   +E+G 
Sbjct: 334 TCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGA 393

Query: 280 KYFDEMQADSVKPTEMHYA----CMVDLLGRAGLMEDAVKLIKNLP-------------- 321
           ++       ++    MHY      +V L G+ G +EDA +L   +               
Sbjct: 394 QF----HCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGY 449

Query: 322 --------------------VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC- 360
                               V+PD   +  +L AC   G VE G     +   ++  H  
Sbjct: 450 AQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKG---RSYFHSMQKDHGI 506

Query: 361 ----GYYILLSNMYAEAGKWDEASKVRELM 386
                +Y  + ++Y+ +GK  EA +  + M
Sbjct: 507 VPIDDHYTCMIDLYSRSGKLKEAEEFIKQM 536



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 143/281 (50%), Gaps = 26/281 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  +  KNI+SW A++  + QN    +A+++  EM      P+  T
Sbjct: 316 MYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYT 375

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+ +CA    L  G + H   +  GL   + ++NAL  +Y KCG +  A  +F+ +S
Sbjct: 376 LGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMS 435

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           F D+VS+  L+ GY+Q     E++ LF +M   G+K D V+F+G +SAC+    +++G+ 
Sbjct: 436 FHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRS 495

Query: 180 I-------HG-VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTL 230
                   HG V I  H          ++D Y+RSG++  A +    +P+  D+  W TL
Sbjct: 496 YFHSMQKDHGIVPIDDHY-------TCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTL 548

Query: 231 ILGYGMLGEVD----TAINLFEAMREDGVGYDPVSYIAILT 267
           +    + G+++     A NL E   +     +P SY+ + +
Sbjct: 549 LSACRLRGDMEIGKWAAENLLEIDPQ-----NPASYVLLCS 584



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 176/417 (42%), Gaps = 88/417 (21%)

Query: 45  LVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL-NFDLFLTNALTDMY 103
           ++R +P     P +  L ++L A     + + G+   AR +   + + +LF  NAL    
Sbjct: 31  ILRTLP---HPPPTYLLNHLLTA-----YGKAGRHARARRVFDAMPHPNLFTYNALLSTL 82

Query: 104 AKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV---- 158
           A    L+  + +F +++ RD VSYN +I G+S     ++++ ++  + LL     V    
Sbjct: 83  AHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVY--LALLQADSSVRPSR 140

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT-------------- 204
           ++    + A + L     GK+ H   +R     + FV + ++D Y               
Sbjct: 141 ITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDE 200

Query: 205 -----------------RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                            R   ++ A ++F+ +  +DS +W T++ G+   G    A+ +F
Sbjct: 201 VDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIF 260

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGK---------KYFDEM-----------QA 287
             MR  G+  D  ++ +ILTAC     +E+GK         +Y D +           + 
Sbjct: 261 RRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKC 320

Query: 288 DSVKPTE-----------MHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALL 333
            S+K  E           + +  ++   G+ G  E+AV++   +    ++PD    G+++
Sbjct: 321 RSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVI 380

Query: 334 GACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN----MYAEAGKWDEASKVRELM 386
            +C    ++E GA    H   L      +YI +SN    +Y + G  ++A ++ + M
Sbjct: 381 SSCANLASLEEGAQF--HCLAL-VSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEM 434


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  333 bits (855), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 169/407 (41%), Positives = 252/407 (61%), Gaps = 2/407 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  +  K++VSWNAM+A +AQ     +AL L  +M   N  PN  T+ +VL ACA+
Sbjct: 214 ARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQ 273

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF-RDEVSYNIL 129
            + L  G  + + I  +GL  +L L NAL DMY+KCG L  A+ +F+    RD +S+N++
Sbjct: 274 SNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVM 333

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY+      E+L+LF EM   G++   ++F+  + +CA+L AI  GK IH    +   
Sbjct: 334 IGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFN 393

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
                ++ S++D Y + G I  A ++FD + +K  ASWN +I G  M G+ D A  LF  
Sbjct: 394 SVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSK 453

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAG 308
           M  DG+  + ++++ IL+AC H GLV+ G+++F  M  D  + P   HY CM+DLLGRAG
Sbjct: 454 MSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAG 513

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
           L E+A  L++N+ V+PD  IWG+LLGACR +G VELG   AE LF L+P + G Y+LLSN
Sbjct: 514 LFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSN 573

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           +YA AGKWD+ +++R  +  R  KK PGC+ ++  + V +F+V D++
Sbjct: 574 IYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKV 620



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 124/476 (26%), Positives = 212/476 (44%), Gaps = 89/476 (18%)

Query: 2   YAKSSRPAEASY---LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           ++  SR  + SY   LF++I E N+  WN+M+   + +     AL     M      PNS
Sbjct: 70  FSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNS 129

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T   +L +CA+      GK+IHA +++ G   D+F+  +L +MYA+ G +N AQ VF+ 
Sbjct: 130 YTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQ 189

Query: 118 ------ISF-------------------------RDEVSYNILIVGYSQTSDCSESLSLF 146
                 ISF                         +D VS+N +I GY+Q     E+L LF
Sbjct: 190 SNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLF 249

Query: 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
            +MR   +  +  + +  +SACA   A+  G  +      + L ++L + N+++D Y++ 
Sbjct: 250 EDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKC 309

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           G +  A ++FD +  +D  SWN +I GY  +     A+ LF  M   GV    +++++IL
Sbjct: 310 GDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSIL 369

Query: 267 TACSHGGLVEKGK-----------------------------------KYFDEMQADSVK 291
            +C+H G ++ GK                                   + FD M+  S+ 
Sbjct: 370 PSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLA 429

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELG--- 345
                +  M+  L   G  + A +L   +    +EP+   +  +L AC+  G V+LG   
Sbjct: 430 S----WNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQF 485

Query: 346 --AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSW 399
             +   ++    K QH G  I   ++   AG ++EA     L+++ E K + G  W
Sbjct: 486 FSSMVQDYKISPKSQHYGCMI---DLLGRAGLFEEA---ESLLQNMEVKPD-GAIW 534



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 141/296 (47%), Gaps = 35/296 (11%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYA--KCGCLNLAQNVFN-ISFRDEVSYNILI 130
           +R  K+IHA II+ GL+  LF  + L +  A  + G ++ A ++FN I   +   +N +I
Sbjct: 42  IRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMI 101

Query: 131 VGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH 190
            G S +   + +L  F  M   G++ +  +F   + +CA LA+  +GK+IH   ++    
Sbjct: 102 RGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFV 161

Query: 191 THLFVANSILDFYTRSGR-------------------------------IDLANKIFDCL 219
           + +F+  S+++ Y +SG                                +D A ++FD +
Sbjct: 162 SDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEM 221

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
           PVKD  SWN +I GY  +G    A+ LFE MR+  V  +  + +++L+AC+    ++ G 
Sbjct: 222 PVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGN 281

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                ++   +         ++D+  + G ++ A +L  ++ +E D   W  ++G 
Sbjct: 282 SMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDM-LERDVISWNVMIGG 336



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 134/271 (49%), Gaps = 9/271 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  LF ++ E++++SWN M+  +       +AL L REM      P  +T
Sbjct: 305 MYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEIT 364

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++LP+CA    +  GK IHA I +   +    L+ +L D+YAKCG +  A+ VF+ + 
Sbjct: 365 FLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMK 424

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +   S+N +I G +      ++  LFS+M   G++ + ++F+G +SAC +   +  G++
Sbjct: 425 IKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQ 484

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI-----L 232
                ++ + +         ++D   R+G  + A  +   + VK D A W +L+      
Sbjct: 485 FFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDH 544

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
           G   LGE+  A  LFE   ++   Y  +S I
Sbjct: 545 GRVELGEL-VAERLFELEPDNPGAYVLLSNI 574



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDF--YTRSGRIDLANKIFDCLPVKDSASWNTL 230
           +I+  K+IH   I+  LH  LF  + +++F   +RSG I  A  +F+ +   +   WN++
Sbjct: 41  SIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSM 100

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           I G  M      A+  F  M   GV  +  ++  +L +C+      +GK+    +     
Sbjct: 101 IRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGF 160

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
                 +  ++++  ++G M +A +L+ +     DA  + AL+    ++G ++     A 
Sbjct: 161 VSDVFIHTSLINMYAQSGEMNNA-QLVFDQSNFRDAISFTALIAGYALWGYMD----RAR 215

Query: 351 HLFMLKP-QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394
            LF   P +    +  +   YA+ G+  EA  + E M+      N
Sbjct: 216 QLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPN 260


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  333 bits (854), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 163/417 (39%), Positives = 260/417 (62%), Gaps = 2/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  +   A  +   + E ++VSW A+++ +AQ+ L  +AL+  +EM       +++ 
Sbjct: 459 MYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIG 518

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            ++ + ACA    L  G++IHA+    G + DL + NAL  +YA+CG +  A   F  I 
Sbjct: 519 FSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKID 578

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+N LI G++Q+  C ++L +F++M    ++    +F  A+SA AN+A IKQGK+
Sbjct: 579 AKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQ 638

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH + I++   + + V+N+++ FY + G I+ A + F  +P K+  SWN +I GY   G 
Sbjct: 639 IHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGY 698

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A+NLFE M++ G   + V+++ +L+ACSH GLV KG  YF+ M  +  + P   HYA
Sbjct: 699 GNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYA 758

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDL+ RAG +  A K I+ +P+EPDA IW  LL AC ++ NVE+G +AA+HL  L+P+
Sbjct: 759 CVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPE 818

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
               Y+LLSNMYA +GKWD   + R++M++R  KK PG SW++ ++ V  F V DR+
Sbjct: 819 DSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRL 875



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 181/353 (51%), Gaps = 5/353 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK+     A  +F N+  K+ VSW AM++ F+QN  E +A+ L  EM     FP    
Sbjct: 156 LYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYV 215

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++VL  C +      G+++HA + + G + + ++ NAL  +Y++      A+ VF+ + 
Sbjct: 216 FSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQ 275

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +DEVS+N LI G +Q      +L LF++M+   +K D V+    +SACA+  A+ +G++
Sbjct: 276 SKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQ 335

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+  + + + V  ++LD Y     I  A+++F     ++   WN +++ +G L  
Sbjct: 336 LHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDN 395

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +  +  +F  M+  G+  +  +Y +IL  C+  G ++ G++   ++     +      + 
Sbjct: 396 LSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSV 455

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
           ++D+  + G ++ A  +++ L  E D   W AL+     Y    L A A +H 
Sbjct: 456 LIDMYAKHGKLDTAHVILRTL-TEDDVVSWTALISG---YAQHNLFAEALKHF 504



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 186/404 (46%), Gaps = 39/404 (9%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F ++  +++ SW+ +++ F + ++  + L L   M   N  P  ++  +VL AC+ GH 
Sbjct: 67  VFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACS-GHR 125

Query: 74  L--RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILI 130
           +  R  ++IHARII  GL     ++N L  +YAK G +  A+ VF N+  +D VS+  +I
Sbjct: 126 IGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMI 185

Query: 131 VGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH 190
            G+SQ     E++ LF EM   G+      F   +S C  +     G+++H +  +    
Sbjct: 186 SGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSS 245

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
              +V N+++  Y+R      A K+F  +  KD  S+N+LI G    G  D A+ LF  M
Sbjct: 246 LETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKM 305

Query: 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL------- 303
           + D +  D V+  ++L+AC+  G + KG++    +    +    +    ++DL       
Sbjct: 306 KRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDI 365

Query: 304 ------------------------LGRAGLMEDAVKLIKNLPVE---PDANIWGALLGAC 336
                                    G+   + ++ ++ + + ++   P+   + ++L  C
Sbjct: 366 KTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTC 425

Query: 337 RIYGNVELGAWAAEHLFMLKPQHCGYYI-LLSNMYAEAGKWDEA 379
              G ++LG      +     Q   Y   +L +MYA+ GK D A
Sbjct: 426 TSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTA 469



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 165/334 (49%), Gaps = 2/334 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y++      A  +F  +  K+ VS+N++++  AQ      AL+L  +M      P+ VT
Sbjct: 257 LYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVT 316

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + ++L ACA    L  G+++H+ +I+ G++ D+ +  AL D+Y  C  +  A  +F    
Sbjct: 317 VASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQ 376

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             + V +N+++V + +  + SES  +F +M++ G+  +  ++   +  C ++ A+  G++
Sbjct: 377 TENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQ 436

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+     +++V + ++D Y + G++D A+ I   L   D  SW  LI GY     
Sbjct: 437 IHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNL 496

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+  F+ M   G+  D + + + ++AC+    + +G++   +               
Sbjct: 497 FAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNA 556

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +V L  R G +++A    + +  + D+  W  L+
Sbjct: 557 LVSLYARCGRIKEAYLEFEKIDAK-DSISWNGLI 589



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 137/320 (42%), Gaps = 44/320 (13%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N  T   +L  C     L   K++H +I++ G   +  L N L D+Y   G L+    VF
Sbjct: 9   NCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVF 68

Query: 117 -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA-NLAAI 174
            ++  R   S++ +I G+ +    +  L LFS M    +    +SF   + AC+ +   I
Sbjct: 69  EDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGI 128

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           +  ++IH   I   L     ++N ++  Y ++G I  A K+FD L  KDS SW  +I G+
Sbjct: 129 RYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGF 188

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG---------------- 278
              G  + AI+LF  M   G+   P  + ++L+ C+   L + G                
Sbjct: 189 SQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLET 248

Query: 279 -------------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319
                              +K F +MQ+      E+ +  ++  L + G  + A++L   
Sbjct: 249 YVCNALVTLYSRMPNFVSAEKVFSKMQSKD----EVSFNSLISGLAQQGFSDGALELFTK 304

Query: 320 LP---VEPDANIWGALLGAC 336
           +    ++PD     +LL AC
Sbjct: 305 MKRDYLKPDCVTVASLLSAC 324



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 97/209 (46%), Gaps = 12/209 (5%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M   G+  +  +++  +  C N  ++ + K++HG  ++        + N ++D Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +D   K+F+ +P +   SW+ +I G+      +  ++LF  M E+ V    +S+ ++L A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 269 CSHGGLVEKGKKYFDEMQA----DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           CS   +   G +Y +++ A      +  + +    ++ L  + GL+  A K+  NL  + 
Sbjct: 121 CSGHRI---GIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTK- 176

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLF 353
           D+  W A++      G  E     A HLF
Sbjct: 177 DSVSWVAMISGFSQNGYEE----EAIHLF 201


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 160/413 (38%), Positives = 252/413 (61%), Gaps = 2/413 (0%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           AEA  LF  I E++ ++W  MV    QN LE +AL + R M       +  T  ++L AC
Sbjct: 228 AEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTAC 287

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
                L  GK+IHA I R     ++F+ +AL DMY+KC  + LA+ VF  + +++ +S+ 
Sbjct: 288 GALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWT 347

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            +IVGY Q     E++ +FSEM+  G+K D  +    IS+CANLA++++G + H + +  
Sbjct: 348 AMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVS 407

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            L  ++ V+N+++  Y + G I+ A+++FD +   D  SW  L++GY   G+    I+LF
Sbjct: 408 GLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLF 467

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGR 306
           E M   GV  D V++I +L+ACS  GLV+KG+ YF  MQ D  + P + HY CM+DL  R
Sbjct: 468 EKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSR 527

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366
           +G ++ A + IK +P  PDA  W  LL ACR+ G++E+G WAAE+L  L PQ+   Y+LL
Sbjct: 528 SGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLL 587

Query: 367 SNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
            +M+A  G+W++ +K+R  M+ R+ KK PGCSW++ +++V  F  +D+   F+
Sbjct: 588 CSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFS 640



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 128/247 (51%), Gaps = 9/247 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  +  KNI+SW AM+  + QN    +A+++  EM      P+  T
Sbjct: 321 MYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFT 380

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+ +CA    L  G + H   +  GL   + ++NAL  +Y KCG +  A  +F+ +S
Sbjct: 381 LGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMS 440

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           F D+VS+  L++GY+Q     E++ LF +M   G+K D V+F+G +SAC+    + +G+ 
Sbjct: 441 FHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRS 500

Query: 180 IHGVTIRKH----LHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLILGY 234
                 + H    L  H      ++D Y+RSG +  A +    +P   D+  W TL+   
Sbjct: 501 YFHSMQQDHDIVPLDDHY---TCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSAC 557

Query: 235 GMLGEVD 241
            + G+++
Sbjct: 558 RLRGDME 564



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 172/417 (41%), Gaps = 88/417 (21%)

Query: 45  LVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL-NFDLFLTNALTDMY 103
           ++R +P     P+   L N L        L P    HAR +   +   +L   N+L    
Sbjct: 36  ILRTLP----HPSPTYLLNTLLTAYASSGLLP----HARRVFDAMPGRNLVTGNSLLSAL 87

Query: 104 AKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL--LGMKHDVVS 160
           A+ G +   + +F ++  RD VSYN L+ G+S+    + +   +  +     G++   ++
Sbjct: 88  ARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRIT 147

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD--- 217
             G +   + L     G+++H   +R     + F  + ++D Y + G I  A ++FD   
Sbjct: 148 MSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEME 207

Query: 218 ----------------------------CLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
                                        +  +DS +W T++ G    G    A+++F  
Sbjct: 208 GKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRR 267

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKK---------YFDEM-----------QADS 289
           MR +GVG D  ++ +ILTAC     +E+GK+         Y D +           +  S
Sbjct: 268 MRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRS 327

Query: 290 VKPTE-----------MHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGA 335
           V+  E           + +  M+   G+ G  E+AV++   +    ++PD    G+++ +
Sbjct: 328 VRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISS 387

Query: 336 CRIYGNVELGAW--AAEHLFMLKPQHCGYYILLSN----MYAEAGKWDEASKVRELM 386
           C    ++E GA       +  L+P     Y+ +SN    +Y + G  ++A ++ + M
Sbjct: 388 CANLASLEEGAQFHCLALVSGLRP-----YVTVSNALVTLYGKCGSIEDAHRLFDEM 439



 Score = 38.5 bits (88), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 180 IHGVTIRKHLH-THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +H + +R   H +  ++ N++L  Y  SG +  A ++FD +P ++  + N+L+      G
Sbjct: 32  VHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAG 91

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
            V     LF ++ +     D VSY A+L   S
Sbjct: 92  LVRDMERLFTSLPQ----RDAVSYNALLAGFS 119


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  330 bits (846), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 159/418 (38%), Positives = 252/418 (60%), Gaps = 2/418 (0%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           +S    ++  LFH + E++ +SW  M+    QN LE +A+ L R+M       +  T  +
Sbjct: 216 RSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGS 275

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           VL AC     L+ GKEIH  IIR G N ++F+ +AL DMY KC  +  A+ VF  ++ ++
Sbjct: 276 VLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKN 335

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            VS+  ++VGY Q     E++ +F +M+  G++ D  +    IS+CANLA++++G + H 
Sbjct: 336 VVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHC 395

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             +   L + + V+N+++  Y + G I+ +N++FD +  +D  SW  L+ GY   G+ + 
Sbjct: 396 QALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANE 455

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMV 301
            I+LFE M   G+  D V++IA+L+ACS  GLVE+G++YF+ M  D  + P   HY CM+
Sbjct: 456 TIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMI 515

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361
           DL GRAG +E+A   I  +P  PD+  W  LL +CR+YGN E+G WAAE L  L PQ+  
Sbjct: 516 DLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPA 575

Query: 362 YYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
            YILLS++YA  GKW   +++R  M+ + A+K PG SW++ + +V  F  +D+   F+
Sbjct: 576 GYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFS 633



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 203/449 (45%), Gaps = 73/449 (16%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVT 60
           Y+KS   +    +F  +  ++ VSWN++++ +      ++A++    M        N +T
Sbjct: 81  YSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRIT 140

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
            + +L   +    +  G++IH +I++ G    +F+ ++L DMYAK G +++A  VF+   
Sbjct: 141 FSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQ 200

Query: 118 -----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                        +  RD +S+  +I G  Q    +E++ LF +
Sbjct: 201 ERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRD 260

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           MR  GM  D  +F   ++AC  L A+K+GKEIH + IR   + ++FV ++++D Y +   
Sbjct: 261 MRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRS 320

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +  A  +F  +  K+  SW  +++GYG  G  + A+ +F  M+ +G+  D  +  +++++
Sbjct: 321 VRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISS 380

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP------- 321
           C++   +E+G ++  +     +         ++ L G+ G +ED+ +L   +        
Sbjct: 381 CANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSW 440

Query: 322 ---------------------------VEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
                                      ++PDA  + A+L AC   G VE G    E   M
Sbjct: 441 TALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFES--M 498

Query: 355 LKPQ----HCGYYILLSNMYAEAGKWDEA 379
           LK         +Y  + +++  AG+ +EA
Sbjct: 499 LKDHGIIPFSDHYTCMIDLFGRAGRLEEA 527



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 142/273 (52%), Gaps = 13/273 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  +A KN+VSW AM+  + QN    +A+++  +M  +   P+  T
Sbjct: 314 MYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFT 373

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+ +CA    L  G + H + +  GL   + ++NAL  +Y KCG +  +  +F+ +S
Sbjct: 374 LGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMS 433

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           FRDEVS+  L+ GY+Q    +E++ LF  M + G+K D V+F+  +SAC+    +++G++
Sbjct: 434 FRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQ 493

Query: 180 IHGVTIRKH----LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGY 234
                ++ H       H      ++D + R+GR++ A    + +P   DS  W TL+   
Sbjct: 494 YFESMLKDHGIIPFSDHY---TCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSC 550

Query: 235 GMLGEVD----TAINLFEAMREDGVGYDPVSYI 263
            + G  +     A +L E   ++  GY  +S I
Sbjct: 551 RLYGNEEIGKWAAESLLELDPQNPAGYILLSSI 583



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 141/322 (43%), Gaps = 71/322 (22%)

Query: 94  FLTNALTDMYAKCGCLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL 152
           F  N +   Y+K G L+  Q +F+I   RD VS+N LI GY       E++  ++ M   
Sbjct: 72  FSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKD 131

Query: 153 G-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211
           G +  + ++F   +   ++   +  G++IHG  ++     ++FV +S++D Y + G + +
Sbjct: 132 GVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSV 191

Query: 212 ANKIFD-------------------------------CLPVKDSASWNTLILGYGMLGEV 240
           A+++FD                                +  +DS SW T+I G    G  
Sbjct: 192 ASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLE 251

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGL--VEKGK------------------- 279
             A++LF  MR++G+  D  ++ ++LTAC  GGL  +++GK                   
Sbjct: 252 AEAMDLFRDMRQEGMAMDQYTFGSVLTAC--GGLRALKEGKEIHTLIIRSGYNHNVFVGS 309

Query: 280 ------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---VEP 324
                       +Y + +         + +  M+   G+ G  E+AV++  ++    +EP
Sbjct: 310 ALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEP 369

Query: 325 DANIWGALLGACRIYGNVELGA 346
           D    G+++ +C    ++E GA
Sbjct: 370 DDFTLGSVISSCANLASLEEGA 391



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 5/145 (3%)

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C       Q K++H + I+   +   F+ N++++ Y++ G I  A  +FD +P  +S SW
Sbjct: 15  CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 228 NTLILGYGMLGEVDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
           NT++  Y   G++ T   +F  M   DGV ++ +    I     +G +VE  K Y   M+
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSL----ISGYVCYGSVVEAVKTYNSMMK 130

Query: 287 ADSVKPTEMHYACMVDLLGRAGLME 311
              +    + ++ M+ L+   G ++
Sbjct: 131 DGVLNLNRITFSTMLLLVSSQGCVD 155


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 165/416 (39%), Positives = 261/416 (62%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A  L+      ++V  + +++ +  N +  KALQ+ R +      PN+VT
Sbjct: 387 IYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVT 446

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VLPACA    L  G+EIH  ++R       ++ +AL DMYAKCG L+L+  +F+ +S
Sbjct: 447 VASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMS 506

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +DEV++N +I  +SQ  +  E+L LF +M + G+K++ V+   A+SACA+L AI  GKE
Sbjct: 507 LKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKE 566

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHGV I+  +   +F  ++++D Y + G ++LA ++F+ +P K+  SWN++I  YG  G 
Sbjct: 567 IHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGL 626

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYA 298
           V  +++    M+E+G   D V+++A+++AC+H GLVE+G + F  M  +  + P   H+A
Sbjct: 627 VKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFA 686

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDL  R+G ++ A++ I ++P +PDA IWGALL ACR++ NVEL   A++ LF L P 
Sbjct: 687 CMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPG 746

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + GYY+L+SN+ A AG+WD  SKVR LMK  +  K PG SWV   +    FV +D+
Sbjct: 747 NSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDK 802



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 167/336 (49%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+ +    +A   F  +  ++ V WN M+  + +      A++L R M +    PN  T
Sbjct: 185 MYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFAT 244

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L   L  CA    L  G ++H+  ++ GL  ++ + N L  MYAKC CL+ A  +F +  
Sbjct: 245 LACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLP 304

Query: 121 RDE-VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           RD+ V++N +I G  Q     E+L LF +M   G + D V+ +  + A  +L  +KQGKE
Sbjct: 305 RDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKE 364

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  IR  +H   F+ ++++D Y +   +  A  ++D     D    +T+I GY + G 
Sbjct: 365 VHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGM 424

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ +F  + E  +  + V+  ++L AC+    +  G++    +  ++ +      + 
Sbjct: 425 SEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESA 484

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++D+  + G ++ +  +   + ++ D   W +++ +
Sbjct: 485 LMDMYAKCGRLDLSHYIFSKMSLK-DEVTWNSMISS 519



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 192/420 (45%), Gaps = 45/420 (10%)

Query: 1   MYAKSSRPAEASYLFHNI---AEKNIVSWNAMVANFAQNRLELKALQLVREMPIH--NEF 55
           MY  + R  +A  +F  +   A  + + WN ++  F        A+    +M  H     
Sbjct: 79  MYVLARRFRDAVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPS 138

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P++ TL  V+ +CA    +  G+ +H      GL  D+++ +AL  MY+  G L  A++ 
Sbjct: 139 PDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDA 198

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ + +RD V +N+++ GY +  D   ++ LF  MR+ G + +  +    +S CA  A +
Sbjct: 199 FDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADL 258

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G ++H + ++  L   + VAN++L  Y +   +D A ++F+ LP  D  +WN +I G 
Sbjct: 259 LSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGC 318

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G +D A+ LF  M   G   D V+ +++L A +    +++GK+    +  + V    
Sbjct: 319 VQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDA 378

Query: 295 MHYACMVDLL---------------GRA----------------GLMEDAVKLIKNL--- 320
              + +VD+                 RA                G+ E A+++ + L   
Sbjct: 379 FLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQ 438

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH---CGYYILLSNMYAEAGKWD 377
            ++P+A    ++L AC     + LG     H ++L+  +   C     L +MYA+ G+ D
Sbjct: 439 CIKPNAVTVASVLPACASISALPLG--QEIHGYVLRNAYEGKCYVESALMDMYAKCGRLD 496



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 19/202 (9%)

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHL---HTHLFVANSILDFYTRSGRIDLANKIFD 217
            +  +  C +   +  G +IH   +       H HL +   +L  Y  + R   A  +F 
Sbjct: 35  LLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFS 94

Query: 218 CLPVKDSAS---WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA--ILTACSHG 272
            LP   + S   WN LI G+   G    A+  +  M        P ++    ++ +C+  
Sbjct: 95  ALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAAL 154

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
           G V  G+      +A  +       + ++ +   AGL+ DA      +P   D  +W  +
Sbjct: 155 GAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWR-DCVLWNVM 213

Query: 333 L----------GACRIYGNVEL 344
           +          GA R++ N+ +
Sbjct: 214 MDGYIKAGDVGGAVRLFRNMRV 235


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 167/415 (40%), Positives = 251/415 (60%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y      + A  LF  I + NI  WN ++  +A N     A+QL  +M  +   P++ T
Sbjct: 119 LYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFT 178

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL ACA    +  G+EIH  +++ G   D+F+  AL DMYAKCGC+  A+ VF+ I 
Sbjct: 179 FPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKIL 238

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V +N ++  YSQ       LSL SEM L G++    + + AISA A+ AA+ QG+E
Sbjct: 239 VRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRE 298

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG++ R+   +H  V  +++D Y + G + +A  +F+ L VK   SWN +I GY M G 
Sbjct: 299 LHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGH 358

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++LFE M       D ++++ +L+ACSHGGL+E+G  +F+ M  D  + PT  HY 
Sbjct: 359 ATEALDLFEEMNRVAKP-DHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYT 417

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLG +G +++A  LI  + V PD+ +WGALL +C+I+ NVELG  A E L  L+P 
Sbjct: 418 CMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPD 477

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             G Y++LSN+YA+AGKW+  +K+R+LM  R  KK+  CSW++ +++V  F+  D
Sbjct: 478 DAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGD 532



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 165/356 (46%), Gaps = 23/356 (6%)

Query: 25  SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT-------NVLPACARGHFLRPG 77
           S+ +    F  N+  LKA+         N    S  LT       ++L +C     ++PG
Sbjct: 40  SFTSSAPQFDNNQTHLKAIP-----SCSNPHAESTCLTPTYSNYASLLQSCIARKAIKPG 94

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           K++HA++   G  FD  +   L ++Y  C  L+ A+ +F+ I   +   +N+LI GY+  
Sbjct: 95  KQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWN 154

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
                ++ L+ +M   G+  D  +F   + ACA L+AI+ G+EIH   ++      +FV 
Sbjct: 155 GPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVG 214

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
            +++D Y + G +  A ++FD + V+D+  WN+++  Y   G  D  ++L   M   G+ 
Sbjct: 215 AALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLR 274

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
               + +  ++A +    + +G++          +  +     +VD+  + G +  A  L
Sbjct: 275 PTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNL 334

Query: 317 IKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF-----MLKPQHCGYYILLS 367
            + L V+   + W A++    ++G+    A  A  LF     + KP H  +  +LS
Sbjct: 335 FERLGVKRVVS-WNAMITGYAMHGH----ATEALDLFEEMNRVAKPDHITFVGVLS 385


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/412 (38%), Positives = 250/412 (60%), Gaps = 2/412 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +A  LF  + +++ ++W  MV    QN L+L+AL + R M       +  T  ++L AC 
Sbjct: 230 DAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACG 289

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
               L  GK+IHA I R     ++F+ +AL DMY+KC  + LA+ VF  ++ R+ +S+  
Sbjct: 290 ALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTA 349

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +IVGY Q +   E++  FSEM++ G+K D  +    IS+CANLA++++G + H + +   
Sbjct: 350 MIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L  ++ V+N+++  Y + G I+ A+++FD +   D  SW  L+ GY   G+    I+LFE
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFE 469

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            M  +G+  D V++I +L+ACS  GLVEKG  YFD MQ D  + P + HY CM+DL  R+
Sbjct: 470 KMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRS 529

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           G  ++A + IK +P  PDA  W  LL +CR+ GN+E+G WAAE+L    PQ+   Y+LL 
Sbjct: 530 GRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLC 589

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
           +M+A  G+W E + +R  M+ R+ KK PGCSW++ +++V  F  +D+   F+
Sbjct: 590 SMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFS 641



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 139/277 (50%), Gaps = 26/277 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  +  +NI+SW AM+  + QN    +A++   EM +    P+  T
Sbjct: 322 MYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFT 381

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+ +CA    L  G + H   +  GL   + ++NAL  +Y KCG +  A  +F+ +S
Sbjct: 382 LGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMS 441

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
           F D+VS+  L+ GY+Q     E++ LF +M   G+K D V+F+G +SAC+    +++G  
Sbjct: 442 FHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCD 501

Query: 178 -----KEIHG-VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTL 230
                ++ HG V I  H          ++D Y+RSGR   A +    +P   D+  W TL
Sbjct: 502 YFDSMQKDHGIVPIDDHY-------TCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATL 554

Query: 231 ILGYGMLGEVD----TAINLFEAMREDGVGYDPVSYI 263
           +    + G ++     A NL E   +     +P SY+
Sbjct: 555 LSSCRLRGNMEIGKWAAENLLETDPQ-----NPASYV 586



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 147/358 (41%), Gaps = 71/358 (19%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P +  L ++L A A+   L   +    R+  +  + +LF  NAL    A    +   + +
Sbjct: 46  PPTFLLNHLLTAYAKSGRLARAR----RVFDEMPDPNLFTRNALLSALAHSRLVPDMERL 101

Query: 116 F-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAA 173
           F ++  RD VSYN LI G+S T   + S+ L+  + R   ++   ++    I   + L+ 
Sbjct: 102 FASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSD 161

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK----------- 222
              G  +H   +R     + FV + ++D Y + G I  A ++F  +  K           
Sbjct: 162 RALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITG 221

Query: 223 --------------------DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
                               DS +W T++ G    G    A+++F  MR +GVG D  ++
Sbjct: 222 LLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTF 281

Query: 263 IAILTACSHGGLVEKGKK---------YFDEM-----------QADSVKPTE-------- 294
            +ILTAC     +E+GK+         Y D +           +  S++  E        
Sbjct: 282 GSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTC 341

Query: 295 ---MHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGA 346
              + +  M+   G+    E+AV+    +    ++PD    G+++ +C    ++E GA
Sbjct: 342 RNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGA 399


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/412 (38%), Positives = 250/412 (60%), Gaps = 2/412 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +A  LF  + +++ ++W  MV    QN L+L+AL + R M       +  T  ++L AC 
Sbjct: 230 DAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACG 289

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
               L  GK+IHA I R     ++F+ +AL DMY+KC  + LA+ VF  ++ R+ +S+  
Sbjct: 290 ALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTA 349

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +IVGY Q +   E++  FSEM++ G+K D  +    IS+CANLA++++G + H + +   
Sbjct: 350 MIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L  ++ V+N+++  Y + G I+ A+++FD +   D  SW  L+ GY   G+    I+LFE
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFE 469

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            M  +G+  D V++I +L+ACS  GLVEKG  YFD MQ D  + P + HY CM+DL  R+
Sbjct: 470 KMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRS 529

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           G  ++A + IK +P  PDA  W  LL +CR+ GN+E+G WAAE+L    PQ+   Y+LL 
Sbjct: 530 GRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLC 589

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
           +M+A  G+W E + +R  M+ R+ KK PGCSW++ +++V  F  +D+   F+
Sbjct: 590 SMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFS 641



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 141/281 (50%), Gaps = 26/281 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  +  +NI+SW AM+  + QN    +A++   EM +    P+  T
Sbjct: 322 MYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFT 381

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+ +CA    L  G + H   +  GL   + ++NAL  +Y KCG +  A  +F+ +S
Sbjct: 382 LGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMS 441

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
           F D+VS+  L+ GY+Q     E++ LF +M   G+K D V+F+G +SAC+    +++G  
Sbjct: 442 FHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCD 501

Query: 178 -----KEIHG-VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTL 230
                ++ HG V I  H          ++D Y+RSGR   A +    +P   D+  W TL
Sbjct: 502 YFDSMQKDHGIVPIDDHY-------TCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATL 554

Query: 231 ILGYGMLGEVD----TAINLFEAMREDGVGYDPVSYIAILT 267
           +    + G ++     A NL E   +     +P SY+ + +
Sbjct: 555 LSSCRLRGNMEIGKWAAENLLETDPQ-----NPASYVLLCS 590



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 147/358 (41%), Gaps = 71/358 (19%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P +  L ++L A A+   L   +    R+  +  + +LF  NAL    A    +   + +
Sbjct: 46  PPTFLLNHLLTAYAKSGRLARAR----RVFDEMPDPNLFTRNALLSALAHSRLVPDMERL 101

Query: 116 F-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAA 173
           F ++  RD VSYN LI G+S T   + S+ L+  + R   ++   ++    I   + L+ 
Sbjct: 102 FASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSD 161

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK----------- 222
              G  +H   +R     + FV + ++D Y + G I  A ++F  +  K           
Sbjct: 162 RALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITG 221

Query: 223 --------------------DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
                               DS +W T++ G    G    A+++F  MR +GVG D  ++
Sbjct: 222 LLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTF 281

Query: 263 IAILTACSHGGLVEKGKK---------YFDEM-----------QADSVKPTE-------- 294
            +ILTAC     +E+GK+         Y D +           +  S++  E        
Sbjct: 282 GSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTC 341

Query: 295 ---MHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGA 346
              + +  M+   G+    E+AV+    +    ++PD    G+++ +C    ++E GA
Sbjct: 342 RNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGA 399


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  327 bits (839), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 164/416 (39%), Positives = 259/416 (62%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A  L+      ++V  + M++ +  N +  +ALQ+ R +      PN+VT
Sbjct: 387 IYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVT 446

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + +VLP CA    L  G++IH  ++R       ++ +AL DMYAKCG L+L+  +F  +S
Sbjct: 447 IASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMS 506

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +DEV++N +I  +SQ     E+L LF +M + G+K++ ++   A+SACA+L AI  GKE
Sbjct: 507 QKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKE 566

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHGVTI+  +   +F  ++++D Y + G ++LA ++F+ +P K+  SWN++I  YG  G 
Sbjct: 567 IHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGL 626

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYA 298
           V  +++L   M+E+G   D V+++A+++AC+H GLVE+G + F  M     + P   H+A
Sbjct: 627 VKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFA 686

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDL  R+G ++ A++ I ++P +PDA IWGALL ACR++ NVEL   A++ LF L P 
Sbjct: 687 CMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPA 746

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + GYY+L+SN+ A AG+WD  SKVR LMK  +  K PG SWV   +    FV +D+
Sbjct: 747 NSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDK 802



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 210/394 (53%), Gaps = 9/394 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  LF  + + ++V+WN M++   QN L ++A  L  +M      P+S+T
Sbjct: 286 MYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSIT 345

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L ++LPA    + L+ GKE+H  I+R  +N D+FL +AL D+Y KC  + +AQN+++ + 
Sbjct: 346 LVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAAR 405

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V  + +I GY       E+L +F  +    +K + V+    +  CA++AA+  G++
Sbjct: 406 AIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQ 465

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R       +V ++++D Y + GR+DL++ IF  +  KD  +WN++I  +   G+
Sbjct: 466 IHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGK 525

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A++LF  M  +G+ Y+ ++  A L+AC+    +  GK+         +K      + 
Sbjct: 526 PQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESA 585

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG----NVELGAWAAEHLFML 355
           ++D+  + G +E A+++ + +P + + + W +++ A   +G    +V L     E  +  
Sbjct: 586 LIDMYAKCGNLELALRVFEFMPDKNEVS-WNSIISAYGAHGLVKESVSLLHGMQEEGY-- 642

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
           KP H  +  L+S   A AG  +E  ++ + M  +
Sbjct: 643 KPDHVTFLALISAC-AHAGLVEEGVQLFQCMTKK 675



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 187/420 (44%), Gaps = 45/420 (10%)

Query: 1   MYAKSSRPAEASYLFHNI---AEKNIVSWNAMVANFAQNRLELKALQLVREMPIH--NEF 55
           MY  + R  +A  +F  +   A  + + WN ++  F        A+    +M  H     
Sbjct: 79  MYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPS 138

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P++ TL  V+ +CA    +  G+ +H      GL  D+++ +AL  MYA  G L  A++ 
Sbjct: 139 PDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDA 198

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ I  RD V +N+++ G  +  D   ++ LF  MR  G + +  +    +S CA  A +
Sbjct: 199 FDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADL 258

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G ++H + ++  L   + VAN++L  Y +   +D A ++F+ +P  D  +WN +I G 
Sbjct: 259 LSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGC 318

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G    A  LF  M+  G   D ++ +++L A +    +++GK+    +  + V    
Sbjct: 319 VQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDV 378

Query: 295 MHYACMVDLL---------------GRA----------------GLMEDAVKLIKNL--- 320
              + +VD+                 RA                G+ E+A+++ + L   
Sbjct: 379 FLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQ 438

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQHCGYYILLSNMYAEAGKWD 377
            ++P+A    ++L  C     + LG     H ++L+    + C     L +MYA+ G+ D
Sbjct: 439 CIKPNAVTIASVLPGCASMAALPLGQQI--HGYVLRNAYERKCYVESALMDMYAKCGRLD 496



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 77/191 (40%), Gaps = 9/191 (4%)

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHL---HTHLFVANSILDFYTRSGRIDLANKIFD 217
            +  +  C +   +  G +IH   +       H HL +   +L  Y  + R   A  +F 
Sbjct: 35  LLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFS 94

Query: 218 CLPVKDSAS---WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA--ILTACSHG 272
            LP   +AS   WN LI G+   G+   A+  +  M        P ++    ++ +C+  
Sbjct: 95  ALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAAL 154

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
           G +  G+      +A  +       + +V +   AGL+ +A      +P E D  +W  +
Sbjct: 155 GAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIP-ERDCVLWNVM 213

Query: 333 LGACRIYGNVE 343
           +  C   G+V+
Sbjct: 214 MDGCIKAGDVD 224


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  327 bits (838), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 163/417 (39%), Positives = 254/417 (60%), Gaps = 2/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +   + E+++VSW AM+A + Q+ L  +AL+L +EM       +++ 
Sbjct: 459 MYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIG 518

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            ++ + ACA    L  G++IHA+    G + DL + NAL  +YA+CG    A   F  I 
Sbjct: 519 FSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKID 578

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+N LI G++Q+  C E+L +FS+M   G++ ++ +F  A+SA AN A IKQGK+
Sbjct: 579 AKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQ 638

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH + I+    +    +N ++  Y++ G I+ A + F  +P K+  SWN +I GY   G 
Sbjct: 639 IHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGY 698

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++LFE M++ G+  + V+++ +L+ACSH GLV +G  YF  M  +  + P   HY 
Sbjct: 699 GSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYV 758

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGRA L+  A + I+ +P+EPDA IW  LL AC ++ N+E+G +AA HL  L+P+
Sbjct: 759 CVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPE 818

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
               Y+LLSNMYA +GKWD   + R++MK R  KK PG SW++ ++ +  F V DR+
Sbjct: 819 DSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRL 875



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 179/336 (53%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K+     A  +F  +  K+ VSW AM++  +QN  E +A+ L  +M      P    
Sbjct: 156 LYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYV 215

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++VL AC +    + G+++H  I++ GL+ + F+ NAL  +Y++ G L  A+ +F+ + 
Sbjct: 216 FSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMH 275

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +SYN LI G +Q      +L LF +M+L  MK D V+    +SACA++ A  +GK+
Sbjct: 276 RRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQ 335

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+  + + L +  S+LD Y +   I+ A++ F     ++   WN +++ YG LG 
Sbjct: 336 LHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGN 395

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +  +  +F  M+ +G+  +  +Y +IL  C+  G ++ G++   ++     +      + 
Sbjct: 396 LSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSV 455

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++D+  + G ++ A  +++ L  E D   W A++  
Sbjct: 456 LIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIAG 490



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 169/344 (49%), Gaps = 2/344 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y++      A  +F  +  ++ +S+N++++  AQ     +ALQL  +M +    P+ VT
Sbjct: 257 LYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVT 316

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + ++L ACA       GK++H+ +I+ G++ DL +  +L D+Y KC  +  A   F    
Sbjct: 317 VASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTE 376

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             + V +N+++V Y Q  + SES  +F +M++ G+  +  ++   +  C +L A+  G++
Sbjct: 377 TENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQ 436

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+     +++V + ++D Y + G +D A  I   L  +D  SW  +I GY     
Sbjct: 437 IHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDL 496

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ LF+ M   G+  D + + + ++AC+    + +G++   +               
Sbjct: 497 FAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNA 556

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           +V L  R G  +DA    + +  + + + W AL+      G+ E
Sbjct: 557 LVSLYARCGRAQDAYLAFEKIDAKDNIS-WNALISGFAQSGHCE 599



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 142/320 (44%), Gaps = 36/320 (11%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N  T   +   C     L   K++HARI + G + +  L + L D+Y   G ++ A  +F
Sbjct: 9   NVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLF 68

Query: 117 NISFRDEVSY-NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN-LAAI 174
           +      VS+ N +I G       S+ L LFS M    +  D  +F   + AC+   A  
Sbjct: 69  DDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPF 128

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           +  ++IH   I     +   V N ++D Y+++G +DLA  +F+ L +KDS SW  +I G 
Sbjct: 129 QVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGL 188

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG----- 278
              G  D AI LF  M +  V   P  + ++L+AC+           HG +V+ G     
Sbjct: 189 SQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSET 248

Query: 279 ----------KKYFDEMQADSV-----KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
                      ++ + + A+ +     +   + Y  ++  L + G  + A++L + + ++
Sbjct: 249 FVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLD 308

Query: 324 ---PDANIWGALLGACRIYG 340
              PD     +LL AC   G
Sbjct: 309 CMKPDCVTVASLLSACASVG 328



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 57/124 (45%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M   G++ +V +++     C N  ++   K++H    +        + + ++D Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +D A K+FD +P  + + WN +I G          + LF  M  + V  D  ++ ++L A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 269 CSHG 272
           CS G
Sbjct: 121 CSGG 124


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  327 bits (838), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 161/396 (40%), Positives = 247/396 (62%), Gaps = 2/396 (0%)

Query: 20  EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79
           E +I++WN +V  F Q      AL+  + M      PN+ T++  L AC +   L+ GKE
Sbjct: 461 EPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKE 520

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSD 138
           IH  ++R  +     + +AL  MY+ C  L +A +VF+ +S RD V +N +I   +Q+  
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580

Query: 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
              +L L  EM L  ++ + V+ + A+ AC+ LAA++QGKEIH   IR  L T  F+ NS
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNS 640

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
           ++D Y R G I  + +IFD +P +D  SWN +I  YGM G    A+NLF+  R  G+  +
Sbjct: 641 LIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPN 700

Query: 259 PVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLI 317
            +++  +L+ACSH GL+E+G KYF  M+ + ++ P    YACMVDLL RAG   + ++ I
Sbjct: 701 HITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFI 760

Query: 318 KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWD 377
           + +P EP+A +WG+LLGACRI+ N +L  +AA +LF L+PQ  G Y+L++N+Y+ AG+W+
Sbjct: 761 EKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWE 820

Query: 378 EASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +A+K+R LMK R   K PGCSW++ + ++  FVV D
Sbjct: 821 DAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGD 856



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 206/438 (47%), Gaps = 54/438 (12%)

Query: 2   YAKSSRPAEASYLFHNIA-----EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP 56
           YA+S +  EAS  F  +      + N+VSW A++A   QN  + +AL + R+M +    P
Sbjct: 301 YAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKP 360

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           NS+T+ + + AC     LR G+EIH   I+ + L+ DL + N+L D YAKC  + +A+  
Sbjct: 361 NSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRK 420

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF------------- 161
           F  I   D VS+N ++ GY+      E++ L SEM+  G++ D++++             
Sbjct: 421 FGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG 480

Query: 162 ----------------------MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
                                  GA++AC  +  +K GKEIHG  +R H+     V +++
Sbjct: 481 KAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSAL 540

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
           +  Y+    +++A  +F  L  +D   WN++I      G    A++L   M    V  + 
Sbjct: 541 ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNT 600

Query: 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319
           V+ ++ L ACS    + +GK+    +    +         ++D+ GR G ++ + ++   
Sbjct: 601 VTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDL 660

Query: 320 LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM------LKPQHCGYYILLSNMYAEA 373
           +P + D   W  ++    +YG    G  A  +LF       LKP H  +  LLS   + +
Sbjct: 661 MP-QRDLVSWNVMIS---VYGMHGFGMDAV-NLFQXFRTMGLKPNHITFTNLLSAC-SHS 714

Query: 374 GKWDEASKVRELMKSREA 391
           G  +E  K  ++MK+  A
Sbjct: 715 GLIEEGWKYFKMMKTEYA 732



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 134/234 (57%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+       A  +F  ++ +++V WN++++  AQ+   + AL L+REM + N   N+VT
Sbjct: 543 MYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVT 602

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
           + + LPAC++   LR GKEIH  IIR GL+   F+ N+L DMY +CG +  ++ +F++  
Sbjct: 603 MVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP 662

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
            RD VS+N++I  Y       ++++LF   R +G+K + ++F   +SAC++   I++G K
Sbjct: 663 QRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWK 722

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
               +     +   +     ++D  +R+G+ +   +  + +P + ++A W +L+
Sbjct: 723 YFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL 776



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 147/300 (49%), Gaps = 5/300 (1%)

Query: 42  ALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101
           A  L+  M + N         ++L  C + + LR G ++HA+++  G++   FL + L +
Sbjct: 73  AAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLE 132

Query: 102 MYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS 160
           +Y + GC+  A+ +F+ +S R+  S+  ++  Y    D  E++ LF  M   G++ D   
Sbjct: 133 VYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFV 192

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           F     AC+ L   + GK+++   +      +  V  SILD + + GR+D+A + F+ + 
Sbjct: 193 FPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIE 252

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            KD   WN ++ GY   GE   A+     M+  GV  D V++ AI++  +  G  E+  K
Sbjct: 253 FKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASK 312

Query: 281 YFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE---PDANIWGALLGAC 336
           YF EM      KP  + +  ++    + G   +A+ + + + +E   P++    + + AC
Sbjct: 313 YFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 136/294 (46%), Gaps = 32/294 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ K  R   A   F  I  K++  WN MV+ +       KAL+ + +M +    P+ VT
Sbjct: 234 MFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVT 293

Query: 61  LTNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
              ++   A+ G F    K               FL           G  +   NV    
Sbjct: 294 WNAIISGYAQSGQFEEASK--------------YFLEMG--------GLKDFKPNV---- 327

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
               VS+  LI G  Q     E+LS+F +M L G+K + ++   A+SAC NL+ ++ G+E
Sbjct: 328 ----VSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGRE 383

Query: 180 IHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           IHG  I+ + L + L V NS++D+Y +   +++A + F  +   D  SWN ++ GY + G
Sbjct: 384 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRG 443

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
             + AI L   M+  G+  D +++  ++T  +  G  +   ++F  M +  + P
Sbjct: 444 SHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDP 497



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 81/384 (21%), Positives = 163/384 (42%), Gaps = 80/384 (20%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y ++    +A  +F  ++E+N+ SW A++  +       + ++L   M      P+   
Sbjct: 133 VYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFV 192

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
              V  AC+     R GK+++  ++  G   +  +  ++ DM+ KCG +++A+  F  I 
Sbjct: 193 FPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIE 252

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           F+D   +NI++ GY+   +  ++L   S+M+L G+K D V++                  
Sbjct: 253 FKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTW------------------ 294

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF-------DCLPVKDSASWNTLIL 232
                            N+I+  Y +SG+ + A+K F       D  P  +  SW  LI 
Sbjct: 295 -----------------NAIISGYAQSGQFEEASKYFLEMGGLKDFKP--NVVSWTALIA 335

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY------FDEMQ 286
           G    G    A+++F  M  +GV  + ++  + ++AC++  L+  G++        +E+ 
Sbjct: 336 GSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELD 395

Query: 287 AD-------------------------SVKPTEM-HYACMVDLLGRAGLMEDAVKLIKNL 320
           +D                          +K T++  +  M+      G  E+A++L+  +
Sbjct: 396 SDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEM 455

Query: 321 P---VEPDANIWGALLGACRIYGN 341
               +EPD   W  L+     YG+
Sbjct: 456 KFQGIEPDIITWNGLVTGFTQYGD 479



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 108/239 (45%), Gaps = 4/239 (1%)

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
           L S M L      +  +   +  C  L  ++ G ++H   +   +    F+ + +L+ Y 
Sbjct: 76  LLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYC 135

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           ++G ++ A ++FD +  ++  SW  ++  Y  LG+ +  I LF  M  +GV  D   +  
Sbjct: 136 QTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPK 195

Query: 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           +  ACS       GK  +D M +   +        ++D+  + G M+ A +  + +  + 
Sbjct: 196 VFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK- 254

Query: 325 DANIWGALLGACRIYGNVE--LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381
           D  +W  ++      G  +  L   +   L  +KP    +  ++S  YA++G+++EASK
Sbjct: 255 DVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISG-YAQSGQFEEASK 312


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  327 bits (838), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 157/414 (37%), Positives = 248/414 (59%), Gaps = 2/414 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EA  LF  + +++ ++W  MV  F QN LE +AL   R M       +  T  ++L AC 
Sbjct: 224 EARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACG 283

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
               L  GK+IHA IIR   + ++F+ +AL DMY+KC  +  A+  F  +S ++ +S+  
Sbjct: 284 ALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTA 343

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           LIVGY Q     E++ +FSEM+  G+  D  +    IS+CANLA++++G + H + +   
Sbjct: 344 LIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 403

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L  ++ V+N+++  Y + G I+ A+++FD +   D  SW  L+ GY   G     I+LFE
Sbjct: 404 LMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFE 463

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            M    V  D V++I +L+ACS  G VEKG  YF  MQ D  + P + HY CM+DL  R+
Sbjct: 464 KMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRS 523

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           G +++A + IK +P+ PDA  WG LL ACR+ G++E+G WAAE+L  + PQ+   Y+LL 
Sbjct: 524 GRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLC 583

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFTPG 421
           +M+A  G W++ +++R  M+ R+ KK PGCSW++ +++V  F  +D+   F+ G
Sbjct: 584 SMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKG 637



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 147/283 (51%), Gaps = 30/283 (10%)

Query: 1   MYAK--SSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY+K  S +PAE +  F  ++ KNI+SW A++  + QN    +A+++  EM      P+ 
Sbjct: 316 MYSKCRSIKPAETA--FRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDD 373

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            TL +V+ +CA    L  G + H   +  GL   + ++NAL  +Y KCG +  A  +F+ 
Sbjct: 374 FTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDE 433

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           + F D+VS+  L+ GY+Q     E++ LF +M    +K D V+F+G +SAC+    +++G
Sbjct: 434 MLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKG 493

Query: 178 -------KEIHG-VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWN 228
                  ++ HG V I  H          ++D Y+RSGR+  A +    +P+  D+  W 
Sbjct: 494 CSYFHSMQKDHGIVPIDDHY-------TCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWG 546

Query: 229 TLILGYGMLGEVD----TAINLFEAMREDGVGYDPVSYIAILT 267
           TL+    + G+++     A NL E   +     +P SY+ + +
Sbjct: 547 TLLSACRLRGDMEIGQWAAENLLEIDPQ-----NPASYVLLCS 584



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 154/367 (41%), Gaps = 75/367 (20%)

Query: 92  DLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMR 150
           +LF  NAL    A    L+   ++F +++ RD VSYN +I G+S     + ++ L+  + 
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130

Query: 151 LLG--MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
             G  ++   ++    + A + L     G++ H   +R     + FV + ++  Y + G 
Sbjct: 131 RAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGL 190

Query: 209 IDLANKIFD-------------------------------CLPVKDSASWNTLILGYGML 237
           I  A ++FD                                +  +D  +W T++ G+   
Sbjct: 191 IGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQN 250

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK--------YFDE----- 284
           G    A+N F  MR  G+  D  ++ +ILTAC     +E+GK+        ++D+     
Sbjct: 251 GLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVG 310

Query: 285 -------MQADSVKPTE-----------MHYACMVDLLGRAGLMEDAVKLIKNLP---VE 323
                   +  S+KP E           + +  ++   G+ G  E+AV++   +    ++
Sbjct: 311 SALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID 370

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN----MYAEAGKWDEA 379
           PD    G+++ +C    ++E G  A  H   L      +YI +SN    +Y + G  ++A
Sbjct: 371 PDDFTLGSVISSCANLASLEEG--AQFHCLALVSG-LMHYITVSNALVTLYGKCGSIEDA 427

Query: 380 SKVRELM 386
            ++ + M
Sbjct: 428 HRLFDEM 434



 Score = 44.7 bits (104), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 11/127 (8%)

Query: 180 IHGVTIRKHLH---THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           +H V +R   H   THL   N +L  Y ++GR   A ++FD  P  +  ++N L+     
Sbjct: 27  LHCVILRTLPHPPPTHLL--NHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAH 84

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM--QADSVKPTE 294
              +D   +LF +M +     D VSY A++   S GG   +  + +  +     SV+P+ 
Sbjct: 85  ARLLDDMDSLFASMAQR----DTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSR 140

Query: 295 MHYACMV 301
           +  + MV
Sbjct: 141 ITMSAMV 147


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 161/396 (40%), Positives = 247/396 (62%), Gaps = 2/396 (0%)

Query: 20  EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79
           E +I++WN +V  F Q      AL+  + M      PN+ T++  L AC +   L+ GKE
Sbjct: 461 EPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKE 520

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSD 138
           IH  ++R  +     + +AL  MY+ C  L +A +VF+ +S RD V +N +I   +Q+  
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580

Query: 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
              +L L  EM L  ++ + V+ + A+ AC+ LAA++QGKEIH   IR  L T  F+ NS
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNS 640

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
           ++D Y R G I  + +IFD +P +D  SWN +I  YGM G    A+NLF+  R  G+  +
Sbjct: 641 LIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPN 700

Query: 259 PVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLI 317
            +++  +L+ACSH GL+E+G KYF  M+ + ++ P    YACMVDLL RAG   + ++ I
Sbjct: 701 HITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFI 760

Query: 318 KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWD 377
           + +P EP+A +WG+LLGACRI+ N +L  +AA +LF L+PQ  G Y+L++N+Y+ AG+W+
Sbjct: 761 EKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWE 820

Query: 378 EASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +A+K+R LMK R   K PGCSW++ + ++  FVV D
Sbjct: 821 DAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGD 856



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 206/438 (47%), Gaps = 54/438 (12%)

Query: 2   YAKSSRPAEASYLFHNIA-----EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP 56
           YA+S +  EAS  F  +      + N+VSW A++A   QN  + +AL + R+M +    P
Sbjct: 301 YAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKP 360

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           NS+T+ + + AC     LR G+EIH   I+ + L+ DL + N+L D YAKC  + +A+  
Sbjct: 361 NSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRK 420

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF------------- 161
           F  I   D VS+N ++ GY+      E++ L SEM+  G++ D++++             
Sbjct: 421 FGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG 480

Query: 162 ----------------------MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
                                  GA++AC  +  +K GKEIHG  +R H+     V +++
Sbjct: 481 KAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSAL 540

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
           +  Y+    +++A  +F  L  +D   WN++I      G    A++L   M    V  + 
Sbjct: 541 ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNT 600

Query: 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319
           V+ ++ L ACS    + +GK+    +    +         ++D+ GR G ++ + ++   
Sbjct: 601 VTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDL 660

Query: 320 LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM------LKPQHCGYYILLSNMYAEA 373
           +P + D   W  ++    +YG    G   A +LF       LKP H  +  LLS   + +
Sbjct: 661 MP-QRDLVSWNVMIS---VYGMHGFGM-DAVNLFQQFRTMGLKPNHITFTNLLSAC-SHS 714

Query: 374 GKWDEASKVRELMKSREA 391
           G  +E  K  ++MK+  A
Sbjct: 715 GLIEEGWKYFKMMKTEYA 732



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 135/234 (57%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+       A  +F  ++ +++V WN++++  AQ+   + AL L+REM + N   N+VT
Sbjct: 543 MYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVT 602

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
           + + LPAC++   LR GKEIH  IIR GL+   F+ N+L DMY +CG +  ++ +F++  
Sbjct: 603 MVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP 662

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
            RD VS+N++I  Y       ++++LF + R +G+K + ++F   +SAC++   I++G K
Sbjct: 663 QRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWK 722

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
               +     +   +     ++D  +R+G+ +   +  + +P + ++A W +L+
Sbjct: 723 YFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL 776



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 147/300 (49%), Gaps = 5/300 (1%)

Query: 42  ALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101
           A  L+  M + N         ++L  C + + LR G ++HA+++  G++   FL + L +
Sbjct: 73  AAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLE 132

Query: 102 MYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS 160
           +Y + GC+  A+ +F+ +S R+  S+  ++  Y    D  E++ LF  M   G++ D   
Sbjct: 133 VYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFV 192

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           F     AC+ L   + GK+++   +      +  V  SILD + + GR+D+A + F+ + 
Sbjct: 193 FPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIE 252

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            KD   WN ++ GY   GE   A+     M+  GV  D V++ AI++  +  G  E+  K
Sbjct: 253 FKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASK 312

Query: 281 YFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE---PDANIWGALLGAC 336
           YF EM      KP  + +  ++    + G   +A+ + + + +E   P++    + + AC
Sbjct: 313 YFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 136/294 (46%), Gaps = 32/294 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ K  R   A   F  I  K++  WN MV+ +       KAL+ + +M +    P+ VT
Sbjct: 234 MFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVT 293

Query: 61  LTNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
              ++   A+ G F    K               FL           G  +   NV    
Sbjct: 294 WNAIISGYAQSGQFEEASK--------------YFLEMG--------GLKDFKPNV---- 327

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
               VS+  LI G  Q     E+LS+F +M L G+K + ++   A+SAC NL+ ++ G+E
Sbjct: 328 ----VSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGRE 383

Query: 180 IHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           IHG  I+ + L + L V NS++D+Y +   +++A + F  +   D  SWN ++ GY + G
Sbjct: 384 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRG 443

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
             + AI L   M+  G+  D +++  ++T  +  G  +   ++F  M +  + P
Sbjct: 444 SHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDP 497



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 81/384 (21%), Positives = 163/384 (42%), Gaps = 80/384 (20%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y ++    +A  +F  ++E+N+ SW A++  +       + ++L   M      P+   
Sbjct: 133 VYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFV 192

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
              V  AC+     R GK+++  ++  G   +  +  ++ DM+ KCG +++A+  F  I 
Sbjct: 193 FPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIE 252

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           F+D   +NI++ GY+   +  ++L   S+M+L G+K D V++                  
Sbjct: 253 FKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTW------------------ 294

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF-------DCLPVKDSASWNTLIL 232
                            N+I+  Y +SG+ + A+K F       D  P  +  SW  LI 
Sbjct: 295 -----------------NAIISGYAQSGQFEEASKYFLEMGGLKDFKP--NVVSWTALIA 335

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY------FDEMQ 286
           G    G    A+++F  M  +GV  + ++  + ++AC++  L+  G++        +E+ 
Sbjct: 336 GSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELD 395

Query: 287 AD-------------------------SVKPTEM-HYACMVDLLGRAGLMEDAVKLIKNL 320
           +D                          +K T++  +  M+      G  E+A++L+  +
Sbjct: 396 SDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEM 455

Query: 321 P---VEPDANIWGALLGACRIYGN 341
               +EPD   W  L+     YG+
Sbjct: 456 KFQGIEPDIITWNGLVTGFTQYGD 479



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 108/239 (45%), Gaps = 4/239 (1%)

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
           L S M L      +  +   +  C  L  ++ G ++H   +   +    F+ + +L+ Y 
Sbjct: 76  LLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYC 135

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           ++G ++ A ++FD +  ++  SW  ++  Y  LG+ +  I LF  M  +GV  D   +  
Sbjct: 136 QTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPK 195

Query: 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           +  ACS       GK  +D M +   +        ++D+  + G M+ A +  + +  + 
Sbjct: 196 VFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK- 254

Query: 325 DANIWGALLGACRIYGNVE--LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381
           D  +W  ++      G  +  L   +   L  +KP    +  ++S  YA++G+++EASK
Sbjct: 255 DVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISG-YAQSGQFEEASK 312


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 169/415 (40%), Positives = 259/415 (62%), Gaps = 3/415 (0%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MY+K     +A   F  + +K +VSW +++A + +  L   A++L  EM      P+  +
Sbjct: 698  MYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYS 757

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +T+VL ACA G+ L  G+++H  I +  +   L ++NAL DMYAKCG +  A  VF+ I 
Sbjct: 758  MTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIP 817

Query: 120  FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             +D VS+N +I GYS+ S  +E+L LF+EM+    + D ++    + AC +LAA++ G+ 
Sbjct: 818  VKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRG 876

Query: 180  IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            IHG  +R    + L VAN+++D Y + G +  A  +FD +P KD  +W  +I G GM G 
Sbjct: 877  IHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGL 936

Query: 240  VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
             + AI  F+ MR  G+  D +++ +IL ACSH GL+ +G  +F+ M ++ +++P   HYA
Sbjct: 937  GNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYA 996

Query: 299  CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            CMVDLL R G +  A  LI+ +P++PDA IWGALL  CRI+ +VEL    AEH+F L+P 
Sbjct: 997  CMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPD 1056

Query: 359  HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            + GYY+LL+N+YAEA KW+E  K+RE +  R  KK+PGCSW++ + +   FV  D
Sbjct: 1057 NAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSAD 1111



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 164/337 (48%), Gaps = 3/337 (0%)

Query: 1   MYAKSSRPAEASYLF-HNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MY       E   +F H +++  +  WN M++ +A+     +++ L ++M       NS 
Sbjct: 495 MYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSY 554

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T + +L   A    +   K IH  + + G      + N+L   Y K G ++ A  +F+ +
Sbjct: 555 TFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDEL 614

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD VS+N +I G         +L  F +M +L +  D+ + + +++ACAN+ ++  G+
Sbjct: 615 GDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGR 674

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +HG  ++      +   N++LD Y++ G ++ A + F+ +  K   SW +LI  Y   G
Sbjct: 675 ALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREG 734

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             D AI LF  M   GV  D  S  ++L AC+ G  ++KG+   + ++ +++        
Sbjct: 735 LYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSN 794

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            ++D+  + G ME+A  +   +PV+ D   W  ++G 
Sbjct: 795 ALMDMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMIGG 830



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 134/276 (48%), Gaps = 3/276 (1%)

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR 121
           +++L  CA    L+ GK +H+ I   G+  +  L   L  MY  CG L   + +F+    
Sbjct: 455 SSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILS 514

Query: 122 DEVSY--NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           D   +  N+++  Y++  D  ES+ LF +M+ LG+  +  +F   +   A L  + + K 
Sbjct: 515 DNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKR 574

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG   +    ++  V NS++  Y +SG +D A+K+FD L  +D  SWN++I G  M G 
Sbjct: 575 IHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGF 634

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
             +A+  F  M    VG D  + +  + AC++ G +  G+    +          M    
Sbjct: 635 SHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNT 694

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++D+  + G + DA++  + +  +   + W +L+ A
Sbjct: 695 LLDMYSKCGNLNDAIQAFEKMGQKTVVS-WTSLIAA 729



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 35/185 (18%), Positives = 78/185 (42%), Gaps = 2/185 (1%)

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
           D+ ++   +  CA    +++GK +H V     +     +   ++  Y   G +    +IF
Sbjct: 450 DLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIF 509

Query: 217 DCLPVKDSAS-WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275
           D +   +    WN ++  Y  +G+   +I LF+ M++ G+  +  ++  IL   +  G V
Sbjct: 510 DHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRV 569

Query: 276 EKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            + K+    +              ++    ++G ++ A KL   L  + D   W +++  
Sbjct: 570 GECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELG-DRDVVSWNSMISG 628

Query: 336 CRIYG 340
           C + G
Sbjct: 629 CVMNG 633


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 169/415 (40%), Positives = 258/415 (62%), Gaps = 3/415 (0%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MY+K      A+ +F  + +  IVSW + +A + +  L   A+ L  EM      P+  T
Sbjct: 615  MYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYT 674

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +T+++ ACA    L  G+++H+ +I+ G+  +L +TNAL +MYAKCG +  A+ VF+ I 
Sbjct: 675  VTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIP 734

Query: 120  FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             +D VS+N +I GYSQ S  +E+L LF +M+    K D ++    + ACA LAA+ +G+E
Sbjct: 735  VKDIVSWNTMIGGYSQNSLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGRE 793

Query: 180  IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            IHG  +R+   + L VA +++D Y + G + LA  +FD +P KD  SW  +I GYGM G 
Sbjct: 794  IHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGF 853

Query: 240  VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
             + AI+ F  MR  G+  D  S+  IL ACSH GL+ +G K+F+ M+ +  V+P   HYA
Sbjct: 854  GNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYA 913

Query: 299  CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            C+VDLL R G +  A K I+++P++PD  IWG LL  CRI+ +V+L    AEH+F L+P 
Sbjct: 914  CVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPD 973

Query: 359  HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            +  YY++L+N+YAEA KW+E  K+R+ M+ R  K+NPGCSW++   +   FV  +
Sbjct: 974  NTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGN 1028



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 157/336 (46%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY       +   +F  I    +  WN +++ +A+     +++ L ++M       N  T
Sbjct: 413 MYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYT 472

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T VL   A    ++  K +H  +++ G   +  + N+L   Y K G +  A N+F+ +S
Sbjct: 473 FTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS 532

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VS+N +I G          L +F +M +LG++ D+ + +  + A AN+  +  G+ 
Sbjct: 533 EPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRA 592

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  ++      +  +N++LD Y++ G ++ A ++F  +      SW + I  Y   G 
Sbjct: 593 LHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGL 652

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              AI LF+ M+  GV  D  +  +I+ AC+    ++KG+     +  + +         
Sbjct: 653 YSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNA 712

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++++  + G +E+A  +   +PV+ D   W  ++G 
Sbjct: 713 LINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMIGG 747



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 176/406 (43%), Gaps = 42/406 (10%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL 74
           F N       + NA +  F +      A++L+ +   +    NS    +VL  CA    L
Sbjct: 328 FTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNS--YCSVLQLCAEKKSL 385

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILIVGY 133
             GK +H+ II  G++ D  L   L  MY  CG L   + +F+    D+V  +N+L+  Y
Sbjct: 386 EDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEY 445

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           ++  +  ES+SLF +M+ LG+  +  +F   +   A L  +K+ K +HG  ++    ++ 
Sbjct: 446 AKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNT 505

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
            V NS++  Y + G ++ A+ +FD L   D  SWN++I G  + G     + +F  M   
Sbjct: 506 AVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLIL 565

Query: 254 GVGYDPVSYIAILTACSHGGLVEKG--------KKYFDEMQADSVKPTEMHYAC------ 299
           GV  D  + +++L A ++ G +  G        K  F E    S    +M+  C      
Sbjct: 566 GVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGA 625

Query: 300 -----------------MVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIY 339
                             +    R GL  DA+ L   +    V PD     +++ AC   
Sbjct: 626 TEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACS 685

Query: 340 GNVELGAWAAEHLFMLK---PQHCGYYILLSNMYAEAGKWDEASKV 382
            +++ G     H +++K     +      L NMYA+ G  +EA  V
Sbjct: 686 SSLDKGRDV--HSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLV 729


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 163/414 (39%), Positives = 250/414 (60%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  +  K++V+W A++A F+QN     AL L  +M      PN  T
Sbjct: 132 MYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFT 191

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L+++L A    H L PG ++HA  ++ G    +++ +AL DMYA+CG ++ AQ  F+ + 
Sbjct: 192 LSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMP 251

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            + EVS+N LI G+++  +   +L L  +M+    +    ++    SACA++ A++QGK 
Sbjct: 252 TKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKW 311

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+  L    F+ N++LD Y ++G ID A ++FD L   D  SWNT++ G    G 
Sbjct: 312 VHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGL 371

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
               ++ FE M   G+  + +S++ +LTACSH GL+++G  YF+ M+   V+P   HY  
Sbjct: 372 GKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVT 431

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
            VDLLGR GL++ A + I+ +P+EP A +WGALLGACR++ N+ELG +AAE  F L P  
Sbjct: 432 FVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHD 491

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G  +LLSN+YA AG+W + +KVR++MK    KK P CSWV+  + V  FV ND
Sbjct: 492 SGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVAND 545



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 156/303 (51%), Gaps = 6/303 (1%)

Query: 40  LKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNA 98
           L AL L++   +    P+    + +L  C R   +  G+ +HA ++    L+  L L N 
Sbjct: 72  LYALDLIQRGSL---VPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNI 128

Query: 99  LTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157
           + +MYAKCGCL+ A+ +F+ +  +D V++  LI G+SQ +   ++L LF +M  LG++ +
Sbjct: 129 IVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPN 188

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
             +    + A  +   +  G ++H   ++    + ++V ++++D Y R G +D A   FD
Sbjct: 189 HFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFD 248

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            +P K   SWN LI G+   GE + A++L   M+         +Y ++ +AC+  G +E+
Sbjct: 249 GMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQ 308

Query: 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
           GK     M    +K        ++D+  +AG ++DA ++   L V+PD   W  +L  C 
Sbjct: 309 GKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCA 367

Query: 338 IYG 340
            +G
Sbjct: 368 QHG 370



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 105/258 (40%), Gaps = 44/258 (17%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
           +  C  L  ++QG+ +H   +  H L  HL + N I++ Y + G +D A ++FD +P KD
Sbjct: 94  LKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKD 153

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGV---------------------------- 255
             +W  LI G+        A+ LF  M   G+                            
Sbjct: 154 MVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHA 213

Query: 256 -----GYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
                GY    Y+  A++   +  G ++  +  FD M   S    E+ +  ++    R G
Sbjct: 214 FCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKS----EVSWNALISGHARKG 269

Query: 309 LMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY-I 364
             E A+ L+  +     +P    + ++  AC   G +E G W   H+     +   +   
Sbjct: 270 EGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGN 329

Query: 365 LLSNMYAEAGKWDEASKV 382
            L +MYA+AG  D+A +V
Sbjct: 330 TLLDMYAKAGSIDDAKRV 347


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 169/415 (40%), Positives = 259/415 (62%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A+ +F  + +  IVSW +++A + +  L   A+ L  EM      P+  T
Sbjct: 340 MYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYT 399

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T+++ ACA    L  G+++H+ +I+ G+  +L +TNAL +MYAKCG +  A+ VF+ I 
Sbjct: 400 VTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIP 459

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+N +I GYSQ    +E+L LF +M+    K D ++    + ACA LAA+ +G+E
Sbjct: 460 VKDIVSWNTMIGGYSQNLLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGRE 518

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R+   + L VA +++D Y + G + LA  +FD +P KD  SW  +I GYGM G 
Sbjct: 519 IHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGF 578

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + AI+ F  MR  G+  D  S+ AIL ACSH GL+ +G K+F+ M+ +  V+P   HYA
Sbjct: 579 GNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYA 638

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLL R G +  A K I+++P++PD  IWG LL  CRI+ +V+L    AEH+F L+P 
Sbjct: 639 CVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPD 698

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +  YY++L+N+YAEA KW+E  K+R+ M+ R  K+NPGCSW++   +   FV  +
Sbjct: 699 NTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGN 753



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 159/336 (47%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY       +   +F  I    +  WN +++ +A+     +++ L ++M       N  T
Sbjct: 138 MYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYT 197

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T VL   A    ++  K +H  +++ G   +  + N+L   Y K G +  A N+F+ +S
Sbjct: 198 FTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS 257

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VS+N +I G          L +F +M +LG++ D+ + +  + ACAN+  +  G+ 
Sbjct: 258 EPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRA 317

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  ++      +  +N++LD Y++ G ++ A ++F  +      SW ++I  Y   G 
Sbjct: 318 LHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGL 377

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              AI LF+ M+  GV  D  +  +I+ AC+    ++KG+     +  + +         
Sbjct: 378 YSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNA 437

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++++  + G +E+A  +   +PV+ D   W  ++G 
Sbjct: 438 LINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMIGG 472



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 178/406 (43%), Gaps = 42/406 (10%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL 74
           F N       + NA +  F +      A++L+ +   +    NS    +VL  CA    L
Sbjct: 53  FTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNS--YCSVLQLCAEKKSL 110

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILIVGY 133
             GK +H+ II  G++ D  L   L  MY  CG L   + +F+    D+V  +N+L+  Y
Sbjct: 111 EDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEY 170

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           ++  +  ES+SLF +M+ LG+  +  +F   +   A L  +K+ K +HG  ++    ++ 
Sbjct: 171 AKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNT 230

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
            V NS++  Y + G ++ A+ +FD L   D  SWN++I G  + G     + +F  M   
Sbjct: 231 AVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLIL 290

Query: 254 GVGYDPVSYIAILTACSHGGLVEKG--------KKYFDEMQADSVKPTEMHYAC------ 299
           GV  D  + +++L AC++ G +  G        K  F E    S    +M+  C      
Sbjct: 291 GVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGA 350

Query: 300 -----------------MVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIY 339
                            ++    R GL  DA+ L   +    V PD     +++ AC   
Sbjct: 351 TEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACS 410

Query: 340 GNVELGAWAAEHLFMLK---PQHCGYYILLSNMYAEAGKWDEASKV 382
            +++ G     H +++K     +      L NMYA+ G  +EA  V
Sbjct: 411 SSLDKGRDV--HSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLV 454


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 163/414 (39%), Positives = 251/414 (60%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  +  K++V+W A++A F+QN     AL L  +M      PN  T
Sbjct: 132 MYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFT 191

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L+++L A    H L PG ++HA  ++ G    +++ +AL DMYA+CG ++ AQ  F+ + 
Sbjct: 192 LSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMP 251

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            + EVS+N LI G+++  +   +L L  +M+    +    ++   +SACA++ A++QGK 
Sbjct: 252 TKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKW 311

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+  L    F+ N++LD Y ++G ID A ++FD L   D  SWNT++ G    G 
Sbjct: 312 VHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGL 371

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
               ++ FE M   G+  + +S++ +LTACSH GL+++G  YF+ M+   V+P   HY  
Sbjct: 372 GKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVT 431

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
            VDLLGR GL++ A + I+ +P+EP A +WGALLGACR++ N+ELG +AAE  F L P  
Sbjct: 432 FVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHD 491

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G  +LLSN+YA AG+W + +KVR++MK    KK P CSWV+  + V  FV ND
Sbjct: 492 SGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVAND 545



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 156/303 (51%), Gaps = 6/303 (1%)

Query: 40  LKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNA 98
           L AL L++   +    P+    + +L  C R   +  G+ +HA ++    L+  L L N 
Sbjct: 72  LYALDLIQRGSL---VPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNI 128

Query: 99  LTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157
           + +MYAKCGCL+ A+ +F+ +  +D V++  LI G+SQ +   ++L LF +M  LG + +
Sbjct: 129 IVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPN 188

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
             +    + A  +   +  G ++H   ++    + ++V ++++D Y R G +D A   FD
Sbjct: 189 HFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFD 248

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            +P K   SWN LI G+   GE + A++L   M+         +Y ++L+AC+  G +E+
Sbjct: 249 GMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQ 308

Query: 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
           GK     M    +K        ++D+  +AG ++DA ++   L V+PD   W  +L  C 
Sbjct: 309 GKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCA 367

Query: 338 IYG 340
            +G
Sbjct: 368 QHG 370



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 107/258 (41%), Gaps = 44/258 (17%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
           +  C  L  ++QG+ +H   +  H L  HL + N I++ Y + G +D A ++FD +P KD
Sbjct: 94  LKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKD 153

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAM--------------------REDGV-------- 255
             +W  LI G+        A+ LF  M                     E G+        
Sbjct: 154 MVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHA 213

Query: 256 -----GYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
                GY    Y+  A++   +  G ++  +  FD M   S    E+ +  ++    R G
Sbjct: 214 FCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKS----EVSWNALISGHARKG 269

Query: 309 LMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY-I 364
             E A+ L+  +     +P    + ++L AC   G +E G W   H+     +   +   
Sbjct: 270 EGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGN 329

Query: 365 LLSNMYAEAGKWDEASKV 382
            L +MYA+AG  D+A +V
Sbjct: 330 TLLDMYAKAGSIDDAKRV 347


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/416 (39%), Positives = 248/416 (59%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     EA  +F ++  K+ VSWNA++A   QN    + L L   M      P+  T
Sbjct: 416 MYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYT 475

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +V+ ACA    L  G E+H R+I+ G+  D F+ +A+ DMY KCG L  A+ +   + 
Sbjct: 476 FGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLE 535

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS+N +I G+S       +LS FS M  +G+  D  ++   +  CANLA ++ GK+
Sbjct: 536 ERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQ 595

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  ++  LH+ +++A++I+D Y++ G +  +  +F+  P +D  +W+ +I  Y   G 
Sbjct: 596 IHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGL 655

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + AI LFE M+   V  +   +I++L AC+H G V+KG  YF EM++   + P   HY+
Sbjct: 656 GEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYS 715

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGR+G + +A++LI+++P E D  IW  LLG CR+ GNVE+   AA  L  L PQ
Sbjct: 716 CMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQ 775

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y+LLSN+YA AG W E +K+R  MK+ + KK PGCSW+Q RDEV  F+V D+
Sbjct: 776 DSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVHAFLVGDK 831



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 166/339 (48%), Gaps = 10/339 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A +LF ++ E+++VSWN+M++ + QN    K++++  +M +     +  T 
Sbjct: 114 YAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATF 173

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
             VL AC        G ++H   I+ G + D+    AL DMY+ C  L+ A N+F  +  
Sbjct: 174 AVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPE 233

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ V ++ +I GY +    +E L L+  M   GM     +F  A  +CA L+A + G ++
Sbjct: 234 RNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQL 293

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++ +      V  + LD Y +  R+  A K+F+  P     S N LI+GY    +V
Sbjct: 294 HAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQV 353

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC- 299
             A+ +F ++++  + +D +S    LTACS      KG     ++   +VK       C 
Sbjct: 354 LEALEIFRSLQKSYLDFDEISLSGALTACS----AIKGYLEGIQLHGLAVKCGLDFNICV 409

Query: 300 ---MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
              ++D+  + G + +A  +  ++ ++ DA  W A++ A
Sbjct: 410 ANTILDMYAKCGALMEACLIFDDMEIK-DAVSWNAIIAA 447



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 105/429 (24%), Positives = 195/429 (45%), Gaps = 42/429 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+   +   A  +F  + E+N V W+A++A + +N    + L+L + M       +  T
Sbjct: 214 MYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQAT 273

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             +   +CA       G ++HA  ++    +D  +  A  DMYAKC  +  A+ VFN +F
Sbjct: 274 FASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFN-TF 332

Query: 121 RDEV--SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            +    S+N LIVGY++     E+L +F  ++   +  D +S  GA++AC+ +    +G 
Sbjct: 333 PNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGI 392

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++HG+ ++  L  ++ VAN+ILD Y + G +  A  IFD + +KD+ SWN +I  +    
Sbjct: 393 QLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNE 452

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
            V+  + LF +M    +  D  ++ +++ AC+    +  G +    +    +       +
Sbjct: 453 HVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGS 512

Query: 299 CMVDLLGRAGLMEDAVKLIKNLP----------------------------------VEP 324
            ++D+  + G++ +A K+ + L                                   V P
Sbjct: 513 AIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIP 572

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ-HCGYYI--LLSNMYAEAGKWDEASK 381
           D   +  +L  C     VELG     H  +LK Q H   YI   + +MY++ G   ++  
Sbjct: 573 DNFTYATVLDICANLATVELGKQI--HGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRI 630

Query: 382 VRELMKSRE 390
           + E    R+
Sbjct: 631 MFEKAPKRD 639



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 136/300 (45%), Gaps = 42/300 (14%)

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           +T +++   C+    + PGK+ HA+I   G    +F++N L   Y KC  LN A NVF+ 
Sbjct: 39  LTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDK 98

Query: 118 ISFRDEVSYNILIVGYS-------------------------------QTSDCSESLSLF 146
           +  RD +S+N +I GY+                               Q     +S+ +F
Sbjct: 99  MPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIF 158

Query: 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
           ++MRLL ++HD  +F   + AC  +     G ++H + I+    + +    +++D Y+  
Sbjct: 159 TKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTC 218

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
            ++D A  IF  +P ++S  W+ +I GY         + L++ M ++G+G    ++ +  
Sbjct: 219 KKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAF 278

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV-----DLLGRAGLMEDAVKLIKNLP 321
            +C+     E G     ++ A ++K T   Y  +V     D+  +   M DA K+    P
Sbjct: 279 RSCAGLSAFELGT----QLHAYALK-TNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFP 333


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 167/415 (40%), Positives = 246/415 (59%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A  +F      +IV   A+++ +  N L   AL++ R +      PN+VT
Sbjct: 218 IYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVT 277

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +VLPACA    L  GKE+HA I++ GL+    + +A+ DMYAKCG L+LA  +F  + 
Sbjct: 278 LASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMP 337

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V +N +I   SQ     E++ LF +M   G+ +D VS   A+SACANL A+  GK 
Sbjct: 338 EKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKA 397

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+    + +F  ++++D Y + G + +A  +FD +  K+  SWN++I  YG  G 
Sbjct: 398 IHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGH 457

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HYA 298
           ++ ++ LF  M EDG+  D V+++ IL+AC H G V+KG +YF  M  +   P  M HYA
Sbjct: 458 LEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYA 517

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDL GRAG + +A + IKN+P  PD  +WG LLGACR++GNVEL   A+  L  L P+
Sbjct: 518 CIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPE 577

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + G Y+LLSN++A+AG+W    K+R LMK R  +K PG SW++       FV  D
Sbjct: 578 NSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVNKTTHMFVAAD 632



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 198/383 (51%), Gaps = 7/383 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  + ++A  LF+ + + N+V+WN M+A F QN    +A  L  EM      P+S+T
Sbjct: 117 MYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSIT 176

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             + LP+      L+ GKEIH  I+R G+  D+FL +AL D+Y KC  + +A  +F  S 
Sbjct: 177 FASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQST 236

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V    +I GY      +++L +F  +    M  + V+    + ACA LA +  GKE
Sbjct: 237 NVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKE 296

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++  L     V ++I+D Y + GR+DLA +IF  +P KD+  WN +I      G+
Sbjct: 297 LHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGK 356

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              AI+LF  M  +G+ YD VS  A L+AC++   +  GK     M   +        + 
Sbjct: 357 PQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESA 416

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM---LK 356
           ++D+ G+ G +  A + + ++  E +   W +++ A   +G++E+ + A  H  +   ++
Sbjct: 417 LIDMYGKCGNLSVA-RCVFDMMREKNEVSWNSIIAAYGSHGHLEV-SLALFHKMLEDGIQ 474

Query: 357 PQHCGYYILLSNMYAEAGKWDEA 379
           P H  +  +LS     AG+ D+ 
Sbjct: 475 PDHVTFLTILSAC-GHAGQVDKG 496



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 171/341 (50%), Gaps = 2/341 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YA++    +A  LF  +  K+ V WN M+  F +      A+++  +M      PNS+T
Sbjct: 16  LYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTKPNSIT 75

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL  CA       G ++H  +I  G +FD  + NAL  MY+K G L+ A  +FN + 
Sbjct: 76  FASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMP 135

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             + V++N +I G+ Q     E+  LFSEM   G+  D ++F   + +    A++KQGKE
Sbjct: 136 DTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKE 195

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R  +   +F+ ++++D Y +   + +A KIF      D      +I GY + G 
Sbjct: 196 IHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGL 255

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ +F  + E+ +  + V+  ++L AC+    +  GK+    +    +       + 
Sbjct: 256 NNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSA 315

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           ++D+  + G ++ A ++ + +P E DA  W A++  C   G
Sbjct: 316 IMDMYAKCGRLDLAYQIFRRMP-EKDAVCWNAIITNCSQNG 355



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 166/342 (48%), Gaps = 40/342 (11%)

Query: 88  GLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLF 146
           G N D F+ ++L  +YA+ GC+  A+ +F+ +  +D V +N+++ G+ +  + + ++ +F
Sbjct: 2   GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVF 61

Query: 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
            +MR    K + ++F   +S CA+ A  + G ++HG+ I    H    VAN+++  Y++ 
Sbjct: 62  EDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKF 121

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           G++  A K+F+ +P  +  +WN +I G+   G +D A  LF  M   GV  D +++ + L
Sbjct: 122 GQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFL 181

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL------LGRA------------- 307
            + +    +++GK+    +    +       + ++D+      +G A             
Sbjct: 182 PSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIV 241

Query: 308 ------------GLMEDAVKLIKNLPVE---PDANIWGALLGACRIYGNVELGAWAAEHL 352
                       GL  DA+++ + L  E   P+A    ++L AC     + LG     ++
Sbjct: 242 VCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANI 301

Query: 353 F---MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
               + + +H G  I+  +MYA+ G+ D A ++   M  ++A
Sbjct: 302 LKHGLDERRHVGSAIM--DMYAKCGRLDLAYQIFRRMPEKDA 341


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 170/454 (37%), Positives = 265/454 (58%), Gaps = 40/454 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  RP +A  +F  + E+N+VSWN+++  + QN    +AL L  EM      P+ VT
Sbjct: 195 MYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVT 254

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCG------CL---- 109
           L++V+ ACA     R G+++HA +++   L  D+ L NAL DMYAKCG      C+    
Sbjct: 255 LSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSM 314

Query: 110 ---------------------NLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
                                  AQ VF+ +  ++ +++N+LI  Y+Q  +  E++ LF 
Sbjct: 315 PSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFV 374

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH------THLFVANSILD 201
           +++   +     ++   ++AC N+A ++ G++ H   +++         + +FV NS++D
Sbjct: 375 QLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVD 434

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y ++G ID   K+F+ +  +D+ SWN +I+GY   G    A++LFE M       D V+
Sbjct: 435 MYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVT 494

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
            I +L+AC H GLV++G++YF  M  D  + P+  HY CMVDLLGRAG +++A +LI ++
Sbjct: 495 MIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDM 554

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
           P+EPD+ +W +LLGACR++ NVELG W A  LF L PQ+ G Y+LLSNMYAE GKW E  
Sbjct: 555 PMEPDSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVF 614

Query: 381 KVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +VR  MK R   K PGCSW++   ++  F+  D+
Sbjct: 615 RVRRSMKDRGVSKQPGCSWIEIGRKMNVFLARDK 648



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 189/400 (47%), Gaps = 47/400 (11%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRL--ELKALQLVREMPIHNEFPNSV 59
           YA+  RP EA  LF  I + +  S+NA+VA  A++       AL+ +  M   +   N+ 
Sbjct: 93  YARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAY 152

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           +  + L ACA     R G+++H  + R     D+ + +AL DMYAKC     A+ VF+ +
Sbjct: 153 SFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAM 212

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ VS+N LI  Y Q     E+L LF EM   G   D V+    +SACA LAA ++G+
Sbjct: 213 PERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGR 272

Query: 179 EIHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           ++H   ++   L   + + N+++D Y + GR   A  IFD +P +   S  +++ GY   
Sbjct: 273 QVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKS 332

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
             V+ A  +F  M E  V    +++  ++ A +  G  E+  + F +++ DS+ PT  HY
Sbjct: 333 ANVEDAQVVFSQMVEKNV----IAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPT--HY 386

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL----- 352
                                          +G +L AC    +++LG  A  H+     
Sbjct: 387 ------------------------------TYGNVLNACGNIADLQLGQQAHVHVLKEGF 416

Query: 353 -FMLKPQHCGYY-ILLSNMYAEAGKWDEASKVRELMKSRE 390
            F   P+   +    L +MY + G  D+ +KV E M +R+
Sbjct: 417 RFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARD 456



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 158/346 (45%), Gaps = 43/346 (12%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           L   +  HARI++  +  + FL N L   YA+ G L  A+ VF+ I  R+  SYN L+  
Sbjct: 33  LSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSA 92

Query: 133 YSQTSDCSESLSLF---------------------------SEMRLLGMKH------DVV 159
           Y++     E+ +LF                             +R L   H      +  
Sbjct: 93  YARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAY 152

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           SF  A+SACA     + G+++HG+  R      + + ++++D Y +  R + A ++FD +
Sbjct: 153 SFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAM 212

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
           P ++  SWN+LI  Y   G V  A+ LF  M   G   D V+  ++++AC+      +G+
Sbjct: 213 PERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGR 272

Query: 280 KYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
           +    M + D ++   +    +VD+  + G   +A  +  ++P     +    L G  + 
Sbjct: 273 QVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAK- 331

Query: 339 YGNVELGAWAAEHLF--MLKPQHCGYYILLSNMYAEAGKWDEASKV 382
             NVE     A+ +F  M++     + +L++  YA+ G+ +EA ++
Sbjct: 332 SANVE----DAQVVFSQMVEKNVIAWNVLIA-AYAQNGEEEEAIRL 372



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 17/189 (8%)

Query: 156 HDVVSFMGAISACANL----AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211
            ++V+ + A S  A+L      +   +  H   ++  +    F+ N+++  Y R GR+  
Sbjct: 11  QELVAHLRASSPLADLLRSAPNLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRD 70

Query: 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS- 270
           A ++FD +P++++ S+N L+  Y  LG  D A  LFEA+ +     D  SY A++ A + 
Sbjct: 71  ARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDP----DQCSYNAVVAALAR 126

Query: 271 HG-GLVEKGKKYFDEMQADSVKPTEMHY-----ACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           HG G      ++   M AD        +     AC  +   R G  E    L+   P   
Sbjct: 127 HGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTG--EQVHGLVARSPHAD 184

Query: 325 DANIWGALL 333
           D +I  AL+
Sbjct: 185 DVHIRSALV 193


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 165/451 (36%), Positives = 256/451 (56%), Gaps = 37/451 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  +  ++++SW +M + +    L  +AL   R+M ++ E PNSVT
Sbjct: 122 MYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVT 181

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++++LPAC     L+ G+E+H  ++R G+  ++F+++AL +MYA C  +  AQ VF+ +S
Sbjct: 182 VSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMS 241

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLF--------------------------------- 146
            RD VS+N+LI  Y    +C + LS+F                                 
Sbjct: 242 RRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALE 301

Query: 147 --SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
             S M+  G K + ++    + AC NL +++ GK+IHG   R      L    +++  Y 
Sbjct: 302 VLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYA 361

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           + G ++L+ ++F  +  +D+ SWNT+I+   M G  + A+ LF  M + GV  + V++  
Sbjct: 362 KCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTG 421

Query: 265 ILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
           +L+ CSH  LV++G   FD M  D SV+P   H++CMVD+L RAG +E+A + IK +P+E
Sbjct: 422 VLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIE 481

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVR 383
           P A  WGALLG CR+Y NVELG  AA  LF ++  + G Y+LLSN+   A  W EAS+ R
Sbjct: 482 PTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETR 541

Query: 384 ELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +LM+ R   KNPGCSW+Q R+ V  FVV D+
Sbjct: 542 KLMRDRGVTKNPGCSWIQVRNRVHTFVVGDK 572



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 150/297 (50%), Gaps = 2/297 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +Y+ S     A +LF  I + ++ +W  +++   ++   L+A+Q   +    N   P+ +
Sbjct: 20  VYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKL 79

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
            L +V  ACA    +   K +H   IR G   D+ L NAL DMY KC C   A+ VF  +
Sbjct: 80  LLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGM 139

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            FRD +S+  +   Y       E+L  F +M L G + + V+    + AC +L  +K G+
Sbjct: 140 PFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGR 199

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+HG  +R  +  ++FV++++++ Y     I  A  +FD +  +D+ SWN LI  Y +  
Sbjct: 200 EVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNK 259

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
           E +  +++F  M  +GVG +  S+ A++  C   G  EK  +    MQ    KP ++
Sbjct: 260 ECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQI 316


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 151/418 (36%), Positives = 252/418 (60%), Gaps = 2/418 (0%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           +  R  ++  LF  + E++ +SW +M+  F QN L+  A+ + REM + N   +  T  +
Sbjct: 221 RCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGS 280

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           VL AC     L+ GK++HA IIR     ++F+ +AL DMY KC  +  A+ VF  ++ ++
Sbjct: 281 VLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKN 340

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            VS+  ++VGY Q     E++  FS+M+  G++ D  +    IS+CANLA++++G + H 
Sbjct: 341 VVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHA 400

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             +   L + + V+N+++  Y + G I+ ++++F+ +  KD  +W  L+ GY   G+ + 
Sbjct: 401 RALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANE 460

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMV 301
            I LFE+M   G+  D V++I +L+ACS  GLVEKG + F+ M     + P + HY CM+
Sbjct: 461 TIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMI 520

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361
           DL  RAG +E+A   I  +P  PDA  W  LL +CR YGN+++G WAAE L  L P +  
Sbjct: 521 DLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTA 580

Query: 362 YYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
            Y+LLS++YA  GKW+E +++R+ M+ +  +K PGCSW++ +++V  F  +D+   F+
Sbjct: 581 SYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFS 638



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 207/422 (49%), Gaps = 40/422 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP---NS 58
           Y+K  R +E  YLF  +  ++ VSWN++++ +A   L  ++++    M + N+     N 
Sbjct: 85  YSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLM-LKNDGSFNLNR 143

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           +T + +L   ++   ++ G++IH  +++ G    +F+ + L DMY+K G ++ A+ VF+ 
Sbjct: 144 ITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDE 203

Query: 118 -------------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLF 146
                                          +  RD +S+  +I G++Q     +++ +F
Sbjct: 204 LPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIF 263

Query: 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
            EM+L  ++ D  +F   ++AC  + A+++GK++H   IR     ++FVA++++D Y + 
Sbjct: 264 REMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKC 323

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
             I  A  +F  +  K+  SW  +++GYG  G  + A+  F  M++ G+  D  +  +++
Sbjct: 324 KNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVI 383

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
           ++C++   +E+G ++        +         +V L G+ G +ED+ +L   +  + D 
Sbjct: 384 SSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFK-DE 442

Query: 327 NIWGALLGACRIYG--NVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
             W AL+     +G  N  +G + +     LKP    +  +LS   + AG  ++ +++ E
Sbjct: 443 VTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSAC-SRAGLVEKGNQIFE 501

Query: 385 LM 386
            M
Sbjct: 502 SM 503



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 133/247 (53%), Gaps = 9/247 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  +  KN+VSW AM+  + QN    +A++   +M  +   P+  T
Sbjct: 319 MYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFT 378

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+ +CA    L  G + HAR +  GL   + ++NAL  +Y KCG +  +  +FN IS
Sbjct: 379 LGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEIS 438

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           F+DEV++  L+ GY+Q    +E++ LF  M   G+K D V+F+G +SAC+    +++G +
Sbjct: 439 FKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQ 498

Query: 180 IHGVTIRKH----LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGY 234
           I    I +H    +  H      ++D ++R+GRI+ A    + +P   D+ SW TL+   
Sbjct: 499 IFESMINEHGIVPIQDHY---TCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSC 555

Query: 235 GMLGEVD 241
              G +D
Sbjct: 556 RFYGNMD 562



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 125/280 (44%), Gaps = 46/280 (16%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN------ 117
           +L  C   H     K +H+ II+     + FL N L   YAK G +  A  VF+      
Sbjct: 15  LLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPN 74

Query: 118 --------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL 151
                                     +  RD VS+N LI GY+      +S+  ++ M  
Sbjct: 75  LYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLM-- 132

Query: 152 LGMKHD------VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
             +K+D       ++F   +   +    +K G++IHG  ++    +++FV + ++D Y++
Sbjct: 133 --LKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSK 190

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
            G I  A K+FD LP K+   +NTLI+G    G V+ +  LF  MRE     D +S+ ++
Sbjct: 191 MGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRER----DSISWTSM 246

Query: 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           +T  +  GL       F EM+ ++++  +  +  ++   G
Sbjct: 247 ITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACG 286



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 51/218 (23%)

Query: 172 AAIKQGKEIHGVTIRKHLHTHL---------FVANSILDFYTRSGRIDLANKIFDCLPVK 222
           A +K   E H  T  K+LH+H+         F+ N+++  Y + G I  A K+FD +P  
Sbjct: 14  ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHP 73

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAM-REDGVGYDP---------------------- 259
           +  SWNT++  Y  LG V     LF+AM R DGV ++                       
Sbjct: 74  NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLML 133

Query: 260 ----------VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY----ACMVDLLG 305
                     +++  +L   S  G V+ G+    ++    VK   M Y    + +VD+  
Sbjct: 134 KNDGSFNLNRITFSTLLILASKRGCVKLGR----QIHGHVVKFGFMSYVFVGSPLVDMYS 189

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           + G++  A K+   LP E +  ++  L+      G VE
Sbjct: 190 KMGMISCARKVFDELP-EKNVVMYNTLIMGLMRCGRVE 226


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  324 bits (831), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 156/412 (37%), Positives = 249/412 (60%), Gaps = 2/412 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +A  LF  + +++ ++W  MV    QN L+L+AL + R M       +  T  ++L AC 
Sbjct: 230 DAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACG 289

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
                  GK+IHA I R     ++F+ +AL DMY+KC  + LA+ VF  ++ R+ +S+  
Sbjct: 290 ALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTA 349

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +IVGY Q +   E++  FSEM++ G+K D  +    IS+CANLA++++G + H + +   
Sbjct: 350 MIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L  ++ V+N+++  Y + G I+ A+++FD +   D  SW  L+ GY   G+    I+LFE
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFE 469

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            M  +G+  D V++I +L+ACS  GLVEKG  YFD MQ D  + P + HY CM+DL  R+
Sbjct: 470 KMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRS 529

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           G  ++A + IK +P  PDA  W  LL +CR+ GN+E+G WAAE+L    PQ+   Y+LL 
Sbjct: 530 GRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLC 589

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
           +M+A  G+W E + +R  M+ R+ KK PGCSW++ +++V  F  +D+   F+
Sbjct: 590 SMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFS 641



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 140/277 (50%), Gaps = 18/277 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  +  +NI+SW AM+  + QN    +A++   EM +    P+  T
Sbjct: 322 MYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFT 381

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+ +CA    L  G + H   +  GL   + ++NAL  +Y KCG +  A  +F+ +S
Sbjct: 382 LGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMS 441

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           F D+VS+  L+ GY+Q     E++ LF +M + G+K D V+F+G +SAC+    +++G +
Sbjct: 442 FHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCD 501

Query: 180 IHGVTIRKH----LHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLILGY 234
                 + H    +  H      ++D Y+RSGR   A +    +P   D+  W TL+   
Sbjct: 502 YFDSMQKDHDIVPIDDHY---TCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSC 558

Query: 235 GMLGEVD----TAINLFEAMREDGVGYDPVSYIAILT 267
            + G ++     A NL E   +     +P SY+ + +
Sbjct: 559 RLRGNMEIGKWAAENLLETDPQ-----NPASYVLLCS 590



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 164/402 (40%), Gaps = 78/402 (19%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P +  L ++L A A+   L   +    R+  +  + +LF  NAL    A    +   + +
Sbjct: 46  PPTFLLNHLLTAYAKSGRLARAR----RVFDEMPDPNLFTRNALLSALAHSRLVPDMERL 101

Query: 116 F-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAA 173
           F ++  RD VSYN LI G+S T   + S+ L+  + R   ++   ++    I   + L+ 
Sbjct: 102 FASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSD 161

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK----------- 222
              G  +H   +R     + FV + ++D Y + G I  A ++F  +  K           
Sbjct: 162 RALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITG 221

Query: 223 --------------------DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
                               DS +W T++ G    G    A+++F  MR +GVG D  ++
Sbjct: 222 LLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTF 281

Query: 263 IAILTACSHGGLVEKGKK---------YFDEM-----------QADSVKPTE-------- 294
            +ILTAC      E+GK+         Y D +           +  S++  E        
Sbjct: 282 GSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTC 341

Query: 295 ---MHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGAWA 348
              + +  M+   G+    E+AV+    +    ++PD    G+++ +C    ++E G  A
Sbjct: 342 RNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG--A 399

Query: 349 AEHLFMLKPQHCGYYILLSN----MYAEAGKWDEASKVRELM 386
             H   L       YI +SN    +Y + G  ++A ++ + M
Sbjct: 400 QFHCLAL-VSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEM 440


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  324 bits (831), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 167/415 (40%), Positives = 254/415 (61%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y   +    A  LF  I+++N+  WN M+  +A N     A+ L  +M  +   P+  T
Sbjct: 45  LYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFT 104

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL AC+    +  GK+IH  +IR GL  D+F+  AL DMYAKCGC+  A+ VF+ I 
Sbjct: 105 FPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKID 164

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V +N ++  YSQ     ESL+L   M   G+K    +F+ +I+A A+   + QGKE
Sbjct: 165 ERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKE 224

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG + R    ++  V  +++D Y +SG +++A  +F+ L  K   SWN +I GY M G 
Sbjct: 225 LHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGH 284

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A++LF+ M+   V  D ++++ +L ACSHGGL+ +GK +F  M +D ++ PT  HY 
Sbjct: 285 ANEALDLFKEMK-GKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYT 343

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLG  G +E+A KLI  + VEPDA +WGALL +C+I+GNVE+G  A E L  L+P 
Sbjct: 344 CMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPD 403

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             G Y++LSNMYA+AGKWD  +++R+LM ++  KK+  CSW++  ++V  F+  D
Sbjct: 404 DGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSED 458



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 148/281 (52%), Gaps = 2/281 (0%)

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++L +C     + PGK++HARI + G++F+  L   L ++Y  C  L  A  +F+ IS 
Sbjct: 5   ASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISK 64

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+   +N++I GY+       ++SL+ +MR  G+  D  +F   + AC+ L+A+++GK+I
Sbjct: 65  RNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKI 124

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   IR  L + +FV  +++D Y + G ++ A ++FD +  +D   WN+++  Y   G+ 
Sbjct: 125 HKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQP 184

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           D ++ L   M  +G+     +++  + A +  GL+ +GK+          +  +     +
Sbjct: 185 DESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTAL 244

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           +D+  ++G +  A  L + L  E     W A++    ++G+
Sbjct: 245 MDMYAKSGSVNVARSLFELLE-EKRVVSWNAMITGYAMHGH 284


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  324 bits (831), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 155/418 (37%), Positives = 256/418 (61%), Gaps = 2/418 (0%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           + SR  ++  LF+++ EK+ +SW AM+A F QN L+ +A+ L REM + N   +  T  +
Sbjct: 220 RCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGS 279

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRD 122
           VL AC     L+ GK++HA IIR     ++F+ +AL DMY KC  +  A+ VF  ++ ++
Sbjct: 280 VLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKN 339

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            VS+  ++VGY Q     E++ +F +M+  G++ D  +    IS+CANLA++++G + H 
Sbjct: 340 VVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHC 399

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             +   L + + V+N+++  Y + G I+ ++++F  +   D  SW  L+ GY   G+ + 
Sbjct: 400 RALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANE 459

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMV 301
            + LFE+M   G   D V++I +L+ACS  GLV+KG + F+ M +   + P E HY CM+
Sbjct: 460 TLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMI 519

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361
           DL  RAG +E+A K I  +P  PDA  W +LL +CR + N+E+G WAAE L  L+P +  
Sbjct: 520 DLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTA 579

Query: 362 YYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
            YILLS++YA  GKW+E + +R+ M+ +  +K PGCSW++ +++V  F  +D+   F+
Sbjct: 580 SYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFS 637



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 180/372 (48%), Gaps = 34/372 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVT 60
           Y+K +   E   +FH +  +++VSWN++++ +A     L++++    M  +  F  N + 
Sbjct: 85  YSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIA 144

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---- 116
           L+ +L   ++   +  G ++H  +++ G    +F+ + L DMY+K G +  A+  F    
Sbjct: 145 LSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMP 204

Query: 117 ----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                       ++  +D +S+  +I G++Q     E++ LF E
Sbjct: 205 EKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFRE 264

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           MRL  ++ D  +F   ++AC  + A+++GK++H   IR     ++FV ++++D Y +   
Sbjct: 265 MRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKS 324

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           I  A  +F  +  K+  SW  +++GYG  G  + A+ +F  M+ +G+  D  +  +++++
Sbjct: 325 IKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISS 384

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           C++   +E+G ++        +         +V L G+ G +ED+ +L   +    + + 
Sbjct: 385 CANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVS- 443

Query: 329 WGALLGACRIYG 340
           W AL+     +G
Sbjct: 444 WTALVSGYAQFG 455



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 129/237 (54%), Gaps = 9/237 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  +  KN+VSW AM+  + QN    +A+++  +M  +   P+  T
Sbjct: 318 MYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFT 377

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+ +CA    L  G + H R +  GL   + ++NAL  +Y KCG +  +  +F+ +S
Sbjct: 378 LGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMS 437

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           + DEVS+  L+ GY+Q    +E+L LF  M   G K D V+F+G +SAC+    +++G +
Sbjct: 438 YVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQ 497

Query: 180 IHGVTIRKH----LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
           I    I++H    +  H      ++D ++R+GR++ A K  + +P   D+  W +L+
Sbjct: 498 IFESMIKEHRIIPIEDHY---TCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLL 551



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 162/392 (41%), Gaps = 108/392 (27%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           NS++L+N    C      R  K+IH  II+   N ++FL N L   YAK   +  A+ VF
Sbjct: 10  NSMSLSN--HYCELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVF 67

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN----- 170
           + +  R+  S+N L+  YS+ +   E   +F  M       D+VS+   ISA A      
Sbjct: 68  DQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMP----TRDMVSWNSLISAYAGRGFLL 123

Query: 171 --------------------------LAAIKQG-----KEIHGVTIRKHLHTHLFVANSI 199
                                     + A KQG      ++HG  ++    +++FV + +
Sbjct: 124 QSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPL 183

Query: 200 LDFYTRSGRIDLANKIFDCLP-------------------------------VKDSASWN 228
           +D Y+++G +  A + FD +P                                KDS SW 
Sbjct: 184 VDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWT 243

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK-------- 280
            +I G+   G    AI+LF  MR + +  D  ++ ++LTAC     +++GK+        
Sbjct: 244 AMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT 303

Query: 281 -YFDEM-----------QADSVKPTE-----------MHYACMVDLLGRAGLMEDAVKL- 316
            Y D +           +  S+K  E           + +  M+   G+ G  E+AVK+ 
Sbjct: 304 DYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIF 363

Query: 317 --IKNLPVEPDANIWGALLGACRIYGNVELGA 346
             ++N  +EPD    G+++ +C    ++E GA
Sbjct: 364 CDMQNNGIEPDDFTLGSVISSCANLASLEEGA 395


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  323 bits (829), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 166/414 (40%), Positives = 255/414 (61%), Gaps = 10/414 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+S +  EA  LF     +++ +W AMV+ + QNR+  +A +L  +MP  NE    V+ 
Sbjct: 260 YAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNE----VSW 315

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             +L    +G  +   KE+   +  + ++      N +   YA+CG ++ A+N+F+ +  
Sbjct: 316 NAMLAGYVQGERMEMAKELFDVMPCRNVS----TWNTMITGYAQCGKISEAKNLFDKMPK 371

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VS+  +I GYSQ+    E+L LF +M   G + +  SF  A+S CA++ A++ GK++
Sbjct: 372 RDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQL 431

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  ++    T  FV N++L  Y + G I+ AN +F  +  KD  SWNT+I GY   G  
Sbjct: 432 HGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFG 491

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
           + A+  FE+M+ +G+  D  + +A+L+ACSH GLV+KG++YF  M  D  V P   HYAC
Sbjct: 492 EVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYAC 551

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGRAGL+EDA  L+KN+P EPDA IWG LLGA R++GN EL   AA+ +F ++P++
Sbjct: 552 MVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPEN 611

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G Y+LLSN+YA +G+W +  K+R  M+ +  KK PG SW++ +++   F V D
Sbjct: 612 SGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD 665



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 140/306 (45%), Gaps = 44/306 (14%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP-------------------- 50
           A  LF  + E+++VSWN M+  + +NR   KA +L   MP                    
Sbjct: 114 ARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCV 173

Query: 51  -----IHNEFP--NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMY 103
                + +  P  N V+   +L A  +   +    E    + +   N+ L   N L   +
Sbjct: 174 DDARSVFDRMPEKNDVSWNALLSAYVQNSKM----EEACMLFKSRENWALVSWNCLLGGF 229

Query: 104 AKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM 162
            K   +  A+  F+ ++ RD VS+N +I GY+Q+    E+  LF E  +     DV ++ 
Sbjct: 230 VKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPV----QDVFTWT 285

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
             +S       +++ +E+      K    +    N++L  Y +  R+++A ++FD +P +
Sbjct: 286 AMVSGYIQNRMVEEAREL----FDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCR 341

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282
           + ++WNT+I GY   G++  A NLF+ M +     DPVS+ A++   S  G   +  + F
Sbjct: 342 NVSTWNTMITGYAQCGKISEAKNLFDKMPKR----DPVSWAAMIAGYSQSGHSFEALRLF 397

Query: 283 DEMQAD 288
            +M+ +
Sbjct: 398 VQMERE 403



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 156/337 (46%), Gaps = 30/337 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN-RLELKALQLVREMPIHNEFPNSVT 60
           Y ++ R  EA  +F  +   + VS+N M++ + +N   EL A +L  EMP      + V+
Sbjct: 74  YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFEL-ARKLFDEMPER----DLVS 128

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              ++    R   L   +E+   +  +    D+   N +   YA+ GC++ A++VF+ + 
Sbjct: 129 WNVMIKGYVRNRNLGKARELFEIMPER----DVCSWNTMLSGYAQNGCVDDARSVFDRMP 184

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +++VS+N L+  Y Q S   E+  LF       +    VS+      C     +K+ K 
Sbjct: 185 EKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL----VSW-----NCLLGGFVKKKKI 235

Query: 180 IHGVTIRKHLHTHLFVA-NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +        ++    V+ N+I+  Y +SG+ID A ++FD  PV+D  +W  ++ GY    
Sbjct: 236 VEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNR 295

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
            V+ A  LF+ M E     + VS+ A+L     G  +E  K+ FD M   +V      + 
Sbjct: 296 MVEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVST----WN 347

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            M+    + G + +A  L   +P + D   W A++  
Sbjct: 348 TMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 383



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 103/263 (39%), Gaps = 55/263 (20%)

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           D   +N+ I  Y +T  C+E+L +F  M     +   VS+ G IS               
Sbjct: 63  DIKEWNVAISSYMRTGRCNEALRVFKRMP----RWSSVSYNGMISG-------------- 104

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
                                Y R+G  +LA K+FD +P +D  SWN +I GY     + 
Sbjct: 105 ---------------------YLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLG 143

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            A  LFE M E     D  S+  +L+  +  G V+  +  FD M     +  ++ +  ++
Sbjct: 144 KARELFEIMPER----DVCSWNTMLSGYAQNGCVDDARSVFDRMP----EKNDVSWNALL 195

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--LKPQH 359
               +   ME+A  L K+         W  +   C + G V+         F   +  + 
Sbjct: 196 SAYVQNSKMEEACMLFKS------RENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRD 249

Query: 360 CGYYILLSNMYAEAGKWDEASKV 382
              +  +   YA++GK DEA ++
Sbjct: 250 VVSWNTIITGYAQSGKIDEARQL 272



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 2/143 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA+ LF  +A K+IVSWN M+A ++++     AL+    M      P+  T
Sbjct: 453 MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDAT 512

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           +  VL AC+    +  G++    + +  G+  +      + D+  + G L  A N+  N+
Sbjct: 513 MVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM 572

Query: 119 SFRDEVSYNILIVGYSQTSDCSE 141
            F  + +    ++G S+    +E
Sbjct: 573 PFEPDAAIWGTLLGASRVHGNTE 595


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  323 bits (829), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 159/411 (38%), Positives = 257/411 (62%), Gaps = 2/411 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  + +K +VSWN+M+  + QN    KA+ +  +M      P  VT
Sbjct: 292 MYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVT 351

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +   L ACA    L  GK +H  + +  L  D+ + N+L  MY+KC  +++A ++FN ++
Sbjct: 352 IMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLN 411

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS+N +I+GY+Q    SE+L+ FSEM+ LGMK D  + +  I A A L+  +  K 
Sbjct: 412 GRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKW 471

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG+ IR  L  ++FV  +++D Y++ G I +A K+FD +  +   +WN +I GYG  G 
Sbjct: 472 IHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGL 531

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++LF+ M++  V  + ++Y+++++ACSH GLV++G ++F  M+ D  ++P+  HY 
Sbjct: 532 GRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYG 591

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            MVDLLGRAG +++A   I+N+P+ P   ++GA+LGAC+I+ N+E+G  AA+ LF L P 
Sbjct: 592 AMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPD 651

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
             GY++LL+N+YA   KW + ++VR+ M+ +  KK PGCS V+ R+EV  F
Sbjct: 652 EGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSF 702



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 152/293 (51%), Gaps = 4/293 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +++K     EA+ +F  I +K    ++ M+  +A+N     AL  +  M   +  P    
Sbjct: 90  LFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYN 149

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T +L  C     L+ GKEIH ++I      ++F    + +MYAKC  ++ A  +F+ + 
Sbjct: 150 FTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMP 209

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N +I G+SQ     ++L L   M+  G + D ++ +  + A A++  +  GK 
Sbjct: 210 ERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKS 269

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  IR      + ++ ++ D Y++ G ++ A  IFD +  K   SWN+++ GY   GE
Sbjct: 270 IHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGE 329

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK---KYFDEMQADS 289
            + AI +FE M E+G+    V+ +  L AC+  G +E+GK   K+ D++   S
Sbjct: 330 PEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGS 382



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 74/161 (45%), Gaps = 4/161 (2%)

Query: 178 KEIHGV---TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           KE+H +    I+  L+        ++  +++ G I+ A ++F+ +  K  A ++T++ GY
Sbjct: 63  KELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGY 122

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
                ++TA+     MR D V     ++  +L  C     +++GK+   ++  +S     
Sbjct: 123 AKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANV 182

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                +V++  +   ++DA K+   +P E D   W  ++  
Sbjct: 183 FAMTGVVNMYAKCRQIDDAYKMFDRMP-ERDLVSWNTIIAG 222


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 159/416 (38%), Positives = 262/416 (62%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A  ++ +    ++V  + M++ +  N +  +A+++ R +      PN+V 
Sbjct: 392 IYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVA 451

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VLPACA    ++ G+E+H+  ++       ++ +AL DMYAKCG L+L+  +F+ IS
Sbjct: 452 IASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKIS 511

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +DEV++N +I  ++Q  +  E+L+LF EM + G+K+  V+    +SACA+L AI  GKE
Sbjct: 512 AKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKE 571

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHGV I+  +   LF  ++++D Y + G ++ A+++F+ +P K+  SWN++I  YG  G 
Sbjct: 572 IHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGL 631

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
           V  +++L   M+E+G   D V+++A+++AC+H G V++G + F  M  +  + P   H+A
Sbjct: 632 VKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFA 691

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDL  RAG ++ A++LI ++P +PDA IWGALL ACR++ NVEL   A++ LF L P 
Sbjct: 692 CMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPH 751

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + GYY+L+SN+ A AG+WD  SKVR LMK  + +K PG SWV   +    FV  D+
Sbjct: 752 NSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTSHLFVAADK 807



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 144/281 (51%), Gaps = 1/281 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA      +A  +F  +AE++ V WN M+  + +      A++L  +M      PN  T
Sbjct: 190 MYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFAT 249

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L   L   A    L  G ++H   ++ GL  ++ + N L  MYAKC CL+    +F +  
Sbjct: 250 LACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMP 309

Query: 121 RDE-VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           RD+ V++N +I G  Q     ++L LF +M+  G++ D V+ +  + A  +L    QGKE
Sbjct: 310 RDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKE 369

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  +R  +H  +F+ ++++D Y +   + +A  ++D     D    +T+I GY + G 
Sbjct: 370 LHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGM 429

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
              A+ +F  + E G+  + V+  ++L AC+    ++ G++
Sbjct: 430 SQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQE 470



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 189/420 (45%), Gaps = 45/420 (10%)

Query: 1   MYAKSSRPAEASYLFHNI---AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE--F 55
           MY  + R  +A  +F ++   A    + WN ++           AL    +M  H     
Sbjct: 84  MYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPL 143

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P+S T   V+ +CA    +  G+ +H      GL+ D+F+ +AL  MYA  G L  A+ V
Sbjct: 144 PDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQV 203

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ ++ RD V +N+++ GY +    S ++ LF +MR  G + +  +    +S  A  + +
Sbjct: 204 FDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDL 263

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G ++H + ++  L + + VAN+++  Y +   +D   K+F  +P  D  +WN +I G 
Sbjct: 264 FFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGC 323

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G VD A+ LF  M++ G+  D V+ +++L A +      +GK+    +  + V    
Sbjct: 324 VQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDV 383

Query: 295 MHYACMVDLLGRA-------------------------------GLMEDAVKLIKNL--- 320
              + +VD+  +                                G+ ++AVK+ + L   
Sbjct: 384 FLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQ 443

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH---CGYYILLSNMYAEAGKWD 377
            + P+A    ++L AC     ++LG     H + LK  +   C     L +MYA+ G+ D
Sbjct: 444 GIRPNAVAIASVLPACASMAAMKLG--QELHSYALKNAYEGRCYVESALMDMYAKCGRLD 501



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 122/294 (41%), Gaps = 16/294 (5%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLN-FDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           L  VL  C     L  G ++H R +  GL+  D  L   L  MY        A  VF+  
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 120 FRDEVS----YNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFMGAISACANLAA 173
            R   +    +N LI G +   D   +L  + +M         D  +F   + +CA L A
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           I  G+ +H       L   +FV ++++  Y   G +  A ++FD +  +D   WN ++ G
Sbjct: 162 IALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDG 221

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK-- 291
           Y   G V +A+ LF  MR  G   +  +    L+  +     E    +  ++   +VK  
Sbjct: 222 YVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSA----TESDLFFGVQLHTLAVKYG 277

Query: 292 -PTEMHYA-CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             +E+  A  +V +  +   ++D  KL   +P + D   W  ++  C   G V+
Sbjct: 278 LESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRD-DLVTWNGMISGCVQNGFVD 330


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 159/416 (38%), Positives = 262/416 (62%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A  ++ +    ++V  + M++ +  N +  +A+++ R +      PN+V 
Sbjct: 392 IYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVA 451

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VLPACA    ++ G+E+H+  ++       ++ +AL DMYAKCG L+L+  +F+ IS
Sbjct: 452 IASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKIS 511

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +DEV++N +I  ++Q  +  E+L+LF EM + G+K+  V+    +SACA+L AI  GKE
Sbjct: 512 AKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKE 571

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHGV I+  +   LF  ++++D Y + G ++ A+++F+ +P K+  SWN++I  YG  G 
Sbjct: 572 IHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGL 631

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
           V  +++L   M+E+G   D V+++A+++AC+H G V++G + F  M  +  + P   H+A
Sbjct: 632 VKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFA 691

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDL  RAG ++ A++LI ++P +PDA IWGALL ACR++ NVEL   A++ LF L P 
Sbjct: 692 CMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPH 751

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + GYY+L+SN+ A AG+WD  SKVR LMK  + +K PG SWV   +    FV  D+
Sbjct: 752 NSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTSHLFVAADK 807



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 144/281 (51%), Gaps = 1/281 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA      +A  +F  +AE++ V WN M+  + +      A++L  +M      PN  T
Sbjct: 190 MYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFAT 249

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L   L   A    L  G ++H   ++ GL  ++ + N L  MYAKC CL+    +F +  
Sbjct: 250 LACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMP 309

Query: 121 RDE-VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           RD+ V++N +I G  Q     ++L LF +M+  G++ D V+ +  + A  +L    QGKE
Sbjct: 310 RDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKE 369

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  +R  +H  +F+ ++++D Y +   + +A  ++D     D    +T+I GY + G 
Sbjct: 370 LHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGM 429

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
              A+ +F  + E G+  + V+  ++L AC+    ++ G++
Sbjct: 430 SQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQE 470



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 189/420 (45%), Gaps = 45/420 (10%)

Query: 1   MYAKSSRPAEASYLFHNI---AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE--F 55
           MY  + R  +A  +F ++   A    + WN ++           AL    +M  H     
Sbjct: 84  MYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPL 143

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P+S T   V+ +CA    +  G+ +H      GL+ D+F+ +AL  MYA  G L  A+ V
Sbjct: 144 PDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQV 203

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ ++ RD V +N+++ GY +    S ++ LF +MR  G + +  +    +S  A  + +
Sbjct: 204 FDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDL 263

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G ++H + ++  L + + VAN+++  Y +   +D   K+F  +P  D  +WN +I G 
Sbjct: 264 FFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGC 323

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G VD A+ LF  M++ G+  D V+ +++L A +      +GK+    +  + V    
Sbjct: 324 VQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDV 383

Query: 295 MHYACMVDLLGRA-------------------------------GLMEDAVKLIKNL--- 320
              + +VD+  +                                G+ ++AVK+ + L   
Sbjct: 384 FLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQ 443

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH---CGYYILLSNMYAEAGKWD 377
            + P+A    ++L AC     ++LG     H + LK  +   C     L +MYA+ G+ D
Sbjct: 444 GIRPNAVAIASVLPACASMAAMKLG--QELHSYALKNAYEGRCYVESALMDMYAKCGRLD 501



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 122/294 (41%), Gaps = 16/294 (5%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLN-FDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           L  VL  C     L  G ++H R +  GL+  D  L   L  MY        A  VF+  
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 120 FRDEVS----YNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFMGAISACANLAA 173
            R   +    +N LI G +   D   +L  + +M         D  +F   + +CA L A
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           I  G+ +H       L   +FV ++++  Y   G +  A ++FD +  +D   WN ++ G
Sbjct: 162 IALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDG 221

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK-- 291
           Y   G V +A+ LF  MR  G   +  +    L+  +     E    +  ++   +VK  
Sbjct: 222 YVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSA----TESDLFFGVQLHTLAVKYG 277

Query: 292 -PTEMHYA-CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             +E+  A  +V +  +   ++D  KL   +P + D   W  ++  C   G V+
Sbjct: 278 LESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRD-DLVTWNGMISGCVQNGFVD 330


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/420 (39%), Positives = 262/420 (62%), Gaps = 10/420 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++     +A  LF ++  ++  SWNAM++ + QN    +AL +  EM +     +++T
Sbjct: 38  MYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAIT 97

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + +VLP CA+   +  GK IH  +I+ GL F+LF++NAL +MYAK G L  AQ VF +  
Sbjct: 98  VASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI 157

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV-----SFMGAISACANLAAIK 175
           +D VS+N LI GY+Q    SE++    E+ LL  +H+ +     +++  + A +++ A++
Sbjct: 158 KDVVSWNTLITGYAQNGLASEAI----EVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQ 213

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           QG  IHG  I+  L++ +FV   ++D Y + G++D A  +F  +P K+S  WN +I  YG
Sbjct: 214 QGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYG 273

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
           + G+ + A+ LF  M+ + V  D ++++++L+ACSH GLV   +  F+ M+ +  +KP+ 
Sbjct: 274 VHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSL 333

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HY CMVDL GRAG +E A   IK +P++PDA+ WGALL ACRI+GN+ELG  A+E LF 
Sbjct: 334 KHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFE 393

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +  ++ GYY+LLSN+YA  GKW+    VR L + R  +KNPG S +   ++V  F   ++
Sbjct: 394 VDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQ 453



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 167/312 (53%), Gaps = 17/312 (5%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRD 122
           V+ AC     L  GK+IH  +++ G  +D+F+  +L  MY++ G +  A+ +F ++  RD
Sbjct: 3   VVKACGD---LLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARD 59

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
             S+N +I GY Q  + +E+L +  EMRL G+K D ++    +  CA +  I  GK IH 
Sbjct: 60  RGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHL 119

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             I+  L   LFV+N++++ Y + G +  A K+F  L +KD  SWNTLI GY   G    
Sbjct: 120 YVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLL-IKDVVSWNTLITGYAQNGLASE 178

Query: 243 AINLFEAMRE-DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
           AI ++  M E + +  +  ++++IL A SH G +++G +   ++  + +        C++
Sbjct: 179 AIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLI 238

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF------ML 355
           D+ G+ G ++DA+ L   +P   ++  W A++    ++G+ E     A  LF       +
Sbjct: 239 DMYGKCGKLDDAISLFYQVP-RKNSVPWNAMISCYGVHGDGE----KALELFREMKAERV 293

Query: 356 KPQHCGYYILLS 367
           KP H  +  LLS
Sbjct: 294 KPDHITFVSLLS 305


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 156/414 (37%), Positives = 260/414 (62%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    ++A ++F  I  +++VSW  ++  +AQN +  +AL L+ +M      P+  T
Sbjct: 106 MYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFT 165

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T+ L A         G+++HA  ++  L+ D+++ +AL DMYA+C  +++A  VF+ + 
Sbjct: 166 FTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLD 225

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++EVS+N LI G+++  D   +L  F+EM+  G      ++    SA A + A++QG+ 
Sbjct: 226 SKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRW 285

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+       FVAN+IL  Y +SG +  A K+FD +  +D  +WNT++  +   G 
Sbjct: 286 VHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGL 345

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+  FE +R+ G+  + ++++++LTACSHGGLV++GK+YFD M+  +V+P   HY  
Sbjct: 346 GKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVS 405

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
            VDLLGRAGL+++A+  +  +P+EP A +WGALLGACR++ N ++G +AA+H+F L P+ 
Sbjct: 406 FVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPED 465

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G  +LL N+YA  G+WD+A++VR++MK+   KK P CSWV+  + V  FV +D
Sbjct: 466 TGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADD 519



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 151/301 (50%), Gaps = 11/301 (3%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P      +++ ACA+   L   + IH+ + R  L  D FL N+L  MY KCG ++ A++V
Sbjct: 60  PTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHV 119

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM---RLLGMKHDVVSFMGAISACANL 171
           F+ I  RD VS+  LI GY+Q    +E+L L  +M   R         SF+ A  AC   
Sbjct: 120 FDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGR 179

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
                G+++H + ++ +L   ++V +++LD Y R  ++D+A ++FD L  K+  SWN LI
Sbjct: 180 GI---GEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALI 236

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
            G+   G+ +T +  F  M+ +G G    +Y ++ +A +  G +E+G+     M     K
Sbjct: 237 AGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQK 296

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
            T      ++ +  ++G M DA K+   +  + D   W  +L A   YG   LG  A  H
Sbjct: 297 LTAFVANTILGMYAKSGSMVDARKVFDRVD-QRDLVTWNTMLTAFAQYG---LGKEAVAH 352

Query: 352 L 352
            
Sbjct: 353 F 353


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 159/414 (38%), Positives = 258/414 (62%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K    A+A  +F  +  +++ SW +++A +AQN +  +AL L+  M      PN  T
Sbjct: 108 LYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFT 167

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L A         G++IHA  ++   + D+++ +AL DMYA+CG +++A  VF+ + 
Sbjct: 168 FASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLE 227

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N LI G+++  D   +L +F+EM+  G +    ++    SA A + A++QGK 
Sbjct: 228 SKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKW 287

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+       FV N+ILD Y +SG +  A K+FD +  KD  +WN+++  +   G 
Sbjct: 288 VHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGL 347

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+  FE MR+ GV  + +++++ILTACSHGGLV++GK+YFD M+  +++P   HY  
Sbjct: 348 GREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVT 407

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLLGRAGL+ DA+  I  +P++P A +WGALLG+CR++ N ++G +AA+H+F L P  
Sbjct: 408 VVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDD 467

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G  +LL N+YA  G+WD A++VR++MK+   KK P CSWV+  + V  FV ND
Sbjct: 468 TGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVAND 521



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 152/303 (50%), Gaps = 7/303 (2%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           +++ ACAR   L   + IHA +        +FL N+L  +Y KCG +  A+ VF+ +  R
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           D  S+  LI GY+Q     E+L L   M     K +  +F   + A    A+   G++IH
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 188

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
            +T++   H  ++V +++LD Y R GR+D+A  +FD L  K+  SWN LI G+   G+ +
Sbjct: 189 ALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGE 248

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
           T + +F  M+ +G      +Y ++ +A +  G +E+GK     M     + +      ++
Sbjct: 249 TTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 308

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361
           D+  ++G M DA K+   +  + D   W ++L A   YG   LG  A  H   ++   CG
Sbjct: 309 DMYAKSGSMIDARKVFDRVD-KKDVVTWNSMLTAFAQYG---LGREAVTHFEEMRK--CG 362

Query: 362 YYI 364
            ++
Sbjct: 363 VHL 365



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 17/230 (7%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           I+ACA   ++   + IH           +F+ NS++  Y + G +  A ++FD +P +D 
Sbjct: 71  ITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDM 130

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            SW +LI GY      D A+ L   M       +  ++ ++L A         G    ++
Sbjct: 131 CSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIG----EQ 186

Query: 285 MQADSVKPTEMH-----YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG--ACR 337
           + A +VK  + H      + ++D+  R G M+ A+ +   L  +   + W AL+   A +
Sbjct: 187 IHALTVK-YDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVS-WNALIAGFARK 244

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA----EAGKWDEASKVR 383
             G   L  +A       +  H  Y  + S +      E GKW  A  ++
Sbjct: 245 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIK 294


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 159/414 (38%), Positives = 258/414 (62%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K    A+A  +F  +  +++ SW +++A +AQN +  +AL L+  M      PN  T
Sbjct: 108 LYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFT 167

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L A         G++IHA  ++   + D+++ +AL DMYA+CG +++A  VF+ + 
Sbjct: 168 FASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLE 227

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N LI G+++  D   +L +F+EM+  G +    ++    SA A + A++QGK 
Sbjct: 228 SKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKW 287

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+       FV N+ILD Y +SG +  A K+FD +  KD  +WN+++  +   G 
Sbjct: 288 VHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGL 347

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+  FE MR+ GV  + +++++ILTACSHGGLV++GK+YFD M+  +++P   HY  
Sbjct: 348 GREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVT 407

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLLGRAGL+ DA+  I  +P++P A +WGALLG+CR++ N ++G +AA+H+F L P  
Sbjct: 408 VVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDD 467

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G  +LL N+YA  G+WD A++VR++MK+   KK P CSWV+  + V  FV ND
Sbjct: 468 TGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVAND 521



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 152/303 (50%), Gaps = 7/303 (2%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           +++ ACAR   L   + IHA +        +FL N+L  +Y KCG +  A+ VF+ +  R
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           D  S+  LI GY+Q     E+L L   M     K +  +F   + A    A+   G++IH
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 188

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
            +T++   H  ++V +++LD Y R GR+D+A  +FD L  K+  SWN LI G+   G+ +
Sbjct: 189 ALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGE 248

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
           T + +F  M+ +G      +Y ++ +A +  G +E+GK     M     + +      ++
Sbjct: 249 TTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 308

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361
           D+  ++G M DA K+   +  + D   W ++L A   YG   LG  A  H   ++   CG
Sbjct: 309 DMYAKSGSMIDARKVFDRVD-KKDVVTWNSMLTAFAQYG---LGREAVTHFEEMRK--CG 362

Query: 362 YYI 364
            ++
Sbjct: 363 VHL 365



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 17/230 (7%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           I+ACA   ++   + IH           +F+ NS++  Y + G +  A ++FD +P +D 
Sbjct: 71  ITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDM 130

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            SW +LI GY      D A+ L   M       +  ++ ++L A         G    ++
Sbjct: 131 CSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIG----EQ 186

Query: 285 MQADSVKPTEMH-----YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG--ACR 337
           + A +VK  + H      + ++D+  R G M+ A+ +   L  +   + W AL+   A +
Sbjct: 187 IHALTVK-YDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVS-WNALIAGFARK 244

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA----EAGKWDEASKVR 383
             G   L  +A       +  H  Y  + S +      E GKW  A  ++
Sbjct: 245 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIK 294


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 160/416 (38%), Positives = 261/416 (62%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+  S     + +F N+ +KN+VSW AM+ ++ +  L  K   L +EM +    P+   
Sbjct: 341 MYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFA 400

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T+ L A A    L+ GK +H   IR G+   L +TNAL +MY KCG +  A+ +F+ + 
Sbjct: 401 ITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVV 460

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+N LI GYS+ +  +E+ SLF+EM LL ++ + V+    + A A+L+++++G+E
Sbjct: 461 SKDMISWNTLIGGYSRNNLANEAFSLFTEM-LLQLRPNAVTMTCILPAAASLSSLERGRE 519

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +R+      FVAN+++D Y + G + LA ++FD L  K+  SW  ++ GYGM G 
Sbjct: 520 MHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGR 579

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AI LFE MR  G+  D  S+ AIL ACSH GL ++G ++FD M+ +  ++P   HY 
Sbjct: 580 GRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYT 639

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLL   G +++A + I ++P+EPD++IW +LL  CRI+ NV+L    AE +F L+P+
Sbjct: 640 CMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPE 699

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + GYY+LL+N+YAEA +W+   K++  +  R  ++N GCSW++ + +V  F+ ++R
Sbjct: 700 NTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNR 755



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 192/420 (45%), Gaps = 48/420 (11%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAKS+R  +A  +F  +  ++++SWN+M++    N L  KA++L   M +  E  +S TL
Sbjct: 241 YAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATL 300

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            +VLPACA  H L  G+ +H   ++ G      L N L DMY+ C        +F N+  
Sbjct: 301 LSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQ 360

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ VS+  +I  Y++     +   LF EM L G + D+ +   A+ A A    +K GK +
Sbjct: 361 KNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSV 420

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  IR  +   L V N++++ Y + G ++ A  IFD +  KD  SWNTLI GY      
Sbjct: 421 HGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLA 480

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF----------DEMQADSV 290
           + A +LF  M    +  + V+   IL A +    +E+G++            D+  A+++
Sbjct: 481 NEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANAL 539

Query: 291 KPTEMHYACMVDLLGRA-----------------------GLMEDAVKLIKNLPVE---P 324
              +M+  C   LL R                        G   DA+ L + + V    P
Sbjct: 540 --IDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAP 597

Query: 325 DANIWGALLGACRIYGNVELG-----AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA 379
           DA  + A+L AC   G  + G     A   EH    + +H   Y  + ++    G   EA
Sbjct: 598 DAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKH---YTCMVDLLINTGNLKEA 654



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 152/337 (45%), Gaps = 3/337 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAE-KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MY K      A  +F  + +  ++  W A+++ +A+     + + L R+M      P++ 
Sbjct: 138 MYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAY 197

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T++ VL   A    +  G+ +H  + + G      + NAL   YAK      A  VF+ +
Sbjct: 198 TISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGM 257

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD +S+N +I G +      +++ LF  M L G + D  + +  + ACA L  +  G+
Sbjct: 258 PHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGR 317

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +HG +++    +   +AN +LD Y+        NKIF  +  K+  SW  +I  Y   G
Sbjct: 318 VVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAG 377

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             D    LF+ M  +G   D  +  + L A +   L++ GK        + ++       
Sbjct: 378 LYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTN 437

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            ++++  + G ME+A KLI +  V  D   W  L+G 
Sbjct: 438 ALMEMYVKCGNMEEA-KLIFDGVVSKDMISWNTLIGG 473



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 105/221 (47%), Gaps = 5/221 (2%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLN---FDLFLTNALTDMYAKCGCLNLAQNVFN--I 118
           VL  C+    L  GK  H  +    L     D  L   L  MY KCG L  A+ VF+   
Sbjct: 97  VLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMP 156

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              D   +  L+ GY++  D  E + LF +M   G++ D  +    +   A L +I+ G+
Sbjct: 157 QVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGE 216

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +HG+  +    +   V N+++ FY +S R   A  +FD +P +D  SWN++I G    G
Sbjct: 217 VVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNG 276

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
             D AI LF  M  +G   D  + +++L AC+   L+  G+
Sbjct: 277 LYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGR 317


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 166/417 (39%), Positives = 250/417 (59%), Gaps = 2/417 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A  +FH I +K + SWNA++   AQN    KAL L+ +M    + P+  T+
Sbjct: 395 YAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTI 454

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           +++L ACA    L+ GKEIH  ++R GL  D F+  +L   Y  CG  + A+ +F+ +  
Sbjct: 455 SSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKD 514

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ VS+N +I GYSQ     ESL+LF +    G++   ++ +    AC+ L+A++ GKE 
Sbjct: 515 KNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEA 574

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  ++       FV  SI+D Y +SG I  + K+FD L  K+ ASWN +I+ +G+ G  
Sbjct: 575 HGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHG 634

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYAC 299
             AI L+E M++ G   D  +YI IL AC H GLVE+G KYF EMQ  + ++P   HYAC
Sbjct: 635 KEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYAC 694

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           ++D+L RAG ++DA++L+  +P E D  IW +LL +CR +G +E+G   A+ L  L+P  
Sbjct: 695 LIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDK 754

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMK 416
              Y+LLSN+YA  GKWD   +VR++MK    +K+ GCSW++    V  FVV D ++
Sbjct: 755 AENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQ 811



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 153/284 (53%), Gaps = 5/284 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           MY K     EA  +F  + E N+VSWN+M+  F++N     +  L+ EM       P+ V
Sbjct: 190 MYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVV 249

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T+  +LP CA    +  G  IH   ++ GL+ ++ + NA+  MY+KCG LN AQ  F   
Sbjct: 250 TVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKN 309

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAIKQ 176
           + ++ VS+N +I  +S   D +E+ +L  EM++ G  MK + V+ +  + AC +   ++ 
Sbjct: 310 NNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRS 369

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            KE+HG + R H   H+ ++N+ +  Y + G ++ A K+F  +  K  +SWN LI G+  
Sbjct: 370 LKELHGYSFR-HCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQ 428

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            G+   A++L   M   G   D  +  ++L AC+H   ++ GK+
Sbjct: 429 NGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKE 472



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 158/301 (52%), Gaps = 19/301 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MYA    P ++  +F N+  KN++ WNA+V+ + +N L    +++  ++    +F P++ 
Sbjct: 88  MYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNF 147

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T  +V+ AC     +R G+ IH  +I+ GL  D+F+ NAL  MY KCG ++ A  VF+ +
Sbjct: 148 TFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFM 207

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQG 177
              + VS+N +I  +S+     +S  L  EM    G+  DVV+ +  +  CA    +  G
Sbjct: 208 PETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIG 267

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
             IHG+ ++  L   + V N+++  Y++ G ++ A   F     K+  SWNT+I  + + 
Sbjct: 268 MGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLE 327

Query: 238 GEVDTAINLFEAMREDG--VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
           G+V+ A NL + M+  G  +  + V+ + +L AC             D++Q  S+K  E+
Sbjct: 328 GDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC------------LDKLQLRSLK--EL 373

Query: 296 H 296
           H
Sbjct: 374 H 374



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 137/287 (47%), Gaps = 13/287 (4%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
           +L AC     +  G+ +H + +    ++  D  L   L  MYA CG    ++ VF N+  
Sbjct: 49  LLQACGNQKDIETGRRLH-KFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMET 107

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           ++ + +N L+ GY++     + + +F ++      + D  +F   I AC  +  ++ G+ 
Sbjct: 108 KNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEV 167

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG- 238
           IHG+ I+  L   +FV N+++  Y + G +D A K+FD +P  +  SWN++I  +   G 
Sbjct: 168 IHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGF 227

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             D+   L E + E+G+  D V+ + IL  C+  G V+ G           +    M   
Sbjct: 228 SRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNN 287

Query: 299 CMVDLLGRAGLMEDA-VKLIKNLPVEPDANI--WGALLGACRIYGNV 342
            MV +  + G + +A +  +KN     + N+  W  ++ A  + G+V
Sbjct: 288 AMVYMYSKCGYLNEAQMSFVKN----NNKNVVSWNTMISAFSLEGDV 330



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 9/122 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS    E+  +F  + +KN+ SWNA++     +    +A++L   M    + P+  T
Sbjct: 596 MYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFT 655

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTN-----ALTDMYAKCGCLNLAQNV 115
              +L AC     +  G     +  ++  NF+L          L DM A+ G L+ A  +
Sbjct: 656 YIGILMACGHAGLVEEG----LKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRL 711

Query: 116 FN 117
            N
Sbjct: 712 VN 713


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 169/415 (40%), Positives = 252/415 (60%), Gaps = 4/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+   R  EA  +F  +  K++VSW AM+A+   ++L  KA++  + M +    P+ +T
Sbjct: 343 MYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEIT 402

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L +VL ACA    L  G  +H   I+ GL   + ++N+L DMY+KC C++ A  VF NIS
Sbjct: 403 LVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNIS 462

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+  LI+G    +   E+L  F +M+   MK + V+ +  +SACA + A+ +GKE
Sbjct: 463 GKNVVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSACARIGALMRGKE 521

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +R  +    F+ N+ILD Y R GR   A   F+    KD  +WN L+ GY   G+
Sbjct: 522 IHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQGQ 580

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LF+ M E  +  D +++I++L ACS  G+V +G +YF+ M+   ++ P   HYA
Sbjct: 581 AKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYA 640

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VD+LGRAG ++DA   I+++P+ PDA IWGALL ACRI+ NVELG  AA+ +F    +
Sbjct: 641 CVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNK 700

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             GYYILL N+YA  G WD+ SKVR LM+ R    +PGCSWV+ + +V  F+  D
Sbjct: 701 SVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGD 755



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 173/339 (51%), Gaps = 2/339 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ +     +A Y+F  ++E+++ SWN +V  +A+     +AL L   M      PN  T
Sbjct: 141 MFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYT 200

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL  CA    +  GKEIHA +IR G   D+ + NAL  MY KCG ++ A+ +F+ + 
Sbjct: 201 FPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMP 260

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+N +I GY +     E L LFS MR L +  D+++     SAC  L   + G+ 
Sbjct: 261 KRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRG 320

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  ++      + + NS++  Y+  GR++ A  +F  +  KD  SW  +I        
Sbjct: 321 VHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKL 380

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+  ++ M  +G+  D ++ +++L+AC+  G ++ G +  +      +    +    
Sbjct: 381 PFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNS 440

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
           ++D+  +   +++A+++ +N+  +   + W +L+   RI
Sbjct: 441 LIDMYSKCKCVDNALEVFRNISGKNVVS-WTSLILGLRI 478



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 132/290 (45%), Gaps = 43/290 (14%)

Query: 95  LTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
           L NAL  M+ + G L  A  VF  +S RD  S+N+L+ GY++     E+L+L+  M    
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
           ++ +V +F   +  CA ++ I +GKEIH   IR    + + V N+++  Y + G I  A 
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNAR 253

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS--- 270
            +FD +P +D  SWN +I GY   G     + LF  MRE  V  D ++   + +AC    
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLD 313

Query: 271 --------HG------------------------GLVEKGKKYFDEMQADSVKPTEMHYA 298
                   HG                        G +E+ +  F  M++  V    + + 
Sbjct: 314 NERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDV----VSWT 369

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVE---PDANIWGALLGACRIYGNVELG 345
            M+  L    L   AV+  K + +E   PD     ++L AC   G+++LG
Sbjct: 370 AMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLG 419



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 95/235 (40%), Gaps = 43/235 (18%)

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           + N++L  + R G +  A  +F  +  +D  SWN L+ GY   G  D A+NL+  M    
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKK---------------------------------- 280
           +  +  ++ ++L  C+    + +GK+                                  
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNAR 253

Query: 281 -YFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
             FD+M + D +    M      +  G  GL  +   +++ L V+PD      +  AC +
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGL--ELFSMMRELSVDPDLITMTTVASACEL 311

Query: 339 YGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDEASKVRELMKSRE 390
             N  LG     H +++K +  G   +   L  MY+  G+ +EA  V   M+S++
Sbjct: 312 LDNERLG--RGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKD 364


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 169/415 (40%), Positives = 252/415 (60%), Gaps = 4/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+   R  EA  +F  +  K++VSW AM+A+   ++L  KA++  + M +    P+ +T
Sbjct: 343 MYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEIT 402

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L +VL ACA    L  G  +H   I+ GL   + ++N+L DMY+KC C++ A  VF NIS
Sbjct: 403 LVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNIS 462

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+  LI+G    +   E+L  F +M+   MK + V+ +  +SACA + A+ +GKE
Sbjct: 463 GKNVVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSACARIGALMRGKE 521

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +R  +    F+ N+ILD Y R GR   A   F+    KD  +WN L+ GY   G+
Sbjct: 522 IHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQGQ 580

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LF+ M E  +  D +++I++L ACS  G+V +G +YF+ M+   ++ P   HYA
Sbjct: 581 AKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYA 640

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VD+LGRAG ++DA   I+++P+ PDA IWGALL ACRI+ NVELG  AA+ +F    +
Sbjct: 641 CVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNK 700

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             GYYILL N+YA  G WD+ SKVR LM+ R    +PGCSWV+ + +V  F+  D
Sbjct: 701 SVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGD 755



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 173/339 (51%), Gaps = 2/339 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ +     +A Y+F  ++E+++ SWN +V  +A+     +AL L   M      PN  T
Sbjct: 141 MFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYT 200

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL  CA    +  GKEIHA +IR G   D+ + NAL  MY KCG ++ A+ +F+ + 
Sbjct: 201 FPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMP 260

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+N +I GY +     E L LFS MR L +  D+++     SAC  L   + G+ 
Sbjct: 261 KRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRG 320

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  ++      + + NS++  Y+  GR++ A  +F  +  KD  SW  +I        
Sbjct: 321 VHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKL 380

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+  ++ M  +G+  D ++ +++L+AC+  G ++ G +  +      +    +    
Sbjct: 381 PFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNS 440

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
           ++D+  +   +++A+++ +N+  + +   W +L+   RI
Sbjct: 441 LIDMYSKCKCVDNALEVFRNISGK-NVVSWTSLILGLRI 478



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 132/290 (45%), Gaps = 43/290 (14%)

Query: 95  LTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
           L NAL  M+ + G L  A  VF  +S RD  S+N+L+ GY++     E+L+L+  M    
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
           ++ +V +F   +  CA ++ I +GKEIH   IR    + + V N+++  Y + G I  A 
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNAR 253

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS--- 270
            +FD +P +D  SWN +I GY   G     + LF  MRE  V  D ++   + +AC    
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLD 313

Query: 271 --------HG------------------------GLVEKGKKYFDEMQADSVKPTEMHYA 298
                   HG                        G +E+ +  F  M++  V    + + 
Sbjct: 314 NERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDV----VSWT 369

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVE---PDANIWGALLGACRIYGNVELG 345
            M+  L    L   AV+  K + +E   PD     ++L AC   G+++LG
Sbjct: 370 AMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLG 419



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 95/235 (40%), Gaps = 43/235 (18%)

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           + N++L  + R G +  A  +F  +  +D  SWN L+ GY   G  D A+NL+  M    
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKK---------------------------------- 280
           +  +  ++ ++L  C+    + +GK+                                  
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNAR 253

Query: 281 -YFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
             FD+M + D +    M      +  G  GL  +   +++ L V+PD      +  AC +
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGL--ELFSMMRELSVDPDLITMTTVASACEL 311

Query: 339 YGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDEASKVRELMKSRE 390
             N  LG     H +++K +  G   +   L  MY+  G+ +EA  V   M+S++
Sbjct: 312 LDNERLG--RGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKD 364


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 170/459 (37%), Positives = 257/459 (55%), Gaps = 46/459 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ K  R   A   F  I  K++  WN MV+ +       KAL + R+M +    PNS+T
Sbjct: 155 MFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSIT 214

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNVF--- 116
           + + + AC     LR G+EIH   I+ + L+ DL + N+L D YAKC  + +A+  F   
Sbjct: 215 IASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMI 274

Query: 117 -----------------------------------------NISFRDEVSYNILIVGYSQ 135
                                                     +S RD V +N +I   +Q
Sbjct: 275 KQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQ 334

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
           +     +L L  EM L  ++ + V+ + A+ AC+ LAA++QGKEIH   IR  L T  F+
Sbjct: 335 SGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFI 394

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            NS++D Y R G I  + +IFD +P +D  SWN +I  YGM G    A+NLF+  R  G+
Sbjct: 395 LNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGL 454

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAV 314
             + +++  +L+ACSH GL+E+G KYF  M+ + ++ P    YACMVDLL RAG   + +
Sbjct: 455 KPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETL 514

Query: 315 KLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374
           + I+ +P EP+A +WG+LLGACRI+ N +L  +AA +LF L+PQ  G Y+L++N+Y+ AG
Sbjct: 515 EFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAG 574

Query: 375 KWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +W++A+K+R LMK R   K PGCSW++ + ++  FVV D
Sbjct: 575 RWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGD 613



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 106/442 (23%), Positives = 205/442 (46%), Gaps = 57/442 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y ++    +A  +F  ++E+N+ SW A++  +       + ++L   M      P+   
Sbjct: 54  VYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFV 113

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V  AC+     R GK+++  ++  G   +  +  ++ DM+ KCG +++A+  F  I 
Sbjct: 114 FPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIE 173

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           F+D   +NI++ GY+   +  ++L++F +M L G+K + ++   A+SAC NL+ ++ G+E
Sbjct: 174 FKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGRE 233

Query: 180 IHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL--ILGYGM 236
           IHG  I+ + L + L V NS++D+Y +   +++A + F  +   D  SWN +  + G+  
Sbjct: 234 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQ 293

Query: 237 LGEVDTAINLFEAMR------EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
            G+   A+  F+ M        +    D V + +I++AC+  G          EM   +V
Sbjct: 294 YGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNV 353

Query: 291 ---------------------KPTEMHY--------AC------MVDLLGRAGLMEDAVK 315
                                +  E+H          C      ++D+ GR G ++ + +
Sbjct: 354 EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRR 413

Query: 316 LIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM------LKPQHCGYYILLSNM 369
           +   +P + D   W  ++    +YG    G   A +LF       LKP H  +  LLS  
Sbjct: 414 IFDLMP-QRDLVSWNVMIS---VYGMHGFGM-DAVNLFQQFRTMGLKPNHITFTNLLSAC 468

Query: 370 YAEAGKWDEASKVRELMKSREA 391
            + +G  +E  K  ++MK+  A
Sbjct: 469 -SHSGLIEEGWKYFKMMKTEYA 489



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           ++L  C + + LR G ++HA+++  G++   FL + L ++Y + GC+  A+ +F+ +S R
Sbjct: 15  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 74

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           +  S+  ++  Y    D  E++ LF  M   G++ D   F     AC+ L   + GK+++
Sbjct: 75  NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 134

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
              +      +  V  SILD + + GR+D+A + F+ +  KD   WN ++ GY   GE  
Sbjct: 135 DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK 194

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            A+N+F  M  +GV  + ++  + ++AC++  L+  G++
Sbjct: 195 KALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGRE 233



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 79/175 (45%), Gaps = 1/175 (0%)

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           +   +  C  L  ++ G ++H   +   +    F+ + +L+ Y ++G ++ A ++FD + 
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 72

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            ++  SW  ++  Y  LG+ +  I LF  M  +GV  D   +  +  ACS       GK 
Sbjct: 73  ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 132

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            +D M +   +        ++D+  + G M+ A +  + +  + D  +W  ++  
Sbjct: 133 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVSG 186


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  321 bits (822), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 155/422 (36%), Positives = 260/422 (61%), Gaps = 2/422 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A  +F+   + +IV + AM++ +  N +   AL++ R +      PN++T
Sbjct: 256 LYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALT 315

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +++LPACA    ++ G+E+H  II+  L     + +A+ +MYAKCG L+LA  +F  IS
Sbjct: 316 FSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRIS 375

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D + +N +I  +SQ     E++ LF +M + G+K+D V+   A+SACAN+ A+  GKE
Sbjct: 376 IKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKE 435

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  I+    + LF  +++++ Y + G++++A  +F+ +  K+  +WN++I  YG  G 
Sbjct: 436 IHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGY 495

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HYA 298
           +  ++ LF  M E+G+  D ++++ IL++C H G VE G +YF  M  +   P +M HYA
Sbjct: 496 LADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYA 555

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM DL GRAG +++A ++I ++P  P A++WG LLGACR++GNVEL   A+ +L  L+P+
Sbjct: 556 CMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEVASRYLLDLEPK 615

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
           + GYY+LL+++ A+AGKW    K++ LMK R  +K PGCSW++  +    F   D     
Sbjct: 616 NSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQKVPGCSWIEVNNTTCVFFAADGSHPE 675

Query: 419 TP 420
           +P
Sbjct: 676 SP 677



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 204/390 (52%), Gaps = 7/390 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K  +  +A  LF  + + ++V WN M+  + QN     A  L  EM      P+S+T
Sbjct: 155 VYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSIT 214

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            T+ LP+ A    L+  KEIH  I+R G+  D++L +AL D+Y KC    +A  +FN+S 
Sbjct: 215 FTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLST 274

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           + D V Y  +I GY       ++L +F  +    M  + ++F   + ACA LAAIK G+E
Sbjct: 275 KFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRE 334

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  I+  L     V ++I++ Y + GR+DLA+ IF  + +KD+  WN++I  +   G+
Sbjct: 335 LHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGK 394

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + AI LF  M  +GV YD V+  A L+AC++   +  GK+    M   + +      + 
Sbjct: 395 PEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSA 454

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM---LK 356
           ++++  + G +  A +L+ NL  E +   W +++ A   +G +   + A  H  +   ++
Sbjct: 455 LINMYAKCGKLNIA-RLVFNLMQEKNEVAWNSIIAAYGYHGYLA-DSLALFHNMLEEGIQ 512

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELM 386
           P H  +  +LS+    AG+ ++  +    M
Sbjct: 513 PDHITFLTILSSC-GHAGQVEDGVRYFRCM 541



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 175/375 (46%), Gaps = 40/375 (10%)

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
           FP+  T   V+  C   + +R GK I   I+  G + D+F+ ++L  +YA  GC+  A+ 
Sbjct: 7   FPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARR 66

Query: 115 VFNISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
            F+    +D V +N++I GY Q  +   ++ LF +M     K D V+F   +S   + A 
Sbjct: 67  FFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAM 126

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           ++ G+++HG+ +R  L     V N+++  Y++  ++  A K+FD +P  D   WN +I G
Sbjct: 127 VEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGG 186

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG---- 278
           Y   G +D A  LF  M   G+  D +++ + L + +           HG +V  G    
Sbjct: 187 YVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILD 246

Query: 279 --------KKYFD--------EMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-- 320
                     YF         +M   S K   + Y  M+      G+ +DA+++ + L  
Sbjct: 247 VYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQ 306

Query: 321 -PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQHCGYYILLSNMYAEAGKW 376
             + P+A  + ++L AC     ++LG     H +++K    + C     + NMYA+ G+ 
Sbjct: 307 KKMIPNALTFSSILPACAGLAAIKLG--RELHGYIIKNELEEKCPVGSAIMNMYAKCGRL 364

Query: 377 DEASKVRELMKSREA 391
           D A  +   +  ++A
Sbjct: 365 DLAHLIFGRISIKDA 379



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 196/428 (45%), Gaps = 42/428 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YA +    +A   F  + +K+ V WN M+  + Q      A++L ++M      P+SVT
Sbjct: 54  LYADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVT 113

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
              VL        +  G+++H  ++R GL+F   + N L  +Y+K   L  A+ +F++  
Sbjct: 114 FACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMP 173

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           + D V +N +I GY Q     ++  LF+EM   G+K D ++F   + + A  +++KQ KE
Sbjct: 174 QIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKE 233

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R  +   +++ ++++D Y +     +A K+F+     D   +  +I GY + G 
Sbjct: 234 IHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGM 293

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK---YFDEMQADSVKPT--- 293
              A+ +F  + +  +  + +++ +IL AC+    ++ G++   Y  + + +   P    
Sbjct: 294 NKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSA 353

Query: 294 --EMHYAC-----------------------MVDLLGRAGLMEDAVKLIKNLPVEP---D 325
              M+  C                       ++    + G  E+A+ L + + +E    D
Sbjct: 354 IMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYD 413

Query: 326 ANIWGALLGACRIYGNVELGAWAAE-HLFMLKPQHCGYYILLS---NMYAEAGKWDEASK 381
                A L AC    N+    +  E H FM+K         +S   NMYA+ GK + A  
Sbjct: 414 CVTVSAALSAC---ANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARL 470

Query: 382 VRELMKSR 389
           V  LM+ +
Sbjct: 471 VFNLMQEK 478



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 1/183 (0%)

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G+  D  +F   I  C  L  ++ GK I  + +       +FVA+S++  Y  +G I+ A
Sbjct: 5   GVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDA 64

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
            + FD +  KD   WN +I GY   GE D+AI LF+ M       D V++  +L+     
Sbjct: 65  RRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSE 124

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
            +VE G++    +    +    +    +V +  +   + DA KL   +P + D  +W  +
Sbjct: 125 AMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMP-QIDLVVWNRM 183

Query: 333 LGA 335
           +G 
Sbjct: 184 IGG 186


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  320 bits (821), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 168/453 (37%), Positives = 265/453 (58%), Gaps = 40/453 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  RP +A  +F  + E+N+VSWN+++  + QN    +AL L  EM     FP+ VT
Sbjct: 195 MYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVT 254

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCG------CL---- 109
           L++V+ ACA     R G+++HA ++++  L  D+ L NAL DMYAKCG      C+    
Sbjct: 255 LSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSM 314

Query: 110 ---------------------NLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
                                  AQ VF+ +  ++ +++N+LI  Y+Q  +  E++ LF 
Sbjct: 315 PSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFV 374

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH------THLFVANSILD 201
           +++   +     ++   ++AC N+A ++ G++ H   +++         + +FV NS++D
Sbjct: 375 QLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVD 434

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y ++G ID   K+F+ +  +D+ SWN +I+GY   G    A++LFE M       D V+
Sbjct: 435 MYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVT 494

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
            I +L+AC H GLV++G+++F  M  D  + P+  HY CMVDLLGRAG +++A +LIK++
Sbjct: 495 MIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDM 554

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
           P EPD+ +W +LLGACR++ NVELG   A  LF L P++ G Y+LLSNMYAE GKW +  
Sbjct: 555 PTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVF 614

Query: 381 KVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +VR  MK R   K PGCSW++   ++  F+  D
Sbjct: 615 RVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARD 647



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 188/400 (47%), Gaps = 47/400 (11%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRL--ELKALQLVREMPIHNEFPNSV 59
           YA+  RP EA  LF  I + +  S+NA+VA  A++       AL+ +  M   +   N+ 
Sbjct: 93  YARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAY 152

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           +  + L ACA    LR G+++H  + R     D+ +  AL DMYAKC     A+ VF+ +
Sbjct: 153 SFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAM 212

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ VS+N LI  Y Q     E+L LF EM   G   D V+    +SACA LAA ++G+
Sbjct: 213 PERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGR 272

Query: 179 EIHGVTI-RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           ++H   + R  L   + + N+++D Y + GR   A  IFD +P +   S  +++ GY   
Sbjct: 273 QVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKS 332

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
             V+ A  +F  M E  V    +++  ++ A +  G  E+  + F +++ DS+ PT  HY
Sbjct: 333 ANVEDAQVVFSQMVEKNV----IAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPT--HY 386

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL----- 352
                                          +G +L AC     ++LG  A  H+     
Sbjct: 387 ------------------------------TYGNVLNACGNIAVLQLGQQAHVHVLKEGF 416

Query: 353 -FMLKPQHCGYY-ILLSNMYAEAGKWDEASKVRELMKSRE 390
            F   P+   +    L +MY + G  D+ +KV E M +R+
Sbjct: 417 RFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARD 456



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 156/345 (45%), Gaps = 44/345 (12%)

Query: 76  PG-KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGY 133
           PG +  H  +++  +  + FL N L   YA+ G L  A+ VF+ I  R+  SYN L+  Y
Sbjct: 34  PGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAY 93

Query: 134 SQTSDCSESLSLFSE---------------------------MRLLGMKH------DVVS 160
           ++     E+ +LF                             +R L   H      +  S
Sbjct: 94  ARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYS 153

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           F  A+SACA    ++ G+++HG+  R      + +  +++D Y +  R   A ++FD +P
Sbjct: 154 FASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMP 213

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            ++  SWN+LI  Y   G V  A+ LF  M   G   D V+  ++++AC+      +G++
Sbjct: 214 ERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQ 273

Query: 281 YFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
               M + D ++   +    +VD+  + G   +A  +  ++P     +    L G  +  
Sbjct: 274 VHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAK-S 332

Query: 340 GNVELGAWAAEHLF--MLKPQHCGYYILLSNMYAEAGKWDEASKV 382
            NVE     A+ +F  M++     + +L++  YA+ G+ +EA ++
Sbjct: 333 ANVE----DAQVVFSQMVEKNVIAWNVLIA-AYAQNGEEEEAIRL 372



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 17/189 (8%)

Query: 156 HDVVSFMGAISACANL----AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211
            ++V+ + A S  A+L     ++   +  HG  ++  +    F+ N+++  Y R GR+  
Sbjct: 11  QELVAHLRASSPLADLLRSAPSLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLRE 70

Query: 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271
           A ++FD +P++++ S+N L+  Y  LG  D A  LFEA+ +     D  SY A++ A + 
Sbjct: 71  ARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDP----DQCSYNAVVAALAR 126

Query: 272 GGLVEKGK--KYFDEMQADSVKPTEMHY-----ACMVDLLGRAGLMEDAVKLIKNLPVEP 324
            G    G   ++   M AD        +     AC  +   R G  E    L+   P   
Sbjct: 127 HGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTG--EQVHGLVARSPHAD 184

Query: 325 DANIWGALL 333
           D +I  AL+
Sbjct: 185 DVHIGTALV 193


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  320 bits (821), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 161/416 (38%), Positives = 252/416 (60%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+     +A  LF+ +  K+I+SW AM+   A++ L  +AL + ++M      PN VT
Sbjct: 490 MYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVT 549

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T++L AC+    L  G+ IH ++I  GL  D  + N L +MY+ CG +  A+ VF+ ++
Sbjct: 550 YTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMT 609

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V+YN +I GY+  +   E+L LF  ++  G+K D V+++  ++ACAN  +++  KE
Sbjct: 610 QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKE 669

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH + ++    +   + N+++  Y + G    A  +FD +  ++  SWN +I G    G 
Sbjct: 670 IHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGR 729

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
               + LFE M+ +G+  D V+++++L+ACSH GL+E+G++YF  M  D  + PT  HY 
Sbjct: 730 GQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYG 789

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAG +++   LIK +P + +  IWGALLGACRI+GNV +   AAE    L P 
Sbjct: 790 CMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPD 849

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +   Y+ LS+MYA AG WD A+K+R+LM+ R   K PG SW++  D++  FV  DR
Sbjct: 850 NAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDR 905



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 199/432 (46%), Gaps = 50/432 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     EA  +F  +  K++VSW  ++  +A       A ++ ++M      PN +T
Sbjct: 288 MYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRIT 347

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             NVL A +    L+ GK +H+ I+  G   DL +  AL  MYAKCG     + VF  + 
Sbjct: 348 YINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLV 407

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +++N +I G ++  +  E+  ++ +M+  GM  + ++++  ++AC N  A+  G+E
Sbjct: 408 NRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGRE 467

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   ++      + V N+++  Y R G I  A  +F+ +  KD  SW  +I G    G 
Sbjct: 468 IHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGL 527

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG---------- 278
              A+ +F+ M++ G+  + V+Y +IL ACS           H  ++E G          
Sbjct: 528 GAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANT 587

Query: 279 --------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE- 323
                         ++ FD M    +    + Y  M+       L ++A+KL   L  E 
Sbjct: 588 LVNMYSMCGSVKDARQVFDRMTQRDI----VAYNAMIGGYAAHNLGKEALKLFDRLQEEG 643

Query: 324 --PDANIWGALLGACRIYGNVELGAWAAE-HLFMLKPQHCGYYIL---LSNMYAEAGKWD 377
             PD   +  +L AC   G++E   WA E H  +LK  +     L   L + YA+ G + 
Sbjct: 644 LKPDKVTYINMLNACANSGSLE---WAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFS 700

Query: 378 EASKVRELMKSR 389
           +A  V + M  R
Sbjct: 701 DALLVFDKMMKR 712



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 170/338 (50%), Gaps = 4/338 (1%)

Query: 1   MYAKSSRPAEASYLFH--NIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY +     EA  +++  N  E+ + SWNAMV  + Q     +AL+L+REM  H      
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGR 244

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T   +L +C     L  G+EIH   ++  L FD+ + N + +MYAKCG ++ A+ VF+ 
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDK 304

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  +  VS+ I+I GY+       +  +F +M+  G+  + ++++  ++A +  AA+K G
Sbjct: 305 METKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWG 364

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K +H   +     + L V  +++  Y + G      ++F+ L  +D  +WNT+I G    
Sbjct: 365 KTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 424

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G  + A  ++  M+ +G+  + ++Y+ +L AC +   +  G++    +  D         
Sbjct: 425 GNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQ 484

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
             ++ +  R G ++DA +L+ N  V  D   W A++G 
Sbjct: 485 NALISMYARCGSIKDA-RLLFNKMVRKDIISWTAMIGG 521



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 157/332 (47%), Gaps = 6/332 (1%)

Query: 41  KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100
           +A+ +V+ +       NS     +L  C     L  G+E+H  II+     D +  NAL 
Sbjct: 124 RAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALI 183

Query: 101 DMYAKCGCLNLAQNVFNI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157
           +MY +CG +  A+ V+N    + R   S+N ++VGY Q     E+L L  EM+  G+   
Sbjct: 184 NMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALG 243

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
             + M  +S+C + +A++ G+EIH   ++  L   + VAN IL+ Y + G I  A ++FD
Sbjct: 244 RATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFD 303

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            +  K   SW  +I GY   G  + A  +F+ M+++GV  + ++YI +L A S    ++ 
Sbjct: 304 KMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKW 363

Query: 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
           GK     +     +        +V +  + G  +D  ++ + L V  D   W  ++G   
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGGLA 422

Query: 338 IYGNVELGAWAAEHLFM--LKPQHCGYYILLS 367
             GN E  +     +    + P    Y ILL+
Sbjct: 423 EGGNWEEASEIYHQMQREGMMPNKITYVILLN 454


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  320 bits (821), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 158/411 (38%), Positives = 255/411 (62%), Gaps = 2/411 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  + +K +VSWN+M+  + QN    KA+ +  +M      P  VT
Sbjct: 292 MYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVT 351

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +   L ACA    L  GK +H  + +  L  D+ + N+L  MY+KC  +++A ++FN ++
Sbjct: 352 IMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLN 411

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS+N +I+GY+Q    SE+L+ FSEM+ LGMK D  + +  I A A L+  +  K 
Sbjct: 412 GRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKW 471

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG+ IR  L  ++FV  +++D Y++ G I +A K+FD +  +   +WN +I GYG  G 
Sbjct: 472 IHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGL 531

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++LF+ M++  V  + ++Y+++++ACSH GLV++G ++F  M+ D  ++P+  HY 
Sbjct: 532 GRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYG 591

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            MVDLLGRAG +++A   I+N+P+ P   ++GA  GAC+I+ N+E+G  AA+ LF L P 
Sbjct: 592 AMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPD 651

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
             GY++LL+N+YA   KW + ++VR+ M+ +  KK PGCS V+ R+EV  F
Sbjct: 652 EGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSF 702



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 152/293 (51%), Gaps = 4/293 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +++K     EA+ +F  I +K    ++ M+  +A+N     AL  +  M   +  P    
Sbjct: 90  LFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYN 149

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T +L  C     L+ GKEIH ++I      ++F    + +MYAKC  ++ A  +F+ + 
Sbjct: 150 FTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMP 209

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N +I G+SQ     ++L L   M+  G + D ++ +  + A A++  +  GK 
Sbjct: 210 ERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKS 269

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  IR      + ++ ++ D Y++ G ++ A  IFD +  K   SWN+++ GY   GE
Sbjct: 270 IHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGE 329

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK---KYFDEMQADS 289
            + AI +FE M E+G+    V+ +  L AC+  G +E+GK   K+ D++   S
Sbjct: 330 PEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGS 382



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 74/161 (45%), Gaps = 4/161 (2%)

Query: 178 KEIHGV---TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           KE+H +    I+  L+        ++  +++ G I+ A ++F+ +  K  A ++T++ GY
Sbjct: 63  KELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGY 122

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
                ++TA+     MR D V     ++  +L  C     +++GK+   ++  +S     
Sbjct: 123 AKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANV 182

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                +V++  +   ++DA K+   +P E D   W  ++  
Sbjct: 183 FAMTGVVNMYAKCRQIDDAYKMFDRMP-ERDLVSWNTIIAG 222


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  320 bits (821), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 165/419 (39%), Positives = 250/419 (59%), Gaps = 5/419 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA      EA  LF  I  +++VSWNAM++ +AQ+    +A+    EM      PN  T+
Sbjct: 204 YASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTM 263

Query: 62  TNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            +VL ACA+ G  L+ G  + + I  +GL  ++ L N L DMY KCG L  A N+F  I 
Sbjct: 264 LSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQ 323

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N++I GY+  S   E+L LF  M    +  + V+F+  + ACANL A+  GK 
Sbjct: 324 DKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKW 383

Query: 180 IHGVTIR--KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           +H    +  K +   + +  S++D Y + G + +A +IFDC+  K  A+WN +I G+ M 
Sbjct: 384 VHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMH 443

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G  DTA+ LF  M  +G   D ++++ +LTAC H GL+  G++YF  M  D  V P   H
Sbjct: 444 GHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPH 503

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y CM+DL GRAGL ++A  L+KN+ ++PD  IW +LLGACRI+  +EL    A+HLF L+
Sbjct: 504 YGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELE 563

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           P++   Y+LLSN+YA AG+W++ +K+R  +     KK PGCS ++    V +F+V D++
Sbjct: 564 PENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKV 622



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 174/366 (47%), Gaps = 38/366 (10%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           LF  I   N V WN M+   + +     AL+    M      PN  T  ++  +C +   
Sbjct: 84  LFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRG 143

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
              GK++HA +++ GL  + F+  +L +MYA+ G L  A+ VF+                
Sbjct: 144 AHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITG 203

Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
                           I  RD VS+N +I GY+Q+    E+++ F EMR   +  +V + 
Sbjct: 204 YASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTM 263

Query: 162 MGAISACANL-AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           +  +SACA   ++++ G  +      + L +++ + N ++D Y + G ++ A+ +F+ + 
Sbjct: 264 LSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQ 323

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK- 279
            K+  SWN +I GY  +     A+ LF  M +  +  + V++++IL AC++ G ++ GK 
Sbjct: 324 DKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKW 383

Query: 280 --KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
              Y D+    S+K T   +  ++D+  + G +  A ++   +  +  A  W A++    
Sbjct: 384 VHAYVDK-NMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLAT-WNAMISGFA 441

Query: 338 IYGNVE 343
           ++G+ +
Sbjct: 442 MHGHTD 447



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 136/272 (50%), Gaps = 9/272 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EAS LF  I +KN+VSWN M+  +       +AL L R M   N  PN VT
Sbjct: 305 MYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVT 364

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR--KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
             ++LPACA    L  GK +HA + +  K +   + L  +L DMYAKCG L +A+ +F+ 
Sbjct: 365 FLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDC 424

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           ++ +   ++N +I G++       +L LFS M   G   D ++F+G ++AC +   +  G
Sbjct: 425 MNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLG 484

Query: 178 KEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYG 235
           +      I+ + +   L     ++D + R+G  D A  +   + +K D A W +L+    
Sbjct: 485 RRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACR 544

Query: 236 MLGEVD----TAINLFEAMREDGVGYDPVSYI 263
           +   ++     A +LFE   E+   Y  +S I
Sbjct: 545 IHRRIELAESVAKHLFELEPENPSAYVLLSNI 576



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 164/394 (41%), Gaps = 84/394 (21%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC--GCLNLAQNVF-NISFRDEVSYNILI 130
           L+  K+IH++II+ GL+   F  + L +  A    G L+ A ++F  I   + V +N +I
Sbjct: 41  LQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMI 100

Query: 131 VGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH 190
            G S +     +L  +  M   G + +  +F     +C  +    +GK++H   ++  L 
Sbjct: 101 RGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLE 160

Query: 191 THLFVANSILDFYTRSGR-------------------------------IDLANKIFDCL 219
            + FV  S+++ Y ++G                                +D A ++FD +
Sbjct: 161 HNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEI 220

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL----- 274
           PV+D  SWN +I GY   G V+ A+  FE MR   V  +  + +++L+AC+  G      
Sbjct: 221 PVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLG 280

Query: 275 -------------------------------VEKGKKYFDEMQADSVKPTEMHYACMVDL 303
                                          +E+    F+++Q  +V    + +  M+  
Sbjct: 281 NWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNV----VSWNVMIGG 336

Query: 304 LGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK---- 356
                  ++A+ L + +    ++P+   + ++L AC   G ++LG W   H ++ K    
Sbjct: 337 YTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWV--HAYVDKNMKS 394

Query: 357 -PQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
                  +  L +MYA+ G    A ++ + M ++
Sbjct: 395 MKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTK 428



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 15/238 (6%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS--GRIDLANKIFDCLPVK 222
           +S C  L  +KQ   IH   I+  LH   F  + +++F   S  G +  A  +F  +   
Sbjct: 35  LSNCKTLQTLKQ---IHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNP 91

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282
           +   WN +I G         A+  +  M   G   +  ++ +I  +C+      +GK+  
Sbjct: 92  NHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVH 151

Query: 283 DEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
             +    ++     +  ++++  + G + +A +L+ +     DA  + AL+      G +
Sbjct: 152 AHVLKLGLEHNAFVHTSLINMYAQNGELVNA-RLVFDKSSMRDAVSFTALITGYASKGFL 210

Query: 343 ELGAWAAEHLFMLKPQH--CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCS 398
           +     A  LF   P      +  ++S  YA++G+ +EA    E M  R AK  P  S
Sbjct: 211 D----EARELFDEIPVRDVVSWNAMISG-YAQSGRVEEAMAFFEEM--RRAKVTPNVS 261


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  320 bits (820), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 167/418 (39%), Positives = 255/418 (61%), Gaps = 3/418 (0%)

Query: 1   MYAKSSRPAEA-SYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MY K     EA   +F  +  K + SWNA++  +AQN    KAL L  +M      P+  
Sbjct: 252 MYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWF 311

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T+ ++L AC+R   L  G+EIH   +R GL  D F+  +L  +Y  CG    AQ +F+ +
Sbjct: 312 TIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGM 371

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R  VS+N++I GYSQ     E+++LF +M   G++   ++ M    AC+ L+A++ GK
Sbjct: 372 EHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGK 431

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+H   ++ HL   +FV++SI+D Y + G I L+ +IFD L  KD ASWN +I GYG+ G
Sbjct: 432 ELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHG 491

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               A+ LFE M   G+  D  ++  IL ACSH GLVE G +YF++M    +++P   HY
Sbjct: 492 RGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHY 551

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C+VD+LGRAG ++DA++LI+ +P +PD+ IW +LL +CRI+GN+ LG   A  L  L+P
Sbjct: 552 TCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEP 611

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           +    Y+L+SN++A +GKWD+  +VR  MK    +K+ GCSW++   +V +F++ D M
Sbjct: 612 EKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEM 669



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 199/430 (46%), Gaps = 49/430 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           MY+    P+++  +F  +  KN+  WNA+V+ + +N L   A+ +  E+  +    P++ 
Sbjct: 150 MYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNF 209

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA-QNVFNI 118
           TL  V+ ACA    L  G+ IH    +  L  D+F+ NAL  MY KCG +  A + VF++
Sbjct: 210 TLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDL 269

Query: 119 SFRDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
                V S+N L+ GY+Q SD  ++L L+ +M   G+  D  +    + AC+ + ++  G
Sbjct: 270 MDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYG 329

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           +EIHG  +R  L    F+  S+L  Y   G+   A  +FD +  +   SWN +I GY   
Sbjct: 330 EEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQN 389

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSH-------------------------- 271
           G  D AINLF  M  DG+    ++ + +  ACS                           
Sbjct: 390 GLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVS 449

Query: 272 ---------GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN--- 319
                    GG +   ++ FD ++   V      +  ++   G  G  ++A++L +    
Sbjct: 450 SSIIDMYAKGGCIGLSQRIFDRLREKDVAS----WNVIIAGYGIHGRGKEALELFEKMLR 505

Query: 320 LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML---KPQHCGYYILLSNMYAEAGKW 376
           L ++PD   +  +L AC   G VE G      +  L   +P+   +Y  + +M   AG+ 
Sbjct: 506 LGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPK-LEHYTCVVDMLGRAGRI 564

Query: 377 DEASKVRELM 386
           D+A ++ E M
Sbjct: 565 DDALRLIEEM 574



 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 6/173 (3%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS-ILDFYTRSGRIDLANKIFDCLPVKD 223
           + AC     I+ G+ +H +        + FV N+ I+  Y+  G    +  +FD L  K+
Sbjct: 112 LQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKN 171

Query: 224 SASWNTLILGYGMLGEVDTAINLF-EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282
              WN ++  Y      + A+++F E +       D  +   ++ AC+  GL++ G    
Sbjct: 172 LFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA--GLLDLGLGQI 229

Query: 283 DEMQADSVKPTEMHYA--CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
               A  +      +    ++ + G+ GL+E+AVK + +L      + W ALL
Sbjct: 230 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALL 282


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  320 bits (820), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 166/441 (37%), Positives = 259/441 (58%), Gaps = 22/441 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNI----VSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           Y++S     A  LF N+ ++NI    V+W A++A ++Q     +AL L R+M      PN
Sbjct: 341 YSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPN 400

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRK----------GLNFDLFLTNALTDMYAKCG 107
            VT+ +VL ACA       G EIHA  ++           G + DL + NAL DMY+KC 
Sbjct: 401 CVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 460

Query: 108 CLNLAQNVFN---ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFM 162
               A+++F+   +  R+ V++ ++I G++Q  D +++L LF EM     G+  +  +  
Sbjct: 461 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 520

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLH--THLFVANSILDFYTRSGRIDLANKIFDCLP 220
             + ACA+LAAI+ GK+IH   +R H +  +  FVAN ++D Y++ G +D A  +FD + 
Sbjct: 521 CILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS 580

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            K + SW +++ GYGM G    A+++F+ MR+ G   D ++++ +L ACSH G+V++G  
Sbjct: 581 QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLS 640

Query: 281 YFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
           YFD M AD  + P   HYAC +DLL R+G ++ A + +K++P+EP A +W ALL ACR++
Sbjct: 641 YFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVH 700

Query: 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSW 399
            NVEL   A   L  +  ++ G Y L+SN+YA AG+W + +++R LMK    KK PGCSW
Sbjct: 701 SNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSW 760

Query: 400 VQTRDEVQDFVVNDRMKTFTP 420
           VQ +     F V DR    +P
Sbjct: 761 VQGQKGTASFFVGDRSHPLSP 781



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 143/273 (52%), Gaps = 12/273 (4%)

Query: 24  VSWNAMV-ANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82
           V WN ++  +  Q RL+  A+ +   M      P+  TL +VL AC      R G   H 
Sbjct: 121 VWWNLLIREHIKQGRLD-SAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHG 179

Query: 83  RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR---DEVSYNILIVGYSQTSD 138
            I   G   ++F+ NAL  MY++CG L  A  +F+ I+ R   D +S+N ++  + ++S+
Sbjct: 180 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 239

Query: 139 CSESLSLFSEMRLL------GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
              +L LFS+M L+        + D++S +  + AC +L A+ Q KE+HG  IR      
Sbjct: 240 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPD 299

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +FV N+++D Y + G ++ A K+F+ +  KD  SWN ++ GY   G  + A  LF+ MR+
Sbjct: 300 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK 359

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           + +  D V++ A++   S  G   +    F +M
Sbjct: 360 ENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 392



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 112/259 (43%), Gaps = 11/259 (4%)

Query: 95  LTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
           L   +   Y  CG  + A  V   ++    V +N+LI  + +      ++++   M   G
Sbjct: 91  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 150

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
            + D  +    + AC  L + + G   HG+       +++F+ N+++  Y+R G ++ A+
Sbjct: 151 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 210

Query: 214 KIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAM------REDGVGYDPVSYIA 264
            IFD +    + D  SWN+++  +       TA++LF  M      +      D +S + 
Sbjct: 211 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 270

Query: 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           IL AC     V + K+       +   P       ++D   + GLME+AVK+   +  + 
Sbjct: 271 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK- 329

Query: 325 DANIWGALLGACRIYGNVE 343
           D   W A++      GN E
Sbjct: 330 DVVSWNAMVAGYSQSGNFE 348



 Score = 38.5 bits (88), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A ++F ++++K+ +SW +M+  +  +    +AL +  +M      P+ +T
Sbjct: 562 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 621

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF 91
              VL AC+           H  ++ +GL++
Sbjct: 622 FLVVLYACS-----------HCGMVDQGLSY 641


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  320 bits (820), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 172/455 (37%), Positives = 256/455 (56%), Gaps = 40/455 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  RP EA  +F  + E+NIVSWN+++  + QN    +AL L   M      P+ VT
Sbjct: 191 MYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVT 250

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           L +V+ ACA     R G+++H R+++      D+ L NAL DMYAKCG    A+ VF+ +
Sbjct: 251 LASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRM 310

Query: 119 SFRDEVS-------------------------------YNILIVGYSQTSDCSESLSLFS 147
           + R  VS                               +N+LI  Y+  S+  E+L LF 
Sbjct: 311 AIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFV 370

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH------GVTIRKHLHTHLFVANSILD 201
            ++   +     ++   ++ACANLA ++ G++ H      G        + +FV NS++D
Sbjct: 371 RLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVD 430

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y ++G I    K+F+ +  +D+ SWN +I+GY   G    A+ LFE M       D V+
Sbjct: 431 MYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVT 490

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
            I +L+AC H GLV++G++YF  M  D  + PT  HY CM+DLLGRAG +++  +LI+N+
Sbjct: 491 MIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENM 550

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
           P+EPDA +W +LLGACR++ N+++G WAA  LF L P + G Y+LLSNMYAE GKW +  
Sbjct: 551 PMEPDAVLWASLLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVF 610

Query: 381 KVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           +VR  MK R   K PGCSW++   +V  F+  D +
Sbjct: 611 RVRRSMKHRGVSKQPGCSWIEIGRKVNVFLARDNI 645



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 183/397 (46%), Gaps = 45/397 (11%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
           A+  R  +A  LF  I + +  S+NA+VA  AQ+     AL+ +  M   +   N+ +  
Sbjct: 92  ARLGRADDALALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFA 151

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           + L ACA     R G+++HA + +     D+++  AL DMYAKC     AQ VF+ +  R
Sbjct: 152 SALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPER 211

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + VS+N LI  Y Q     E+L+LF  M   G   D V+    +SACA LAA ++G+++H
Sbjct: 212 NIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVH 271

Query: 182 GVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
              ++       + + N+++D Y + GR   A  +FD + ++   S  ++I GY     V
Sbjct: 272 TRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANV 331

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A  +F  M E  V    V++  ++   +H    E+  + F  ++ +SV PT  HY   
Sbjct: 332 GDAQAVFLQMVEKNV----VAWNVLIATYAHNSEEEEALRLFVRLKRESVWPT--HY--- 382

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL------FM 354
                                       +G +L AC    N++LG  A  H+      F 
Sbjct: 383 ---------------------------TYGNVLNACANLANLQLGQQAHVHVLKEGFRFD 415

Query: 355 LKPQHCGYY-ILLSNMYAEAGKWDEASKVRELMKSRE 390
             P+   +    L +MY + G   + +KV E M +R+
Sbjct: 416 SGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARD 452



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 150/324 (46%), Gaps = 37/324 (11%)

Query: 92  DLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSE-- 148
           + FL N L   YA+ G L+ A+ VF+ +  R+  SYN L+   ++     ++L+LF    
Sbjct: 49  ETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIP 108

Query: 149 -----------------------MRLLGMKH------DVVSFMGAISACANLAAIKQGKE 179
                                  +R L   H      +  SF  A+SACA+  A + G++
Sbjct: 109 DPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQ 168

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H +  +    + +++  +++D Y +  R + A K+FD +P ++  SWN+LI  Y   G 
Sbjct: 169 VHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGP 228

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
           VD A+ LF  M +DG   D V+  ++++AC+      +G++    M ++D  +   +   
Sbjct: 229 VDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNN 288

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            +VD+  + G   +A  +   + +    +    + G  +   +  +G   A  L M++  
Sbjct: 289 ALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAK---SANVGDAQAVFLQMVEKN 345

Query: 359 HCGYYILLSNMYAEAGKWDEASKV 382
              + +L++  YA   + +EA ++
Sbjct: 346 VVAWNVLIAT-YAHNSEEEEALRL 368



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 77/199 (38%), Gaps = 41/199 (20%)

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
           F+ N++L  Y R G +  A ++FD +P +++ S+N L+     LG  D A+ LF A+ + 
Sbjct: 51  FLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDP 110

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
               D  SY A++ A +  G      ++   M AD        +A               
Sbjct: 111 ----DQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFA--------------- 151

Query: 314 VKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-CGYYI--LLSNMY 370
                            + L AC        G     H  + K  H    YI   L +MY
Sbjct: 152 -----------------SALSACASEKASRTGEQV--HALVTKSSHGSDVYIGTALVDMY 192

Query: 371 AEAGKWDEASKVRELMKSR 389
           A+  + +EA KV + M  R
Sbjct: 193 AKCERPEEAQKVFDAMPER 211


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  320 bits (820), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 163/418 (38%), Positives = 254/418 (60%), Gaps = 8/418 (1%)

Query: 5   SSRPAEASYL------FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           S +  E+ YL      F  + +++IVSWN +++  AQN +   AL +VREM   +  P+S
Sbjct: 177 SKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDS 236

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            TL++VLP  A    L  GKEIH   IR G + D+F+ ++L DMYAKC  ++ +  VF  
Sbjct: 237 FTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYM 296

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +   D +S+N +I G  Q     E L  F +M +  +K + VSF   + ACA+L  +  G
Sbjct: 297 LPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLG 356

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K++HG  IR     ++F+A++++D Y + G I  A  IFD + + D  SW  +I+GY + 
Sbjct: 357 KQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALH 416

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G    AI+LF+ M  +GV  + V+++A+LTACSH GLV++  KYF+ M  D  + P   H
Sbjct: 417 GHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEH 476

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YA + DLLGR G +E+A + I ++ +EP  ++W  LL ACR++ N+EL    ++ LF + 
Sbjct: 477 YAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVD 536

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           PQ+ G Y+LLSN+Y+ AG+W +A K+R  M+ +  KK P CSW++ +++V  FV  D+
Sbjct: 537 PQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDK 594



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 184/409 (44%), Gaps = 43/409 (10%)

Query: 24  VSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHAR 83
           ++W +++  +  + L L +L    +M    ++P+     +VL +C     LR G+ +H  
Sbjct: 72  LAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGC 131

Query: 84  IIRKGLNFDLFLTNALTDMYAKCGCL---NLAQNVFN----------------------- 117
           IIR G+ FDL+  NAL +MY+K   L   N  + VF+                       
Sbjct: 132 IIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRK 191

Query: 118 ----ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
               +  RD VS+N +I G +Q     ++L +  EM    ++ D  +    +   A    
Sbjct: 192 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVN 251

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           + +GKEIHG  IR      +F+ +S++D Y +  R+D + ++F  LP  D  SWN++I G
Sbjct: 252 LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAG 311

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
               G  D  +  F+ M    +  + VS+ +I+ AC+H   +  GK+    +        
Sbjct: 312 CVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGN 371

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
               + +VD+  + G +  A  +   + +  D   W A++    ++G+    A+ A  LF
Sbjct: 372 VFIASALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALHGH----AYDAISLF 426

Query: 354 M------LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPG 396
                  +KP +  +  +L+   + AG  DEA K    M +++ +  PG
Sbjct: 427 KRMEVEGVKPNYVAFMAVLTAC-SHAGLVDEAWKYFNSM-TQDYRIIPG 473



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 143/262 (54%), Gaps = 7/262 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK +R  ++  +F+ + + + +SWN+++A   QN +  + L+  ++M I    PN V+
Sbjct: 280 MYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVS 339

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++++PACA    L  GK++H  IIR   + ++F+ +AL DMYAKCG +  A+ +F+ + 
Sbjct: 340 FSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKME 399

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
             D VS+  +I+GY+      +++SLF  M + G+K + V+FM  ++AC++   + +  K
Sbjct: 400 LYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWK 459

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGML 237
             + +T    +   L    ++ D   R GR++ A +    + ++ + S W+TL+      
Sbjct: 460 YFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAA---- 515

Query: 238 GEVDTAINLFEAMREDGVGYDP 259
             V   I L E + +     DP
Sbjct: 516 CRVHKNIELAEKVSKKLFTVDP 537


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  320 bits (820), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 166/441 (37%), Positives = 259/441 (58%), Gaps = 22/441 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNI----VSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           Y++S     A  LF N+ ++NI    V+W A++A ++Q     +AL L R+M      PN
Sbjct: 348 YSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPN 407

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRK----------GLNFDLFLTNALTDMYAKCG 107
            VT+ +VL ACA       G EIHA  ++           G + DL + NAL DMY+KC 
Sbjct: 408 CVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 467

Query: 108 CLNLAQNVFN---ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFM 162
               A+++F+   +  R+ V++ ++I G++Q  D +++L LF EM     G+  +  +  
Sbjct: 468 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 527

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLH--THLFVANSILDFYTRSGRIDLANKIFDCLP 220
             + ACA+LAAI+ GK+IH   +R H +  +  FVAN ++D Y++ G +D A  +FD + 
Sbjct: 528 CILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS 587

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            K + SW +++ GYGM G    A+++F+ MR+ G   D ++++ +L ACSH G+V++G  
Sbjct: 588 QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLS 647

Query: 281 YFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
           YFD M AD  + P   HYAC +DLL R+G ++ A + +K++P+EP A +W ALL ACR++
Sbjct: 648 YFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVH 707

Query: 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSW 399
            NVEL   A   L  +  ++ G Y L+SN+YA AG+W + +++R LMK    KK PGCSW
Sbjct: 708 SNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSW 767

Query: 400 VQTRDEVQDFVVNDRMKTFTP 420
           VQ +     F V DR    +P
Sbjct: 768 VQGQKGTASFFVGDRSHPLSP 788



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 143/273 (52%), Gaps = 12/273 (4%)

Query: 24  VSWNAMV-ANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82
           V WN ++  +  Q RL+  A+ +   M      P+  TL +VL AC      R G   H 
Sbjct: 128 VWWNLLIREHIKQGRLD-SAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHG 186

Query: 83  RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR---DEVSYNILIVGYSQTSD 138
            I   G   ++F+ NAL  MY++CG L  A  +F+ I+ R   D +S+N ++  + ++S+
Sbjct: 187 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 246

Query: 139 CSESLSLFSEMRLL------GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
              +L LFS+M L+        + D++S +  + AC +L A+ Q KE+HG  IR      
Sbjct: 247 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPD 306

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +FV N+++D Y + G ++ A K+F+ +  KD  SWN ++ GY   G  + A  LF+ MR+
Sbjct: 307 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK 366

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           + +  D V++ A++   S  G   +    F +M
Sbjct: 367 ENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 399



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 112/259 (43%), Gaps = 11/259 (4%)

Query: 95  LTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
           L   +   Y  CG  + A  V   ++    V +N+LI  + +      ++++   M   G
Sbjct: 98  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 157

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
            + D  +    + AC  L + + G   HG+       +++F+ N+++  Y+R G ++ A+
Sbjct: 158 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 217

Query: 214 KIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAM------REDGVGYDPVSYIA 264
            IFD +    + D  SWN+++  +       TA++LF  M      +      D +S + 
Sbjct: 218 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 277

Query: 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           IL AC     V + K+       +   P       ++D   + GLME+AVK+   +  + 
Sbjct: 278 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK- 336

Query: 325 DANIWGALLGACRIYGNVE 343
           D   W A++      GN E
Sbjct: 337 DVVSWNAMVAGYSQSGNFE 355



 Score = 38.1 bits (87), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A ++F ++++K+ +SW +M+  +  +    +AL +  +M      P+ +T
Sbjct: 569 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 628

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF 91
              VL AC+           H  ++ +GL++
Sbjct: 629 FLVVLYACS-----------HCGMVDQGLSY 648


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 165/412 (40%), Positives = 249/412 (60%), Gaps = 23/412 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  + E+N+VSW +M+A + ++     A+ L+++M       + V 
Sbjct: 157 MYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVA 216

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T++L ACAR   L  GK++H  I    +  +LF+ NAL DMYAKCG +  A +VF+ + 
Sbjct: 217 ITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMV 276

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+N ++                       +K D  +    + ACA+L+A+++GKE
Sbjct: 277 VKDIISWNTMVGE---------------------LKPDSRTMACILPACASLSALERGKE 315

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R    +   VAN+++D Y + G + LA  +FD +P KD  SW  +I GYGM G 
Sbjct: 316 IHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGY 375

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + AI  F  MR+ G+  D VS+I+IL ACSH GL+E+G ++F  M+ D +++P   HYA
Sbjct: 376 GNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYA 435

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLL R G +  A K I+ LP+ PDA IWGALL  CRIY ++EL    AE +F L+P+
Sbjct: 436 CMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPE 495

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
           + GYY+LL+N+YAEA KW+E  ++RE +  +  +KNPGCSW++ +  V  FV
Sbjct: 496 NTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFV 547



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 153/357 (42%), Gaps = 62/357 (17%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA      E   +F  + +KN+  WN MV+ +A+                  +F  S+ L
Sbjct: 6   YATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK----------------IGDFKESICL 49

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR 121
             ++                   + KG+      + + ++++ K            +  R
Sbjct: 50  FKIM-------------------VEKGIEGKR--SESASELFDK------------LCDR 76

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           D +S+N +I GY         L ++ +M  LG+  D+ + +  +  CA    +  GK +H
Sbjct: 77  DVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVH 136

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
            + I+      +  +N++LD Y++ G +D A ++F+ +  ++  SW ++I GY   G  D
Sbjct: 137 SLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSD 196

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            AI L + M ++GV  D V+  +IL AC+  G ++ GK   D ++A+++         ++
Sbjct: 197 GAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALM 256

Query: 302 DLLGRAGLMEDAVKLIKNLPV-------------EPDANIWGALLGACRIYGNVELG 345
           D+  + G ME A  +   + V             +PD+     +L AC     +E G
Sbjct: 257 DMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERG 313



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 86/221 (38%), Gaps = 37/221 (16%)

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
           ++ FY   G +    ++FD +  K+   WN ++  Y  +G+   +I LF+ M E G+   
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI--- 58

Query: 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
                        G   E   + FD++    V    + +  M+      GL E  + + K
Sbjct: 59  ------------EGKRSESASELFDKLCDRDV----ISWNSMISGYVSNGLTERGLGIYK 102

Query: 319 N---LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP---QHCGYYILLSNMYAE 372
               L ++ D     ++L  C   G + LG   A H   +K    +   +   L +MY++
Sbjct: 103 QMMYLGIDVDLATIISVLVGCAKSGTLSLG--KAVHSLAIKSSFERRINFSNTLLDMYSK 160

Query: 373 AGKWDEASKVRELMKSREAKKNPGCSWVQ-----TRDEVQD 408
            G  D A +V E M  R        SW       TRD   D
Sbjct: 161 CGDLDGALRVFEKMGERNV-----VSWTSMIAGYTRDGWSD 196


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 169/449 (37%), Positives = 260/449 (57%), Gaps = 37/449 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K++    A    +  ++K  V+WNAM++ +A   L L+A ++ R+M +     +  T 
Sbjct: 233 YVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTF 292

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLN----FDLFLTNALTDMYAKCGCLNLAQNVFN 117
           T+V+  CA     R GKE+HA  ++   N      + + NAL   Y KCG +++AQ +FN
Sbjct: 293 TSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFN 352

Query: 118 -ISFRDEVSYNILIVGY-------------------------------SQTSDCSESLSL 145
            +  RD VS+NI++ GY                               +Q     E+L  
Sbjct: 353 KMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKF 412

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           F+ M+L G +    +F GAI +C+ L ++K G+++H   +R    + L   N+++  Y R
Sbjct: 413 FNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYAR 472

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
            G +D A+ +F  +P  D+ SWN +I   G  G+   AI LFE M ++G+  D +S++ +
Sbjct: 473 CGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTV 532

Query: 266 LTACSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           ++ACSH GLV++G+KYFD M     V P E HYA ++DLL RAG   +A ++++++P EP
Sbjct: 533 ISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEP 592

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
            A IW ALL  CRI+GN++LG  AAE LF LKPQH G Y+LLSNMYA AG+W++ +KVR+
Sbjct: 593 GAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRK 652

Query: 385 LMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           LM+ R  KK PGCSW++  ++V  F+V D
Sbjct: 653 LMRDRGVKKEPGCSWIEVENKVHSFLVGD 681



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 113/264 (42%), Gaps = 32/264 (12%)

Query: 70  RGHFLRPGKEIHARIIRKGLNF-----------DLFLTNALTDMYAKCGCLNLAQNVFN- 117
           RGH L    +I+++     LN+           D+     L   Y+  G L L++ +F+ 
Sbjct: 47  RGHILNRLIDIYSK--SSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSD 104

Query: 118 --ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI- 174
             +  RD V YN +I  YS   D   ++ LF +M+    + D  +F   + A A +A   
Sbjct: 105 TPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKE 164

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL---------ANKIFDCLPVKDSA 225
           K  +++H   ++        V N+++  Y +               A K+FD +P +D  
Sbjct: 165 KHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDEL 224

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMRED-GVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
           SW T+I GY    ++D A        +  GV ++     A+++  +H GL  +  + F +
Sbjct: 225 SWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWN-----AMISGYAHRGLYLEAFEMFRK 279

Query: 285 MQADSVKPTEMHYACMVDLLGRAG 308
           M    ++  E  +  ++ +   AG
Sbjct: 280 MIMSKIQLDEFTFTSVISVCANAG 303



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 13/148 (8%)

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            + +H   I         + N ++D Y++S +++ A  +FD +P  D  +  TLI  Y  
Sbjct: 32  ARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSA 91

Query: 237 LGEVDTAINLFE----AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
            G++  +  +F      MR      D V Y A++TA SH        + F +MQ D+ +P
Sbjct: 92  AGDLKLSRKIFSDTPLGMR------DSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRP 145

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNL 320
               +     +LG   L+ +  K  + L
Sbjct: 146 DNYTF---TSVLGALALVAEKEKHCQQL 170



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+      A  LF N+   + +SWNAM+A   Q+    +A++L  EM      P+ ++
Sbjct: 469 MYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRIS 528

Query: 61  LTNVLPACARGHFLRPGKE 79
              V+ AC+    ++ G++
Sbjct: 529 FLTVISACSHAGLVKEGRK 547


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 156/416 (37%), Positives = 260/416 (62%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A  +F      ++V  + M++ +  NR+   A+++ R +      PN+V 
Sbjct: 393 IYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVM 452

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + + LPACA    +R G+E+H  +++       ++ +AL DMY+KCG L+L+  +F+ +S
Sbjct: 453 VASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMS 512

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +DEV++N +I  ++Q  +  E+L LF +M + G+K++ V+    +SACA L AI  GKE
Sbjct: 513 AKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKE 572

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG+ I+  +   LF  ++++D Y + G ++LA ++F+ +P K+  SWN++I  YG  G 
Sbjct: 573 IHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGL 632

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
           V  +++L   M+E+G   D V+++A+++AC+H G V++G + F  M  +  ++P   H +
Sbjct: 633 VKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLS 692

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDL  RAG ++ A++ I ++P +PDA IWGALL ACR++ NVEL   A++ LF L P 
Sbjct: 693 CMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPH 752

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +CGYY+L+SN+ A AG+WD  SK+R LMK ++ +K PG SWV   +    FV  D+
Sbjct: 753 NCGYYVLMSNINAVAGRWDGVSKMRRLMKDKKVQKIPGYSWVDVNNTSHLFVAADK 808



 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/391 (30%), Positives = 212/391 (54%), Gaps = 9/391 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     EA  LF  +   ++V+WN M++   QN L   AL+L  +M      P+SVT
Sbjct: 292 MYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVT 351

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L ++LPA    +  + GKEIH  I+R   + D+FL +AL D+Y KC  + +AQNVF+ + 
Sbjct: 352 LASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATK 411

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V  + +I GY        ++ +F  +  LG+K + V     + ACA++AA++ G+E
Sbjct: 412 SIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQE 471

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  ++       +V ++++D Y++ GR+DL++ +F  +  KD  +WN++I  +   GE
Sbjct: 472 LHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGE 531

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A++LF  M  +GV Y+ V+  +IL+AC+    +  GK+    +    ++      + 
Sbjct: 532 PEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESA 591

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG----NVELGAWAAEHLFML 355
           ++D+ G+ G +E A+++ +++P E +   W +++ A   +G    +V+L     E  F  
Sbjct: 592 LIDMYGKCGNLELALRVFEHMP-EKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGF-- 648

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
           K  H  +  L+S   A AG+  E  ++   M
Sbjct: 649 KADHVTFLALISAC-AHAGQVQEGLRLFRCM 678



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 143/286 (50%), Gaps = 6/286 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNI---VSWNAMVANFAQNRLELKALQLVREMPIH--NEF 55
           MY  + R  +A  +F ++        + WN ++  F        A+    +M  H  +  
Sbjct: 85  MYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPR 144

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P+  TL  V+ +CA    L  G+ +H      GL+ D+++ +AL  MYA  G L+ A+ V
Sbjct: 145 PDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREV 204

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ +  RD V +N+++ GY +  D + ++ LF  MR  G   +  +    +S CA  A +
Sbjct: 205 FDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADL 264

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G ++H + ++  L   + VAN+++  Y +   ++ A ++F  +P  D  +WN +I G 
Sbjct: 265 LSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGC 324

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
              G VD A+ LF  M++ G+  D V+  ++L A +     ++GK+
Sbjct: 325 VQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKE 370


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 163/387 (42%), Positives = 246/387 (63%), Gaps = 3/387 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +A  LF  I  ++ VSWNAM+A +AQ+    +AL   +EM   N  PN  T+  VL ACA
Sbjct: 216 DARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACA 275

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
           +   L  G  + + I   GL  +L L NAL DMY+KCG L+ A+++F  I  +D +S+N+
Sbjct: 276 QSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNV 335

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +I GYS  +   E+L+LF +M+   ++ + V+F+  + ACA L A+  GK IH    +K 
Sbjct: 336 MIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKF 395

Query: 189 LH-THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
           L  T+  +  S++D Y + G I+ A ++F  +  K   SWN +I G  M G  + A+ LF
Sbjct: 396 LGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELF 455

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGR 306
             MR++G   D ++++ +L+ACSH GLVE G++ F  M  D  + P   HY CM+DLLGR
Sbjct: 456 RQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGR 515

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366
           AGL ++A  L+KN+ ++PD  IWG+LLGACR++GNVELG +AA+HLF L+P++ G Y+LL
Sbjct: 516 AGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLL 575

Query: 367 SNMYAEAGKWDEASKVRELMKSREAKK 393
           SN+YA AG+WD+ +++R  +  +  KK
Sbjct: 576 SNIYATAGRWDDVARIRTKLNDKGMKK 602



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 123/461 (26%), Positives = 206/461 (44%), Gaps = 79/461 (17%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF +I + N   WN M+   + +   + A+     M +    PNS T   +L +CA+
Sbjct: 85  ALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAK 144

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN------------- 117
               + GK+IH  +++ GL  D F+  +L +MYA+ G L  A+ VF+             
Sbjct: 145 VGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTAL 204

Query: 118 -------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
                              I  RD VS+N +I GY+Q+    E+L+ F EM+   +  + 
Sbjct: 205 ITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
            + +  +SACA   +++ G  +        L ++L + N+++D Y++ G +D A  +F+ 
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEG 324

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +  KD  SWN +I GY  +     A+ LF  M++  V  + V++++IL AC++ G ++ G
Sbjct: 325 ICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG 384

Query: 279 K---KYFD----------------EMQAD------------SVKPTEM-HYACMVDLLGR 306
           K    Y D                +M A              +KP  +  +  M+  L  
Sbjct: 385 KWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAM 444

Query: 307 AGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELG-----AWAAEHLFMLKPQ 358
            G    A++L + +     EPD   +  +L AC   G VELG     +   ++    K Q
Sbjct: 445 HGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQ 504

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSW 399
           H G  I   ++   AG +DEA     LMK+ E K + G  W
Sbjct: 505 HYGCMI---DLLGRAGLFDEA---EALMKNMEMKPD-GAIW 538



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 139/271 (51%), Gaps = 8/271 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  LF  I EK+I+SWN M+  ++      +AL L R+M   N  PN VT
Sbjct: 308 MYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVT 367

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVF-NI 118
             ++LPACA    L  GK IHA I +K L   +  L  +L DMYAKCG +  A+ VF  +
Sbjct: 368 FVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGM 427

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +   S+N +I G +     + +L LF +MR  G + D ++F+G +SAC++   ++ G+
Sbjct: 428 KPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGR 487

Query: 179 EIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGM 236
           +     +  + +   L     ++D   R+G  D A  +   + +K D A W +L+    +
Sbjct: 488 QCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRV 547

Query: 237 LGEVD----TAINLFEAMREDGVGYDPVSYI 263
            G V+     A +LFE   E+   Y  +S I
Sbjct: 548 HGNVELGEFAAKHLFELEPENPGAYVLLSNI 578



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 176/410 (42%), Gaps = 74/410 (18%)

Query: 50  PIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA--KCG 107
           P +    N  +LT +L  C     L   K+IH++II+ GL+   F  + L +  A    G
Sbjct: 25  PPYKLLQNHPSLT-LLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCAISPFG 80

Query: 108 CLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS 166
            L+ A  +F +I   ++  +N +I G S +S    ++  +  M L G++ +  +F   + 
Sbjct: 81  NLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLK 140

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR------------------ 208
           +CA + A ++GK+IHG  ++  L +  FV  S+++ Y ++G                   
Sbjct: 141 SCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVS 200

Query: 209 -------------IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
                        +D A ++F+ +PV+D+ SWN +I GY   G  + A+  F+ M+   V
Sbjct: 201 FTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANV 260

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
             +  + + +L+AC+  G +E G      ++   +         ++D+  + G ++ A  
Sbjct: 261 APNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARD 320

Query: 316 LIKNL----------------------------------PVEPDANIWGALLGACRIYGN 341
           L + +                                   VEP+   + ++L AC   G 
Sbjct: 321 LFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGA 380

Query: 342 VELGAWAAEHL--FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
           ++LG W   ++    L   +   +  L +MYA+ G  + A +V   MK +
Sbjct: 381 LDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPK 430


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 163/418 (38%), Positives = 254/418 (60%), Gaps = 8/418 (1%)

Query: 5   SSRPAEASYL------FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           S +  E+ YL      F  + +++IVSWN +++  AQN +   AL +VREM   +  P+S
Sbjct: 137 SKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDS 196

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            TL++VLP  A    L  GKEIH   IR G + D+F+ ++L DMYAKC  ++ +  VF  
Sbjct: 197 FTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYM 256

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +   D +S+N +I G  Q     E L  F +M +  +K + VSF   + ACA+L  +  G
Sbjct: 257 LPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLG 316

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K++HG  IR     ++F+A++++D Y + G I  A  IFD + + D  SW  +I+GY + 
Sbjct: 317 KQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALH 376

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G    AI+LF+ M  +GV  + V+++A+LTACSH GLV++  KYF+ M  D  + P   H
Sbjct: 377 GHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEH 436

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YA + DLLGR G +E+A + I ++ +EP  ++W  LL ACR++ N+EL    ++ LF + 
Sbjct: 437 YAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVD 496

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           PQ+ G Y+LLSN+Y+ AG+W +A K+R  M+ +  KK P CSW++ +++V  FV  D+
Sbjct: 497 PQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDK 554



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 135/234 (57%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK +R  ++  +F+ + + + +SWN+++A   QN +  + L+  ++M I    PN V+
Sbjct: 240 MYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVS 299

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++++PACA    L  GK++H  IIR   + ++F+ +AL DMYAKCG +  A+ +F+ + 
Sbjct: 300 FSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKME 359

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
             D VS+  +I+GY+      +++SLF  M + G+K + V+FM  ++AC++   + +  K
Sbjct: 360 LYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWK 419

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
             + +T    +   L    ++ D   R GR++ A +    + ++ + S W+TL+
Sbjct: 420 YFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLL 473



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 133/325 (40%), Gaps = 44/325 (13%)

Query: 50  PIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL 109
           P HN FP+      VL +C     LR G+ +H  IIR G+ FDL+  NAL +MY+K   L
Sbjct: 8   PDHNVFPS------VLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSL 61

Query: 110 NLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM---KHDVVSFMGAIS 166
                                 G  +  D S+ L    E R +G     HD+   +    
Sbjct: 62  EEG-------------------GVQRFCD-SKMLGGIPEPREIGKCSNSHDLPCELD--- 98

Query: 167 ACANLAAIKQGKEIH---GVTIRKHLHTHLFVANSILDFYTRSGR----IDLANKIFDCL 219
               +A I Q  +++    +  + + +  +F      D Y++  +    +    K+F+ +
Sbjct: 99  --ERVAGIDQNGDLNQMSNILYQVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMM 156

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
           P +D  SWNT+I G    G  + A+ +   M    +  D  +  ++L   +    + KGK
Sbjct: 157 PKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGK 216

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
           +       +         + ++D+  +   ++D+ ++   LP + D   W +++  C   
Sbjct: 217 EIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLP-QHDGISWNSIIAGCVQN 275

Query: 340 GNVELGAWAAEHLFM--LKPQHCGY 362
           G  + G    + + +  +KP H  +
Sbjct: 276 GMFDEGLKFFQQMLIAKIKPNHVSF 300


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 158/416 (37%), Positives = 259/416 (62%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A   + ++ +K+I++WNA+++ ++Q    L A+ L  +M   +   N  T
Sbjct: 328 MYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTT 387

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L+ VL + A    ++  K+IH   I+ G+  D ++ N+L D Y KC  ++ A  +F   +
Sbjct: 388 LSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERT 447

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           + D V+Y  +I  YSQ  D  E+L L+ +M+   +K D       ++ACANL+A +QGK+
Sbjct: 448 WEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQ 507

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+      +F +NS+++ Y + G I+ A++ F  +P +   SW+ +I GY   G 
Sbjct: 508 LHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGH 567

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LF  M  DGV  + ++ +++L AC+H GLV +GK+YF++M+    +KPT+ HYA
Sbjct: 568 GKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYA 627

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLGR+G + +AV+L+ ++P E D  +WGALLGA RI+ N+ELG  AA+ LF L+P+
Sbjct: 628 CMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPE 687

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G ++LL+N+YA AG W+  +KVR+ MK  + KK PG SW++ +D+V  F+V DR
Sbjct: 688 KSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDR 743



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 207/434 (47%), Gaps = 54/434 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     ++  LF  I E+N+VSWNA+ + + Q+ L  +A+ L +EM      PN  +
Sbjct: 126 MYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFS 185

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           ++ +L ACA       G++IH  +++ GL+ D F  NAL DMY+K G +  A  VF +I+
Sbjct: 186 ISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIA 245

Query: 120 FRDEVSYNILIVGYSQTSDCSE-SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             D VS+N +I G     DC++ +L L  EM+  G + ++ +   A+ ACA +   + G+
Sbjct: 246 HPDVVSWNAIIAG-CVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGR 304

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++H   I+   H+ LF A  ++D Y++   +D A + +D +P KD  +WN LI GY   G
Sbjct: 305 QLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCG 364

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTA------------------------------ 268
           +   A++LF  M  + + ++  +   +L +                              
Sbjct: 365 DHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVIN 424

Query: 269 --------CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---I 317
                   C+H   +++  K F+E   + +    + Y  M+    + G  E+A+KL   +
Sbjct: 425 SLLDTYGKCNH---IDEASKIFEERTWEDL----VAYTSMITAYSQYGDGEEALKLYLQM 477

Query: 318 KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGK 375
           ++  ++PD  I  +LL AC      E G     H        C  +    L NMYA+ G 
Sbjct: 478 QDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFM-CDIFASNSLVNMYAKCGS 536

Query: 376 WDEASKVRELMKSR 389
            ++A +    + +R
Sbjct: 537 IEDADRAFSEIPNR 550



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 168/334 (50%), Gaps = 2/334 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K  R   A  L    +E ++VSW+++++ + QN    +AL +  EM +     N  T
Sbjct: 25  LYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFT 84

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL AC+    L  G+++H   +  G   D F+ N L  MYAKCG L+ ++ +F  I 
Sbjct: 85  FPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIV 144

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+N L   Y Q+  C E++ LF EM   G+  +  S    ++ACA L     G++
Sbjct: 145 ERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRK 204

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG+ ++  L    F AN+++D Y+++G I+ A  +F  +   D  SWN +I G  +   
Sbjct: 205 IHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDC 264

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D A+ L + M+  G   +  +  + L AC+  G  E G++    +              
Sbjct: 265 NDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVG 324

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +VD+  +  +M+DA +   ++P + D   W AL+
Sbjct: 325 LVDMYSKCEMMDDARRAYDSMP-KKDIIAWNALI 357



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 135/264 (51%), Gaps = 6/264 (2%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVGYSQTS 137
           E+HA +I+ G + D  L N L  +Y+KC     A+ + + S   D VS++ L+ GY Q  
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
              E+L +F+EM LLG+K +  +F   + AC+    +  G+++HG+ +     +  FVAN
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
           +++  Y + G +D + ++F  +  ++  SWN L   Y        A+ LF+ M   G+  
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 258 DPVSYIAILTACSHGGLVEK--GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
           +  S   IL AC+  GL E   G+K    M    +   +     +VD+  +AG +E AV 
Sbjct: 182 NEFSISIILNACA--GLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVA 239

Query: 316 LIKNLPVEPDANIWGALLGACRIY 339
           + +++   PD   W A++  C ++
Sbjct: 240 VFQDIA-HPDVVSWNAIIAGCVLH 262


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 163/415 (39%), Positives = 249/415 (60%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+       A  +F  +  K++VSW  M+  +AQ  L  +A++L R M I +  PN +T
Sbjct: 181 MYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEIT 240

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L NVL ACAR   L   K++H  I   G+ F   LT+AL D+Y KCGC  LA+++FN + 
Sbjct: 241 LVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMP 300

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++   +NI+I G+ + SD  E+LSLF+EM+L G+K D V+    + AC +L A++ GK 
Sbjct: 301 EKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKW 360

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H    ++ +   + +  +++D Y + G I+ A ++F  +P KD  +W  LI+G  M G+
Sbjct: 361 LHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQ 420

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LF  M+   V  D ++++ +L ACSH GLV +G  YF+ M     ++P+  HY 
Sbjct: 421 GLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYG 480

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGRAG + +A  LI+N+P+ PD  +   LL ACRI+GN+ +   AA+ L  L P+
Sbjct: 481 CMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPK 540

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + G Y+LLSN+Y+    W+ A K+RELM  R  KK PGCS ++    V +FV  D
Sbjct: 541 NGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGD 595



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 163/324 (50%), Gaps = 5/324 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F+ I      + N+++  +    L  +A+   + M +    P+  T  ++  +C  
Sbjct: 93  ARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCG- 151

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              L  GK++H    + G   D ++ N L +MY+ CGCL  A+ VF+ +  +  VS+  +
Sbjct: 152 --VLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATM 209

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I  Y+Q     E++ LF  M +  +K + ++ +  ++ACA    ++  K++H       +
Sbjct: 210 IGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGI 269

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             H  + ++++D Y + G   LA  +F+ +P K+   WN +I G+    + + A++LF  
Sbjct: 270 GFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNE 329

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M+  GV  D V+  ++L AC+H G +E GK     ++ + ++        +VD+  + G 
Sbjct: 330 MQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGS 389

Query: 310 MEDAVKLIKNLPVEPDANIWGALL 333
           +E A+++ + +P E D   W AL+
Sbjct: 390 IESAMRVFQEMP-EKDVMTWTALI 412



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 147/353 (41%), Gaps = 45/353 (12%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYA--KCGCLNLAQNVFN-ISFRDEVSYNILIVGYS 134
           K+IHA+++R  L  D F  + +    A    G L  A+ VFN I      + N +I GY+
Sbjct: 57  KQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYT 116

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
             +   +++  +  M L G+  D  +F     +C  L    +GK++H  + +    +  +
Sbjct: 117 NKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLC---EGKQLHCHSTKLGFASDAY 173

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           + N++++ Y+  G +  A K+FD +  K   SW T+I  Y        AI LF  M    
Sbjct: 174 IQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIAS 233

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
           V  + ++ + +LTAC+    +E  K+    +    +    +  + ++D+  + G    A 
Sbjct: 234 VKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLAR 293

Query: 315 KLIKNLP----------------------------------VEPDANIWGALLGACRIYG 340
            L   +P                                  V+ D     +LL AC   G
Sbjct: 294 DLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLG 353

Query: 341 NVELGAWAAEHLFMLKPQ---HCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390
            +ELG W   H+++ K +          L +MYA+ G  + A +V + M  ++
Sbjct: 354 ALELGKWL--HVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKD 404


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 164/412 (39%), Positives = 250/412 (60%), Gaps = 23/412 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  + E+N+VSW +M+A + ++     A++L+++M       + V 
Sbjct: 295 MYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVA 354

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T++L ACAR   L  GK++H  I    +  +LF+ NAL DMY KCG ++ A +VF+ + 
Sbjct: 355 TTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMV 414

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+N +I                       +K D  +    + ACA+L+A+++GKE
Sbjct: 415 VKDIISWNTMIGE---------------------LKPDSRTMACILPACASLSALERGKE 453

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R    +   VAN+++D Y + G + LA  +FD +P KD  SW  +I GYGM G 
Sbjct: 454 IHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGY 513

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + AI  F  MR+ G+  D VS+I+IL ACSH GL+E+G ++F  M+ D +++P   HYA
Sbjct: 514 GNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYA 573

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLL R G +  A + I+ LP+ PDA IWGALL  CRIY ++EL    AE +F L+P+
Sbjct: 574 CMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPE 633

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
           + GYY+LL+N+YAEA KW+E  ++RE +  +  +KNPGCSW++ + +V  FV
Sbjct: 634 NTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFV 685



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 170/411 (41%), Gaps = 77/411 (18%)

Query: 5   SSRPAEASYLFHNIAEKNIVSWNAMVANFAQ-----NRLELKALQLVREMPIHNEFPNSV 59
           S  P   S       ++ +  +NA + +F Q     N +EL  +    E+        + 
Sbjct: 48  SCLPIRISATPTRTIDRQVTDYNAKILHFCQLGNLENAMELVCMCQKSEL-------ETK 100

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA------- 112
           T ++VL  CA    L  GK++H+ I    +  D  L   L  +YA CG L          
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTM 160

Query: 113 --QNVFNISF-------------------------------------------RDEVSYN 127
             +NV+  +F                                           RD +S+N
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            +I GY         L ++ +M  LG+  D+ + +  +  CAN   +  GK +H + I+ 
Sbjct: 221 SMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                +  +N++LD Y++ G +D A ++F+ +  ++  SW ++I GY   G  D AI L 
Sbjct: 281 TFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLL 340

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
           + M ++GV  D V+  +IL AC+  G ++ GK   D ++A++++        ++D+  + 
Sbjct: 341 QQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKC 400

Query: 308 GLMEDAVKLIKNLPV-------------EPDANIWGALLGACRIYGNVELG 345
           G M+ A  +   + V             +PD+     +L AC     +E G
Sbjct: 401 GSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLSALERG 451



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 116/299 (38%), Gaps = 39/299 (13%)

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R    YN  I+ + Q  +   ++ L    +   +  +  ++   +  CA   ++  GK++
Sbjct: 64  RQVTDYNAKILHFCQLGNLENAMELVCMCQKSEL--ETKTYSSVLQLCAGSKSLTDGKKV 121

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H +    ++     +   ++  Y   G +    ++FD +  K+   WN ++  Y  +G+ 
Sbjct: 122 HSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDF 181

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             +I LF+ M E G+                G   E   + FD++    V    + +  M
Sbjct: 182 KESICLFKIMVEKGI---------------EGKRPESASELFDKLCDRDV----ISWNSM 222

Query: 301 VDLLGRAGLMEDAVKLIKN---LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +      GL E  +++ K    L ++ D     ++L  C   G + LG   A H   +K 
Sbjct: 223 ISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG--KAVHSLAIKS 280

Query: 358 ---QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQ-----TRDEVQD 408
              +   +   L +MY++ G  D A +V E M  R        SW       TRD   D
Sbjct: 281 TFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNV-----VSWTSMIAGYTRDGRSD 334


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 162/417 (38%), Positives = 255/417 (61%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA       A  +F    ++++VSW  M+  + +     + + L  EM   N   + +T
Sbjct: 169 MYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMT 228

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           L  VL +CAR   LR G+++H  IIR   +N D+F+ NAL DMY KCG  N A+ VF  +
Sbjct: 229 LVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEM 288

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             ++ VS+N +I G +Q     ESL +F +M+ LG+K D V+ +  +++CANL  ++ GK
Sbjct: 289 PVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGK 348

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H    R  +    F+ N+++D Y + G ID A  +F  +  KD  S+  +I+G  M G
Sbjct: 349 WVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHG 408

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
           +   A++LF  M + G+  D V+++ +LTACSH GLVE+G+KYF++M    +++P   HY
Sbjct: 409 QGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHY 468

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLLGRAGL+ +A + I+N+P+EPDA + GALLGAC+I+G VELG    + +  ++P
Sbjct: 469 GCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEP 528

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +  G Y+L+SN+Y+ A +W +A K+R+ MK R  +K PGCS ++    + +F   D+
Sbjct: 529 RKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDK 585



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/414 (28%), Positives = 204/414 (49%), Gaps = 41/414 (9%)

Query: 8   PAEASYLFHNIAEKNIVSWNAMVANFA-QNRLELKALQLVREMPIHNEFPNSVTLTNVLP 66
           P  A  L   +   N+  +NA++   A  N   ++ L + ++M      P++ T+  VL 
Sbjct: 74  PRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLK 133

Query: 67  ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVS 125
           ACA    +R G+E+H + I+ GL  D++++N L  MYA C  +  A+ VF+ S  RD VS
Sbjct: 134 ACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVS 193

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           +  +I GY +     E + LF EM    ++ D ++ +  +S+CA L  ++ G+++H   I
Sbjct: 194 WTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYII 253

Query: 186 R-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
           R  +++  +FV N+++D Y + G  + A K+F  +PVK+  SWN++I G    G+   ++
Sbjct: 254 RNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESL 313

Query: 245 NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK---KYFD--EMQADSV--------- 290
            +F  M+  GV  D V+ +A+L +C++ G++E GK    Y D  +++AD           
Sbjct: 314 YMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMY 373

Query: 291 -----------------KPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWG 330
                            +     Y  M+  L   G    A+ L   +P   +EPD   + 
Sbjct: 374 AKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFV 433

Query: 331 ALLGACRIYGNVELGAWAAEHL---FMLKPQHCGYYILLSNMYAEAGKWDEASK 381
            +L AC   G VE G    E +   + L+PQ   +Y  + ++   AG  +EA +
Sbjct: 434 GVLTACSHVGLVEEGRKYFEDMSTIYNLRPQ-LEHYGCMVDLLGRAGLINEAEE 486



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 174/386 (45%), Gaps = 55/386 (14%)

Query: 52  HNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL 111
           H+  P+ ++  + L  C     ++  K+IHA II+   + D  LT + T + A C     
Sbjct: 16  HDFNPHKLSFLSTLQTCKS---IKGLKQIHASIIKTMPSPDAQLTIS-TRLSALCAQSLP 71

Query: 112 AQNVFNISFRDEVS------YNILIVGYSQTS-DCSESLSLFSEMRLLGMKHDVVSFMGA 164
               + +S   ++       YN +I G + ++ D  E L ++ +M   G+  D  +    
Sbjct: 72  IDPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFV 131

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           + ACA   A+++G+E+HG  I+  L + ++V+N+++  Y     I  A K+FD  P +D 
Sbjct: 132 LKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDL 191

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY--- 281
            SW T+I GY  +G     + LF  M  + +  D ++ + +L++C+  G +  G+K    
Sbjct: 192 VSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRY 251

Query: 282 ---------------------------------FDEMQADSVKPTEMHYACMVDLLGRAG 308
                                            F EM   +V    + +  M+  L + G
Sbjct: 252 IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNV----VSWNSMISGLAQKG 307

Query: 309 LMEDAV---KLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY-I 364
             ++++   + ++ L V+PD     A+L +C   G +ELG W   +L   + +  G+   
Sbjct: 308 QFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGN 367

Query: 365 LLSNMYAEAGKWDEASKVRELMKSRE 390
            L +MYA+ G  D+A  V + M  ++
Sbjct: 368 ALVDMYAKCGSIDQACWVFQAMNRKD 393


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 164/412 (39%), Positives = 250/412 (60%), Gaps = 23/412 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  + E+N+VSW +M+A + ++     A++L+++M       + V 
Sbjct: 295 MYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVA 354

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T++L ACAR   L  GK++H  I    +  +LF+ NAL DMYAKCG +  A +VF+ + 
Sbjct: 355 ITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMV 414

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+N +I                       +K D  +    + ACA+L+A+++GKE
Sbjct: 415 VKDIISWNTMIGE---------------------LKPDSRTMACVLPACASLSALERGKE 453

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R    +   VAN+++D Y + G + LA  +FD +P KD  SW  +I GYGM G 
Sbjct: 454 IHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGY 513

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + AI  F  MR+ G+  D VS+I+IL ACSH GL+E+G ++F  M+ D +++P   HYA
Sbjct: 514 GNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYA 573

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLL R G +  A + I+ LP+ PDA IWGALL  CR Y ++EL    AE +F L+P+
Sbjct: 574 CMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPE 633

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
           + GYY+LL+N+YAEA KW+E  ++RE +  +  +KNPGCSW++ + +V  FV
Sbjct: 634 NSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFV 685



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 159/372 (42%), Gaps = 65/372 (17%)

Query: 20  EKNIVSWNAMVANFAQ-----NRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL 74
           +  +  +NA + +F Q     N +EL  +    E+        + T ++VL  CA     
Sbjct: 63  DHQVTDYNAKILHFCQLGDLENAMELICMCKKSEL-------ETKTYSSVLQLCAGLKSF 115

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA---------QNVFNISF----- 120
             GK++H+ I    +  D  L   L   YA CG L            +NV+  +F     
Sbjct: 116 TDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEY 175

Query: 121 --------------------------------------RDEVSYNILIVGYSQTSDCSES 142
                                                 RD +S+N +I GY         
Sbjct: 176 AKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERG 235

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
           L ++ +M  LG+  D+ + +  +  CAN   +  GK +H + I+      +  +N++LD 
Sbjct: 236 LGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDM 295

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y++ G +D A ++F+ +  ++  SW ++I GY   G  D AI L + M ++GV  D V+ 
Sbjct: 296 YSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAI 355

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
            +IL AC+  G ++ GK   D ++A++++        ++D+  + G ME A  +   + V
Sbjct: 356 TSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVV 415

Query: 323 EPDANIWGALLG 334
           + D   W  ++G
Sbjct: 416 K-DIISWNTMIG 426



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 114/294 (38%), Gaps = 39/294 (13%)

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           YN  I+ + Q  D   ++ L    +   +  +  ++   +  CA L +   GK++H +  
Sbjct: 69  YNAKILHFCQLGDLENAMELICMCKKSEL--ETKTYSSVLQLCAGLKSFTDGKKVHSIIK 126

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
              +     +   ++ FY   G +    ++FD +  K+   WN ++  Y  +G+   +I 
Sbjct: 127 SNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           LF+ M E G+                G   E   + FD++    V    + +  M+    
Sbjct: 187 LFKIMVEKGI---------------EGKRPESAFELFDKLCDRDV----ISWNSMISGYV 227

Query: 306 RAGLMEDAVKLIKN---LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP---QH 359
             GL E  + + K    L ++ D     ++L  C   G + LG   A H   +K    + 
Sbjct: 228 SNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG--KAVHSLAIKSSFERR 285

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQ-----TRDEVQD 408
             +   L +MY++ G  D A +V E M  R        SW       TRD   D
Sbjct: 286 INFSNTLLDMYSKCGDLDGALRVFEKMGERNV-----VSWTSMIAGYTRDGRSD 334


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 163/416 (39%), Positives = 253/416 (60%), Gaps = 2/416 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +      +  +F  +  K + SWNA++  +AQN    KAL L  +M      P+  T+
Sbjct: 352 YTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTI 411

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++L AC+R   L  G+EIH   +R GL  D F+  +L  +Y  CG    AQ +F+ +  
Sbjct: 412 GSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEH 471

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R  VS+N++I GYSQ     E+++LF +M   G++   ++ M    AC+ L+A++ GKE+
Sbjct: 472 RSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKEL 531

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++ HL   +FV++SI+D Y + G I L+ +IFD L  KD ASWN +I GYG+ G  
Sbjct: 532 HCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRG 591

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYAC 299
             A+ LFE M   G+  D  ++  IL ACSH GLVE G +YF++M    +++P   HY C
Sbjct: 592 KEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTC 651

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VD+LGRAG ++DA++LI+ +P +PD+ IW +LL +CRI+GN+ LG   A  L  L+P+ 
Sbjct: 652 VVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEK 711

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
              Y+L+SN++A +GKWD+  +VR  MK    +K+ GCSW++   +V +F++ D M
Sbjct: 712 PENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEM 767



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 206/438 (47%), Gaps = 54/438 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE--FPNS 58
           MY K     EA  +F ++ E+N+VSWN+++  F++N    ++    REM +  E   P+ 
Sbjct: 145 MYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDV 204

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
            TL  VLP CA    +  G  +H   ++ GLN +L + N+L DMY+KC  L+ AQ +F+ 
Sbjct: 205 ATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDK 264

Query: 119 SFRDE-VSYNILIVGYSQTSDCSESLSLFSEMRL--LGMKHDVVSFMGAISACANLAAIK 175
           + +   VS+N +I GY++  D   +  L  +M+     MK D  + +  +  C   + ++
Sbjct: 265 NDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQ 324

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
             KE+HG + R  L ++  VAN+ +  YTR G +  + ++FD +  K  +SWN L+ GY 
Sbjct: 325 SLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYA 384

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG------ 278
              +   A++L+  M + G+  D  +  ++L ACS           HG  +  G      
Sbjct: 385 QNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPF 444

Query: 279 ------------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
                             +  FD M+  S+    + +  M+    + GL ++A+ L + +
Sbjct: 445 IGISLLSLYICCGKPFAAQVLFDGMEHRSL----VSWNVMIAGYSQNGLPDEAINLFRQM 500

Query: 321 ---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS----NMYAEA 373
               ++P       + GAC     + LG     H F LK  H    I +S    +MYA+ 
Sbjct: 501 LSDGIQPYEIAIMCVCGACSQLSALRLG--KELHCFALKA-HLTEDIFVSSSIIDMYAKG 557

Query: 374 GKWDEASKVRELMKSREA 391
           G    + ++ + ++ ++ 
Sbjct: 558 GCIGLSQRIFDRLREKDV 575



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 131/234 (55%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y    +P  A  LF  +  +++VSWN M+A ++QN L  +A+ L R+M      P  + 
Sbjct: 452 LYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIA 511

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  V  AC++   LR GKE+H   ++  L  D+F+++++ DMYAK GC+ L+Q +F+ + 
Sbjct: 512 IMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLR 571

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D  S+N++I GY       E+L LF +M  LG+K D  +F G + AC++   ++ G E
Sbjct: 572 EKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLE 631

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
                +  H +   L     ++D   R+GRID A ++ + +P   DS  W++L+
Sbjct: 632 YFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLL 685



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 145/276 (52%), Gaps = 8/276 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           MY+    P+++  +F  +  KN+  WNA+V+ + +N L   A+ +  E+  +    P++ 
Sbjct: 43  MYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNF 102

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           TL  V+ ACA    L  G+ IH    +  L  D+F+ NAL  MY KCG +  A  VF ++
Sbjct: 103 TLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHM 162

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH---DVVSFMGAISACANLAAIK 175
             R+ VS+N +I G+S+     ES + F EM L+G +    DV + +  +  CA    I+
Sbjct: 163 PERNLVSWNSIICGFSENGFLQESFNAFREM-LVGEESFVPDVATLVTVLPVCAGEEDIE 221

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           +G  +HG+ ++  L+  L V NS++D Y++   +  A  +FD    K+  SWN++I GY 
Sbjct: 222 KGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYA 281

Query: 236 MLGEVDTAINLFEAMR-EDG-VGYDPVSYIAILTAC 269
              +V     L + M+ ED  +  D  + + +L  C
Sbjct: 282 REEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVC 317



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 113/221 (51%), Gaps = 7/221 (3%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           +L AC +   +  G+ +H  ++     F  D  L   +  MY+ CG  + ++ VF+ +  
Sbjct: 4   LLQACGQRKDIEVGRRLH-EMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR 62

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           ++   +N ++  Y++     +++S+FSE+  +   K D  +    I ACA L  +  G+ 
Sbjct: 63  KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 122

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG+  +  L + +FV N+++  Y + G ++ A K+F+ +P ++  SWN++I G+   G 
Sbjct: 123 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGF 182

Query: 240 VDTAINLFEAM--REDGVGYDPVSYIAILTACSHGGLVEKG 278
           +  + N F  M   E+    D  + + +L  C+    +EKG
Sbjct: 183 LQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKG 223


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 169/453 (37%), Positives = 256/453 (56%), Gaps = 39/453 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K    A A  +F  + E+N+V+WN+++  + QN    +AL++   M      P+ VT
Sbjct: 191 MYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVT 250

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
           L +V+ ACA    L+ G +IHAR+++      DL L NAL DMYAKC  +N A+ VF+  
Sbjct: 251 LASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310

Query: 118 ------------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
                                         ++ R+ VS+N LI GY+Q  +  E+L LF 
Sbjct: 311 SIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFR 370

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH------GVTIRKHLHTHLFVANSILD 201
            ++   +     +F   +SACANLA +  G++ H      G   +    + +FV NS++D
Sbjct: 371 LLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLID 430

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y + G I+  +++F+ +  +D  SWN +I+GY   G    A+ +F  M   G   D V+
Sbjct: 431 MYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVT 490

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
            I +L ACSH GLVE+G+ YF  M+   + P + HY CMVDLLGRAG + +A  LI+ +P
Sbjct: 491 MIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMP 550

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381
           V PDA +WG+LL AC+++GN+E+G  AAE L  + P + G Y+LLSNMYAE G+W +  +
Sbjct: 551 VNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVR 610

Query: 382 VRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           VR+LM+ +   K PGCSW++    V  F+V D+
Sbjct: 611 VRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDK 643



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/397 (27%), Positives = 193/397 (48%), Gaps = 45/397 (11%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
            KS    EA+ LF ++ E +  SWN+MV+ FAQ+    ++L+   +M   +   N  +  
Sbjct: 92  TKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFG 151

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           + L ACA    L  G ++HA + +   + D+++ +AL DMY+KCG +  A+ VF+ +  R
Sbjct: 152 SALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIER 211

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + V++N LI  Y Q    SE+L +F  M   G++ D V+    +SACA+L A+K+G +IH
Sbjct: 212 NLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIH 271

Query: 182 GVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
              ++ +     L + N+++D Y +  +++ A ++FD + +++  S  +++ GY     V
Sbjct: 272 ARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASV 331

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A  +F  M +  V    VS+ A++   +  G  E+  + F  ++ +S+ PT  HY   
Sbjct: 332 KAARFMFSKMTQRNV----VSWNALIAGYTQNGENEEALRLFRLLKRESIWPT--HYT-- 383

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF-----ML 355
                                       +G LL AC    ++ LG  A  H+        
Sbjct: 384 ----------------------------FGNLLSACANLADLLLGRQAHTHVLKQGFEFQ 415

Query: 356 KPQHCGYYI--LLSNMYAEAGKWDEASKVRELMKSRE 390
                  ++   L +MY + G  ++ S+V E MK R+
Sbjct: 416 SGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERD 452


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 164/414 (39%), Positives = 252/414 (60%), Gaps = 10/414 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA++    EA  LF      ++ +W AMV+ + QNR+  +A +L   MP  NE    V+ 
Sbjct: 255 YAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNE----VSW 310

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             +L    +G  +   KE+   +  + ++      N +   YA+CG ++ A+N+F+ +  
Sbjct: 311 NAMLAGYVQGERVEMAKELFDVMPCRNVS----TWNTMITGYAQCGKISEAKNLFDKMPK 366

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VS+  +I GYSQ+    E+L LF  M   G + +  SF  A+S CA++ A++ GK++
Sbjct: 367 RDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQL 426

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  ++    T  FV N++L  Y + G I+ AN +F  +  KD  SWNT+I GY   G  
Sbjct: 427 HGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFG 486

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
           + A+  FE+M+ +G+  D  + +A+L+ACSH GLV+KG++YF  M  D  V+P   HYAC
Sbjct: 487 EEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYAC 546

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGRAGL+E+A  L+KN+P EPDA IWG LLGA R++GN EL   AA+ +F ++P++
Sbjct: 547 MVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPEN 606

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G Y+LLSN+YA +G+W +  K+R  M+ +  KK PG SW++ +++   F V D
Sbjct: 607 SGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD 660



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 131/291 (45%), Gaps = 44/291 (15%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  + E+++VSWN M+  + +NR   KA +L   MP      +  +   +L   A+
Sbjct: 109 ARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPER----DVCSWNTILSGYAQ 164

Query: 71  GHFLRPGKEIHARIIRKG---------------------------LNFDLFLTNALTDMY 103
              +   + +  R+  K                             N+ L   N L   +
Sbjct: 165 NGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGF 224

Query: 104 AKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM 162
            K   +  A+  F+ +  RD VS+N +I GY+Q  +  E+  LF E  +    HDV ++ 
Sbjct: 225 VKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPV----HDVFTWT 280

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
             +S       +++ +E+      +    +    N++L  Y +  R+++A ++FD +P +
Sbjct: 281 AMVSGYIQNRMVEEAREL----FDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCR 336

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
           + ++WNT+I GY   G++  A NLF+ M +     DPVS+ A++   S  G
Sbjct: 337 NVSTWNTMITGYAQCGKISEAKNLFDKMPKR----DPVSWAAMIAGYSQSG 383



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 165/363 (45%), Gaps = 34/363 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN-RLELKALQLVREMPIHNEFPNSVT 60
           Y ++ R +EA  +F  +   + VS+NAM++ + +N   EL A  L  EMP      + V+
Sbjct: 69  YMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFEL-ARMLFDEMPER----DLVS 123

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              ++    R   L   +E+  R+  +    D+   N +   YA+ GC++ A+ VF+ + 
Sbjct: 124 WNVMIKGYVRNRNLGKARELFERMPER----DVCSWNTILSGYAQNGCVDDARRVFDRMP 179

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +++VS+N L+  Y Q S   E+  LF       +    VS+      C     +K+ K 
Sbjct: 180 EKNDVSWNALLSAYVQNSKLEEACVLFGSRENWAL----VSW-----NCLLGGFVKKKKI 230

Query: 180 IHGVTIRKHLHTHLFVA-NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +        +     V+ N+I+  Y ++G ID A ++FD  PV D  +W  ++ GY    
Sbjct: 231 VEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNR 290

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
            V+ A  LF+ M E     + VS+ A+L     G  VE  K+ FD M   +V      + 
Sbjct: 291 MVEEARELFDRMPER----NEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVST----WN 342

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            M+    + G + +A  L   +P + D   W A++      G+    ++ A  LF+L  +
Sbjct: 343 TMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSGH----SYEALRLFVLMER 397

Query: 359 HCG 361
             G
Sbjct: 398 EGG 400



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 2/143 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA+ LF  +A K+IVSWN M+A ++++    +AL+    M      P+  T
Sbjct: 448 MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDAT 507

Query: 61  LTNVLPACARGHFLRPGKE-IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           +  VL AC+    +  G++  H      G+  +      + D+  + G L  A N+  N+
Sbjct: 508 MVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNM 567

Query: 119 SFRDEVSYNILIVGYSQTSDCSE 141
            F  + +    ++G S+    +E
Sbjct: 568 PFEPDAAIWGTLLGASRVHGNTE 590


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 171/453 (37%), Positives = 265/453 (58%), Gaps = 40/453 (8%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MYAK   P EA  +F  + E+NIVSWN+++  + QN    +AL L   M      P+ VT
Sbjct: 936  MYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVT 995

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
            L +V+ ACA     R G+++HAR+++      D+ L+NAL DMYAKCG    A+ VF+ +
Sbjct: 996  LASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRM 1055

Query: 119  SFRDEVSYNILIVGYSQTSDCSESLSLFSEM-------------------------RL-L 152
            + R  VS   LI GY+++++  ++  +FS+M                         RL +
Sbjct: 1056 ASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFV 1115

Query: 153  GMKHDVV-----SFMGAISACANLAAIKQGKEIHGVTIRKHLH------THLFVANSILD 201
             +K + V     ++   ++AC N+A ++ G++ H   +++         + +FV NS++D
Sbjct: 1116 RLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVD 1175

Query: 202  FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
             Y ++G ID   K+F+ +  +D+ SWN +I+G+   G    A++LFE M       D V+
Sbjct: 1176 MYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVT 1235

Query: 262  YIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
             I +L+AC H GLVE+G++YF  M  D  + P++ HY CM+DLLGRAG +++  +LIK +
Sbjct: 1236 MIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEM 1295

Query: 321  PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
             +EPDA +W +LLG+CR++ NVE+G WAA  LF L P++ G Y+LLSNMYAE GKW +  
Sbjct: 1296 SMEPDAVLWASLLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVF 1355

Query: 381  KVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            +VR  MK R   K PGCSW++   +V  F+  D
Sbjct: 1356 RVRSSMKHRGVSKQPGCSWIEIGRKVSVFLARD 1388



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 192/351 (54%), Gaps = 4/351 (1%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
           A   R A+A  +F  + E+N+VSWNAM+  + ++     AL L ++M       +++TL 
Sbjct: 329 ASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLG 388

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI---S 119
           +VL AC     +  G+E+HA  I+ G      L NAL  MY+KCGCL  A+ +      S
Sbjct: 389 SVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGS 448

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD  S+N LI GY + S    +L   ++M+   +  +  +F  A++ACAN+  +KQG +
Sbjct: 449 ERDSYSWNSLISGYERHSMSEAALYALTKMQS-EVTPNQSTFSSALAACANIFLLKQGMQ 507

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   IRK       + + ++D Y +  + D + +IF+  P +D   WN++I G    G+
Sbjct: 508 IHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGK 567

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            +  ++LF+ M++ G+  D V+++  L +C   G V  G+ YF  M  +S+ P   HY C
Sbjct: 568 GEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMDESIIPRIEHYEC 627

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
           M++LLG+ G M +    ++++P EP   +W  +   CR YGN +LG  AA+
Sbjct: 628 MIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAK 678



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 187/398 (46%), Gaps = 45/398 (11%)

Query: 2    YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
            +A+  RPA+A  LFH I + +  S+NA++A  AQ+     AL  +  M   +   N+ + 
Sbjct: 836  HARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSF 895

Query: 62   TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             + L ACA     R G ++HA + +     D+++ +AL DMYAKC     A+ VF  +  
Sbjct: 896  ASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPE 955

Query: 121  RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
            R+ VS+N LI  Y Q     E+L LF  M   G   D V+    +SACA LAA ++G+++
Sbjct: 956  RNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQV 1015

Query: 181  HGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   ++       + ++N+++D Y + GR   A  +FD +  +   S  +LI GY     
Sbjct: 1016 HARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSAN 1075

Query: 240  VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            V+ A  +F  M E  V    +++  ++ A +  G  E+  + F  ++ +SV PT  HY  
Sbjct: 1076 VEDAQMVFSQMVEKNV----IAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPT--HYT- 1128

Query: 300  MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL------F 353
                                         +G +L AC    +++LG  A  H+      F
Sbjct: 1129 -----------------------------YGNVLNACGNVADLQLGQQAHVHVLKEGFRF 1159

Query: 354  MLKPQHCGYY-ILLSNMYAEAGKWDEASKVRELMKSRE 390
               P+   +    L +MY + G  D+ +KV E M +R+
Sbjct: 1160 DFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARD 1197



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 168/362 (46%), Gaps = 41/362 (11%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           A+A  LF  +  ++  SWNA++   ++     +AL L   M      P   T+ +VL  C
Sbjct: 102 ADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCC 161

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
           A    L   +++H  I ++    ++ L  AL D+Y  C  L  A+  F+ I   + +S+N
Sbjct: 162 AECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWN 221

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
           +++  Y        ++ +F  M   G++    +   A+ AC +  A+++G+ IH   +R 
Sbjct: 222 VIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRH 281

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS----------------------- 224
               H+ V +S++D Y + G +D A  +F+  P+KD                        
Sbjct: 282 GYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVF 341

Query: 225 --------ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
                    SWN ++ GY    ++  A+ LF+ MR++   +D ++  ++L+AC+  G+++
Sbjct: 342 EGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACT--GILD 399

Query: 277 KGKKYFDEMQADSVK----PTEMHYACMVDLLGRAGLMEDAVKLIK-NLPVEPDANIWGA 331
            GK   +E+ A ++K     + +    +V +  + G +  A +L+   +  E D+  W +
Sbjct: 400 IGKG--EEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNS 457

Query: 332 LL 333
           L+
Sbjct: 458 LI 459



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 114/237 (48%), Gaps = 13/237 (5%)

Query: 94  FLTNALTDMYAKCGCLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL 152
           FL N   +  A CG +  A+ +F++   RD  S+N +I   S+    SE+LSLFS M  L
Sbjct: 86  FLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSL 145

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G++    +    +S CA    +   +++HG   ++   +++ +  +++D Y     +  A
Sbjct: 146 GIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADA 205

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA--ILTACS 270
            + FD +   ++ SWN ++  Y + G  D A+++F  M   GV   P+ Y     + AC 
Sbjct: 206 RRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGV--RPLGYTVSHAVLACR 263

Query: 271 HGGLVEKGKKYFDEMQADSVKPTEMHY----ACMVDLLGRAGLMEDAVKLIKNLPVE 323
               +E+G+     + A  ++    H+    + +VD+  + G M+ A  L    P++
Sbjct: 264 DNNALEEGRC----IHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMK 316


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 156/423 (36%), Positives = 254/423 (60%), Gaps = 3/423 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSV 59
           MYAK      A  +FH +  +N V+W+A++  F       +A  L ++M +    F ++ 
Sbjct: 248 MYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSAT 307

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           ++ + L  CA    LR G ++HA + + G++ DL   N+L  MYAK G +N A  +F+ I
Sbjct: 308 SVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEI 367

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + +D +SY  L+ GY Q     E+  +F +M+   ++ D+ + +  I AC++LAA++ G+
Sbjct: 368 AIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGR 427

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             HG  I + L     + NS++D Y + GRIDL+ ++FD +P +D  SWNT+I GYG+ G
Sbjct: 428 CSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHG 487

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A  LF +M+  G   D V++I ++ ACSH GLV +GK +FD M     + P   HY
Sbjct: 488 LGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHY 547

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLL R G +++A + I+++P++ D  +WGALLGACRI+ N++LG   +  +  L P
Sbjct: 548 ICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGP 607

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKT 417
           +  G ++LLSN+++ AG++DEA++VR + K +  KK+PGCSW++    +  FV  D+   
Sbjct: 608 EGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHP 667

Query: 418 FTP 420
            +P
Sbjct: 668 CSP 670



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 212/433 (48%), Gaps = 52/433 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +Y + +R   A+ +F  +  +++V+WNAM+A +A + +   A+  + +M       PN+ 
Sbjct: 143 LYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNAS 202

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFD---LFLTNALTDMYAKCGCLNLAQNVF 116
           TL ++LP  A+   L  G  +HA  +R  L+ +   + +  AL DMYAKC  L  A  VF
Sbjct: 203 TLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVF 262

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-DVVSFMGAISACANLAAI 174
           + ++ R+EV+++ LI G+      +E+ +LF +M + GM      S   A+  CA+LA +
Sbjct: 263 HGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADL 322

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           + G ++H +  +  +H  L   NS+L  Y ++G I+ A  +FD + +KD+ S+  L+ GY
Sbjct: 323 RMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGY 382

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA-----------CSHGGLVEKG----- 278
              G+ + A  +F+ M+   V  D  + ++++ A           CSHG ++ +G     
Sbjct: 383 VQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALET 442

Query: 279 -------------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL--- 316
                              ++ FD+M A  +    + +  M+   G  GL ++A  L   
Sbjct: 443 SICNSLIDMYAKCGRIDLSRQVFDKMPARDI----VSWNTMIAGYGIHGLGKEATTLFLS 498

Query: 317 IKNLPVEPDANIWGALLGACRIYGNVELGA-W--AAEHLFMLKPQHCGYYILLSNMYAEA 373
           +KN   EPD   +  L+ AC   G V  G  W     H + + P+   +YI + ++ A  
Sbjct: 499 MKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPR-MEHYICMVDLLARG 557

Query: 374 GKWDEASKVRELM 386
           G  DEA +  + M
Sbjct: 558 GFLDEAYQFIQSM 570



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 186/424 (43%), Gaps = 43/424 (10%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           A A  +F  I   +  ++NA++  ++       A+ L R M      PN  T   VL AC
Sbjct: 50  ALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKAC 109

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYN 127
           +    L  G+ IHA     GL+ DLF++ AL D+Y +C     A NVF  +  RD V++N
Sbjct: 110 SALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWN 169

Query: 128 ILIVGYSQTSDCSESLSLFSEMR-LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
            ++ GY+       +++   +M+   G++ +  + +  +   A   A+ QG  +H   +R
Sbjct: 170 AMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLR 229

Query: 187 KHL---HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
            +L      + +  ++LD Y +   +  A ++F  + V++  +W+ LI G+ +   +  A
Sbjct: 230 AYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEA 289

Query: 244 INLFEAMREDGVGYDPVSYIA-ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
            NLF+ M  +G+ +   + +A  L  C+    +  G +    +    +         ++ 
Sbjct: 290 FNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLS 349

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLG-------------------ACRIYGNVE 343
           +  +AGL+ +A  L   + ++ D   +GALL                    AC +  ++ 
Sbjct: 350 MYAKAGLINEATMLFDEIAIK-DTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIA 408

Query: 344 LGAW---AAEHLFMLKPQHC--GYYIL------------LSNMYAEAGKWDEASKVRELM 386
                  A  HL  L+   C  G  I+            L +MYA+ G+ D + +V + M
Sbjct: 409 TMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKM 468

Query: 387 KSRE 390
            +R+
Sbjct: 469 PARD 472



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 109/239 (45%), Gaps = 16/239 (6%)

Query: 107 GCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI 165
           G L LA+ VF+ I   D  +YN LI  YS       ++ L+  M    +  +  +F   +
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
            AC+ LA +  G+ IH       LHT LFV+ +++D Y R  R   A  +F  +P++D  
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166

Query: 226 SWNTLILGYGMLGEVDTAI-NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG------ 278
           +WN ++ GY   G    AI +L +     G+  +  + +++L   +  G + +G      
Sbjct: 167 AWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAY 226

Query: 279 --KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
             + Y D+ +   +  T      ++D+  +   +  A ++   + V  +   W AL+G 
Sbjct: 227 CLRAYLDQNEEQVLIGTA-----LLDMYAKCKHLVYACRVFHGMTVRNEVT-WSALIGG 279


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 166/443 (37%), Positives = 264/443 (59%), Gaps = 24/443 (5%)

Query: 2   YAKSSRPAEASYLFHNIAEKNI----VSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           Y +S +   A  LF N+ ++NI    ++W+A++A +AQ     +AL   ++M ++   PN
Sbjct: 335 YTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPN 394

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGL------------NFDLFLTNALTDMYAK 105
           SVT+ ++L ACA    L  G E HA  ++K L              DL + NAL DMY+K
Sbjct: 395 SVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSK 454

Query: 106 CGCLNLAQNVFNISFRDE---VSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVS 160
           C     A+ +FN   R E   V++ ++I GY+Q  D +++L LFSEM  +   +  +  +
Sbjct: 455 CRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYT 514

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLH--THLFVANSILDFYTRSGRIDLANKIFDC 218
               + ACA+L++++ GK+IH    R H +  +  FVAN ++D Y++ G +D A  +FD 
Sbjct: 515 ISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDS 574

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P ++  SW +++ GYGM G    A+++F+ M++ G   D +S++ +L ACSH G+V++G
Sbjct: 575 MPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQG 634

Query: 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
             YFD M++D  V  +  HYAC++DLL R+G ++ A K I+ +P+EP A IW ALL ACR
Sbjct: 635 LDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACR 694

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           ++ NVEL  +A   L  +K ++ G Y L+SN+YA A +W + +++R+LMK    KK PGC
Sbjct: 695 VHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGC 754

Query: 398 SWVQTRDEVQDFVVNDRMKTFTP 420
           SWVQ +     F V DR    +P
Sbjct: 755 SWVQGKKGTASFFVGDRSHPLSP 777



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 149/314 (47%), Gaps = 17/314 (5%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMV-ANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y      ++A  +   +     V WN +V A+  + RL+ +A+ +   M      P+  T
Sbjct: 93  YLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLD-RAIGVSCRMLRAGTKPDHFT 151

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L   L AC      R G   H  I   G   ++F+ NAL  MY++ G L  A  VF+   
Sbjct: 152 LPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEIT 211

Query: 121 R----DEVSYNILIVGYSQTSDCSESLSLFSEMRLL------GMKHDVVSFMGAISACAN 170
           R    D +S+N ++  + + S+   +L LFSEM  +        + D++S +  + ACA+
Sbjct: 212 RKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACAS 271

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           L A+ Q KEIH   IR       FV N+++D Y + G +  A  +F+ +  KD  SWN +
Sbjct: 272 LKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAM 331

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM----- 285
           + GY   G+   A  LF+ MR++ +  D +++ A++   +  G  ++    F +M     
Sbjct: 332 VTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGS 391

Query: 286 QADSVKPTEMHYAC 299
           + +SV    +  AC
Sbjct: 392 EPNSVTIISLLSAC 405


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 163/425 (38%), Positives = 261/425 (61%), Gaps = 11/425 (2%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVR-------EMPIHN 53
            MY+K  +  +A  LF  I  +N+VSW +M+  + QN     AL L +       E+   N
Sbjct: 1186 MYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGN 1245

Query: 54   EFP-NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
              P +SV + +VL AC+R       + +H  +++KG +  + + N L D YAKCG   ++
Sbjct: 1246 NVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVS 1305

Query: 113  QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACAN 170
            + VF+ +  +D++S+N +I  Y+Q+    E+L +F  M R +G++++ V+    + ACA+
Sbjct: 1306 KKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAH 1365

Query: 171  LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
              A++ GK IH   I+  L  ++ V  SI+D Y + GR+++A K FD +  K+  SW  +
Sbjct: 1366 AGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAM 1425

Query: 231  ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-S 289
            + GYGM G    A+++F  M   GV  + ++++++L ACSH GLVE+G  +F+ M+    
Sbjct: 1426 VAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYD 1485

Query: 290  VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAA 349
            ++P   HY CMVDL GRAG + +A  LIK + ++PD  +WG+LLGACRI+ NV+LG  AA
Sbjct: 1486 IEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAA 1545

Query: 350  EHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
            + LF L P +CGYY+LLSN+YA+AG+W +  ++R LMK+R+  K PG S V+ +  V  F
Sbjct: 1546 QKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVF 1605

Query: 410  VVNDR 414
            +V D+
Sbjct: 1606 LVGDK 1610



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 158/353 (44%), Gaps = 33/353 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+   R A A  LF+ I      +WN ++     N L  +AL L + M       +  T
Sbjct: 68  LYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFT 127

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
              V+ AC     +  GK +H  +I+ G + D+F+ N L D Y KCG    A  VF    
Sbjct: 128 FPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMR 187

Query: 118 -----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                        I  ++ VS+  +I GY +     E+L LF  
Sbjct: 188 VRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKR 247

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M+   +  +  + +  I AC  +  +  G+ IH   I+  +   +++  +++D Y++ G 
Sbjct: 248 MQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGS 307

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           I  A ++F+ +P K   +WN++I   G+ G    A+NLF  M    V  D +++I +L A
Sbjct: 308 IKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCA 367

Query: 269 CSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           C H   V++G  YF  M Q   + P   HY CM +L  R+  +++A K  K +
Sbjct: 368 CVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 199/430 (46%), Gaps = 56/430 (13%)

Query: 11   ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
            A++ +  + + N+ SWN+++A+ A+    ++AL+    +      P   +    + +C+ 
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 1154

Query: 71   GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
               L  G+  H +    G   DLF+++AL DMY+KCG L  A+ +F+ I  R+ VS+  +
Sbjct: 1155 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSM 1214

Query: 130  IVGYSQTSDCSESLSLFSEMRLL--------GMKHDVVSFMGAISACANLAAIKQGKEIH 181
            I GY Q      +L LF +             +  D V  +  +SAC+ ++     + +H
Sbjct: 1215 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 1274

Query: 182  GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
            G  ++K     + V N+++D Y + G+  ++ K+FD +  KD  SWN++I  Y   G   
Sbjct: 1275 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 1334

Query: 242  TAINLFEAM-REDGVGYDPVSYIAILTACSHGGL-------------------------- 274
             A+ +F  M R  GV Y+ V+  A+L AC+H G                           
Sbjct: 1335 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSI 1394

Query: 275  ---------VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PV 322
                     VE  KK FD M+  +VK     +  MV   G  G  ++A+ +   +    V
Sbjct: 1395 IDMYCKCGRVEMAKKTFDRMKEKNVK----SWTAMVAGYGMHGRAKEALDIFYKMVRAGV 1450

Query: 323  EPDANIWGALLGACRIYGNVELG-AW--AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA 379
            +P+   + ++L AC   G VE G  W  A +H + ++P    +Y  + +++  AG  +EA
Sbjct: 1451 KPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPG-IEHYGCMVDLFGRAGCLNEA 1509

Query: 380  SKVRELMKSR 389
              + + MK +
Sbjct: 1510 YNLIKRMKMK 1519



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 160/376 (42%), Gaps = 76/376 (20%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQT 136
           ++IHA+IIR GL+ D  LT  L  +Y+  G +  A  +F  I      ++N++I   +  
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               ++L L+  M   G+  D  +F   I AC N  +I  GK +HG  I+      +FV 
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 197 NSILDFYTRSGRI-----------------------------DL--ANKIFDCLPVKDSA 225
           N+++DFY + G                               DL  A +IFD +P K+  
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           SW  +I GY    + + A+ LF+ M+ + +  +  + ++++ AC+  G++  G+   D  
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283

Query: 286 QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP------------------------ 321
             + ++        ++D+  + G ++DA+++ + +P                        
Sbjct: 284 IKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEAL 343

Query: 322 ----------VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG------YYIL 365
                     V+PDA  +  +L AC    NV+ G       F    QH G      +Y  
Sbjct: 344 NLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGC----AYFTRMTQHYGIAPIPEHYEC 399

Query: 366 LSNMYAEAGKWDEASK 381
           ++ +YA +   DEA K
Sbjct: 400 MTELYARSNNLDEAFK 415



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 148/318 (46%), Gaps = 56/318 (17%)

Query: 125  SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
            S+N +I   ++  D  E+L  FS +R LG+     SF   I +C+ L  +  G+  H   
Sbjct: 1109 SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQA 1168

Query: 185  IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
                  T LFV+++++D Y++ G++  A  +FD +P+++  SW ++I GY    + D A+
Sbjct: 1169 FVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNAL 1228

Query: 245  NLF------EAMREDG--VGYDPVSYIAILTACS-----------HGGLVEKG------- 278
             LF      E   EDG  V  D V  +++L+ACS           HG +V+KG       
Sbjct: 1229 LLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGV 1288

Query: 279  -----------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK----LI 317
                             KK FD M+    +  ++ +  M+ +  ++GL  +A++    ++
Sbjct: 1289 GNTLMDAYAKCGQPLVSKKVFDWME----EKDDISWNSMIAVYAQSGLSGEALEVFHGMV 1344

Query: 318  KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH---CGYYILLSNMYAEAG 374
            +++ V  +A    A+L AC   G +  G    + +  +  ++    G  I+  +MY + G
Sbjct: 1345 RHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSII--DMYCKCG 1402

Query: 375  KWDEASKVRELMKSREAK 392
            + + A K  + MK +  K
Sbjct: 1403 RVEMAKKTFDRMKEKNVK 1420



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 51/110 (46%)

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
           N    K  ++IH   IR  L     +   ++  Y+  GRI  A  +F  +    + +WN 
Sbjct: 36  NCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNL 95

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
           +I    + G  + A+ L++ M   G+  D  ++  ++ AC++   ++ GK
Sbjct: 96  IIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGK 145


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 163/412 (39%), Positives = 250/412 (60%), Gaps = 23/412 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  + E+N+VSW +M+A + ++     A++L+++M       + V 
Sbjct: 295 MYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVA 354

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T++L ACAR   L  GK++H  I    +  +LF+ NAL DMYAKCG +  A +VF+ + 
Sbjct: 355 ITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMV 414

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+N +I                       +K D  +    + ACA+L+A+++GKE
Sbjct: 415 VKDIISWNTMIGE---------------------LKPDSRTMACVLPACASLSALERGKE 453

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R    +   VAN+++D Y + G + LA  +FD +P KD  SW  +I GYGM G 
Sbjct: 454 IHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGY 513

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + AI  F  MR+ G+  D VS+I+IL ACSH GL+E+G ++F  M+ D +++P   HYA
Sbjct: 514 GNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYA 573

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLL R G +  A + ++ LP+ PDA IWGALL  CR Y ++EL    AE +F L+P+
Sbjct: 574 CMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPE 633

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
           + GYY+LL+N+YAEA KW+E  ++RE +  +  +KNPGCSW++ + +V  FV
Sbjct: 634 NTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFV 685



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 149/333 (44%), Gaps = 50/333 (15%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA      E   +F  + +KN+  WN MV+ +A+                  +F  S+ L
Sbjct: 144 YATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK----------------IGDFKESICL 187

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR 121
             ++            K I  +  R    F+LF  + L D                   R
Sbjct: 188 FKIMVE----------KGIEGK--RPESAFELF--DKLCD-------------------R 214

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           D +S+N +I GY         L ++ +M  LG+  D+ + +  +  CAN   +  GK +H
Sbjct: 215 DVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVH 274

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
            + I+      +  +N++LD Y++ G +D A ++F+ +  ++  SW ++I GY   G  D
Sbjct: 275 SLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSD 334

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            AI L + M ++GV  D V+  +IL AC+  G ++ GK   D ++A++++        ++
Sbjct: 335 GAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALM 394

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
           D+  + G ME A  +   + V+ D   W  ++G
Sbjct: 395 DMYAKCGSMEAANSVFSTMVVK-DIISWNTMIG 426



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 114/294 (38%), Gaps = 39/294 (13%)

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           YN  I+ + Q  D   ++ L    +   +  +  ++   +  CA L +   GK++H +  
Sbjct: 69  YNAKILHFCQLGDLENAMELICMCQKSEL--ETKTYGSVLQLCAGLKSFTDGKKVHSIIK 126

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
              +     +   ++ FY   G +    ++FD +  K+   WN ++  Y  +G+   +I 
Sbjct: 127 SNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           LF+ M E G+                G   E   + FD++    V    + +  M+    
Sbjct: 187 LFKIMVEKGI---------------EGKRPESAFELFDKLCDRDV----ISWNSMISGYV 227

Query: 306 RAGLMEDAVKLIKN---LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP---QH 359
             GL E  + + K    L ++ D     ++L  C   G + LG   A H   +K    + 
Sbjct: 228 SNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG--KAVHSLAIKSSFERR 285

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQ-----TRDEVQD 408
             +   L +MY++ G  D A +V E M  R        SW       TRD   D
Sbjct: 286 INFSNTLLDMYSKCGDLDGALRVFEKMGERNV-----VSWTSMIAGYTRDGRSD 334


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 166/415 (40%), Positives = 258/415 (62%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A+ +F  + E  IVSW +++A   +  L  +A+ L  EM      P+   
Sbjct: 303 MYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYA 362

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T+V+ ACA  + L  G+E+H  I +  +  +L ++NAL +MYAKCG +  A  +F+ + 
Sbjct: 363 VTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLP 422

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N +I GYSQ S  +E+L LF +M+   +K D V+    + ACA LAA+++G+E
Sbjct: 423 VKNIVSWNTMIGGYSQNSLPNEALQLFLDMQK-QLKPDDVTMACVLPACAGLAALEKGRE 481

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +RK   + L VA +++D Y + G + LA ++FD +P KD   W  +I GYGM G 
Sbjct: 482 IHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGF 541

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AI+ FE MR  G+  +  S+ +IL AC+H GL+++G K FD M+++ +++P   HYA
Sbjct: 542 GKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYA 601

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLL R+G +  A K I+ +P++PDA IWGALL  CRI+ +VEL    AEH+F L+P+
Sbjct: 602 CMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPE 661

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +  YY+LL+N+YAEA KW+E  K++  +     K + GCSW++ + +   F   D
Sbjct: 662 NTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGKFNIFFAGD 716



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 160/336 (47%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY       +   +F  I    I  WN +++ +A+     +++ L  +M       +S T
Sbjct: 101 MYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYT 160

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T VL   A    +R  K +H  +++ G      + N+L   Y KCG +  A+ +F+ +S
Sbjct: 161 FTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELS 220

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N +I G +        L  F +M  LG+  D  + +  + ACAN+  +  G+ 
Sbjct: 221 DRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRA 280

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++      +   N++LD Y++ G ++ AN++F  +      SW ++I  +   G 
Sbjct: 281 LHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGL 340

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              AI LF+ M+  G+  D  +  +++ AC+    ++KG++  + ++ +++         
Sbjct: 341 HYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNA 400

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++++  + G ME+A  +   LPV+   + W  ++G 
Sbjct: 401 LMNMYAKCGSMEEANLIFSQLPVKNIVS-WNTMIGG 435



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 1/221 (0%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           T  +VL  CA    L  GK +H+ I   G+  D  L   L  MY  CG L   + +F+  
Sbjct: 59  TYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGI 118

Query: 120 FRDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             D++  +N+L+  Y++  +  ES+ LF +M+ LG++ D  +F   +   A  A +++ K
Sbjct: 119 LNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECK 178

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +HG  ++    ++  V NS++  Y + G ++ A  +FD L  +D  SWN++I G  M G
Sbjct: 179 RVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNG 238

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
                +  F  M   GV  D  + + +L AC++ G +  G+
Sbjct: 239 FSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGR 279



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 121/298 (40%), Gaps = 45/298 (15%)

Query: 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGV 183
           V  N  I  + +  D   ++ L S  R    + ++ ++   +  CA L +++ GK +H +
Sbjct: 25  VDKNAKICKFCEMGDLRNAMKLLS--RSQRSELELNTYCSVLQLCAELKSLEDGKRVHSI 82

Query: 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
                +     +   ++  Y   G +    +IFD +       WN L+  Y  +G    +
Sbjct: 83  ISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRES 142

Query: 244 INLFEAMREDGVGYDPVSYIAILTACS-----------HG-------------------- 272
           + LFE M+E G+  D  ++  +L   +           HG                    
Sbjct: 143 VGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAA 202

Query: 273 ----GLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
               G VE  +  FDE+   D V    M   C ++   R GL E  ++++ NL V+ D+ 
Sbjct: 203 YFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGL-EFFIQML-NLGVDVDSA 260

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDEASKV 382
               +L AC   GN+ LG   A H + +K    G  +    L +MY++ G  + A++V
Sbjct: 261 TLVNVLVACANVGNLTLG--RALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEV 316


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  317 bits (813), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 172/416 (41%), Positives = 248/416 (59%), Gaps = 2/416 (0%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MY   +R   AS +F +I       WN M+  FA +   L +L+L  +M      P+   
Sbjct: 761  MYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFA 820

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
                L +CA    L+ GK IH  ++  G + DLF+  AL DMYAKCG +  A+ VF+ ++
Sbjct: 821  FPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMA 880

Query: 120  FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             RD VS+  +I GY+     SE+L  F  MR  G+  + VS +  + AC NL A+++G+ 
Sbjct: 881  VRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEW 940

Query: 180  IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
             H   I+      + VA +I+D Y++ G +DLA  +FD    KD   W+ +I  YG+ G 
Sbjct: 941  FHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGH 1000

Query: 240  VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HYA 298
               AI+LF+ M + GV    V++  +L+ACSH GL+E+GK YF  M  + V   ++ +YA
Sbjct: 1001 GRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYA 1060

Query: 299  CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            CMVDLLGRAG + +AV LI+N+PVEPDA+IWG+LLGACRI+ N++L    A+HLF L P 
Sbjct: 1061 CMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPV 1120

Query: 359  HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            H GY++LLSN+YA   +W+E  KVR++M  R A K  G S V+  ++V  F V DR
Sbjct: 1121 HAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDR 1176



 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/417 (38%), Positives = 250/417 (59%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK+     A+ LF  + EK+++SW+ M+A +A N    +AL L  EM      PNSVT
Sbjct: 250 LYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVT 309

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + + L ACA    L  GK+IH   + KG   D  ++ AL DMY KC C + A ++F  + 
Sbjct: 310 VVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLP 369

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+  L+ GY+Q     +S+ +F  M   G++ D V+ +  ++A + L   +Q   
Sbjct: 370 KKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALC 429

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  +R   ++++FV  S+++ Y++ G +  A K+F  + V+D   W+++I  YG+ G 
Sbjct: 430 LHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGR 489

Query: 240 VDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
              A+ +F+ M +   V  + V++++IL+ACSH GLVE+G K FD M  D  ++P   H+
Sbjct: 490 GGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHF 549

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
             MVDLLGR G +  A+ +I  +P+    ++WGALLGACRI+ N+E+G  AA++LF L P
Sbjct: 550 GIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDP 609

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            H GYYILLSN+YA  GKWD  +++R  +K R  KK  G S V+ R  V  F+ +DR
Sbjct: 610 SHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDR 666



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 175/340 (51%), Gaps = 11/340 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP-IHNEFPNSV 59
           +YAK +    A  +F      N+  WN+ + ++ + +   + L+L   M     E P++ 
Sbjct: 45  LYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNF 104

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
           T+   L ACA    L  GK IH    +   +  D+F+ +AL ++Y+KCG +  A  VF  
Sbjct: 105 TIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEE 164

Query: 119 SFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQ 176
             R D V +  ++ GY Q +D  E+L+LFS+M ++  +  D V+ +  +SACA L  +K 
Sbjct: 165 FQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKA 224

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G  +HG+ IR+     L + NS+L+ Y ++G   +A  +F  +P KD  SW+T+I  Y  
Sbjct: 225 GSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYAN 284

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
               + A+NLF  M E     + V+ ++ L AC+    +E+GKK     +    K  E+ 
Sbjct: 285 NEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIH---KIAVWKGFELD 341

Query: 297 YA---CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           ++    ++D+  +    ++AV L + LP + D   W ALL
Sbjct: 342 FSVSTALIDMYMKCSCPDEAVDLFQRLP-KKDVVSWVALL 380



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 149/312 (47%), Gaps = 5/312 (1%)

Query: 78   KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQT 136
            K+ HA+I   GL +D  +      MY     ++ A  VF +I       +N++I G++  
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 137  SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
                 SL L+S+M   G+K D  +F  A+ +CA L+ +++GK IH   +       LFV 
Sbjct: 797  GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVD 856

Query: 197  NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
             +++D Y + G I+ A  +FD + V+D  SW ++I GY   G     +  F+ MR  GV 
Sbjct: 857  AALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI 916

Query: 257  YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
             + VS +++L AC + G + KG+ +   +     +   +    ++D+  + G + D  + 
Sbjct: 917  PNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSL-DLARC 975

Query: 317  IKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--LKPQHCGYYILLSNMYAEAG 374
            + +     D   W A++ +  I+G+        + +    ++P H  +  +LS   + +G
Sbjct: 976  LFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSAC-SHSG 1034

Query: 375  KWDEASKVRELM 386
              +E     +LM
Sbjct: 1035 LLEEGKMYFQLM 1046



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 135/288 (46%), Gaps = 11/288 (3%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
            L ++  AC  G   R   ++H+++ + G+  D F    L  +YAKC  L  A+ VF+ +
Sbjct: 6   VLVDLFQACNNG---RSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDET 62

Query: 120 FRDEVS-YNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAAIKQG 177
               V  +N  +  Y +     E+L LF  M    G   D  +   A+ ACA L  ++ G
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 178 KEIHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           K IHG   +   + + +FV +++++ Y++ G++  A K+F+     D+  W +++ GY  
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 237 LGEVDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             + + A+ LF  M   D V  DPV+ +++++AC+    V+ G      +          
Sbjct: 183 NNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLP 242

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
               +++L  + G  + A  L   +P E D   W  ++ AC  Y N E
Sbjct: 243 LVNSLLNLYAKTGCEKIAANLFSKMP-EKDVISWSTMI-AC--YANNE 286


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  317 bits (813), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 162/417 (38%), Positives = 259/417 (62%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  +  +++VSWN+++A + QN   + A     +M ++   P+ +T
Sbjct: 317 MYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLT 376

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFD-LFLTNALTDMYAKCGCLNLAQNVFN-I 118
           L ++    A+    +  + +H  I+R+G   + + + NA+ DMYAK G ++ A  VFN I
Sbjct: 377 LVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLI 436

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMR-LLGMKHDVVSFMGAISACANLAAIKQG 177
             +D VS+N LI GY+Q    SE++ ++  M     +K +  +++  ++A A++ A++QG
Sbjct: 437 PVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQG 496

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
             IHG  I+ +LH  +FV   ++D Y + GR+  A  +F  +P + S  WN +I  +G+ 
Sbjct: 497 MRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIH 556

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G  + A+ LF  M+++GV  D V++I++L+ACSH GLV++GK +F  MQ   +KP+  HY
Sbjct: 557 GHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHY 616

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLLGRAG +E A   IK++P+ PDA+IWGALLGACRI+GN+ELG +A++ LF +  
Sbjct: 617 GCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDS 676

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           ++ GYY+LLSN+YA  GKW+   KVR L + R  KK PG S ++    V  F   ++
Sbjct: 677 ENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQ 733



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 173/348 (49%), Gaps = 27/348 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +YA     + +   F  I  K++ +WN+M++ + +N    +A+    ++ +  +F  +  
Sbjct: 117 LYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFY 176

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   VL AC     L  G++IH  + + G  +D+F+  +L  MY++ G + +A+++F+ +
Sbjct: 177 TFPPVLKACQT---LVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDM 233

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            FRD  S+N +I G  Q  + +++L +  EMRL G+  D V+    +  CA L  I    
Sbjct: 234 PFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTAT 293

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH   I+  L   LFV+N++++ Y + G +  A K+F  + ++D  SWN++I  Y    
Sbjct: 294 LIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQND 353

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQA 287
           +  TA   F  M+ +G+  D ++ +++ +  +           HG ++ +G      M+A
Sbjct: 354 DPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWL----MEA 409

Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
             +    M      D+  + G+++ A K+   +PV+ D   W  L+  
Sbjct: 410 VVIGNAVM------DMYAKLGVIDSAHKVFNLIPVK-DVVSWNTLISG 450



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 137/293 (46%), Gaps = 12/293 (4%)

Query: 48  EMPIHNEFP---NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104
           ++P H   P     +   ++  +C +       K +HA ++  G     F++  L ++YA
Sbjct: 63  QIPFHWRQPAKNEEIDFNSLFDSCTKTLL---AKRLHALLVVSGKIQSNFISIRLVNLYA 119

Query: 105 KCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFM 162
             G ++L++  F+ I  +D  ++N +I  Y +     E++  F ++ L+   + D  +F 
Sbjct: 120 SLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFP 179

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
             + AC  L     G++IH    +      +FVA S++  Y+R G + +A  +FD +P +
Sbjct: 180 PVLKACQTLV---DGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFR 236

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282
           D  SWN +I G    G    A+++ + MR +G+  D V+  +IL  C+  G +       
Sbjct: 237 DMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIH 296

Query: 283 DEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
             +    ++        ++++  + G + DA K+ + + +  D   W +++ A
Sbjct: 297 LYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLR-DVVSWNSIIAA 348



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 8/188 (4%)

Query: 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANK 214
           K++ + F     +C         K +H + +        F++  +++ Y   G + L+  
Sbjct: 73  KNEEIDFNSLFDSCTKTLL---AKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRG 129

Query: 215 IFDCLPVKDSASWNTLILGYGMLGEVDTAINLF-EAMREDGVGYDPVSYIAILTACSHGG 273
            FD +  KD  +WN++I  Y   G    AI+ F + +       D  ++  +L AC    
Sbjct: 130 TFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQ--T 187

Query: 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           LV+ G+K    +     +      A ++ +  R G +  A  L  ++P   D   W A++
Sbjct: 188 LVD-GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFR-DMGSWNAMI 245

Query: 334 GACRIYGN 341
                 GN
Sbjct: 246 SGLIQNGN 253


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  317 bits (813), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 156/418 (37%), Positives = 252/418 (60%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A ++F  + E+N+VSW AM++ ++Q     +AL L  +M   +  PN  T
Sbjct: 54  LYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFT 113

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL +C        G++IH+ I ++     +F+ ++L DMYAK G ++ A+ VF  + 
Sbjct: 114 FATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLP 173

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS   +I GY+Q     E+L LF  ++  GM  + V++   ++A + LAA+  GK+
Sbjct: 174 ERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQ 233

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +R  L  ++ + NS++D Y++ G ++ A KIF+ +PV+   SWN +++GY   G+
Sbjct: 234 VHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGK 293

Query: 240 VDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ--ADSVKPTEMH 296
               + LF+ MRE+  V  D V+++A+L+ CSHGGL +KG + FDEM    D ++    H
Sbjct: 294 GIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEH 353

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y C++DLLGRAG +E+A +LIK +P EP A IWG+LLGACR++ N  +G +    L  ++
Sbjct: 354 YGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIE 413

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P++ G Y++LSN+YA AG+W++   VRELM  +   K PG SW++    +  F  +DR
Sbjct: 414 PENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDR 471



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 146/271 (53%), Gaps = 2/271 (0%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L  C     +R G+ +HA +I+      ++L+  L  +Y KC CL  A++VF+ +  R+
Sbjct: 16  LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERN 75

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            VS+  +I GYSQ    SE+L LF +M     + +  +F   +S+C   +  + G++IH 
Sbjct: 76  VVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHS 135

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
              +++   H+FV +S+LD Y ++GRI  A  +F+CLP +D  S   +I GY  LG  + 
Sbjct: 136 HIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 195

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
           A+ LF  ++ +G+  + V+Y ++LTA S    ++ GK+    +    +    +    ++D
Sbjct: 196 ALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLID 255

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +  + G +  A K+  N+PV    + W A+L
Sbjct: 256 MYSKCGNLNYARKIFNNMPVRTVIS-WNAML 285


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  317 bits (813), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 165/427 (38%), Positives = 263/427 (61%), Gaps = 15/427 (3%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVR-------EMPIHN 53
            MY+K  +  +A  LF  I  +N+VSW +M+  + QN     AL L +       E+   N
Sbjct: 2059 MYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGN 2118

Query: 54   EFP-NSVTLTNVLPACAR--GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN 110
              P +SV + +VL AC+R  G  +  G  +H  +++KG +  + + N L D YAKCG   
Sbjct: 2119 NVPLDSVVMVSVLSACSRVSGKGITEG--VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPL 2176

Query: 111  LAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISAC 168
            +++ VF+ +  +D++S+N +I  Y+Q+    E+L +F  M R +G++++ V+    + AC
Sbjct: 2177 VSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLAC 2236

Query: 169  ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
            A+  A++ GK IH   I+  L  ++ V  SI+D Y + GR+++A K FD +  K+  SW 
Sbjct: 2237 AHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWT 2296

Query: 229  TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
             ++ GYGM G    A+++F  M   GV  + ++++++L ACSH GLVE+G  +F+ M+  
Sbjct: 2297 AMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHK 2356

Query: 289  -SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAW 347
              ++P   HY CMVDL GRAG + +A  LIK + ++PD  +WG+LLGACRI+ NV+LG  
Sbjct: 2357 YDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEI 2416

Query: 348  AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQ 407
            AA+ LF L P +CGYY+LLSN+YA+AG+W +  ++R LMK+R+  K PG S V+ +  V 
Sbjct: 2417 AAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVH 2476

Query: 408  DFVVNDR 414
             F+V D+
Sbjct: 2477 VFLVGDK 2483



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 158/353 (44%), Gaps = 33/353 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+   R A A  LF+ I      +WN ++     N L  +AL L + M       +  T
Sbjct: 68  LYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFT 127

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
              V+ AC     +  GK +H  +I+ G + D+F+ N L D Y KCG    A  VF    
Sbjct: 128 FPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMR 187

Query: 118 -----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                        I  ++ VS+  +I GY +     E+L LF  
Sbjct: 188 VRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKR 247

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M+   +  +  + +  I AC  +  +  G+ IH   I+  +   +++  +++D Y++ G 
Sbjct: 248 MQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGS 307

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           I  A ++F+ +P K   +WN++I   G+ G    A+NLF  M    V  D +++I +L A
Sbjct: 308 IKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCA 367

Query: 269 CSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           C H   V++G  YF  M Q   + P   HY CM +L  R+  +++A K  K +
Sbjct: 368 CVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 199/430 (46%), Gaps = 56/430 (13%)

Query: 11   ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
            A++ +  + + N+ SWN+++A+ A+    ++AL+    +      P   +    + +C+ 
Sbjct: 1968 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 2027

Query: 71   GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
               L  G+  H +    G   DLF+++AL DMY+KCG L  A+ +F+ I  R+ VS+  +
Sbjct: 2028 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSM 2087

Query: 130  IVGYSQTSDCSESLSLFSEMRLL--------GMKHDVVSFMGAISACANLAAIKQGKEIH 181
            I GY Q      +L LF +             +  D V  +  +SAC+ ++     + +H
Sbjct: 2088 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 2147

Query: 182  GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
            G  ++K     + V N+++D Y + G+  ++ K+FD +  KD  SWN++I  Y   G   
Sbjct: 2148 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 2207

Query: 242  TAINLFEAM-REDGVGYDPVSYIAILTACSHGGL-------------------------- 274
             A+ +F  M R  GV Y+ V+  A+L AC+H G                           
Sbjct: 2208 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSI 2267

Query: 275  ---------VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PV 322
                     VE  KK FD M+  +VK     +  MV   G  G  ++A+ +   +    V
Sbjct: 2268 IDMYCKCGRVEMAKKTFDRMKEKNVKS----WTAMVAGYGMHGRAKEALDIFYKMVRAGV 2323

Query: 323  EPDANIWGALLGACRIYGNVELG-AW--AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA 379
            +P+   + ++L AC   G VE G  W  A +H + ++P    +Y  + +++  AG  +EA
Sbjct: 2324 KPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPG-IEHYGCMVDLFGRAGCLNEA 2382

Query: 380  SKVRELMKSR 389
              + + MK +
Sbjct: 2383 YNLIKRMKMK 2392



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 160/376 (42%), Gaps = 76/376 (20%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQT 136
           ++IHA+IIR GL+ D  LT  L  +Y+  G +  A  +F  I      ++N++I   +  
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               ++L L+  M   G+  D  +F   I AC N  +I  GK +HG  I+      +FV 
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 197 NSILDFYTRSGRI-----------------------------DL--ANKIFDCLPVKDSA 225
           N+++DFY + G                               DL  A +IFD +P K+  
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           SW  +I GY    + + A+ LF+ M+ + +  +  + ++++ AC+  G++  G+   D  
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283

Query: 286 QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP------------------------ 321
             + ++        ++D+  + G ++DA+++ + +P                        
Sbjct: 284 IKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEAL 343

Query: 322 ----------VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG------YYIL 365
                     V+PDA  +  +L AC    NV+ G       F    QH G      +Y  
Sbjct: 344 NLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGC----AYFTRMTQHYGIAPIPEHYEC 399

Query: 366 LSNMYAEAGKWDEASK 381
           ++ +YA +   DEA K
Sbjct: 400 MTELYARSNNLDEAFK 415



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 148/318 (46%), Gaps = 56/318 (17%)

Query: 125  SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
            S+N +I   ++  D  E+L  FS +R LG+     SF   I +C+ L  +  G+  H   
Sbjct: 1982 SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQA 2041

Query: 185  IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
                  T LFV+++++D Y++ G++  A  +FD +P+++  SW ++I GY    + D A+
Sbjct: 2042 FVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNAL 2101

Query: 245  NLF------EAMREDG--VGYDPVSYIAILTACS-----------HGGLVEKG------- 278
             LF      E   EDG  V  D V  +++L+ACS           HG +V+KG       
Sbjct: 2102 LLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGV 2161

Query: 279  -----------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK----LI 317
                             KK FD M+    +  ++ +  M+ +  ++GL  +A++    ++
Sbjct: 2162 GNTLMDAYAKCGQPLVSKKVFDWME----EKDDISWNSMIAVYAQSGLSGEALEVFHGMV 2217

Query: 318  KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH---CGYYILLSNMYAEAG 374
            +++ V  +A    A+L AC   G +  G    + +  +  ++    G  I+  +MY + G
Sbjct: 2218 RHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSII--DMYCKCG 2275

Query: 375  KWDEASKVRELMKSREAK 392
            + + A K  + MK +  K
Sbjct: 2276 RVEMAKKTFDRMKEKNVK 2293



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 14/125 (11%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           +  C N   ++Q   IH   IR  L     +   ++  Y+  GRI  A  +F  +    +
Sbjct: 34  LQNCKNFKHLRQ---IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCT 90

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGG 273
            +WN +I    + G  + A+ L++ M   G+  D  ++  ++ AC+           HG 
Sbjct: 91  FTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGS 150

Query: 274 LVEKG 278
           L++ G
Sbjct: 151 LIKYG 155


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  317 bits (813), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 170/463 (36%), Positives = 269/463 (58%), Gaps = 49/463 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMV------------------------------ 30
           MYAK S+  EA+ +F  I +K++VSWNAMV                              
Sbjct: 278 MYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVIT 337

Query: 31  -----ANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
                A +AQ     +AL + R+M ++   PN VTL ++L  CA    L  GK+ HA +I
Sbjct: 338 WSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVI 397

Query: 86  RKGLNF-------DLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDE--VSYNILIVGYSQ 135
           +  LN        DL + N L DMYAKC    +A+++F+ I  +D+  V++ ++I GY+Q
Sbjct: 398 KNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQ 457

Query: 136 TSDCSESLSLFSEM--RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH- 192
             + +++L LF+++  +   +K +  +   A+ ACA L  ++ G+++H   +R    +  
Sbjct: 458 HGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEV 517

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           L+V N ++D Y++SG ID A  +FD + +++  SW +L+ GYGM G  + A++LF+ M++
Sbjct: 518 LYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQK 577

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLME 311
            G   D ++++ +L ACSH G+V++G  YF +M +   + P   HYACMVDLLGRAG + 
Sbjct: 578 LGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLN 637

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371
           +A++LIKN+ +EP A +W ALL A RI+ N+ELG +AA  L  L  ++ G Y LLSN+YA
Sbjct: 638 EAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYA 697

Query: 372 EAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            A +W + +++R LMK    +K PGCSW+Q +     F V DR
Sbjct: 698 NARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDR 740



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 164/332 (49%), Gaps = 13/332 (3%)

Query: 2   YAKSSRPAEASYLFHNI--AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           Y +    AEA  L   +  +   +  WNA++    +  L    L    +M      P+  
Sbjct: 69  YIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHY 128

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
           T   VL AC     LR G  +HA +   GL  ++F+ N++  MY +CG L+ A  +F+  
Sbjct: 129 TFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEV 188

Query: 118 --ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM---RLLGMKHDVVSFMGAISACANLA 172
                 D VS+N ++  Y Q      +L +   M     L ++ D ++ +  + ACA++ 
Sbjct: 189 LERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVF 248

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           A++ GK++HG ++R  L   +FV N+++  Y +  +++ ANK+F+ +  KD  SWN ++ 
Sbjct: 249 ALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVT 308

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
           GY  +G  D+A++LF+ M+E+ +  D +++ A++   +  G   +    F +MQ   ++P
Sbjct: 309 GYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEP 368

Query: 293 TEMHYACMVDLLGRAGLM----EDAVKLIKNL 320
             +  A ++      G +    +    +IKN+
Sbjct: 369 NVVTLASLLSGCASVGALLYGKQTHAYVIKNI 400


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  317 bits (812), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 154/418 (36%), Positives = 251/418 (60%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     +A  +   + E+N+VSW AM++ ++Q     +AL L  EM +    PN  T
Sbjct: 54  LYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFT 113

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL +C      + G++IH+ +I+      +F+ ++L DMYAK G +  A+ VF+ + 
Sbjct: 114 FATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 173

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS   +I GY+Q     E+L LF  ++  GM+ + V++   ++A + LAA+  G++
Sbjct: 174 ERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQ 233

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +R  L  ++ + NS++D Y++ G +  + +IFD +P +   SWN +++GY   G 
Sbjct: 234 VHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGL 293

Query: 240 VDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEM--QADSVKPTEMH 296
              A+ LF+ M+E+  V  D V+++A+L+ CSHGG+ ++G + F EM  Q D  +P   H
Sbjct: 294 GREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEH 353

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y C+VDL GRAG +E+A + IK +P EP A IWG+LLGACR++ NV +G + A  L  ++
Sbjct: 354 YGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIE 413

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            ++ G Y++LSN+YA AG+WD+   VRELMK +   K PG SW++    +  F  +DR
Sbjct: 414 SENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDR 471



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 158/298 (53%), Gaps = 5/298 (1%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           +VL  C     +R G+ +HA +I+      ++L   L  +Y KC CL  A+ V + +  R
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 74

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + VS+  +I GYSQ    SE+L LF EM + G   +  +F   +++C + +  + G++IH
Sbjct: 75  NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIH 134

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
            + I+    +H+FV +S+LD Y ++G+I  A ++FD LP +D  S   +I GY  LG  +
Sbjct: 135 SLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDE 194

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            A++LF  ++ +G+  + V+Y ++LTA S    ++ G++    +    +    +    ++
Sbjct: 195 EALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLI 254

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           D+  + G +  + ++  ++P E     W A+L     +G   LG  A E   ++K ++
Sbjct: 255 DMYSKCGSLTYSRRIFDSMP-ERTVISWNAMLVGYSKHG---LGREAVELFKLMKEEN 308



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/173 (19%), Positives = 82/173 (47%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M + G++ +   +   ++ C +  AI++G+ +H   I+      +++   ++  Y +   
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +  A ++ D +P ++  SW  +I GY   G    A++LF  M   G   +  ++  +LT+
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
           C+     + G++    +   S +      + ++D+  +AG + +A ++   LP
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 173


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  317 bits (812), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 157/416 (37%), Positives = 258/416 (62%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK      A  LF  ++ +++V+W A++  ++Q+     AL L+ EM      PN  T
Sbjct: 59  LYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFT 118

Query: 61  LTNVLPACAR--GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
           L ++L A +      +  G+++H   +R G + +++++ A+ DMYA+C  L  AQ +F++
Sbjct: 119 LASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDV 178

Query: 119 SF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              ++EVS+N LI GY++     ++  LFS M    +K    ++   + ACA++ +++QG
Sbjct: 179 MVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQG 238

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K +H + I+       FV N++LD Y +SG I+ A K+FD L  +D  SWN+++ GY   
Sbjct: 239 KWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQH 298

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G    A+  FE M    +  + ++++ +LTACSH GL+++G+ YFD M+  +V+P   HY
Sbjct: 299 GLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHY 358

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
             MVDLLGRAG ++ A++ I  +P++P A +WGALLGACR++ N+ELG +AAE +F L  
Sbjct: 359 VTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDS 418

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            + G ++LL N+YA AG+W++A+KVR++MK    KK P CSWV+  +EV  FV +D
Sbjct: 419 HYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADD 474



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 175/350 (50%), Gaps = 8/350 (2%)

Query: 43  LQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDM 102
           ++L+R+   +N     +  T +L  C   + L  GK IHA ++      DL + N L ++
Sbjct: 1   MELIRQQCKNNAGAREICHT-LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNL 59

Query: 103 YAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
           YAKCG L  A+ +F+ +S RD V++  LI GYSQ     ++L L  EM  +G+K +  + 
Sbjct: 60  YAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTL 119

Query: 162 MGAISACANLAA--IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
              + A + + +  + QG+++HG+ +R    ++++V+ +ILD Y R   ++ A  IFD +
Sbjct: 120 ASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVM 179

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
             K+  SWN LI GY   G+ D A  LF  M  + V     +Y ++L AC+  G +E+GK
Sbjct: 180 VSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGK 239

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
                M     K        ++D+  ++G +EDA K+   L  + D   W ++L     +
Sbjct: 240 WVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRL-AKRDVVSWNSMLTGYSQH 298

Query: 340 GNVELGAWAAEHLFMLK--PQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           G  ++     E +   +  P    +  +L+   + AG  DE     ++MK
Sbjct: 299 GLGKVALQRFEEMLRTRIAPNDITFLCVLTAC-SHAGLLDEGRHYFDMMK 347


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  317 bits (811), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 163/414 (39%), Positives = 245/414 (59%), Gaps = 2/414 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK S    A  +F  +  K + SWNA++   AQN    K+L L   M      P+  T+
Sbjct: 446 YAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTI 505

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++L ACAR  FLR GKEIH  ++R GL  D F+  +L  +Y +C  + L + +F+ +  
Sbjct: 506 GSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMEN 565

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  V +N++I G+SQ     E+L  F +M   G+K   ++  G + AC+ ++A++ GKE+
Sbjct: 566 KSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEV 625

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++ HL    FV  +++D Y + G ++ +  IFD +  KD A WN +I GYG+ G  
Sbjct: 626 HSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHG 685

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYAC 299
             AI LFE M+  G   D  +++ +L AC+H GLV +G KY  +MQ    VKP   HYAC
Sbjct: 686 LKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYAC 745

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VD+LGRAG + +A+KL+  +P EPD+ IW +LL +CR YG++E+G   ++ L  L+P  
Sbjct: 746 VVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNK 805

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
              Y+LLSN+YA  GKWDE  KVR+ MK     K+ GCSW++    V  F+V+D
Sbjct: 806 AENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSD 859



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 144/278 (51%), Gaps = 10/278 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MY+    P+++  +F    EK++  +NA+++ +++N L   A+ L  E+    +  P++ 
Sbjct: 137 MYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNF 196

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           TL  V  ACA    +  G+ +HA  ++ G   D F+ NAL  MY KCG +  A  VF  +
Sbjct: 197 TLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETM 256

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-----GMKHDVVSFMGAISACANLAA 173
             R+ VS+N ++   S+     E   +F   RLL     G+  DV + +  I ACA +  
Sbjct: 257 RNRNLVSWNSVMYACSENGGFGECCGVFK--RLLISEEEGLVPDVATMVTVIPACAAVGE 314

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           ++ G  +HG+  +  +   + V NS++D Y++ G +  A  +FD    K+  SWNT+I G
Sbjct: 315 VRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWG 374

Query: 234 YGMLGEVDTAINLFEAM-REDGVGYDPVSYIAILTACS 270
           Y   G+      L + M RE+ V  + V+ + +L ACS
Sbjct: 375 YSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 131/240 (54%), Gaps = 15/240 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y + S       +F  +  K++V WN M+  F+QN L  +AL   R+M      P  + 
Sbjct: 546 LYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIA 605

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T VL AC++   LR GKE+H+  ++  L+ D F+T AL DMYAKCGC+  +QN+F+ ++
Sbjct: 606 VTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVN 665

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
            +DE  +N++I GY       +++ LF  M+  G + D  +F+G + AC +   + +G  
Sbjct: 666 EKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLK 725

Query: 178 -----KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
                + ++GV  +   +        ++D   R+G++  A K+ + +P + DS  W++L+
Sbjct: 726 YLGQMQNLYGVKPKLEHYA------CVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLL 779



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 155/319 (48%), Gaps = 13/319 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE---FPN 57
           MY K      A  +F  +  +N+VSWN+++   ++N    +   + + + I  E    P+
Sbjct: 239 MYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPD 298

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             T+  V+PACA    +R G  +H    + G+  ++ + N+L DMY+KCG L  A+ +F+
Sbjct: 299 VATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFD 358

Query: 118 ISF-RDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIK 175
           ++  ++ VS+N +I GYS+  D      L  EM R   ++ + V+ +  + AC+    + 
Sbjct: 359 MNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLL 418

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
             KEIHG   R        VAN+ +  Y +   +D A ++F  +  K  +SWN LI  + 
Sbjct: 419 SLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHA 478

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE- 294
             G    +++LF  M + G+  D  +  ++L AC+    +  GK+    M  + ++  E 
Sbjct: 479 QNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEF 538

Query: 295 -------MHYACMVDLLGR 306
                  ++  C   LLG+
Sbjct: 539 IGISLMSLYIQCSSMLLGK 557



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 64  VLPACARGHFLRPGKEIHARI-IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF-R 121
           +L AC     +  G+++HA +     L  D+ L+  +  MY+ CG  + ++ VF+ +  +
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           D   YN L+ GYS+ +   +++SLF E +    +  D  +      ACA +A ++ G+ +
Sbjct: 158 DLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAV 217

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H + ++    +  FV N+++  Y + G ++ A K+F+ +  ++  SWN+++      G  
Sbjct: 218 HALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGF 277

Query: 241 DTAINLFEAM---REDGVGYDPVSYIAILTACSHGGLVEKG 278
                +F+ +    E+G+  D  + + ++ AC+  G V  G
Sbjct: 278 GECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMG 318



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 11/178 (6%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
           + AC +   I  G+++H +    H L   + ++  I+  Y+  G    +  +FD    KD
Sbjct: 99  LRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKD 158

Query: 224 SASWNTLILGYGMLGEVDTAINLF-EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282
              +N L+ GY        AI+LF E +    +  D  +   +  AC+    VE G    
Sbjct: 159 LFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELG---- 214

Query: 283 DEMQADSVKPTEMHYA----CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
           + + A ++K      A     ++ + G+ G +E AVK+ + +    +   W +++ AC
Sbjct: 215 EAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMR-NRNLVSWNSVMYAC 271


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  317 bits (811), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 158/413 (38%), Positives = 244/413 (59%), Gaps = 1/413 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K +R      LF  +  KNI+SW  M++ + QN  + +A++L  EM      P+    
Sbjct: 297 YTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFAC 356

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
           T+VL +C     L  G+++HA  I+  L  D F+ N L DMYAK   L  A+ VF++ + 
Sbjct: 357 TSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAE 416

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ +SYN +I GYS     SE+L LF EMR+   K +  +F   I+A +NLA+++ G++ 
Sbjct: 417 QNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQF 476

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++  L    FV N+++D Y + G I+ A K+F+    +D   WN++I  +   GE 
Sbjct: 477 HNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEA 536

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           + A+ +F  M ++G+  + V+++A+L+ACSH G VE G  +F+ M    +KP   HYAC+
Sbjct: 537 EEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYACV 596

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           V LLGR+G + +A + I+ +P+EP A +W +LL ACRI GNVELG +AAE      P+  
Sbjct: 597 VSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDS 656

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           G YILLSN++A  G W +  KVR+ M S E  K PG SW++  ++V  F+  D
Sbjct: 657 GSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARD 709



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 193/369 (52%), Gaps = 4/369 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K+    EA  +F  ++EK  V+W  ++A + +      +L+L  +M   N  P+   +
Sbjct: 196 YSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVV 255

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           ++VL AC+   FL  GK+IHA ++R+G   D+ + N L D Y KC  +   + +F+ +  
Sbjct: 256 SSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVV 315

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ +S+  +I GY Q S   E++ LF EM  LG K D  +    +++C +  A++QG+++
Sbjct: 316 KNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQV 375

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H  TI+ +L +  FV N ++D Y +S  +  A K+FD +  ++  S+N +I GY    ++
Sbjct: 376 HAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKL 435

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A+ LF  MR      +  ++ A++TA S+   +  G+++ +++    +         +
Sbjct: 436 SEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNAL 495

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE--LGAWAAEHLFMLKPQ 358
           VD+  + G +E+A K+  N  +  D   W +++     +G  E  LG +       ++P 
Sbjct: 496 VDMYAKCGSIEEARKMF-NSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPN 554

Query: 359 HCGYYILLS 367
           +  +  +LS
Sbjct: 555 YVTFVAVLS 563



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 170/317 (53%), Gaps = 4/317 (1%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN-EFPNSVTL 61
           +KS R   A  +F  +  KN+++W++MV+ ++Q     +AL +  ++   + E PN   L
Sbjct: 95  SKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVL 154

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            +V+ AC +   +  G ++H  ++R G + D+++  +L D Y+K G +  A+ VF+ +S 
Sbjct: 155 ASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSE 214

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  V++  +I GY++    + SL LF++MR   +  D       +SAC+ L  ++ GK+I
Sbjct: 215 KTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQI 274

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   +R+     + V N ++DFYT+  R+    K+FD + VK+  SW T+I GY M    
Sbjct: 275 HAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGY-MQNSF 333

Query: 241 D-TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           D  A+ LF  M   G   D  +  ++LT+C     +E+G++        +++  E     
Sbjct: 334 DWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNG 393

Query: 300 MVDLLGRAGLMEDAVKL 316
           ++D+  ++ L+ DA K+
Sbjct: 394 LIDMYAKSNLLIDAKKV 410



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 159/299 (53%), Gaps = 17/299 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS+   +A  +F  +AE+N++S+NAM+  ++      +AL+L  EM +  + PN  T
Sbjct: 397 MYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFT 456

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS- 119
              ++ A +    LR G++ H ++++ GL+F  F+TNAL DMYAKCG +  A+ +FN S 
Sbjct: 457 FAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSI 516

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
           +RD V +N +I  ++Q  +  E+L +F EM   G++ + V+F+  +SAC++   ++ G  
Sbjct: 517 WRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLN 576

Query: 178 --KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA-SWNTLILGY 234
               + G  I+     +      ++    RSG++  A +  + +P++ +A  W +L+   
Sbjct: 577 HFNSMPGFGIKPGTEHYA----CVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSAC 632

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPV---SYIAILTACSHGGLVEKGKKYFDEMQADSV 290
            + G V+    L +   E  +  DP    SYI +    +  G+    KK  D M +  V
Sbjct: 633 RIAGNVE----LGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEV 687



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 128/248 (51%), Gaps = 8/248 (3%)

Query: 35  QNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF 94
           Q  L+   LQ+    P   EF N + L+      +R   +   K IH +II  GL  D F
Sbjct: 32  QFLLQNPCLQIPNLRPKRREFANLLQLS-----ISRNPIIHY-KIIHGQIIVSGLQSDTF 85

Query: 95  LTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
           L N L ++ +K   ++ A+ VF+ +  ++ ++++ ++  YSQ     E+L +F +++   
Sbjct: 86  LANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKS 145

Query: 154 MKH-DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
            +H +       I AC  L  +++G ++HG  +R      ++V  S++DFY+++G I+ A
Sbjct: 146 GEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEA 205

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
             +FD L  K + +W T+I GY   G    ++ LF  MRE  V  D     ++L+ACS  
Sbjct: 206 RLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSML 265

Query: 273 GLVEKGKK 280
             +E GK+
Sbjct: 266 EFLEGGKQ 273


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/415 (39%), Positives = 250/415 (60%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA     A A  +F    E  +V WNA+VA + +N   ++ +++ + M       + VT
Sbjct: 164 MYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVT 223

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+ AC R    + GK +   +  +GL  +  L  AL DMYAKCG +  A+ +F+ + 
Sbjct: 224 LVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQ 283

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V+++ +I GY+Q   C E+L LFSEM+L  ++ + V+ +  +SACA L A++ GK 
Sbjct: 284 SRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKW 343

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H    RK L     +  +++DFY + G ID A + F+ +PVK+S +W  LI G    G 
Sbjct: 344 VHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGR 403

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LF +MRE G+    V++I +L ACSH  LVE+G+++FD M  D  +KP   HY 
Sbjct: 404 GREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYG 463

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAGL+++A + I+ +P+EP+A IW ALL +C ++ NV +G  A + +  L P 
Sbjct: 464 CMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPS 523

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           H G Y+LLSN+YA AG+W +A+ VR+ MK R  +K PGCS ++    V +F   D
Sbjct: 524 HSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAED 578



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 143/275 (52%), Gaps = 2/275 (0%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           T    L +C+R   L  G+ + A  +++GL  D F+ ++L  MYA CG +  A+ VF+ +
Sbjct: 122 TAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAA 181

Query: 120 FRDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
               V  +N ++  Y +  D  E + +F  M  +G+  D V+ +  ++AC  +   K GK
Sbjct: 182 EESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGK 241

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            + G    + L  +  +  +++D Y + G I  A ++FD +  +D  +W+ +I GY    
Sbjct: 242 WVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQAD 301

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
           +   A+ LF  M+   V  + V+ +++L+AC+  G +E GK     ++   +  T +   
Sbjct: 302 QCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGT 361

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            +VD   + G ++DAV+  +++PV+ ++  W AL+
Sbjct: 362 ALVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALI 395



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 136/324 (41%), Gaps = 52/324 (16%)

Query: 109 LNLAQNVFNISFRDEVS---YNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFMG 163
           L  A ++F +  R  +S   YN+L+  +       ++L LF EM         D  +   
Sbjct: 66  LPYAVSLFRLGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAAC 125

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
           A+ +C+ + A+  G+ +    +++ L    FV +S++  Y   G +  A  +FD      
Sbjct: 126 ALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESG 185

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC-------------- 269
              WN ++  Y   G+    + +F+ M E GV +D V+ ++++TAC              
Sbjct: 186 VVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAG 245

Query: 270 ---------------------SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
                                +  G + K ++ FD MQ+  V    + ++ M+    +A 
Sbjct: 246 HVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDV----VAWSAMISGYTQAD 301

Query: 309 LMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365
              +A+ L   +    VEP+     ++L AC + G +E G W   H ++ + +     IL
Sbjct: 302 QCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWV--HSYVRRKRLSLTTIL 359

Query: 366 ---LSNMYAEAGKWDEASKVRELM 386
              L + YA+ G  D+A +  E M
Sbjct: 360 GTALVDFYAKCGCIDDAVEAFESM 383


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 154/418 (36%), Positives = 251/418 (60%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     +A  +   + E+N+VSW AM++ ++Q     +AL L  EM +    PN  T
Sbjct: 521 LYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFT 580

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL +C      + G++IH+ +I+      +F+ ++L DMYAK G +  A+ VF+ + 
Sbjct: 581 FATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 640

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS   +I GY+Q     E+L LF  ++  GM+ + V++   ++A + LAA+  G++
Sbjct: 641 ERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQ 700

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +R  L  ++ + NS++D Y++ G +  + +IFD +P +   SWN +++GY   G 
Sbjct: 701 VHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGL 760

Query: 240 VDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEM--QADSVKPTEMH 296
              A+ LF+ M+E+  V  D V+++A+L+ CSHGG+ ++G + F EM  Q D  +P   H
Sbjct: 761 GREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEH 820

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y C+VDL GRAG +E+A + IK +P EP A IWG+LLGACR++ NV +G + A  L  ++
Sbjct: 821 YGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIE 880

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            ++ G Y++LSN+YA AG+WD+   VRELMK +   K PG SW++    +  F  +DR
Sbjct: 881 SENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDR 938



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 172/339 (50%), Gaps = 12/339 (3%)

Query: 29  MVANFAQNRLELKAL-------QLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81
           +++ F  N  +LK L       + + EM I           +VL  C     +R G+ +H
Sbjct: 441 LLSTFPANSPDLKTLCSNRQLKEALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVH 500

Query: 82  ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCS 140
           A +I+      ++L   L  +Y KC CL  A+ V + +  R+ VS+  +I GYSQ    S
Sbjct: 501 AHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYAS 560

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
           E+L LF EM + G   +  +F   +++C + +  + G++IH + I+    +H+FV +S+L
Sbjct: 561 EALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLL 620

Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
           D Y ++G+I  A ++FD LP +D  S   +I GY  LG  + A++LF  ++ +G+  + V
Sbjct: 621 DMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYV 680

Query: 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           +Y ++LTA S    ++ G++    +    +    +    ++D+  + G +  + ++  ++
Sbjct: 681 TYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSM 740

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           P E     W A+L     +G   LG  A E   ++K ++
Sbjct: 741 P-ERTVISWNAMLVGYSKHG---LGREAVELFKLMKEEN 775


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 164/406 (40%), Positives = 244/406 (60%), Gaps = 4/406 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EA  +F  +  K++VSW AM++ + +N L  KA++    M      P+ +T+ +VL ACA
Sbjct: 349 EAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACA 408

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
               L  G  +H    R GL   + + N+L DMY+KC C++ A  VF+ I  ++ +S+  
Sbjct: 409 GLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTS 468

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +I+G        E+L  F +M +L +K + V+ +  +SACA + A+  GKEIH   +R  
Sbjct: 469 IILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTG 527

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L    F+ N++LD Y R GR++ A   F+    KD ASWN L+ GY   G+   A+ LF 
Sbjct: 528 LGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFH 586

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            M E  V  D +++ ++L ACS  G+V  G +YF+ M+    + P   HYA +VDLLGRA
Sbjct: 587 KMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRA 646

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           G +EDA + IK +P++PD  IWGALL ACRIY NVELG  AA+H+F +  +  GYYILL 
Sbjct: 647 GRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLC 706

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           N+YA++GKWDE ++VR++M+      +PGCSWV+   +V  F+  D
Sbjct: 707 NLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGD 752



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 180/369 (48%), Gaps = 3/369 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ +     EA Y+F  +AE+++ SWN +V  +A+     +AL L   M      P+  T
Sbjct: 138 MFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYT 197

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL  C     L  G+E+H  +IR G   D+ + NAL  MY KCG +  A+ VF+ + 
Sbjct: 198 FPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMP 257

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+N +I GY +   C E L LF  MR   +  D+++    ISAC  L   + G+E
Sbjct: 258 RRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGRE 317

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  I+      + V NS++  ++  G  D A  +F  +  KD  SW  +I GY   G 
Sbjct: 318 VHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGL 377

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+  +  M  +GV  D ++  ++L+AC+  GL++KG    +      +    +    
Sbjct: 378 PEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANS 437

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI-YGNVELGAWAAEHLFMLKPQ 358
           ++D+  +   ++ A+++   +P   +   W +++   R+ Y + E   +  + +  LKP 
Sbjct: 438 LIDMYSKCRCIDKALEVFHRIP-NKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPN 496

Query: 359 HCGYYILLS 367
                 +LS
Sbjct: 497 SVTLVSVLS 505



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 163/364 (44%), Gaps = 46/364 (12%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T   +L  C        G  +H+ + +      + L NAL  M+ + G L  A  VF  +
Sbjct: 96  TYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKM 155

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + RD  S+N+L+ GY++     E+L+L+  M  +G++ DV +F   +  C  L  + +G+
Sbjct: 156 AERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGR 215

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+H   IR    + + V N+++  Y + G I  A  +FD +P +D  SWN +I GY    
Sbjct: 216 EVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEND 275

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQA 287
                + LF  MRE  V  D ++  ++++AC            HG +++ G  +  E+  
Sbjct: 276 VCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTG--FVAEVSV 333

Query: 288 DSVKPTEMH-----------------------YACMVDLLGRAGLMEDAVK---LIKNLP 321
           ++    +MH                       +  M+    + GL E AV+   ++++  
Sbjct: 334 NN-SLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEG 392

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDE 378
           V PD     ++L AC   G ++ G     H F  +     Y I+   L +MY++    D+
Sbjct: 393 VVPDEITIASVLSACAGLGLLDKGIML--HEFADRTGLTSYVIVANSLIDMYSKCRCIDK 450

Query: 379 ASKV 382
           A +V
Sbjct: 451 ALEV 454



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 123/303 (40%), Gaps = 43/303 (14%)

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           N LI+      D  ++L     M+ L +  +  +++  +  C    A  +G  +H    +
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
                 + + N++L  + R G +  A  +F  +  +D  SWN L+ GY   G  D A+NL
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNL 182

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGL--VEKGK-------KYFDEMQADSVKP-TEMH 296
           +  M   G+  D  ++  +L  C  GGL  + +G+       +Y  E   D V     M+
Sbjct: 183 YHRMLWVGIRPDVYTFPCVLRTC--GGLPDLARGREVHLHVIRYGFESDVDVVNALITMY 240

Query: 297 YAC--------MVDLLGR----------AGLMEDAVKL--------IKNLPVEPDANIWG 330
             C        + D + R          +G  E+ V L        ++   V+PD     
Sbjct: 241 VKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMT 300

Query: 331 ALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDEASKVRELMK 387
           +++ AC   G+  LG     H +++K        +   L  M++  G WDEA  V   M+
Sbjct: 301 SVISACEALGDERLG--REVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKME 358

Query: 388 SRE 390
            ++
Sbjct: 359 FKD 361


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 154/414 (37%), Positives = 258/414 (62%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    ++A ++F  +  +++VSW  ++A +AQN +  +A+ L+ +M      PN  T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T++L A         G+++HA  ++   + D+++ +AL DMYA+C  +++A  VF+ + 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++EVS+N LI G+++ +D   +L  F+EM+  G      ++    SA A + A++QG+ 
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 180

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+       FV N++L  Y +SG +  A K+FD +  +D  +WNT++      G 
Sbjct: 181 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGL 240

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+  FE +R+ G+  + ++++++LTACSHGGLV++GK YFD M+  +V+P   HY  
Sbjct: 241 GKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVS 300

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
            VDLLGRAGL+++A+  +  +P+EP A +WGALLGACR++ N ++G +AA+H+F L P  
Sbjct: 301 FVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDD 360

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G  +LL N+YA  GKW++A++VR++MK+   KK P CSWVQ  + V  FV +D
Sbjct: 361 TGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADD 414


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 158/414 (38%), Positives = 253/414 (61%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  +  K++VSW +++A +AQN + ++A+ L+  M      PN  T
Sbjct: 95  MYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFT 154

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L A         G++IHA  ++ G + D+++ +AL DMYA+CG +++A  VF+ + 
Sbjct: 155 FASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLD 214

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N LI G+++  D   +L  F+EM   G +    ++    S+ A L A++QGK 
Sbjct: 215 SKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKW 274

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+       FV N++LD Y +SG +  A K+FD +  KD  +WN+++  +   G 
Sbjct: 275 VHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGL 334

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A++ FE MR+ GV  + ++++ ILTACSHGGLV++GK+YF+ M+   ++P   HY  
Sbjct: 335 GKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVT 394

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +V LLGRAGL+  A+  I  +P+EP A +WGALL ACR++ N ++G +AA+H+F L P  
Sbjct: 395 VVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDD 454

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G  +LL N+YA  G+WD A++VR +MK+   KK P CSWV+  + V  FV ND
Sbjct: 455 SGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVAND 508



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 144/298 (48%), Gaps = 5/298 (1%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P      + + ACA+   L   ++IHA +       D FL N+L  MY KC  +  A+NV
Sbjct: 49  PTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNV 108

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ +  +D VS+  LI GY+Q     E++ L   M     K +  +F   + A    A  
Sbjct: 109 FDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS 168

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G++IH + ++   H  ++V +++LD Y R G++D+A  +FD L  K+  SWN LI G+
Sbjct: 169 GTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G+ ++A+  F  M  +G      +Y ++ ++ +  G +E+GK     +     K T 
Sbjct: 229 ARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTA 288

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
                ++D+  ++G M DA K+   +    D   W ++L A   YG   LG  A  H 
Sbjct: 289 FVGNTLLDMYAKSGSMIDARKVFDRVD-NKDLVTWNSMLTAFAQYG---LGKEAVSHF 342



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 15/233 (6%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           I+ACA    ++  ++IH            F+ NS++  Y +   +  A  +FD +  KD 
Sbjct: 58  ITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDM 117

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            SW +LI GY        AI L   M +     +  ++ ++L A   G   + G     +
Sbjct: 118 VSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAA--GAYADSGTG--RQ 173

Query: 285 MQADSVKPT--EMHY--ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           + A +VK    E  Y  + ++D+  R G M+ A  +   L  +   + W AL+      G
Sbjct: 174 IHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVS-WNALISGFARKG 232

Query: 341 NVELGAWAAEHLFM--LKPQHCGYYILLSNMYA----EAGKWDEASKVRELMK 387
           + E        +     +  H  Y  + S++      E GKW  A  ++   K
Sbjct: 233 DGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQK 285


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 154/403 (38%), Positives = 252/403 (62%), Gaps = 2/403 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  +  K++VS+N ++A +AQ+ +   AL++VREM   +  P+S TL++VLP  +    
Sbjct: 198 VFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVD 257

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF-RDEVSYNILIVG 132
           +  GKEIH  +IRKG++ D+++ ++L DMYAK   +  ++ VF+  + RD +S+N L+ G
Sbjct: 258 VIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAG 317

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y Q    +E+L LF +M    +K   V+F   I ACA+LA +  GK++HG  +R    ++
Sbjct: 318 YVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSN 377

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +F+A++++D Y++ G I  A KIFD + V D  SW  +I+G+ + G    A++LFE M+ 
Sbjct: 378 IFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKR 437

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HYACMVDLLGRAGLME 311
            GV  + V+++A+LTACSH GLV++   YF+ M        E+ HYA + DLLGRAG +E
Sbjct: 438 QGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLE 497

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371
           +A   I  + VEP  ++W  LL +C ++ N+EL    AE +F +  ++ G Y+L+ NMYA
Sbjct: 498 EAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYA 557

Query: 372 EAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G+W E +K+R  M+ +  +K P CSW++ +++   FV  DR
Sbjct: 558 SNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDR 600



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 38/364 (10%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL 74
           F  +    +++W +++  F    L  KAL    EM      P+     +VL +C     L
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKC---GCLNLAQNVFN-------------- 117
           R G+ +H  I+R G++ DL+  NAL +MYAK    G      NVF+              
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181

Query: 118 --------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157
                               +  +D VSYN +I GY+Q+    ++L +  EM    +K D
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
             +    +   +    + +GKEIHG  IRK + + +++ +S++D Y +S RI+ + ++F 
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFS 301

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            L  +D  SWN+L+ GY   G  + A+ LF  M    V    V++ +++ AC+H   +  
Sbjct: 302 RLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHL 361

Query: 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
           GK+    +            + +VD+  + G ++ A K+   + V  + + W A++    
Sbjct: 362 GKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS-WTAIIMGHA 420

Query: 338 IYGN 341
           ++G+
Sbjct: 421 LHGH 424



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 139/234 (59%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS+R  ++  +F  +  ++ +SWN++VA + QN    +AL+L R+M      P +V 
Sbjct: 286 MYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVA 345

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++V+PACA    L  GK++H  ++R G   ++F+ +AL DMY+KCG +  A+ +F+ ++
Sbjct: 346 FSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMN 405

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
             DEVS+  +I+G++      E++SLF EM+  G+K + V+F+  ++AC+++  + +   
Sbjct: 406 VLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWG 465

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
             + +T    L+  L    ++ D   R+G+++ A      + V+ + S W+TL+
Sbjct: 466 YFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLL 519


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 155/415 (37%), Positives = 245/415 (59%), Gaps = 1/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  I+++N+V+WNAM+  + Q+     AL   + +      PNS T
Sbjct: 457 MYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSST 516

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T++L  C     L  GK +H  I++ GL  DL ++NAL  M+  CG L  A+N+FN + 
Sbjct: 517 FTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP 576

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N +I G+ Q      +   F  M+  G+K D ++F G ++ACA+  A+ +G+ 
Sbjct: 577 KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRR 636

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H +         + V   ++  YT+ G I+ A+++F  LP K+  SW ++I GY   G 
Sbjct: 637 LHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGR 696

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ LF  M+++GV  D ++++  L+AC+H GL+E+G  +F  M+  +++P   HY C
Sbjct: 697 GKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGC 756

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDL GRAGL+ +AV+ I  + VEPD+ +WGALLGAC+++ NVEL   AA+    L P  
Sbjct: 757 MVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPND 816

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            G +++LSN+YA AG W E +K+R++M  R   K PG SW++   +V  F  +D+
Sbjct: 817 NGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDK 871



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 195/391 (49%), Gaps = 37/391 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F ++ EK++ SWN ++  + Q+ L  +A +L  +M   +  P+  T
Sbjct: 154 MYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRT 213

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             ++L ACA    +  G+E++  I++ G + DLF+  AL +M+ KCG +  A  VF N+ 
Sbjct: 214 FVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLP 273

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++  +I G ++     ++ +LF  M   G++ D V+F+  + AC +  A++QGK+
Sbjct: 274 TRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKK 333

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H         T ++V  +IL  YT+ G ++ A ++FD +  ++  SW  +I G+   G 
Sbjct: 334 VHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGR 393

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +D A   F  M E G+  + V++++IL ACS    +++G++  D +        +     
Sbjct: 394 IDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTA 453

Query: 300 MVDLLGRAGLMEDAVKLIKNLP----------------------------------VEPD 325
           ++ +  + G ++DA ++ + +                                   ++P+
Sbjct: 454 LLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPN 513

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           ++ + ++L  C+   ++ELG W   H  ++K
Sbjct: 514 SSTFTSILNVCKSSDSLELGKWV--HFLIMK 542



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 170/321 (52%), Gaps = 11/321 (3%)

Query: 31  ANFAQNRLELKALQLVREMPIHNEFPNS------VTLTNVLPACARGHFLRPGKEIHARI 84
           AN   NRL  KA Q    M +     +S       T + +L  C +   L  G+ I+  I
Sbjct: 78  ANAVLNRLS-KAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHI 136

Query: 85  IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESL 143
            + G+  D+F+ N L +MYAKCG    A+ +F+ +  +D  S+N+L+ GY Q     E+ 
Sbjct: 137 KKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAF 196

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203
            L  +M    +K D  +F+  ++ACA+   + +G+E++ + ++    T LFV  ++++ +
Sbjct: 197 KLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMH 256

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
            + G I  A K+FD LP +D  +W ++I G    G    A NLF+ M E+GV  D V+++
Sbjct: 257 IKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFV 316

Query: 264 AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-CMVDLLGRAGLMEDAVKLIKNLPV 322
           ++L AC+H   +E+GKK    M+ +    TE++    ++ +  + G MEDA+++  +L  
Sbjct: 317 SLLRACNHPEALEQGKKVHARMK-EVGWDTEIYVGTAILSMYTKCGSMEDALEVF-DLVK 374

Query: 323 EPDANIWGALLGACRIYGNVE 343
             +   W A++     +G ++
Sbjct: 375 GRNVVSWTAMIAGFAQHGRID 395



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 177/343 (51%), Gaps = 6/343 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ K     +A+ +F N+  +++V+W +M+   A++    +A  L + M      P+ V 
Sbjct: 255 MHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVA 314

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L AC     L  GK++HAR+   G + ++++  A+  MY KCG +  A  VF+ + 
Sbjct: 315 FVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVK 374

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+  +I G++Q     E+   F++M   G++ + V+FM  + AC++ +A+K+G++
Sbjct: 375 GRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQ 434

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I    I     +   V  ++L  Y + G +  A+++F+ +  ++  +WN +I  Y    +
Sbjct: 435 IQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQ 494

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-KYFDEMQADSVKPTEMHYA 298
            D A+  F+A+ ++G+  +  ++ +IL  C     +E GK  +F  M+A     +++H +
Sbjct: 495 YDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGL--ESDLHVS 552

Query: 299 -CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
             +V +    G +  A  L  ++P + D   W  ++     +G
Sbjct: 553 NALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHG 594


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 164/406 (40%), Positives = 244/406 (60%), Gaps = 4/406 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EA  +F  +  K++VSW AM++ + +N L  KA++    M      P+ +T+ +VL ACA
Sbjct: 349 EAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACA 408

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
               L  G  +H    R GL   + + N+L DMY+KC C++ A  VF+ I  ++ +S+  
Sbjct: 409 GLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTS 468

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +I+G        E+L  F +M +L +K + V+ +  +SACA + A+  GKEIH   +R  
Sbjct: 469 IILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTG 527

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L    F+ N++LD Y R GR++ A   F+    KD ASWN L+ GY   G+   A+ LF 
Sbjct: 528 LGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFH 586

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            M E  V  D +++ ++L ACS  G+V  G +YF+ M+    + P   HYA +VDLLGRA
Sbjct: 587 KMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRA 646

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           G +EDA + IK +P++PD  IWGALL ACRIY NVELG  AA+H+F +  +  GYYILL 
Sbjct: 647 GRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLC 706

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           N+YA++GKWDE ++VR++M+      +PGCSWV+   +V  F+  D
Sbjct: 707 NLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGD 752



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 180/369 (48%), Gaps = 3/369 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ +     EA Y+F  +AE+++ SWN +V  +A+     +AL L   M      P+  T
Sbjct: 138 MFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYT 197

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL  C     L  G+E+H  +IR G   D+ + NAL  MY KCG +  A+ VF+ + 
Sbjct: 198 FPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMP 257

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+N +I GY +   C E L LF  MR   +  D+++    ISAC  L   + G+E
Sbjct: 258 RRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGRE 317

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  I+      + V NS++  ++  G  D A  +F  +  KD  SW  +I GY   G 
Sbjct: 318 VHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGL 377

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+  +  M  +GV  D ++  ++L+AC+  GL++KG    +      +    +    
Sbjct: 378 PEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANS 437

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI-YGNVELGAWAAEHLFMLKPQ 358
           ++D+  +   ++ A+++   +P   +   W +++   R+ Y + E   +  + +  LKP 
Sbjct: 438 LIDMYSKCRCIDKALEVFHRIP-NKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPN 496

Query: 359 HCGYYILLS 367
                 +LS
Sbjct: 497 SVTLVSVLS 505



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 163/364 (44%), Gaps = 46/364 (12%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T   +L  C        G  +H+ + +      + L NAL  M+ + G L  A  VF  +
Sbjct: 96  TYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKM 155

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + RD  S+N+L+ GY++     E+L+L+  M  +G++ DV +F   +  C  L  + +G+
Sbjct: 156 AERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGR 215

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+H   IR    + + V N+++  Y + G I  A  +FD +P +D  SWN +I GY    
Sbjct: 216 EVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEND 275

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQA 287
                + LF  MRE  V  D ++  ++++AC            HG +++ G  +  E+  
Sbjct: 276 VCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTG--FVAEVSV 333

Query: 288 DSVKPTEMH-----------------------YACMVDLLGRAGLMEDAVK---LIKNLP 321
           ++    +MH                       +  M+    + GL E AV+   ++++  
Sbjct: 334 NN-SLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEG 392

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDE 378
           V PD     ++L AC   G ++ G     H F  +     Y I+   L +MY++    D+
Sbjct: 393 VVPDEITIASVLSACAGLGLLDKGIML--HEFADRTGLTSYVIVANSLIDMYSKCRCIDK 450

Query: 379 ASKV 382
           A +V
Sbjct: 451 ALEV 454



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 123/303 (40%), Gaps = 43/303 (14%)

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           N LI+      D  ++L     M+ L +  +  +++  +  C    A  +G  +H    +
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
                 + + N++L  + R G +  A  +F  +  +D  SWN L+ GY   G  D A+NL
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNL 182

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGL--VEKGK-------KYFDEMQADSVKP-TEMH 296
           +  M   G+  D  ++  +L  C  GGL  + +G+       +Y  E   D V     M+
Sbjct: 183 YHRMLWVGIRPDVYTFPCVLRTC--GGLPDLARGREVHLHVIRYGFESDVDVVNALITMY 240

Query: 297 YAC--------MVDLLGR----------AGLMEDAVKL--------IKNLPVEPDANIWG 330
             C        + D + R          +G  E+ V L        ++   V+PD     
Sbjct: 241 VKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMT 300

Query: 331 ALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDEASKVRELMK 387
           +++ AC   G+  LG     H +++K        +   L  M++  G WDEA  V   M+
Sbjct: 301 SVISACEALGDERLG--REVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKME 358

Query: 388 SRE 390
            ++
Sbjct: 359 FKD 361


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 154/414 (37%), Positives = 258/414 (62%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    ++A ++F  +  +++VSW  ++A +AQN +  +A+ L+ +M      PN  T
Sbjct: 104 MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 163

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T++L A         G+++HA  ++   + D+++ +AL DMYA+C  +++A  VF+ + 
Sbjct: 164 FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 223

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++EVS+N LI G+++ +D   +L  F+EM+  G      ++    SA A + A++QG+ 
Sbjct: 224 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 283

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+       FV N++L  Y +SG +  A K+FD +  +D  +WNT++      G 
Sbjct: 284 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGL 343

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+  FE +R+ G+  + ++++++LTACSHGGLV++GK YFD M+  +V+P   HY  
Sbjct: 344 GKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVS 403

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
            VDLLGRAGL+++A+  +  +P+EP A +WGALLGACR++ N ++G +AA+H+F L P  
Sbjct: 404 FVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDD 463

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G  +LL N+YA  GKW++A++VR++MK+   KK P CSWVQ  + V  FV +D
Sbjct: 464 TGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADD 517



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 147/298 (49%), Gaps = 5/298 (1%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P      +++ ACA+   L   + IHA + R  L  D FL N+L  MY KCG ++ A++V
Sbjct: 58  PTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHV 117

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ +  RD VS+  LI GY+Q    +E++ L  +M     + +  +F   + A       
Sbjct: 118 FDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGC 177

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G+++H + ++ +    ++V +++LD Y R  ++D+A  +FD L  K+  SWN LI G+
Sbjct: 178 SIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGF 237

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
               + +T +  F  M+ +G G    +Y ++ +A +  G +E+G+     +     K T 
Sbjct: 238 ARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTA 297

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
                M+ +  ++G M DA K+   +  + D   W  +L A   YG   LG  A  H 
Sbjct: 298 FVGNTMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTALAQYG---LGKEAVAHF 351



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 93/233 (39%), Gaps = 15/233 (6%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           I+ACA    +   + IH    R  L    F+ NS++  Y + G +  A  +FD +P +D 
Sbjct: 67  IAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDV 126

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            SW  LI GY        AI L   M       +  ++ ++L A    G    G    ++
Sbjct: 127 VSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIG----EQ 182

Query: 285 MQADSVKPT--EMHY--ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG--ACRI 338
           M A +VK    E  Y  + ++D+  R   M+ A+ +   L V  +   W AL+   A + 
Sbjct: 183 MHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL-VSKNEVSWNALIAGFARKA 241

Query: 339 YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA----EAGKWDEASKVRELMK 387
            G   L  +A          H  Y  + S        E G+W  A  ++   K
Sbjct: 242 DGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQK 294


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 159/416 (38%), Positives = 251/416 (60%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++     +A  +F  +  K+++SW AM+   A++    +AL + +EM      PN VT
Sbjct: 372 MYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVT 431

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T++L AC+    L  G+ IH +++  GL  D  + N L +MY+ CG +  A+ VF+ + 
Sbjct: 432 YTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMI 491

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V+YN +I GY+  +   E+L LF  ++  G+K D V+++  ++ACAN  +++  +E
Sbjct: 492 QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWARE 551

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH +  +    +   V N+++  Y + G    A+ +F+ +  ++  SWN +I G    G 
Sbjct: 552 IHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGR 611

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LFE M+ +GV  D V+++++L+ACSH GL+E+G++YF  M  D ++ PT  HY 
Sbjct: 612 GQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYG 671

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAG +++A  LIK +P + +  IWGALLGACRI+GNV +   AAE    L   
Sbjct: 672 CMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLD 731

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +   Y+ LS+MYA AG WD A+K+R+LM+ R   K PG SW+Q  D++  FV  DR
Sbjct: 732 NAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDR 787



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/436 (28%), Positives = 203/436 (46%), Gaps = 58/436 (13%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     EA  +F  + +K++VSW   +  +A       A ++ ++M      PN +T
Sbjct: 170 MYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRIT 229

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +VL A +    L+ GK +H+RI+  G   D  +  AL  MYAKCG     + VF  + 
Sbjct: 230 YISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLV 289

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +++N +I G ++     E+  ++++M+  G+  + ++++  ++AC N AA+  GKE
Sbjct: 290 NRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKE 349

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH    +    + + V N+++  Y+R G I  A  +FD +  KD  SW  +I G    G 
Sbjct: 350 IHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGF 409

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG---------- 278
              A+ +++ M++ GV  + V+Y +IL ACS           H  +VE G          
Sbjct: 410 GAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNT 469

Query: 279 --------------KKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
                         ++ FD M Q D V      Y  M+       L ++A+KL   L  E
Sbjct: 470 LVNMYSMCGSVKDARQVFDRMIQRDIVA-----YNAMIGGYAAHNLGKEALKLFDRLQEE 524

Query: 324 ---PDANIWGALLGACRIYGNVELGAWAAE-HLFMLKPQHCGYYI------LLSNMYAEA 373
              PD   +  +L AC   G++E   WA E H  + K    G++        L + YA+ 
Sbjct: 525 GLKPDKVTYINMLNACANSGSLE---WAREIHTLVRKG---GFFSDTSVGNALVSTYAKC 578

Query: 374 GKWDEASKVRELMKSR 389
           G + +AS V E M  R
Sbjct: 579 GSFSDASIVFEKMTKR 594



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 171/338 (50%), Gaps = 4/338 (1%)

Query: 1   MYAKSSRPAEASYLFHNIA--EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY +     EA  ++  ++  E+ + SWNAMV  + Q     KAL+L+R+M  H   P+ 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T+ + L +C     L  G+EIH + ++ GL FD+ + N + +MYAKCG +  A+ VF+ 
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  +  VS+ I I GY+       +  +F +M   G+  + ++++  ++A ++ AA+K G
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K +H   +     +   V  +++  Y + G      ++F+ L  +D  +WNT+I G    
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 306

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G  + A  ++  M+ +GV  + ++Y+ +L AC +   +  GK+    +            
Sbjct: 307 GYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQ 366

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
             ++ +  R G ++DA +L+ +  V  D   W A++G 
Sbjct: 367 NALISMYSRCGSIKDA-RLVFDKMVRKDVISWTAMIGG 403



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 161/336 (47%), Gaps = 16/336 (4%)

Query: 42  ALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101
           A+ +V+ +       NS     +L  C     L  G+++H  II+     D +  NAL +
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 102 MYAKCGCLNLAQNVFN-ISFRDEV--SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
           MY +CG +  A+ V+  +S+ +    S+N ++VGY Q     ++L L  +M+  G+  D 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
            + M  +S+C +  A++ G+EIH   ++  L   + VAN IL+ Y + G I+ A ++FD 
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +  K   SW   I GY   G  +TA  +F+ M ++GV  + ++YI++L A S    ++ G
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
           K     +     +        +V +  + G  +D  ++ + L V  D   W  ++G    
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIG---- 301

Query: 339 YGNVELGAW--AAEHLFMLK-----PQHCGYYILLS 367
            G  E G W  A+E    ++     P    Y ILL+
Sbjct: 302 -GLAEGGYWEEASEVYNQMQREGVMPNKITYVILLN 336


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 155/415 (37%), Positives = 245/415 (59%), Gaps = 1/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  I+++N+V+WNAM+  + Q+     AL   + +      PNS T
Sbjct: 457 MYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSST 516

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T++L  C     L  GK +H  I++ GL  DL ++NAL  M+  CG L  A+N+FN + 
Sbjct: 517 FTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP 576

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N +I G+ Q      +   F  M+  G+K D ++F G ++ACA+  A+ +G+ 
Sbjct: 577 KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRR 636

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H +         + V   ++  YT+ G I+ A+++F  LP K+  SW ++I GY   G 
Sbjct: 637 LHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGR 696

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ LF  M+++GV  D ++++  L+AC+H GL+E+G  +F  M+  +++P   HY C
Sbjct: 697 GKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGC 756

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDL GRAGL+ +AV+ I  + VEPD+ +WGALLGAC+++ NVEL   AA+    L P  
Sbjct: 757 MVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPND 816

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            G +++LSN+YA AG W E +K+R++M  R   K PG SW++   +V  F  +D+
Sbjct: 817 NGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDK 871



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 195/391 (49%), Gaps = 37/391 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F ++ EK++ SWN ++  + Q+ L  +A +L  +M   +  P+  T
Sbjct: 154 MYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRT 213

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             ++L ACA    +  G+E++  I++ G + DLF+  AL +M+ KCG +  A  VF N+ 
Sbjct: 214 FVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLP 273

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++  +I G ++     ++ +LF  M   G++ D V+F+  + AC +  A++QGK+
Sbjct: 274 TRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKK 333

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H         T ++V  +IL  YT+ G ++ A ++FD +  ++  SW  +I G+   G 
Sbjct: 334 VHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGR 393

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +D A   F  M E G+  + V++++IL ACS    +++G++  D +        +     
Sbjct: 394 IDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTA 453

Query: 300 MVDLLGRAGLMEDAVKLIKNLP----------------------------------VEPD 325
           ++ +  + G ++DA ++ + +                                   ++P+
Sbjct: 454 LLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPN 513

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           ++ + ++L  C+   ++ELG W   H  ++K
Sbjct: 514 SSTFTSILNVCKSSDSLELGKWV--HFLIMK 542



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 170/321 (52%), Gaps = 11/321 (3%)

Query: 31  ANFAQNRLELKALQLVREMPIHNEFPNS------VTLTNVLPACARGHFLRPGKEIHARI 84
           AN   NRL  KA Q    M +     +S       T + +L  C +   L  G+ I+  I
Sbjct: 78  ANAVLNRLS-KAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHI 136

Query: 85  IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESL 143
            + G+  D+F+ N L +MYAKCG    A+ +F+ +  +D  S+N+L+ GY Q     E+ 
Sbjct: 137 KKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAF 196

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203
            L  +M    +K D  +F+  ++ACA+   + +G+E++ + ++    T LFV  ++++ +
Sbjct: 197 KLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMH 256

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
            + G I  A K+FD LP +D  +W ++I G    G    A NLF+ M E+GV  D V+++
Sbjct: 257 IKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFV 316

Query: 264 AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-CMVDLLGRAGLMEDAVKLIKNLPV 322
           ++L AC+H   +E+GKK    M+ +    TE++    ++ +  + G MEDA+++  +L  
Sbjct: 317 SLLRACNHPEALEQGKKVHARMK-EVGWDTEIYVGTAILSMYTKCGSMEDALEVF-DLVK 374

Query: 323 EPDANIWGALLGACRIYGNVE 343
             +   W A++     +G ++
Sbjct: 375 GRNVVSWTAMIAGFAQHGRID 395



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 177/343 (51%), Gaps = 6/343 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ K     +A+ +F N+  +++V+W +M+   A++    +A  L + M      P+ V 
Sbjct: 255 MHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVA 314

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L AC     L  GK++HAR+   G + ++++  A+  MY KCG +  A  VF+ + 
Sbjct: 315 FVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVK 374

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+  +I G++Q     E+   F++M   G++ + V+FM  + AC++ +A+K+G++
Sbjct: 375 GRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQ 434

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I    I     +   V  ++L  Y + G +  A+++F+ +  ++  +WN +I  Y    +
Sbjct: 435 IQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQ 494

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-KYFDEMQADSVKPTEMHYA 298
            D A+  F+A+ ++G+  +  ++ +IL  C     +E GK  +F  M+A     +++H +
Sbjct: 495 YDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGL--ESDLHVS 552

Query: 299 -CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
             +V +    G +  A  L  ++P + D   W  ++     +G
Sbjct: 553 NALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHG 594


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 167/443 (37%), Positives = 262/443 (59%), Gaps = 24/443 (5%)

Query: 2   YAKSSRPAEASYLFHNIAEKNI----VSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           Y +S     A  LF N+ ++NI    ++W+A++A +AQ     +AL   ++M +    PN
Sbjct: 335 YTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPN 394

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGL------------NFDLFLTNALTDMYAK 105
           SVT+ ++L ACA    L  G EIHA  ++K L              DL + NAL DMY+K
Sbjct: 395 SVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSK 454

Query: 106 CGCLNLAQNVFNISFRDE---VSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVS 160
           C     A+++F+   R E   V++ ++I GY+Q  D +++L +FSEM  +   +  +  +
Sbjct: 455 CRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYT 514

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLH--THLFVANSILDFYTRSGRIDLANKIFDC 218
               + ACA+LAA++ GK+IH    R H +  +  FVAN ++D Y++ G +D A  +FD 
Sbjct: 515 ISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDS 574

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P ++  SW +++ GYGM G    A+++F+ M++ G   D +S++ +L ACSH G+V++G
Sbjct: 575 MPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQG 634

Query: 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
             YFD M+ D  V  +  HYAC++DLL R G ++ A K I+ +P+EP A IW ALL ACR
Sbjct: 635 LNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACR 694

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           ++ NVEL  +A   L  +K ++ G Y L+SN+YA A +W + +++R+LMK    KK PGC
Sbjct: 695 VHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGC 754

Query: 398 SWVQTRDEVQDFVVNDRMKTFTP 420
           SWVQ +     F V DR    +P
Sbjct: 755 SWVQGKKGTASFFVGDRSHPLSP 777



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 150/317 (47%), Gaps = 10/317 (3%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +A  +   +     V WN +V    +     +A+ +   M      P+  TL   L AC 
Sbjct: 101 DALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACG 160

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR----DEVS 125
                  G+ +H  I   G   ++F+ NAL  MY++CG L  A  VF+   R    D +S
Sbjct: 161 ELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVIS 220

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLL------GMKHDVVSFMGAISACANLAAIKQGKE 179
           +N ++  + + S+   +L LFSEM ++        + D++S +  + ACA+L A+ Q KE
Sbjct: 221 WNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKE 280

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   IR       FV N+++D Y + G ++ A K+F+ +  KD  SWN ++ GY   G 
Sbjct: 281 IHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGN 340

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A  LFE MR++ +  D +++ A++   +  G  ++    F +M  D  +P  +    
Sbjct: 341 FGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIIS 400

Query: 300 MVDLLGRAGLMEDAVKL 316
           ++      G +   +++
Sbjct: 401 LLSACASLGALSQGMEI 417



 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 23/124 (18%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F ++ ++N VSW +M++ +  +    +AL +  +M      P+ ++
Sbjct: 558 MYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDIS 617

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLN-FDLFLTN-----------ALTDMYAKCGC 108
              +L AC+           H+ ++ +GLN FD+   +            + D+ A+CG 
Sbjct: 618 FLVLLYACS-----------HSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGR 666

Query: 109 LNLA 112
           L+ A
Sbjct: 667 LDKA 670


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 159/417 (38%), Positives = 249/417 (59%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MY K    AEAS LF  +  ++ VSWNA++A   QN  E + L     M IH+   P+  
Sbjct: 427 MYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASM-IHSRMEPDDF 485

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T  +VL ACA    L  G EIH RII+ G+ FD F+  AL DMY KCG +  A  + +  
Sbjct: 486 TYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRT 545

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +  VS+N +I G+S      ++   FS M  +G+  D  ++   +  CANLA +  GK
Sbjct: 546 EQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGK 605

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH   I++ L + +++ ++++D Y++ G +  +  +F+  P +D  +WN ++ GY   G
Sbjct: 606 QIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHG 665

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
             + A+ LFE+M+   V  +  +++++L AC+H GLV+KG  YFD M ++  + P   HY
Sbjct: 666 LGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHY 725

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +CMVD+LGR+G +++A+ L++ +P E DA IW  LL  C+I+GNVE+   A   L  L P
Sbjct: 726 SCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRALLQLDP 785

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           Q     +LLSN+YA+AG W   S++R++M+  + KK PGCSW++ +DEV  F+V D+
Sbjct: 786 QDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIELKDEVHAFLVGDK 842



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 166/317 (52%), Gaps = 1/317 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R  ++  +F  + EKN VSW+AM+A   QN   ++ L+L +EM       +   
Sbjct: 225 MYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSI 284

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             ++  +CA    LR GKE+H+  ++     D+ +  A  DMYAKCG +  AQ V +   
Sbjct: 285 YASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMP 344

Query: 121 RDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           +  + SYN +IVGY+++    ++L  F  +   G+  D ++  GA++ACA++    +G++
Sbjct: 345 KCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQ 404

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+ ++    +++ VAN+ILD Y +   +  A+ +FD +  +D+ SWN +I      G 
Sbjct: 405 VHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGN 464

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            +  +  F +M    +  D  +Y ++L AC+    +  G +    +    +       A 
Sbjct: 465 EEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAA 524

Query: 300 MVDLLGRAGLMEDAVKL 316
           +VD+  + G++E A K+
Sbjct: 525 LVDMYCKCGMIEKADKI 541



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 170/347 (48%), Gaps = 10/347 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A   F+ + E+++VSWN++++ F QN    K++ +  EM       +  +L
Sbjct: 125 YASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASL 184

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL AC        G ++H  +++ G + D+   +AL  MYAKC  L+ + +VF+ +  
Sbjct: 185 AVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPE 244

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ VS++ +I G  Q     E L LF EM+ +G+      +     +CA L+A++ GKE+
Sbjct: 245 KNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKEL 304

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++    + + V  + LD Y + GR+  A K+   +P     S+N +I+GY      
Sbjct: 305 HSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRG 364

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC- 299
             A+  F+ + + G+G+D ++    L AC+      +G     ++   +VK   M   C 
Sbjct: 365 FQALKSFQLLLKTGLGFDEITLSGALNACAS----IRGDLEGRQVHGLAVKSISMSNICV 420

Query: 300 ---MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
              ++D+ G+   + +A  L  ++    DA  W A++ AC   GN E
Sbjct: 421 ANAILDMYGKCKALAEASDLF-DMMERRDAVSWNAIIAACEQNGNEE 466



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 130/294 (44%), Gaps = 32/294 (10%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T +++   C++ + L PGK+ HAR+I  G     F++N L  MY KC  L+ A  VF+ +
Sbjct: 51  TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKM 110

Query: 119 SFRDEVSYNILIVGYS-------------------------------QTSDCSESLSLFS 147
             RD VSYN +I GY+                               Q  +C +S+ +F 
Sbjct: 111 YLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFL 170

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           EM   G+  D  S    + AC  L     G ++HG+ ++      +   +++L  Y +  
Sbjct: 171 EMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCK 230

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
           R+D +  +F  LP K+  SW+ +I G          + LF+ M+  GVG     Y ++  
Sbjct: 231 RLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFR 290

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
           +C+    +  GK+        +     +     +D+  + G M DA K++ ++P
Sbjct: 291 SCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMP 344


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 152/419 (36%), Positives = 262/419 (62%), Gaps = 4/419 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     E   +F  ++ +++V+WN++++   Q      A+++   M      P+ +T
Sbjct: 214 VYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLT 273

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           L ++  A A+   +  G+ +H  ++R+G +  D+   NA+ DMYAK   +  AQ +F+ +
Sbjct: 274 LLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSM 333

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQG 177
             RD VS+N LI GY Q    SE++ ++  M +  G+K    +F+  + A ++L A++QG
Sbjct: 334 PVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQG 393

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
             +H ++I+  L+  ++V   ++D Y + G++D A  +F+  P + +  WN +I G G+ 
Sbjct: 394 TRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVH 453

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPTEMH 296
           G    A++LF  M+++G+  D V+++++L ACSH GLV++G+ +F+ MQ A  +KP   H
Sbjct: 454 GHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKH 513

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YACMVD+ GRAG ++DA   I+N+P++PD+ IWGALLGACRI+GNVE+G  A+++LF L 
Sbjct: 514 YACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELD 573

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           P++ GYY+L+SNMYA+ GKWD   +VR L++ +  +K PG S ++ +  V  F   ++M
Sbjct: 574 PKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQM 632



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 207/398 (52%), Gaps = 19/398 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +  R  +A   F  +  +++ +WNAM++   +N    +A+ L   M +     ++VT+
Sbjct: 114 YLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTV 173

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           ++VLP C           +H   ++ GL+ +LF+ NA+ D+Y K G L   + VF+ +S 
Sbjct: 174 SSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSS 233

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD V++N +I G+ Q    + ++ +F  MR  G+  DV++ +   SA A    I  G+ +
Sbjct: 234 RDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSV 293

Query: 181 HGVTIRKHLHTHLFVA-NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           H   +R+       +A N+I+D Y +  +I+ A ++FD +PV+D+ SWNTLI GY   G 
Sbjct: 294 HCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGL 353

Query: 240 VDTAINLFEAMREDGVGYDPV--SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
              AI++++ M++   G  P+  +++++L A SH G +++G +    M A S+K T ++ 
Sbjct: 354 ASEAIHVYDHMQKHE-GLKPIQGTFVSVLPAYSHLGALQQGTR----MHALSIK-TGLNL 407

Query: 298 -----ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN--VELGAWAAE 350
                 C++DL  + G +++A+ L +  P       W A++    ++G+    L  ++  
Sbjct: 408 DVYVGTCVIDLYAKCGKLDEAMLLFEQTP-RRSTGPWNAVISGVGVHGHGAKALSLFSQM 466

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
               + P H  +  LL+   + AG  D+      +M++
Sbjct: 467 QQEGISPDHVTFVSLLAAC-SHAGLVDQGRNFFNMMQT 503



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 149/318 (46%), Gaps = 10/318 (3%)

Query: 76  PGK--EIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
           PG   ++HA  +R GL   D F + AL   Y + G +  A   F+ +  RD  ++N ++ 
Sbjct: 84  PGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLS 143

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           G  + +  +E++ LF  M + G+  D V+    +  C  L        +H   ++  L  
Sbjct: 144 GLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDD 203

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            LFV N+++D Y + G ++   K+FD +  +D  +WN++I G+   G+V +A+ +F  MR
Sbjct: 204 ELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMR 263

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-CMVDLLGRAGLM 310
           + GV  D ++ +++ +A +  G +  G+     M        ++     +VD+  +   +
Sbjct: 264 DSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKI 323

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM---LKPQHCGYYILLS 367
           E A ++  ++PV  DA  W  L+      G         +H+     LKP   G ++ + 
Sbjct: 324 EAAQRMFDSMPVR-DAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQ-GTFVSVL 381

Query: 368 NMYAEAGKWDEASKVREL 385
             Y+  G   + +++  L
Sbjct: 382 PAYSHLGALQQGTRMHAL 399


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 155/451 (34%), Positives = 262/451 (58%), Gaps = 38/451 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELK-----ALQLVREMPIHNEF 55
           MY K +   +A   F  +++++++SW+AM+A +AQ+  + K       QL+  M     F
Sbjct: 324 MYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVF 383

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           PN VT  ++L AC+    L  G++IHA I + G   D  L  A+ +MYAKCG +  A+ V
Sbjct: 384 PNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQV 443

Query: 116 FN--------------------------------ISFRDEVSYNILIVGYSQTSDCSESL 143
           F+                                +S R+ VS+N++I GY+Q+ D ++  
Sbjct: 444 FSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVF 503

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203
            L S M++ G + D V+ +  + AC  L+A+++GK +H   ++  L +   VA S++  Y
Sbjct: 504 ELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMY 563

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
           ++ G +  A  +FD +  +D+ +WN ++ GYG  G    A++LF+ M ++ V  + +++ 
Sbjct: 564 SKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFT 623

Query: 264 AILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
           A+++AC   GLV++G++ F  MQ D  +KP + HY CMVDLLGRAG +++A + I+ +P 
Sbjct: 624 AVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPC 683

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382
           EPD ++W ALLGAC+ + NV+L  WAA H+  L+P +   Y+ LSN+YA+AG+WD+++KV
Sbjct: 684 EPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKV 743

Query: 383 RELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           R++M  +  KK+ G S ++    +  FV  D
Sbjct: 744 RKVMDDKGLKKDRGESSIEIDGRIHTFVAED 774



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 211/462 (45%), Gaps = 79/462 (17%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K    + A  +F  + E+N+VSW A++   AQ+R   +A +L  +M      PN+VT
Sbjct: 223 MYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVT 282

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L +C     L  G+ IH+ I  +GL  D+ + NAL  MY KC C+  A+  F+ +S
Sbjct: 283 FVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMS 342

Query: 120 FRDEVSYNILIVGYSQT-----SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
            RD +S++ +I GY+Q+         E   L   MR  G+  + V+FM  + AC+   A+
Sbjct: 343 KRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGAL 402

Query: 175 KQGKEIH------GVTIRKHLHTHLF------------------------VA-NSILDFY 203
           +QG++IH      G    + L T +F                        VA  S+L  Y
Sbjct: 403 EQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMY 462

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
            + G +  A K+F  +  ++  SWN +I GY   G++     L  +M+ +G   D V+ I
Sbjct: 463 IKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTII 522

Query: 264 AILTACSHGGLVEKGKKYFDE-----MQADSVKPTE---MHYAC---------------- 299
           +IL AC     +E+GK    E     +++D+V  T    M+  C                
Sbjct: 523 SILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNR 582

Query: 300 -------MVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGA--- 346
                  M+   G+ G+  +AV L K +    V P+   + A++ AC   G V+ G    
Sbjct: 583 DTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIF 642

Query: 347 WAAEHLFMLKP--QHCGYYILLSNMYAEAGKWDEASKVRELM 386
              +  F +KP  QH G  +   ++   AG+  EA +  + M
Sbjct: 643 RIMQEDFRMKPGKQHYGCMV---DLLGRAGRLQEAEEFIQRM 681



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 195/394 (49%), Gaps = 15/394 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K    A    +F  +  +++V+W++M+A +A N    KA      M   N  PN +T 
Sbjct: 123 YSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITF 182

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++L AC     L   +EIH  +   G+  D+ +  AL  MY+KCG ++LA  +F  +  
Sbjct: 183 LSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKE 242

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+  +I   +Q    +E+  L+ +M   G+  + V+F+  +++C    A+ +G+ I
Sbjct: 243 RNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRI 302

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG-- 238
           H     + L T + VAN+++  Y +   I  A + FD +  +D  SW+ +I GY   G  
Sbjct: 303 HSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQ 362

Query: 239 ---EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
               +D    L E MR +GV  + V++++IL ACS  G +E+G++   E+     +    
Sbjct: 363 DKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRS 422

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM- 354
               + ++  + G + +A ++   +    +   W +LL      G++     +AE +F  
Sbjct: 423 LQTAIFNMYAKCGSIYEAEQVFSKME-NKNVVAWASLLTMYIKCGDLT----SAEKVFSE 477

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
           +  ++   + L+   YA++G   + +KV EL+ S
Sbjct: 478 MSTRNVVSWNLMIAGYAQSG---DIAKVFELLSS 508



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/394 (21%), Positives = 184/394 (46%), Gaps = 49/394 (12%)

Query: 41  KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100
           +A+QL+  +       NS T   ++  CA+      GK +H ++   GL  D++L N+L 
Sbjct: 61  EAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLI 120

Query: 101 DMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
           + Y+K G +   + VF  ++ RD V+++ +I  Y+  +  +++   F  M+   ++ + +
Sbjct: 121 NFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRI 180

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           +F+  + AC N + +++ +EIH V     + T + VA +++  Y++ G I LA +IF  +
Sbjct: 181 TFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKM 240

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS--------- 270
             ++  SW  +I       +++ A  L+E M + G+  + V+++++L +C+         
Sbjct: 241 KERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGR 300

Query: 271 --HGGLVEKG------------------------KKYFDEMQADSVKPTEMHYACMVDLL 304
             H  + E+G                        ++ FD M    V    + ++ M+   
Sbjct: 301 RIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDV----ISWSAMIAGY 356

Query: 305 GRAGL-----MEDAVKLIKNLPVE---PDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
            ++G      +++  +L++ +  E   P+   + ++L AC ++G +E G      +  + 
Sbjct: 357 AQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVG 416

Query: 357 -PQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
                     + NMYA+ G   EA +V   M+++
Sbjct: 417 FESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENK 450


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 156/412 (37%), Positives = 248/412 (60%), Gaps = 3/412 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +A  LF  + EK+ VSW+AM+   AQN +E +A++  REM I     +     +VLPAC 
Sbjct: 220 DALQLFRGM-EKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACG 278

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
               +  G++IHA IIR  L   +++ +AL DMY KC CL+ A+ VF+ +  ++ VS+  
Sbjct: 279 GLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTA 338

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           ++VGY QT    E++ +F +M+  G+  D  +   AISACAN++++++G + HG  I   
Sbjct: 339 MVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAG 398

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L  ++ V+NS++  Y + G ID + ++F+ + V+D  SW  ++  Y   G    AI LF+
Sbjct: 399 LIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFD 458

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            M + G+  D V+   +++ACS  GLVEKG++YF+ M  +  + P+  HY+CM+DL  R+
Sbjct: 459 KMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRS 518

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           G +E+A+  I  +P  PDA  W  LL ACR  GN+E+G WAAE L  L P H   Y LLS
Sbjct: 519 GRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLS 578

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
           ++YA  GKWD  +++R  MK +  +K PG SW++ + ++  F  +D    ++
Sbjct: 579 SIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYS 630



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 182/377 (48%), Gaps = 45/377 (11%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS--- 58
           Y+KS   +E    F  + +++ V+WN ++  ++ + L   A++    M    +F ++   
Sbjct: 79  YSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM--MKDFSSNLTR 136

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-- 116
           VTL  +L   +    +  GK+IH ++I+ G    L + + L DMY+K GC++ A+ VF  
Sbjct: 137 VTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYG 196

Query: 117 -----NISF------------------------RDEVSYNILIVGYSQTSDCSESLSLFS 147
                 + +                        +D VS++ +I G +Q     E++  F 
Sbjct: 197 LDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFR 256

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           EM++ G+K D   F   + AC  L AI  G++IH   IR +L  H++V ++++D Y +  
Sbjct: 257 EMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCK 316

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
            +  A  +FD +  K+  SW  +++GYG  G    A+ +F  M+  G+  D  +    ++
Sbjct: 317 CLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAIS 376

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC----MVDLLGRAGLMEDAVKLIKNLPVE 323
           AC++   +E+G ++       ++    +HY      +V L G+ G ++D+ +L   + V 
Sbjct: 377 ACANISSLEEGSQF----HGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVR 432

Query: 324 PDANIWGALLGACRIYG 340
            + + W A++ A   +G
Sbjct: 433 DEVS-WTAMVSAYAQFG 448



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 126/237 (53%), Gaps = 9/237 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  + +KN+VSW AMV  + Q     +A+++  +M      P+  T
Sbjct: 311 MYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYT 370

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L   + ACA    L  G + H + I  GL   + ++N+L  +Y KCG ++ +  +FN ++
Sbjct: 371 LGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMN 430

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RDEVS+  ++  Y+Q     E++ LF +M  LG+K D V+  G ISAC+    +++G+ 
Sbjct: 431 VRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQR 490

Query: 180 IHGVTIRKHLHTHLFVANS----ILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
              + I ++    +  +N     ++D ++RSGRI+ A    + +P + D+  W TL+
Sbjct: 491 YFELMINEY---GIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLL 544



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 135/275 (49%), Gaps = 17/275 (6%)

Query: 45  LVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL-NFDLFLTNALTDMY 103
           ++R +P     P +    N++ A A    +R    I+AR +  G+   +LF  N L   Y
Sbjct: 29  IIRTLP----HPETFLHNNIVHAYA---LIR--SSIYARRVFDGIPQPNLFSWNNLLLAY 79

Query: 104 AKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSF 161
           +K G L+  +  F  +  RD V++N+LI GYS +     ++  ++ M +        V+ 
Sbjct: 80  SKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTL 139

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           M  +   ++   +  GK+IHG  I+    ++L V + +LD Y++ G I  A K+F  L  
Sbjct: 140 MTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDD 199

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
           +++  +NTL+ G    G ++ A+ LF  M +     D VS+ A++   +  G+ ++  + 
Sbjct: 200 RNTVMYNTLMGGLLACGMIEDALQLFRGMEK-----DSVSWSAMIKGLAQNGMEKEAIEC 254

Query: 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
           F EM+ + +K  +  +  ++   G  G + D  ++
Sbjct: 255 FREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQI 289



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 4/128 (3%)

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           +   I  C  L A +  K IHG  IR   H   F+ N+I+  Y        A ++FD +P
Sbjct: 6   YSAQIKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIP 65

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
             +  SWN L+L Y   G +      FE + +     D V++  ++   S  GLV    K
Sbjct: 66  QPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVK 121

Query: 281 YFDEMQAD 288
            ++ M  D
Sbjct: 122 AYNTMMKD 129


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 164/412 (39%), Positives = 248/412 (60%), Gaps = 23/412 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  + E+N+VSW +M+A + ++     A+ L+++M       + V 
Sbjct: 295 MYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVA 354

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T++L ACAR   L  GK++H  I    +  +LF+ NAL DMYAKCG +  A +VF+ + 
Sbjct: 355 ITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMV 414

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+N ++                       +K D  +    + ACA+L+A+++GKE
Sbjct: 415 VKDIISWNTMVGE---------------------LKPDSRTMACILPACASLSALERGKE 453

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R    +   VAN+++D Y + G + LA  +FD +P KD  SW  +I GYGM G 
Sbjct: 454 IHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGY 513

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + AI  F  MR+ G+  D VS+I+IL ACSH GL+E+G ++F  M+ D +++P   HYA
Sbjct: 514 GNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYA 573

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLL R G +  A K I+ LP+ PDA IWGALL  CRIY ++EL    AE +F L+P+
Sbjct: 574 CMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPE 633

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
           + GYY+LL+N+YAEA K +E  ++RE +  +  +KNPGCSW++ +  V  FV
Sbjct: 634 NTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFV 685



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 167/412 (40%), Gaps = 77/412 (18%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQ-----NRLELKALQLVREMPIHNEFPNS 58
           +S  P   S       +  +  +NA + +F Q     N +EL  +    E+        +
Sbjct: 47  RSCIPVRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELVCMCQKSEL-------ET 99

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA------ 112
            T  +VL  CA    L  GK++H+ I    +  D  L   L   YA CG L         
Sbjct: 100 KTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDT 159

Query: 113 ---QNVFNISF-------------------------------------------RDEVSY 126
              +NV+  +F                                           RD +S+
Sbjct: 160 MEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISW 219

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           N +I GY         L ++ +M  LG+  D+ + +  +  CAN   +  GK +H + I+
Sbjct: 220 NSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIK 279

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
                 +  +N++LD Y++ G +D A ++F+ +  ++  SW ++I GY   G  D AI L
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIIL 339

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
            + M ++GV  D V+  +IL AC+  G ++ GK   D ++A+++         ++D+  +
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAK 399

Query: 307 AGLMEDAVKLIKNLPV-------------EPDANIWGALLGACRIYGNVELG 345
            G ME A  +   + V             +PD+     +L AC     +E G
Sbjct: 400 CGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERG 451



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 109/270 (40%), Gaps = 29/270 (10%)

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           YN  I+ + Q  D   ++ L    +   +  +  ++   +  CA L ++  GK++H +  
Sbjct: 69  YNAKILHFCQLGDLENAMELVCMCQKSEL--ETKTYGSVLQLCAGLKSLTDGKKVHSIIK 126

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
              +     +   ++ FY   G +    ++FD +  K+   WN ++  Y  +G+   +I 
Sbjct: 127 SNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           LF+ M E G+                G   E   + FD++    V    + +  M+    
Sbjct: 187 LFKIMVEKGI---------------EGKRPESASELFDKLCDRDV----ISWNSMISGYV 227

Query: 306 RAGLMEDAVKLIKN---LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP---QH 359
             GL E  + + K    L ++ D     ++L  C   G + LG   A H   +K    + 
Sbjct: 228 SNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG--KAVHSLAIKSSFERR 285

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSR 389
             +   L +MY++ G  D A +V E M  R
Sbjct: 286 INFSNTLLDMYSKCGDLDGALRVFEKMGER 315


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  314 bits (805), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 171/432 (39%), Positives = 255/432 (59%), Gaps = 19/432 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNI----VSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           Y+++ R   A  LF  + E+NI    V+W A++  +AQ     +AL + R+M      PN
Sbjct: 440 YSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPN 499

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD--------LFLTNALTDMYAKCGCL 109
            VTL ++L AC     L  GKE H   I+  LN D        L + N L DMYAKC   
Sbjct: 500 VVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQST 559

Query: 110 NLAQNVFNI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL--GMKHDVVSFMGA 164
            +A+ +F+      RD V++ ++I GY+Q  D + +L LFS M  +   +K +  +   A
Sbjct: 560 EVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCA 619

Query: 165 ISACANLAAIKQGKEIHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
           + ACA LAA++ G+++H   +R  +    LFVAN ++D Y++SG +D A  +FD +P ++
Sbjct: 620 LVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRN 679

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283
           + SW +L+ GYGM G  + A+ +F+ MR+  +  D ++++ +L ACSH G+V+ G  +F+
Sbjct: 680 AVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFN 739

Query: 284 EMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
            M  D  V P   HYACMVDL GRAG + +A+KLI  +P+EP   +W ALL ACR++ NV
Sbjct: 740 RMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNV 799

Query: 343 ELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQT 402
           ELG +AA  L  L+  + G Y LLSN+YA A +W + +++R  MK    KK PGCSW+Q 
Sbjct: 800 ELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQG 859

Query: 403 RDEVQDFVVNDR 414
           R  V  F V DR
Sbjct: 860 RKGVATFYVGDR 871



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 155/299 (51%), Gaps = 9/299 (3%)

Query: 2   YAKSSRPAEASYLFHNI--AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           Y  S+  A A  L   +  +  ++  WN ++              L R+M      P+  
Sbjct: 201 YIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHY 260

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
           T   V  ACA    L  G  +HA + R G   ++F+ NA+  MY KCG L  A N+F+  
Sbjct: 261 TFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDL 320

Query: 118 --ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFMGAISACANLAA 173
                +D VS+N ++  Y   SD + +L+LF +M  R L M  DV+S +  + ACA+LAA
Sbjct: 321 CHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHL-MSPDVISLVNILPACASLAA 379

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
             +G+++HG +IR  L   +FV N+++D Y + G+++ ANK+F  +  KD  SWN ++ G
Sbjct: 380 SLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTG 439

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
           Y   G ++ A++LFE M E+ +  D V++ A++T  +  G   +    F +M     +P
Sbjct: 440 YSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRP 498



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+KS     A  +F N+ ++N VSW +++  +  +     AL++  EM      P+ +T
Sbjct: 658 MYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGIT 717

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
              VL AC+    +  G     R+ +  G++        + D++ + G L  A  + N
Sbjct: 718 FLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLIN 775


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  314 bits (805), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 158/400 (39%), Positives = 242/400 (60%), Gaps = 2/400 (0%)

Query: 22  NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81
           + V    M++ +  N    +AL+  R +      P SVT +++ PA A    L  GKE+H
Sbjct: 325 DTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELH 384

Query: 82  ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCS 140
             II+  L+    + +A+ DMYAKCG L+LA  VFN I+ +D + +N +I   SQ     
Sbjct: 385 GSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPG 444

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
           E+++LF +M + G ++D VS  GA+SACANL A+  GKEIHG+ I+  L + L+  +S++
Sbjct: 445 EAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLI 504

Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
           D Y + G ++ + ++FD +  K+  SWN++I  YG  G++   + LF  M  +G+  D V
Sbjct: 505 DMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHV 564

Query: 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HYACMVDLLGRAGLMEDAVKLIKN 319
           +++ I++AC H G V++G +Y+  M  +   P  M HYAC+ D+ GRAG + +A + I +
Sbjct: 565 TFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINS 624

Query: 320 LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA 379
           +P  PDA +WG LLGAC I+GNVEL   A++HLF L P + GYY+LL+N+ A AGKW + 
Sbjct: 625 MPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKV 684

Query: 380 SKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
            KVR +MK R  +K PG SW++  +    FV  D     T
Sbjct: 685 LKVRSIMKERGVRKVPGYSWIEVNNATHMFVAADGSHPLT 724



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/421 (29%), Positives = 195/421 (46%), Gaps = 47/421 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  LF  + + ++VSWN +++ + QN L  +A  L R M      P+S+T
Sbjct: 203 MYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSIT 262

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ-NVFNIS 119
             + LP       L+  KEIH  IIR  +  D+FL +AL D+Y KC  + +AQ N+   S
Sbjct: 263 FASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSS 322

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V    +I GY       E+L  F  +    MK   V+F     A A LAA+  GKE
Sbjct: 323 SFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKE 382

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  I+  L     V ++ILD Y + GR+DLA ++F+ +  KD+  WN++I      G 
Sbjct: 383 LHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGR 442

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSH----------GGLVEKG----------- 278
              AINLF  M  +G  YD VS    L+AC++           GL+ KG           
Sbjct: 443 PGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESS 502

Query: 279 --------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---P 321
                         ++ FD MQ    +  E+ +  ++   G  G +++ + L   +    
Sbjct: 503 LIDMYAKCGNLNFSRRVFDRMQ----EKNEVSWNSIISAYGNHGDLKECLALFHEMLRNG 558

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQHCGYYILLSNMYAEAGKWDE 378
           ++PD   +  ++ AC   G V+ G     HL   +   P    +Y  +++M+  AG+  E
Sbjct: 559 IQPDHVTFLGIISACGHAGQVDEGI-RYYHLMTEEYGIPARMEHYACVADMFGRAGRLHE 617

Query: 379 A 379
           A
Sbjct: 618 A 618



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 84/246 (34%), Positives = 136/246 (55%), Gaps = 3/246 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R   A  +F+ I EK+ + WN+M+ + +QN    +A+ L R+M +     + V+
Sbjct: 405 MYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVS 464

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++  L ACA    L  GKEIH  +I+  L  DL+  ++L DMYAKCG LN ++ VF+ + 
Sbjct: 465 ISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQ 524

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
            ++EVS+N +I  Y    D  E L+LF EM   G++ D V+F+G ISAC +   + +G +
Sbjct: 525 EKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIR 584

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KDSASWNTLILGYGML 237
             H +T    +   +     + D + R+GR+  A +  + +P   D+  W TL+    + 
Sbjct: 585 YYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIH 644

Query: 238 GEVDTA 243
           G V+ A
Sbjct: 645 GNVELA 650



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 136/267 (50%), Gaps = 1/267 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY ++    +A  LF+ +      +WN M+  F        AL    +M      P+  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
              V+ AC     ++ GK +H  +   GL  D+F+ ++L  +YA+ G L+ AQ +F NI 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V +N+++ GY +  D   ++ +F EMR   +K + V+F   +S CA+ A +  G +
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+ +   L     VAN++L  Y++   +  A K+FD LP  D  SWN +I GY   G 
Sbjct: 181 LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGL 240

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAIL 266
           +  A +LF  M   G+  D +++ + L
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFL 267



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 118/254 (46%), Gaps = 8/254 (3%)

Query: 102 MYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS 160
           MY + G L  A+N+F  +      ++N +I G++     + +L  + +M   G+  D  +
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           F   + AC  L ++K GK +H       L   +FV +S++  Y  +G +  A  +FD +P
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            KDS  WN ++ GY   G+   AI +F  MR   +  + V++  +L+ C+   +++ G +
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
                    ++        ++ +  +   ++ A KL   LP + D   W  +     I G
Sbjct: 181 LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLP-QSDLVSWNGI-----ISG 234

Query: 341 NVELGAWA-AEHLF 353
            V+ G    AEHLF
Sbjct: 235 YVQNGLMGEAEHLF 248


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  314 bits (805), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 162/415 (39%), Positives = 250/415 (60%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA     A A  LF  + E  +V WNA++  + +N   ++ +++ + M       + +T
Sbjct: 163 MYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEIT 222

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+ AC R    + GK +   +  KGL  +  L  AL DMYAKCG L  A+ +F+ + 
Sbjct: 223 LVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQ 282

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V+++ +I GY+Q   C E+L+LFSEM+L  ++ + V+ +  +SACA L A++ GK 
Sbjct: 283 SRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKW 342

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H    RK L   + +  +++DFY + G ID A + F+ +PVK+S +W  LI G    G 
Sbjct: 343 VHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGR 402

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LF +MR+  +    V++I +L ACSH  LVE+G+++FD M  D  +KP   HY 
Sbjct: 403 GREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYG 462

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGRAGL+++A + I+ +P+EP+A IW ALL +C ++ NVE+G  A + +  L P 
Sbjct: 463 CVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPS 522

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           H G YILLSN+YA  G+W  A+ +R+ MK R  +K PGCS ++    V +F   D
Sbjct: 523 HSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAED 577



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 151/294 (51%), Gaps = 3/294 (1%)

Query: 42  ALQLVREM-PIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100
           AL L  EM  + +  P+  T+   L +C+R   L  G+ I A  +++GL  D F+ ++L 
Sbjct: 102 ALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLI 161

Query: 101 DMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
            MYA C  +  AQ +F+ +     V +N +I  Y +  +  E + +F  M  +G+  D +
Sbjct: 162 HMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEI 221

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           + +  ++AC  +   K GK +      K L  +  +  +++D Y + G +  A ++FD +
Sbjct: 222 TLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGM 281

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
             +D  +W+ +I GY    +   A+ LF  M+   V  + V+ +++L+AC+  G +E GK
Sbjct: 282 QSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGK 341

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                ++   +  T +    +VD   + G ++DAV+  +++PV+ ++  W AL+
Sbjct: 342 WVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALI 394



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 137/328 (41%), Gaps = 51/328 (15%)

Query: 109 LNLAQNVFNISFRDEVS---YNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGA 164
           L  A ++F +  R  +S   YN+L+          ++L LF EM  +  +  D  +   A
Sbjct: 66  LPYAVSLFRLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACA 125

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           + +C+ +  +  G+ I    +++ L    FV +S++  Y     +  A  +FD +     
Sbjct: 126 LKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGV 185

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC--------------- 269
             WN +I  Y   G     + +F+ M E GV +D ++ ++++TAC               
Sbjct: 186 VMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEY 245

Query: 270 -SHGGLVE-------------------KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
               GLV                    K ++ FD MQ+  V    + ++ M+    +A  
Sbjct: 246 VDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDV----VAWSAMISGYTQADQ 301

Query: 310 MEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL- 365
             +A+ L   +    VEP+     ++L AC + G +E G W   H ++ + +     IL 
Sbjct: 302 CREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWV--HSYIRRKRLSLTIILG 359

Query: 366 --LSNMYAEAGKWDEASKVRELMKSREA 391
             L + YA+ G  D+A +  E M  + +
Sbjct: 360 TALVDFYAKCGCIDDAVEAFESMPVKNS 387


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 157/410 (38%), Positives = 251/410 (61%), Gaps = 2/410 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A  +F  ++ +N+VSWN M+  +AQN    +A     +M      P +V++
Sbjct: 288 YFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSM 347

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
              L ACA    L  G+ +H  +  K + FD+ + N+L  MY+KC  +++A +VF N+  
Sbjct: 348 MGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKH 407

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  V++N +I+GY+Q    +E+L+LF EM+   +K D  + +  I+A A+L+  +Q K I
Sbjct: 408 KTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWI 467

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG+ IR  +  ++FV  +++D + + G I  A K+FD +  +   +WN +I GYG  G  
Sbjct: 468 HGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHG 527

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             A++LF  M+   V  + +++++++ ACSH GLVE+G  YF+ M+ +  ++PT  HY  
Sbjct: 528 REALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGA 587

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGRAG ++DA K I+++PV+P   + GA+LGACRI+ NVELG   A+ LF L P  
Sbjct: 588 MVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDD 647

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
            GY++LL+NMYA A  WD+ ++VR  M+ +  +K PGCS V+ R+EV  F
Sbjct: 648 GGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTF 697



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 141/280 (50%), Gaps = 1/280 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           ++ K +   EA+ +F  +  K  V ++ M+  +A+N     A++    M      P    
Sbjct: 85  LFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYD 144

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T +L        LR G+EIH  +I  G   +LF   A+ ++YAKC  +  A  +F  + 
Sbjct: 145 FTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMP 204

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N ++ GY+Q      ++ +  +M+  G K D ++ +  + A A+L A++ G+ 
Sbjct: 205 QRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRS 264

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG   R      + VA ++LD Y + G +  A  +F  +  ++  SWNT+I GY   GE
Sbjct: 265 IHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGE 324

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
            + A   F  M ++GV    VS +  L AC++ G +E+G+
Sbjct: 325 SEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGR 364



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/271 (32%), Positives = 143/271 (52%), Gaps = 22/271 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  R   A+ +F N+  K +V+WNAM+  +AQN    +AL L  EM  H+  P+S T
Sbjct: 388 MYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFT 447

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
           L +V+ A A     R  K IH   IR  ++ ++F+  AL D +AKCG +  A+ +F++  
Sbjct: 448 LVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQ 507

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
            R  +++N +I GY       E+L LF+EM+   +K + ++F+  I+AC++   +++G  
Sbjct: 508 ERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMY 567

Query: 178 -----KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
                KE +G      L   +    +++D   R+GR+D A K    +PVK   +    +L
Sbjct: 568 YFESMKENYG------LEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAML 621

Query: 233 GYGM------LGEVDTAINLFEAMREDGVGY 257
           G         LGE  TA  LF+   +DG GY
Sbjct: 622 GACRIHKNVELGE-KTADELFDLDPDDG-GY 650


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 161/441 (36%), Positives = 261/441 (59%), Gaps = 28/441 (6%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
            MY    +P +   +F  +  + +  WNA++A +A+N  + +AL+L  EM   +EF PN+ 
Sbjct: 579  MYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNAT 638

Query: 60   TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
            T  +VLPAC R       + IH  I+++G   D ++ NAL DMY++ G + +++ +F  +
Sbjct: 639  TFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRM 698

Query: 119  SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL------------------LGMKHDVVS 160
            + RD VS+N +I G        ++L+L  EM+                   +  K + V+
Sbjct: 699  NKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVT 758

Query: 161  FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
             M  +  CA LAA+ +GKEIH   +++ L   + V ++++D Y + G ++LA+++FD +P
Sbjct: 759  LMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMP 818

Query: 221  VKDSASWNTLILGYGMLGEVDTAINLFEAMREDG------VGYDPVSYIAILTACSHGGL 274
            +++  +WN LI+ YGM G+ + A+ LF  M   G      +  + V+YIAI  ACSH G+
Sbjct: 819  IRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGM 878

Query: 275  VEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD-ANIWGAL 332
            V++G   F  M+A   V+P   HYAC+VDLLGR+G +++A +LI  +P   +  + W +L
Sbjct: 879  VDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSL 938

Query: 333  LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392
            LGACRI+ +VE G  AA+HLF+L+P    +Y+L+SN+Y+ AG WD+A  VR+ MK    +
Sbjct: 939  LGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVR 998

Query: 393  KNPGCSWVQTRDEVQDFVVND 413
            K PGCSW++  DEV  F+  D
Sbjct: 999  KEPGCSWIEHGDEVHKFLSGD 1019



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 199/421 (47%), Gaps = 39/421 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+  R  +A  LF     K++VSWN ++++ +QN    +AL  V  M +    P+ VT
Sbjct: 477 MYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVT 536

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           L +VLPAC++   LR G+EIH   +R G L  + F+  AL DMY  C      + VF+  
Sbjct: 537 LASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGV 596

Query: 120 FRDEVS-YNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQG 177
            R  V+ +N L+ GY++     ++L LF EM        +  +F   + AC         
Sbjct: 597 VRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDK 656

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + IHG  +++      +V N+++D Y+R GR++++  IF  +  +D  SWNT+I G  + 
Sbjct: 657 EGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVC 716

Query: 238 GEVDTAINLFEAMR----------------EDGVGYDP--VSYIAILTACSHGGLVEKGK 279
           G  D A+NL   M+                + GV + P  V+ + +L  C+    + KGK
Sbjct: 717 GRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGK 776

Query: 280 KYFDEMQADSVKPT-EMHYA---CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
               E+ A +VK    M  A    +VD+  + G +  A ++   +P+  +   W  L+ A
Sbjct: 777 ----EIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIR-NVITWNVLIMA 831

Query: 336 CRIYGNVE--------LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
             ++G  E        + A    +  +++P    Y  + +   + +G  DE   +   MK
Sbjct: 832 YGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAAC-SHSGMVDEGLHLFHTMK 890

Query: 388 S 388
           +
Sbjct: 891 A 891



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 167/362 (46%), Gaps = 36/362 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F +I +++ VSWN+M+A   +      +L L R M   N  P S T
Sbjct: 376 MYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFT 435

Query: 61  LTNVLPACA--RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
           L +V  AC+  RG  +R GK++HA  +R G +   +  NAL  MYA+ G +N A+ +F +
Sbjct: 436 LVSVAHACSHVRGG-VRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGV 493

Query: 119 -SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              +D VS+N +I   SQ     E+L     M + G++ D V+    + AC+ L  ++ G
Sbjct: 494 FDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIG 553

Query: 178 KEIHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           +EIH   +R   L  + FV  +++D Y    +      +FD +  +  A WN L+ GY  
Sbjct: 554 REIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYAR 613

Query: 237 LGEVDTAINLF-EAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG---KKY 281
               D A+ LF E + E     +  ++ ++L AC            HG +V++G    KY
Sbjct: 614 NEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKY 673

Query: 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
                             ++D+  R G +E +  +   +  + D   W  ++  C + G 
Sbjct: 674 VQN--------------ALMDMYSRMGRVEISKTIFGRMN-KRDIVSWNTMITGCIVCGR 718

Query: 342 VE 343
            +
Sbjct: 719 YD 720



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 7/213 (3%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKG--LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           VL A A  H L  GK+IHA + + G      + + N+L +MY KCG L  A+ VF+ I  
Sbjct: 336 VLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPD 395

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL-AAIKQGKE 179
           RD VS+N +I    +  +   SL LF  M    +     + +    AC+++   ++ GK+
Sbjct: 396 RDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQ 455

Query: 180 IHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +H  T+R   L T  +  N+++  Y R GR++ A  +F     KD  SWNT+I       
Sbjct: 456 VHAYTLRNGDLRT--YTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQND 513

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271
             + A+     M  DGV  D V+  ++L ACS 
Sbjct: 514 RFEEALMYVYLMIVDGVRPDGVTLASVLPACSQ 546



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 21/162 (12%)

Query: 172 AAIKQGKEIHGVTIRKHLHTHLF-----------VANSILDFYTRSGRIDLANKIFDCLP 220
           A +K    +H + + K +H H+F           VANS+++ Y + G +  A ++FD +P
Sbjct: 335 AVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIP 394

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY--IAILTACSHGGLVEKG 278
            +D  SWN++I       E + +++LF  M  + V  DP S+  +++  ACSH   V  G
Sbjct: 395 DRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENV--DPTSFTLVSVAHACSH---VRGG 449

Query: 279 KKYFDEMQADSVKPTEMHY---ACMVDLLGRAGLMEDAVKLI 317
            +   ++ A +++  ++       +V +  R G + DA  L 
Sbjct: 450 VRLGKQVHAYTLRNGDLRTYTNNALVTMYARLGRVNDAKALF 491


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 251/416 (60%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    +EA  +F  +  ++ VSWNA++A   QN  E + L L   M      P+  T
Sbjct: 422 MYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFT 481

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL AC+    L  G EIH RII+ GL  D F+  AL DMY KCG +  A+ + + I 
Sbjct: 482 YGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIE 541

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N +I G++      ++ S F EM  + +K D  ++   + ACANLA++  GK+
Sbjct: 542 QQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQ 601

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  I+  LH+ +++ ++++D Y++ G +  +  +F+  P KD  +WN +I GY   G 
Sbjct: 602 IHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGL 661

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A+  FE M+ + V  +  ++++IL AC+H G ++KG  YF+ M  +  ++P   HY+
Sbjct: 662 GEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYS 721

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+D++GR+G + +A+KLI+ +P E DA IW  LL  C+I+GN+E+   A   +  L+P+
Sbjct: 722 CMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAILQLEPE 781

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
                ILLSN+YA+AG W + S++R++M+  + KK PGCSW++ +DEV  F+V ++
Sbjct: 782 DSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEVKDEVHAFLVGNK 837



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 194/421 (46%), Gaps = 38/421 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R  ++  +F  I  KN V W+A++A   QN   +  L+L +EM       +   
Sbjct: 220 MYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSI 279

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             +V  +CA    L+ G ++HA  ++     D+ +  A  DMYAKCG L  AQ +FN   
Sbjct: 280 YASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLP 339

Query: 121 RDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           +  +  YN +IVG  +     E+L  F  +   G+  + +S  GA SACA++     G++
Sbjct: 340 KHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQ 399

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H ++++  L +++ VANSILD Y +   +  A  +FD +  +D+ SWN +I  +   G 
Sbjct: 400 LHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGN 459

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            +  +NLF +M    +  D  +Y ++L ACS    +  G +  + +    +         
Sbjct: 460 EEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGA 519

Query: 300 MVDLLGRAGLMEDAVKL----------------------------------IKNLPVEPD 325
           ++D+  + G++E+A K+                                  +  + V+PD
Sbjct: 520 LIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPD 579

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWDEASKVR 383
              +  +L AC    +V LG      +  L+  H   YI   L +MY++ G   +++ V 
Sbjct: 580 NFTYAIVLDACANLASVGLGKQIHGQIIKLEL-HSDVYITSTLVDMYSKCGNMQDSALVF 638

Query: 384 E 384
           E
Sbjct: 639 E 639



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 177/369 (47%), Gaps = 13/369 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVT 60
           YA +     A+  F++  ++++VSWN+M++ F QN    K++ +  +M    E   +  T
Sbjct: 119 YADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTT 178

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL AC+       G ++H  I+R G   D+   +AL DMYAKC  L+ +  +F+ I 
Sbjct: 179 FAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIP 238

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ V ++ +I G  Q  +    L LF EM+ +G+      +     +CA L+A+K G +
Sbjct: 239 VKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQ 298

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++    + + V  + LD Y + G +  A +IF+ LP      +N +I+G     +
Sbjct: 299 LHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEK 358

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+  F+ + + G+G++ +S     +AC+      KG     ++ + SVK T     C
Sbjct: 359 GFEALQFFQLLLKSGLGFNEISLSGAFSACAS----IKGDLDGRQLHSLSVKSTLRSNIC 414

Query: 300 ----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE--LGAWAAEHLF 353
               ++D+ G+   + +A  +   +    DA  W A++ A    GN E  L  +A+    
Sbjct: 415 VANSILDMYGKCEALSEACCMFDEME-RRDAVSWNAVIAAHEQNGNEEETLNLFASMLRL 473

Query: 354 MLKPQHCGY 362
            ++P    Y
Sbjct: 474 RMEPDQFTY 482



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 146/305 (47%), Gaps = 36/305 (11%)

Query: 52  HNEFPNSV-TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN 110
             + P  + T ++++  C+  + L+PGK+ HAR+I  G   D++++N L  MY +C  LN
Sbjct: 36  QTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLN 95

Query: 111 LAQNVF-NISFRDEVSYNILIVGYS-------------------------------QTSD 138
            A  VF  +S RD +SYN +I GY+                               Q  +
Sbjct: 96  YAYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGE 155

Query: 139 CSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
           C +S+ +F +M R   +  D  +F   + AC+ L     G ++HG+ +R   +  +   +
Sbjct: 156 CRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGS 215

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
           ++LD Y +  R+D + KIF  +PVK+   W+ +I G     E    + LF+ M++ G+G 
Sbjct: 216 ALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGV 275

Query: 258 DPVSYIAILTACSHGGLVEKGKK-YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
               Y ++  +C+    ++ G + +   ++ D      +  A + D+  + G + DA ++
Sbjct: 276 SQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATL-DMYAKCGSLADAQRI 334

Query: 317 IKNLP 321
             +LP
Sbjct: 335 FNSLP 339


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 158/415 (38%), Positives = 251/415 (60%), Gaps = 2/415 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK    + A  +FH I  K + SWNA++  +AQ+     +L    +M      P++ T+
Sbjct: 424 YAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTV 483

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++L AC++   LR GKE+H  IIR  L  DLF+  ++  +Y  CG L   Q +F+ +  
Sbjct: 484 CSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMED 543

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
              VS+N +I G+ Q      +L LF +M L G++   +S M    AC+ L +++ G+E 
Sbjct: 544 NSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREA 603

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++  L  + F+A SI+D Y ++G I  ++K+F+ L  K +ASWN +I+GYGM G  
Sbjct: 604 HAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRA 663

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             AI LFE M+  G   D ++++ +LTAC+H GL+ +G +Y D+M++   +KP   HYAC
Sbjct: 664 KEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYAC 723

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           ++D+LGRAG +++A+++   +  EPD  IW +LL  CRI+ N+E+G   A  LF+L+P+ 
Sbjct: 724 VIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEK 783

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
              Y+LLSN+YA  GKWD+  +VR+ MK    +K+ GCSW++   +V  FVV +R
Sbjct: 784 PENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGER 838



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 198/432 (45%), Gaps = 58/432 (13%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y      ++A  LF  + E+N+VSWN+M+  F+ N  +   +            P+  T+
Sbjct: 232 YGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGDDGAFM------------PDVATV 279

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF- 120
             VLP CAR   +  GK +H   ++  L+ +L + NAL DMY+K GC+  +Q +F ++  
Sbjct: 280 VTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNN 339

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG---MKHDVVSFMGAISACANLAAIKQG 177
           ++ VS+N ++ G+S   D   +  L  +M L G   +K D V+ + A+  C + + +   
Sbjct: 340 KNVVSWNTMVGGFSAEGDIHGTFDLLRQM-LAGSEDVKADEVTILNAVPVCFDESVLPSL 398

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           KE+H  ++++       +AN+ +  Y + G +  A ++F  +  K   SWN LI GY   
Sbjct: 399 KELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQS 458

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF-----DEMQAD---- 288
            +   +++    M+  G+  D  +  ++L+ACS    +  GK+       + ++ D    
Sbjct: 459 SDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVY 518

Query: 289 -SVKPTEMHYA--CMVDLLGRA-------------------GLMEDAVKLIKNL---PVE 323
            SV    +H    C V +L  A                   G  E A+ L + +    ++
Sbjct: 519 LSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQ 578

Query: 324 PDANIWGALLGACRIYGNVELG----AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA 379
           P       + GAC +  ++ LG    A+A +HL      +      + +MYA+ G   ++
Sbjct: 579 PCGISMMTVFGACSLLPSLRLGREAHAYALKHLL---EDNAFIACSIIDMYAKNGAITQS 635

Query: 380 SKVRELMKSREA 391
           SKV   +K + A
Sbjct: 636 SKVFNGLKEKSA 647



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 130/273 (47%), Gaps = 16/273 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSV 59
           MYA    P ++   F  +  KN+  WNA+++++++N L  + L++  +M       P++ 
Sbjct: 129 MYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNF 188

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI- 118
           T   V+ ACA    +  G  +H  +++ GL  DLF+ NAL   Y   G ++ A  +F+I 
Sbjct: 189 TFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIM 248

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ VS+N +I  +S   D    +             DV + +  +  CA    I  GK
Sbjct: 249 PERNLVSWNSMIRVFSDNGDDGAFMP------------DVATVVTVLPVCAREREIGVGK 296

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +HG  ++  L   L V N+++D Y++ G I  +  IF     K+  SWNT++ G+   G
Sbjct: 297 GVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEG 356

Query: 239 EVDTAINLFEAMR--EDGVGYDPVSYIAILTAC 269
           ++    +L   M    + V  D V+ +  +  C
Sbjct: 357 DIHGTFDLLRQMLAGSEDVKADEVTILNAVPVC 389



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 118/234 (50%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y           LF  + + ++VSWN ++    QN    +AL L R+M ++   P  ++
Sbjct: 524 LYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGIS 583

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  V  AC+    LR G+E HA  ++  L  + F+  ++ DMYAK G +  +  VFN + 
Sbjct: 584 MMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLK 643

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
            +   S+N +I+GY       E++ LF EM+  G   D ++F+G ++AC +   + +G +
Sbjct: 644 EKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLR 703

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
            +  +     L  +L     ++D   R+G++D A ++   +  + D   WN+L+
Sbjct: 704 YLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLL 757



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 145/325 (44%), Gaps = 28/325 (8%)

Query: 30  VANFAQNRLELKALQLVREMPIHNEFPNSV------TLTNVLPACARGHFLRPGKEIHAR 83
           ++NF +     K+ ++V+E    +E  + V       L  +L A  +   +  G++IH  
Sbjct: 50  ISNFCETGDLDKSFRVVQEFAGDDESSSDVFLLVREALGLLLQASGKRKDIEMGRKIHHL 109

Query: 84  II-RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSE 141
           +     L  D  L   +  MYA CG  + +++ F+ +  ++   +N +I  YS+     E
Sbjct: 110 VSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHE 169

Query: 142 SLSLFSEMRLLGMKH---DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
            L +F  ++++   H   D  +F   I ACA ++ +  G  +HG+ ++  L   LFV N+
Sbjct: 170 VLEMF--IKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNA 227

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY- 257
           ++ FY   G +  A K+FD +P ++  SWN++             I +F    +DG    
Sbjct: 228 LVSFYGTHGFVSDALKLFDIMPERNLVSWNSM-------------IRVFSDNGDDGAFMP 274

Query: 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317
           D  + + +L  C+    +  GK         S+    +    ++D+  + G + D+ ++I
Sbjct: 275 DVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDS-QMI 333

Query: 318 KNLPVEPDANIWGALLGACRIYGNV 342
             L    +   W  ++G     G++
Sbjct: 334 FKLNNNKNVVSWNTMVGGFSAEGDI 358


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 169/449 (37%), Positives = 254/449 (56%), Gaps = 37/449 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++     A      + EK +V+WNAM++ +  +   L+AL++ R+M +     +  T 
Sbjct: 235 YVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTY 294

Query: 62  TNVLPACARGHFLRPGKEIHARIIRK----GLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           T+VL ACA   F   GK++HA I+R      L+F L + NAL  +Y KCG ++ A+ VFN
Sbjct: 295 TSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFN 354

Query: 118 -ISFRDEVSYNILIVGY-------------------------------SQTSDCSESLSL 145
            +  +D VS+N ++ GY                               +Q     ESL L
Sbjct: 355 QMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKL 414

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           F+ M+  G +    +F GAI ACA LAA+  G+++H   +R    + L   N+++  Y +
Sbjct: 415 FNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAK 474

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
            G ++ A+ +F  +P  DS SWN +I   G  G    A+ LFE M ++ +  D ++++ +
Sbjct: 475 CGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTV 534

Query: 266 LTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           L+ CSH GLVE+G +YF  M     + P E HYA M+DLL RAG   +A  +I+ +PVEP
Sbjct: 535 LSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEP 594

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
              IW ALL  CRI+GN++LG  AAE LF L PQH G Y+LLSNMYA  G+WD+ +KVR+
Sbjct: 595 GPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRK 654

Query: 385 LMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           LM+ +  KK PGCSW++  ++V  F+V+D
Sbjct: 655 LMRDKGVKKEPGCSWIEVENKVHVFLVDD 683



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 162/342 (47%), Gaps = 50/342 (14%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
           A +S  A   +    +  ++ V +NAM+  ++ N     A++L R++  +   P++ T T
Sbjct: 94  AGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFT 153

Query: 63  NVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG---------CLNLA 112
           +VL A A      +  ++IH  +++ G  F   + NAL  ++ KC           +  A
Sbjct: 154 SVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAA 213

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCS------------------------------- 140
           + +F+ ++ RDE+S+  +I GY +  +                                 
Sbjct: 214 RKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFL 273

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH----LHTHLFVA 196
           E+L +F +M LLG++ D  ++   +SACAN      GK++H   +R      L   L V 
Sbjct: 274 EALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVN 333

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N++   Y + G++D A ++F+ +PVKD  SWN ++ GY   G +D A + FE M E  + 
Sbjct: 334 NALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNL- 392

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
              +++  +++  +  G  E+  K F+ M+++  +P +  +A
Sbjct: 393 ---LTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFA 431



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 58/348 (16%)

Query: 92  DLFLTNALTDMYAKCGCLNLAQNVF---NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
           D+     L   ++  G  NLA+ +F    +  RD V YN +I GYS  +D   ++ LF +
Sbjct: 80  DIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRD 139

Query: 149 MRLLGMKHDVVSFMGAISACANLAAI-KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           +   G + D  +F   + A A +    KQ ++IH   ++        V N++L  + +  
Sbjct: 140 LLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCA 199

Query: 208 R---------IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED----- 253
                     +  A K+FD +  +D  SW T+I GY   GE+D A    + M E      
Sbjct: 200 SSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAW 259

Query: 254 --------------------------GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
                                     G+ +D  +Y ++L+AC++ G    GK+    +  
Sbjct: 260 NAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILR 319

Query: 288 DSVKPTEMHYACMVD-----LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
              +P+ + ++  V+     L  + G +++A ++   +PV+ D   W A+L      G +
Sbjct: 320 TEPRPS-LDFSLSVNNALATLYWKCGKVDEARQVFNQMPVK-DLVSWNAILSGYVNAGRI 377

Query: 343 ELGAWAAEHLFMLKPQH--CGYYILLSNMYAEAGKWDEASKVRELMKS 388
           +     A+  F   P+     + +++S + A+ G  +E+ K+   MKS
Sbjct: 378 D----EAKSFFEEMPERNLLTWTVMISGL-AQNGFGEESLKLFNRMKS 420



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 36/77 (46%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  LF  +   + VSWNAM+A   Q+    +AL+L   M   +  P+ +T
Sbjct: 471 MYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRIT 530

Query: 61  LTNVLPACARGHFLRPG 77
              VL  C+    +  G
Sbjct: 531 FLTVLSTCSHAGLVEEG 547


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  314 bits (804), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 157/400 (39%), Positives = 243/400 (60%), Gaps = 2/400 (0%)

Query: 22  NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81
           + V    M++ +  N    +AL+  R +      P SVT +++ PA A    L  GKE+H
Sbjct: 325 DTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELH 384

Query: 82  ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCS 140
             II+  L+    + +A+ DMYAKCG L+LA  VFN I+ +D + +N +I   SQ     
Sbjct: 385 GSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPG 444

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
           E+++LF +M + G ++D VS  GA+SACANL A+  GKEIHG+ I+  L + L+  +S++
Sbjct: 445 EAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLI 504

Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
           D Y + G ++ + ++FD +  ++  SWN++I  YG  G++   + LF  M  +G+  D V
Sbjct: 505 DMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHV 564

Query: 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HYACMVDLLGRAGLMEDAVKLIKN 319
           +++ I++AC H G V++G +Y+  M  +   P  M HYAC+ D+ GRAG +++A + I +
Sbjct: 565 TFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINS 624

Query: 320 LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA 379
           +P  PDA +WG LLGAC I+GNVEL   A++HLF L P + GYY+LL+N+ A AGKW + 
Sbjct: 625 MPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKV 684

Query: 380 SKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
            KVR +MK R  +K PG SW++  +    FV  D     T
Sbjct: 685 LKVRSIMKERGVRKVPGYSWIEVNNATHMFVAADGSHPLT 724



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/421 (29%), Positives = 194/421 (46%), Gaps = 47/421 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  LF    + ++VSWN +++ + QN L  +A  L R M      P+S+T
Sbjct: 203 MYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSIT 262

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             + LP       L+  KEIH  IIR  +  D+FL +AL D+Y KC  + +AQ +    S
Sbjct: 263 FASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSS 322

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V    +I GY       E+L  F  +    MK   V+F     A A LAA+  GKE
Sbjct: 323 SFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKE 382

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  I+  L     V ++ILD Y + GR+DLA ++F+ +  KD+  WN++I      G 
Sbjct: 383 LHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGR 442

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSH----------GGLVEKG----------- 278
              AINLF  M  +G  YD VS    L+AC++           GL+ KG           
Sbjct: 443 PGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESS 502

Query: 279 --------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---P 321
                         ++ FD MQ    +  E+ +  ++   G  G +++ + L   +    
Sbjct: 503 LIDMYAKCGNLNFSRRVFDRMQ----ERNEVSWNSIISAYGNHGDLKECLALFHEMLRNG 558

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQHCGYYILLSNMYAEAGKWDE 378
           ++PD   +  ++ AC   G V+ G     HL   +   P    +Y  +++M+  AG+ DE
Sbjct: 559 IQPDHVTFLGIISACGHAGQVDEGI-RYYHLMTEEYGIPARMEHYACVADMFGRAGRLDE 617

Query: 379 A 379
           A
Sbjct: 618 A 618



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 135/267 (50%), Gaps = 1/267 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY ++    +A  LF+ +      +WN M+  F        AL    +M      P+  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
              V+ AC     ++ GK +H  +   GL  D+F+ ++L  +YA+ G L+ AQ +F NI 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V +N+++ GY +  D   ++ +F EMR   +K + V+F   +S CA+ A +  G +
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+ +   L     VAN++L  Y++   +  A K+FD  P  D  SWN +I GY   G 
Sbjct: 181 LHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGL 240

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAIL 266
           +  A +LF  M   G+  D +++ + L
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFL 267



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 118/254 (46%), Gaps = 8/254 (3%)

Query: 102 MYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS 160
           MY + G L  A+N+F  +      ++N +I G++     + +L  + +M   G+  D  +
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           F   + AC  L ++K GK +H       L   +FV +S++  Y  +G +  A  +FD +P
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            KDS  WN ++ GY   G+   AI +F  MR   +  + V++  +L+ C+   +++ G +
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
                 +  ++        ++ +  +   ++ A KL    P + D   W  +     I G
Sbjct: 181 LHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSP-QSDLVSWNGI-----ISG 234

Query: 341 NVELGAWA-AEHLF 353
            V+ G    AEHLF
Sbjct: 235 YVQNGLMGEAEHLF 248


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  314 bits (804), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 160/417 (38%), Positives = 242/417 (58%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  I  KN+VSWN+M+A ++        ++L R M      P   T
Sbjct: 443 MYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTT 502

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L+++L AC+R   L+ GK IH  IIR  +  D+F+ ++L D+Y KCG +  A+NVF N+ 
Sbjct: 503 LSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP 562

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             + VS+N++I GY +     E+L +F++MR  G+K D ++F   + AC+ LA +++GKE
Sbjct: 563 KTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKE 622

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I   L  +  V  ++LD Y + G +D A  IF+ LP +D  SW ++I  YG  G+
Sbjct: 623 IHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQ 682

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LFE M++     D V+++AIL+ACSH GLV++G  YF++M A+   KP   HY+
Sbjct: 683 AFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYS 742

Query: 299 CMVDLLGRAGLMEDAVKLIKNLP-VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           C++DLLGR G + +A ++++  P +  D  +   L  AC ++  ++LG      L    P
Sbjct: 743 CLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDP 802

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
                YI+LSNMYA   KWDE  KVR  +K    KKNPGCSW++    +  FVV D+
Sbjct: 803 DDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDK 859



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 208/386 (53%), Gaps = 13/386 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK +   +A  LF  + E+++ SWN +++ + Q+    KAL+L  EM +    P+SVT
Sbjct: 342 MYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVT 401

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           LT V+ +CAR   L  GKEIH  ++R G   D F+++AL DMY KCGCL +A+ VF  I 
Sbjct: 402 LTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQ 461

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N +I GYS   D    + LF  M   G++  + +    + AC+    ++ GK 
Sbjct: 462 RKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKF 521

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  IR  +   +FV +S++D Y + G I  A  +F  +P  +  SWN +I GY  +G 
Sbjct: 522 IHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGS 581

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ +F  MR+ GV  D +++ ++L ACS   ++EKGK+  + +    ++  E+    
Sbjct: 582 YLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGA 641

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM----- 354
           ++D+  + G +++A+ +   LP E D   W +++ A   +G     A+ A  LF      
Sbjct: 642 LLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAAYGSHGQ----AFEALKLFEKMQQS 696

Query: 355 -LKPQHCGYYILLSNMYAEAGKWDEA 379
             KP    +  +LS   + AG  DE 
Sbjct: 697 DAKPDKVTFLAILSAC-SHAGLVDEG 721



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 203/421 (48%), Gaps = 44/421 (10%)

Query: 11  ASYLFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEF--PNSVTLTNVLPA 67
           A  +F  I    +I  WN ++A   +N + ++ L++   + +H  +  P++ T  +VL A
Sbjct: 249 AKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRL-LHFPYLKPDAFTYPSVLKA 307

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSY 126
           C+    +  GK +H  +I+ G   D+ + ++   MYAKC     A  +F+ +  RD  S+
Sbjct: 308 CSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASW 367

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           N +I  Y Q     ++L LF EM++ G K D V+    IS+CA L  +++GKEIH   +R
Sbjct: 368 NNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVR 427

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
                  FV+++++D Y + G +++A ++F+ +  K+  SWN++I GY + G+  + I L
Sbjct: 428 SGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIEL 487

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
           F  M E+G+     +  +IL ACS    ++ GK     +  + V+      + ++DL  +
Sbjct: 488 FRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFK 547

Query: 307 AGLMEDAVKLIKNLP----------------------------------VEPDANIWGAL 332
            G +  A  + +N+P                                  V+PDA  + ++
Sbjct: 548 CGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSV 607

Query: 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDEASKVRELMKSR 389
           L AC     +E G     H F+++ +     ++   L +MYA+ G  DEA  +   +  R
Sbjct: 608 LPACSQLAVLEKGKEI--HNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPER 665

Query: 390 E 390
           +
Sbjct: 666 D 666


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  314 bits (804), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 165/422 (39%), Positives = 256/422 (60%), Gaps = 12/422 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA S     A  +F  I  K++VSWNAM++ +A+     +AL+L +EM   N  P+  T+
Sbjct: 142 YASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTM 201

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL ACA+   +  G+++H+ I   G   +L + NAL D+Y+KCG +  A  +F  +S 
Sbjct: 202 VTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSC 261

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D VS+N LI GY+  +   E+L LF EM   G   + V+ +  + ACA+L AI  G+ I
Sbjct: 262 KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWI 321

Query: 181 HGVTIRKHLHTHLFVAN------SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           H V I K L     V N      S++D Y + G I+ A+++F+ +  K  +SWN +I G+
Sbjct: 322 H-VYIDKKLKD---VTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGF 377

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
            M G  +   +LF  MR++G+  D ++++ +L+ACSH G ++ G+  F  M  D  + P 
Sbjct: 378 AMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPK 437

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY CM+DLLG +GL ++A ++IK +P+EPD  IW +LL ACR +GN+EL    A +L 
Sbjct: 438 LEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLM 497

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            ++P++ G Y+LLSN+YA AG+WDE +KVR L+  +  KK PGCS ++   EV +F+V D
Sbjct: 498 KVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGD 557

Query: 414 RM 415
           ++
Sbjct: 558 KL 559



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 177/367 (48%), Gaps = 37/367 (10%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  I E N + WN M+  +A +   + AL+L   M      PNS T   +L +CA+   
Sbjct: 22  VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKA 81

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
              G++IH  +++ G   DL++  +L  MYA+ G L  A  VF+                
Sbjct: 82  FEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITG 141

Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
                           I  +D VS+N +I GY++T    E+L LF EM    ++ D  + 
Sbjct: 142 YASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTM 201

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           +  +SACA   +++ G+++H         ++L + N+++D Y++ G+++ A  +F+ L  
Sbjct: 202 VTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSC 261

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-- 279
           KD  SWNTLI GY  +     A+ LF+ M   G   + V+ ++IL AC+H G ++ G+  
Sbjct: 262 KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWI 321

Query: 280 -KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
             Y D+   D      +  + ++D+  + G +E A ++  ++ +    + W A++    +
Sbjct: 322 HVYIDKKLKDVTNAPSLRTS-LIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNAMIFGFAM 379

Query: 339 YGNVELG 345
           +G    G
Sbjct: 380 HGRANAG 386



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 5/236 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K  +   A  LF  ++ K++VSWN ++  +    L  +AL L +EM    E PN VT
Sbjct: 242 LYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 301

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR--KGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
           + ++LPACA    +  G+ IH  I +  K +     L  +L DMYAKCG +  A  VFN 
Sbjct: 302 IVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNS 361

Query: 119 SFRDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
                + S+N +I G++     +    LFS MR  G++ D ++F+G +SAC++   +  G
Sbjct: 362 MLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLG 421

Query: 178 KEI-HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
           + I   +T    +   L     ++D    SG    A ++   +P++ D   W +L+
Sbjct: 422 RHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLL 477



 Score = 45.4 bits (106), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 91/197 (46%), Gaps = 10/197 (5%)

Query: 197 NSILDFYTRSGRID---LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
           + +L+F   S   D    A  +F  +   +   WNT++ GY +  +  +A+ L+  M   
Sbjct: 1   SKLLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISL 60

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
           G+  +  ++  +L +C+     E+G++    +     +P    +  ++ +  + G +EDA
Sbjct: 61  GLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDA 120

Query: 314 VKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP-QHCGYYILLSNMYAE 372
            K+  +     D   + AL+      GN+     +A+ +F   P +    +  + + YAE
Sbjct: 121 HKVF-DRSSHRDVVSYTALITGYASSGNIR----SAQEMFDEIPVKDVVSWNAMISGYAE 175

Query: 373 AGKWDEASKV-RELMKS 388
            G + EA ++ +E+MK+
Sbjct: 176 TGSYKEALELFKEMMKT 192


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  313 bits (803), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 160/417 (38%), Positives = 242/417 (58%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  I  KN+VSWN+M+A ++        ++L R M      P   T
Sbjct: 251 MYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTT 310

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L+++L AC+R   L+ GK IH  IIR  +  D+F+ ++L D+Y KCG +  A+NVF N+ 
Sbjct: 311 LSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP 370

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             + VS+N++I GY +     E+L +F++MR  G+K D ++F   + AC+ LA +++GKE
Sbjct: 371 KTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKE 430

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I   L  +  V  ++LD Y + G +D A  IF+ LP +D  SW ++I  YG  G+
Sbjct: 431 IHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQ 490

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LFE M++     D V+++AIL+ACSH GLV++G  YF++M A+   KP   HY+
Sbjct: 491 AFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYS 550

Query: 299 CMVDLLGRAGLMEDAVKLIKNLP-VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           C++DLLGR G + +A ++++  P +  D  +   L  AC ++  ++LG      L    P
Sbjct: 551 CLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDP 610

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
                YI+LSNMYA   KWDE  KVR  +K    KKNPGCSW++    +  FVV D+
Sbjct: 611 DDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDK 667



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 208/386 (53%), Gaps = 13/386 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK +   +A  LF  + E+++ SWN +++ + Q+    KAL+L  EM +    P+SVT
Sbjct: 150 MYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVT 209

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           LT V+ +CAR   L  GKEIH  ++R G   D F+++AL DMY KCGCL +A+ VF  I 
Sbjct: 210 LTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQ 269

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N +I GYS   D    + LF  M   G++  + +    + AC+    ++ GK 
Sbjct: 270 RKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKF 329

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  IR  +   +FV +S++D Y + G I  A  +F  +P  +  SWN +I GY  +G 
Sbjct: 330 IHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGS 389

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ +F  MR+ GV  D +++ ++L ACS   ++EKGK+  + +    ++  E+    
Sbjct: 390 YLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGA 449

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM----- 354
           ++D+  + G +++A+ +   LP E D   W +++ A   +G     A+ A  LF      
Sbjct: 450 LLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAAYGSHGQ----AFEALKLFEKMQQS 504

Query: 355 -LKPQHCGYYILLSNMYAEAGKWDEA 379
             KP    +  +LS   + AG  DE 
Sbjct: 505 DAKPDKVTFLAILSAC-SHAGLVDEG 529



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 203/421 (48%), Gaps = 44/421 (10%)

Query: 11  ASYLFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEF--PNSVTLTNVLPA 67
           A  +F  I    +I  WN ++A   +N + ++ L++   + +H  +  P++ T  +VL A
Sbjct: 57  AKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRL-LHFPYLKPDAFTYPSVLKA 115

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSY 126
           C+    +  GK +H  +I+ G   D+ + ++   MYAKC     A  +F+ +  RD  S+
Sbjct: 116 CSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASW 175

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           N +I  Y Q     ++L LF EM++ G K D V+    IS+CA L  +++GKEIH   +R
Sbjct: 176 NNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVR 235

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
                  FV+++++D Y + G +++A ++F+ +  K+  SWN++I GY + G+  + I L
Sbjct: 236 SGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIEL 295

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
           F  M E+G+     +  +IL ACS    ++ GK     +  + V+      + ++DL  +
Sbjct: 296 FRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFK 355

Query: 307 AGLMEDAVKLIKNLP----------------------------------VEPDANIWGAL 332
            G +  A  + +N+P                                  V+PDA  + ++
Sbjct: 356 CGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSV 415

Query: 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDEASKVRELMKSR 389
           L AC     +E G     H F+++ +     ++   L +MYA+ G  DEA  +   +  R
Sbjct: 416 LPACSQLAVLEKGKEI--HNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPER 473

Query: 390 E 390
           +
Sbjct: 474 D 474


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  313 bits (803), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 154/411 (37%), Positives = 245/411 (59%), Gaps = 3/411 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +A  LF  + EK+ VSW AM+   AQN L  +A++  REM +     +     +VLPAC 
Sbjct: 223 DALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACG 281

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
               +  GK+IHA IIR      +++ +AL DMY KC CL+ A+ VF+ +  ++ VS+  
Sbjct: 282 GLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTA 341

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           ++VGY QT    E++ +F +M+  G+  D  +   AISACAN++++++G + HG  I   
Sbjct: 342 MVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSG 401

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L  ++ V+NS++  Y + G ID + ++F+ + V+D+ SW  ++  Y   G     I LF+
Sbjct: 402 LIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFD 461

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            M + G+  D V+   +++ACS  GLVEKG++YF  M ++  + P+  HY+CM+DL  R+
Sbjct: 462 KMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRS 521

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           G +E+A++ I  +P  PDA  W  LL ACR  GN+E+G WAAE L  L P H   Y LLS
Sbjct: 522 GRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLS 581

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
           ++YA  GKWD  +++R  M+ +  KK PG SW++ + ++  F  +D    +
Sbjct: 582 SIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPY 632



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 178/377 (47%), Gaps = 45/377 (11%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP---NS 58
           Y+K+   +E    F  + +++ V+WN ++  ++ + L   A++    M    +F      
Sbjct: 82  YSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM--MRDFSANLTR 139

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-- 116
           VTL  +L   +    +  GK+IH ++I+ G    L + + L  MYA  GC++ A+ VF  
Sbjct: 140 VTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYG 199

Query: 117 -----NISF------------------------RDEVSYNILIVGYSQTSDCSESLSLFS 147
                 + +                        +D VS+  +I G +Q     E++  F 
Sbjct: 200 LDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFR 259

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           EM++ G+K D   F   + AC  L AI +GK+IH   IR +   H++V ++++D Y +  
Sbjct: 260 EMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCK 319

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
            +  A  +FD +  K+  SW  +++GYG  G  + A+ +F  M+  G+  D  +    ++
Sbjct: 320 CLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAIS 379

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC----MVDLLGRAGLMEDAVKLIKNLPVE 323
           AC++   +E+G ++       ++    +HY      +V L G+ G ++D+ +L   + V 
Sbjct: 380 ACANVSSLEEGSQF----HGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR 435

Query: 324 PDANIWGALLGACRIYG 340
            DA  W A++ A   +G
Sbjct: 436 -DAVSWTAMVSAYAQFG 451



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 123/234 (52%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  + +KN+VSW AMV  + Q     +A+++  +M      P+  T
Sbjct: 314 MYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYT 373

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L   + ACA    L  G + H + I  GL   + ++N+L  +Y KCG ++ +  +FN ++
Sbjct: 374 LGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMN 433

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  ++  Y+Q     E++ LF +M   G+K D V+  G ISAC+    +++G+ 
Sbjct: 434 VRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQR 493

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KDSASWNTLI 231
              +   ++ +   +   + ++D ++RSGR++ A +  + +P   D+  W TL+
Sbjct: 494 YFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLL 547



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 170/419 (40%), Gaps = 85/419 (20%)

Query: 45  LVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104
           ++R +P    +P +    N++ A A    L        R+  +    +LF  N L   Y+
Sbjct: 32  IIRALP----YPETFLYNNIVHAYA----LMKSSTYARRVFDRIPQPNLFSWNNLLLAYS 83

Query: 105 KCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFM 162
           K G ++  ++ F  +  RD V++N+LI GYS +     ++  ++ M R        V+ M
Sbjct: 84  KAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLM 143

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF------ 216
             +   ++   +  GK+IHG  I+    ++L V + +L  Y   G I  A K+F      
Sbjct: 144 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDR 203

Query: 217 -------------------DCLPV-----KDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
                              D L +     KDS SW  +I G    G    AI  F  M+ 
Sbjct: 204 NTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKV 263

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKK---------YFDEMQADSV------KPTEMHY 297
            G+  D   + ++L AC   G + +GK+         + D +   S       K   +HY
Sbjct: 264 QGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHY 323

Query: 298 A----------------CMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRI 338
           A                 MV   G+ G  E+AVK+  ++    ++PD    G  + AC  
Sbjct: 324 AKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACAN 383

Query: 339 YGNVELGAWAAEHLFMLKPQHCG--YYILLSN----MYAEAGKWDEASKVRELMKSREA 391
             ++E G+      F  K    G  +Y+ +SN    +Y + G  D+++++   M  R+A
Sbjct: 384 VSSLEEGS-----QFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDA 437



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 165 ISACANLAAIKQG---KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           I  C  L A  Q    K IHG  IR   +   F+ N+I+  Y        A ++FD +P 
Sbjct: 10  IKQCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQ 69

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
            +  SWN L+L Y   G +    + FE + +     D V++  ++   S  GLV    K 
Sbjct: 70  PNLFSWNNLLLAYSKAGLISEMESTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKA 125

Query: 282 FDEMQAD 288
           ++ M  D
Sbjct: 126 YNTMMRD 132


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  313 bits (802), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 162/425 (38%), Positives = 256/425 (60%), Gaps = 11/425 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP---- 56
           MY+K     +A  LF  I+ +NIVSW +M+  + QN    +AL L +E  +         
Sbjct: 196 MYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDG 255

Query: 57  ----NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
               + + + +VL AC+R       + +H  +I++G   DL + N L D YAKCG L ++
Sbjct: 256 EVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVS 315

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACAN 170
           + VF+ ++ RD +S+N +I  Y+Q    +ES+ +F  M   G + ++ V+    + ACA+
Sbjct: 316 RRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAH 375

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
             + + GK IH   I+  L +++FV  SI+D Y + G++++A K FD +  K+  SW+ +
Sbjct: 376 SGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAM 435

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-S 289
           + GYGM G    A+ +F  M   GV  + ++++++L ACSH GL+E+G  +F  M  +  
Sbjct: 436 VAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFD 495

Query: 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAA 349
           V+P   HY CMVDLLGRAG +++A  LIK + + PD  +WGALLGACR++ NV+LG  +A
Sbjct: 496 VEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISA 555

Query: 350 EHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
             LF L P++CGYY+LLSN+YA+AG+W++  ++R LMK+    K PG S V  +  V  F
Sbjct: 556 RKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVF 615

Query: 410 VVNDR 414
           +V DR
Sbjct: 616 LVGDR 620



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 175/341 (51%), Gaps = 12/341 (3%)

Query: 14  LFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGH 72
           LF+   +K N+ SWN+++A  A++   ++AL+    M   +  PN  T    + +C+   
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
            L  G++ H + +  G   DLF+++AL DMY+KCG L  A+ +F+ IS R+ VS+  +I 
Sbjct: 167 DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 226

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKH--------DVVSFMGAISACANLAAIKQGKEIHGV 183
           GY Q  D   +L LF E  +             D ++ +  +SAC+ ++     + +HG 
Sbjct: 227 GYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGF 286

Query: 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
            I++     L V N+++D Y + G + ++ ++FD +  +D  SWN++I  Y   G    +
Sbjct: 287 LIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTES 346

Query: 244 INLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
           + +F  M +DG + Y+ V+  A+L AC+H G    GK   D++    ++        ++D
Sbjct: 347 MEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIID 406

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           +  + G +E A K    +  E +   W A++    ++G+ +
Sbjct: 407 MYCKCGKVEMARKAFDRMR-EKNVKSWSAMVAGYGMHGHAK 446



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 145/318 (45%), Gaps = 56/318 (17%)

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           S+N +I   +++ D  E+L  FS MR L +K +  +F  AI +C+ L  +  G++ H   
Sbjct: 119 SWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQA 178

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
           +       LFV+++++D Y++ G +  A  +FD +  ++  SW ++I GY    +   A+
Sbjct: 179 LIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRAL 238

Query: 245 NLFEA--MREDG------VGYDPVSYIAILTACS-----------HGGLVEKG------- 278
            LF+   + E G      V  DP++ +++L+ACS           HG L+++G       
Sbjct: 239 LLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGV 298

Query: 279 -----------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGL----MEDAVKLI 317
                            ++ FD M    V    + +  ++ +  + G+    ME   +++
Sbjct: 299 ENTLMDAYAKCGELGVSRRVFDGMAERDV----ISWNSIIAVYAQNGMSTESMEIFHRMV 354

Query: 318 KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH---CGYYILLSNMYAEAG 374
           K+  +  +A    A+L AC   G+  LG    + +  +  +     G  I+  +MY + G
Sbjct: 355 KDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSII--DMYCKCG 412

Query: 375 KWDEASKVRELMKSREAK 392
           K + A K  + M+ +  K
Sbjct: 413 KVEMARKAFDRMREKNVK 430


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 159/416 (38%), Positives = 256/416 (61%), Gaps = 5/416 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSV 59
           MY KS    +AS LF  + E+N +S+  ++  +A++   L+A++L   + +H E  PN  
Sbjct: 82  MYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELF--VRLHREVLPNQF 139

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           T  +VL ACA    L  G +IH  +I+ GL+ D+F++NAL D+YAKCG +  +  +F  S
Sbjct: 140 TFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAES 199

Query: 120 -FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R++V++N +IVG+ Q  D  ++L LF  M    ++   V++  A+ ACA+LAA++ G 
Sbjct: 200 PHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGL 259

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH +T++      + V N+++D Y + G I  A  +FD +  +D  SWN +I GY M G
Sbjct: 260 QIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHG 319

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               A+ +F+ M+E  V  D ++++ +L+AC++ GL+++G+ YF  M Q   ++P   HY
Sbjct: 320 LGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHY 379

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMV LLGR G ++ AVKLI  +P +P   +W ALLGAC I+ ++ELG  +A+ +  ++P
Sbjct: 380 TCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEP 439

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           Q    ++LLSNMYA A +WD  + VR+ MK +  KK PG SW++++  V  F V D
Sbjct: 440 QDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGD 495



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 165/322 (51%), Gaps = 7/322 (2%)

Query: 23  IVSWNAMVANFAQNRLELKALQLVREMPIH---NEFPNSVTLTNVLPACARGHFLRPGKE 79
           +V  N  +  F++    +++ +L +E   H   +EF NS    N L  C +      GK 
Sbjct: 1   MVCRNNFLIQFSRRGFSVQSAKLTQEFVGHVSPSEF-NSHAYANALQDCIQKDEPSRGKG 59

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSD 138
           +H  I+++G   DLF  N L +MY K   L  A  +F+ +  R+ +S+  LI GY+++  
Sbjct: 60  LHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVR 119

Query: 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
             E++ LF  +    + +   +F   + ACA +  +  G +IH   I+  LH+ +FV+N+
Sbjct: 120 FLEAIELFVRLHREVLPNQ-FTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNA 178

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
           ++D Y + GR++ + ++F   P ++  +WNT+I+G+  LG+ + A+ LF  M E  V   
Sbjct: 179 LMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQAT 238

Query: 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
            V+Y + L AC+    +E G +        +     +    ++D+  + G ++DA +L+ 
Sbjct: 239 EVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDA-RLVF 297

Query: 319 NLPVEPDANIWGALLGACRIYG 340
           +L  + D   W A++    ++G
Sbjct: 298 DLMNKQDEVSWNAMISGYSMHG 319



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 7/186 (3%)

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           ++  A+  C       +GK +H   +++     LF  N +L+ Y +S  +  A+K+FD +
Sbjct: 40  AYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEM 99

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
           P +++ S+ TLI GY        AI LF  +  + V  +  ++ ++L AC+    +  G 
Sbjct: 100 PERNTISFVTLIQGYAESVRFLEAIELFVRLHRE-VLPNQFTFASVLQACATMEGLNLGN 158

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
           +    +    +         ++D+  + G ME++++L    P   D   W  +     I 
Sbjct: 159 QIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVT-WNTV-----IV 212

Query: 340 GNVELG 345
           G+V+LG
Sbjct: 213 GHVQLG 218


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 151/416 (36%), Positives = 253/416 (60%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK    ++A  +F  + EKN+V+W  ++A +AQ      AL+L+ +M      PN +T
Sbjct: 241 MYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKIT 300

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            T++L  C     L  GK++H  II+ G   ++++ NAL  MY KCG L  A+ +F ++ 
Sbjct: 301 YTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLP 360

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++  ++ GY+Q     E++ LF  M+  G+K D ++F  A+++C++ A +++GK 
Sbjct: 361 HRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKS 420

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +       +++ ++++  Y + G +D A  +F+ +  ++  +W  +I G    G 
Sbjct: 421 IHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGR 480

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+  FE M++ G+  D V++ ++L+AC+H GLVE+G+K+F  M  D  +KP   HY+
Sbjct: 481 CREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYS 540

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C VDLLGRAG +E+A  +I  +P +P  ++WGALL ACRI+ +VE G  AAE++  L P 
Sbjct: 541 CFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPD 600

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G Y+ LSN+YA AG++++A KVR++M+ R+  K PG SW++   +V  F V D+
Sbjct: 601 DDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDK 656



 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 182/359 (50%), Gaps = 5/359 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  I ++NIVSW AM+  F      L+A +    M +    P+ VT
Sbjct: 140 MYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVT 199

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L A      L+ G+++H  I + GL  +  +  +L  MYAKCG ++ AQ +F+ + 
Sbjct: 200 FVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLP 259

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ V++ +LI GY+Q      +L L  +M+   +  + +++   +  C    A++ GK+
Sbjct: 260 EKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKK 319

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+      ++V N+++  Y + G +  A K+F  LP +D  +W  ++ GY  LG 
Sbjct: 320 VHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGF 379

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D AI+LF  M++ G+  D +++ + LT+CS    +++GK    ++            + 
Sbjct: 380 HDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSA 439

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           +V +  + G M+DA +L+ N   E +   W A++  C  +G       A E+   +K Q
Sbjct: 440 LVSMYAKCGSMDDA-RLVFNQMSERNVVAWTAMITGCAQHGRCR---EALEYFEQMKKQ 494



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 154/312 (49%), Gaps = 8/312 (2%)

Query: 35  QNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF 94
           Q RL+ +AL ++  M +      S     +L  CAR   L  G+E+HA I++ G+  + +
Sbjct: 74  QGRLK-EALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 132

Query: 95  LTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
           L N L  MYAKCG L  A+ VF+ I  R+ VS+  +I  +   +   E+   +  M+L G
Sbjct: 133 LENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAG 192

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
            K D V+F+  ++A  N   ++ G+++H    +  L     V  S++  Y + G I  A 
Sbjct: 193 CKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQ 252

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
            IFD LP K+  +W  LI GY   G+VD A+ L E M++  V  + ++Y +IL  C+   
Sbjct: 253 VIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPL 312

Query: 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            +E GKK    +              ++ +  + G +++A KL  +LP   D   W A+ 
Sbjct: 313 ALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLP-HRDVVTWTAM- 370

Query: 334 GACRIYGNVELG 345
               + G  +LG
Sbjct: 371 ----VTGYAQLG 378


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 166/428 (38%), Positives = 260/428 (60%), Gaps = 14/428 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE------ 54
           MY+K     +A  LF  I E+N+VSW +M++ + QN    +A+ L +E  + +E      
Sbjct: 130 MYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEI 189

Query: 55  -----FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL 109
                  +SV L  V+ ACAR       + +H   ++KG    L + N L D YAKCG +
Sbjct: 190 VGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEI 249

Query: 110 NLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISA 167
           ++++ VF+ +   D  S+N LI  Y+Q     E+ SLFS+M   G ++++ V+    + A
Sbjct: 250 SVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLA 309

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           CA+  A++ GK IH   ++  L  +L V  SI+D Y + GR+++A K FD L  K+  SW
Sbjct: 310 CAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSW 369

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
             ++ GYGM G    A+ +F  M   G+  + ++++++L ACSH GL+++G  +F++M+ 
Sbjct: 370 TVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKC 429

Query: 288 D-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGA 346
           +  V+P   HY+CMVDLLGRAG +++A  LI+ + V+PD  +WG+LLGACRI+ NVELG 
Sbjct: 430 EFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGE 489

Query: 347 WAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEV 406
            +A  LF L P +CGYY+LLSN+YA+AG+WD+  ++R LMK+    K PG S V+ +  V
Sbjct: 490 ISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRV 549

Query: 407 QDFVVNDR 414
             F+V D+
Sbjct: 550 HVFLVGDK 557



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 171/337 (50%), Gaps = 14/337 (4%)

Query: 18  IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPG 77
           + + ++ SWN+++A+FA++   L+AL     M   +  PN  T    + +C+  + L  G
Sbjct: 46  VDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAG 105

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           K+IH +    G   D+F+ +AL DMY+KCG LN A+ +F+ I  R+ VS+  +I GY Q 
Sbjct: 106 KQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQN 165

Query: 137 SDCSESLSLFSEMRLLG-----------MKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
               E++ LF E  L+            +  D V     ISACA +      + +HG+ +
Sbjct: 166 ERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAV 225

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
           +K     L V N+++D Y + G I ++ K+FD +   D  SWN+LI  Y   G    A +
Sbjct: 226 KKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFS 285

Query: 246 LFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLL 304
           LF  M + G V Y+ V+  A+L AC+H G ++ GK   D++    ++   +    +VD+ 
Sbjct: 286 LFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMY 345

Query: 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
            + G +E A K    L    +   W  ++    ++G+
Sbjct: 346 CKCGRVEMARKAFDRLK-RKNVKSWTVMVAGYGMHGH 381



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 140/321 (43%), Gaps = 59/321 (18%)

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           S+N +I  ++++ D  ++L  FS MR L +  +  +F   I +C++L  +  GK+IH   
Sbjct: 53  SWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQA 112

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
                 + +FVA++++D Y++ G ++ A K+FD +P ++  SW ++I GY        A+
Sbjct: 113 FVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAV 172

Query: 245 NLF-EAMREDGVGYDPVSY---------------------IAILTACSHGGLVEKG---- 278
            LF E +  D   YD +                       +  +T C HG  V+KG    
Sbjct: 173 FLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGC 232

Query: 279 --------------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL-- 316
                               +K FD M+   V      +  ++ +  + GL  +A  L  
Sbjct: 233 LAVGNTLMDAYAKCGEISVSRKVFDGMEETDV----CSWNSLIAVYAQNGLSVEAFSLFS 288

Query: 317 --IKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH---CGYYILLSNMYA 371
             +K   V  +A    A+L AC   G +++G    + +  ++ +     G  I+  +MY 
Sbjct: 289 DMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIV--DMYC 346

Query: 372 EAGKWDEASKVRELMKSREAK 392
           + G+ + A K  + +K +  K
Sbjct: 347 KCGRVEMARKAFDRLKRKNVK 367


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/430 (39%), Positives = 256/430 (59%), Gaps = 18/430 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEK----NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           Y++  R  +A  LF  I E+    N+V+W+A++A +AQ  L  +AL + R+M +    PN
Sbjct: 307 YSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPN 366

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD-------LFLTNALTDMYAKCGCLN 110
            VTL ++L  CA    L  GKE H   I+  LN D       L + NAL DMY+KC    
Sbjct: 367 VVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPK 426

Query: 111 LAQNVFNI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAI 165
            A+ +F++     R  V++ +LI G +Q  + +E+L LFS+M      +  +  +   A+
Sbjct: 427 AARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCAL 486

Query: 166 SACANLAAIKQGKEIHGVTIRKHLHT-HLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
            ACA L A++ G++IH   +R    +  LFVAN ++D Y++SG +D A  +FD +  ++ 
Sbjct: 487 MACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNG 546

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            SW +L+ GYGM G  + A+ +F  M++ G+  D V+++ +L ACSH G+V++G  YF+ 
Sbjct: 547 VSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNG 606

Query: 285 MQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           M  D  V P   HYACMVDLL RAG +++A++LI+ +P++P   +W ALL ACR+Y NVE
Sbjct: 607 MNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVE 666

Query: 344 LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTR 403
           LG +AA  L  L+  + G Y LLSN+YA A  W + +++R LMK+   KK PGCSWVQ R
Sbjct: 667 LGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGR 726

Query: 404 DEVQDFVVND 413
                F   D
Sbjct: 727 KGTATFFAGD 736



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 163/334 (48%), Gaps = 14/334 (4%)

Query: 1   MYAKSSRPAEASYLFHNI--AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY   + PA+A  +   +  +   +  WN ++            LQL R M      P+ 
Sbjct: 67  MYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDH 126

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T   VL AC      R G  +HA +   G  +++F+ N L  MY +CG    A+ VF+ 
Sbjct: 127 YTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDE 186

Query: 118 ---ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAA 173
                  D VS+N ++  Y Q  D   ++ +F  M   LG++ D VS +  + ACA++ A
Sbjct: 187 MRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGA 246

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
             +GK++HG  +R  L   +FV N+++D Y + G ++ ANK+F+ + VKD  SWN ++ G
Sbjct: 247 WSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTG 306

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
           Y  +G  D A+ LFE +RE+ +  + V++ A++   +  GL  +    F +M+    +P 
Sbjct: 307 YSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPN 366

Query: 294 EMHYACMVDLLGRAGLME-------DAVKLIKNL 320
            +    ++     AG +         A+K I NL
Sbjct: 367 VVTLVSLLSGCALAGTLLHGKETHCHAIKWILNL 400



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 103/265 (38%), Gaps = 62/265 (23%)

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           +N LI          + L L+  M+ LG + D  +F   + AC  + + + G  +H V  
Sbjct: 94  WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 153

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
                 ++FV N ++  Y R G                  +W             + A  
Sbjct: 154 ASGFEWNVFVGNGLVSMYGRCG------------------AW-------------ENARQ 182

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           +F+ MRE GVG D VS+ +I+ A   GG   +  K F+ M  D                 
Sbjct: 183 VFDEMRERGVG-DLVSWNSIVAAYMQGGDSIRAMKMFERMTED----------------- 224

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365
             G+  DAV L+  LP       W       +++G   L +   E +F+           
Sbjct: 225 -LGIRPDAVSLVNVLPACASVGAWSR---GKQVHG-YALRSGLFEDVFVGNA-------- 271

Query: 366 LSNMYAEAGKWDEASKVRELMKSRE 390
           + +MYA+ G  +EA+KV E MK ++
Sbjct: 272 VVDMYAKCGMMEEANKVFERMKVKD 296



 Score = 45.8 bits (107), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 11/91 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+KS     A  +F N+ ++N VSW +++  +  +    +ALQ+  EM      P+ VT
Sbjct: 524 MYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVT 583

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF 91
              VL AC+           H+ ++ +G+N+
Sbjct: 584 FVVVLYACS-----------HSGMVDQGINY 603


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 157/414 (37%), Positives = 253/414 (61%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     EA  +F  +  K++VSW +++A +AQN +  +A+ L+  M      PN  T
Sbjct: 95  LYCKCGSVVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFT 154

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L A         G +IHA  ++   + D+++ +AL DMYA+CG +++A  VF+ + 
Sbjct: 155 FASLLKAVGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLD 214

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N LI G+++  D   +L +F+EM+  G +    ++    SA A + A++QGK 
Sbjct: 215 SKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKW 274

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+       FV N++LD Y +SG +  A K+F+ +  KD  +WN+++  +   G 
Sbjct: 275 VHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGL 334

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A++ FE MR+ G+  + +S++ ILTACSHGGLV++GK YFD ++  +++P   HY  
Sbjct: 335 GKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVT 394

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLLGRAGL+  A+  I  +P+EP A +WGALL ACR++ N ++G +AA+H+F L P  
Sbjct: 395 VVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDD 454

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G  +LL N+YA  G WD A++VR++MK+   KK P CSWV+  + V  FV ND
Sbjct: 455 SGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVAND 508



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 146/298 (48%), Gaps = 5/298 (1%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P        + ACA+   L   ++IHA +       D FL N+L  +Y KCG +  A  V
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKV 108

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ +  +D VS+  LI GY+Q    +E++ L   M     K +  +F   + A    A  
Sbjct: 109 FDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADS 168

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G +IH + ++   H  ++V +++LD Y R G++D+A  +FD L  K+  SWN LI G+
Sbjct: 169 GIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G+ +TA+ +F  M+ +G      +Y +I +A +  G +E+GK     M     K T 
Sbjct: 229 ARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTA 288

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
                M+D+  ++G M DA K+ + + +  D   W ++L A   YG   LG  A  H 
Sbjct: 289 FVGNTMLDMYAKSGSMIDARKVFERV-LNKDLVTWNSMLTAFAQYG---LGKEAVSHF 342



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 21/237 (8%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           I+ACA    +   ++IH            F+ NS++  Y + G +  A+K+FD +  KD 
Sbjct: 58  ITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKDM 117

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            SW +LI GY        AI L   M +     +  ++ ++L A   G   + G     +
Sbjct: 118 VSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAV--GAYADSG--IGGQ 173

Query: 285 MQADSVKPTEMHY-----ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
           + A +VK  + H      + ++D+  R G M+ A  +   L  +   + W AL+      
Sbjct: 174 IHALAVK-CDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVS-WNALISGFARK 231

Query: 340 GNVE--LGAWAAEHLFMLKPQHCGYYILLSNMYA----EAGKWDEASKVRELMKSRE 390
           G+ E  L  +A       +  H  Y  + S +      E GKW  A     ++KSR+
Sbjct: 232 GDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHA----HMIKSRQ 284


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 153/416 (36%), Positives = 255/416 (61%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K         +F  +  K++VS+N ++A +AQ+ +   AL++VREM   +  P++ T
Sbjct: 149 MYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFT 208

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L++VLP  +    +  GKEIH  +IRKG++ D+++ ++L DMYAK   +  ++ VF+  +
Sbjct: 209 LSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLY 268

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           R D +S+N L+ GY Q    +E+L LF +M    ++   V+F   I ACA+LA +  GK+
Sbjct: 269 RRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQ 328

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  +R     ++F+A++++D Y++ G I  A KIFD + + D  SW  +I+G+ + G 
Sbjct: 329 LHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGH 388

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HYA 298
              A++LFE M+  GV  + V+++A+LTACSH GLV++   YF+ M        E+ HYA
Sbjct: 389 GHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYA 448

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            + DLLGRAG +E+A   I  + VEP  ++W  LL +C ++ N+EL    AE +F +  +
Sbjct: 449 AVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSE 508

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G Y+L+ NMYA  G+W E +K+R  ++ +  +K P CSW++ +++   FV  DR
Sbjct: 509 NMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDR 564



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 170/333 (51%), Gaps = 2/333 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EA  +F  +    +++W +++  F    L  +AL    EM      P+     +VL +C 
Sbjct: 57  EALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCT 116

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNI 128
               LR G+ +H  I+R G++ DL+  NAL +MY+K   ++  + VF +  R D VSYN 
Sbjct: 117 MMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNT 176

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +I GY+Q+    ++L +  EM    +K D  +    +   +    + +GKEIHG  IRK 
Sbjct: 177 VIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKG 236

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           + + +++ +S++D Y +S RI+ + ++F  L  +DS SWN+L+ GY   G  + A+ LF 
Sbjct: 237 IDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFR 296

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            M    V    V++ +++ AC+H   +  GK+    +            + +VD+  + G
Sbjct: 297 QMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCG 356

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
            ++ A K+   + +  + + W A++    ++G+
Sbjct: 357 NIQAARKIFDRMNLHDEVS-WTAIIMGHALHGH 388



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 122/262 (46%), Gaps = 7/262 (2%)

Query: 77  GKEIHARIIRKGLNFDLFLTNA--LTDMYAKCGCLNLAQNVFNISFRDEV-SYNILIVGY 133
            K++HA+ IR      L  T+A  +  +Y     L+ A  VF       V ++  +I  +
Sbjct: 24  AKQLHAQFIRTQ---SLSHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCF 80

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           +  S  S +L+ F EMR  G   D   F   + +C  +  ++ G+ +HG  +R  +   L
Sbjct: 81  TDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDL 140

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
           +  N++++ Y++   ID   K+F+ +P KD  S+NT+I GY   G  + A+ +   M   
Sbjct: 141 YTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTS 200

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
            +  D  +  ++L   S    V KGK+    +    +       + +VD+  ++  +ED+
Sbjct: 201 DLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDS 260

Query: 314 VKLIKNLPVEPDANIWGALLGA 335
            ++  +L    D+  W +L+  
Sbjct: 261 ERVFSHL-YRRDSISWNSLVAG 281


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/418 (39%), Positives = 250/418 (59%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAE-ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MYA S    + A  +F++I  K  VSW  ++A F         L   R+M + +  PNS 
Sbjct: 153 MYAASCATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSF 212

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           + +    ACA       GK+IHA + + GL+ D  + N++ DMY +C  L  A+  F  +
Sbjct: 213 SFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGEL 272

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + ++ +++N LI GY + SD SESLSLF +M   G K +  +F    +ACANLA +  G+
Sbjct: 273 TEKNLITWNTLIAGY-ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQ 331

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++HG  +R+    ++ + NS++D Y + G I  ++K+F  +P +D  SW T+++GYG  G
Sbjct: 332 QVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHG 391

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A+ LF+ M + G+  D + ++ +L  CSH GLV+KG KYF  M  D ++ P +  Y
Sbjct: 392 YGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIY 451

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C+VDLLGRAG +E+A +L++N+P EPD ++WGALLGAC+ Y    LG  AA+ +   +P
Sbjct: 452 RCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRP 511

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
              G Y+LLS +YA  GKW E +K+R+LMK    KK  G SW++ R+EV  FVV  +M
Sbjct: 512 NMAGTYLLLSKIYAAEGKWGEFAKMRKLMKGMNKKKEVGKSWIEIRNEVYSFVVGAKM 569



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 160/325 (49%), Gaps = 25/325 (7%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EA  LF+ I E+++V+W AM+  F       +A  +  EM      PN+ T+++VL AC 
Sbjct: 61  EACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACK 120

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMY-AKCGCLNLAQNVFN-ISFRDEVSYN 127
               L  G   H+   + G++  +++ NAL DMY A C  ++ A +VFN I  +  VS+ 
Sbjct: 121 GMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWT 180

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            LI G++   D    L  F +M L  +  +  SF  A  ACA++++   GK+IH    + 
Sbjct: 181 TLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKY 240

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            LH    V NSILD Y R   +  A + F  L  K+  +WNTLI GY    +   +++LF
Sbjct: 241 GLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYER-SDSSESLSLF 299

Query: 248 EAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQADSVKPTEMH 296
             M  +G   +  ++ +I  AC+           HGG+V +G   FD+  A         
Sbjct: 300 FQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRG---FDKNVA--------L 348

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLP 321
              ++D+  + G + D+ KL  ++P
Sbjct: 349 INSLIDMYAKCGSISDSHKLFCDMP 373


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 158/415 (38%), Positives = 254/415 (61%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAKS    +A  LF  + + +++ W+ M+A +AQ+    +AL L   M   +  PN+ T
Sbjct: 281 LYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFT 340

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL ACA    L  GK+IH+ +++ GLN ++F++NA+ D+YAKCG +  +  +F  + 
Sbjct: 341 FASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELP 400

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R++V++N +IVGY Q  D   +++LF+ M    M+   V++   + A A+LAA++ G +
Sbjct: 401 DRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQ 460

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH +TI+   +    VANS++D Y + GRI+ A   FD +  +D  SWN +I GY M G 
Sbjct: 461 IHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGM 520

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+NLF+ M+      + ++++ +L+ACS+ GL+ KG+ +F+ M  D  +KP   HY 
Sbjct: 521 SMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYT 580

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMV LLGR G  ++A+KLI  +  +P   +W ALLGAC I+  V+LG   A+H+  ++P 
Sbjct: 581 CMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPH 640

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               ++LLSNMYA AG+WD  + VR+ M+ ++ +K PG SWV+ +  V  F V D
Sbjct: 641 DDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGD 695



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 169/345 (48%), Gaps = 7/345 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +S+   +AS LF  + + N +S+  +   ++++    +AL  +  +       N    
Sbjct: 80  YVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVF 139

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T +L              +HA + + G + D F+  AL D Y+  G +++A++VF+ I  
Sbjct: 140 TTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICC 199

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D VS+  ++  Y++     ESL LF++MR++G K +  +  GA+ +C  L A   GK +
Sbjct: 200 KDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSV 259

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  ++      LFV  ++L+ Y +SG I  A ++F+ +P  D   W+ +I  Y      
Sbjct: 260 HGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRS 319

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A++LF  MR+  V  +  ++ ++L AC+    ++ GK+    +    +         +
Sbjct: 320 KEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAI 379

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
           +D+  + G +E+++KL + LP   D   W  +     I G V+LG
Sbjct: 380 MDVYAKCGEIENSMKLFEELPDRNDVT-WNTI-----IVGYVQLG 418



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 129/312 (41%), Gaps = 51/312 (16%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           GK +H  I+++G + DLF  N L + Y +   L  A  +F+ +   + +S+  L  GYS+
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 136 TSDCSESLSLFSEMRLLGMKHDV--VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
                ++L     +R+    H+V    F   +    ++        +H    +   H   
Sbjct: 114 DHQFHQALHFI--LRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADA 171

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
           FV  +++D Y+  G +D+A  +FD +  KD  SW  ++  Y      + ++ LF  MR  
Sbjct: 172 FVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRI- 230

Query: 254 GVGYDPVSY-------------------------------------IAILTACSHGGLVE 276
            +GY P ++                                     IA+L   +  G + 
Sbjct: 231 -MGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEII 289

Query: 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IKNLPVEPDANIWGALL 333
             ++ F+EM    + P    ++ M+    ++   ++A+ L   ++   V P+   + ++L
Sbjct: 290 DAQRLFEEMPKTDLIP----WSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVL 345

Query: 334 GACRIYGNVELG 345
            AC    +++LG
Sbjct: 346 QACASSVSLDLG 357


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 158/416 (37%), Positives = 243/416 (58%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F  +  ++ VSWNA++A   QN   +K L L   M      P+  T
Sbjct: 384 MYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFT 443

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +V+ ACA    L  G EIH RII+ G+  D F+ +AL DMY KCG L  A+ +   + 
Sbjct: 444 YGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLE 503

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N +I G+S       +   FS+M  +G+  D  ++   +  CAN+A I+ GK+
Sbjct: 504 EKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQ 563

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   ++  LH+ +++A++++D Y++ G +  +  +F+  P +D  +W+ +I  Y   G 
Sbjct: 564 IHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGL 623

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + AINLFE M+   V  +   +I++L AC+H G V+KG  YF +M +   + P   HY+
Sbjct: 624 GEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYS 683

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGR+G + +A+KLI+++P E D  IW  LL  C++ GNVE+   A   L  L PQ
Sbjct: 684 CMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQ 743

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y+LL+N+YA  G W E +K+R +MK+ + KK PGCSW++ RDEV  F+V D+
Sbjct: 744 DSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDK 799



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 199/428 (46%), Gaps = 40/428 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  +  +A  +F  + E+N+V W+A++A + QN   ++ L+L ++M       +  T
Sbjct: 182 MYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQST 241

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +V  +CA     + G ++H   ++    +D  +  A  DMYAKC  +  A  VFN + 
Sbjct: 242 YASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLP 301

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
                SYN +IVGY++     ++L +F  ++   +  D +S  GA++AC+ +    +G +
Sbjct: 302 NPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQ 361

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+ ++  L  ++ VAN+ILD Y + G +  A  IF+ +  +D+ SWN +I  +    E
Sbjct: 362 LHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEE 421

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +   ++LF +M    +  D  +Y +++ AC+    +  G +    +    +       + 
Sbjct: 422 IVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSA 481

Query: 300 MVDLLGRAGLMEDAVKL----------------------------------IKNLPVEPD 325
           +VD+ G+ G++ +A K+                                  +  + + PD
Sbjct: 482 LVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPD 541

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ-HCGYYI--LLSNMYAEAGKWDEASKV 382
              +  +L  C     +ELG     H  +LK Q H   YI   L +MY++ G   ++  +
Sbjct: 542 NYTYATVLDVCANMATIELGKQI--HAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLM 599

Query: 383 RELMKSRE 390
            E    R+
Sbjct: 600 FEKAPKRD 607



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 174/349 (49%), Gaps = 30/349 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL---VREMPIHNEFPNS 58
           YA       A  LF ++ E+++VSWN++++ +  N +  K++++   +R + I +++   
Sbjct: 82  YAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDY--- 138

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
            T   +L AC+       G ++H   I+ G   D+   +AL DMY+KC  L+ A  VF  
Sbjct: 139 ATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFRE 198

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  R+ V ++ +I GY Q     E L LF +M  +GM     ++     +CA L+A K G
Sbjct: 199 MPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLG 258

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            ++HG  ++        +  + LD Y +  R+  A K+F+ LP     S+N +I+GY   
Sbjct: 259 TQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQ 318

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQ 286
            +   A+++F++++ + +G+D +S    LTACS           HG  V+ G   F+   
Sbjct: 319 DQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLG-FNICV 377

Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           A+++          +D+ G+ G + +A  + + +    DA  W A++ A
Sbjct: 378 ANTI----------LDMYGKCGALMEACLIFEEME-RRDAVSWNAIIAA 415



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 133/311 (42%), Gaps = 32/311 (10%)

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           +T +++L  C+    L PGK++H ++I  G    +++ N L   Y K   +N A  VF+ 
Sbjct: 7   LTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDR 66

Query: 118 ISFRDEVSYNILIVGYSQTSDCS-------------------------------ESLSLF 146
           +  RD +S+N LI GY+   +                                 +S+ +F
Sbjct: 67  MPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
             MR L + HD  +F   + AC+ +     G ++H + I+      +   ++++D Y++ 
Sbjct: 127 VRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
            ++D A ++F  +P ++   W+ +I GY         + LF+ M + G+G    +Y ++ 
Sbjct: 187 KKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
            +C+     + G +              +     +D+  +   M DA K+   LP  P  
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQ 306

Query: 327 NIWGALLGACR 337
           +    ++G  R
Sbjct: 307 SYNAIIVGYAR 317


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/418 (39%), Positives = 250/418 (59%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAE-ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MYA S    + A  +F++I  K  VSW  ++A F         L   R+M + +  PNS 
Sbjct: 153 MYAASCATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSF 212

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           + +    ACA       GK+IHA + + GL+ D  + N++ DMY +C  L  A+  F  +
Sbjct: 213 SFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGEL 272

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + ++ +++N LI GY + SD SESLSLF +M   G K +  +F    +ACANLA +  G+
Sbjct: 273 TEKNLITWNTLIAGY-ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQ 331

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++HG  +R+    ++ + NS++D Y + G I  ++K+F  +P +D  SW T+++GYG  G
Sbjct: 332 QVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHG 391

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A+ LF+ M + G+  D + ++ +L  CSH GLV+KG KYF  M  D ++ P +  Y
Sbjct: 392 YGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIY 451

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C+VDLLGRAG +E+A +L++N+P EPD ++WGALLGAC+ Y    LG  AA+ +   +P
Sbjct: 452 RCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRP 511

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
              G Y+LLS +YA  GKW E +K+R+LMK    KK  G SW++ R+EV  FVV  +M
Sbjct: 512 NMAGTYLLLSKIYAAEGKWGEFAKMRKLMKGMNKKKEVGKSWIEIRNEVYSFVVGAKM 569



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 160/325 (49%), Gaps = 25/325 (7%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EA  LF+ I E+++V+W AM+  F       +A  +  EM      PN+ T+++VL AC 
Sbjct: 61  EACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACK 120

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMY-AKCGCLNLAQNVFN-ISFRDEVSYN 127
               L  G   H+   + G++  +++ NAL DMY A C  ++ A +VFN I  +  VS+ 
Sbjct: 121 GMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWT 180

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            LI G++   D    L  F +M L  +  +  SF  A  ACA++++   GK+IH    + 
Sbjct: 181 TLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKY 240

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            LH    V NSILD Y R   +  A + F  L  K+  +WNTLI GY    +   +++LF
Sbjct: 241 GLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYER-SDSSESLSLF 299

Query: 248 EAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQADSVKPTEMH 296
             M  +G   +  ++ +I  AC+           HGG+V +G   FD+  A         
Sbjct: 300 FQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRG---FDKNVA--------L 348

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLP 321
              ++D+  + G + D+ KL  ++P
Sbjct: 349 INSLIDMYAKCGSISDSHKLFCDMP 373


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 156/428 (36%), Positives = 259/428 (60%), Gaps = 15/428 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPNSV 59
           MY    +      +F  + ++ I  WNAM+  +AQN  + +AL L  EM        NS 
Sbjct: 343 MYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANST 402

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T+  V+PAC R       + IH  ++++GL+ D F+ NAL DMY++ G +++A+ +F  +
Sbjct: 403 TMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKM 462

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-----------GMKHDVVSFMGAISA 167
             RD V++N +I GY  +    ++L +  +M++L            +K + ++ M  + +
Sbjct: 463 EDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPS 522

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           CA L+A+ +GKEIH   I+ +L T + V ++++D Y + G + ++ K+FD +P+++  +W
Sbjct: 523 CAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITW 582

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           N +++ YGM G    AI++   M   GV  + V++I++  ACSH G+V +G K F  M+ 
Sbjct: 583 NVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKK 642

Query: 288 D-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVELG 345
           D  V+P+  HYAC+VDLLGRAG +++A +LI  +P   D A  W +LLGACRI+ N+E+G
Sbjct: 643 DYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIG 702

Query: 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDE 405
             AA++L  L+P    +Y+LL+N+Y+ AG W +A++VR  MK++  +K PGCSW++  DE
Sbjct: 703 EIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDE 762

Query: 406 VQDFVVND 413
           V  FV  D
Sbjct: 763 VHKFVAGD 770



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 185/357 (51%), Gaps = 15/357 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  + A +  L  +   +++V+WN ++++  QN   L+AL+ +REM +    P+  T
Sbjct: 241 MYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFT 300

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           +++VLPAC+    LR GKE+HA  ++ G L+ + F+ +AL DMY  C  +     VF+  
Sbjct: 301 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGM 360

Query: 120 FRDEVS-YNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQG 177
           F  ++  +N +I GY+Q     E+L LF EM    G+  +  +  G + AC    A  + 
Sbjct: 361 FDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKK 420

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + IHG  +++ L    FV N+++D Y+R G+ID+A +IF  +  +D  +WNT+I GY   
Sbjct: 421 EAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFS 480

Query: 238 GEVDTAINLFEAM---------REDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQ 286
              + A+ +   M         R   V   P  ++ + IL +C+    + KGK+      
Sbjct: 481 ERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 540

Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            +++       + +VD+  + G ++ + K+   +P+  +   W  ++ A  ++GN +
Sbjct: 541 KNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR-NVITWNVIVMAYGMHGNSQ 596



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 158/342 (46%), Gaps = 14/342 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K         +F  I+E+N VSWN+++++         AL+  R M   +  P+S T
Sbjct: 138 LYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFT 197

Query: 61  LTNVLPACARGHFLRP-----GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           L +V  AC+  +F  P     GK++HA  +RKG   + F+ N L  MY K G L  +  V
Sbjct: 198 LVSVALACS--NFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLA-SSKV 253

Query: 116 FNISF--RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
              SF  RD V++N ++    Q     E+L    EM L G++ D  +    + AC++L  
Sbjct: 254 LLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEM 313

Query: 174 IKQGKEIHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           ++ GKE+H   ++   L  + FV ++++D Y    ++    ++FD +  +    WN +I 
Sbjct: 314 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMIT 373

Query: 233 GYGMLGEVDTAINLFEAMRED-GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
           GY      + A+ LF  M E  G+  +  +   ++ AC   G   K +     +    + 
Sbjct: 374 GYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLD 433

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                   ++D+  R G ++ A ++   +  + D   W  ++
Sbjct: 434 RDRFVQNALMDMYSRLGKIDIAKRIFGKME-DRDLVTWNTII 474



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 119/260 (45%), Gaps = 6/260 (2%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           W  ++ +  ++ L  +A+    +M +    P++     +L A A    +  GK+IHA + 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 86  RKGLNFD-LFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESL 143
           + G   D + + N L ++Y KCG       VF+ IS R++VS+N LI           +L
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLA---AIKQGKEIHGVTIRKHLHTHLFVANSIL 200
             F  M    ++    + +    AC+N      +  GK++H   +RK    + F+ N+++
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLV 239

Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
             Y + G++  +  +      +D  +WNT++       +   A+     M  +GV  D  
Sbjct: 240 AMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGF 299

Query: 261 SYIAILTACSHGGLVEKGKK 280
           +  ++L ACSH  ++  GK+
Sbjct: 300 TISSVLPACSHLEMLRTGKE 319


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/441 (37%), Positives = 257/441 (58%), Gaps = 22/441 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNI----VSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           Y++S     A  LF N+ ++NI    V+W A++A ++Q     +AL + R+M      PN
Sbjct: 196 YSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPN 255

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRK----------GLNFDLFLTNALTDMYAKCG 107
            VT+ +VL ACA       G EIHA  ++           G + DL + NAL DMY+KC 
Sbjct: 256 CVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 315

Query: 108 CLNLAQNVFN---ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFM 162
               A+++F+   +  R+ V++ ++I G++Q  D +++L LF EM     G+  +  +  
Sbjct: 316 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 375

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLH--THLFVANSILDFYTRSGRIDLANKIFDCLP 220
             + ACA+LAAI+ GK+IH   +R H +  +  FVAN +++ Y++ G +D A  +FD + 
Sbjct: 376 CILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMS 435

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            K + SW +++ GYGM G    A+++F+ MR+ G   D ++++ +L ACSH G+V++G  
Sbjct: 436 QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLS 495

Query: 281 YFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
           YFD M AD  + P   HYA  +DLL R G ++ A K +K++P+EP A +W ALL ACR++
Sbjct: 496 YFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVH 555

Query: 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSW 399
            NVEL   A   L  +  ++ G Y L+SN+YA AG+W + +++R LMK    KK PGCSW
Sbjct: 556 SNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSW 615

Query: 400 VQTRDEVQDFVVNDRMKTFTP 420
           VQ +     F V DR    +P
Sbjct: 616 VQGQKGTASFFVGDRSHPLSP 636



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 191/401 (47%), Gaps = 62/401 (15%)

Query: 1   MYAKSSRPAEASYLFHNIAEK---NIVSWNAMVANFAQNRLELKALQLVREMPI------ 51
           MY++     EAS +F  I ++   +++SWN++V+   ++     AL L  +M +      
Sbjct: 54  MYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKP 113

Query: 52  HNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL 111
            NE  + +++ N+LPAC     +   KE+H   IR G   D+F+ NAL D YAKCG +  
Sbjct: 114 TNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMEN 173

Query: 112 AQNVFN-ISFRDEVSYNILIVGYSQTSD-------------------------------- 138
           A  VFN + F+D VS+N ++ GYSQ+ +                                
Sbjct: 174 AVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQ 233

Query: 139 --CS-ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT---- 191
             CS E+L++F +M   G   + V+ +  +SACA+L A  QG EIH  +++  L T    
Sbjct: 234 RGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDND 293

Query: 192 ------HLFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNTLILGYGMLGEVDTA 243
                  L V N+++D Y++      A  IFD +P+  ++  +W  +I G+   G+ + A
Sbjct: 294 FGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDA 353

Query: 244 INLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA--C 299
           + LF  M  +  G  P +Y    IL AC+H   +  GK+    +       +  ++   C
Sbjct: 354 LKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANC 413

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           ++++  + G ++ A  +  ++  +  A  W +++    ++G
Sbjct: 414 LINMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMHG 453



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 126/236 (53%), Gaps = 10/236 (4%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL +VL AC      R G   H  I   G   ++F+ NAL  MY++CG L  A  +F+ I
Sbjct: 12  TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 71

Query: 119 SFR---DEVSYNILIVGYSQTSDCSESLSLFSEMRLL------GMKHDVVSFMGAISACA 169
           + R   D +S+N ++  + ++S+   +L LFS+M L+        + D++S +  + AC 
Sbjct: 72  TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 131

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
           +L A+ Q KE+HG  IR      +FV N+++D Y + G ++ A K+F+ +  KD  SWN 
Sbjct: 132 SLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 191

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           ++ GY   G    A  LF+ MR++ +  D V++ A++   S  G   +    F +M
Sbjct: 192 MVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 247



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 10/200 (5%)

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G + D  +    + AC  L + + G   HG+       +++F+ N+++  Y+R G ++ A
Sbjct: 5   GTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 64

Query: 213 NKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAM------REDGVGYDPVSYI 263
           + IFD +    + D  SWN+++  +       TA++LF  M      +      D +S +
Sbjct: 65  SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 124

Query: 264 AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
            IL AC     V + K+       +           ++D   + GLME+AVK+  N+   
Sbjct: 125 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVF-NMMEF 183

Query: 324 PDANIWGALLGACRIYGNVE 343
            D   W A++      GN +
Sbjct: 184 KDVVSWNAMVAGYSQSGNFK 203



 Score = 38.9 bits (89), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A ++F ++++K+ +SW +M+  +  +    +AL +  +M      P+ +T
Sbjct: 417 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 476

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF 91
              VL AC+           H  ++ +GL++
Sbjct: 477 FLVVLYACS-----------HCGMVDQGLSY 496


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 156/416 (37%), Positives = 246/416 (59%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EAS LF  +  ++ VSWNA++    QN  E K L     M      P+  T
Sbjct: 403 MYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFT 462

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV-FNIS 119
             +VL ACA       G E+H RII+ G+   +F+ +AL DMY+KCG +  A+ + + + 
Sbjct: 463 YGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLE 522

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N +I G+S      +S   FS M  +G++ D  ++   +  CANLA +  GK+
Sbjct: 523 EQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQ 582

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+  L + +++ ++++D Y++ G +  +  +F   P +DS +WN +I G+   G 
Sbjct: 583 IHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGL 642

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A+ LFE M  + +  +  +++++L ACSH G  +KG  YF +M +  +++P   HY+
Sbjct: 643 GEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYS 702

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGR+G +E+A++LI+++P E DA IW  LL  C+I GNVE+   AA  L  L P+
Sbjct: 703 CMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPE 762

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y LLSN+YA+AG W + SK+R+ M+S   KK PGCSW++ +DEV  F+V D+
Sbjct: 763 DSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKEPGCSWIEVKDEVHTFLVCDK 818



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 197/438 (44%), Gaps = 47/438 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK +   ++  +F  + +KN +SW+A +A   QN   L+ L+L +EM       +  T
Sbjct: 201 MYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQST 260

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
             +V  +CA     R G ++H   ++     D+ +  A  DMYAKC  ++ A  +F++  
Sbjct: 261 YASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLP 320

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             +  SYN +I+GY++     ++  LF +++      D VS  GA+SA A +    +G +
Sbjct: 321 DHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQ 380

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+ I+ +L +++ VAN+ILD Y + G +  A+ +FD + ++D  SWN +I        
Sbjct: 381 LHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNES 440

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
               ++ F AM    +  D  +Y ++L AC+       G +    +    +       + 
Sbjct: 441 EGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSA 500

Query: 300 MVDLLGRAGLMEDAVKL----------------------------------IKNLPVEPD 325
           +VD+  + G+ME+A K+                                  +  + VEPD
Sbjct: 501 LVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPD 560

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385
              +  +L  C     V LG     H  M+K +      LLS++Y  +   D  SK   +
Sbjct: 561 NFTYATVLDTCANLATVGLGKQI--HAQMIKLE------LLSDVYITSTLVDMYSKCGNM 612

Query: 386 MKS----REAKKNPGCSW 399
             S    R+A K    +W
Sbjct: 613 HDSLLMFRKAPKRDSVTW 630



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 162/375 (43%), Gaps = 44/375 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFA-QNRLELKALQLVREMPIHNEFP--- 56
           MY K      A  +F  + +++IVSWN MV   A   R+EL A  +   MP H +     
Sbjct: 68  MYVKCCALEYAYKVFEEMPQRDIVSWNTMVFGCAGAGRMEL-AQAVFNSMPHHGDVVSWN 126

Query: 57  -----------------------------NSVTLTNVLPACARGHFLRPGKEIHARIIRK 87
                                        +  TL   L  C+       G +IH   ++ 
Sbjct: 127 SLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQM 186

Query: 88  GLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLF 146
           G ++D+   +AL DMYAKC  L  + +VF+ +  ++ +S++  I G  Q       L LF
Sbjct: 187 GFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLF 246

Query: 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
            EM+  G+     ++     +CA L+A + G ++H   ++    + + V  + LD Y + 
Sbjct: 247 KEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKC 306

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
             +  A K+F  LP  +  S+N +I+GY    +   A  LF  ++++   +D VS    L
Sbjct: 307 DNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGAL 366

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC----MVDLLGRAGLMEDAVKLIKNLPV 322
           +A +    V KG     ++   ++K       C    ++D+ G+ G + +A  L   + +
Sbjct: 367 SAAA----VIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEI 422

Query: 323 EPDANIWGALLGACR 337
             D   W A++ AC 
Sbjct: 423 R-DPVSWNAIITACE 436



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 128/295 (43%), Gaps = 33/295 (11%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC------------- 106
           T +++   C+    L+PGKE HA +I  G    +F+TN L  MY KC             
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 107 -------------GC-----LNLAQNVFNI--SFRDEVSYNILIVGYSQTSDCSESLSLF 146
                        GC     + LAQ VFN      D VS+N LI GY Q  D  +S+++F
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
            +MR LG+  D  +   ++  C+ L     G +IHG+ ++      +   ++++D Y + 
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
             ++ +  +F  LP K+  SW+  I G     ++   + LF+ M+  G+G    +Y ++ 
Sbjct: 206 NSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVF 265

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
            +C+       G +              +     +D+  +   M DA KL   LP
Sbjct: 266 RSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLP 320


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/441 (37%), Positives = 257/441 (58%), Gaps = 22/441 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNI----VSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           Y++S     A  LF N+ ++NI    V+W A++A ++Q     +AL + R+M      PN
Sbjct: 303 YSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPN 362

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRK----------GLNFDLFLTNALTDMYAKCG 107
            VT+ +VL ACA       G EIHA  ++           G + DL + NAL DMY+KC 
Sbjct: 363 CVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 422

Query: 108 CLNLAQNVFN---ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFM 162
               A+++F+   +  R+ V++ ++I G++Q  D +++L LF EM     G+  +  +  
Sbjct: 423 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 482

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLH--THLFVANSILDFYTRSGRIDLANKIFDCLP 220
             + ACA+LAAI+ GK+IH   +R H +  +  FVAN +++ Y++ G +D A  +FD + 
Sbjct: 483 CILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMS 542

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            K + SW +++ GYGM G    A+++F+ MR+ G   D ++++ +L ACSH G+V++G  
Sbjct: 543 QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLS 602

Query: 281 YFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
           YFD M AD  + P   HYA  +DLL R G ++ A K +K++P+EP A +W ALL ACR++
Sbjct: 603 YFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVH 662

Query: 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSW 399
            NVEL   A   L  +  ++ G Y L+SN+YA AG+W + +++R LMK    KK PGCSW
Sbjct: 663 SNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSW 722

Query: 400 VQTRDEVQDFVVNDRMKTFTP 420
           VQ +     F V DR    +P
Sbjct: 723 VQGQKGTASFFVGDRSHPLSP 743



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 141/273 (51%), Gaps = 12/273 (4%)

Query: 24  VSWNAMV-ANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82
           V WN ++  +  Q RL+  A+ +   M       +  TL +VL AC      R G   H 
Sbjct: 83  VWWNLLIREHIKQGRLD-SAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHG 141

Query: 83  RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR---DEVSYNILIVGYSQTSD 138
            I   G   ++F+ NAL  MY++CG L  A  +F+ I+ R   D +S+N ++  + ++S+
Sbjct: 142 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 201

Query: 139 CSESLSLFSEMRLL------GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
              +L LFS+M L+        + D++S +  + AC +L A+ Q KE+HG  IR      
Sbjct: 202 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLD 261

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +FV N+++D Y + G ++ A K+F+ +  KD  SWN ++ GY   G    A  LF+ MR+
Sbjct: 262 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 321

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           + +  D V++ A++   S  G   +    F +M
Sbjct: 322 ENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 354



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 11/259 (4%)

Query: 95  LTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
           L   +   Y  CG  + A  V   ++    V +N+LI  + +      ++++   M   G
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
            + D  +    + AC  L + + G   HG+       +++F+ N+++  Y+R G ++ A+
Sbjct: 113 TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 172

Query: 214 KIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAM------REDGVGYDPVSYIA 264
            IFD +    + D  SWN+++  +       TA++LF  M      +      D +S + 
Sbjct: 173 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 232

Query: 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           IL AC     V + K+       +           ++D   + GLME+AVK+   +  + 
Sbjct: 233 ILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK- 291

Query: 325 DANIWGALLGACRIYGNVE 343
           D   W A++      GN +
Sbjct: 292 DVVSWNAMVAGYSQSGNFK 310



 Score = 38.5 bits (88), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A ++F ++++K+ +SW +M+  +  +    +AL +  +M      P+ +T
Sbjct: 524 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 583

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF 91
              VL AC+           H  ++ +GL++
Sbjct: 584 FLVVLYACS-----------HCGMVDQGLSY 603


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 161/417 (38%), Positives = 256/417 (61%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A   F  +   ++VSWN+++A + QN   + A     +M ++   P+ +T
Sbjct: 360 MYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLT 419

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFNI- 118
           L ++    A+    +  + +H  I+R+G L  D+ + NA+ DMYAK G L+ A  VF I 
Sbjct: 420 LVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEII 479

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQG 177
             +D +S+N LI GY+Q    SE++ ++  M     +  +  +++  + A A++ A++QG
Sbjct: 480 PVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG 539

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            +IHG  I+ +LH  +FVA  ++D Y + GR+  A  +F  +P + S +WN +I  +G+ 
Sbjct: 540 MKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIH 599

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G  +  + LF  M ++GV  D V+++++L+ACSH G VE+GK  F  MQ   +KP+  HY
Sbjct: 600 GHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHY 659

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLLGRAG +E A   IK++P++PDA+IWGALLGACRI+GN+ELG +A++ LF +  
Sbjct: 660 GCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDS 719

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           ++ GYY+LLSN+YA  GKW+   KVR L + R  KK PG S ++   +V  F   ++
Sbjct: 720 KNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQ 776



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 192/401 (47%), Gaps = 37/401 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +YA     + +   F  I +K++ +WN+M++ +  N    +A+    ++ + +E  P+  
Sbjct: 160 LYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFY 219

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   VL AC     L  G++IH    + G  +++F+  +L  MY++ G   +A+++F+ +
Sbjct: 220 TFPPVLKACGT---LVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDM 276

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            FRD  S+N +I G  Q  + +++L +  EMRL G+K + V+ +  +  C  L  I    
Sbjct: 277 PFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAM 336

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH   I+  L   LFV+N++++ Y + G ++ A K F  + + D  SWN++I  Y    
Sbjct: 337 LIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQND 396

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQA 287
           +  TA   F  M+ +G   D ++ +++ +  +           HG ++ +G    D +  
Sbjct: 397 DPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIG 456

Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAW 347
           ++V          VD+  + GL++ A K+ + +PV+ D   W  L+     Y    L + 
Sbjct: 457 NAV----------VDMYAKLGLLDSAHKVFEIIPVK-DVISWNTLITG---YAQNGLASE 502

Query: 348 AAEHLFMLK------PQHCGYYILLSNMYAEAGKWDEASKV 382
           A E   M++      P   G ++ +   YA  G   +  K+
Sbjct: 503 AIEVYKMMEECKEIIPNQ-GTWVSILPAYAHVGALQQGMKI 542



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 127/260 (48%), Gaps = 6/260 (2%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           K +HA ++  G    +F++  L ++YA  G ++L++  F+ I  +D  ++N +I  Y   
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHN 195

Query: 137 SDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
               E++  F ++ L+  ++ D  +F   + AC  L     G++IH    +     ++FV
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRKIHCWAFKLGFQWNVFV 252

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
           A S++  Y+R G   +A  +FD +P +D  SWN +I G    G    A+++ + MR +G+
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 312

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
             + V+ ++IL  C   G +         +    ++        ++++  + G +EDA K
Sbjct: 313 KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 316 LIKNLPVEPDANIWGALLGA 335
             + + +  D   W +++ A
Sbjct: 373 AFQQMFIT-DVVSWNSIIAA 391



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 5/150 (3%)

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF-EAMR 251
           +F++  +++ Y   G + L+   FD +P KD  +WN++I  Y   G    AI  F + + 
Sbjct: 151 IFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLL 210

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
              +  D  ++  +L AC  G LV+ G+K          +      A ++ +  R G   
Sbjct: 211 VSEIRPDFYTFPPVLKAC--GTLVD-GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTG 267

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGN 341
            A  L  ++P   D   W A++      GN
Sbjct: 268 IARSLFDDMPFR-DMGSWNAMISGLIQNGN 296


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  311 bits (797), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 154/397 (38%), Positives = 251/397 (63%), Gaps = 1/397 (0%)

Query: 18  IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPG 77
           ++ +++ SW +++A +AQN +  +AL L+  M      PN  T  ++L A         G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           ++IHA  ++   + D+++ +AL DMYA+CG +++A  VF+ +  ++ VS+N LI G+++ 
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
            D   +L +F+EM+  G +    ++    SA A + A++QGK +H   I+       FV 
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG 180

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N+ILD Y +SG +  A K+FD +  KD  +WN+++  +   G    A+  FE MR+ GV 
Sbjct: 181 NTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVH 240

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            + +++++ILTACSHGGLV++GK+YFD M+  +++P   HY  +VDLLGRAGL+ DA+  
Sbjct: 241 LNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVF 300

Query: 317 IKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376
           I  +P++P A +WGALLG+CR++ N ++G +AA+H+F L P   G  +LL N+YA  G+W
Sbjct: 301 IFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQW 360

Query: 377 DEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           D A++VR++MK+   KK P CSWV+  + V  FV ND
Sbjct: 361 DAAARVRKMMKATGVKKEPACSWVEIENSVHMFVAND 397



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 122/233 (52%), Gaps = 2/233 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+  R   A  +F  +  KN VSWNA++A FA+       L +  EM  +       T
Sbjct: 85  MYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFT 144

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++V  A A    L  GK +HA +I+ G     F+ N + DMYAK G +  A+ VF+ + 
Sbjct: 145 YSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVD 204

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V++N ++  ++Q     E+++ F EMR  G+  + ++F+  ++AC++   +K+GK+
Sbjct: 205 KKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQ 264

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
              +    +L   +    +++D   R+G ++ A      +P+K +A+ W  L+
Sbjct: 265 YFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 317


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  311 bits (797), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 156/414 (37%), Positives = 250/414 (60%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     EA  +F  +  K++VSW +++A +AQN +  +A+ L+  M      PN  T
Sbjct: 95  LYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFT 154

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L A         G++IHA  ++   + D+++ +AL DMYA+CG +++A  VF+ + 
Sbjct: 155 FASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLD 214

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N LI G+++  D   +L  F+EM   G +    ++    S+ A L A++QGK 
Sbjct: 215 SKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKW 274

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+       F  N++LD Y +SG +  A K+FD +  KD  +WNT++  +   G 
Sbjct: 275 VHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGL 334

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A++ FE MR+ G+  + V+++ ILTACSHGGLV++GK+YF+ M+   ++P   H+  
Sbjct: 335 GKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVT 394

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +V LLGRAGL+  A+  I  +P+EP A +WGALL ACR++ N ++G +AA+H+F L P  
Sbjct: 395 VVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDD 454

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G  +LL N+YA  G+WD A++VR +MK+   KK P CSWV+  + V  FV ND
Sbjct: 455 SGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVAND 508



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 142/298 (47%), Gaps = 5/298 (1%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P        + ACA+   L   +++HA +       D FL N+L  +Y KCG +  A+ V
Sbjct: 49  PTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKV 108

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ +  +D VS+  LI GY+Q     E++ L   M     K +  +F   + A    A  
Sbjct: 109 FDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADS 168

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G++IH + ++   H  ++V +++LD Y R G +D+A  +FD L  K+  SWN LI G+
Sbjct: 169 GIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G+ +TA+  F  M  +G      +Y ++ ++ +  G +E+GK     M     K T 
Sbjct: 229 ARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTA 288

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
                ++D+  ++G M DA K+   +  + D   W  +L A   YG   LG  A  H 
Sbjct: 289 FAGNTLLDMYAKSGSMIDARKVFDRVD-DKDLVTWNTMLTAFAQYG---LGKEAVSHF 342



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 100/237 (42%), Gaps = 21/237 (8%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           I+ACA    ++  +++H            F+ NS++  Y + G +  A K+FD +  KD 
Sbjct: 58  ITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDM 117

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            SW +LI GY      + AI L   M +     +  ++ ++L A         G+    +
Sbjct: 118 VSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGR----Q 173

Query: 285 MQADSVKPTEMHY-----ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
           + A +VK  + H      + ++D+  R G+M+ A  +   L  +   + W AL+      
Sbjct: 174 IHALAVK-CDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVS-WNALISGFARK 231

Query: 340 GNVELGAWAAEHLFM--LKPQHCGYYILLSNMYA----EAGKWDEASKVRELMKSRE 390
           G+ E        +     +  H  Y  + S++      E GKW  A     ++KSR+
Sbjct: 232 GDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHA----HMIKSRQ 284


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  311 bits (797), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 150/413 (36%), Positives = 257/413 (62%), Gaps = 4/413 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     EA  +FH +  +++V+WN++++   Q      AL++ + M      P+ +T
Sbjct: 213 VYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLT 272

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFD-LFLTNALTDMYAKCGCLNLAQNVFN-I 118
           L ++  A A+G   R  K +H  ++R+G + D +   NA+ DMYAK   +  AQ +F+ +
Sbjct: 273 LVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSM 332

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQG 177
             +D VS+N LI GY Q    +E++  +  M +  G+K    +F+  + A ++L A++QG
Sbjct: 333 PVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQG 392

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
             +H ++I+  L+  ++V   ++D Y + G++  A  +F+ +P + +  WN +I G G+ 
Sbjct: 393 MRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVH 452

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G    A+ LF  M+++G+  D V+++++L ACSH GLV++G+ +FD MQ    + P   H
Sbjct: 453 GHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKH 512

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YACM D+LGRAG +++A   I+N+P++PD+ +WGALLGACRI+GNVE+G  A+++LF L 
Sbjct: 513 YACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELD 572

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
           P++ GYY+L+SNMYA+ GKWD   +VR L++ +  +K PG S ++ +  V  F
Sbjct: 573 PENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVF 625



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 206/401 (51%), Gaps = 27/401 (6%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +  R +EA  +F  ++E+++ +WNAM++   +N    +A+ L   M       ++VT+
Sbjct: 113 YLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTV 172

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           ++VLP C           +H   ++ GL+ +LF+ NAL D+Y K G L  AQ VF+ +  
Sbjct: 173 SSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMEC 232

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD V++N +I G  Q    + +L +F  MR  G+  DV++ +   SA A     +  K +
Sbjct: 233 RDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSL 292

Query: 181 HGVTIRKHLHTHLFVA-NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           H   +R+       +A N+I+D Y +   I+ A ++FD +PV+DS SWNTLI GY   G 
Sbjct: 293 HCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGL 352

Query: 240 VDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK---PTEM 295
            + A+  +  M + +G+     +++++L A SH G +++G +    M A S+K     ++
Sbjct: 353 ANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMR----MHALSIKIGLNVDV 408

Query: 296 HYA-CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
           +   C++DL  + G + +A+ L + +P       W A++    ++G+       AE L +
Sbjct: 409 YVGTCLIDLYAKCGKLAEAMLLFEKMP-RRSTGPWNAIISGLGVHGH------GAEALTL 461

Query: 355 --------LKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
                   +KP H  +  LL+   + AG  D+     ++M+
Sbjct: 462 FSRMQQEGIKPDHVTFVSLLAAC-SHAGLVDQGRSFFDVMQ 501



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 151/325 (46%), Gaps = 35/325 (10%)

Query: 27  NAMVANFAQNRLELKALQLVREM-----PIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81
           N ++A F++  L   A  L+R +     P     P+  T  +++ A           ++H
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFR---PDGFTFPSLIRAAPSN---ASAAQLH 90

Query: 82  ARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDC 139
           A  +R GL    +F + +L   Y + G ++ A  VF+ +S RD  ++N ++ G  + +  
Sbjct: 91  ACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARA 150

Query: 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
           +E++ LF  M   G+  D V+    +  C  L        +H   ++  L   LFV N++
Sbjct: 151 AEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNAL 210

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
           +D Y + G ++ A  +F  +  +D  +WN++I G    G+   A+ +F+ MR  GV  D 
Sbjct: 211 IDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDV 270

Query: 260 VSYIAILTACSHGG-----------LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
           ++ +++ +A + GG           ++ +G    D +  +++          VD+  +  
Sbjct: 271 LTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAI----------VDMYAKLS 320

Query: 309 LMEDAVKLIKNLPVEPDANIWGALL 333
            +E A ++  ++PV+ D+  W  L+
Sbjct: 321 NIEAAQRMFDSMPVQ-DSVSWNTLI 344


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  311 bits (796), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 159/418 (38%), Positives = 254/418 (60%), Gaps = 6/418 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA      +A  +F  I  K++VSWNAM++ +A+     +AL+L  EM   +  P+  T+
Sbjct: 154 YASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTM 213

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL  C     +  G++IH+ I   G   +L L NAL D+Y+KCG +  A  +F  + +
Sbjct: 214 ATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQY 273

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D +S+N LI GY+  +   E+L +F EM  LG   + V+ +  + ACA+L AI  G+ I
Sbjct: 274 KDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWI 333

Query: 181 HGVTIRKHLH---THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           H V I K L    T+  +  S++D Y + G I+ AN++FD +  K  +S N +I G+ M 
Sbjct: 334 H-VYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMH 392

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G  D A +L   M++DG+  D ++++ +L+ACSH GL + G+K F  M  D  ++P   H
Sbjct: 393 GRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEH 452

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y CM+DLLGR+GL ++A +LI ++ +EPD  IWG+LL AC+I+ N+ELG   A+ L  ++
Sbjct: 453 YGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIE 512

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P++ G Y+LLSN+YA + +WD+ ++VR L+  +  KK PGCS ++    V +F++ D+
Sbjct: 513 PKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDK 570



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 165/335 (49%), Gaps = 36/335 (10%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F +I E N +SWN M+   A +   + AL L   M      PNS T   +  +CA+   
Sbjct: 34  VFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKA 93

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
            + GK+IHA+I++ GL  DL +  +L  MYA+ G +  A  VF+                
Sbjct: 94  AQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITG 153

Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
                           I  +D VS+N +I GY++     E+L LF+EM  + +K D  + 
Sbjct: 154 YASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTM 213

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
              +S C +   ++ G++IH         ++L + N+++D Y++ G ++ A+ +F+ L  
Sbjct: 214 ATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQY 273

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-- 279
           KD  SWNTLI GY  +     A+ +F+ M + G   + V+ ++IL AC+H G ++ G+  
Sbjct: 274 KDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWI 333

Query: 280 -KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
             Y D+     +  T +  + ++D+  + G +E A
Sbjct: 334 HVYIDKKLKGIITNTSLQTS-LIDMYAKCGNIEAA 367



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 120/236 (50%), Gaps = 5/236 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K      A  LF  +  K+++SWN ++  +A      +AL + +EM    E PN VT
Sbjct: 254 LYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVT 313

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR--KGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
           + ++LPACA    +  G+ IH  I +  KG+  +  L  +L DMYAKCG +  A  VF+ 
Sbjct: 314 MLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDT 373

Query: 119 SFRDEVSY-NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
                +S  N +I G++       +  L S M+  G++ D ++F+G +SAC++      G
Sbjct: 374 ILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLG 433

Query: 178 KEI-HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
           ++I   +T+   +   L     ++D   RSG    A ++ + + ++ D   W +L+
Sbjct: 434 RKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLL 489



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 121/259 (46%), Gaps = 33/259 (12%)

Query: 109 LNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
           L  A +VF +I   +++S+N +I G++ +SD   +L+L+  M  LG+  +  +F     +
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87

Query: 168 CANLAAIKQGKEIH------GVTIRKHLHTHL---FVANSILD----------------- 201
           CA   A ++GK+IH      G+T+  H+HT L   +  N I++                 
Sbjct: 88  CAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSY 147

Query: 202 -----FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
                 Y   G +D A K+FD +P+KD  SWN +I GY  +G    A+ LF  M +  V 
Sbjct: 148 TAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVK 207

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            D  +   +L+ C+H G VE G++    +              ++DL  + G ME A  L
Sbjct: 208 PDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGL 267

Query: 317 IKNLPVEPDANIWGALLGA 335
            + L  + D   W  L+G 
Sbjct: 268 FEGLQYK-DVISWNTLIGG 285


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  311 bits (796), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 163/415 (39%), Positives = 241/415 (58%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A   F      ++    AM++ +  N L ++AL L R +      PN +T
Sbjct: 423 IYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLT 482

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VLPACA    L+ GKE+H  I++KGL     + +++T MYAK G L+LA   F  + 
Sbjct: 483 MASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMP 542

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V +N++IV +SQ      ++ LF +M   G K D VS    +SACAN  A+  GKE
Sbjct: 543 VKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKE 602

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +R    +  FVA++++D Y++ G++ LA  +FD +  K+  SWN++I  YG  G 
Sbjct: 603 LHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGR 662

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HYA 298
               ++LF  M E G+  D V+++ I++AC H GLV++G  YF  M  +      M H+A
Sbjct: 663 PRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFA 722

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDL GRAG + +A   IK++P  PDA  WG+LLGACR++GNVEL   A++HL  L P 
Sbjct: 723 CMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHGNVELAKLASKHLVELDPN 782

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + GYY+LLSN++A AG+W+   KVR LMK +  +K PG SW+        F   D
Sbjct: 783 NSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQKIPGYSWIDVNGGTHMFSAAD 837



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 176/351 (50%), Gaps = 12/351 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y  +    +A YLF  +  ++ + WN M+  + +N     AL   +EM      PNSV+
Sbjct: 221 LYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVS 280

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
              +L  CA    +R G ++H  +IR G   D  + N +  MY+KCG L  A+ +F+I  
Sbjct: 281 FVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMP 340

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           + D V++N LI GY Q     E+++LF  M   G+K D ++F   + +     ++K  KE
Sbjct: 341 QTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKE 400

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +R  +   +++ ++++D Y + G +++A K F    + D A    +I GY + G 
Sbjct: 401 VHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGL 460

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+NLF  + ++G+  + ++  ++L AC+    ++ GK    E+  D +K   +   C
Sbjct: 461 NVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGK----ELHCDILKKG-LENVC 515

Query: 300 MVD-----LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
            V      +  ++G ++ A +  + +PV+ D+  W  ++ +    G  EL 
Sbjct: 516 QVGSSITYMYAKSGRLDLAYQFFRRMPVK-DSVCWNLMIVSFSQNGKPELA 565



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 160/324 (49%), Gaps = 9/324 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY       +   LF  +     + WN ++  F+       AL     M   N  P+  T
Sbjct: 120 MYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYT 179

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V+ AC   + +   K +H      G + DLF+ ++L  +Y   G ++ A+ +F+ + 
Sbjct: 180 FPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELP 239

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD + +N+++ GY +  D + +L  F EMR   +K + VSF+  +S CA    ++ G +
Sbjct: 240 VRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQ 299

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+ IR    +   VAN+I+  Y++ G +  A KIFD +P  D+ +WN LI GY   G 
Sbjct: 300 LHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGF 359

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK---PTEMH 296
            D A+ LF+AM   GV  D +++ + L +    G +    KY  E+ +  V+   P +++
Sbjct: 360 TDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSL----KYCKEVHSYIVRHGVPFDVY 415

Query: 297 Y-ACMVDLLGRAGLMEDAVKLIKN 319
             + +VD+  + G +E A K  + 
Sbjct: 416 LKSALVDIYFKGGDVEMACKTFQQ 439



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 120/259 (46%), Gaps = 2/259 (0%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQT 136
           ++IHA+++  G+N  L L + +  MY  C       N+F  +     + +N LI G+S  
Sbjct: 96  RQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSML 155

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
                +L  F  M    +  D  +F   I AC  L  +   K +H +      H  LF+ 
Sbjct: 156 GCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIG 215

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           +S++  YT +G I  A  +FD LPV+D   WN ++ GY   G+ ++A+  F+ MR   V 
Sbjct: 216 SSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVK 275

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            + VS++ +L+ C+  G+V  G +    +     +        ++ +  + G + DA K+
Sbjct: 276 PNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKI 335

Query: 317 IKNLPVEPDANIWGALLGA 335
              +P + D   W  L+  
Sbjct: 336 FDIMP-QTDTVTWNGLIAG 353



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 7/197 (3%)

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           +Q ++IH   +   ++  L + + +L  Y           +F  L +  S  WN LI G+
Sbjct: 93  QQVRQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGF 152

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL--VEKGKKYFDEMQADSVKP 292
            MLG  D A+  F  M    V  D  ++  ++ AC  GGL  V   K   +  ++     
Sbjct: 153 SMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKAC--GGLNNVPLCKMVHELARSMGFHM 210

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG--NVELGAWAAE 350
                + ++ L    G + DA  L   LPV  D  +W  +L      G  N  LG +   
Sbjct: 211 DLFIGSSLIKLYTDNGYIHDAKYLFDELPVR-DCILWNVMLNGYVKNGDFNSALGTFQEM 269

Query: 351 HLFMLKPQHCGYYILLS 367
               +KP    +  LLS
Sbjct: 270 RNSCVKPNSVSFVCLLS 286


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  311 bits (796), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 161/417 (38%), Positives = 255/417 (61%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A   F  +   ++VSWN+++A + QN   + A     +M ++   P+ +T
Sbjct: 360 MYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLT 419

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           L ++    A+    +  + +H  I+R+G L  D+ + NA+ DMYAK G L+ A  VF I 
Sbjct: 420 LVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEII 479

Query: 120 F-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQG 177
             +D +S+N LI GY+Q    SE++ ++  M     +  +  +++  + A A++ A++QG
Sbjct: 480 LVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG 539

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
             IHG  I+ +LH  +FVA  ++D Y + GR+  A  +F  +P + S +WN +I  +G+ 
Sbjct: 540 MRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIH 599

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G  +  + LF  M ++GV  D V+++++L+ACSH G VE+GK  F  MQ   +KP+  HY
Sbjct: 600 GHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHY 659

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLLGRAG +E A   IK++P++PDA+IWGALLGACRI+GN+ELG +A++ LF +  
Sbjct: 660 GCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDS 719

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           ++ GYY+LLSN+YA  GKW+   KVR L + R  KK PG S ++   +V  F   ++
Sbjct: 720 KNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQ 776



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 171/346 (49%), Gaps = 27/346 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +YA     + +   F  I +K++ +WN+M++ +  N    +A+    ++ + +E  P+  
Sbjct: 160 LYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFY 219

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   VL AC     L  G+ IH    + G  +++F+  +L  MY++ G   +A+++F+ +
Sbjct: 220 TFPPVLKACGT---LVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDM 276

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            FRD  S+N +I G  Q  + +++L +  EMRL G+K + V+ +  +  C  L  I    
Sbjct: 277 PFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAM 336

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH   I+  L   LFV+N++++ Y + G ++ A K F  + + D  SWN++I  Y    
Sbjct: 337 LIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQND 396

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQA 287
           +  TA   F  M+ +G   D ++ +++ +  +           HG ++ +G    D +  
Sbjct: 397 DPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIG 456

Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           ++V          VD+  + GL++ A K+ + + V+ D   W  L+
Sbjct: 457 NAV----------VDMYAKLGLLDSAHKVFEIILVK-DVISWNTLI 491



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 126/260 (48%), Gaps = 6/260 (2%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           K +HA ++  G    +F++  L ++YA  G ++L++  F+ I  +D  ++N +I  Y   
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHN 195

Query: 137 SDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
               E++  F ++ L+  ++ D  +F   + AC  L     G+ IH    +     ++FV
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRRIHCWAFKLGFQWNVFV 252

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
           A S++  Y+R G   +A  +FD +P +D  SWN +I G    G    A+++ + MR +G+
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 312

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
             + V+ ++IL  C   G +         +    ++        ++++  + G +EDA K
Sbjct: 313 KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 316 LIKNLPVEPDANIWGALLGA 335
             + + +  D   W +++ A
Sbjct: 373 AFQQMFIT-DVVSWNSIIAA 391



 Score = 45.1 bits (105), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 5/150 (3%)

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF-EAMR 251
           +F++  +++ Y   G + L+   FD +P KD  +WN++I  Y   G    AI  F + + 
Sbjct: 151 IFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLL 210

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
              +  D  ++  +L AC  G LV+ G++          +      A ++ +  R G   
Sbjct: 211 VSEIRPDFYTFPPVLKAC--GTLVD-GRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTG 267

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGN 341
            A  L  ++P   D   W A++      GN
Sbjct: 268 IARSLFDDMPFR-DMGSWNAMISGLIQNGN 296


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  310 bits (795), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 157/447 (35%), Positives = 257/447 (57%), Gaps = 33/447 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA   R AEA  +F  +  +++V+W+ M+  + Q+ L   AL L  EM  +N  P+ + 
Sbjct: 166 MYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMM 225

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---- 116
           L+ VL AC R   L  GK IH  I+   +  D  L +AL  MYA CG ++LA N+F    
Sbjct: 226 LSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMT 285

Query: 117 ----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                        +  +D V ++ +I GY+++    E+L+LF+E
Sbjct: 286 PKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNE 345

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M+ LG+K D V+ +  I+ACA+L A+ Q K IH    +      L + N++++ Y + G 
Sbjct: 346 MQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGS 405

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           ++ A +IFD +P K+  SW  +I  + M G+  +A+  F  M ++ +  + ++++ +L A
Sbjct: 406 LERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYA 465

Query: 269 CSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           CSH GLVE+G+K F  M    ++ P  +HY CMVDL GRA L+ +A++L++ +P+ P+  
Sbjct: 466 CSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVI 525

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           IWG+L+ ACR++G +ELG +AA+ L  L P H G ++ LSN+YA+A +W++  +VR+LMK
Sbjct: 526 IWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMK 585

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVNDR 414
            +   K  GCS  +  +E+ +F+V DR
Sbjct: 586 HKGISKERGCSRFELNNEIHEFLVADR 612



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 177/421 (42%), Gaps = 82/421 (19%)

Query: 41  KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100
           K L +   M       +  +   +L A +R   L  G EIH    + G + D F+   L 
Sbjct: 105 KTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLV 164

Query: 101 DMYAKCGCLNLAQNVFNISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
            MYA CG +  A+ +F+  F RD V+++I+I GY Q+   +++L LF EM+   ++ D +
Sbjct: 165 RMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEM 224

Query: 160 SFMGAISACANLAAIKQGKEIH------GVTIRKHLHT---------------------- 191
                +SAC     +  GK IH       + +  HL +                      
Sbjct: 225 MLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKM 284

Query: 192 ---HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
              +L  + +++  Y++ G+I+ A  +F+ +  KD   W+ +I GY        A+NLF 
Sbjct: 285 TPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFN 344

Query: 249 AMREDGVGYDPVSYIAILTACSH-----------------------------------GG 273
            M+  G+  D V+ ++++TAC+H                                    G
Sbjct: 345 EMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCG 404

Query: 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWG 330
            +E+ ++ FD+M   +V    + + CM+      G    A++    +    +EP+   + 
Sbjct: 405 SLERARRIFDKMPRKNV----ISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFV 460

Query: 331 ALLGACRIYGNVELG-----AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385
            +L AC   G VE G     +   EH   + P+H  +Y  + +++  A    EA ++ E 
Sbjct: 461 GVLYACSHAGLVEEGRKIFYSMINEH--NITPKHV-HYGCMVDLFGRANLLREALELVEA 517

Query: 386 M 386
           M
Sbjct: 518 M 518



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 117/245 (47%), Gaps = 2/245 (0%)

Query: 78  KEIHARIIRKGLNFDL-FLTNALTDMYAKCGCLNLAQNVFNISFRDEVSY-NILIVGYSQ 135
           K++HA+I+R  L+     L   +    A    L+ A +VFN+  + E    N  +   S+
Sbjct: 40  KQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSR 99

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
           + +  ++L ++  MR  G+  D  SF   + A + + ++ +G EIHG+  +    +  FV
Sbjct: 100 SEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFV 159

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
              ++  Y   GRI  A  +FD +  +D  +W+ +I GY   G  + A+ LFE M+   V
Sbjct: 160 QTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNV 219

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
             D +    +L+AC   G +  GK   D +  +++       + +V +    G M+ A+ 
Sbjct: 220 EPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALN 279

Query: 316 LIKNL 320
           L + +
Sbjct: 280 LFEKM 284


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  310 bits (795), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 159/417 (38%), Positives = 253/417 (60%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MYAK      A  +F  +  +N VSW+AM+  +  +    +AL+L  +M + +   P  V
Sbjct: 254 MYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPV 313

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL +VL ACA+   L  G+++H  II+ G   D+ L N L  MYAKCG ++ A   F+ +
Sbjct: 314 TLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXM 373

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + +D VS++ ++ G  Q  + + +LS+F  M+L G+  D+ + +G + AC++LAA++ G 
Sbjct: 374 NPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGF 433

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             HG  I +   T   + N+++D Y++ G+I  A ++F+ +   D  SWN +I+GYG+ G
Sbjct: 434 CSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHG 493

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A+ LF  +   G+  D +++I +L++CSH GLV +G+ +FD M  D S+ P   H 
Sbjct: 494 LGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHC 553

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVD+LGRAGL+++A   I+N+P EPD  IW ALL ACRI+ N+ELG   ++ +  L P
Sbjct: 554 ICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGP 613

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +  G ++LLSN+Y+ AG+WD+A+ +R   K    KK PGCSW++    V  FV  D+
Sbjct: 614 ESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQ 670



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 182/371 (49%), Gaps = 5/371 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK     EA  LF +++ +++V+WNAM+A  +   L   A+QL+ +M      PNS T+
Sbjct: 154 YAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTI 213

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
             VLP       L  GK +H   +R+  +  + +   L DMYAKC CL  A+ +F++   
Sbjct: 214 VGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGV 273

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAAIKQGKE 179
           R+EVS++ +I GY  +    E+L LF +M L   M    V+    + ACA L  + +G++
Sbjct: 274 RNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRK 333

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+      + + N++L  Y + G ID A + FD +  KDS S++ ++ G    G 
Sbjct: 334 LHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGN 393

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+++F  M+  G+  D  + + +L ACSH   ++ G      +         +    
Sbjct: 394 AAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNA 453

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG-NVE-LGAWAAEHLFMLKP 357
           ++D+  + G +  A ++   +    D   W A++    I+G  +E LG +       LKP
Sbjct: 454 LIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKP 512

Query: 358 QHCGYYILLSN 368
               +  LLS+
Sbjct: 513 DDITFICLLSS 523



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 165/343 (48%), Gaps = 3/343 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y   ++   A  LF  I   +++ WN ++  +A N     A+ L   M      PN  T
Sbjct: 52  LYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYT 111

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
              VL AC+    +  G EIH+     GL  D+F+  AL D YAKCG L  AQ +F ++S
Sbjct: 112 YPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS 171

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++N +I G S    C +++ L  +M+  G+  +  + +G +       A+  GK 
Sbjct: 172 HRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKA 231

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  +R+     + V   +LD Y +   +  A KIFD + V++  SW+ +I GY     
Sbjct: 232 LHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDC 291

Query: 240 VDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
           +  A+ LF+ M  +D +   PV+  ++L AC+    + +G+K    +         +   
Sbjct: 292 MKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGN 351

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
            ++ +  + G+++DA++    +    D+  + A++  C   GN
Sbjct: 352 TLLSMYAKCGVIDDAIRFFDXMN-PKDSVSFSAIVSGCVQNGN 393



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 167/383 (43%), Gaps = 45/383 (11%)

Query: 49  MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
           MP+  E  N+    ++L AC +   L   K+IH   ++   N D  + + LT +Y  C  
Sbjct: 1   MPLRXEVKNNYL--HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQ 58

Query: 109 LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
           + LA+ +F+ I     + +N +I  Y+       ++ L+  M  LG++ +  ++   + A
Sbjct: 59  VVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKA 118

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C+ L AI+ G EIH       L + +FV  +++DFY + G +  A ++F  +  +D  +W
Sbjct: 119 CSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAW 178

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-------- 279
           N +I G  + G  D A+ L   M+E+G+  +  + + +L        +  GK        
Sbjct: 179 NAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVR 238

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGR-----------------------AGLMEDAVKL 316
           + FD          +M+  C   L  R                       +  M++A++L
Sbjct: 239 RSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALEL 298

Query: 317 IKNL----PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN---- 368
              +     ++P     G++L AC    ++  G     H +++K       ILL N    
Sbjct: 299 FDQMILKDAMDPTPVTLGSVLRACAKLTDLSRG--RKLHCYIIKLGXV-LDILLGNTLLS 355

Query: 369 MYAEAGKWDEASKVRELMKSREA 391
           MYA+ G  D+A +  + M  +++
Sbjct: 356 MYAKCGVIDDAIRFFDXMNPKDS 378


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  310 bits (795), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 155/413 (37%), Positives = 244/413 (59%), Gaps = 2/413 (0%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
            EA  LF N+ EK+ +SW  ++    QN L  +A+   +EM I     +  T  +VL AC
Sbjct: 221 VEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTAC 280

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYN 127
                L  GK+IHA IIR     ++F+ +AL DMY KC  +  A+ VF  +  ++ +S+ 
Sbjct: 281 GGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWT 340

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            ++VGY Q     E++ +F +M+   +  D  +    IS+CANLA++++G + HG  +  
Sbjct: 341 AMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALAS 400

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            L   + V+N+++  Y + G ++ A+++F  + ++D  SW  L+ GY   G+ +  I+LF
Sbjct: 401 GLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLF 460

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGR 306
           E M   G+  D V+++ +L+ACS  GLVEKG  YF+ M +   + P   HY CM+DLL R
Sbjct: 461 ETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSR 520

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366
           AG +E+A   I  +P  PDA  W  LL +CR+ GN+E+G WAAE L  L+PQ+   YILL
Sbjct: 521 AGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILL 580

Query: 367 SNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
           S++YA  GKWD+ +K+R+ M+    KK PG SW++ +++V  F  +DR   F+
Sbjct: 581 SSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFS 633



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 175/372 (47%), Gaps = 34/372 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVT 60
           Y+K     +   +F ++   ++VSWN++++ +A N L  +++++   M        N +T
Sbjct: 81  YSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRIT 140

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---- 116
            + +L   +   F+  G++IH +I + G    LF+ + L DMYAK G +N A  +F    
Sbjct: 141 FSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIP 200

Query: 117 ----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                       N+  +D +S+  +I G +Q     E++  F E
Sbjct: 201 EKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKE 260

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M + G   D  +F   ++AC    A+ +GK+IH   IR     ++FV +++LD Y +   
Sbjct: 261 MGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRN 320

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +  A  +F  +  K+  SW  +++GYG  G  + A+ +F  M+ + +  D  +  +++++
Sbjct: 321 VKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISS 380

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           C++   +E+G ++  +  A  +         ++ L G+ G +E A +L   + +  + + 
Sbjct: 381 CANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVS- 439

Query: 329 WGALLGACRIYG 340
           W AL+     +G
Sbjct: 440 WTALVSGYAQFG 451



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 150/299 (50%), Gaps = 4/299 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  +  KN++SW AM+  + QN    +A+++  +M  +   P+  T
Sbjct: 314 MYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFT 373

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+ +CA    L  G + H + +  GL   + ++NAL  +Y KCG L  A  +F+ + 
Sbjct: 374 LGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMK 433

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RDEVS+  L+ GY+Q    +E++SLF  M   G+  D V+F+G +SAC+    +++G  
Sbjct: 434 IRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYH 493

Query: 180 IHGVTIRKHLHTHLFVANS-ILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGML 237
                +++H  T +    + ++D  +R+GR++ A    + +P   D+  W TL+    + 
Sbjct: 494 YFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLN 553

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
           G ++      E++ +     +P SYI + +  +  G  +   K    M+   VK    H
Sbjct: 554 GNLEIGKWAAESLHKLE-PQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGH 611



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 177/433 (40%), Gaps = 109/433 (25%)

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---- 117
           T  L  C         K++H RIIR   N + FL N L + Y K G L  A+NVF+    
Sbjct: 9   TAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQ 68

Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                       +   D VS+N L+ GY+     SES+ +++ M
Sbjct: 69  PNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMM 128

Query: 150 RLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
              G +  + ++F   +   +N   +  G++IHG   +    ++LFV + ++D Y ++G 
Sbjct: 129 LKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGF 188

Query: 209 IDLANKI-------------------------------FDCLPVKDSASWNTLILGYGML 237
           I+ AN+I                               FD +P KDS SW T+I G    
Sbjct: 189 INDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQN 248

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK---------YFDEM--- 285
           G    A++ F+ M  +G   D  ++ ++LTAC     +++GK+         Y D +   
Sbjct: 249 GLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVG 308

Query: 286 --------QADSVKPTE-----------MHYACMVDLLGRAGLMEDAVKLIKNL---PVE 323
                   +  +VK  E           + +  M+   G+ G  E+AV++  ++    + 
Sbjct: 309 SALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIH 368

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY--YILLSN----MYAEAGKWD 377
           PD    G+++ +C    ++E GA      F  +    G   ++ +SN    +Y + G  +
Sbjct: 369 PDDFTLGSVISSCANLASLEEGAQ-----FHGQALASGLICFVTVSNALITLYGKCGSLE 423

Query: 378 EASKVRELMKSRE 390
            A ++   MK R+
Sbjct: 424 HAHQLFHEMKIRD 436



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           +  A+  C       Q K++H   IR   +   F+ N++++ Y + G +  A  +FD +P
Sbjct: 8   YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIP 67

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
             +  SWNTL+  Y  LG +     +F++M      +D VS+ ++L+  +  GL+ +  +
Sbjct: 68  QPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPN----HDVVSWNSLLSGYAGNGLISESVR 123

Query: 281 YFDEMQAD-SVKPTEMHYACMVDLLGRAGLME 311
            ++ M  D SV    + ++ M+ L    G ++
Sbjct: 124 VYNMMLKDGSVNLNRITFSTMLILSSNRGFVD 155


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  310 bits (795), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 169/430 (39%), Positives = 255/430 (59%), Gaps = 18/430 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEK----NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           Y++  R  +A  LF  I E+    N+V+W+A++A +AQ  L  +AL + R+M +    PN
Sbjct: 326 YSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPN 385

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD-------LFLTNALTDMYAKCGCLN 110
            VTL ++L  CA    L  GKE H   I+  LN D       L + NAL DMY+KC    
Sbjct: 386 VVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPK 445

Query: 111 LAQNVFNI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAI 165
            A+ +F++     R  V++ +LI G +Q  + +E+L LFS+M      +  +  +   A+
Sbjct: 446 AARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCAL 505

Query: 166 SACANLAAIKQGKEIHGVTIRKHLHT-HLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
            ACA L A++ G++IH   +R    +  LFVAN ++D Y++SG +D A  +FD +  ++ 
Sbjct: 506 MACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNG 565

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            SW +L+ GYGM G  + A+ +F  M++  +  D V+++ +L ACSH G+V++G  YF+ 
Sbjct: 566 VSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNG 625

Query: 285 MQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           M  D  V P   HYACMVDLL RAG +++A++LI+ +P++P   +W ALL ACR+Y NVE
Sbjct: 626 MNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVE 685

Query: 344 LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTR 403
           LG +AA  L  L+  + G Y LLSN+YA A  W + +++R LMK+   KK PGCSWVQ R
Sbjct: 686 LGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGR 745

Query: 404 DEVQDFVVND 413
                F   D
Sbjct: 746 KGTATFFAGD 755



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 162/334 (48%), Gaps = 14/334 (4%)

Query: 1   MYAKSSRPAEASYLFHNI--AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY   + PA+A  +   +  +   +  WN ++            LQL R M      P+ 
Sbjct: 86  MYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDH 145

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T   VL AC      R G  +HA +   G  +++F+ N L  MY +CG    A+ VF+ 
Sbjct: 146 YTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDE 205

Query: 118 ---ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAA 173
                  D VS+N ++  Y Q  D   ++ +F  M   LG++ D VS +  + ACA++ A
Sbjct: 206 MRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGA 265

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
             +GK++HG  +R  L   +FV N+++D Y + G ++ ANK+F+ + VKD  SWN ++ G
Sbjct: 266 WSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTG 325

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
           Y  +G  D A+ LFE +RE+ +  + V++ A++   +  GL  +    F +M     +P 
Sbjct: 326 YSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPN 385

Query: 294 EMHYACMVDLLGRAGLME-------DAVKLIKNL 320
            +    ++     AG +         A+K I NL
Sbjct: 386 VVTLVSLLSGCASAGTLLHGKETHCHAIKWILNL 419



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 103/265 (38%), Gaps = 62/265 (23%)

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           +N LI          + L L+  M+ LG + D  +F   + AC  + + + G  +H V  
Sbjct: 113 WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 172

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
                 ++FV N ++  Y R G                  +W             + A  
Sbjct: 173 ASGFEWNVFVGNGLVSMYGRCG------------------AW-------------ENARQ 201

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           +F+ MRE GVG D VS+ +I+ A   GG   +  K F+ M  D                 
Sbjct: 202 VFDEMRERGVG-DLVSWNSIVAAYMQGGDSIRAMKMFERMTED----------------- 243

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365
             G+  DAV L+  LP       W       +++G   L +   E +F+           
Sbjct: 244 -LGIRPDAVSLVNVLPACASVGAWSR---GKQVHG-YALRSGLFEDVFVGNA-------- 290

Query: 366 LSNMYAEAGKWDEASKVRELMKSRE 390
           + +MYA+ G  +EA+KV E MK ++
Sbjct: 291 VVDMYAKCGMMEEANKVFERMKVKD 315



 Score = 45.4 bits (106), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 11/91 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+KS     A  +F N+ ++N VSW +++  +  +    +ALQ+  EM      P+ VT
Sbjct: 543 MYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVT 602

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF 91
              VL AC+           H+ ++ +G+N+
Sbjct: 603 FVVVLYACS-----------HSGMVDQGINY 622


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  310 bits (795), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 160/414 (38%), Positives = 246/414 (59%), Gaps = 2/414 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A  +F  +  K + SWNA++    QN    KAL L   M      P+  T+
Sbjct: 446 YAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTI 505

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            ++L ACAR   L  GKEIH  ++R G   D F+  +L  +Y +CG + LA+  F N+  
Sbjct: 506 ASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEE 565

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ V +N +I G+SQ     ++L +F +M    +  D +S +GA+ AC+ ++A++ GKE+
Sbjct: 566 KNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKEL 625

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++ HL  H FV  S++D Y + G ++ +  IFD + +K   +WN LI GYG+ G  
Sbjct: 626 HCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHG 685

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYAC 299
             AI LF++M+  G   D V++IA+LTAC+H GLV +G +Y  +MQ+   +KP   HYAC
Sbjct: 686 RKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYAC 745

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VD+LGRAG + +A++L+  LP +PD+ IW +LL +CR Y ++++G   A  L  L P  
Sbjct: 746 VVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDK 805

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
              Y+L+SN YA  GKWDE  K+R+ MK    +K+ GCSW++   +V  F+V D
Sbjct: 806 AENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGD 859



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 130/238 (54%), Gaps = 11/238 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y +  +   A   F N+ EKN+V WN M+  F+QN     AL +  +M     +P+ ++
Sbjct: 546 LYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEIS 605

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +   L AC++   LR GKE+H   ++  L    F+T +L DMYAKCGC+  +QN+F+ + 
Sbjct: 606 IIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVH 665

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            + EV++N+LI GY       +++ LF  M+  G + D V+F+  ++AC +   + +G E
Sbjct: 666 LKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLE 725

Query: 180 IHG-----VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
             G       I+  L  +      ++D   R+GR++ A ++ + LP K DS  W++L+
Sbjct: 726 YLGQMQSLFGIKPKLEHY----ACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLL 779



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 199/428 (46%), Gaps = 53/428 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE--FPNS 58
           MY K      A  +F  + ++N+VSWN+++    +N +  ++  L + +   +E   P+ 
Sbjct: 240 MYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDV 299

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
            T+  V+P CAR   +R G   H   ++ GL  +L + ++L DMY+KCG L  A+ +F+ 
Sbjct: 300 ATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDT 359

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQG 177
           + ++ +S+N +I GYS+  D   +  L  +M++   +K + V+ +  +  C       + 
Sbjct: 360 NEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKL 419

Query: 178 KEIHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           KEIHG  +R   + +   VAN+ +  Y + G +  A  +F  +  K  +SWN LI G+  
Sbjct: 420 KEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQ 479

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG------- 278
            G    A++L+  MR  G+  D  +  ++L+AC+           HG ++  G       
Sbjct: 480 NGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFI 539

Query: 279 -----------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL- 320
                            K +FD M+  ++    + +  M++   +     DA+ +   + 
Sbjct: 540 CISLVSLYVQCGKILLAKLFFDNMEEKNL----VCWNTMINGFSQNEFPFDALDMFHQML 595

Query: 321 --PVEPDA-NIWGALLGACRIYGNVELGAWAAEHLFMLKP---QHCGYYILLSNMYAEAG 374
              + PD  +I GA LGAC     + LG     H F +K    +H      L +MYA+ G
Sbjct: 596 SSKIWPDEISIIGA-LGACSQVSALRLG--KELHCFAVKSHLTEHSFVTCSLIDMYAKCG 652

Query: 375 KWDEASKV 382
             +++  +
Sbjct: 653 CMEQSQNI 660



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 175/376 (46%), Gaps = 41/376 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MY+    P ++  +F+    KN+  WNA+++ + +N L   A+ +  EM    EF P++ 
Sbjct: 138 MYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNF 197

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL  V+ AC   + +R G+ +H   ++  +  D+F+ NAL  MY K G +  A  VF+ +
Sbjct: 198 TLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKM 257

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL--LGMKHDVVSFMGAISACANLAAIKQ 176
             R+ VS+N ++    +     ES  LF  +     G+  DV + +  I  CA    ++ 
Sbjct: 258 PQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRL 317

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G   HG+ ++  L   L V +S+LD Y++ G +  A  +FD    K+  SWN++I GY  
Sbjct: 318 GMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSK 376

Query: 237 LGEVDTAINLFEAMR-EDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDE 284
             +   A  L   M+ ED V  + V+ + +L  C            HG  +  G    DE
Sbjct: 377 DRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDE 436

Query: 285 MQADS-----VKPTEMHYA----CMVD---------LLG---RAGLMEDAVK---LIKNL 320
           + A++      K   +HYA    C ++         L+G   + G    A+    L++  
Sbjct: 437 LVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGS 496

Query: 321 PVEPDANIWGALLGAC 336
            +EPD     +LL AC
Sbjct: 497 GLEPDLFTIASLLSAC 512



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 108/221 (48%), Gaps = 7/221 (3%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVFNISFR 121
           +L  C     +  G++IH   I    +F  D+ L   L  MY+ C     +  VFN S R
Sbjct: 99  LLQLCGEYKNIEIGRKIH-NFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRR 157

Query: 122 DEVS-YNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             +  +N L+ GY + S   +++ +F EM  L     D  +    I AC  +  ++ G+ 
Sbjct: 158 KNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEA 217

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  ++  + + +FV N+++  Y + G ++ A K+FD +P ++  SWN+++      G 
Sbjct: 218 VHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGV 277

Query: 240 VDTAINLFEAMR--EDGVGYDPVSYIAILTACSHGGLVEKG 278
            + +  LF+ +   ++G+  D  + + ++  C+  G V  G
Sbjct: 278 FEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLG 318


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  310 bits (795), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 161/422 (38%), Positives = 248/422 (58%), Gaps = 18/422 (4%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F     +++VSWN+M+  + +     +AL   REM +    P+ VT+  V+ +CA+
Sbjct: 133 ARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQ 192

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-------ISF--- 120
              L  G+E H  I   GL   + L NAL DMY KCG L  A+ +F+       +S+   
Sbjct: 193 LEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTM 252

Query: 121 -------RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
                  +D V +N +I GY   +   E+L+LF+EM+ + +  D V+ +  +SAC+ L A
Sbjct: 253 LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGA 312

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           +  G  IH    +  L  ++ +  +++D Y + G+I  A ++F  LP ++S +W  +I G
Sbjct: 313 LDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISG 372

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKP 292
             + G    AI  F  M ++ V  D V+++ +L+AC HGGLVE+G+KYF +M +  ++ P
Sbjct: 373 LALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSP 432

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
              HY+CMVDLLGRAGL+E+A +LIK++P+E DA +WGAL  ACRI+GNV +G  AA  L
Sbjct: 433 KLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKL 492

Query: 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVN 412
             + P   G Y+LL+NMY EA  W EA K R+LM+ R  +K PGCS ++    V +F+V 
Sbjct: 493 LQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSIEVNGIVYEFIVR 552

Query: 413 DR 414
           D+
Sbjct: 553 DK 554



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 168/346 (48%), Gaps = 19/346 (5%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLV-REMPIHNEFPNSVTLTNVLPACARGH 72
           +  N    N  SWN  +  F  +    +A+ L  R +      P++ T   +  ACAR  
Sbjct: 34  ILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLS 93

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNILIV 131
            +R G EI   ++  G + D+F++NA+  +   CG L+ A+ +F+ S  RD VS+N +I 
Sbjct: 94  LIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMIN 153

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           GY +     E+L+ + EM++ G+K D V+ +G +S+CA L  +  G+E H       L  
Sbjct: 154 GYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKL 213

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDC----------------LPVKDSASWNTLILGYG 235
            + +AN+++D Y + G ++ A K+FD                 +P KD   WN +I GY 
Sbjct: 214 TVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYV 273

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
                  A+ LF  M+   +  D V+ ++ L+ACS  G ++ G      ++   +     
Sbjct: 274 HANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVA 333

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
               ++D+  + G +  A+++ + LP   ++  W A++    ++GN
Sbjct: 334 LGTALIDMYAKCGKITKAIQVFQELPGR-NSLTWTAIISGLALHGN 378



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 166/390 (42%), Gaps = 69/390 (17%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVS----------------WNAMVANFAQNRLELKALQ 44
           MY K      A  LF ++  K +VS                WNAM+  +       +AL 
Sbjct: 224 MYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALA 283

Query: 45  LVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104
           L  EM   N  P+ VT+ + L AC++   L  G  IH  I +  L+ ++ L  AL DMYA
Sbjct: 284 LFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYA 343

Query: 105 KCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMG 163
           KCG +  A  VF  +  R+ +++  +I G +   +   +++ FSEM    +  D V+F+G
Sbjct: 344 KCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLG 403

Query: 164 AISACANLAAIKQGKE-IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
            +SAC +   +++G++    ++ + +L   L   + ++D   R+G ++ A ++   +P++
Sbjct: 404 LLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIE 463

Query: 223 -DSASWNTLILGYGMLGEV----------------DTAINLFEA---------------- 249
            D+  W  L     + G V                D+ I +  A                
Sbjct: 464 ADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXR 523

Query: 250 --MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP-TEMHYACMVDLLGR 306
             MR+ GV   P         CS    +E     ++ +  D   P +E  Y C++ L  +
Sbjct: 524 KLMRQRGVEKTP--------GCSS---IEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQ 572

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
             L+E         P+  D +++G+  G C
Sbjct: 573 LELVE----CTPVFPIFGDNSLFGSDFGRC 598



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 122/244 (50%), Gaps = 19/244 (7%)

Query: 108 CLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAIS 166
           C N+   +FN    +  S+N+ I G+  + +  E++ L+   ++  G K D  ++     
Sbjct: 31  CTNI---LFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFK 87

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
           ACA L+ I+ G EI G  +     + +FV+N+++      G +D A K+FD   V+D  S
Sbjct: 88  ACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVS 147

Query: 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
           WN++I GY   G    A+N +  M+ +G+  D V+ I ++++C+    ++ G++    ++
Sbjct: 148 WNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIE 207

Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE-------------PDANI--WGA 331
            + +K T      ++D+  + G +E A KL  ++  +             PD ++  W A
Sbjct: 208 ENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNA 267

Query: 332 LLGA 335
           ++G 
Sbjct: 268 MIGG 271


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  310 bits (794), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 167/454 (36%), Positives = 258/454 (56%), Gaps = 40/454 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K    A A   F  +A +NIVSWN+++  + QN    KAL++   M  +   P+ +T
Sbjct: 195 MYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEIT 254

Query: 61  LTNVLPACARGHFLRPGKEIHARII-RKGLNFDLFLTNALTDMYAKCGCLNLAQNVF--- 116
           L +V+ ACA    +R G +IHAR++ R     DL L NAL DMYAKC  +N A+ VF   
Sbjct: 255 LASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRM 314

Query: 117 -----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
                                        N+  ++ VS+N LI GY+Q  +  E++ LF 
Sbjct: 315 PLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFL 374

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH------GVTIRKHLHTHLFVANSILD 201
            ++   +     +F   ++ACANLA +K G++ H      G   +    + +FV NS++D
Sbjct: 375 LLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLID 434

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y + G ++    +F+ +  +D  SWN +I+GY   G    A+ +F  M   G   D V+
Sbjct: 435 MYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVT 494

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
            I +L+ACSH GLVE+G++YF  M+ +  + P + H+ CMVDLLGRAG +++A  LI+ +
Sbjct: 495 MIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTM 554

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
           P++PD  +WG+LL AC+++GN+ELG + AE L  + P + G Y+LLSNMYAE G+W +  
Sbjct: 555 PMQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVV 614

Query: 381 KVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +VR+ M+ R   K PGCSW++ +  V  F+V D+
Sbjct: 615 RVRKQMRQRGVIKQPGCSWIEIQSRVHVFMVKDK 648



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 158/298 (53%), Gaps = 8/298 (2%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
            K  +  EA  +F ++ E +  SWNAMV+ FAQ+    +AL+   +M   +   N  +  
Sbjct: 96  TKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFG 155

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           + L ACA    L  G +IHA I +     D+++ +AL DMY+KCG +  AQ  F+ ++ R
Sbjct: 156 SALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVR 215

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + VS+N LI  Y Q     ++L +F  M   G++ D ++    +SACA+ +AI++G +IH
Sbjct: 216 NIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIH 275

Query: 182 G-VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
             V  R      L + N+++D Y +  R++ A  +FD +P+++  S  +++ GY     V
Sbjct: 276 ARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASV 335

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             A  +F  M E  V    VS+ A++   +  G  E+  + F  ++ +S+ PT  HY 
Sbjct: 336 KAARLMFSNMMEKNV----VSWNALIAGYTQNGENEEAVRLFLLLKRESIWPT--HYT 387



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 32/256 (12%)

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
           F +S     +L +C R       + IHARII+   + ++F+ N L D Y KCG    A+ 
Sbjct: 16  FLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARK 75

Query: 115 VFN-------ISFR-------------------------DEVSYNILIVGYSQTSDCSES 142
           VF+        S+                          D+ S+N ++ G++Q     E+
Sbjct: 76  VFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEA 135

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
           L  F +M       +  SF  A+SACA L  +  G +IH +  +      +++ ++++D 
Sbjct: 136 LRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDM 195

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y++ G +  A + FD + V++  SWN+LI  Y   G    A+ +F  M ++GV  D ++ 
Sbjct: 196 YSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITL 255

Query: 263 IAILTACSHGGLVEKG 278
            ++++AC+    + +G
Sbjct: 256 ASVVSACASWSAIREG 271



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 69/142 (48%), Gaps = 4/142 (2%)

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
           D   F   + +C    +    + IH   I+    + +F+ N ++D Y + G  + A K+F
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
           D +P +++ S+N ++      G++D A N+F++M E     D  S+ A+++  +     E
Sbjct: 78  DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEP----DQCSWNAMVSGFAQHDRFE 133

Query: 277 KGKKYFDEMQADSVKPTEMHYA 298
           +  ++F +M ++     E  + 
Sbjct: 134 EALRFFVDMHSEDFVLNEYSFG 155


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  310 bits (794), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 154/417 (36%), Positives = 251/417 (60%), Gaps = 2/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +   + EK++VSW +M+A + Q+     AL   +EM     +P+++ 
Sbjct: 389 MYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIG 448

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L + +  CA  + +R G +IHARI   G + D+ + NAL ++YA+CG +  A + F  I 
Sbjct: 449 LASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIE 508

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +DE+++N L+ G++Q+    E+L +F  M   G+KH+V +F+ A+SA ANLA IKQGK+
Sbjct: 509 HKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQ 568

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+        V N+++  Y + G  + A   F  +  ++  SWNT+I      G 
Sbjct: 569 IHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGR 628

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++LF+ M+++G+  + V++I +L ACSH GLVE+G  YF  M  +  ++P   HYA
Sbjct: 629 GLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYA 688

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C++D+ GRAG ++ A K I+ +P+  DA +W  LL AC+++ N+E+G +AA+HL  L+P 
Sbjct: 689 CVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPH 748

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
               Y+LLSN YA   KW    +VR++M+ R  +K PG SW++ ++ V  F V DR+
Sbjct: 749 DSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRL 805



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 182/340 (53%), Gaps = 10/340 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K+     A  +F  ++ ++ VSW AM++ +AQN L  +AL L R+M      P    
Sbjct: 86  LYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYV 145

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L++VL +C +      G+ IHA+  + G   ++F+ NA+  +Y +CG   LA+ VF ++ 
Sbjct: 146 LSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMP 205

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++N LI G++Q      +L +F EM+  G+  D V+    ++ACA+L  +++G +
Sbjct: 206 HRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQ 265

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H    +  + +   +  S+LD Y + G ++ A  IF+     +   WN +++ +G + +
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMH 296
           +  +  LF  M+  G+  +  +Y  IL  C+    ++ G    +++ + SVK    ++M+
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG----EQIHSLSVKTGFESDMY 381

Query: 297 YA-CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            +  ++D+  + G +E A ++++ L  E D   W +++  
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLK-EKDVVSWTSMIAG 420



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 165/324 (50%), Gaps = 2/324 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F ++  ++ V++N +++  AQ      AL++  EM      P+ VT++++L ACA 
Sbjct: 197 AERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACAS 256

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNIL 129
              L+ G ++H+ + + G++ D  +  +L D+Y KCG +  A  +FN S R  V  +N++
Sbjct: 257 LGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           +V + Q +D ++S  LF +M+  G++ +  ++   +  C     I  G++IH ++++   
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            + ++V+  ++D Y++ G ++ A ++ + L  KD  SW ++I GY        A+  F+ 
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M++ G+  D +   + ++ C+    + +G +    +           +  +V+L  R G 
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGR 496

Query: 310 MEDAVKLIKNLPVEPDANIWGALL 333
           + +A    + +    D   W  L+
Sbjct: 497 IREAFSSFEEIE-HKDEITWNGLV 519



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 132/258 (51%), Gaps = 2/258 (0%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
           EIHA+ + +GL     + N L D+Y+K G +  A+ VF  +S RD VS+  ++ GY+Q  
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
              E+L L+ +M   G+          +S+C       QG+ IH    +    + +FV N
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
           +++  Y R G   LA ++F  +P +D+ ++NTLI G+   G  + A+ +FE M+  G+  
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317
           D V+  ++L AC+  G ++KG +    +    +    +    ++DL  + G +E A+ +I
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETAL-VI 301

Query: 318 KNLPVEPDANIWGALLGA 335
            N     +  +W  +L A
Sbjct: 302 FNSSDRTNVVLWNLMLVA 319


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  310 bits (794), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 154/417 (36%), Positives = 251/417 (60%), Gaps = 2/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +   + EK++VSW +M+A + Q+     AL   +EM     +P+++ 
Sbjct: 389 MYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIG 448

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L + +  CA  + +R G +IHARI   G + D+ + NAL ++YA+CG +  A + F  I 
Sbjct: 449 LASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIE 508

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +DE+++N L+ G++Q+    E+L +F  M   G+KH+V +F+ A+SA ANLA IKQGK+
Sbjct: 509 HKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQ 568

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+        V N+++  Y + G  + A   F  +  ++  SWNT+I      G 
Sbjct: 569 IHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGR 628

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++LF+ M+++G+  + V++I +L ACSH GLVE+G  YF  M  +  ++P   HYA
Sbjct: 629 GLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYA 688

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C++D+ GRAG ++ A K I+ +P+  DA +W  LL AC+++ N+E+G +AA+HL  L+P 
Sbjct: 689 CVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPH 748

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
               Y+LLSN YA   KW    +VR++M+ R  +K PG SW++ ++ V  F V DR+
Sbjct: 749 DSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRL 805



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 182/340 (53%), Gaps = 10/340 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K+     A  +F  ++ ++ VSW AM++ +AQN L  +AL L R+M      P    
Sbjct: 86  LYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYV 145

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L++VL +C +      G+ IHA+  + G   ++F+ NA+  +Y +CG   LA+ VF ++ 
Sbjct: 146 LSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMP 205

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++N LI G++Q      +L +F EM+  G+  D V+    ++ACA+L  +++G +
Sbjct: 206 HRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQ 265

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H    +  + +   +  S+LD Y + G ++ A  IF+     +   WN +++ +G + +
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMH 296
           +  +  LF  M+  G+  +  +Y  IL  C+    ++ G    +++ + SVK    ++M+
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG----EQIHSLSVKTGFESDMY 381

Query: 297 YA-CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            +  ++D+  + G +E A ++++ L  E D   W +++  
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLK-EKDVVSWTSMIAG 420



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 165/324 (50%), Gaps = 2/324 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F ++  ++ V++N +++  AQ      AL++  EM      P+ VT++++L ACA 
Sbjct: 197 AERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACAS 256

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNIL 129
              L+ G ++H+ + + G++ D  +  +L D+Y KCG +  A  +FN S R  V  +N++
Sbjct: 257 LGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           +V + Q +D ++S  LF +M+  G++ +  ++   +  C     I  G++IH ++++   
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            + ++V+  ++D Y++ G ++ A ++ + L  KD  SW ++I GY        A+  F+ 
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M++ G+  D +   + ++ C+    + +G +    +           +  +V+L  R G 
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGR 496

Query: 310 MEDAVKLIKNLPVEPDANIWGALL 333
           + +A    + +    D   W  L+
Sbjct: 497 IREAFSSFEEIE-HKDEITWNGLV 519



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 132/258 (51%), Gaps = 2/258 (0%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
           EIHA+ + +GL     + N L D+Y+K G +  A+ VF  +S RD VS+  ++ GY+Q  
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
              E+L L+ +M   G+          +S+C       QG+ IH    +    + +FV N
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
           +++  Y R G   LA ++F  +P +D+ ++NTLI G+   G  + A+ +FE M+  G+  
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317
           D V+  ++L AC+  G ++KG +    +    +    +    ++DL  + G +E A+ +I
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETAL-VI 301

Query: 318 KNLPVEPDANIWGALLGA 335
            N     +  +W  +L A
Sbjct: 302 FNSSDRTNVVLWNLMLVA 319


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  310 bits (794), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 157/451 (34%), Positives = 258/451 (57%), Gaps = 38/451 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELK-----ALQLVREMPIHNEF 55
           MY K +   EA  +F  +++++++SW+AM+A +AQ+  + K       QL+  M     F
Sbjct: 302 MYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVF 361

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           PN VT  ++L AC     L  G++IHA + + G   D  L  A+ +MYAKCG +  A+ V
Sbjct: 362 PNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQV 421

Query: 116 FN----------ISF----------------------RDEVSYNILIVGYSQTSDCSESL 143
           F+           SF                      R+ VS+N++I GY+Q  D  +  
Sbjct: 422 FSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVF 481

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203
            L S M+  G + D V+ +  + AC  LA +++GK +H   ++  L +   VA S++  Y
Sbjct: 482 ELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMY 541

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
           ++ G++  A  +FD +  +D+ +WN ++ GYG  G+   A++LF+ M ++ V  + ++  
Sbjct: 542 SKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLT 601

Query: 264 AILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
           A+++ACS  GLV++G++ F  MQ D  + P + HY CMVDLLGRAG +++A + I+++P 
Sbjct: 602 AVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPC 661

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382
           EPD ++W ALLGAC+ + NV+L   AA H+  L+P +   YI LSN+YA+AG+WD+++KV
Sbjct: 662 EPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKV 721

Query: 383 RELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           R +M  R  KK+ G S ++    +  FV  D
Sbjct: 722 RRVMDDRGLKKDRGESSIEIDGRIHTFVAED 752



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 209/460 (45%), Gaps = 75/460 (16%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K    + A  +FH + E+N+VSW A++   AQ+R   +A +L  +M      PN+VT
Sbjct: 201 MYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVT 260

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L +C     L  G+ IH+ I  +GL  D+ + NAL  MY KC  +  A+ +F+ +S
Sbjct: 261 FVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMS 320

Query: 120 FRDEVSYNILIVGYSQT-----SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
            RD +S++ +I GY+Q+         E   L   MR  G+  + V+FM  + AC    A+
Sbjct: 321 KRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGAL 380

Query: 175 KQGKEIH------GVTIRKHLHTHLF------------------VAN-------SILDFY 203
           +QG++IH      G  + + L T +F                  +AN       S L  Y
Sbjct: 381 EQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMY 440

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
            + G +  A K+F  +P ++  SWN +I GY   G++     L  +M+ +G   D V+ I
Sbjct: 441 IKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVI 500

Query: 264 AILTACSHGGLVEKGKKYFDE-----MQADSVKPTE---MHYAC---------------- 299
            IL AC     +E+GK    E     +++D+V  T    M+  C                
Sbjct: 501 TILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNR 560

Query: 300 -------MVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAA 349
                  M+   G+ G   +AV L K +    V P+     A++ AC   G V+ G    
Sbjct: 561 DTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIF 620

Query: 350 EHL---FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
             +   F + P+   +Y  + ++   AG+  EA +  + M
Sbjct: 621 RMMQEDFKMTPRK-QHYGCMVDLLGRAGRLQEAEEFIQSM 659



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 200/398 (50%), Gaps = 15/398 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K    A A  +F  +  +++V+W++M+A +A N    KA      M   N  PN +T 
Sbjct: 101 YSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITF 160

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++L AC     L  G++IH  +   G+  D+ +  AL  MY+KCG +++A  VF+ ++ 
Sbjct: 161 LSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTE 220

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+  +I   +Q    +E+  L+ +M   G+  + V+F+  +++C    A+ +G+ I
Sbjct: 221 RNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRI 280

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG-- 238
           H     + L T + VAN+++  Y +   +  A +IFD +  +D  SW+ +I GY   G  
Sbjct: 281 HSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYK 340

Query: 239 ---EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
               +D    L E MR +GV  + V++++IL AC+  G +E+G++   E+     +    
Sbjct: 341 DKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRS 400

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
               + ++  + G + +A ++   +    +   W + L      G++     +AE +F  
Sbjct: 401 LQTAIFNMYAKCGSIYEAEQVFSKMA-NKNVVAWTSFLSMYIKCGDLS----SAEKVFSE 455

Query: 356 KP-QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392
            P ++   + L+   YA+ G   +  KV EL+ S +A+
Sbjct: 456 MPTRNVVSWNLMIAGYAQNG---DIVKVFELLSSMKAE 490



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 151/296 (51%), Gaps = 2/296 (0%)

Query: 41  KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100
           +A+QL+  +       NS T   V+  CA+      GK +H ++   G+  D++L N+L 
Sbjct: 39  EAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLI 98

Query: 101 DMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
           + Y+K   +  A+ VF  ++ RD V+++ +I  Y+  +  +++   F  M    ++ + +
Sbjct: 99  NFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRI 158

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           +F+  + AC N + +++G++IH +     + T + VA +++  Y++ G I +A ++F  +
Sbjct: 159 TFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKM 218

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
             ++  SW  +I       +++ A  L+E M + G+  + V+++++L +C+    + +G+
Sbjct: 219 TERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGR 278

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +    +    ++   +    ++ +  +   +++A ++   +  + D   W A++  
Sbjct: 279 RIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMS-KRDVISWSAMIAG 333


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 159/417 (38%), Positives = 253/417 (60%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MYAK      A  +F  +  +N VSW+AM+  +  +    +AL+L  +M + +   P  V
Sbjct: 254 MYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPV 313

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL +VL ACA+   L  G+++H  II+ G   D+ L N L  MYAKCG ++ A   F+ +
Sbjct: 314 TLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEM 373

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + +D VS++ ++ G  Q  + + +LS+F  M+L G+  D+ + +G + AC++LAA++ G 
Sbjct: 374 NPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGF 433

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             HG  I +   T   + N+++D Y++ G+I  A ++F+ +   D  SWN +I+GYG+ G
Sbjct: 434 CSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHG 493

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A+ LF  +   G+  D +++I +L++CSH GLV +G+ +FD M  D S+ P   H 
Sbjct: 494 LGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHC 553

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVD+LGRAGL+++A   I+N+P EPD  IW ALL ACRI+ N+ELG   ++ +  L P
Sbjct: 554 ICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGP 613

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +  G ++LLSN+Y+ AG+WD+A+ +R   K    KK PGCSW++    V  FV  D+
Sbjct: 614 ESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQ 670



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 182/371 (49%), Gaps = 5/371 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK     EA  LF +++ +++V+WNAM+A  +   L   A+QL+ +M      PNS T+
Sbjct: 154 YAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTI 213

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
             VLP       L  GK +H   +R+  +  + +   L DMYAKC CL  A+ +F++   
Sbjct: 214 VGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGV 273

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAAIKQGKE 179
           R+EVS++ +I GY  +    E+L LF +M L   M    V+    + ACA L  + +G++
Sbjct: 274 RNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRK 333

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+      + + N++L  Y + G ID A + FD +  KDS S++ ++ G    G 
Sbjct: 334 LHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGN 393

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+++F  M+  G+  D  + + +L ACSH   ++ G      +         +    
Sbjct: 394 AAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNA 453

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG-NVE-LGAWAAEHLFMLKP 357
           ++D+  + G +  A ++   +    D   W A++    I+G  +E LG +       LKP
Sbjct: 454 LIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKP 512

Query: 358 QHCGYYILLSN 368
               +  LLS+
Sbjct: 513 DDITFICLLSS 523



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 192/442 (43%), Gaps = 67/442 (15%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y   ++   A  LF  I   +++ WN ++  +A N     A+ L   M      PN  T
Sbjct: 52  LYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYT 111

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
              VL AC+    +  G EIH+     GL  D+F+  AL D YAKCG L  AQ +F ++S
Sbjct: 112 YPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS 171

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++N +I G S    C +++ L  +M+  G+  +  + +G +       A+  GK 
Sbjct: 172 HRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKA 231

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  +R+     + V   +LD Y +   +  A KIFD + V++  SW+ +I GY     
Sbjct: 232 LHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDC 291

Query: 240 VDTAINLFEAM-REDGVGYDPVSYIAILTAC------SHG-------------------- 272
           +  A+ LF+ M  +D +   PV+  ++L AC      S G                    
Sbjct: 292 MKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGN 351

Query: 273 ---------GLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
                    G+++   ++FDEM   DSV  + +   C+ +  G A +     ++++   +
Sbjct: 352 TLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQN--GNAAVALSIFRMMQLSGI 409

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC--GYYIL------------LSN 368
           +PD      +L AC              HL  L+   C  GY I+            L +
Sbjct: 410 DPDLTTMLGVLPAC-------------SHLAALQHGFCSHGYLIVRGFATDTLICNALID 456

Query: 369 MYAEAGKWDEASKVRELMKSRE 390
           MY++ GK   A +V   M   +
Sbjct: 457 MYSKCGKISFAREVFNRMDRHD 478



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 167/383 (43%), Gaps = 45/383 (11%)

Query: 49  MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
           MP+  E  N+    ++L AC +   L   K+IH   ++   N D  + + LT +Y  C  
Sbjct: 1   MPLRFEVKNNYL--HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQ 58

Query: 109 LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
           + LA+ +F+ I     + +N +I  Y+       ++ L+  M  LG++ +  ++   + A
Sbjct: 59  VVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKA 118

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C+ L AI+ G EIH       L + +FV  +++DFY + G +  A ++F  +  +D  +W
Sbjct: 119 CSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAW 178

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-------- 279
           N +I G  + G  D A+ L   M+E+G+  +  + + +L        +  GK        
Sbjct: 179 NAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVR 238

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGR-----------------------AGLMEDAVKL 316
           + FD          +M+  C   L  R                       +  M++A++L
Sbjct: 239 RSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALEL 298

Query: 317 IKNL----PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN---- 368
              +     ++P     G++L AC    ++  G     H +++K       ILL N    
Sbjct: 299 FDQMILKDAMDPTPVTLGSVLRACAKLTDLSRG--RKLHCYIIKLGSV-LDILLGNTLLS 355

Query: 369 MYAEAGKWDEASKVRELMKSREA 391
           MYA+ G  D+A +  + M  +++
Sbjct: 356 MYAKCGVIDDAIRFFDEMNPKDS 378


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 254/416 (61%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A   F+ + EK++++WNA+++ ++Q   +++AL L  EM       N  T
Sbjct: 376 MYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTT 435

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L+ +L + A    +   +++H   ++ G + D+++ N+L D Y KC  +  A+ +F   +
Sbjct: 436 LSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECT 495

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VS+  +I  Y+Q     E+L LF EM+ + +K D       ++ACANL+A +QGK+
Sbjct: 496 IGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQ 555

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++      +F  NS+++ Y + G ID A + F  L  +   SW+ +I G    G 
Sbjct: 556 LHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGH 615

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYA 298
              A+ LF  M ++GV  + ++ +++L AC+H GLV + K YF+ M+     KP + HYA
Sbjct: 616 GRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYA 675

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLGRAG + +AV+L+  +P E +A++WGALLGA RI+ +VELG  AAE LF+L+P+
Sbjct: 676 CMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPE 735

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G ++LL+N+YA AGKW+  ++VR LM+  + KK PG SW++ +D+V  F+V DR
Sbjct: 736 KSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDR 791



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 193/437 (44%), Gaps = 87/437 (19%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     ++  LF  I E+N+VSWNA+ + + Q     +A+ L  EM +    PN  +
Sbjct: 201 MYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFS 260

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L++++ AC        GK IH  +I+ G ++D F  NAL DMYAK G L  A +VF  I 
Sbjct: 261 LSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK 320

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VS+N +I G        ++L L  +M+                           ++
Sbjct: 321 QPDIVSWNAVIAGCVLHEHHEQALELLGQMK---------------------------RQ 353

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++  + + LFV+  ++D Y++   ++ A   F+ LP KD  +WN +I GY    E
Sbjct: 354 LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWE 413

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTA------------------------------- 268
              A++LF  M ++G+G++  +   IL +                               
Sbjct: 414 DMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNS 473

Query: 269 -------CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IK 318
                  CSH   VE  ++ F+E     +    + +  M+    + G  E+A+KL   ++
Sbjct: 474 LIDSYGKCSH---VEDAERIFEECTIGDL----VSFTSMITAYAQYGQGEEALKLFLEMQ 526

Query: 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI------LLSNMYAE 372
           ++ ++PD  +  +LL AC      E G     H+ +LK    G+ +       L NMYA+
Sbjct: 527 DMELKPDRFVCSSLLNACANLSAFEQGKQL--HVHILK---YGFVLDIFAGNSLVNMYAK 581

Query: 373 AGKWDEASKVRELMKSR 389
            G  D+A +    +  R
Sbjct: 582 CGSIDDAGRAFSELTER 598



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 160/340 (47%), Gaps = 29/340 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K      A  L    +E ++VSW+A+++ +AQN L   AL    EM +     N  T
Sbjct: 100 LYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFT 159

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++VL AC+    LR GK++H  ++  G   D+F+ N L  MYAKC     ++ +F+ I 
Sbjct: 160 FSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIP 219

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+N L   Y Q   C E++ LF EM L G+K +  S    ++AC  L    +GK 
Sbjct: 220 ERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKI 279

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  I+       F AN+++D Y + G +  A  +F+ +   D  SWN +I G  +   
Sbjct: 280 IHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEH 339

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ L   M+                   H  L++       +M++D           
Sbjct: 340 HEQALELLGQMKRQ----------------LHSSLMKM------DMESDLFVSVG----- 372

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
           +VD+  +  L+EDA ++  NL  E D   W A++     Y
Sbjct: 373 LVDMYSKCDLLEDA-RMAFNLLPEKDLIAWNAIISGYSQY 411



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 171/354 (48%), Gaps = 30/354 (8%)

Query: 53  NEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
           N  P SV+ + +L  C     LRPG +IHA I + GL+ D  + N L ++Y+KC     A
Sbjct: 51  NFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYA 110

Query: 113 QNVFNISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
           + + + S   D VS++ LI GY+Q      +L  F EM LLG+K +  +F   + AC+ +
Sbjct: 111 RKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
             ++ GK++HGV +       +FVAN+++  Y +      + ++FD +P ++  SWN L 
Sbjct: 171 KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALF 230

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKK 280
             Y        A+ LF  M   G+  +  S  +++ AC+           HG L++ G  
Sbjct: 231 SCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYD 290

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           + D   A++          +VD+  + G + DA+ + + +  +PD   W A++  C ++ 
Sbjct: 291 W-DPFSANA----------LVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHE 338

Query: 341 NVELGAWAAEHLFMLKPQHCGYYILL---SNMYAEAGKWDEASKVRELMKSREA 391
           + E    A E L  +K Q     + +   S+++   G  D  SK   L  +R A
Sbjct: 339 HHE---QALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMA 389


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 153/417 (36%), Positives = 258/417 (61%), Gaps = 2/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +   +  K++VSW +M+A + Q+    +AL+  ++M +   +P+++ 
Sbjct: 389 MYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIG 448

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L + + ACA    +R G++IH+R+   G + D+ + NAL ++YA+CG    A ++F  I 
Sbjct: 449 LASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIE 508

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D++++N ++ G++Q+    E+L +F +M   G+K++V +F+ +ISA ANLA IKQGK+
Sbjct: 509 HKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQ 568

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+    +   VAN+++  Y + G I+ A   F  +  ++  SWNT+I      G 
Sbjct: 569 IHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGW 628

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++LF+ M+++G+  + V++I +L ACSH GLVE+G  YF  M ++  + P   HYA
Sbjct: 629 GLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYA 688

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VD+LGRAG ++ A K ++ +PV  +A +W  LL ACR++ N+E+G  AA++L  L+P 
Sbjct: 689 CVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPH 748

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
               Y+LLSN YA  GKW     VR++MK R  +K PG SW++ ++ V  F V DR+
Sbjct: 749 DSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRL 805



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 180/340 (52%), Gaps = 10/340 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK      A  +F  ++ ++ VSW AM++ +A+N L  +A+ L  +M      P    
Sbjct: 86  LYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYV 145

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L++VL AC +      G+ +HA++ ++G   +  + NAL  +Y + G L+LA+ VF+ + 
Sbjct: 146 LSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMP 205

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           + D V++N LI  ++Q  +   +L +F EMRL G   D V+    ++ACA++  + +GK+
Sbjct: 206 YCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQ 265

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++  +     +  S+LD Y + G I  A +IF      +   WN +++ YG + +
Sbjct: 266 LHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISD 325

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMH 296
           +  + +LF  M   GV  +  +Y  +L  C++ G +  G    +++   S+K    ++M+
Sbjct: 326 LAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLG----EQIHLLSIKTGFESDMY 381

Query: 297 YA-CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            +  ++D+  + G ++ A ++++ L  + D   W +++  
Sbjct: 382 VSGVLIDMYSKYGWLDKARRILEVLEAK-DVVSWTSMIAG 420



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 167/334 (50%), Gaps = 2/334 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y +    + A  +F  +   + V++N +++  AQ      AL++  EM +    P+ VT
Sbjct: 187 LYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVT 246

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + ++L ACA    L  GK++H+ +++ G++ D  +  +L D+Y KCG +  A  +F    
Sbjct: 247 IASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGD 306

Query: 121 RDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           R  V  +N+++V Y Q SD ++S  LF +M   G++ +  ++   +  C     I  G++
Sbjct: 307 RTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQ 366

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH ++I+    + ++V+  ++D Y++ G +D A +I + L  KD  SW ++I GY     
Sbjct: 367 IHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEF 426

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+  F+ M+  G+  D +   + ++AC+    + +G++    +           +  
Sbjct: 427 CKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNA 486

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +V+L  R G  ++A  L + +    D   W  ++
Sbjct: 487 LVNLYARCGRSKEAFSLFEAIE-HKDKITWNGMV 519



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 163/349 (46%), Gaps = 40/349 (11%)

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSD 138
           IHA+ I  GL  D    N L D+YAK G +  A+ VF  +S RD VS+  ++ GY++   
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
             E++ L+ +M   G+          +SAC   A  +QG+ +H    ++   +   V N+
Sbjct: 124 GEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNA 183

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
           ++  Y R G + LA ++F  +P  D  ++NTLI  +   G  ++A+ +FE MR  G   D
Sbjct: 184 LIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPD 243

Query: 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
            V+  ++L AC+  G + KGK+    +    + P  +    ++DL  + G++ +A+++ K
Sbjct: 244 CVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFK 303

Query: 319 N----------------------------------LPVEPDANIWGALLGACRIYGNVEL 344
           +                                    V P+   +  LL  C   G + L
Sbjct: 304 SGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINL 363

Query: 345 GAWAAEHLFMLKPQ-HCGYYI--LLSNMYAEAGKWDEASKVRELMKSRE 390
           G     HL  +K       Y+  +L +MY++ G  D+A ++ E++++++
Sbjct: 364 GEQI--HLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKD 410


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 254/416 (61%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A   F+ + EK++++WNA+++ ++Q   +++AL L  EM       N  T
Sbjct: 403 MYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTT 462

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L+ +L + A    +   +++H   ++ G + D+++ N+L D Y KC  +  A+ +F   +
Sbjct: 463 LSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECT 522

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VS+  +I  Y+Q     E+L LF EM+ + +K D       ++ACANL+A +QGK+
Sbjct: 523 IGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQ 582

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++      +F  NS+++ Y + G ID A + F  L  +   SW+ +I G    G 
Sbjct: 583 LHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGH 642

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYA 298
              A+ LF  M ++GV  + ++ +++L AC+H GLV + K YF+ M+     KP + HYA
Sbjct: 643 GRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYA 702

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLGRAG + +AV+L+  +P E +A++WGALLGA RI+ +VELG  AAE LF+L+P+
Sbjct: 703 CMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPE 762

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G ++LL+N+YA AGKW+  ++VR LM+  + KK PG SW++ +D+V  F+V DR
Sbjct: 763 KSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDR 818



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 121/437 (27%), Positives = 206/437 (47%), Gaps = 60/437 (13%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     ++  LF  I E+N+VSWNA+ + + Q     +A+ L  EM +    PN  +
Sbjct: 201 MYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFS 260

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L++++ AC        GK IH  +I+ G ++D F  NAL DMYAK G L  A +VF  I 
Sbjct: 261 LSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK 320

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VS+N +I G        ++L L  +M+  G+  ++ +   A+ ACA +   + G++
Sbjct: 321 QPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQ 380

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++  + + LFV+  ++D Y++   ++ A   F+ LP KD  +WN +I GY    E
Sbjct: 381 LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWE 440

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTA------------------------------- 268
              A++LF  M ++G+G++  +   IL +                               
Sbjct: 441 DMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNS 500

Query: 269 -------CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IK 318
                  CSH   VE  ++ F+E     +    + +  M+    + G  E+A+KL   ++
Sbjct: 501 LIDSYGKCSH---VEDAERIFEECTIGDL----VSFTSMITAYAQYGQGEEALKLFLEMQ 553

Query: 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI------LLSNMYAE 372
           ++ ++PD  +  +LL AC      E G     H+ +LK    G+ +       L NMYA+
Sbjct: 554 DMELKPDRFVCSSLLNACANLSAFEQGKQL--HVHILKY---GFVLDIFAGNSLVNMYAK 608

Query: 373 AGKWDEASKVRELMKSR 389
            G  D+A +    +  R
Sbjct: 609 CGSIDDAGRAFSELTER 625



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 169/340 (49%), Gaps = 2/340 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K      A  L    +E ++VSW+A+++ +AQN L   AL    EM +     N  T
Sbjct: 100 LYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFT 159

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++VL AC+    LR GK++H  ++  G   D+F+ N L  MYAKC     ++ +F+ I 
Sbjct: 160 FSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIP 219

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+N L   Y Q   C E++ LF EM L G+K +  S    ++AC  L    +GK 
Sbjct: 220 ERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKI 279

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  I+       F AN+++D Y + G +  A  +F+ +   D  SWN +I G  +   
Sbjct: 280 IHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEH 339

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ L   M+  G+  +  +  + L AC+  GL E G++    +    ++        
Sbjct: 340 HEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVG 399

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
           +VD+  +  L+EDA ++  NL  E D   W A++     Y
Sbjct: 400 LVDMYSKCDLLEDA-RMAFNLLPEKDLIAWNAIISGYSQY 438



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 161/326 (49%), Gaps = 27/326 (8%)

Query: 30  VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
           V  F+Q+      L L+ +    N  P SV+ + +L  C     LRPG +IHA I + GL
Sbjct: 31  VPQFSQDPQTTAILNLIDK---GNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGL 87

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVGYSQTSDCSESLSLFSE 148
           + D  + N L ++Y+KC     A+ + + S   D VS++ LI GY+Q      +L  F E
Sbjct: 88  SDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHE 147

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M LLG+K +  +F   + AC+ +  ++ GK++HGV +       +FVAN+++  Y +   
Sbjct: 148 MHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDE 207

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
              + ++FD +P ++  SWN L   Y  +     A+ LF  M   G+  +  S  +++ A
Sbjct: 208 FLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNA 267

Query: 269 CS-----------HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317
           C+           HG L++ G  + D   A++          +VD+  + G + DA+ + 
Sbjct: 268 CTGLRDSSRGKIIHGYLIKLGYDW-DPFSANA----------LVDMYAKVGDLADAISVF 316

Query: 318 KNLPVEPDANIWGALLGACRIYGNVE 343
           + +  +PD   W A++  C ++ + E
Sbjct: 317 EKIK-QPDIVSWNAVIAGCVLHEHHE 341


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 158/421 (37%), Positives = 259/421 (61%), Gaps = 12/421 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA     A A  +F  I  K++VSWNAM++ +A+     +AL+L +EM   N  P+  T+
Sbjct: 164 YASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTM 223

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            +V+ ACA+   +  G+++H+ I   G   +L + NAL D+Y KCG +  A  +F  +S+
Sbjct: 224 VSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSY 283

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D +S+N LI GY+  +   E+L LF EM   G   + V+ +  + ACA+L AI+ G+ I
Sbjct: 284 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWI 343

Query: 181 HGVTIRKHLHTHLFVAN------SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           H V I K L     VAN      S++D Y + G I+ A ++FD +  +  +SWN +I G+
Sbjct: 344 H-VYINKRLKG---VANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGF 399

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
            M G  + A ++F  MR++ +  D ++++ +L+ACSH G+++ G+  F  M+ D  + P 
Sbjct: 400 AMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPK 459

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY CM+DLLG +GL ++A ++I  + +EPD  IW +LL AC+++GNVELG   A++L 
Sbjct: 460 LEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLI 519

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            ++P++ G Y+LLSN+YA AG+W+E +K+R L+  +  KK PGCS ++    V +F++ D
Sbjct: 520 KIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGD 579

Query: 414 R 414
           +
Sbjct: 580 K 580



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 173/361 (47%), Gaps = 35/361 (9%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  I E N++ WN M    A +   + AL L   M      PN  T   +L +CA+   
Sbjct: 44  VFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKA 103

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
            R G++IH  +++ G + DL++  +L  MY + G L  A+ VF+                
Sbjct: 104 FREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITG 163

Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
                           I  +D VS+N +I GY++T +  E+L LF EM    ++ D  + 
Sbjct: 164 YASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTM 223

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           +  +SACA  A+I+ G+++H         ++L + N+++D Y + G ++ A  +F+ L  
Sbjct: 224 VSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSY 283

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-- 279
           KD  SWNTLI GY  +     A+ LF+ M   G   + V+ ++IL AC+H G +E G+  
Sbjct: 284 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWI 343

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
             +   +   V     H   ++D+  + G +E A ++  ++ +    + W A++    ++
Sbjct: 344 HVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMH 402

Query: 340 G 340
           G
Sbjct: 403 G 403



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 160/385 (41%), Gaps = 78/385 (20%)

Query: 80  IHARIIRKGLNFDLFLTNALTD---MYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQ 135
           IHA++I+ GL+   +  + L +   +      L  A +VF  I   + + +N +  G++ 
Sbjct: 6   IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 65

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
           +SD   +L L+  M  LG+  +  +F   + +CA   A ++G++IHG  ++      L+V
Sbjct: 66  SSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYV 125

Query: 196 ANSILDFYTRSGRIDLANKIFDC-------------------------------LPVKDS 224
             S++  Y ++GR++ A K+FD                                +P+KD 
Sbjct: 126 HTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDV 185

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            SWN +I GY   G    A+ LF+ M +  V  D  + +++++AC+    +E G++    
Sbjct: 186 VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSW 245

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG---------- 334
           +              ++DL  + G +E A  L + L  + D   W  L+G          
Sbjct: 246 IDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVISWNTLIGGYTHMNLYKE 304

Query: 335 -------------------------ACRIYGNVELGAWAAEHLFMLK-----PQHCGYYI 364
                                    AC   G +E+G W   H+++ K          +  
Sbjct: 305 ALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWI--HVYINKRLKGVANASSHRT 362

Query: 365 LLSNMYAEAGKWDEASKVRELMKSR 389
            L +MYA+ G  + A +V + + +R
Sbjct: 363 SLIDMYAKCGDIEAAQQVFDSILNR 387


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 155/417 (37%), Positives = 250/417 (59%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSV 59
           MYAK  +   A  +FH +  +N V+W+A++  F       +A  L ++M +    F ++ 
Sbjct: 249 MYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSAT 308

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           ++ + L  CA    L  G ++HA I + G++ DL  +N+L  MYAK G +N A   F+ I
Sbjct: 309 SVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEI 368

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + +D +SY  L+ G  Q     E+  +F +M+   M+ D+ + +  I AC++LAA++ GK
Sbjct: 369 AVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGK 428

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             HG  I + L     + NS++D Y + G+IDL+ ++FD +P +D  SWNT+I GYG+ G
Sbjct: 429 CSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHG 488

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A  LF  M+  G   D V++I ++ ACSH GLV +GK +FD M     + P   HY
Sbjct: 489 LGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHY 548

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLL R GL+++A + I+++P++ D  +WGALLGACRI+ N++LG   +  +  L P
Sbjct: 549 ICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGP 608

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +  G ++LLSN+++ AG++DEA++VR + K +  KK+PG SW++    +  FV  D+
Sbjct: 609 EGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQ 665



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 205/433 (47%), Gaps = 52/433 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +Y + +R   A  +F  +  +++V+WNAM+A +A + +   A+  + +M  H    PN+ 
Sbjct: 144 LYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNAS 203

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFD---LFLTNALTDMYAKCGCLNLAQNVF 116
           TL ++LP  A+   L  G  IHA  +R  L  +   + +  AL DMYAKC  L  A  VF
Sbjct: 204 TLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVF 263

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-DVVSFMGAISACANLAAI 174
           + +  R++V+++ LI G+      +E+ +LF +M + G+      S   A+  CA+LA +
Sbjct: 264 HGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADL 323

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G ++H +  +  +H  L  +NS+L  Y ++G I+ A   FD + VKD+ S+  L+ G 
Sbjct: 324 HMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGC 383

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK--------------- 279
              G+ + A  +F+ M+   +  D  + ++++ ACSH   ++ GK               
Sbjct: 384 VQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALET 443

Query: 280 --------------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL--- 316
                               + FD+M A  V    + +  M+   G  GL ++A  L   
Sbjct: 444 SICNSLIDMYAKCGKIDLSRQVFDKMPARDV----VSWNTMIAGYGIHGLGKEATTLFLG 499

Query: 317 IKNLPVEPDANIWGALLGACRIYGNVELGA-W--AAEHLFMLKPQHCGYYILLSNMYAEA 373
           +KN    PD   +  L+ AC   G V  G  W     H + + P+   +YI + ++ A  
Sbjct: 500 MKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPR-MEHYICMVDLLARG 558

Query: 374 GKWDEASKVRELM 386
           G  DEA +  + M
Sbjct: 559 GLLDEAYQFIQSM 571



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 186/424 (43%), Gaps = 43/424 (10%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           A A  +F  I   +  ++NA++  ++       A+ L R M      PN  T   VL AC
Sbjct: 51  ALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKAC 110

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYN 127
           +    LR G+ IHA     GL+ DLF++ AL D+Y +C     A+NVF  +  RD V++N
Sbjct: 111 SALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWN 170

Query: 128 ILIVGYSQTSDCSESLSLFSEMR-LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
            ++ GY+       +++   +M+   G++ +  + +  +   A   A+ QG  IH   +R
Sbjct: 171 AMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLR 230

Query: 187 KHLHT---HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
             L      + +  ++LD Y +  ++  A ++F  +PV++  +W+ LI G+ +   +  A
Sbjct: 231 ACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEA 290

Query: 244 INLFEAMREDGVGYDPVSYIA-ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
            NLF+ M  +G+ +   + +A  L  C+    +  G +    +    +         ++ 
Sbjct: 291 FNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLS 350

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAW--------------- 347
           +  +AGL+ +A      + V+ D   +GALL  C   G  E                   
Sbjct: 351 MYAKAGLINEATMFFDEIAVK-DTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIA 409

Query: 348 -------AAEHLFMLKPQHC--GYYIL------------LSNMYAEAGKWDEASKVRELM 386
                  A  HL  L+   C  G  I+            L +MYA+ GK D + +V + M
Sbjct: 410 TMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKM 469

Query: 387 KSRE 390
            +R+
Sbjct: 470 PARD 473



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 12/237 (5%)

Query: 107 GCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI 165
           G L LA+ VF+ I   D  +YN LI  YS       ++ L+  M    +  +  +F   +
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
            AC+ L  ++ G+ IH       LHT LFV+ +++D Y R  R   A  +F  +P++D  
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP-----VSYIAILTACSHGGLVEKGKK 280
           +WN ++ GY   G    AI     M++ G G  P     VS + +L    HG L +    
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHG-GLRPNASTLVSLLPLLA--QHGALFQGTSI 224

Query: 281 YFDEMQA--DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +   ++A  +  +   +    ++D+  +   +  A ++   +PV  D   W AL+G 
Sbjct: 225 HAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVT-WSALIGG 280


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 154/414 (37%), Positives = 253/414 (61%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     EA  +F  + +K++VSW +++A +AQN +  +A+ L+  M      PN  T
Sbjct: 95  LYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFT 154

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L A         G +IHA  ++   + D+++ +AL DMYA+CG +++A  VF+ + 
Sbjct: 155 FASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLD 214

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N LI G+++  D   +L +F+EM+  G +    ++    S  A + A++QGK 
Sbjct: 215 SKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKW 274

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++       FV N++LD Y +SG +  A K+F+ +  KD  +WN+++  +   G 
Sbjct: 275 VHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGL 334

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A++ FE MR+ G+  + ++++ ILTACSHGGLV++GK YFD ++  +++P   HY  
Sbjct: 335 GKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVT 394

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLLGRAGL+  A+  I  +P+EP A +WGALL ACR++ N ++G +AA+H+F L P  
Sbjct: 395 VVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDD 454

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G  +LL N+YA  G WD A++VR++MK+   KK P CSWV+  + V  FV ND
Sbjct: 455 SGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVAND 508



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 144/298 (48%), Gaps = 5/298 (1%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P        + ACA+   L   ++IH  +       D FL N+L  +Y KCG +  A  V
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKV 108

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ +  +D VS+  LI GY+Q    +E++ L   M     K +  +F   + A    A  
Sbjct: 109 FDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS 168

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G +IH + ++   H  ++V +++LD Y R G++D+A  +FD L  K+  SWN LI G+
Sbjct: 169 GIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G+ +TA+ +F  M+ +G      +Y +I +  +  G +E+GK     M     K T 
Sbjct: 229 ARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTA 288

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
                M+D+  ++G M DA K+ + + +  D   W ++L A   YG   LG  A  H 
Sbjct: 289 FVGNTMLDMYAKSGSMIDARKVFERV-LNKDLVTWNSMLTAFAQYG---LGKEAVSHF 342



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 98/234 (41%), Gaps = 17/234 (7%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           I+ACA    +   ++IHG           F+ NS++  Y + G +  A+K+FD +  KD 
Sbjct: 58  ITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDM 117

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            SW +LI GY        AI L   M +     +  ++ ++L A   G   + G     +
Sbjct: 118 VSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAA--GAYADSGIG--GQ 173

Query: 285 MQADSVKPTEMHY-----ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
           + A +VK  + H      + ++D+  R G M+ A  +   L  +   + W AL+      
Sbjct: 174 IHALAVK-CDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVS-WNALISGFARK 231

Query: 340 GNVE--LGAWAAEHLFMLKPQHCGYYILLSNMYA----EAGKWDEASKVRELMK 387
           G+ E  L  +A       +  H  Y  + S +      E GKW  A  V+   K
Sbjct: 232 GDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQK 285


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  309 bits (792), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 157/422 (37%), Positives = 258/422 (61%), Gaps = 12/422 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA +     A  +F  I  K++VSWNA+++ +A+     +AL+L +EM   N  P+  T+
Sbjct: 179 YASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTM 238

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL ACA+   +  G+++H+ I   G   +L + NAL D+Y KCG +  A  +F  +S+
Sbjct: 239 VTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSY 298

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D +S+N LI GY+  +   E+L LF EM   G   + V+ +  + ACA+L AI  G+ I
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWI 358

Query: 181 HGVTIRKHLHTHLFVAN------SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           H V I K L     V+N      S++D Y + G I+ A ++FD +  +  +SWN +I G+
Sbjct: 359 H-VYIDKRLKG---VSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGF 414

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
            M G  + A ++F  MR+DG+  D ++++ +L+ACSH G+++ G+  F  M  D  + P 
Sbjct: 415 AMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPK 474

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY CM+DLLG +GL ++A ++I ++ ++PD  IW +LL AC+++GNVELG   A++L 
Sbjct: 475 LEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLI 534

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            ++P++ G Y+LLSN+YA AG+W+E +K R L+  +  KK PGCS ++    V +F++ D
Sbjct: 535 KIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGD 594

Query: 414 RM 415
           ++
Sbjct: 595 KL 596



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 178/362 (49%), Gaps = 37/362 (10%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F +I E N++ WN M    A +   + AL L   M      PNS T   +L ACA+   
Sbjct: 59  VFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKA 118

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
            R G++IH  +++ G + DL++  +L  MY K G    A+ VF+                
Sbjct: 119 FREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKG 178

Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
                           I  +D VS+N LI GY++T +  E+L LF EM    +K D  + 
Sbjct: 179 YASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTM 238

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           +  +SACA  A+I+ G+++H         ++L + N+++D Y + G ++ A+ +F+ L  
Sbjct: 239 VTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSY 298

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-- 279
           KD  SWNTLI GY  +     A+ LF+ M   G   + V+ ++IL AC+H G ++ G+  
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWI 358

Query: 280 -KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
             Y D+       P+ +  + ++D+  + G +E A ++  ++ +    + W A++    +
Sbjct: 359 HVYIDKRLKGVSNPSSLRTS-LIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAM 416

Query: 339 YG 340
           +G
Sbjct: 417 HG 418



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 134/264 (50%), Gaps = 9/264 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      AS LF  ++ K+++SWN ++  +    L  +AL L +EM    E PN VT
Sbjct: 279 LYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVT 338

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR--KGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
           + ++LPACA    +  G+ IH  I +  KG++    L  +L DMYAKCG +  AQ VF+ 
Sbjct: 339 MLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDS 398

Query: 119 SF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              R   S+N +I G++     + +  +FS MR  G++ D ++F+G +SAC++   +  G
Sbjct: 399 MLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLG 458

Query: 178 KEI-HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYG 235
           + I   +T    +   L     ++D    SG    A ++ + + +  D   W +L+    
Sbjct: 459 RHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACK 518

Query: 236 MLGEVDTAINLFEAMREDGVGYDP 259
           M G V+    L E+  ++ +  +P
Sbjct: 519 MHGNVE----LGESFAQNLIKIEP 538



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 132/297 (44%), Gaps = 36/297 (12%)

Query: 74  LRPGKEIHARIIRKGL---NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
           L+  + IHA++I+ GL   N+ L      + +      L  A +VF+ I   + + +N +
Sbjct: 15  LQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTM 74

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
             G++ +SD   +L L+  M  LG+  +  +F   + ACA   A ++G++IHG  ++   
Sbjct: 75  FRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGC 134

Query: 190 HTHLFVANSILDFYTRSGR-------------------------------IDLANKIFDC 218
              L+V  S++  Y ++GR                               I  A K+FD 
Sbjct: 135 DLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDE 194

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +PVKD  SWN LI GY   G    A+ LF+ M +  V  D  + + +L+AC+    +E G
Sbjct: 195 IPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELG 254

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++    +              ++DL  + G +E A  L + L  + D   W  L+G 
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYK-DVISWNTLIGG 310



 Score = 42.0 bits (97), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 99/230 (43%), Gaps = 10/230 (4%)

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID---LANKIFDCLP 220
           ++S   N   ++  + IH   I+  LH   +  + +++F   S   D    A  +FD + 
Sbjct: 5   SLSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQ 64

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
             +   WNT+  G+ +  +  +A+ L+  M   G+  +  ++  +L AC+      +G++
Sbjct: 65  EPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQ 124

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
               +           +  ++ +  + G  EDA K+        D   + AL+      G
Sbjct: 125 IHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQ-SSHRDVVSYTALIKGYASNG 183

Query: 341 NVELGAWAAEHLFMLKP-QHCGYYILLSNMYAEAGKWDEASKV-RELMKS 388
            +     +A+ +F   P +    +  L + YAE G + EA ++ +E+MK+
Sbjct: 184 YIX----SAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKT 229


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  309 bits (792), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 157/416 (37%), Positives = 259/416 (62%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+  S     + +F N+ +KN+VSW AM+ ++ +     K   L +EM +    P+   
Sbjct: 129 MYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFA 188

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T+ L A A    L+ GK +H   IR G+   L + NAL +MY KCG +  A+ +F+ ++
Sbjct: 189 ITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVT 248

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+N LI GYS+++  +E+ +LF+EM LL ++ + V+    + A A+L+++++G+E
Sbjct: 249 KKDTISWNTLIGGYSRSNLANEAFTLFNEM-LLQLRPNAVTMACILPAAASLSSLERGRE 307

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +R+      FVAN+++D Y + G + LA ++FD L  K+  SW  +I GYGM G 
Sbjct: 308 MHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGR 367

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AI LFE M+  G+  D  S+ AIL ACSH GL ++G ++F+ M+ +  ++P   HYA
Sbjct: 368 GRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYA 427

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLL   G +++A + I+ +P+EPD++IW +LL  CRI+ NV+L    AE +F L+P+
Sbjct: 428 CMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPE 487

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + GYY+LL+N+YAEA +W+   K++  +  R  ++N GCSW++ R +   F   +R
Sbjct: 488 NTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENR 543



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/429 (29%), Positives = 201/429 (46%), Gaps = 52/429 (12%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAKS+R  +A  +F  + +++I+SWN+++   A N L  KA++L   M +  +  +S TL
Sbjct: 29  YAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELDSTTL 88

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            +V+PAC + H+   G  +H   +R GL  +  L NAL DMY+ C        +F N+  
Sbjct: 89  LSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQ 148

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ VS+  +I  Y++     +   LF EM L G++ DV +   A+ A A   ++K GK +
Sbjct: 149 KNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSV 208

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  IR  +   L VAN++++ Y + G ++ A  IFD +  KD+ SWNTLI GY      
Sbjct: 209 HGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLA 268

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP-------- 292
           + A  LF  M    +  + V+   IL A +    +E+G+    EM A +V+         
Sbjct: 269 NEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGR----EMHAYAVRRGYLEDNFV 323

Query: 293 ----TEMHYACMVDLLGRA-----------------------GLMEDAVKLIKNLP---V 322
                +M+  C   LL R                        G   DA+ L + +    +
Sbjct: 324 ANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGI 383

Query: 323 EPDANIWGALLGACRIYGNVELG-----AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWD 377
           +PDA  + A+L AC   G  + G     A   EH    K +H   Y  + ++    G   
Sbjct: 384 QPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKH---YACMVDLLCHTGNLK 440

Query: 378 EASKVRELM 386
           EA +  E M
Sbjct: 441 EAYEFIETM 449



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 115/260 (44%), Gaps = 2/260 (0%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           G  +H  +++ G      + NAL   YAK   +  A  VF+ +  RD +S+N +I G + 
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
                +++ LF  M L G + D  + +  + AC        G  +HG ++R  L +   +
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            N++LD Y+        NKIF  +  K+  SW  +I  Y   G  D    LF+ M  +G+
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
             D  +  + L A +    ++ GK        + ++        ++++  + G ME+A +
Sbjct: 183 RPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEA-R 241

Query: 316 LIKNLPVEPDANIWGALLGA 335
            I +   + D   W  L+G 
Sbjct: 242 FIFDHVTKKDTISWNTLIGG 261


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  309 bits (792), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 158/421 (37%), Positives = 258/421 (61%), Gaps = 12/421 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA     A A  +F  I  K++VSWNAM++ +A+     +AL+L +EM   N  P+  T+
Sbjct: 179 YASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTM 238

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            +V+ ACA+   +  G+++H+ I   G   +L + NAL D+Y KCG +  A  +F  +S+
Sbjct: 239 VSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSY 298

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D +S+N LI GY+  +   E+L LF EM   G   + V+ +  + ACA+L AI+ G+ I
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWI 358

Query: 181 HGVTIRKHLHTHLFVAN------SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           H V I K L     VAN      S++D Y + G I+ A ++FD +  +  +SWN +I G+
Sbjct: 359 H-VYINKRLKG---VANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGF 414

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
            M G  + A ++F  MR++ +  D ++++ +L+ACSH G+++ G+  F  M+ D  + P 
Sbjct: 415 AMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPK 474

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY CM+DLLG +GL ++A ++I  + +EPD  IW +LL AC++Y NVELG   A++L 
Sbjct: 475 LEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLI 534

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            ++P++ G Y+LLSN+YA AG+W+E +K+R L+  +  KK PGCS ++    V +F++ D
Sbjct: 535 KIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGD 594

Query: 414 R 414
           +
Sbjct: 595 K 595



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 173/361 (47%), Gaps = 35/361 (9%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  I E N++ WN M    A +   + AL L   M      PN  T   +L +CA+   
Sbjct: 59  VFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKA 118

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
            R G++IH  +++ G + DL++  +L  MY + G L  A+ VF+                
Sbjct: 119 FREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITG 178

Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
                           I  +D VS+N +I GY++T +  E+L LF EM    ++ D  + 
Sbjct: 179 YASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTM 238

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           +  +SACA  A+I+ G+++H         ++L + N+++D Y + G ++ A  +F+ L  
Sbjct: 239 VSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSY 298

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-- 279
           KD  SWNTLI GY  +     A+ LF+ M   G   + V+ ++IL AC+H G +E G+  
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWI 358

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
             +   +   V     H   ++D+  + G +E A ++  ++ +    + W A++    ++
Sbjct: 359 HVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMH 417

Query: 340 G 340
           G
Sbjct: 418 G 418



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 163/391 (41%), Gaps = 78/391 (19%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTD---MYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
           L+  + IHA++I+ GL+   +  + L +   +      L  A +VF  I   + + +N +
Sbjct: 15  LQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTM 74

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
             G++ +SD   +L L+  M  LG+  +  +F   + +CA   A ++G++IHG  ++   
Sbjct: 75  FRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGY 134

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDC------------------------------- 218
              L+V  S++  Y ++GR++ A K+FD                                
Sbjct: 135 DLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDE 194

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P+KD  SWN +I GY   G    A+ LF+ M +  V  D  + +++++AC+    +E G
Sbjct: 195 IPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELG 254

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG---- 334
           ++    +              ++DL  + G +E A  L + L  + D   W  L+G    
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVISWNTLIGGYTH 313

Query: 335 -------------------------------ACRIYGNVELGAWAAEHLFMLK-----PQ 358
                                          AC   G +E+G W   H+++ K       
Sbjct: 314 MNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWI--HVYINKRLKGVAN 371

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
              +   L +MYA+ G  + A +V + + +R
Sbjct: 372 ASSHRTSLIDMYAKCGDIEAAQQVFDSILNR 402


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  309 bits (792), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 168/453 (37%), Positives = 252/453 (55%), Gaps = 40/453 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K      A  +F  + EKN+VSWN ++  + QN   ++AL+    M      P+ VTL
Sbjct: 201 YSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTL 260

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
            +V+ ACA     + G +IHAR+++      DL L NAL DMYAKCG +N A+ VF+   
Sbjct: 261 ASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMP 320

Query: 118 -----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                        I  +D VS+N LI GY+Q  +  E+L LF  
Sbjct: 321 VRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRM 380

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIH------GVTIRKHLHTHLFVANSILDF 202
           ++   +     +F   ++A ANLA ++ G++ H      G   +      +FV NS++D 
Sbjct: 381 LKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDM 440

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y + G ++   ++F+ +  KD  SWNT+I+GY   G    A+ LF+ M E G   D V+ 
Sbjct: 441 YMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTM 500

Query: 263 IAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
           I  L ACSH GLVE+G++YF  M  +  + P + HY CMVDLLGRAG +E+A  LI+++P
Sbjct: 501 IGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMP 560

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381
            +PDA +W +LL AC+++ N+ LG + AE +F + P   G Y+LL+NMY+E G+W +A  
Sbjct: 561 KQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVS 620

Query: 382 VRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           VR+LM+ R   K PGCSW+  +  V  F+V D+
Sbjct: 621 VRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDK 653



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 198/390 (50%), Gaps = 22/390 (5%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           E+++LF  + EK+  SWN+M+A FAQ+    +AL     M   +   N  +  + L AC+
Sbjct: 108 ESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACS 167

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
           R   L+ G +IH  I +   + D+F+ + L D Y+KCG +  A+ VF+ +  ++ VS+N 
Sbjct: 168 RLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNC 227

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK- 187
           LI  Y Q     E+L  F  M  LG K D V+    +SACA LAA K+G +IH   ++  
Sbjct: 228 LITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSD 287

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                L + N+++D Y + GR++ A  +FD +PV+++ S  T++ GY     V  A ++F
Sbjct: 288 KFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMF 347

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY-------ACM 300
             +++     D VS+ A++   +  G  E+    F  ++ +SV PT   +       A +
Sbjct: 348 ATIKQK----DIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANL 403

Query: 301 VDL-LGRAG---LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
            DL LGR     +++   +       EPD  +  +L+      G+VE G    E+  M++
Sbjct: 404 ADLELGRQAHSHVVKHGFRFQSG--EEPDIFVGNSLIDMYMKCGSVEEGLRVFEN--MVE 459

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELM 386
             H  +  ++   YA+ G   EA ++ + M
Sbjct: 460 KDHVSWNTMIIG-YAQNGYGMEALELFQKM 488



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 138/301 (45%), Gaps = 33/301 (10%)

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
           F +S     +L  C +    R  + +H R+I+     ++F+ N L D+Y KCG L+ A+ 
Sbjct: 21  FTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARK 80

Query: 115 VFN-------ISF-------------------------RDEVSYNILIVGYSQTSDCSES 142
           VF+        SF                         +D+ S+N +I G++Q     E+
Sbjct: 81  VFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEA 140

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
           L  F  M       +  SF   +SAC+ L  +K G +IHG+  +      +F+ + ++DF
Sbjct: 141 LDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDF 200

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y++ G +  A ++FD +  K+  SWN LI  Y   G    A+  F  M E G   D V+ 
Sbjct: 201 YSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTL 260

Query: 263 IAILTACSHGGLVEKGKKYFDE-MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
            ++++AC+     ++G +     +++D  +   +    +VD+  + G + +A  +   +P
Sbjct: 261 ASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMP 320

Query: 322 V 322
           V
Sbjct: 321 V 321



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     E   +F N+ EK+ VSWN M+  +AQN   ++AL+L ++M    E P+ VT
Sbjct: 440 MYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVT 499

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           +   L AC+    +  G+     + ++ GL         + D+  + GCL  A+++
Sbjct: 500 MIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDL 555


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 156/417 (37%), Positives = 251/417 (60%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSV 59
           MYAK      AS +F  +A +N V+W+A+V  F      L+A  L ++M      F +  
Sbjct: 277 MYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPT 336

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           ++ + L ACA    L  GK++HA + + GL+ DL   N+L  MYAK G ++ A  +F+ +
Sbjct: 337 SVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQM 396

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D VSY+ L+ GY Q     E+  +F +M+   ++ DV + +  I AC++LAA++ GK
Sbjct: 397 VVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGK 456

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             HG  I + + +   + N+++D Y + GRIDL+ +IFD +P +D  SWNT+I GYG+ G
Sbjct: 457 CGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHG 516

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A  LF  M+      D V++I +++ACSH GLV +GK++F  M     + P   HY
Sbjct: 517 LGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHY 576

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
             MVDLL R G +++A + I+ +P++ D  +WGALLGACR++ N++LG   +  +  L P
Sbjct: 577 IGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGP 636

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +  G ++LLSN+++ AG++DEA++VR + K +  KK+PGCSW++    +  F+  DR
Sbjct: 637 EGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDR 693



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 186/369 (50%), Gaps = 17/369 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFA---QNRLELKALQLVREMPIHNEFPN 57
           +YAK +    A+ +F  +  +++V+WNAM+A +A   +    +  L L+++    +  PN
Sbjct: 173 VYAKCASFRHAATVFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQD----DHAPN 228

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD----LFLTNALTDMYAKCGCLNLAQ 113
           + TL  +LP  A+   L  G+ +HA  +R     D    + +  AL DMYAKCG L  A 
Sbjct: 229 ASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYAS 288

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-DVVSFMGAISACANL 171
            VF  ++ R+EV+++ L+ G+       E+ SLF +M   G+      S   A+ ACANL
Sbjct: 289 RVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANL 348

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
           + +  GK++H +  +  LHT L   NS+L  Y ++G ID A  +FD + VKD+ S++ L+
Sbjct: 349 SDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALV 408

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
            GY   G+ D A  +F  M+   V  D  + ++++ ACSH   ++ GK     +    + 
Sbjct: 409 SGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIA 468

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
                   ++D+  + G ++ + ++   +P   D   W  ++    I+G   LG  A   
Sbjct: 469 SETSICNALIDMYAKCGRIDLSRQIFDVMPAR-DIVSWNTMIAGYGIHG---LGKEATAL 524

Query: 352 LFMLKPQHC 360
              +K Q C
Sbjct: 525 FLDMKHQAC 533



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 195/442 (44%), Gaps = 84/442 (19%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A +LF  I    I  +NA++  ++     L               PN+ T   VL AC+ 
Sbjct: 82  ARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKACSA 141

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
              LR  + +H    R GL+ DLF++ AL D+YAKC     A  VF  +  RD V++N +
Sbjct: 142 LLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAM 201

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHD----VVSFMGAISACANLAAIKQGKEIHGVTI 185
           + GY+     S++++      LL M+ D      + +  +   A   A+ QG+ +H  ++
Sbjct: 202 LAGYALHGKYSDTIAC-----LLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYSV 256

Query: 186 RK-HLHTH---LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
           R   LH H   + V  ++LD Y + G +  A+++F+ + V++  +W+ L+ G+ + G + 
Sbjct: 257 RACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRML 316

Query: 242 TAINLFEAMREDGVGY-DPVSYIAILTACSH----------------------------- 271
            A +LF+ M   G+ +  P S  + L AC++                             
Sbjct: 317 EAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSL 376

Query: 272 ------GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---V 322
                  GL+++    FD+M    VK T + Y+ +V    + G  ++A ++ + +    V
Sbjct: 377 LSMYAKAGLIDQATTLFDQM---VVKDT-VSYSALVSGYVQNGKADEAFRVFRKMQACNV 432

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL--------------LSN 368
           +PD     +L+ AC              HL  L+   CG+  +              L +
Sbjct: 433 QPDVATMVSLIPAC-------------SHLAALQHGKCGHGSVIVRGIASETSICNALID 479

Query: 369 MYAEAGKWDEASKVRELMKSRE 390
           MYA+ G+ D + ++ ++M +R+
Sbjct: 480 MYAKCGRIDLSRQIFDVMPARD 501



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 110/246 (44%), Gaps = 15/246 (6%)

Query: 106 CGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGA 164
           CG L+LA+++F+ I       YN LI  YS            S  R    + +  +F   
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           + AC+ L  ++  + +H    R  LH  LFV+ +++D Y +      A  +F  +P +D 
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            +WN ++ GY + G+    I     M++D    +  + +A+L   +  G + +G+     
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLMQDDHAP-NASTLVALLPLLAQHGALSQGR----A 250

Query: 285 MQADSVKPTEMH--------YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
           + A SV+   +H           ++D+  + G +  A ++ + + V  +   W AL+G  
Sbjct: 251 VHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVT-WSALVGGF 309

Query: 337 RIYGNV 342
            + G +
Sbjct: 310 VLCGRM 315


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 166/437 (37%), Positives = 257/437 (58%), Gaps = 34/437 (7%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  I+ K++VSWN+M++ FAQ      AL+L  +M   N  PNSVT+  VL ACA+
Sbjct: 180 AERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAK 239

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN------------- 117
              L  G+ + + I RKG+  DL L NA+ DMY KCG ++ AQ +F+             
Sbjct: 240 KLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIM 299

Query: 118 -------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM-KHD 157
                              +  ++  ++N+LI  Y Q     E+L++F+E++L  + K D
Sbjct: 300 LDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPD 359

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
            V+ +  +SACA L AI  G  IH    R+ +  +  + +S++D Y + G ++ A ++F 
Sbjct: 360 EVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFY 419

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            +  +D   W+ +I G GM G    AI+LF  M+E  V  + V++  +L ACSH GLV++
Sbjct: 420 SVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDE 479

Query: 278 GKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
           G+ +F EM+    V P   HYACMVD+LGRAG +E+A++LI  +   P A++WGALLGAC
Sbjct: 480 GRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGAC 539

Query: 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPG 396
            ++ NVELG  A++ L  L+P++ G  +LLSN+YA+ G+W++ S++R+LM+  E KK PG
Sbjct: 540 SLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPG 599

Query: 397 CSWVQTRDEVQDFVVND 413
           CS ++    V +F+V D
Sbjct: 600 CSSIEANGNVHEFLVGD 616



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 181/389 (46%), Gaps = 50/389 (12%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSVTLTNVLPACA 69
           A  LF  I + N+ +WN ++  +A +    ++  +  ++    E  PN  T   V+ A +
Sbjct: 78  ARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAAS 137

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
                R G  +H   I+     DL++ N+L   Y  CG L++A+ +F  IS +D VS+N 
Sbjct: 138 ELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNS 197

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +I  ++Q +   ++L LF +M    +  + V+ +G +SACA    ++ G+ +     RK 
Sbjct: 198 MISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKG 257

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           +   L + N++LD YT+ G +D A K+FD +P +D  SW  ++ GY  +G+ D A  +F 
Sbjct: 258 IKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFN 317

Query: 249 AMREDGVGYDPVSYIA----ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLL 304
           AM        PV  IA    +++A    G  ++    F+E+Q   +              
Sbjct: 318 AM--------PVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKI-------------- 355

Query: 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ---HCG 361
                             +PD     + L AC   G ++LG W   H+++ +     +C 
Sbjct: 356 -----------------AKPDEVTLVSTLSACAQLGAIDLGGWI--HVYIKREGIVLNCH 396

Query: 362 YYILLSNMYAEAGKWDEASKVRELMKSRE 390
               L +MYA+ G  ++A +V   ++ R+
Sbjct: 397 LISSLVDMYAKCGSLEKALEVFYSVEERD 425



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 159/325 (48%), Gaps = 15/325 (4%)

Query: 78  KEIHARIIRKGLNFDLFLTNAL--TDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYS 134
           KE+HAR++R GL FD F  + L      +    L+ A+N+F+ I   +  ++N LI  Y+
Sbjct: 42  KEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYA 101

Query: 135 QTSDCSESLSLFSEMRLLGMKHDV---VSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
            +SD  +S  +F  + LL    D+    +F   I A + L A + G  +HG+ I+     
Sbjct: 102 SSSDPFQSFVIF--LDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGM 159

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            L++ NS++ FY   G + +A ++F  +  KD  SWN++I  +      + A+ LF  M 
Sbjct: 160 DLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKME 219

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
            + V  + V+ + +L+AC+    +E G+     ++   +K        M+D+  + G ++
Sbjct: 220 RENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVD 279

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP-QHCGYYILLSNMY 370
           DA KL   +P E D   W  +L      G+ +    AA  +F   P +    + +L + Y
Sbjct: 280 DAQKLFDEMP-ERDVFSWTIMLDGYAKMGDYD----AARLVFNAMPVKEIAAWNVLISAY 334

Query: 371 AEAGKWDEASKV-RELMKSREAKKN 394
            + GK  EA  +  EL  S+ AK +
Sbjct: 335 EQNGKPKEALAIFNELQLSKIAKPD 359



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 118/241 (48%), Gaps = 18/241 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN-EFPNSVT 60
           YAK      A  +F+ +  K I +WN +++ + QN    +AL +  E+ +     P+ VT
Sbjct: 303 YAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVT 362

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L + L ACA+   +  G  IH  I R+G+  +  L ++L DMYAKCG L  A  VF ++ 
Sbjct: 363 LVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVE 422

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK- 178
            RD   ++ +I G         ++ LF EM+   +K + V+F   + AC++   + +G+ 
Sbjct: 423 ERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRV 482

Query: 179 ------EIHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTL 230
                  ++GV    KH          ++D   R+G ++ A ++ + +    SAS W  L
Sbjct: 483 FFHEMEPVYGVVPEMKHYAC-------MVDILGRAGFLEEAMELINEMSTTPSASVWGAL 535

Query: 231 I 231
           +
Sbjct: 536 L 536



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F+++ E+++  W+AM+A    +     A+ L  EM      PNSVT
Sbjct: 404 MYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVT 463

Query: 61  LTNVLPACARGHFLRPGK 78
            TNVL AC+    +  G+
Sbjct: 464 FTNVLCACSHAGLVDEGR 481


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 155/417 (37%), Positives = 250/417 (59%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSV 59
           MYAK  +   A  +FH +  +N V+W+A++  F       +A  L ++M +    F ++ 
Sbjct: 249 MYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSAT 308

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           ++ + L  CA    L  G ++HA I + G++ DL  +N+L  MYAK G +N A   F+ I
Sbjct: 309 SVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEI 368

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + +D +SY  L+ G  Q     E+  +F +M+   M+ D+ + +  I AC++LAA++ GK
Sbjct: 369 AVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGK 428

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             HG  I + L     + NS++D Y + G+IDL+ ++FD +P +D  SWNT+I GYG+ G
Sbjct: 429 CSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHG 488

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A  LF  M+  G   D V++I ++ ACSH GLV +GK +FD M     + P   HY
Sbjct: 489 LGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHY 548

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLL R GL+++A + I+++P++ D  +WGALLGACRI+ N++LG   +  +  L P
Sbjct: 549 ICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGP 608

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +  G ++LLSN+++ AG++DEA++VR + K +  KK+PG SW++    +  FV  D+
Sbjct: 609 EGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQ 665



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 205/433 (47%), Gaps = 52/433 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +Y + +R   A  +F  +  +++V+WNAM+A +A + +   A+  + +M  H    PN+ 
Sbjct: 144 LYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNAS 203

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFD---LFLTNALTDMYAKCGCLNLAQNVF 116
           TL ++LP  A+   L  G  IHA  +R  L  +   + +  AL DMYAKC  L  A  VF
Sbjct: 204 TLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVF 263

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-DVVSFMGAISACANLAAI 174
           + +  R++V+++ LI G+      +E+ +LF +M + G+      S   A+  CA+LA +
Sbjct: 264 HGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADL 323

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G ++H +  +  +H  L  +NS+L  Y ++G I+ A   FD + VKD+ S+  L+ G 
Sbjct: 324 HMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGC 383

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK--------------- 279
              G+ + A  +F+ M+   +  D  + ++++ ACSH   ++ GK               
Sbjct: 384 VQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALET 443

Query: 280 --------------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL--- 316
                               + FD+M A  V    + +  M+   G  GL ++A  L   
Sbjct: 444 SICNSLIDMYAKCGKIDLSRQVFDKMPARDV----VSWNTMIAGYGIHGLGKEATTLFLG 499

Query: 317 IKNLPVEPDANIWGALLGACRIYGNVELGA-W--AAEHLFMLKPQHCGYYILLSNMYAEA 373
           +KN    PD   +  L+ AC   G V  G  W     H + + P+   +YI + ++ A  
Sbjct: 500 MKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPR-MEHYICMVDLLARG 558

Query: 374 GKWDEASKVRELM 386
           G  DEA +  + M
Sbjct: 559 GLLDEAYQFIQSM 571



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 194/430 (45%), Gaps = 55/430 (12%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           A A  +F  I   +  ++NA++  ++       A+ L R M      PN  T   VL AC
Sbjct: 51  ALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKAC 110

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYN 127
           +    LR G+ IHA     GL+ DLF++ AL D+Y +C     A+NVF  +  RD V++N
Sbjct: 111 SALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWN 170

Query: 128 ILIVGYSQTSDCSESLSLFSEMR-LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
            ++ GY+       +++   +M+   G++ +  + +  +   A   A+ QG  IH   +R
Sbjct: 171 AMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLR 230

Query: 187 KHLHT---HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
             L      + +  ++LD Y +  ++  A ++F  +PV++  +W+ LI G+ +   +  A
Sbjct: 231 ACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEA 290

Query: 244 INLFEAMREDGVGYDPVSYIA------------------------------------ILT 267
            NLF+ M  +G+ +   + +A                                    +L+
Sbjct: 291 FNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLS 350

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---VEP 324
             +  GL+ +   +FDE+   +VK T + Y  ++    + G  E+A  + K +    +EP
Sbjct: 351 MYAKAGLINEATMFFDEI---AVKDT-ISYGALLSGCVQNGKAEEAFLVFKKMQACNMEP 406

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFM----LKPQHCGYYILLSNMYAEAGKWDEAS 380
           D     +L+ AC     ++ G  +   + +    L+   C   I   +MYA+ GK D + 
Sbjct: 407 DIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLI---DMYAKCGKIDLSR 463

Query: 381 KVRELMKSRE 390
           +V + M +R+
Sbjct: 464 QVFDKMPARD 473



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 12/237 (5%)

Query: 107 GCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI 165
           G L LA+ VF+ I   D  +YN LI  YS       ++ L+  M    +  +  +F   +
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
            AC+ L  ++ G+ IH       LHT LFV+ +++D Y R  R   A  +F  +P++D  
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP-----VSYIAILTACSHGGLVEKGKK 280
           +WN ++ GY   G    AI     M++ G G  P     VS + +L    HG L +    
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHG-GLRPNASTLVSLLPLLA--QHGALFQGTSI 224

Query: 281 YFDEMQA--DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +   ++A  +  +   +    ++D+  +   +  A ++   +PV  D   W AL+G 
Sbjct: 225 HAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVT-WSALIGG 280


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 165/439 (37%), Positives = 257/439 (58%), Gaps = 26/439 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           MY    +      +F +I  + I  WNAM++ +A+N L+ KAL L  EM  +    PN+ 
Sbjct: 342 MYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTT 401

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T+ +V+PAC         + IH   ++ G   D ++ NAL DMY++ G +++++ +F+ +
Sbjct: 402 TMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSM 461

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-----------------GMKHDVVSF 161
             RD VS+N +I GY  +   S +L L  EM+ +                   K + ++ 
Sbjct: 462 EVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITL 521

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           M  +  CA LAAI +GKEIH   IR  L + + V ++++D Y + G ++L+ ++F+ +P 
Sbjct: 522 MTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPN 581

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAM-REDGVGYDP----VSYIAILTACSHGGLVE 276
           K+  +WN LI+  GM G+ + A+ LF+ M  E G G +     V++I +  ACSH GL+ 
Sbjct: 582 KNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLIS 641

Query: 277 KGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD-ANIWGALLG 334
           +G   F  M+ D  V+PT  HYAC+VDLLGRAG +E+A +L+  +P E D    W +LLG
Sbjct: 642 EGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLG 701

Query: 335 ACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394
           ACRI+ NVELG  AA++L  L+P    +Y+LLSN+Y+ AG W++A +VR+ M+    KK 
Sbjct: 702 ACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKE 761

Query: 395 PGCSWVQTRDEVQDFVVND 413
           PGCSW++ RDEV  F+  D
Sbjct: 762 PGCSWIEFRDEVHKFMAGD 780



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 196/403 (48%), Gaps = 46/403 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R  ++  LF +  ++++VSWN M+++F+Q+    +AL   R M +     + VT
Sbjct: 240 MYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVT 299

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDL----FLTNALTDMYAKCGCLNLAQNVF 116
           + +VLPAC+    L  GKEIHA ++R   N DL    F+ +AL DMY  C  +   + VF
Sbjct: 300 IASVLPACSHLERLDVGKEIHAYVLR---NNDLIENSFVGSALVDMYCNCRQVESGRRVF 356

Query: 117 N--ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAA 173
           +  +  R E+ +N +I GY++     ++L LF EM ++ G+  +  +    + AC +  A
Sbjct: 357 DHILGRRIEL-WNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEA 415

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
               + IHG  ++       +V N+++D Y+R G++D++  IFD + V+D  SWNT+I G
Sbjct: 416 FSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITG 475

Query: 234 YGMLGEVDTAINLFEAMRE---------------DGVGYDP--VSYIAILTACSHGGLVE 276
           Y + G    A+ L   M+                 G  Y P  ++ + +L  C+    + 
Sbjct: 476 YVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIA 535

Query: 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
           KGK+       + +       + +VD+  + G +  + ++   +P   +   W  L+ AC
Sbjct: 536 KGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMAC 594

Query: 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA 379
            ++G    G  A E              L  NM AEAG+  EA
Sbjct: 595 GMHGK---GEEALE--------------LFKNMVAEAGRGGEA 620



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 149/278 (53%), Gaps = 9/278 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +   +F  I +++ VSWN+ +A   +     +AL+  R M + N   +S T
Sbjct: 137 MYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFT 196

Query: 61  LTNVLPACAR---GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           L +V  AC+     H LR GK++H   +R G +   F  NAL  MYAK G ++ ++ +F 
Sbjct: 197 LVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFE 255

Query: 118 ISF--RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
            SF  RD VS+N +I  +SQ+   SE+L+ F  M L G++ D V+    + AC++L  + 
Sbjct: 256 -SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLD 314

Query: 176 QGKEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
            GKEIH   +R + L  + FV ++++D Y    +++   ++FD +  +    WN +I GY
Sbjct: 315 VGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGY 374

Query: 235 GMLGEVDTAINLF-EAMREDGVGYDPVSYIAILTACSH 271
              G  + A+ LF E ++  G+  +  +  +++ AC H
Sbjct: 375 ARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVH 412



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 131/265 (49%), Gaps = 6/265 (2%)

Query: 21  KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80
           ++  SW   + +  ++    +A+    EM +    P++     VL A +    L+ G++I
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 81  HARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSD 138
           HA  ++ G  +  + + N L +MY KCG +     VF+ I+ RD+VS+N  I    +   
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEK 174

Query: 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACANLA---AIKQGKEIHGVTIRKHLHTHLFV 195
             ++L  F  M++  M+    + +    AC+NL     ++ GK++HG ++R       F 
Sbjct: 175 WEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKTFT 233

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            N+++  Y + GR+D +  +F+    +D  SWNT+I  +        A+  F  M  +GV
Sbjct: 234 NNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGV 293

Query: 256 GYDPVSYIAILTACSHGGLVEKGKK 280
             D V+  ++L ACSH   ++ GK+
Sbjct: 294 ELDGVTIASVLPACSHLERLDVGKE 318


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 155/421 (36%), Positives = 253/421 (60%), Gaps = 2/421 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +   + ++++VSW +M+A + Q+    +AL   +EM     +P+++ 
Sbjct: 390 MYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIG 449

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +   ACA    +R G +IHAR+   G   D+ + N L ++YA+CG    A ++F  I 
Sbjct: 450 LASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREID 509

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +DE+++N LI G+ Q+    ++L +F +M   G K++V +F+ AISA ANLA IKQGK+
Sbjct: 510 HKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQ 569

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  ++    +   VAN+++  Y + G I+ A  IF  + +++  SWNT+I      G 
Sbjct: 570 VHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGR 629

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYA 298
              A++LF+ M+++G+  + V++I +L ACSH GLVE+G  YF  M     + P   HYA
Sbjct: 630 GLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYA 689

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VD+LGRAG ++ A + +  +P+  +A IW  LL AC+++ N+E+G  AA+HL  L+P 
Sbjct: 690 CVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPH 749

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
               Y+LLSN YA  GKW    +VR++MK R  +K PG SW++ ++ V  F V DR+   
Sbjct: 750 DSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPL 809

Query: 419 T 419
           +
Sbjct: 810 S 810



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 183/340 (53%), Gaps = 10/340 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK+    +A  +F  ++ ++ VSW AM++ +AQ  L  +A +L  +M      P    
Sbjct: 87  LYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYV 146

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L++VL AC +G     G+ IHA++ ++    + F+ NAL  +Y   G   LA+ VF ++ 
Sbjct: 147 LSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDML 206

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           F D V++N LI G++Q      +L +F EM+L G++ D V+    ++ACA++  +++GK+
Sbjct: 207 FCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQ 266

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++  +        S+LD Y + G I+ A+ IF+     +   WN +++ YG + +
Sbjct: 267 LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISD 326

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK---PTEMH 296
           +  +  +F  M+  G+  +  +Y  IL  C+  G +E G    +++ + S+K    ++M+
Sbjct: 327 LAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELG----EQIHSLSIKNGFESDMY 382

Query: 297 YA-CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            +  ++D+  +   ++ A K+++ L  + D   W +++  
Sbjct: 383 VSGVLIDMYSKYRCLDKARKILEMLE-KRDVVSWTSMIAG 421



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 166/320 (51%), Gaps = 5/320 (1%)

Query: 24  VSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHAR 83
           V++N +++  AQ      ALQ+  EM +    P+ VT+ ++L ACA    L+ GK++H+ 
Sbjct: 211 VTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSY 270

Query: 84  IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILIVGYSQTSDCSES 142
           +++ G++FD     +L D+Y KCG +  A ++FN+  R  V  +N+++V Y Q SD ++S
Sbjct: 271 LLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKS 330

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
             +F +M+  G+  +  ++   +  C     I+ G++IH ++I+    + ++V+  ++D 
Sbjct: 331 FEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDM 390

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y++   +D A KI + L  +D  SW ++I GY      + A+  F+ M++ GV  D +  
Sbjct: 391 YSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGL 450

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
            +  +AC+    + +G +    +           +  +V+L  R G  E+A  L + +  
Sbjct: 451 ASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREID- 509

Query: 323 EPDANIWGALL---GACRIY 339
             D   W  L+   G  R+Y
Sbjct: 510 HKDEITWNGLISGFGQSRLY 529



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 145/304 (47%), Gaps = 6/304 (1%)

Query: 41  KALQLVREMPIHNEFPNSVTLTNVLPAC-ARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99
           K L LV     H+    S  LT  L AC  RG+      EIHA  + +GL  D  + N L
Sbjct: 25  KILSLVAAKASHHRALGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLL 84

Query: 100 TDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
            D+YAK G +  A+ VF  +S RD VS+  ++ GY+Q     E+  L+S+M    +    
Sbjct: 85  IDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTP 144

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
                 +SAC       QG+ IH    ++   +  FV N+++  Y   G   LA ++F  
Sbjct: 145 YVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCD 204

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +   D  ++NTLI G+   G  + A+ +F+ M+  G+  D V+  ++L AC+  G ++KG
Sbjct: 205 MLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKG 264

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
           K+    +    +    +    ++DL  + G +E A  +  NL    +  +W  +L A   
Sbjct: 265 KQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF-NLGDRTNVVLWNLMLVA--- 320

Query: 339 YGNV 342
           YG +
Sbjct: 321 YGQI 324


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 154/402 (38%), Positives = 244/402 (60%), Gaps = 2/402 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + EK++VSWN ++A  A+N L  + L+++REM   N  P+S TL++VLP  A    
Sbjct: 195 IFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVD 254

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRDEVSYNILIVG 132
           +  GKEIH   IR+GL+ D+++ ++L DMYAKC  +  +  VF + + RD +S+N +I G
Sbjct: 255 ISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAG 314

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
             Q     E L  F +M +  +K    SF   + ACA+L  +  GK++HG   R     +
Sbjct: 315 CVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDEN 374

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +F+A+S++D Y + G I  A +IFD + ++D  SW  +I+G  + G+   AI LFE M  
Sbjct: 375 IFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMET 434

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLME 311
           +G+  + V+++A+LTACSHGGLV++  KYF+ M  D  + P   HYA + DLLGRAG +E
Sbjct: 435 EGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLE 494

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371
           +A   I  + + P  +IW  LL ACR++ N+++    A  +  + P + G YILL+N+Y+
Sbjct: 495 EAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYS 554

Query: 372 EAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            A +W EA+K R  M+    +K P CSW++ +++V  F+  D
Sbjct: 555 AARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGD 596



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/418 (24%), Positives = 183/418 (43%), Gaps = 38/418 (9%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           LF+ I     ++W +++  +  + L  ++L     M     +P+     +VL +CA    
Sbjct: 62  LFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMD 121

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL-------AQNVFN--------- 117
           L  G+ +H  IIR GL+FDL+  NAL +MY+K   L         A  VF+         
Sbjct: 122 LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSV 181

Query: 118 -----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS 160
                            +  +D VS+N +I G ++     E+L +  EM    +K D  +
Sbjct: 182 RTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFT 241

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
               +   A    I +GKEIHG +IR+ L   ++VA+S++D Y +  R+  + ++F  L 
Sbjct: 242 LSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLT 301

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            +D  SWN++I G    G  D  +  F  M    +     S+ +I+ AC+H   +  GK+
Sbjct: 302 ERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ 361

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
               +  +         + +VD+  + G +  A ++   + +  D   W A++  C ++G
Sbjct: 362 LHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALHG 420

Query: 341 NVELGAWAAEHLFM--LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPG 396
                    E +    +KP H  +  +L+   +  G  DEA K    M +R+    PG
Sbjct: 421 QAPDAIELFEQMETEGIKPNHVAFMAVLTAC-SHGGLVDEAWKYFNSM-TRDFGIAPG 476



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 136/246 (55%), Gaps = 3/246 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK +R A++  +F  + E++ +SWN+++A   QN L  + L+  R+M +    P S +
Sbjct: 283 MYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYS 342

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++++PACA    L  GK++H  I R G + ++F+ ++L DMYAKCG +  A+ +F+ + 
Sbjct: 343 FSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMR 402

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
            RD VS+  +I+G +      +++ LF +M   G+K + V+FM  ++AC++   + +  K
Sbjct: 403 LRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWK 462

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGML 237
             + +T    +   +    ++ D   R+GR++ A      + +  + S W TL+    + 
Sbjct: 463 YFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVH 522

Query: 238 GEVDTA 243
             +D A
Sbjct: 523 XNIDMA 528


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 168/431 (38%), Positives = 254/431 (58%), Gaps = 18/431 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNI----VSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           Y++  R  +A  LF  + E+ I    V+W+A ++ +AQ  L  +AL + R+M      PN
Sbjct: 305 YSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF-------DLFLTNALTDMYAKCGCLN 110
            VTL +VL  CA    L  GKEIH   I+  ++        +  + N L DMYAKC  ++
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVD 424

Query: 111 LAQNVFNI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFMGAI 165
           +A+ +F+      RD V++ ++I GYSQ  D +++L L SEM       + +  +   A+
Sbjct: 425 IARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484

Query: 166 SACANLAAIKQGKEIHGVTIRKHLH-THLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
            ACA+LAA+  GK+IH   +R   +   LFV+N ++D Y + G I  A  +FD +  K+ 
Sbjct: 485 VACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNE 544

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            +W +L+ GYGM G  + A+ +FE MR  G   D V+ + +L ACSH G++++G +YF+ 
Sbjct: 545 VTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR 604

Query: 285 MQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           M+ D  V P   HYAC+VDLLGRAG +  A++LI+ +P+EP   +W ALL  CRI+G VE
Sbjct: 605 MKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVE 664

Query: 344 LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTR 403
           LG +AA+ +  L   + G Y LLSNMYA AG+W + +++R LM+ +  KK PGCSWV+  
Sbjct: 665 LGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGI 724

Query: 404 DEVQDFVVNDR 414
                F V D+
Sbjct: 725 KGTTTFFVGDK 735



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 145/279 (51%), Gaps = 2/279 (0%)

Query: 19  AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78
           ++  +  WN+++ ++  N    K L     M   +  P++ T   V  AC     +R G 
Sbjct: 88  SDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGD 147

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
             HA     G   ++F+ NAL  MY++CG L+ A+ VF+ +   D VS+N +I  Y++  
Sbjct: 148 SSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLG 207

Query: 138 DCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               +L +FS+M    G + D ++ +  +  CA++     GK+ HG  +   +  ++FV 
Sbjct: 208 KPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVG 267

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N ++D Y + G +D AN +F  +PVKD  SWN ++ GY  +G  + A+ LFE M+E+ + 
Sbjct: 268 NCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIK 327

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
            D V++ A ++  +  GL  +      +M +  +KP E+
Sbjct: 328 MDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEV 366



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 185/394 (46%), Gaps = 54/394 (13%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF---PN 57
           MY++    ++A  +F  +   ++VSWN+++ ++A+      AL++  +M   NEF   P+
Sbjct: 171 MYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMT--NEFGFRPD 228

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF- 116
            +TL NVLP CA       GK+ H   +   +  ++F+ N L DMYAK G ++ A  VF 
Sbjct: 229 DITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFS 288

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI----------- 165
           N+  +D VS+N ++ GYSQ     +++ LF +M+   +K DVV++  AI           
Sbjct: 289 NMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYE 348

Query: 166 ------------------------SACANLAAIKQGKEIHGVTI------RKHLH-THLF 194
                                   S CA++ A+  GKEIH   I      RK+ H     
Sbjct: 349 ALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENM 408

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVK--DSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           V N ++D Y +  ++D+A  +FD L  K  D  +W  +I GY   G+ + A+ L   M E
Sbjct: 409 VINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468

Query: 253 DGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-CMVDLLGRAGL 309
           +     P ++     L AC+    +  GK+       +      +  + C++D+  + G 
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGD 528

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           + DA  +  N+ +E +   W +L+    ++G  E
Sbjct: 529 IGDARLVFDNM-MEKNEVTWTSLMTGYGMHGYGE 561



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 128/270 (47%), Gaps = 6/270 (2%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV---FNISFRDEVSYNILIVGYS 134
           K IH +++  G+   L LT+ L   Y   GCL+ A ++   F  S      +N LI  Y 
Sbjct: 45  KLIHQKLLSFGI-LTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYG 103

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
                ++ LS F  M  L    D  +F     AC  +++++ G   H ++      +++F
Sbjct: 104 NNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVF 163

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM-RED 253
           V N+++  Y+R G +  A K+FD +PV D  SWN++I  Y  LG+   A+ +F  M  E 
Sbjct: 164 VGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEF 223

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
           G   D ++ + +L  C+  G    GK++        +        C+VD+  + G+M++A
Sbjct: 224 GFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEA 283

Query: 314 VKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             +  N+PV+ D   W A++      G  E
Sbjct: 284 NTVFSNMPVK-DVVSWNAMVAGYSQIGRFE 312



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 1/113 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F N+ EKN V+W +++  +  +    +AL +  EM       + VT
Sbjct: 522 MYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVT 581

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLA 112
           L  VL AC+    +  G E   R+    G++        L D+  + G LN A
Sbjct: 582 LLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAA 634


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 154/402 (38%), Positives = 244/402 (60%), Gaps = 2/402 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + EK++VSWN ++A  A+N L  + L +VREM   N  P+S TL++VLP  A    
Sbjct: 256 IFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVD 315

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRDEVSYNILIVG 132
           +  GKEIH   IR+GL+ ++++ ++L DMYAKC  +  +  VF + + RD +S+N +I G
Sbjct: 316 ISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAG 375

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
             Q     E L  F +M +  +K    SF   + ACA+L  +  GK++HG   R     +
Sbjct: 376 CVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDEN 435

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +F+A+S++D Y + G I  A +IFD + ++D  SW  +I+G  + G    AI LFE M+ 
Sbjct: 436 IFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKT 495

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLME 311
           +G+  + V+++A+LTACSH GLV++  KYF+ M  D  + P   HYA + DLLGRAG +E
Sbjct: 496 EGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLE 555

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371
           +A   I  +P+ P  ++W  LL ACR++ NV++    A  +  + P++ G YILL+N+Y+
Sbjct: 556 EAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYS 615

Query: 372 EAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            A +W EA+K R  ++    +K P CSW++ R++V  F+  D
Sbjct: 616 AARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGD 657



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 138/246 (56%), Gaps = 3/246 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK +R  ++  +F  + E++ +SWN+++A   QN L  + L+  R+M +    P S +
Sbjct: 344 MYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYS 403

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++++PACA    L  GK++H  I R G + ++F+ ++L DMYAKCG +  A+ +F+ + 
Sbjct: 404 FSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMR 463

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
            RD VS+  +I+G +      +++ LF +M+  G++ + V+FM  ++AC++   + +  K
Sbjct: 464 LRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWK 523

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGML 237
             + +T+   +   +    ++ D   R+GR++ A      +P+  + S W TL+    + 
Sbjct: 524 YFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVH 583

Query: 238 GEVDTA 243
             VD A
Sbjct: 584 KNVDMA 589



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 148/358 (41%), Gaps = 28/358 (7%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           LF+ +     ++W +++  +  + L  K+L     M     +P+     +VL ACA    
Sbjct: 64  LFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMD 123

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGY 133
           L  G+ +H  IIR GL+FDL+  NAL +MY+K   L         S R         +G 
Sbjct: 124 LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKK-------SGRQR-------LGA 169

Query: 134 SQTSD--CSESLSLFSEMRLLGMKHDVVSFMGAIS---ACANLAAIKQGKEIHGVTIRKH 188
           SQ  D     + S+ +   L+G +   VS + A +   +C +     Q  EI      ++
Sbjct: 170 SQVLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEY 229

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
                      +   + S  +D   KIF+ +P KD  SWNT+I G    G     + +  
Sbjct: 230 REMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVR 289

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMHYA-CMVDLL 304
            M    +  D  +  ++L   +    + KGK    E+   S++     E++ A  ++D+ 
Sbjct: 290 EMGGANLKPDSFTLSSVLPLIAENVDISKGK----EIHGCSIRQGLDAEVYVASSLIDMY 345

Query: 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362
            +   + D+ ++   L  E D   W +++  C   G  + G      + M K +   Y
Sbjct: 346 AKCTRVVDSYRVF-TLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSY 402



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 133/342 (38%), Gaps = 67/342 (19%)

Query: 102 MYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS 160
           +Y+    L+ +  +FN + F   +++  +I  Y+      +SL  F  M   G+  D   
Sbjct: 51  IYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNV 110

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT------RSGRIDL-AN 213
           F   + ACA L  +  G+ +HG  IR  L   L+  N++++ Y+      +SGR  L A+
Sbjct: 111 FPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGAS 170

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED-------------GVGYDPV 260
           ++ D +  +  +     +L    +G     ++  EA   D              + Y P 
Sbjct: 171 QVLDEMTERTRSVRTASVL----VGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPR 226

Query: 261 SYIAILTAC---------SHGGLVEKGKKYFDEM-QADSVKPTEM-----------HYAC 299
           S    + AC         SH   V+  +K F+ M + D V    +               
Sbjct: 227 SEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLT 286

Query: 300 MVDLLGRAGLMEDAVKLIKNLP-VEPDANIW-GALLGACRIYGNVELGAWAAEHLFMLKP 357
           MV  +G A L  D+  L   LP +  + +I  G  +  C I   ++   + A  L     
Sbjct: 287 MVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLI---- 342

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSW 399
                     +MYA+  +  ++ +V  L+  R+     G SW
Sbjct: 343 ----------DMYAKCTRVVDSYRVFTLLTERD-----GISW 369


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 155/416 (37%), Positives = 242/416 (58%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  + +K +V+WN+M++ +      +  +QL + M      P   T
Sbjct: 251 MYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTT 310

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L++++  C+R   L  GK +H   IR  +  D+F+ ++L D+Y KCG + LA+N+F +  
Sbjct: 311 LSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIP 370

Query: 121 RDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           + +V S+N++I GY       E+L LFSEMR   ++ D ++F   ++AC+ LAA+++G+E
Sbjct: 371 KSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEE 430

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH + I K L  +  V  ++LD Y + G +D A  +F CLP +D  SW ++I  YG  G+
Sbjct: 431 IHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQ 490

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+ LF  M +  +  D V+++AIL+AC H GLV++G  YF++M     + P   HY+
Sbjct: 491 AYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYS 550

Query: 299 CMVDLLGRAGLMEDAVKLIKNLP-VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           C++DLLGRAG + +A ++++  P +  D  +   L  ACR++ N++LGA  A  L    P
Sbjct: 551 CLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDP 610

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
                YILLSNMYA A KWDE   VR  MK    KKNPGCSW++   ++  F V D
Sbjct: 611 DDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFFVED 666



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 202/386 (52%), Gaps = 13/386 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK +   +A +LF+ + EK++  WN +++ + Q+    +AL+    M      PNSVT
Sbjct: 150 MYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVT 209

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +T  + +CAR   L  G EIH  +I  G   D F+++AL DMY KCG L +A  VF  + 
Sbjct: 210 ITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMP 269

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  V++N +I GY    D    + LF  M   G+K  + +    I  C+  A + +GK 
Sbjct: 270 KKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKF 329

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG TIR  + + +F+ +S++D Y + G+++LA  IF  +P     SWN +I GY   G+
Sbjct: 330 VHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGK 389

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +  A+ LF  MR+  V  D +++ ++LTACS    +EKG++  + +    +   E+    
Sbjct: 390 LFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGA 449

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM----- 354
           ++D+  + G +++A  + K LP + D   W +++ A   +G     A+ A  LF      
Sbjct: 450 LLDMYAKCGAVDEAFSVFKCLP-KRDLVSWTSMITAYGSHGQ----AYVALELFAEMLQS 504

Query: 355 -LKPQHCGYYILLSNMYAEAGKWDEA 379
            +KP    +  +LS     AG  DE 
Sbjct: 505 NMKPDRVTFLAILSAC-GHAGLVDEG 529



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 202/420 (48%), Gaps = 42/420 (10%)

Query: 11  ASYLFHNIAEKNIVS-WNAMVANFAQNRLELKALQLVREMPIHNEF--PNSVTLTNVLPA 67
           A  +F N+     +S WN ++A + +N + ++AL+L  ++ +H  +  P+S T  +VL A
Sbjct: 57  AKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKL-LHYPYLKPDSYTYPSVLKA 115

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSY 126
           C   +    GK IH  +++ GL  D+ + ++L  MYAKC     A  +FN +  +D   +
Sbjct: 116 CGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACW 175

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           N +I  Y Q+ +  E+L  F  MR  G + + V+   AIS+CA L  + +G EIH   I 
Sbjct: 176 NTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELIN 235

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
                  F++++++D Y + G +++A ++F+ +P K   +WN++I GYG+ G+  + I L
Sbjct: 236 SGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQL 295

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
           F+ M  +GV     +  +++  CS    + +GK        + ++      + ++DL  +
Sbjct: 296 FKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFK 355

Query: 307 AGLMEDAVKLIKNLP----------------------------------VEPDANIWGAL 332
            G +E A  + K +P                                  VEPDA  + ++
Sbjct: 356 CGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSV 415

Query: 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL--LSNMYAEAGKWDEASKVRELMKSRE 390
           L AC     +E G     +L + K       ++  L +MYA+ G  DEA  V + +  R+
Sbjct: 416 LTACSQLAALEKGE-EIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRD 474



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 137/284 (48%), Gaps = 4/284 (1%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L  +L AC     L+ GK IH +++  GL  D+FL   L ++Y  C   + A+ VF N+ 
Sbjct: 6   LLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNME 65

Query: 120 FRDEVS-YNILIVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLAAIKQG 177
              E+S +N L+ GY++     E+L LF + +    +K D  ++   + AC  L     G
Sbjct: 66  NPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLG 125

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K IH   ++  L   + V +S++  Y +    + A  +F+ +P KD A WNT+I  Y   
Sbjct: 126 KMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQS 185

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G    A+  F  MR  G   + V+    +++C+    + +G +  +E+            
Sbjct: 186 GNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFIS 245

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           + +VD+ G+ G +E A+++ + +P +     W +++    + G+
Sbjct: 246 SALVDMYGKCGHLEMAIEVFEQMP-KKTVVAWNSMISGYGLKGD 288



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 9/192 (4%)

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
           D    +  + AC N  ++KQGK IH   +   L   +F+  ++++ Y      D A  +F
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVF 61

Query: 217 DCL--PVKDSASWNTLILGYGMLGEVDTAINLFEA-MREDGVGYDPVSYIAILTACSHGG 273
           D +  P + S  WN L+ GY        A+ LFE  +    +  D  +Y ++L AC  GG
Sbjct: 62  DNMENPCEISL-WNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKAC--GG 118

Query: 274 LVEK--GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
           L +   GK     +    +    +  + +V +  +    E A+ L   +P E D   W  
Sbjct: 119 LYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMP-EKDVACWNT 177

Query: 332 LLGACRIYGNVE 343
           ++      GN +
Sbjct: 178 VISCYYQSGNFK 189


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 156/416 (37%), Positives = 246/416 (59%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F  +  ++ VSWNA++A   QN  E K L L   M      P+  T
Sbjct: 420 MYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFT 479

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL ACA    L  G EIH RII+  L  D F+  AL DMY+KCG +  A+ + + ++
Sbjct: 480 YGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLA 539

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N +I G+S      E+   FS+M  +G+  D  ++   +  CANL  ++ GK+
Sbjct: 540 EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQ 599

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+K L +  +++++++D Y++ G +     IF+  P +D  +WN ++ GY   G 
Sbjct: 600 IHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGL 659

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A+ +FE M+ + V  +  +++A+L AC H GLVEKG  YF  M ++  + P   HY+
Sbjct: 660 GEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYS 719

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VD++GR+G +  A++LI+ +P E DA IW  LL  C+I+GNVE+   AA  +  L+P+
Sbjct: 720 CVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPE 779

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y+LLSN+YA AG W+E +K+R++M+    KK PGCSW++ + EV  F+V D+
Sbjct: 780 DSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDK 835



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 172/334 (51%), Gaps = 2/334 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  +   +   FH++ EKN VSW+A++A   QN      L+L +EM       +  T
Sbjct: 218 MYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQST 277

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +V  +CA    LR G ++H   ++     D+ +  A  DMY KC  L+ AQ +FN + 
Sbjct: 278 FASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLP 337

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             +  SYN +IVGY+++    E+L +F  ++  G+  D VS  GA  ACA +    +G +
Sbjct: 338 NHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQ 397

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG++++    +++ VAN+ILD Y + G +  A  +F+ +  +D+ SWN +I  +   G 
Sbjct: 398 VHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGN 457

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            +  ++LF  M + G+  D  +Y ++L AC+    +  G +  + +    +         
Sbjct: 458 EEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIA 517

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           ++D+  + G+ME A KL   L  E     W A++
Sbjct: 518 LIDMYSKCGMMEKAEKLHDRL-AEQTVVSWNAII 550



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 168/347 (48%), Gaps = 10/347 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A  LF  + E+++VSWN++++ +  N    K + +  +M       +  T 
Sbjct: 118 YAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTF 177

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
             VL +C+       G +IH   ++ G + D+   +AL DMYAKC  L+ +   F ++  
Sbjct: 178 AVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPE 237

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ VS++ +I G  Q  D    L LF EM+  G+     +F     +CA L+A++ G ++
Sbjct: 238 KNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQL 297

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  ++    T + +  + LD Y +   +  A K+F+ LP  +  S+N +I+GY    + 
Sbjct: 298 HGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKG 357

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC- 299
             A+ +F  +++ G+G D VS      AC+    V KG     ++   S+K       C 
Sbjct: 358 IEALGMFRLLQKSGLGLDEVSLSGAFRACA----VIKGDLEGLQVHGLSMKSLCQSNICV 413

Query: 300 ---MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
              ++D+ G+ G + +A  + + + V  DA  W A++ A    GN E
Sbjct: 414 ANAILDMYGKCGALVEACLVFEEM-VSRDAVSWNAIIAAHEQNGNEE 459



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 32/294 (10%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
           T +++   C+    L PGK+ HAR+I       +F+TN L  MY KC  L  A  VF+  
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 118 -----ISF-------------------------RDEVSYNILIVGYSQTSDCSESLSLFS 147
                +S+                         RD VS+N LI GY    D  + + +F 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           +M  +G   D  +F   + +C++L     G +IHG+ ++      +   +++LD Y +  
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
           ++D + + F  +P K+  SW+ +I G     ++   + LF+ M++ GVG    ++ ++  
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFR 283

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
           +C+    +  G +              +     +D+  +   + DA KL  +LP
Sbjct: 284 SCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLP 337


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 165/419 (39%), Positives = 247/419 (58%), Gaps = 17/419 (4%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN--EFPNSVTLTNVLPAC 68
           A  +F  I   N+ +WN ++  +A +    ++L +   M +H   +FP+  T   ++ A 
Sbjct: 88  AQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRM-LHQSPDFPDKFTFPFLIKAA 146

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYN 127
           +    L  GK  H  +I+  L  D+F+ N+L   YAKCG L L   VF N   RD VS+N
Sbjct: 147 SELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWN 206

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            +I  + Q     E+L LF EM    +K + ++ +G +SACA  +  + G+ +H    R 
Sbjct: 207 SMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERN 266

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA---- 243
            +   L ++N++LD YT+ G ++ A ++FD +P KD  SW T+++GY  +GE D A    
Sbjct: 267 RIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLA 326

Query: 244 --------INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPTE 294
                   I LF  M+ED V  + V++  IL ACSH GLVE+G+ +F++M+    V P  
Sbjct: 327 MHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGV 386

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYACMVD+LGRAGL+E+AV+LI+ +P+ P A++WGALLGAC I+ NV L   A   L  
Sbjct: 387 KHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIE 446

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           L+P + G Y+LLSN+YA+AGKWD  S +R+LM+    KK PGCS ++    V +F+V D
Sbjct: 447 LEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGD 505



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 152/311 (48%), Gaps = 25/311 (8%)

Query: 40  LKALQLVREMPIHNEFPNSVTLTN-----------VLPACARGHFLRPGKEIHARIIRKG 88
           L +L     +P  N  PNS+TL N           ++  C+    L   K+IHA+++R G
Sbjct: 8   LVSLPRSHSLPTPN--PNSITLNNDRYFANHPTLSLIDQCSETKQL---KQIHAQMLRTG 62

Query: 89  LNFDLFLTNALTDMYA--KCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSL 145
           L FD F  + L    A      L+ AQ VF+ I   +  ++N LI  Y+ +S+  +SL +
Sbjct: 63  LFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLI 122

Query: 146 FSEMRLLGMKHDV---VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
           F  +R+L    D     +F   I A + L  +  GK  HG+ I+  L + +F+ NS++ F
Sbjct: 123 F--LRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHF 180

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y + G + L  ++F   P +D  SWN++I  +   G  + A+ LF+ M    V  + ++ 
Sbjct: 181 YAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITM 240

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
           + +L+AC+     E G+     ++ + +  +      M+D+  + G +EDA +L   +P 
Sbjct: 241 VGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMP- 299

Query: 323 EPDANIWGALL 333
           E D   W  +L
Sbjct: 300 EKDIVSWTTML 310



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 132/253 (52%), Gaps = 29/253 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            YAK         +F N   +++VSWN+M+  F Q     +AL+L +EM   N  PN +T
Sbjct: 180 FYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGIT 239

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  VL ACA+      G+ +H+ I R  +   L L+NA+ DMY KCG +  A+ +F+ + 
Sbjct: 240 MVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMP 299

Query: 120 FRDEVSYNILIVGYSQTSDC------------SESLSLFSEMRLLGMKHDVVSFMGAISA 167
            +D VS+  ++VGY++  +              ++++LFS+M+   +K + V+F   + A
Sbjct: 300 EKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCA 359

Query: 168 CANLAAIKQGKE-------IHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           C+++  +++G+        ++GV    KH          ++D   R+G ++ A ++ + +
Sbjct: 360 CSHVGLVEEGRTFFNQMELVYGVLPGVKHY-------ACMVDILGRAGLLEEAVELIEKM 412

Query: 220 PVKDSAS-WNTLI 231
           P+  +AS W  L+
Sbjct: 413 PMAPAASVWGALL 425


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 154/410 (37%), Positives = 246/410 (60%), Gaps = 1/410 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  +  K +VSWN M+   AQN    +A     +M    E P  VT
Sbjct: 290 MYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVT 349

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           +  VL ACA    L  G  +H  + +  L+ ++ + N+L  MY+KC  +++A ++FN   
Sbjct: 350 MMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLE 409

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  V++N +I+GY+Q     E+L+LF  M+  G+K D  + +G I+A A+ +  +Q K I
Sbjct: 410 KTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWI 469

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG+ +R  +  ++FV+ +++D Y + G I  A K+FD +  +   +WN +I GYG  G  
Sbjct: 470 HGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVG 529

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
              ++LF  M++  V  + ++++++++ACSH G VE+G   F  MQ D  ++PT  HY+ 
Sbjct: 530 KETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSA 589

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGRAG ++DA   I+ +P++P  ++ GA+LGAC+I+ NVELG  AA+ LF L P  
Sbjct: 590 MVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDE 649

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
            GY++LL+N+YA    WD+ +KVR  M+ +   K PGCSWV+ R+E+  F
Sbjct: 650 GGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTF 699



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 145/293 (49%), Gaps = 4/293 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           ++ K    +EA+ +F ++  K  V ++ M+  +A+N     AL     M           
Sbjct: 88  LFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGD 147

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              +L  C     L+ G+EIH  II  G   +LF+  A+  +YAKC  ++ A  +F  + 
Sbjct: 148 YACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQ 207

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+  L+ GY+Q      +L L  +M+  G K D V+ +  + A A++ A++ G+ 
Sbjct: 208 HKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRS 267

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG   R    + + V N++LD Y + G   +A  +F  +  K   SWNT+I G    GE
Sbjct: 268 IHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGE 327

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG---KKYFDEMQADS 289
            + A   F  M ++G     V+ + +L AC++ G +E+G    K  D+++ DS
Sbjct: 328 SEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDS 380


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 155/421 (36%), Positives = 253/421 (60%), Gaps = 2/421 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +   + ++++VSW +M+A + Q+    +AL   +EM     +P+++ 
Sbjct: 390 MYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIG 449

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +   ACA    +R G +IHAR+   G   D+ + N L ++YA+CG    A ++F  I 
Sbjct: 450 LASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIE 509

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +DE+++N LI G+ Q+    ++L +F +M   G K++V +F+ AISA ANLA IKQGK+
Sbjct: 510 HKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQ 569

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  ++    +   VAN+++  Y + G I+ A  IF  + +++  SWNT+I      G 
Sbjct: 570 VHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGR 629

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYA 298
              A++LF+ M+++G+  + V++I +L ACSH GLVE+G  YF  M     + P   HYA
Sbjct: 630 GLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYA 689

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VD+LGRAG ++ A + +  +P+  +A IW  LL AC+++ N+E+G  AA+HL  L+P 
Sbjct: 690 CVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPH 749

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
               Y+LLSN YA  GKW    +VR++MK R  +K PG SW++ ++ V  F V DR+   
Sbjct: 750 DSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPL 809

Query: 419 T 419
           +
Sbjct: 810 S 810



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 185/340 (54%), Gaps = 10/340 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK+    +A  +F  ++ ++ VSW AM++ +AQ+ L  +A +L  +M      P    
Sbjct: 87  LYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYV 146

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L++VL AC +G     G+ IHA++ ++    + F+ NAL  +Y   G   LA+ VF ++ 
Sbjct: 147 LSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDML 206

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           F D V++N LI G++Q      +L +F EM+L G++ D V+    ++ACA++  +++GK+
Sbjct: 207 FCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQ 266

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++  +        S+LD Y + G I+ A+ IF+     +   WN +++ YG + +
Sbjct: 267 LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISD 326

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK---PTEMH 296
           +  +  +F  M+  G+  +  +Y  IL  C+  G +E G    +++ + S+K    ++M+
Sbjct: 327 LAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELG----EQIHSLSIKNGFESDMY 382

Query: 297 YA-CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            +  ++D+  + G ++ A K+++ L  + D   W +++  
Sbjct: 383 VSGVLIDMYSKYGCLDKARKILEMLE-KRDVVSWTSMIAG 421



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 167/320 (52%), Gaps = 5/320 (1%)

Query: 24  VSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHAR 83
           V++N +++  AQ      ALQ+  EM +    P+ VT+ ++L ACA    L+ GK++H+ 
Sbjct: 211 VTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSY 270

Query: 84  IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILIVGYSQTSDCSES 142
           +++ G++FD     +L D+Y KCG +  A ++FN+  R  V  +N+++V Y Q SD ++S
Sbjct: 271 LLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKS 330

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
             +F +M+  G+  +  ++   +  C     I+ G++IH ++I+    + ++V+  ++D 
Sbjct: 331 FEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDM 390

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y++ G +D A KI + L  +D  SW ++I GY      + A+  F+ M++ GV  D +  
Sbjct: 391 YSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGL 450

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
            +  +AC+    + +G +    +           +  +V+L  R G  E+A  L + +  
Sbjct: 451 ASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIE- 509

Query: 323 EPDANIWGALL---GACRIY 339
             D   W  L+   G  R+Y
Sbjct: 510 HKDEITWNGLISGFGQSRLY 529



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 177/392 (45%), Gaps = 47/392 (11%)

Query: 41  KALQLVREMPIHNEFPNSVTLTNVLPAC-ARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99
           K L LV     H+    S  LT  L AC  RG+      EIHA  + +GL  D  + N L
Sbjct: 25  KILSLVAAKASHHRALGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLL 84

Query: 100 TDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
            D+YAK G +  A+ VF  +S RD VS+  ++ GY+Q+    E+  L+S+M    +    
Sbjct: 85  IDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTP 144

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
                 +SAC       QG+ IH    ++   +  FV N+++  Y   G   LA ++F  
Sbjct: 145 YVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCD 204

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +   D  ++NTLI G+   G  + A+ +F+ M+  G+  D V+  ++L AC+  G ++KG
Sbjct: 205 MLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKG 264

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---------------------- 316
           K+    +    +    +    ++DL  + G +E A  +                      
Sbjct: 265 KQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQI 324

Query: 317 ------------IKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY-- 362
                       ++   + P+   +  +L  C   G +ELG    E +  L  ++ G+  
Sbjct: 325 SDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELG----EQIHSLSIKN-GFES 379

Query: 363 --YI--LLSNMYAEAGKWDEASKVRELMKSRE 390
             Y+  +L +MY++ G  D+A K+ E+++ R+
Sbjct: 380 DMYVSGVLIDMYSKYGCLDKARKILEMLEKRD 411


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 155/416 (37%), Positives = 246/416 (59%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F  +  ++ VSWNA++A   QN  E K L L   M      P+  T
Sbjct: 357 MYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFT 416

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL ACA    L  G EIH RII+  +  D F+  AL DMY+KCG +  A+ + + ++
Sbjct: 417 YGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLA 476

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N +I G+S      E+   FS+M  +G+  D  ++   +  CANL  ++ GK+
Sbjct: 477 EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQ 536

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+K L +  +++++++D Y++ G +     IF+  P +D  +WN ++ GY   G 
Sbjct: 537 IHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGL 596

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A+ +FE M+ + V  +  +++A+L AC H GLVEKG  YF  M ++  + P   HY+
Sbjct: 597 GEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYS 656

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VD++GR+G +  A++LI+ +P E DA IW  LL  C+I+GNVE+   AA  +  L+P+
Sbjct: 657 CVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPE 716

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y+LLSN+YA AG W+E +K+R++M+    KK PGCSW++ + EV  F+V D+
Sbjct: 717 DSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDK 772



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 170/403 (42%), Gaps = 71/403 (17%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP-----IHNEF 55
           MY K S    A  +F  + +++ VSWNAM+  +A       A +L   MP     +   F
Sbjct: 86  MYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELF 145

Query: 56  P----------NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK 105
                      +  T   VL +C+       G +IH   ++ G + D+   +AL DMYAK
Sbjct: 146 DFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAK 205

Query: 106 C----------------------GCLNLAQNVFNISFRDEV------------------- 124
           C                      G L L  +     F  +V                   
Sbjct: 206 CCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDC 265

Query: 125 --------------SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170
                         SYN +IVGY+++    E+L +F  ++  G+  D VS  GA  ACA 
Sbjct: 266 SNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAV 325

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           +    +G ++HG++++    +++ VAN+ILD Y + G +  A  +F+ +  +D+ SWN +
Sbjct: 326 IKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAI 385

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           I  +   G  +  ++LF  M + G+  D  +Y ++L AC+    +  G +  + +    +
Sbjct: 386 IAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRM 445

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                    ++D+  + G+ME A KL   L  E     W A++
Sbjct: 446 GLDSFVGIALIDMYSKCGMMEKAEKLHDRL-AEQTVVSWNAII 487



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 148/358 (41%), Gaps = 79/358 (22%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T +++   C+    L PGK+ HAR+I       +F+TN L  MY KC  L  A  VF+ +
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGM 103

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEM-------------RL--LGMKHDVVSFMG 163
             RD VS+N ++ GY+   D   +  LF  M             R+  +G   D  +F  
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAV 163

Query: 164 AISACANLAAIKQGKEIHGVTIRK------------------------------------ 187
            + +C++L     G +IHG+ ++                                     
Sbjct: 164 VLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEM 223

Query: 188 --------HLHTH---------LFVANSILDFYTRSGRI-DLANKIFDCLPVKDSASWNT 229
                    LH H         + +  + LD Y +   + D +N++F+ LP  +  S+N 
Sbjct: 224 QKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNA 283

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS 289
           +I+GY    +   A+ +F  +++ G+G D VS      AC+    V KG     ++   S
Sbjct: 284 IIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACA----VIKGDLEGLQVHGLS 339

Query: 290 VKPTEMHYAC----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           +K       C    ++D+ G+ G + +A  + + + V  DA  W A++ A    GN E
Sbjct: 340 MKSLCQSNICVANAILDMYGKCGALVEACLVFEEM-VSRDAVSWNAIIAAHEQNGNEE 396


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 149/415 (35%), Positives = 256/415 (61%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     +   +F  + + +++ W+ M++ +AQ+    +A++L  +M      PN  T
Sbjct: 186 LYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFT 245

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +VL +CA    L+ GK++H  +++ GL+ ++F++NAL D+YAKCG L+ +  +F  + 
Sbjct: 246 FASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELP 305

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+EV++N +IVGY Q+ D  ++LSL+  M    ++   V++   + ACA+LAA++ G +
Sbjct: 306 NRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQ 365

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH ++++      + V N+++D Y + G I  A  +FD L  +D  SWN +I GY M G 
Sbjct: 366 IHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGL 425

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
           V  A+  F+ M+E     + +++++IL+ACS+ GL++ G+ YF  M  D  ++P   HY 
Sbjct: 426 VGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYT 485

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMV LLGR+G ++ AVKLI+ +P+EP+  +W ALLGAC I+ +V+LG  +A+ +  + PQ
Sbjct: 486 CMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQ 545

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               ++LLSN+YA   +W+  + VR+ MK++  KK PG SW++ +  V  F V D
Sbjct: 546 DEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGD 600



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 181/343 (52%), Gaps = 4/343 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A   F  IA K++VSW  MVA +A+N     +LQL  EM +    PN  T 
Sbjct: 86  YAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTF 145

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
             VL AC        GK +H  +++     DL++   L D+Y K G  N    VF  +  
Sbjct: 146 AGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPK 205

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
            D + ++ +I  Y+Q++   E++ LF +MR   +  +  +F   + +CA++  ++ GK++
Sbjct: 206 HDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQV 265

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++  L  ++FV+N+++D Y + GR+D + K+F  LP ++  +WNT+I+GY   G+ 
Sbjct: 266 HCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDG 325

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-C 299
           D A++L++ M E  V    V+Y ++L AC+    +E G +    +   ++   ++     
Sbjct: 326 DKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQ-IHSLSLKTIYDKDVVVGNA 384

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
           ++D+  + G +++A +L+ ++  E D   W A++    ++G V
Sbjct: 385 LIDMYAKCGSIKNA-RLVFDMLSERDEISWNAMISGYSMHGLV 426



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 144/305 (47%), Gaps = 1/305 (0%)

Query: 18  IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPG 77
           + ++N VS+  ++  + Q+    + + L   +       N    T +L            
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
             +HA I + G   + F+  AL D YA CG +N A+  F+ I+ +D VS+  ++  Y++ 
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               +SL LF+EMR++G   +  +F G + AC  L A   GK +HG  ++      L+V 
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
             +LD YT+ G  +   ++F+ +P  D   W+ +I  Y    +   A+ LF  MR   V 
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            +  ++ ++L +C+    ++ GK+    +    +         ++D+  + G +++++KL
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKL 300

Query: 317 IKNLP 321
              LP
Sbjct: 301 FMELP 305


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 158/415 (38%), Positives = 252/415 (60%), Gaps = 3/415 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVT 60
           YAK+ R  EA  LF  + E++  SW AM + + ++    +AL+L R M  H  F  N  T
Sbjct: 165 YAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFT 224

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           +++ L A A    L  GKEIH  I+R GL+ D  + +AL+DMY KCG +  A+++F+ + 
Sbjct: 225 MSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTV 284

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  +I  Y +     E  +LFS++   G+  +  +F G ++ACA+ AA + GK+
Sbjct: 285 DRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQ 344

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG   R       F A++++  YT+ G I  A ++F+ +P  D  SW +LI GY   G+
Sbjct: 345 VHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQ 404

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
            D A+  FE + + G   D ++++ +L+AC+H GLV+KG +YFD + +   +  T  HYA
Sbjct: 405 PDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYA 464

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C++DLL R+G +++A  +I  +P+EPD  +W +LLG CRI+GN++L   AAE LF ++P+
Sbjct: 465 CLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPE 524

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +   Y  L+N+YA AG W   ++VR++M +R   K PG SW++ + EV  F+V D
Sbjct: 525 NPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGLSWIEIKREVHVFLVGD 579



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 136/283 (48%), Gaps = 8/283 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA ++F    ++++VSW AM+  + +     +   L  ++     +PN  T
Sbjct: 266 MYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFT 325

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            + VL ACA       GK++H  + R G +   F  + L  MY KCG +  A+ VFN   
Sbjct: 326 FSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMP 385

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           R D VS+  LI GY+Q     E+L  F  +   G + D ++F+G +SAC +   + +G E
Sbjct: 386 RPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLE 445

Query: 180 IHGVTIRKHLHTHLFVANS-ILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGML 237
                  KH  TH     + ++D  +RSGR+  A  I D +P++ D   W +L+ G  + 
Sbjct: 446 YFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIH 505

Query: 238 GEVDTAIN----LFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
           G +  A      LFE   E+   Y  ++ I   TA   GG+ E
Sbjct: 506 GNLKLAKRAAEALFEIEPENPATYTTLANI-YATAGLWGGVAE 547



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 156/366 (42%), Gaps = 37/366 (10%)

Query: 6   SRPAEASYLFHNIAEKNIVSWNAMVANFAQN---RLELKALQLVREMPIHNEFPNSVTLT 62
           S+P   +  F + A+  +V       NF +      E K L+   ++  H + P++ T +
Sbjct: 34  SKPPIHNTFFKSGAKDELVKRLCKDNNFKEAIDILCEQKRLREAIQILDHVDRPSAATYS 93

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
            +L  C +   L  G ++HA     G    + ++N + DMY KC  L  A+ +F+ ++ R
Sbjct: 94  TLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEMAER 153

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-----------MKHD----VVSFMGAIS 166
           D  S+NI+I GY++     E+  LF +M               ++HD     +    A+ 
Sbjct: 154 DLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQ 213

Query: 167 ACAN-----------------LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
              N                 + ++  GKEIHG  +R  L     V +++ D Y + G I
Sbjct: 214 RHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSI 273

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
             A  IFD    +D  SW  +I  Y   G  +    LF  + + G+  +  ++  +L AC
Sbjct: 274 GEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNAC 333

Query: 270 SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIW 329
           +     E GK+    M      P+    + +V +  + G +++A ++   +P  PD   W
Sbjct: 334 ADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMP-RPDLVSW 392

Query: 330 GALLGA 335
            +L+  
Sbjct: 393 TSLISG 398


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 159/416 (38%), Positives = 251/416 (60%), Gaps = 2/416 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A  +F+++  K + SWNA++   AQN    KAL L  +M      P+  T+
Sbjct: 281 YAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTI 340

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++L A A    LR GKE+H  ++R GL  D F+  +L  +Y  CG  + A+ +F+ +  
Sbjct: 341 GSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEE 400

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  VS+N +I GYSQ     ++L LF ++   G +   ++ +  + AC+  +A++ GKE 
Sbjct: 401 KSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKET 460

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++  L   +FVA S +D Y +SG I  +  +FD L  KD ASWN +I  YG+ G+ 
Sbjct: 461 HCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDG 520

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYAC 299
           + +I LFE MR+ G   D  ++I ILT CSH GLVE+G KYF+EMQ    ++P   HYAC
Sbjct: 521 EESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYAC 580

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           ++D+LGRAG ++DA++L+  +P +PD+ +W +LL  CR +G +E+G   AE L  L+P++
Sbjct: 581 VMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKN 640

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
              Y+ LSN+YA +G+WD+  +VR+++K    +K+ GCSW++   +V  FV  D +
Sbjct: 641 VENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNL 696



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 121/438 (27%), Positives = 202/438 (46%), Gaps = 57/438 (13%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE--FPNS 58
           MY K      A  +FH +  +N+VSWN++++ F++N        ++ EM    E   P+ 
Sbjct: 75  MYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDI 134

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
            TL  VLP CAR   ++ G  IH   ++ GL+ D+ + N+L DMY+KCG L  AQ +F+ 
Sbjct: 135 ATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDK 194

Query: 119 SFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV----VSFMGAISACANLAA 173
           + R + VS+N +I G        E+ +LF EM+   M+ D+    V+ +  + AC  ++ 
Sbjct: 195 NNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQ---MQEDIEVNEVTVLNILPACLEISQ 251

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           ++  KE+HG +IR        VAN  +  Y + G +  A ++F  +  K   SWN LI G
Sbjct: 252 LRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGG 311

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK------------- 280
               G+   A+NL+  M   G+  D  +  ++L A +H   +  GK+             
Sbjct: 312 CAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEID 371

Query: 281 ----------------------YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
                                  FD M+  S     + +  M+    + GL EDA+ L +
Sbjct: 372 SFIGISLLSLYIHCGESSSARLLFDGMEEKS----SVSWNAMISGYSQNGLPEDALILFR 427

Query: 319 NL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC-GYYILLS--NMYAE 372
            L     +P      ++LGAC     + LG     H + LK       ++  S  +MYA+
Sbjct: 428 KLVSDGFQPSDIAVVSVLGACSQQSALRLG--KETHCYALKALLMEDVFVACSTIDMYAK 485

Query: 373 AGKWDEASKVRELMKSRE 390
           +G   E+  V + +K+++
Sbjct: 486 SGCIKESRSVFDGLKNKD 503



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 137/261 (52%), Gaps = 15/261 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y      + A  LF  + EK+ VSWNAM++ ++QN L   AL L R++      P+ + 
Sbjct: 381 LYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIA 440

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VL AC++   LR GKE H   ++  L  D+F+  +  DMYAK GC+  +++VF+ + 
Sbjct: 441 VVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLK 500

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
            +D  S+N +I  Y    D  ES+ LF  MR +G   D  +F+G ++ C++   +++G  
Sbjct: 501 NKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLK 560

Query: 178 -----KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
                +  HG+  +   +        ++D   R+GR+D A ++   +P + DS  W++L+
Sbjct: 561 YFNEMQNFHGIEPKLEHYA------CVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLL 614

Query: 232 LGYGMLGEVDTAINLFEAMRE 252
                 GE++    + E + E
Sbjct: 615 SFCRNFGELEIGQIVAEKLLE 635



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 155/323 (47%), Gaps = 28/323 (8%)

Query: 35  QNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDL 93
           +N L   A+ +  ++    EF  ++ T   V+ AC        G+ IH  +I+ GL  D+
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDV 66

Query: 94  FLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL- 151
           F+ NAL  MY K G ++ A  VF+ +  R+ VS+N +I G+S+     +   +  EM   
Sbjct: 67  FVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAG 126

Query: 152 -LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210
             G+  D+ + +  +  CA    ++ G  IHG+ ++  L   + V NS++D Y++ G + 
Sbjct: 127 EEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLT 186

Query: 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR-EDGVGYDPVSYIAILTAC 269
            A  +FD    K++ SWNT+I G    G +  A NLF  M+ ++ +  + V+ + IL AC
Sbjct: 187 EAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPAC 246

Query: 270 -----------SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
                       HG  +  G +Y DE+ A+            V    + G++  A ++  
Sbjct: 247 LEISQLRSLKELHGYSIRHGFQY-DELVANG----------FVAAYAKCGMLICAERVFY 295

Query: 319 NLPVEPDANIWGALLGACRIYGN 341
           ++  +   N W AL+G C   G+
Sbjct: 296 SMETKT-VNSWNALIGGCAQNGD 317


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 154/415 (37%), Positives = 253/415 (60%), Gaps = 1/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK  R  +A  +F  + ++NIVSW +M++ + QN L ++AL++  +M   N  P+ + 
Sbjct: 213 LYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIA 272

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +VL A      L  GK IH  +++ GL F+  L  +LT MYAKCG + +A++ F+ + 
Sbjct: 273 LVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQME 332

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             + + +N +I GY++    +E++ LF EM    ++ D ++   AI ACA + ++   K 
Sbjct: 333 IPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKW 392

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +     +      +FV  +++D + + G +DLA ++FD    KD   W+ +I+GYG+ G 
Sbjct: 393 MGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGR 452

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              AI+LF AM++ GV  + V+++ +LTAC+H GLVE+G + F  M+   ++    HYAC
Sbjct: 453 GQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYAC 512

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLLGR+G + +A   I  +P+EP  ++WGALLGAC+IY +V LG +AAE LF L P +
Sbjct: 513 VVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFN 572

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            G+Y+ LSN+YA +  WD  +KVR LM+ +   K+ G S ++   ++Q F V D+
Sbjct: 573 TGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDK 627



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 161/331 (48%), Gaps = 2/331 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F    E ++  WNA++  ++ +     A+++   M      P+  TL  VL AC+ 
Sbjct: 122 ARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSG 181

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
              L  GK +H +I R G   D+F+ N L  +YAKCG +  A+ VF  +  R+ VS+  +
Sbjct: 182 VPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSM 241

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY Q     E+L +F +MR   +K D ++ +  + A  ++  ++QGK IHG  ++  L
Sbjct: 242 ISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGL 301

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
                +  S+   Y + G++ +A   FD + + +   WN +I GY   G  + A+ LF+ 
Sbjct: 302 EFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQE 361

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M    +  D ++  + + AC+  G ++  K   D +     +        ++D+  + G 
Sbjct: 362 MISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGS 421

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           + D  + + +  ++ D  +W A++    ++G
Sbjct: 422 V-DLAREVFDRTLDKDVVVWSAMIVGYGLHG 451



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 156/344 (45%), Gaps = 44/344 (12%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILIVGYSQTS 137
           +IHA+++  GL    FL     +     G +  A+ VF+      V  +N +I GYS  +
Sbjct: 89  QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHN 148

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
              +++ ++S M+  G+  D  +    + AC+ +  ++ GK +HG   R    + +FV N
Sbjct: 149 FFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQN 208

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
            ++  Y + GR++ A  +F+ L  ++  SW ++I GYG  G    A+ +F  MR+  V  
Sbjct: 209 GLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKP 268

Query: 258 DPVSYIAILTACS-----------HGGLVEKG------------------------KKYF 282
           D ++ +++L A +           HG +V+ G                        + +F
Sbjct: 269 DWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFF 328

Query: 283 DEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIY 339
           D+M+     P  M +  M+    + G   +AV L + +    +  D+    + + AC   
Sbjct: 329 DQMEI----PNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQV 384

Query: 340 GNVELGAWAAEHLFMLKPQHCGYY-ILLSNMYAEAGKWDEASKV 382
           G+++L  W  +++   + ++  +    L +M+A+ G  D A +V
Sbjct: 385 GSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREV 428


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 159/416 (38%), Positives = 244/416 (58%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  ++ +++++WN M+  F  +    +A      M      P+  T
Sbjct: 274 MYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRAT 333

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T VL ACAR   L  GKEIHAR  + GL  D+   NAL +MY+K G +  A+ VF+ + 
Sbjct: 334 YTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP 393

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  L+  Y+      ES + F +M   G+K + +++M  + AC+N  A+K GKE
Sbjct: 394 KRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKE 453

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   ++  L   L V N+++  Y + G ++ A ++F+ + ++D  +WNTLI G G  G 
Sbjct: 454 IHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGR 513

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+  +E M+ +G+  +  +++ +L+AC    LVE+G++ F  M  D  + PTE HYA
Sbjct: 514 GLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYA 573

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+L RAG + +A  +I  +P++P A +WGALL ACRI+ NVE+G  AAEH   L+PQ
Sbjct: 574 CMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQ 633

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G Y+ LS +YA AG W + +K+R+ MK R  KK PG SW++   EV  FV  D+
Sbjct: 634 NAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQ 689



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 179/335 (53%), Gaps = 2/335 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YA      EA  LF   + K++VSWN M++ +A   L  +A  L   M      P+  T
Sbjct: 72  LYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFT 131

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L AC+    L  G+EIH R++  GL  D  + NAL  MYAKCG +  A+ VF+ ++
Sbjct: 132 FVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMA 191

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RDEVS+  L   Y+++    ESL  +  M    ++   +++M  +SAC +LAA+++GK+
Sbjct: 192 SRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQ 251

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +    H+ + V+ ++   Y + G    A ++F+CL  +D  +WNT+I G+   G+
Sbjct: 252 IHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQ 311

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           ++ A   F  M E+GV  D  +Y  +L+AC+  G + +GK+       D +         
Sbjct: 312 LEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNA 371

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
           ++++  +AG M+DA ++   +P + D   W  LLG
Sbjct: 372 LINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLLG 405



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 182/381 (47%), Gaps = 44/381 (11%)

Query: 51  IHNEFP--NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
           +H + P  +S     +L +C +   L  GK++H  I+R G+  ++++TN L  +YA CG 
Sbjct: 19  LHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGS 78

Query: 109 LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
           +N A+ +F+  S +  VS+N++I GY+      E+ +LF+ M+   ++ D  +F+  +SA
Sbjct: 79  VNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSA 138

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C++ A +  G+EIH   +   L     V N+++  Y + G +  A ++FD +  +D  SW
Sbjct: 139 CSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSW 198

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF----- 282
            TL   Y   G  + ++  + AM ++ V    ++Y+ +L+AC     +EKGK+       
Sbjct: 199 TTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVE 258

Query: 283 DEMQAD---SVKPTEMHYAC-----------------------MVDLLGRAGLMEDAVKL 316
            E  +D   S   T+M+  C                       M+     +G +E+A   
Sbjct: 259 SEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGT 318

Query: 317 IKNL---PVEPDANIWGALLGACRIYGNV----ELGAWAAEHLFMLKPQHCGYYILLSNM 369
              +    V PD   +  +L AC   G +    E+ A AA+   +   +   +   L NM
Sbjct: 319 FHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVR---FGNALINM 375

Query: 370 YAEAGKWDEASKVRELMKSRE 390
           Y++AG   +A +V + M  R+
Sbjct: 376 YSKAGSMKDARQVFDRMPKRD 396


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  308 bits (788), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 159/415 (38%), Positives = 245/415 (59%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F N+   +I+SW  M+  +AQ+    +A +L+ +M      PN++T
Sbjct: 173 MYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAIT 232

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L ACA    L+  K +H   +  GL  D+ +  AL  MYAK G ++ A+ VF+ + 
Sbjct: 233 YVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMK 292

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N++I  +++     E+  LF +M+  G K D + F+  ++ACA+  A++  K+
Sbjct: 293 VRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKK 352

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +   L   + V  +++  Y++SG ID A  +FD + V++  SWN +I G    G 
Sbjct: 353 IHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGL 412

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-KYFDEMQADSVKPTEMHYA 298
              A+ +F  M   GV  D V+++A+L+ACSH GLV++G+ +Y    Q   ++P   H  
Sbjct: 413 GQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCN 472

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAG + +A   I N+ V+PD   WGALLG+CR YGNVELG   A+    L P+
Sbjct: 473 CMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPK 532

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +   Y+LLSN+YAEAGKWD  S VR +M+ R  +K PG SW++  +++ DF+V D
Sbjct: 533 NAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVAD 587



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 207/423 (48%), Gaps = 51/423 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y +  R  EA  +F  + +K+  SWNAM+A + +++    A++L REM      PN+ T
Sbjct: 72  VYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGT 131

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
              +L ACA    L+ GKE+HA I   GL  D+ +  AL  MY KCG +N A+ +F N+ 
Sbjct: 132 YMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLM 191

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D +S+ ++I  Y+Q+ +  E+  L  +M   G K + ++++  ++ACA+  A+K  K 
Sbjct: 192 NHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKR 251

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +   L   + V  +++  Y +SG ID A  +FD + V+D  SWN +I  +   G 
Sbjct: 252 VHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGR 311

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK------------------- 280
              A +LF  M+ +G   D + +++IL AC+  G +E  KK                   
Sbjct: 312 GHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTA 371

Query: 281 ----------------YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP--- 321
                            FD M+  +V    + +  M+  L + GL +DA+++ + +    
Sbjct: 372 LVHMYSKSGSIDDARVVFDRMKVRNV----VSWNAMISGLAQHGLGQDALEVFRRMTAHG 427

Query: 322 VEPDANIWGALLGACRIYGNVELGA---WAAEHLFMLKP--QHCGYYILLSNMYAEAGKW 376
           V+PD   + A+L AC   G V+ G     A   ++ ++P   HC   +   ++   AG+ 
Sbjct: 428 VKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMV---DLLGRAGRL 484

Query: 377 DEA 379
            EA
Sbjct: 485 MEA 487



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 156/333 (46%), Gaps = 9/333 (2%)

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
             +S     VL  C +   L   K++H  II+  +  +  + N L  +Y +CG L  A+ 
Sbjct: 25  ITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARC 84

Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           VF+ +  +   S+N +I GY +     +++ LF EM   G++ +  ++M  + ACA+L+A
Sbjct: 85  VFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSA 144

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           +K GKE+H       L + + V  ++L  Y + G I+ A +IFD L   D  SW  +I  
Sbjct: 145 LKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGA 204

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
           Y   G    A  L   M ++G   + ++Y++IL AC+  G ++  K+         ++  
Sbjct: 205 YAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELD 264

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
                 +V +  ++G ++DA  +   + V  D   W  ++GA   +G    G  A +   
Sbjct: 265 VRVGTALVQMYAKSGSIDDARVVFDRMKVR-DVVSWNVMIGAFAEHGR---GHEAYDLFL 320

Query: 354 MLKPQHCG----YYILLSNMYAEAGKWDEASKV 382
            ++ + C      ++ + N  A AG  +   K+
Sbjct: 321 QMQTEGCKPDAIMFLSILNACASAGALEWVKKI 353



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 19/298 (6%)

Query: 133 YSQTSDC-SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           + QT++  SE++ +       G+  D   ++  +  C     +   K++H   I+  +  
Sbjct: 2   HVQTANTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQ 61

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
           +  V N++L  Y   GR+  A  +FD L  K  ASWN +I GY      + A+ LF  M 
Sbjct: 62  NAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMC 121

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
            +GV  +  +Y+ IL AC+    ++ GK+    ++   ++        ++ + G+ G + 
Sbjct: 122 HEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSIN 181

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY------YIL 365
           +A ++  NL +  D   W  ++GA    GN +       +  ML+ +  G+      Y+ 
Sbjct: 182 EARRIFDNL-MNHDIISWTVMIGAYAQSGNGK-----EAYRLMLQMEQEGFKPNAITYVS 235

Query: 366 LSNMYAEAG--KWDEASKVRELMKSREAKKNPGCSWVQ---TRDEVQDF-VVNDRMKT 417
           + N  A  G  KW +      L    E     G + VQ       + D  VV DRMK 
Sbjct: 236 ILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKV 293


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  308 bits (788), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 156/419 (37%), Positives = 254/419 (60%), Gaps = 2/419 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA       A  +F  ++E+N+ +WN+M A + ++    + ++L  EM   +   + VT
Sbjct: 168 MYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVT 227

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +VL AC R   L  G+ I+  +  KGL  +  L  +L DMYAKCG ++ A+ +F+ + 
Sbjct: 228 LVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMD 287

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V+++ +I GYSQ S C E+L LF EM+   +  + ++ +  +S+CA L A++ GK 
Sbjct: 288 RRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKW 347

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H    +K +   + +  +++DFY + G ++ + ++F  +PVK+  SW  LI G    G+
Sbjct: 348 VHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQ 407

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+  F  M E  V  + V++I +L+ACSH GLV++G+  F  M  D  ++P   HY 
Sbjct: 408 GKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYG 467

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGRAGL+E+A + IKN+P++P+A IW  LL +C+++ NVE+G  + + L +L+P 
Sbjct: 468 CMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPT 527

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKT 417
           H G YILLSN+YA  G+W++A KVR  MK +  KK PGCS ++    + +F   D + +
Sbjct: 528 HSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHS 586



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 182/346 (52%), Gaps = 5/346 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F  I E +  ++N M+  F   +   +A+ L +EM  ++  P+  T   +L  C+R
Sbjct: 77  AVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSR 136

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              L  G++IHA I++ G     F+ N L  MYA CG + +A+ VF+ +S R+  ++N +
Sbjct: 137 LQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSM 196

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
             GY+++ +  E + LF EM  L ++ D V+ +  ++AC  LA ++ G+ I+     K L
Sbjct: 197 FAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGL 256

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             +  +  S++D Y + G++D A ++FD +  +D  +W+ +I GY        A++LF  
Sbjct: 257 KGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHE 316

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M++  +  + ++ ++IL++C+  G +E GK     ++   +K T      ++D   + G 
Sbjct: 317 MQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGS 376

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           +E ++++   +PV+ +   W  L+      G    G  A E+ +++
Sbjct: 377 VESSIEVFGKMPVK-NVLSWTVLIQGLASNGQ---GKKALEYFYLM 418



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 167/373 (44%), Gaps = 56/373 (15%)

Query: 55  FP-NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC--GCLNL 111
           FP N  TL  +L  C     +R   EIHA +I+  L     +   L +  A      ++ 
Sbjct: 22  FPENPKTL--ILEQCKT---IRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDY 76

Query: 112 AQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170
           A ++F  I   D  +YNI+I G++      E++ LF EM    ++ D  +F   +  C+ 
Sbjct: 77  AVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSR 136

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           L A+ +G++IH + ++    +H FV N+++  Y   G +++A ++FD +  ++  +WN++
Sbjct: 137 LQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSM 196

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC--------------------- 269
             GY   G  +  + LF  M E  + +D V+ +++LTAC                     
Sbjct: 197 FAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGL 256

Query: 270 --------------SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
                         +  G V+  ++ FD+M    V    + ++ M+    +A    +A+ 
Sbjct: 257 KGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDV----VAWSAMISGYSQASRCREALD 312

Query: 316 LIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNM 369
           L   +    ++P+     ++L +C + G +E G W   H F+ K +      L   L + 
Sbjct: 313 LFHEMQKANIDPNEITMVSILSSCAVLGALETGKWV--HFFIKKKRMKLTVTLGTALMDF 370

Query: 370 YAEAGKWDEASKV 382
           YA+ G  + + +V
Sbjct: 371 YAKCGSVESSIEV 383


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  308 bits (788), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 162/454 (35%), Positives = 252/454 (55%), Gaps = 41/454 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEK----NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           YA+     EA  LF  + +     N++SWN M+A F  + L  +A+ +  +M +    P+
Sbjct: 190 YARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPD 249

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             T+++VLPA      L  G  IH  +I++GL  D  +++AL DMY KC C +    VF+
Sbjct: 250 GTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFD 309

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS---------- 166
            +   D  S N  I G S+      SL LF +++  GM+ +VVS+   I+          
Sbjct: 310 QMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDME 369

Query: 167 -------------------------ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201
                                    AC N+AA+  GK  H  ++R+ + T ++V ++++D
Sbjct: 370 ALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALID 429

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y + GRI  +   FD +P K+   WN +I GY M G+   A+ +F+ M+  G   D +S
Sbjct: 430 MYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIIS 489

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           +  +L+ACS  GL E+G  YF+ M +   ++    HYACMV LL RAG +E A  +I+ +
Sbjct: 490 FTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRM 549

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
           PV PDA +WGALL +CR++ NV LG  AAE LF L+P + G YILLSN+YA  G W+E +
Sbjct: 550 PVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVN 609

Query: 381 KVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +VR++MK++  +KNPGCSW++ +++V   +  D+
Sbjct: 610 RVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDK 643



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 160/346 (46%), Gaps = 37/346 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA +   A+A+ +   + E N+ S++ ++  F++      AL    +M      P++  L
Sbjct: 58  YANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVL 117

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR 121
            + + ACA    L+P +++H      G + D F+ ++L  MY KC  +  A  VF+  F 
Sbjct: 118 PSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFE 177

Query: 122 -DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS-------------- 166
            D VS++ L+  Y++     E+  LFSEM   G++ +++S+ G I+              
Sbjct: 178 PDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLM 237

Query: 167 ---------------------ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
                                A  +L  +  G  IHG  I++ L +   V+++++D Y +
Sbjct: 238 FLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGK 297

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
                  +++FD +   D  S N  I G    G+V++++ LF  +++ G+  + VS+ ++
Sbjct: 298 CSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSM 357

Query: 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR-AGLM 310
           +  CS  G   +  + F EMQ   VKP  +   C++   G  A LM
Sbjct: 358 IACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALM 403



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 4/242 (1%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEV-SYNILIVG 132
           L   ++ HA I++ GL  D  L   L   YA   C   A  V ++     V S++ LI  
Sbjct: 29  LSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYA 88

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           +S+      +LS FS+M   G+  D      A+ ACA L+A+K  +++HG+       + 
Sbjct: 89  FSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSD 148

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
            FV +S++  Y +  +I  A+++FD +   D  SW+ L+  Y   G VD A  LF  M +
Sbjct: 149 SFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGD 208

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
            GV  + +S+  ++   +H GL  +    F +M     +P       +  +L   G +ED
Sbjct: 209 SGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDG---TTISSVLPAVGDLED 265

Query: 313 AV 314
            V
Sbjct: 266 LV 267



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R   +   F  I  KN+V WNA++A +A +    +A+++   M    + P+ ++
Sbjct: 430 MYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIIS 489

Query: 61  LTNVLPACARGHFLRPG 77
            T VL AC++      G
Sbjct: 490 FTCVLSACSQSGLTEEG 506



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/175 (18%), Positives = 70/175 (40%), Gaps = 1/175 (0%)

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
           +  A++ Q ++ H   ++  L     +A  +L  Y  +     A  + D +P  +  S++
Sbjct: 24  STTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFS 83

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           TLI  +    +   A++ F  M   G+  D     + + AC+    ++  ++        
Sbjct: 84  TLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVS 143

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
                    + +V +  +   + DA ++   +  EPD   W AL+ A    G V+
Sbjct: 144 GFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM-FEPDVVSWSALVAAYARQGCVD 197


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  307 bits (787), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 159/416 (38%), Positives = 242/416 (58%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLV-REMPIHNEFPNSV 59
           MY+       A  +F  + +K +VSW  M+   AQ     +A++L  R M   N  PN V
Sbjct: 129 MYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEV 188

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL NVL ACAR   L   K IH  I   G    + L   L D+Y KCGC+ LA+++F+  
Sbjct: 189 TLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKA 248

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             ++  S+NI+I G+ + S+  E+L LF EM+  G+K D V+    + AC +L A++ GK
Sbjct: 249 QEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGK 308

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H    ++ +   + +  +++D Y + G I+ A ++F  +P KD  +W  LILG  M G
Sbjct: 309 WLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCG 368

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
           + + A+  F+ M   GV  D ++++ +L ACSH G V++G  +F+ M     ++PT  HY
Sbjct: 369 QAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHY 428

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
             +VD+LGRAG + +A +LIK++P+ PD  + G LLGACRI+GN+E    AA+ L  + P
Sbjct: 429 GGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDP 488

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            H G Y+LLSN+Y  + KW+EA + RELM  R  +K PGCS ++    V +FV  D
Sbjct: 489 YHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGD 544



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 171/373 (45%), Gaps = 9/373 (2%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F  I      + N+++       L  +AL   +EM +    P+  T  ++  +C  
Sbjct: 41  ARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRN 100

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
                 GK+IH    + G   D +  N L +MY+ CGCL  A+ VF+ +  +  VS+  +
Sbjct: 101 S---SEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATM 157

Query: 130 IVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           I  ++Q    +E++ LF   M+   +K + V+ +  ++ACA    +   K IH       
Sbjct: 158 IGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHG 217

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
              H+ +   ++D Y + G + LA  +FD    K+  SWN +I G+      + A+ LF 
Sbjct: 218 FGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFR 277

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            M+  G+  D V+  ++L AC+H G +E GK     ++   +         +VD+  + G
Sbjct: 278 EMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCG 337

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE--LGAWAAEHLFMLKPQHCGYYILL 366
            +E A+++   +P E D   W AL+    + G  E  L  +   H+  +KP    +  +L
Sbjct: 338 SIETAIQVFHEMP-EKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVL 396

Query: 367 SNMYAEAGKWDEA 379
           +   + AG  DE 
Sbjct: 397 AAC-SHAGFVDEG 408



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 161/355 (45%), Gaps = 48/355 (13%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYA--KCGCLNLAQNVFNISFRDEVSY--NILIVGY 133
           K+IHA+++R GL FD F  + +    +  + G L  A+ VF+    +  SY  N +I G 
Sbjct: 5   KQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFS-QIPNPTSYTCNSIIRGC 63

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           +  +   E+L  + EM + G+  D  +F     +C N +   +GK+IH  + +    +  
Sbjct: 64  TDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSS---EGKQIHCHSTKLGFASDT 120

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE-AMRE 252
           +  N++++ Y+  G +  A K+FD +  K   SW T+I  +    + + A+ LF+  M+ 
Sbjct: 121 YAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKS 180

Query: 253 DGVGYDPVSYIAILTACSHG---GLVEKGKKYFDEM---QADSVKPTEMHYACMV----- 301
           + V  + V+ + +LTAC+      +V++  +Y DE    +   +    M   C       
Sbjct: 181 ENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQL 240

Query: 302 --DLLGRA-------------GLMED-----AVKLIKNLP---VEPDANIWGALLGACRI 338
             DL  +A             G +ED     A+ L + +    ++ D     +LL AC  
Sbjct: 241 ARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTH 300

Query: 339 YGNVELGAWAAEHLFMLKPQ---HCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390
            G +ELG W   H ++ K +          L +MYA+ G  + A +V   M  ++
Sbjct: 301 LGALELGKWL--HAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKD 353


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  307 bits (787), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 166/450 (36%), Positives = 252/450 (56%), Gaps = 39/450 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +      A  +F  +  K  V WNAM++ +  + + ++A +L R M +     +  T 
Sbjct: 238 YVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTF 297

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNF----DLFLTNALTDMYAKCGCLNLAQNVF- 116
           T+VL ACA   F   GK +H +I R   NF     L + NAL  +Y+KCG + +A+ +F 
Sbjct: 298 TSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFD 357

Query: 117 NISFRDEVSYNILIVGYSQTSDC--------------------------------SESLS 144
           N+  +D VS+N ++ GY ++S C                                 ++L 
Sbjct: 358 NMKSKDVVSWNTILSGYVESS-CLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALK 416

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
           LF+ MR   +K    ++ GAISAC  L ++K GK++HG  ++          N+++  Y 
Sbjct: 417 LFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYA 476

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           R G +  AN +F  +P  DS SWN +I   G  G    A+ LF+ M  +G+  D +S++ 
Sbjct: 477 RCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLT 536

Query: 265 ILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
           +LTAC+H GLV++G +YF+ M+ D  + P E HY  ++DLLGRAG + +A  LIK +P E
Sbjct: 537 VLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFE 596

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVR 383
           P  +IW A+L  CR  G++ELGA AA+ LF + PQH G YILLSN Y+ AG+W +A++VR
Sbjct: 597 PTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVR 656

Query: 384 ELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +LM+ R  KK PGCSW++  ++V  FVV D
Sbjct: 657 KLMRDRGVKKEPGCSWIEAGNKVHVFVVGD 686



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 162/365 (44%), Gaps = 52/365 (14%)

Query: 2   YAKSSRPAEASYLFHNI--AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNS 58
           YA + R   A   F  +  A ++ V  NA+++ +A+      A+ + R +       P+ 
Sbjct: 98  YAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDD 157

Query: 59  VTLTNVLPACARGHF----LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC-------- 106
            + T +L A   GH     +R   ++   +++ G    L ++NAL  +Y KC        
Sbjct: 158 YSFTALLSAA--GHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRD 215

Query: 107 --------------------------GCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDC 139
                                     G +  A++VF  +  + +V +N +I GY  +   
Sbjct: 216 ARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMV 275

Query: 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH----THLFV 195
            E+  LF  M L  +  D  +F   +SACAN      GK +HG   R   +      L V
Sbjct: 276 VEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPV 335

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            N+++  Y++ G I +A +IFD +  KD  SWNT++ GY     +D A+ +FE M     
Sbjct: 336 NNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYK-- 393

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
             + +S++ +++   HGG  E   K F+ M+A+ VKP +  YA  +   G  G ++   +
Sbjct: 394 --NELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQ 451

Query: 316 LIKNL 320
           L  +L
Sbjct: 452 LHGHL 456



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 121/281 (43%), Gaps = 46/281 (16%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF----- 55
           +Y+K    A A  +F N+  K++VSWN +++ + ++    KA+++  EMP  NE      
Sbjct: 342 LYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVM 401

Query: 56  --------------------------PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
                                     P   T    + AC     L+ GK++H  +++ G 
Sbjct: 402 VSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGF 461

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVGYSQTSDCSESLSLFSE 148
                  NAL  MYA+CG +  A  +F +    D VS+N +I    Q     E+L LF  
Sbjct: 462 EGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDR 521

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQG-------KEIHGVTIRKHLHTHLFVANSILD 201
           M   G+  D +SF+  ++AC +   + +G       K   G+   +  +T L      +D
Sbjct: 522 MVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRL------ID 575

Query: 202 FYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGMLGEVD 241
              R+GRI  A  +   +P + + S W  ++ G    G+++
Sbjct: 576 LLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDME 616



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 109/222 (49%), Gaps = 13/222 (5%)

Query: 97  NALTDMYAKCGCLNLAQNVFNI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
            +L   YA  G L  A + F+    + RD V +N +I  Y++ S  + ++++F  +   G
Sbjct: 92  TSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 154 -MKHDVVSFMGAISACANLA--AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210
            ++ D  SF   +SA  +L   +++   ++    ++      L V+N+++  Y +   ++
Sbjct: 152 SLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALE 211

Query: 211 L---ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
               A K+ D +P KD+ +W T+++GY   G+V  A ++FE   E  V +D V + A+++
Sbjct: 212 ATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFE---EVDVKFD-VVWNAMIS 267

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
              H G+V +  + F  M  + V   E  +  ++     AG 
Sbjct: 268 GYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGF 309


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  307 bits (787), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 159/415 (38%), Positives = 252/415 (60%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F  + EKN++SW+AM+A +  +    KAL L R M      P+ +T
Sbjct: 175 MYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKIT 234

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L ++L AC+    L+ G+ IH  + + GL+ D F+  AL DMY KC  +  A+ +F+ + 
Sbjct: 235 LASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMP 294

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++ ++I GY++  + +ESL LF +MR  G+  D V+ +  + ACA L A+ + + 
Sbjct: 295 ERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKART 354

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I     RK     + +  +++D + + G ++ A +IFD +  K+  SW+ +I  YG  G+
Sbjct: 355 IDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ 414

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++LF  M   G+  + ++ +++L ACSH GLVE+G ++F  M  D SV+    HY 
Sbjct: 415 GRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYT 474

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGRAG +++A+KLI+++ VE D  +WGA LGACR + +V L   AA  L  L+PQ
Sbjct: 475 CVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQ 534

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + G+YILLSN+YA AG+W++ +K R+LM  R  KK PG +W++  ++   F V D
Sbjct: 535 NPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGD 589



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 174/342 (50%), Gaps = 2/342 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A +LF  + E+++V+W  M+  +A+     ++L L  +M      P+ V 
Sbjct: 74  MYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVA 133

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  V+ ACA+   +   + I   I RK    D+ L  A+ DMYAKCGC+  A+ +F+ + 
Sbjct: 134 MVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRME 193

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ +S++ +I  Y       ++L LF  M   GM  D ++    + AC++L  ++ G+ 
Sbjct: 194 EKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRL 253

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH +  +  L    FV  +++D Y +   I+ A  +FD +P +D  +W  +I GY   G 
Sbjct: 254 IHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGN 313

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + ++ LF+ MRE+GV  D V+ + ++ AC+  G + K +   D +Q    +   +    
Sbjct: 314 ANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTA 373

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           M+D+  + G +E A ++   +  E +   W A++ A   +G 
Sbjct: 374 MIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ 414



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 158/314 (50%), Gaps = 2/314 (0%)

Query: 29  MVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKG 88
           MV  FA+    +      RE+      P++ TL  V+ AC     L+ G+ IH  + + G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 89  LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
           L+ D F+  AL DMY KC  +  A+ +F+ +  RD V++ ++I GY++    +ESL LF 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           +MR  G+  D V+ +  + ACA L A+ + + I     RK     + +  +++D Y + G
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCG 180

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
            ++ A +IFD +  K+  SW+ +I  YG  G+   A++LF  M   G+  D ++  ++L 
Sbjct: 181 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 240

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           ACS    ++ G+     +    +       A +VD+ G+   +EDA  L   +P E D  
Sbjct: 241 ACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMP-ERDLV 299

Query: 328 IWGALLGACRIYGN 341
            W  ++G     GN
Sbjct: 300 TWTVMIGGYAECGN 313


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  307 bits (787), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 153/414 (36%), Positives = 245/414 (59%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     EA  +F  + +++ V+W  +++ ++Q+     AL    +M      PN  T
Sbjct: 104 MYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFT 163

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L++V+ A A       G ++H   ++ G + ++ + +AL D+Y + G ++ AQ VF+ + 
Sbjct: 164 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALE 223

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R++VS+N LI G+++ S   ++L LF  M   G +    S+     AC++   ++QGK 
Sbjct: 224 SRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKW 283

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+       F  N++LD Y +SG I  A KIFD L  +D  SWN+L+  Y   G 
Sbjct: 284 VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGF 343

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+  FE MR  G+  + +S++++LTACSH GL+++G  Y++ M+ D + P   HY  
Sbjct: 344 GKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVT 403

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLLGRAG +  A++ I+ +P+EP A IW ALL ACR++ N ELGA+AAEH+F L P  
Sbjct: 404 VVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDD 463

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G +++L N+YA  G+W++A++VR+ MK    KK P CSWV+  + +  FV ND
Sbjct: 464 PGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVAND 517



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 161/342 (47%), Gaps = 10/342 (2%)

Query: 49  MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
           +P    F N++     L  C     L  G+ +HA I++     D+ + N L +MYAKCG 
Sbjct: 56  IPADRRFYNTL-----LKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGS 110

Query: 109 LNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
           L  A+ VF  +  RD V++  LI GYSQ     ++L  F++M   G   +  +    I A
Sbjct: 111 LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKA 170

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
            A       G ++HG  ++    +++ V +++LD YTR G +D A  +FD L  ++  SW
Sbjct: 171 AAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSW 230

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           N LI G+      + A+ LF+ M  DG      SY ++  ACS  G +E+GK     M  
Sbjct: 231 NALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 290

Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAW 347
              K        ++D+  ++G + DA K+   L  + D   W +LL A   +G  +   W
Sbjct: 291 SGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRL-AKRDVVSWNSLLTAYAQHGFGKEAVW 349

Query: 348 AAEHL--FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
             E +    ++P    +  +L+   + +G  DE     ELMK
Sbjct: 350 WFEEMRRVGIRPNEISFLSVLTAC-SHSGLLDEGWHYYELMK 390


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  307 bits (786), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 154/414 (37%), Positives = 250/414 (60%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+      A  LF  +  +++VSW +M+  +AQN     AL L   M      PN  T
Sbjct: 118 MYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFT 177

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L++++  C        G++IHA   + G + ++F+ ++L DMYA+CG L  A  VF+ + 
Sbjct: 178 LSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLG 237

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++EVS+N LI GY++  +  E+L+LF  M+  G +    ++   +S+C+++  ++QGK 
Sbjct: 238 CKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKW 297

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++       +V N++L  Y +SG I  A K+FD L   D  S N++++GY   G 
Sbjct: 298 LHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGL 357

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A   F+ M   G+  + ++++++LTACSH  L+++GK YF  M+  +++P   HYA 
Sbjct: 358 GKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYAT 417

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLLGRAGL++ A   I+ +P+EP   IWGALLGA +++ N E+GA+AA+ +F L P +
Sbjct: 418 IVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSY 477

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G + LL+N+YA AG+W++ +KVR++MK    KK P CSWV+  + V  FV ND
Sbjct: 478 PGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVAND 531



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 136/266 (51%), Gaps = 1/266 (0%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P+      +L  C +   L+ GK +H  ++      DL + N+L  MYA+CG L  A+ +
Sbjct: 72  PDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRL 131

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ +  RD VS+  +I GY+Q    S++L LF  M   G + +  +    +  C  +A+ 
Sbjct: 132 FDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASY 191

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G++IH    +   H+++FV +S++D Y R G +  A  +FD L  K+  SWN LI GY
Sbjct: 192 NCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGY 251

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              GE + A+ LF  M+ +G      +Y A+L++CS  G +E+GK     +   S K   
Sbjct: 252 ARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVG 311

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNL 320
                ++ +  ++G + DA K+   L
Sbjct: 312 YVGNTLLHMYAKSGSIRDAEKVFDKL 337



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 105/257 (40%), Gaps = 43/257 (16%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           +  C  L  +K+GK +H   +  +    L + NS+L  Y R G ++ A ++FD +P +D 
Sbjct: 81  LKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDM 140

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK----- 279
            SW ++I GY        A+ LF  M  DG   +  +  +++  C +      G+     
Sbjct: 141 VSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHAC 200

Query: 280 --KY----------------------------FDEMQADSVKPTEMHYACMVDLLGRAGL 309
             KY                            FD++   +    E+ +  ++    R G 
Sbjct: 201 CWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKN----EVSWNALIAGYARKGE 256

Query: 310 MEDAVKLIKNLPVE---PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY-IL 365
            E+A+ L   +  E   P    + ALL +C   G +E G W   HL     +  GY    
Sbjct: 257 GEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNT 316

Query: 366 LSNMYAEAGKWDEASKV 382
           L +MYA++G   +A KV
Sbjct: 317 LLHMYAKSGSIRDAEKV 333


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  307 bits (786), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 163/416 (39%), Positives = 254/416 (61%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YA       A  LF  + ++N+  WN ++  +A++     A+QL R M  +   P++ T
Sbjct: 106 LYAACGLVGHARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFT 165

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
               L ACA    L  G+E+H R++      D+F+   L DMYAKCGC++ A+ VF+ I 
Sbjct: 166 YPLALKACAALLDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIR 225

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V +N +I  Y Q     E+LSL  +M   G+   + + +  ISA A+ AA+ +G+E
Sbjct: 226 VRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRE 285

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG   R+       +  S++D Y +SG + +A  +F+ L  ++  SWN +I GYGM G 
Sbjct: 286 LHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGH 345

Query: 240 VDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
            D A+ LF  MR E  V  D ++++ +L+AC+HGG+V++ K++F  M    S+KPT  H+
Sbjct: 346 FDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHF 405

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C+VD+LG AG  E+A  LIK +P++PD+ IWGALL  C+I+ NVELG  A + L  L+P
Sbjct: 406 TCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEP 465

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +  G Y+LLSN+YA++GKW++A++VR+LM +R  KK  GCSW++ + +   F+V D
Sbjct: 466 EDAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGD 521



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 172/368 (46%), Gaps = 49/368 (13%)

Query: 56  PNSVT-LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
           PNS    T+VL +C     L  G+++H R++  GL  D  L   L D+YA CG +  A+ 
Sbjct: 59  PNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARR 118

Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           +F+ +  R+   +N+LI  Y++      ++ L+  M   G++ D  ++  A+ ACA L  
Sbjct: 119 LFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLD 178

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           ++ G+E+H   +  H    +FV   ++D Y + G +D A  +FD + V+DS  WN++I  
Sbjct: 179 LETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAA 238

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY--------FD-- 283
           YG  G    A++L   M  +GVG    + ++ ++A +    + +G++         FD  
Sbjct: 239 YGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQ 298

Query: 284 --------EMQADS-------------VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
                   +M A S             +K   + +  M+   G  G  ++A+KL   + V
Sbjct: 299 DKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRV 358

Query: 323 E----PDANIWGALLGACRIYGNVELGAWAAEHLFML-------KPQHCGYYILLSNMYA 371
           E    PD   +  +L AC   G V+     A+  F L       KP    ++  L ++  
Sbjct: 359 EAQVTPDNITFVGVLSACNHGGMVK----EAKEFFGLMVDVYSIKPT-VQHFTCLVDVLG 413

Query: 372 EAGKWDEA 379
            AG+++EA
Sbjct: 414 HAGRFEEA 421


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  307 bits (786), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 162/454 (35%), Positives = 252/454 (55%), Gaps = 41/454 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEK----NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           YA+     EA  LF  + +     N++SWN M+A F  + L  +A+ +  +M +    P+
Sbjct: 190 YARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPD 249

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             T+++VLPA      L  G  IH  +I++GL  D  +++AL DMY KC C +    VF+
Sbjct: 250 GTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFD 309

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS---------- 166
            +   D  S N  I G S+      SL LF +++  GM+ +VVS+   I+          
Sbjct: 310 QMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIE 369

Query: 167 -------------------------ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201
                                    AC N+AA+  GK  H  ++R+ + T ++V ++++D
Sbjct: 370 ALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALID 429

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y + GRI  +   FD +P K+   WN +I GY M G+   A+ +F+ M+  G   D +S
Sbjct: 430 MYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIIS 489

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           +  +L+ACS  GL E+G  YF+ M +   ++    HYACMV LL RAG +E A  +I+ +
Sbjct: 490 FTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRM 549

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
           PV PDA +WGALL +CR++ NV LG  AAE LF L+P + G YILLSN+YA  G W+E +
Sbjct: 550 PVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVN 609

Query: 381 KVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +VR++MK++  +KNPGCSW++ +++V   +  D+
Sbjct: 610 RVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDK 643



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 160/346 (46%), Gaps = 37/346 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA +   A+A+ +   + E N+ S++ ++  F++      AL    +M      P++  L
Sbjct: 58  YANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVL 117

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR 121
            + + ACA    L+P +++H      G + D F+ ++L  MY KC  +  A  VF+  F 
Sbjct: 118 PSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFE 177

Query: 122 -DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS-------------- 166
            D VS++ L+  Y++     E+  LFSEM   G++ +++S+ G I+              
Sbjct: 178 PDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLM 237

Query: 167 ---------------------ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
                                A  +L  +  G  IHG  I++ L +   V+++++D Y +
Sbjct: 238 FLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGK 297

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
                  +++FD +   D  S N  I G    G+V++++ LF  +++ G+  + VS+ ++
Sbjct: 298 CSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSM 357

Query: 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR-AGLM 310
           +  CS  G   +  + F EMQ   VKP  +   C++   G  A LM
Sbjct: 358 IACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALM 403



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 4/242 (1%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEV-SYNILIVG 132
           L   ++ HA I++ GL  D  L   L   YA   C   A  V ++     V S++ LI  
Sbjct: 29  LSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYA 88

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           +S+      +LS FS+M   G+  D      A+ ACA L+A+K  +++HG+       + 
Sbjct: 89  FSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSD 148

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
            FV +S++  Y +  +I  A+++FD +   D  SW+ L+  Y   G VD A  LF  M +
Sbjct: 149 SFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGD 208

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
            GV  + +S+  ++   +H GL  +    F +M     +P       +  +L   G +ED
Sbjct: 209 SGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDG---TTISSVLPAVGDLED 265

Query: 313 AV 314
            V
Sbjct: 266 LV 267



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R   +   F  I  KN+V WNA++A +A +    +A+++   M    + P+ ++
Sbjct: 430 MYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIIS 489

Query: 61  LTNVLPACARGHFLRPG 77
            T VL AC++      G
Sbjct: 490 FTCVLSACSQSGLTEEG 506



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/175 (18%), Positives = 70/175 (40%), Gaps = 1/175 (0%)

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
           +  A++ Q ++ H   ++  L     +A  +L  Y  +     A  + D +P  +  S++
Sbjct: 24  STTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFS 83

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           TLI  +    +   A++ F  M   G+  D     + + AC+    ++  ++        
Sbjct: 84  TLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVS 143

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
                    + +V +  +   + DA ++   +  EPD   W AL+ A    G V+
Sbjct: 144 GFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM-FEPDVVSWSALVAAYARQGCVD 197


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 166/431 (38%), Positives = 252/431 (58%), Gaps = 18/431 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNI----VSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           Y++  R  +A  LF  + E+ I    V+W+A ++ +AQ  L  +AL + R+M      PN
Sbjct: 305 YSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF-------DLFLTNALTDMYAKCGCLN 110
            VTL +VL  CA    L  GKEIH   I+  ++        +  + N L DMYAKC  ++
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVD 424

Query: 111 LAQNVFNI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFMGAI 165
            A+ +F+      RD V++ ++I GYSQ  D +++L L SEM       + +  +   A+
Sbjct: 425 TARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484

Query: 166 SACANLAAIKQGKEIHGVTIRKHLH-THLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
            ACA+LAA++ GK+IH   +R   +   LFV+N ++D Y + G I  A  +FD +  K+ 
Sbjct: 485 VACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNE 544

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            +W +L+ GYGM G  + A+ +F+ MR  G   D V+ + +L ACSH G++++G +YF+ 
Sbjct: 545 VTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR 604

Query: 285 MQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           M+    V P   HYAC+VDLLGRAG +  A++LI+ +P+EP   +W A L  CRI+G VE
Sbjct: 605 MKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVE 664

Query: 344 LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTR 403
           LG +AAE +  L   H G Y LLSN+YA AG+W + +++R LM+ +  KK PGCSWV+  
Sbjct: 665 LGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGI 724

Query: 404 DEVQDFVVNDR 414
                F V D+
Sbjct: 725 KGTTTFFVGDK 735



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 188/394 (47%), Gaps = 54/394 (13%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF---PN 57
           MY++    ++A  +F  ++  ++VSWN+++ ++A+      AL++   M   NEF   P+
Sbjct: 171 MYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMT--NEFGCRPD 228

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF- 116
           ++TL NVLP CA       GK++H   +   +  ++F+ N L DMYAKCG ++ A  VF 
Sbjct: 229 NITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFS 288

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI----------- 165
           N+S +D VS+N ++ GYSQ     +++ LF +M+   +K DVV++  AI           
Sbjct: 289 NMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYE 348

Query: 166 ------------------------SACANLAAIKQGKEIH------GVTIRKHLH-THLF 194
                                   S CA++ A+  GKEIH       + +RK+ H     
Sbjct: 349 ALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENM 408

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVK--DSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           V N ++D Y +  ++D A  +FD L  K  D  +W  +I GY   G+ + A+ L   M E
Sbjct: 409 VINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468

Query: 253 DGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-CMVDLLGRAGL 309
           +     P ++     L AC+    +  GK+       +      +  + C++D+  + G 
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGS 528

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           + DA  +  N+  + +   W +L+    ++G  E
Sbjct: 529 ISDARLVFDNMMAKNEVT-WTSLMTGYGMHGYGE 561



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 146/279 (52%), Gaps = 2/279 (0%)

Query: 19  AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78
           ++  +  WN+++ ++  N    K L L   M   +  P++ T   V  AC     +R G+
Sbjct: 88  SDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGE 147

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
             HA  +  G   ++F+ NAL  MY++C  L+ A+ VF+ +S  D VS+N +I  Y++  
Sbjct: 148 SAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLG 207

Query: 138 DCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               +L +FS M    G + D ++ +  +  CA+L     GK++H   +   +  ++FV 
Sbjct: 208 KPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVG 267

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N ++D Y + G +D AN +F  + VKD  SWN ++ GY  +G  + A+ LFE M+E+ + 
Sbjct: 268 NCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIK 327

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
            D V++ A ++  +  GL  +      +M +  +KP E+
Sbjct: 328 MDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEV 366



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 126/270 (46%), Gaps = 6/270 (2%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV---FNISFRDEVSYNILIVGYS 134
           K IH +++  G+   L LT+ L   Y   GCL+ A ++   F  S      +N LI  Y 
Sbjct: 45  KLIHQKLLSFGI-LTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYG 103

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
                ++ L LF  M  L    D  +F     AC  +++++ G+  H +++     +++F
Sbjct: 104 DNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVF 163

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM-RED 253
           V N+++  Y+R   +  A K+FD + V D  SWN++I  Y  LG+   A+ +F  M  E 
Sbjct: 164 VGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEF 223

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
           G   D ++ + +L  C+  G    GK+         +        C+VD+  + G+M++A
Sbjct: 224 GCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEA 283

Query: 314 VKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             +  N+ V+ D   W A++      G  E
Sbjct: 284 NTVFSNMSVK-DVVSWNAMVAGYSQIGRFE 312



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK    ++A  +F N+  KN V+W +++  +  +    +AL +  EM       + VT
Sbjct: 522 MYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVT 581

Query: 61  LTNVLPACARGHFLRPGKEIHARI 84
           L  VL AC+    +  G E   R+
Sbjct: 582 LLVVLYACSHSGMIDQGMEYFNRM 605


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 153/414 (36%), Positives = 245/414 (59%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     EA  +F  + +++ V+W  +++ ++Q+     AL    +M      PN  T
Sbjct: 104 MYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFT 163

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L++V+ A A       G ++H   ++ G + ++ + +AL D+Y + G ++ AQ VF+ + 
Sbjct: 164 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALE 223

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R++VS+N LI G+++ S   ++L LF  M   G +    S+     AC++   ++QGK 
Sbjct: 224 SRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKW 283

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+       F  N++LD Y +SG I  A KIFD L  +D  SWN+L+  Y   G 
Sbjct: 284 VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGF 343

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+  FE MR  G+  + +S++++LTACSH GL+++G  Y++ M+ D + P   HY  
Sbjct: 344 GKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVT 403

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLLGRAG +  A++ I+ +P+EP A IW ALL ACR++ N ELGA+AAEH+F L P  
Sbjct: 404 VVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDD 463

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G +++L N+YA  G+W++A++VR+ MK    KK P CSWV+  + +  FV ND
Sbjct: 464 PGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVAND 517



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 161/342 (47%), Gaps = 10/342 (2%)

Query: 49  MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
           +P    F N++     L  C     L  G+ +HA I++     D+ + N L +MYAKCG 
Sbjct: 56  IPADRRFYNTL-----LKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGS 110

Query: 109 LNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
           L  A+ VF  +  RD V++  LI GYSQ     ++L  F++M   G   +  +    I A
Sbjct: 111 LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKA 170

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
            A       G ++HG  ++    +++ V +++LD YTR G +D A  +FD L  ++  SW
Sbjct: 171 AAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSW 230

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           N LI G+      + A+ LF+ M  DG      SY ++  ACS  G +E+GK     M  
Sbjct: 231 NALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 290

Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAW 347
              K        ++D+  ++G + DA K+   L  + D   W +LL A   +G  +   W
Sbjct: 291 SGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRL-AKRDVVSWNSLLTAYAQHGFGKEAVW 349

Query: 348 AAEHL--FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
             E +    ++P    +  +L+   + +G  DE     ELMK
Sbjct: 350 WFEEMRRVGIRPNEISFLSVLTAC-SHSGLLDEGWHYYELMK 390


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 156/416 (37%), Positives = 250/416 (60%), Gaps = 3/416 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK    + A  +FH I  K + SWNA++   AQ+     +L    +M I    P+S T+
Sbjct: 190 YAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTV 249

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++L AC++   LR GKE+H  IIR  L  DLF+  ++  +Y  CG L   Q +F+ +  
Sbjct: 250 CSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 309

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  VS+N +I GY Q      +L +F +M L G++   +S M    AC+ L +++ G+E 
Sbjct: 310 KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 369

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++  L    F+A S++D Y ++G I  ++K+F+ L  K +ASWN +I+GYG+ G  
Sbjct: 370 HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLA 429

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             AI LFE M+  G   D ++++ +LTAC+H GL+ +G +Y D+M++   +KP   HYAC
Sbjct: 430 KEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYAC 489

Query: 300 MVDLLGRAGLMEDAVKLI-KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           ++D+LGRAG ++ A++++ + +  E D  IW +LL +CRI+ N+E+G   A  LF L+P+
Sbjct: 490 VIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPE 549

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y+LLSN+YA  GKW++  KVR+ M     +K+ GCSW++   +V  FVV +R
Sbjct: 550 KPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGER 605



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/435 (28%), Positives = 194/435 (44%), Gaps = 49/435 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE--FPNS 58
           MY+K      A  +F     KN+VSWN MV  F+          ++R+M    E    + 
Sbjct: 86  MYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADE 145

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           VT+ N +P C    FL   KE+H   +++   ++  + NA    YAKCG L+ AQ VF+ 
Sbjct: 146 VTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHG 205

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           I  +   S+N LI G++Q++D   SL    +M++ G+  D  +    +SAC+ L +++ G
Sbjct: 206 IRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLG 265

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           KE+HG  IR  L   LFV  S+L  Y   G +     +FD +  K   SWNT+I GY   
Sbjct: 266 KEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQN 325

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACS--------------------------- 270
           G  D A+ +F  M   G+    +S + +  ACS                           
Sbjct: 326 GFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIA 385

Query: 271 --------HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
                     G + +  K F+ ++  S       +  M+   G  GL ++A+KL + +  
Sbjct: 386 CSLIDMYAKNGSITQSSKVFNGLKEKSTAS----WNAMIMGYGIHGLAKEAIKLFEEMQR 441

Query: 323 ---EPDANIWGALLGACRIYGNVELGAWAAEHL---FMLKPQHCGYYILLSNMYAEAGKW 376
               PD   +  +L AC   G +  G    + +   F LKP +  +Y  + +M   AG+ 
Sbjct: 442 TGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKP-NLKHYACVIDMLGRAGQL 500

Query: 377 DEASKVRELMKSREA 391
           D+A +V     S EA
Sbjct: 501 DKALRVVAEEMSEEA 515



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 140/267 (52%), Gaps = 7/267 (2%)

Query: 21  KNIVSWNAMVANFAQNRLELKALQLVREMPIHNE----FPNSVTLTNVLPACARGHFLRP 76
           +N VSWN+M+  F+ N    ++  L+ EM   N      P+  TL  VLP CAR   +  
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRDEVSYNILIVGYSQ 135
           GK +H   ++  L+ +L L NAL DMY+KCGC+  AQ +F + + ++ VS+N ++ G+S 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 136 TSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
             D   +  +  +M   G  +K D V+ + A+  C + + +   KE+H  ++++    + 
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE 180

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
            VAN+ +  Y + G +  A ++F  +  K   SWN LI G+    +   +++    M+  
Sbjct: 181 LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKIS 240

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKK 280
           G+  D  +  ++L+ACS    +  GK+
Sbjct: 241 GLLPDSFTVCSLLSACSKLKSLRLGKE 267



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 1/129 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+    ++S +F+ + EK+  SWNAM+  +  + L  +A++L  EM      P+ +T
Sbjct: 391 MYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLT 450

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
              VL AC     +  G     ++    GL  +L     + DM  + G L+ A  V    
Sbjct: 451 FLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEE 510

Query: 120 FRDEVSYNI 128
             +E    I
Sbjct: 511 MSEEADVGI 519


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 148/411 (36%), Positives = 246/411 (59%), Gaps = 2/411 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           E+  LF  + E++ +SW  M+    QN LE +AL + REM +     +  T  +VL AC 
Sbjct: 222 ESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACG 281

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
               L  GK+IHA +IR     ++F+ +AL DMY+KC  +  A+ VF  +  ++ +S+  
Sbjct: 282 SLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTA 341

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           ++VGY Q     E++ +F EM+  G++ D  +    IS+CANLA++++G + H   +   
Sbjct: 342 MLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSG 401

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L + + V+N+++  Y + G  + ++++F  + ++D  SW  L+ GY   G+ +  I LFE
Sbjct: 402 LISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFE 461

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRA 307
            M   G+  D V++I +L+ACS  GLVEKG +YF+ M +   + P   H  C++DLLGRA
Sbjct: 462 RMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRA 521

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           G +E+A   I N+P  PD   W  LL +CR++G++E+G WAA+ L  L+PQ+   Y+LLS
Sbjct: 522 GRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLS 581

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
           ++YA  GKWD+ +++R  M+ +  +K PG SW++ + +V  F  +D+   F
Sbjct: 582 SLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPF 632



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 191/402 (47%), Gaps = 36/402 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSV 59
           +Y+K    ++   +F+ +  ++ VSWN  ++ +A       A+++ + M        N +
Sbjct: 80  VYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRI 139

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK-------------- 105
           T + +L  C++   +  G++I+ +I++ G   D+F+ + L DMY K              
Sbjct: 140 TFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEM 199

Query: 106 -----------------CGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
                            CG +  +Q +F  +  RD +S+ I+I G  Q     E+L +F 
Sbjct: 200 PERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFR 259

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           EMRL G   D  +F   ++AC +L A+ +GK+IH   IR     ++FV ++++D Y++  
Sbjct: 260 EMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCR 319

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
            I  A  +F  +P K+  SW  +++GYG  G  + A+ +F  M+ +GV  D  +  ++++
Sbjct: 320 SIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVIS 379

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           +C++   +E+G ++        +         ++ L G+ G  E++ +L   + +  + +
Sbjct: 380 SCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVS 439

Query: 328 IWGALLGACRIYG--NVELGAWAAEHLFMLKPQHCGYYILLS 367
            W ALL     +G  N  +G +       LKP    +  +LS
Sbjct: 440 -WTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLS 480



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  + +KN++SW AM+  + QN    +A+++  EM  +   P+  T
Sbjct: 314 MYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFT 373

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+ +CA    L  G + H R +  GL   + ++NAL  +Y KCG    +  +F  ++
Sbjct: 374 LGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMN 433

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RDEVS+  L+ GY+Q    +E++ LF  M   G+K D V+F+G +SAC+    +++G +
Sbjct: 434 IRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQ 493

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
                I++H +   +     I+D   R+GR++ A    + +P   D   W TL+
Sbjct: 494 YFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLL 547



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 140/322 (43%), Gaps = 67/322 (20%)

Query: 92  DLFLTNALTDMYAKCGCLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSESLSLFSEM- 149
           +LF  N +  +Y+K G L+  Q +FN+  FRD VS+N+ I GY+    CS+++ ++  M 
Sbjct: 70  NLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLML 129

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
           +   M  + ++F   +  C+    +  G++I+G  ++    + +FV + ++D YT+ G I
Sbjct: 130 KDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLI 189

Query: 210 DLANKIFDCLP-------------------------------VKDSASWNTLILGYGMLG 238
             A + FD +P                                +DS SW  +I G    G
Sbjct: 190 YDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNG 249

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM------------- 285
               A+++F  MR  G   D  ++ ++LTAC     + +GK+    +             
Sbjct: 250 LEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGS 309

Query: 286 -------QADSVKPTE-----------MHYACMVDLLGRAGLMEDAVKLIKNLP---VEP 324
                  +  S+K  E           + +  M+   G+ G  E+AVK+   +    VEP
Sbjct: 310 ALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEP 369

Query: 325 DANIWGALLGACRIYGNVELGA 346
           D    G+++ +C    ++E GA
Sbjct: 370 DDFTLGSVISSCANLASLEEGA 391



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 2/112 (1%)

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C       Q K++H + ++       F++N+++  Y + G +  A+ +FD +P  +  SW
Sbjct: 15  CCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSW 74

Query: 228 NTLILGYGMLGEVDTAINLFEAMR-EDGVGYD-PVSYIAILTACSHGGLVEK 277
           NT++  Y  LG +     +F  M   DGV ++  +S  A   +CS    V K
Sbjct: 75  NTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYK 126


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 156/416 (37%), Positives = 250/416 (60%), Gaps = 3/416 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK    + A  +FH I  K + SWNA++   AQ+     +L    +M I    P+S T+
Sbjct: 440 YAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTV 499

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++L AC++   LR GKE+H  IIR  L  DLF+  ++  +Y  CG L   Q +F+ +  
Sbjct: 500 CSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 559

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  VS+N +I GY Q      +L +F +M L G++   +S M    AC+ L +++ G+E 
Sbjct: 560 KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 619

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++  L    F+A S++D Y ++G I  ++K+F+ L  K +ASWN +I+GYG+ G  
Sbjct: 620 HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLA 679

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             AI LFE M+  G   D ++++ +LTAC+H GL+ +G +Y D+M++   +KP   HYAC
Sbjct: 680 KEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYAC 739

Query: 300 MVDLLGRAGLMEDAVKLI-KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           ++D+LGRAG ++ A++++ + +  E D  IW +LL +CRI+ N+E+G   A  LF L+P+
Sbjct: 740 VIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPE 799

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y+LLSN+YA  GKW++  KVR+ M     +K+ GCSW++   +V  FVV +R
Sbjct: 800 KPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGER 855



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 148/286 (51%), Gaps = 7/286 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE----FPN 57
           Y       +A  LF  + E+N+VSWN+M+  F+ N    ++  L+ EM   N      P+
Sbjct: 232 YGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPD 291

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             TL  VLP CAR   +  GK +H   ++  L+ +L L NAL DMY+KCGC+  AQ +F 
Sbjct: 292 VATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFK 351

Query: 118 I-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAI 174
           + + ++ VS+N ++ G+S   D   +  +  +M   G  +K D V+ + A+  C + + +
Sbjct: 352 MNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL 411

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
              KE+H  ++++    +  VAN+ +  Y + G +  A ++F  +  K   SWN LI G+
Sbjct: 412 PSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGH 471

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
               +   +++    M+  G+  D  +  ++L+ACS    +  GK+
Sbjct: 472 AQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE 517



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 157/347 (45%), Gaps = 17/347 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           MYA    P ++ ++F  +  KN+  WNA+++++++N L  + L+   EM    +  P+  
Sbjct: 129 MYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHF 188

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI- 118
           T   V+ ACA    +  G  +H  +++ GL  D+F+ NAL   Y   G +  A  +F+I 
Sbjct: 189 TYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIM 248

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL----GMKHDVVSFMGAISACANLAAI 174
             R+ VS+N +I  +S      ES  L  EM           DV + +  +  CA    I
Sbjct: 249 PERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREI 308

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             GK +HG  ++  L   L + N+++D Y++ G I  A  IF     K+  SWNT++ G+
Sbjct: 309 GLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGF 368

Query: 235 GMLGEVDTAINLFEAMREDG--VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
              G+     ++   M   G  V  D V+ +  +  C H   +   K    E+   S+K 
Sbjct: 369 SAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLK----ELHCYSLKQ 424

Query: 293 ----TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                E+     V    + G +  A ++   +  +   N W AL+G 
Sbjct: 425 EFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKT-VNSWNALIGG 470



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 125/264 (47%), Gaps = 15/264 (5%)

Query: 30  VANFAQNRLELKALQLVREMPIHNEFPNSV------TLTNVLPACARGHFLRPGKEIHAR 83
           ++NF +     K+ + V+E    +E  +         L  +L A  +   +  G++IH  
Sbjct: 50  ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQL 109

Query: 84  II--RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCS 140
           +    +  N D+  T  +T MYA CG  + ++ VF+ +  ++   +N +I  YS+     
Sbjct: 110 VSGSTRLRNDDVLCTRIIT-MYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYD 168

Query: 141 ESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
           E L  F EM     +  D  ++   I ACA ++ +  G  +HG+ ++  L   +FV N++
Sbjct: 169 EVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNAL 228

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF-EAMREDGVGY- 257
           + FY   G +  A ++FD +P ++  SWN++I  +   G  + +  L  E M E+G G  
Sbjct: 229 VSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAF 288

Query: 258 --DPVSYIAILTACSHGGLVEKGK 279
             D  + + +L  C+    +  GK
Sbjct: 289 MPDVATLVTVLPVCAREREIGLGK 312



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 1/129 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+    ++S +F+ + EK+  SWNAM+  +  + L  +A++L  EM      P+ +T
Sbjct: 641 MYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLT 700

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
              VL AC     +  G     ++    GL  +L     + DM  + G L+ A  V    
Sbjct: 701 FLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEE 760

Query: 120 FRDEVSYNI 128
             +E    I
Sbjct: 761 MSEEADVGI 769


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 155/416 (37%), Positives = 243/416 (58%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F ++  ++ VSWNA++A   QN   +K L L   M      P+  T
Sbjct: 384 MYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFT 443

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +V+ ACA    L  G EIH RI++ G+  D F+ +AL DMY KCG L  A+ + + + 
Sbjct: 444 YGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLE 503

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N +I G+S       +   FS+M  +G+  D  ++   +  CAN+A I+ GK+
Sbjct: 504 EKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQ 563

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   ++ +LH+ +++A++++D Y++ G +  +  +F+  P +D  +W+ +I  Y   G 
Sbjct: 564 IHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGH 623

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + AI LFE M+   V  +   +I++L AC+H G V+KG  YF  MQ+   + P   HY+
Sbjct: 624 GEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYS 683

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGR+  + +A+KLI+++  E D  IW  LL  C++ GNVE+   A   L  L PQ
Sbjct: 684 CMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQ 743

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y+LL+N+YA  G W E +K+R +MK+ + KK PGCSW++ RDEV  F+V D+
Sbjct: 744 DSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDK 799



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 195/427 (45%), Gaps = 38/427 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  +   A  +F  + E+N+V W+A++A + QN   ++ L+L ++M       +  T
Sbjct: 182 MYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQST 241

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +V  +CA     + G ++H   ++    +D  +  A  DMYAKC  ++ A  VFN + 
Sbjct: 242 YASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLP 301

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
                SYN +IVGY++     ++L +F  ++   +  D +S  GA++AC+ +    +G +
Sbjct: 302 NPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQ 361

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+ ++  L  ++ VAN+ILD Y + G +  A  IFD +  +D+ SWN +I  +    E
Sbjct: 362 LHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEE 421

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +   ++LF +M    +  D  +Y +++ AC+    +  G +    +    +       + 
Sbjct: 422 IVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSA 481

Query: 300 MVDLLGRAGLMEDAVKLIKNLP----------------------------------VEPD 325
           +VD+ G+ G++ +A K+   L                                   V PD
Sbjct: 482 LVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPD 541

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWDEASKVR 383
              +  +L  C     +ELG      +  L   H   YI   L +MY++ G   ++  + 
Sbjct: 542 NFTYATVLDVCANMATIELGKQIHAQILKLNL-HSDVYIASTLVDMYSKCGNMQDSRLMF 600

Query: 384 ELMKSRE 390
           E    R+
Sbjct: 601 EKTPKRD 607



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 171/342 (50%), Gaps = 16/342 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL---VREMPIHNEFPNS 58
           YA+      A  LF  + E+++VSWN++++ +  N +  K++++   +R + I +++   
Sbjct: 82  YAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYA-- 139

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
            T + VL AC+       G ++H   I+ G   D+   +AL DMY+KC  L+ A  +F  
Sbjct: 140 -TFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFRE 198

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  R+ V ++ +I GY Q     E L LF +M  +GM     ++     +CA L+A K G
Sbjct: 199 MPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLG 258

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            ++HG  ++        +  + LD Y +  R+  A K+F+ LP     S+N +I+GY   
Sbjct: 259 TQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQ 318

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
            +   A+ +F++++   + +D +S    LTACS    V KG     ++   +VK      
Sbjct: 319 DQGLKALEIFQSLQRTYLSFDEISLSGALTACS----VIKGHLEGIQLHGLAVKCGLGFN 374

Query: 298 AC----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            C    ++D+ G+ G + +A  +  ++    DA  W A++ A
Sbjct: 375 ICVANTILDMYGKCGALVEACTIFDDME-RRDAVSWNAIIAA 415



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 129/310 (41%), Gaps = 32/310 (10%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF--- 116
           T +++L  C+    L PGK+ HA++I       +++ N L   Y K   +N A  VF   
Sbjct: 8   TFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRM 67

Query: 117 -------------------NISF----------RDEVSYNILIVGYSQTSDCSESLSLFS 147
                              N+ F          RD VS+N L+  Y       +S+ +F 
Sbjct: 68  PHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
            MR L + HD  +F   + AC+ +     G ++H + I+      +   ++++D Y++  
Sbjct: 128 RMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
           ++D A +IF  +P ++   W+ +I GY         + LF+ M + G+G    +Y ++  
Sbjct: 188 KLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFR 247

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           +C+     + G +              +     +D+  +   M DA K+   LP  P  +
Sbjct: 248 SCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQS 307

Query: 328 IWGALLGACR 337
               ++G  R
Sbjct: 308 YNAIIVGYAR 317


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  306 bits (785), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 155/391 (39%), Positives = 230/391 (58%), Gaps = 33/391 (8%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           PN  TL+ V+ ACA    L  GK+ H  II+ G   D+ +  AL  MYA+CG L  A +V
Sbjct: 8   PNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHV 67

Query: 116 FN--------------------------------ISFRDEVSYNILIVGYSQTSDCSESL 143
           F+                                +S RD VS+  +I GY+Q     ESL
Sbjct: 68  FDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESL 127

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203
           ++F++MR  GMK D       +SACA+LAA++ G++ H   ++      + V ++++D Y
Sbjct: 128 NVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMY 187

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
            +SG ++ A ++FD +P ++  SWN++I G    G  + A+ LFE M + G+  + +S++
Sbjct: 188 AKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFV 247

Query: 264 AILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
            +L+ACSH GLV +G+ YF+ M Q   + P   HY CM+DLLGRAG +++A   I  +PV
Sbjct: 248 GVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPV 307

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382
           EPD ++WGALLGACRI+GN EL    AEHL  ++ Q  G Y+LLSN+YA AG+WD+A+KV
Sbjct: 308 EPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAKV 367

Query: 383 RELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           R+LMK R   K PG SW++ +  +  FV  +
Sbjct: 368 RKLMKDRGVMKQPGYSWIEVKTIMHAFVAGE 398



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 137/250 (54%), Gaps = 3/250 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           +A++    +A  LF+ ++E+++VSW A++A +AQN    ++L +  +M       +   +
Sbjct: 86  HAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIM 145

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            +VL ACA    L  G++ HA +++ G   D+ + +AL DMYAK G +  A  VF+ +  
Sbjct: 146 GSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQ 205

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+EVS+N +I G +Q    ++++ LF +M   G+K + +SF+G +SAC++   + +G+  
Sbjct: 206 RNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGY 265

Query: 181 HGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGMLG 238
             +  + + +   +     ++D   R+G +D A    + +PV+ D + W  L+    + G
Sbjct: 266 FNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHG 325

Query: 239 EVDTAINLFE 248
             + A  + E
Sbjct: 326 NTELAKRIAE 335



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 109/248 (43%), Gaps = 34/248 (13%)

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G+K +  +    + ACA++A+++QGK+ H   I+    + + V  +++  Y R G ++ A
Sbjct: 5   GVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDA 64

Query: 213 NKIFDCLPVKDSASWNTLIL-------------------------------GYGMLGEVD 241
             +FD +  + + +WN +I                                GY   G  D
Sbjct: 65  GHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGD 124

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            ++N+F  MR+ G+  D     ++L+AC+    +E G+++   +         +  + +V
Sbjct: 125 ESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALV 184

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--LKPQH 359
           D+  ++G MEDA ++   +P   + + W +++  C  +G         E +    +KP  
Sbjct: 185 DMYAKSGSMEDACQVFDKMPQRNEVS-WNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNE 243

Query: 360 CGYYILLS 367
             +  +LS
Sbjct: 244 ISFVGVLS 251



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS    +A  +F  + ++N VSWN+++   AQ+     A+ L  +M      PN ++
Sbjct: 186 MYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEIS 245

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
              VL AC+    +  G+     + +  G+  D+     + D+  + GCL+ A+N  N +
Sbjct: 246 FVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGM 305

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155
               +VS    ++G  +    +E     +E  LLGM+
Sbjct: 306 PVEPDVSVWGALLGACRIHGNTELAKRIAE-HLLGME 341


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  306 bits (785), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 159/454 (35%), Positives = 251/454 (55%), Gaps = 40/454 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +F  + ++N+VSWN+++  F QN   ++AL + + M      P+ VT
Sbjct: 196 MYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVT 255

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
           L +V+ ACA    ++ G+E+H R+++   L  D+ L+NA  DMYAKC  +  A+ +F+  
Sbjct: 256 LASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSM 315

Query: 118 ------------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
                                         ++ R+ VS+N LI GY+Q  +  E+LSLF 
Sbjct: 316 PIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC 375

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH------GVTIRKHLHTHLFVANSILD 201
            ++   +     SF   + ACA+LA +  G + H      G   +      +FV NS++D
Sbjct: 376 LLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLID 435

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y + G ++    +F  +  +D  SWN +I+G+   G  + A+ LF  M E G   D ++
Sbjct: 436 MYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHIT 495

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
            I +L+AC H G VE+G+ YF  M  D  V P   HY CMVDLLGRAG +E+A  +I+ +
Sbjct: 496 MIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEM 555

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
           P++PD+ IWG+LL AC+++ N+ LG + AE L  ++P + G Y+LLSNMYAE GKW++  
Sbjct: 556 PMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVM 615

Query: 381 KVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            VR+ M+     K PGCSW++ +     F+V D+
Sbjct: 616 NVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDK 649



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 157/291 (53%), Gaps = 6/291 (2%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EA  LF ++ E++  +WN+MV+ FAQ+    +AL     M       N  +  +VL AC+
Sbjct: 104 EADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACS 163

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
             + +  G ++H+ I +     D+++ +AL DMY+KCG +N AQ VF+ +  R+ VS+N 
Sbjct: 164 GLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNS 223

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK- 187
           LI  + Q     E+L +F  M    ++ D V+    ISACA+L+AIK G+E+HG  ++  
Sbjct: 224 LITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKND 283

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            L   + ++N+ +D Y +  RI  A  IFD +P+++  +  ++I GY M      A  +F
Sbjct: 284 KLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMF 343

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             M E  V    VS+ A++   +  G  E+    F  ++ +SV PT   +A
Sbjct: 344 TKMAERNV----VSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFA 390



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 147/304 (48%), Gaps = 34/304 (11%)

Query: 53  NEFPNSVTLTNVLPACARGHFLRP-GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL 111
           + F +S     +L +C +        + +HA +I+ G + ++F+ N L D Y+KCG L  
Sbjct: 14  SSFTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLED 73

Query: 112 AQNVFN--------------------------------ISFRDEVSYNILIVGYSQTSDC 139
            + VF+                                +  RD+ ++N ++ G++Q   C
Sbjct: 74  GRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRC 133

Query: 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
            E+L  F+ M   G   +  SF   +SAC+ L  + +G ++H +  +    + +++ +++
Sbjct: 134 EEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSAL 193

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
           +D Y++ G ++ A ++FD +  ++  SWN+LI  +   G    A+++F+ M E  V  D 
Sbjct: 194 VDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDE 253

Query: 260 VSYIAILTACSHGGLVEKGKKYFDE-MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
           V+  ++++AC+    ++ G++     ++ D ++   +     VD+  +   +++A  +  
Sbjct: 254 VTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFD 313

Query: 319 NLPV 322
           ++P+
Sbjct: 314 SMPI 317


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 157/418 (37%), Positives = 256/418 (61%), Gaps = 6/418 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A  LF  I  K++VSWNAM++ +A+     +AL+L +EM   N  P+  T+
Sbjct: 210 YASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTM 269

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             V+ ACA+   +  G+++H+ I   G   +L + N+L D+Y+KCG L  A  +F  + +
Sbjct: 270 VTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLY 329

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D +S+N LI GY+  +   E+L LF EM   G + + V+ +  + ACA+L AI  G+ I
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWI 389

Query: 181 HGVTIRKHLHTHLFVAN---SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           H V I K L +    ++   S++D Y + G I+ A+++F+ +  K  +SWN +I G+ M 
Sbjct: 390 H-VYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 448

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G  D A ++F  MR+ G+  D ++++ +L+ACS  G+++ G+  F  M  D  + P   H
Sbjct: 449 GRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEH 508

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y CM+DLLG +GL ++A ++I N+ +EPD  IW +LL AC+I GNVELG   A++L  ++
Sbjct: 509 YGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIE 568

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P++ G Y+LLSN+YA AG+W+E +K+R L+  +  KK PGCS ++    V +F++ D+
Sbjct: 569 PENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDK 626



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 179/365 (49%), Gaps = 37/365 (10%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  I E N++ WN M    A +   + AL+L   M      PNS T   +L +CA+   
Sbjct: 90  VFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKA 149

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
            + G++IH  +++ G + DLF+  +L  +Y + G L  A+ VF+                
Sbjct: 150 FKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKG 209

Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
                           I  +D VS+N +I GY++T +  E+L LF EM    ++ D  + 
Sbjct: 210 YASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTM 269

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           +  +SACA   +I+ G+++H         ++L + NS++D Y++ G ++ A  +F+ L  
Sbjct: 270 VTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLY 329

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-- 279
           KD  SWNTLI GY  +     A+ LF+ M   G   + V+ ++IL AC+H G ++ G+  
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWI 389

Query: 280 -KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
             Y D+    +   + +  + ++D+  + G +E A ++  ++ +    + W A++    +
Sbjct: 390 HVYIDKRLKSATNASSLRTS-LIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAM 447

Query: 339 YGNVE 343
           +G  +
Sbjct: 448 HGRAD 452



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 133/297 (44%), Gaps = 36/297 (12%)

Query: 74  LRPGKEIHARIIRKGL---NFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
           L+  + IHA++I+ GL   N+ L     L  +      L  A +VF  I   + + +N +
Sbjct: 46  LQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTM 105

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
             G++ +SD   +L L+  M  LG+  +  +F   + +CA   A K+G++IHG  ++   
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGY 165

Query: 190 HTHLFVANSILDFYTRSGR-------------------------------IDLANKIFDC 218
              LFV  S++  Y ++GR                               I+ A K+FD 
Sbjct: 166 DLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDE 225

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +PVKD  SWN +I GY   G    A+ LF+ M +  +  D  + + +++AC+  G +E G
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELG 285

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++    +              ++DL  + G +E A  L + L +  D   W  L+G 
Sbjct: 286 RQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGL-LYKDVISWNTLIGG 341


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 156/416 (37%), Positives = 250/416 (60%), Gaps = 3/416 (0%)

Query: 2    YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
            YAK    + A  +FH I  K + SWNA++   AQ+     +L    +M I    P+S T+
Sbjct: 795  YAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTV 854

Query: 62   TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             ++L AC++   LR GKE+H  IIR  L  DLF+  ++  +Y  CG L   Q +F+ +  
Sbjct: 855  CSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 914

Query: 121  RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
            +  VS+N +I GY Q      +L +F +M L G++   +S M    AC+ L +++ G+E 
Sbjct: 915  KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 974

Query: 181  HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
            H   ++  L    F+A S++D Y ++G I  ++K+F+ L  K +ASWN +I+GYG+ G  
Sbjct: 975  HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLA 1034

Query: 241  DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
              AI LFE M+  G   D ++++ +LTAC+H GL+ +G +Y D+M++   +KP   HYAC
Sbjct: 1035 KEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYAC 1094

Query: 300  MVDLLGRAGLMEDAVKLI-KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            ++D+LGRAG ++ A++++ + +  E D  IW +LL +CRI+ N+E+G   A  LF L+P+
Sbjct: 1095 VIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPE 1154

Query: 359  HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
                Y+LLSN+YA  GKW++  KVR+ M     +K+ GCSW++   +V  FVV +R
Sbjct: 1155 KPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGER 1210



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 147/279 (52%), Gaps = 7/279 (2%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE----FPNSVTLTNV 64
            +A  LF  + E+N+VSWN+M+  F+ N    ++  L+ EM   N      P+  TL  V
Sbjct: 594 TDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTV 653

Query: 65  LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRDE 123
           LP CAR   +  GK +H   ++  L+ +L L NAL DMY+KCGC+  AQ +F + + ++ 
Sbjct: 654 LPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNV 713

Query: 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAIKQGKEIH 181
           VS+N ++ G+S   D   +  +  +M   G  +K D V+ + A+  C + + +   KE+H
Sbjct: 714 VSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELH 773

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
             ++++    +  VAN+ +  Y + G +  A ++F  +  K   SWN LI G+    +  
Sbjct: 774 CYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPR 833

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            +++    M+  G+  D  +  ++L+ACS    +  GK+
Sbjct: 834 LSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE 872



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 157/347 (45%), Gaps = 17/347 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           MYA    P ++ ++F  +  KN+  WNA+++++++N L  + L+   EM    +  P+  
Sbjct: 484 MYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHF 543

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI- 118
           T   V+ ACA    +  G  +H  +++ GL  D+F+ NAL   Y   G +  A  +F+I 
Sbjct: 544 TYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIM 603

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL----GMKHDVVSFMGAISACANLAAI 174
             R+ VS+N +I  +S      ES  L  EM           DV + +  +  CA    I
Sbjct: 604 PERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREI 663

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             GK +HG  ++  L   L + N+++D Y++ G I  A  IF     K+  SWNT++ G+
Sbjct: 664 GLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGF 723

Query: 235 GMLGEVDTAINLFEAMREDG--VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
              G+     ++   M   G  V  D V+ +  +  C H   +   K    E+   S+K 
Sbjct: 724 SAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLK----ELHCYSLKQ 779

Query: 293 ----TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                E+     V    + G +  A ++   +  +   N W AL+G 
Sbjct: 780 EFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKT-VNSWNALIGG 825



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 125/264 (47%), Gaps = 15/264 (5%)

Query: 30  VANFAQNRLELKALQLVREMPIHNEFPNSV------TLTNVLPACARGHFLRPGKEIHAR 83
           ++NF +     K+ + V+E    +E  +         L  +L A  +   +  G++IH  
Sbjct: 405 ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQL 464

Query: 84  II--RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCS 140
           +    +  N D+  T  +T MYA CG  + ++ VF+ +  ++   +N +I  YS+     
Sbjct: 465 VSGSTRLRNDDVLCTRIIT-MYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYD 523

Query: 141 ESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
           E L  F EM     +  D  ++   I ACA ++ +  G  +HG+ ++  L   +FV N++
Sbjct: 524 EVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNAL 583

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF-EAMREDGVGY- 257
           + FY   G +  A ++FD +P ++  SWN++I  +   G  + +  L  E M E+G G  
Sbjct: 584 VSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAF 643

Query: 258 --DPVSYIAILTACSHGGLVEKGK 279
             D  + + +L  C+    +  GK
Sbjct: 644 MPDVATLVTVLPVCAREREIGLGK 667



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 1/129 (0%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MYAK+    ++S +F+ + EK+  SWNAM+  +  + L  +A++L  EM      P+ +T
Sbjct: 996  MYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLT 1055

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
               VL AC     +  G     ++    GL  +L     + DM  + G L+ A  V    
Sbjct: 1056 FLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEE 1115

Query: 120  FRDEVSYNI 128
              +E    I
Sbjct: 1116 MSEEADVGI 1124


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 160/454 (35%), Positives = 253/454 (55%), Gaps = 40/454 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +F  + ++N+VSWN+++  + QN   ++AL++ + M      P+ VT
Sbjct: 196 MYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVT 255

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
           L +V+ ACA    ++ G+E+HAR+++   L  D+ L+NA  DMYAKC  +  A+ +F+  
Sbjct: 256 LASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSM 315

Query: 118 ------------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
                                         ++ R+ VS+N LI GY+Q  +  E+LSLF 
Sbjct: 316 PIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC 375

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH------GVTIRKHLHTHLFVANSILD 201
            ++   +     +F   + ACA+LA +  G + H      G   +      +FV NS++D
Sbjct: 376 LLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLID 435

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y + G ++    +F  +  +D  SWN +I+G+   G  + A+ LF  M + G   D ++
Sbjct: 436 MYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHIT 495

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
            I +L+AC H G VE+G+ YF  M  D  V P   HY CMVDLLGRAG +E+A  +I+ +
Sbjct: 496 MIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEM 555

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
           PV+PD+ IWG+LL AC+++ N+ LG + AE LF ++  + G Y+LLSNMYAE GKW +A 
Sbjct: 556 PVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAM 615

Query: 381 KVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            VR+LM+     K PGCSW++       F+V D+
Sbjct: 616 NVRKLMRKEGVTKQPGCSWIKIPGHAHVFMVKDK 649



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 155/291 (53%), Gaps = 6/291 (2%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EA  LF ++ E++  +WN+MV+ FAQ+    +AL     M       N  T  + L AC+
Sbjct: 104 EADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACS 163

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
             + +  G +IH+ I +     D+++ +AL DMY+KCG +N AQ VF+ +  R+ VS+N 
Sbjct: 164 GLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNS 223

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR-K 187
           LI  Y Q     E+L +F  M    ++ D V+    ISACA+L+AIK G+E+H   ++  
Sbjct: 224 LITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMD 283

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            L   + ++N+ +D Y +  RI  A  IFD +P+++  +  +++ GY M      A  +F
Sbjct: 284 KLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMF 343

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             M E  V    VS+ A++   +  G  E+    F  ++ +SV PT   +A
Sbjct: 344 TKMAERNV----VSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFA 390



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 137/276 (49%), Gaps = 33/276 (11%)

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-------------------ISF 120
           +HA +I+ G + ++F+ N L D YAKCG L   + +F+                   + F
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 121 -------------RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
                        RD+ ++N ++ G++Q   C E+L  F+ M   G   +  +F   +SA
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C+ L  + +G +IH +  +    + +++ ++++D Y++ G ++ A ++FD +  ++  SW
Sbjct: 162 CSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSW 221

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE-MQ 286
           N+LI  Y   G    A+ +F+ M E  V  D V+  ++++AC+    ++ G++     ++
Sbjct: 222 NSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVK 281

Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
            D ++   +     VD+  +   +++A  +  ++P+
Sbjct: 282 MDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 156/416 (37%), Positives = 240/416 (57%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  + +K +V+WN+M++ +      +  +QL + M      P   T
Sbjct: 251 MYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTT 310

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L++++  C+R   L  GK +H   IR  +  D+F+ ++L D+Y KCG + LA+ +F +  
Sbjct: 311 LSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIP 370

Query: 121 RDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           + +V S+N++I GY       E+L LFSEMR   ++ D ++F   ++AC+ LAA+++GKE
Sbjct: 371 KSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKE 430

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH + I K L  +  V  ++LD Y + G +D A  +F CLP +D  SW ++I  YG  G 
Sbjct: 431 IHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGH 490

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+ LF  M +  V  D V+++AIL+AC H GLV++G  YF++M     + P   HY+
Sbjct: 491 AYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYS 550

Query: 299 CMVDLLGRAGLMEDAVKLIKNLP-VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           C++DLLGRAG + +A ++++  P +  D  +   L  ACR++ N++LGA  A  L    P
Sbjct: 551 CLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDP 610

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
                YILLSNMYA A KWDE   VR  MK    KKNPGCSW++   ++  F V D
Sbjct: 611 DDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFFVED 666



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 201/386 (52%), Gaps = 13/386 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K +   +A +LF+ + EK++  WN +++ + Q+     AL+    M      PNSVT
Sbjct: 150 MYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVT 209

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +T  + +CAR   L  G EIH  +I  G   D F+++AL DMY KCG L +A  +F  + 
Sbjct: 210 ITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMP 269

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  V++N +I GY    D    + LF  M   G+K  + +    I  C+  A + +GK 
Sbjct: 270 KKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKF 329

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG TIR  +   +FV +S++D Y + G+++LA KIF  +P     SWN +I GY   G+
Sbjct: 330 VHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGK 389

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +  A+ LF  MR+  V  D +++ ++LTACS    +EKGK+  + +    +   E+    
Sbjct: 390 LFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGA 449

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM----- 354
           ++D+  + G +++A  + K LP + D   W +++ A   +G+    A+ A  LF      
Sbjct: 450 LLDMYAKCGAVDEAFSVFKCLP-KRDLVSWTSMITAYGSHGH----AYGALELFAEMLQS 504

Query: 355 -LKPQHCGYYILLSNMYAEAGKWDEA 379
            +KP    +  +LS     AG  DE 
Sbjct: 505 NVKPDRVAFLAILSAC-GHAGLVDEG 529



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 202/420 (48%), Gaps = 42/420 (10%)

Query: 11  ASYLFHNIAEKNIVS-WNAMVANFAQNRLELKALQLVREMPIHNEF--PNSVTLTNVLPA 67
           A  +F N+     +S WN ++A + +N + ++AL+L  ++ +H  +  P+S T  +V  A
Sbjct: 57  AKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKL-LHYPYLKPDSYTYPSVFKA 115

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSY 126
           C   H    GK IH  +I+ GL  D+ + ++L  MY KC     A  +FN +  +D   +
Sbjct: 116 CGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACW 175

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           N +I  Y Q+ +  ++L  F  MR  G + + V+   AIS+CA L  + +G EIH   I 
Sbjct: 176 NTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELIN 235

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
                  F++++++D Y + G +++A +IF+ +P K   +WN++I GYG+ G++ + I L
Sbjct: 236 SGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQL 295

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
           F+ M  +GV     +  +++  CS    + +GK        + ++P     + ++DL  +
Sbjct: 296 FKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFK 355

Query: 307 AGLMEDAVKLIKNLP----------------------------------VEPDANIWGAL 332
            G +E A K+ K +P                                  VE DA  + ++
Sbjct: 356 CGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSV 415

Query: 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL--LSNMYAEAGKWDEASKVRELMKSRE 390
           L AC     +E G     +L + K       ++  L +MYA+ G  DEA  V + +  R+
Sbjct: 416 LTACSQLAALEKGK-EIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRD 474



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 136/285 (47%), Gaps = 4/285 (1%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L  +L AC     L+ GK IH +++  GL  D+FL   L + Y  C   + A+ VF N+ 
Sbjct: 6   LLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNME 65

Query: 120 FRDEVS-YNILIVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLAAIKQG 177
              E+S +N L+ GY++     E+L LF + +    +K D  ++     AC  L     G
Sbjct: 66  NPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLG 125

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K IH   I+  L   + V +S++  Y +    + A  +F+ +P KD A WNT+I  Y   
Sbjct: 126 KMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQS 185

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G    A+  F  MR  G   + V+    +++C+    + +G +  +E+            
Sbjct: 186 GNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFIS 245

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
           + +VD+ G+ G +E A+++ + +P +     W +++    + G++
Sbjct: 246 SALVDMYGKCGHLEMAIEIFEQMP-KKTVVAWNSMISGYGLKGDI 289



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 9/192 (4%)

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
           D    +  + AC N  ++KQGK IH   +   L   +F+  ++++ Y      D A  +F
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVF 61

Query: 217 DCL--PVKDSASWNTLILGYGMLGEVDTAINLFEAMRE-DGVGYDPVSYIAILTACSHGG 273
           D +  P + S  WN L+ GY        A+ LFE +     +  D  +Y ++  AC  GG
Sbjct: 62  DNMENPCEISL-WNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKAC--GG 118

Query: 274 LVEK--GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
           L     GK     +    +    +  + +V + G+    E A+ L   +P E D   W  
Sbjct: 119 LHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMP-EKDVACWNT 177

Query: 332 LLGACRIYGNVE 343
           ++      GN +
Sbjct: 178 VISCYYQSGNFK 189


>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 154/424 (36%), Positives = 257/424 (60%), Gaps = 8/424 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++ +    +  +F  + EK++VSWN M++ F QN L+ + L LV EM       +SVT
Sbjct: 248 MYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQKQGFIADSVT 307

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---N 117
           +T++L A +       GK+ HA +IR G+ FD  + + L DMYAK G + ++Q VF   N
Sbjct: 308 VTSLLSAASNLRNREIGKQTHAYLIRHGIKFD-GMDSYLIDMYAKSGLIRISQRVFENNN 366

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           I  RD+ ++N +I GY+Q     ++   F  M    ++ + V+    + AC++L +I  G
Sbjct: 367 IQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLG 426

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K++HGV+IR  L  ++FV  +++D Y++SG I+ A  +F     ++S ++ T+ILGYG  
Sbjct: 427 KQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQH 486

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G  + A++LF +M++ G+  D ++++A+L+ACS+ GLV++G + F+ M+ D  ++P+  H
Sbjct: 487 GMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIFESMKRDFKIQPSTAH 546

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDA-NIWGALLGACRIYGNVELGAWAAEHLFML 355
           Y C+ D+LGR G + +A + +K L  E     IWG+LLGACR++G++ELG   +  L  +
Sbjct: 547 YCCVADMLGRVGRVIEAYEFVKQLGEEGHVIEIWGSLLGACRLHGHIELGEEVSNRLLEM 606

Query: 356 KP--QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               +  GY +LLSNMYAE   W+   K+R+ M+ +  +K  GCSW+ T   +  FV  D
Sbjct: 607 NSVDRLAGYQVLLSNMYAEEANWETVDKLRKSMREKGLRKEVGCSWIDTGGLLVRFVSKD 666

Query: 414 RMKT 417
           +  T
Sbjct: 667 KDHT 670



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 175/337 (51%), Gaps = 10/337 (2%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + ++++++WN MV+ + +    ++A++  R M      P+ V+  NV PA +    
Sbjct: 56  VFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSVGD 115

Query: 74  LRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILI 130
            +    ++  +++ G  +  DLF+ ++   MYA+ GCL+L + VF+         +N +I
Sbjct: 116 FKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTMI 175

Query: 131 VGYSQTSDCSESLSLFSEMRLLGMKH---DVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            G+ Q +   E + LF  ++ +  +H   D V+F+ A++A + L  +  G+++H  T++ 
Sbjct: 176 GGHIQNNSFLEGVYLF--LQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKN 233

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
           H    + V N+IL  Y+R   +  + ++F+ +P KD  SWNT+I G+   G  +  + L 
Sbjct: 234 HTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLV 293

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
             M++ G   D V+  ++L+A S+    E GK+    +    +K   M  + ++D+  ++
Sbjct: 294 YEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFDGMD-SYLIDMYAKS 352

Query: 308 GLMEDAVKLIKNLPVE-PDANIWGALLGACRIYGNVE 343
           GL+  + ++ +N  ++  D   W A++      G VE
Sbjct: 353 GLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVE 389



 Score = 38.9 bits (89), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 21/142 (14%)

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           RS    L +K+F  +  +D  +WNT++  Y        AI  F  M + G+   PVS++ 
Sbjct: 46  RSRLSRLLHKVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVN 105

Query: 265 ILTACS-----------HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
           +  A S           +G L++ G +Y +++   S           + +    G + D 
Sbjct: 106 VFPAISSVGDFKNANVLYGMLLKLGNEYANDLFVVS---------SAISMYAELGCL-DL 155

Query: 314 VKLIKNLPVEPDANIWGALLGA 335
            + + +  +E  A +W  ++G 
Sbjct: 156 CRKVFDSCLEKSAEVWNTMIGG 177


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 162/409 (39%), Positives = 237/409 (57%), Gaps = 29/409 (7%)

Query: 7   RPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLP 66
           R   A  LF  + +++++SWN+M++ +  N L  K L L  +M +     +  T+ +V  
Sbjct: 200 RVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV-- 257

Query: 67  ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVS 125
                                    +L L N L DMY+K G LN A  VF  +  R  VS
Sbjct: 258 -------------------------ELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVS 292

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           +  +I GY++      S+ LF EM    +  + ++    + ACA+LAA+++G+EIHG  +
Sbjct: 293 WTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHIL 352

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
           R        VAN+++D Y + G + LA  +FD +P KD  SW  +I GYGM G    AI 
Sbjct: 353 RNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIA 412

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYACMVDLL 304
            F  MR  G+  D VS+I+IL ACSH GL+++G  +F+ M+ +  ++P   HYAC+VDLL
Sbjct: 413 AFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLL 472

Query: 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364
            RAG +  A K IK +P+EPDA IWGALL  CRIY +V+L    AEH+F L+P++ GYY+
Sbjct: 473 ARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYV 532

Query: 365 LLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           LL+N+YAEA KW+E  K+RE +  R  +KNPGCSW++ + +V  FV  D
Sbjct: 533 LLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGD 581



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 167/371 (45%), Gaps = 38/371 (10%)

Query: 5   SSRPAEASYLFHNIA------------EKNIVSWNAMVANFAQNRLELKALQLVREMPIH 52
           S  P  +S L+H+ A            +  I  +N  +  F +     +A++L+ + P  
Sbjct: 38  SKTPLVSSNLYHSCATIGTSVLPSETIDCKITDYNIEICRFCELGNLRRAMELINQSPKP 97

Query: 53  NEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
           +      T  +VL  CA    ++ G+ IH+ I    +  D  L + L  MY  CG L   
Sbjct: 98  D--LELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREG 155

Query: 113 QNVFNISFRDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMK--------------HD 157
           + +F+    ++V  +N+L+ GY++  +  ESLSLF  MR LG++               D
Sbjct: 156 RRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRD 215

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT--------HLFVANSILDFYTRSGRI 209
           V+S+   IS   +    ++G ++    +   ++T         L + N +LD Y++SG +
Sbjct: 216 VISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNL 275

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           + A ++F+ +  +   SW ++I GY   G  D ++ LF  M ++ +  + ++   IL AC
Sbjct: 276 NSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPAC 335

Query: 270 SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIW 329
           +    +E+G++    +  +           +VD+  + G +  A  L   +P E D   W
Sbjct: 336 ASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIP-EKDLVSW 394

Query: 330 GALLGACRIYG 340
             ++    ++G
Sbjct: 395 TVMIAGYGMHG 405


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 151/403 (37%), Positives = 248/403 (61%), Gaps = 3/403 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +      A  LF+ +  K++V+WN ++  F +      AL++   + +    P+S T
Sbjct: 473 MYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGT 532

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS- 119
           + ++L ACA    L  G   H  II+ G+  ++ +  AL DMYAKCG L  A+N+F+++ 
Sbjct: 533 MVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNK 592

Query: 120 -FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +DEVS+N++I GY      +E++S F++M+L  ++ ++V+F+  + A + L+ +++  
Sbjct: 593 HVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAM 652

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             H   IR    +   + NS++D Y +SG++  + K F  +  K + SWN ++ GY M G
Sbjct: 653 AFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHG 712

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
           + + A+ LF  M+E  V  D VSYI++L+AC H GL+++G+  F  M +  +++P+  HY
Sbjct: 713 QGEVALALFSLMQETHVPVDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHY 772

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACMVDLLG AGL ++ + LI  +P EPDA +WGALLGAC+++ NV+LG  A  HL  L+P
Sbjct: 773 ACMVDLLGCAGLFDEVLCLIDKMPTEPDAQVWGALLGACKMHSNVKLGEIALHHLLKLEP 832

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
           ++  +YI+LS++YA+ G+W +A + R  M     KKNPG SWV
Sbjct: 833 RNAVHYIVLSDIYAQCGRWIDARRTRSNMTDHGLKKNPGYSWV 875



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 165/326 (50%), Gaps = 15/326 (4%)

Query: 17  NIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRP 76
           +I   +++ WN+++  +++  L  +A++  + M      P+  T T VL AC        
Sbjct: 86  SITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHE 145

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           G  IH  I  + L  D+F+   L DMY K G L+ A+ VF+ +  +D  S+N +I G SQ
Sbjct: 146 GVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQ 205

Query: 136 TSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
           +S+  E+L +F  M++  G++ D VS +    A + L  +   K IHG  +R+ +     
Sbjct: 206 SSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFG--V 263

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           V+NS++D Y++ G + LA++IFD + VKD  SW T++ GY   G     + L + M+   
Sbjct: 264 VSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKH 323

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDE-----MQADSVKPTEMHYACMVDLLGRAGL 309
           +  + +S +  + A +    +EKGK+  +      M +D V  T      +V +  + G 
Sbjct: 324 IKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATP-----IVSMYAKCGE 378

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGA 335
           ++ A +   +L    D  +W A L A
Sbjct: 379 LKKAKEFFLSLEGR-DLVVWSAFLSA 403



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 167/344 (48%), Gaps = 28/344 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  +  K+ +SW  M+A +  +    + LQL+ EM   +   N ++
Sbjct: 271 MYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKIS 330

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + N + A      L  GKE+H   ++ G+  D+ +   +  MYAKCG L  A+  F ++ 
Sbjct: 331 VVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLE 390

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V ++  +    Q     E+LS+F EM+  G+K D       +SACA +++ + GK 
Sbjct: 391 GRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKM 450

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+  + + + VA +++  YTR      A  +F+ +  KD  +WNTLI G+   G+
Sbjct: 451 MHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGD 510

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQAD 288
              A+ +F  ++  GV  D  + +++L+AC+           HG +++ G +        
Sbjct: 511 PRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIE-------- 562

Query: 289 SVKPTEMHY-ACMVDLLGRAGLM---EDAVKLIKNLPVEPDANI 328
               +EMH    ++D+  + G +   E+   L K++  E   N+
Sbjct: 563 ----SEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNV 602



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 182/381 (47%), Gaps = 38/381 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MY K      A  +F  +  K++ SWNAM++  +Q+    +AL++ + M +     P+SV
Sbjct: 171 MYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSV 230

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           ++ N+ PA +R   +   K IH  ++R+ + F + ++N+L DMY+KCG + LA  +F+ +
Sbjct: 231 SILNLAPAVSRLEDVDSCKSIHGYVVRRCV-FGV-VSNSLIDMYSKCGEVKLAHQIFDQM 288

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D++S+  ++ GY       E L L  EM+   +K + +S + ++ A      +++GK
Sbjct: 289 WVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGK 348

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+H   ++  + + + VA  I+  Y + G +  A + F  L  +D   W+  +      G
Sbjct: 349 EVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAG 408

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF-----DEMQAD-SVKP 292
               A+++F+ M+ +G+  D     ++++AC+       GK         +M +D SV  
Sbjct: 409 YPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVAT 468

Query: 293 T-------------------EMHYA------CMVDLLGRAGLMEDAVKLIKNLP---VEP 324
           T                    MHY        +++   + G    A+++   L    V+P
Sbjct: 469 TLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQP 528

Query: 325 DANIWGALLGACRIYGNVELG 345
           D+    +LL AC +  ++ LG
Sbjct: 529 DSGTMVSLLSACALLDDLYLG 549



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 23/199 (11%)

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVG 132
           +L P  +IHAR+I +                 +C    LA N  +I+    + +N LI  
Sbjct: 64  YLNPLLQIHARLIVQ-----------------QC---TLAPN--SITNPSLILWNSLIRA 101

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           YS+     E++  +  M  +G++ D  +F   + AC       +G  IH     + L   
Sbjct: 102 YSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAIHQDIASRELECD 161

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR- 251
           +F+   ++D Y + G +D A K+FD +P KD ASWN +I G         A+ +F+ M+ 
Sbjct: 162 VFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQM 221

Query: 252 EDGVGYDPVSYIAILTACS 270
           E+GV  D VS + +  A S
Sbjct: 222 EEGVEPDSVSILNLAPAVS 240


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 152/415 (36%), Positives = 242/415 (58%), Gaps = 1/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  I+++N+V+WNAM+  + Q+     A+   + +      P+S T
Sbjct: 451 MYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSST 510

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T++L  C     L  GK + + IIR G   DL + NAL  M+  CG L  A N+FN + 
Sbjct: 511 FTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMP 570

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N +I G+ Q  +   +   F  M+  G+K D ++F G ++ACA+  A+ +G+ 
Sbjct: 571 ERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRR 630

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H +     L   + V   ++  YT+ G ID A+ +F  LP K+  SW ++I GY   G 
Sbjct: 631 LHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGR 690

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ LF  M+++GV  D ++++  L+AC+H GL+++G  +F+ M+  +++P   HY C
Sbjct: 691 GKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKDFNIEPRMEHYGC 750

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDL GRAGL+ +AV+ I  + V+PD+ +WGALLGAC+++ +VEL    A+    L P  
Sbjct: 751 MVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPND 810

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            G Y++LSN+YA AG W E +K+R++M  R   K PG SW++    V  F  +D+
Sbjct: 811 DGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDK 865



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 184/382 (48%), Gaps = 35/382 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F  + +K++ SWN ++  + Q+R   +A +L  +M      P+  T
Sbjct: 148 MYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYT 207

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              +L ACA    +  G E+ + I+  G + DLF+  AL +M+ KCG ++ A  VFN + 
Sbjct: 208 FVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLP 267

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +++  +I G ++     ++ +LF  M   G++ D V+F+  + AC +  A++QGK 
Sbjct: 268 RRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKR 327

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H       L T ++V  ++L  YT+ G ++ A ++F+ +  ++  SW  +I G+   G 
Sbjct: 328 VHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGR 387

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           ++ A   F  M E G+  + V++++IL ACS    +++G++  D +        +     
Sbjct: 388 MEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTA 447

Query: 300 MVDLLGRAGLMEDAVKLIKNLP----------------------------------VEPD 325
           ++ +  + G + DA  + + +                                   ++PD
Sbjct: 448 LLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPD 507

Query: 326 ANIWGALLGACRIYGNVELGAW 347
           ++ + ++L  C+    +ELG W
Sbjct: 508 SSTFTSILNVCKSPDALELGKW 529



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 175/342 (51%), Gaps = 4/342 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ K     +A  +F+N+  +++++W +M+   A++R   +A  L + M      P+ V 
Sbjct: 249 MHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVA 308

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L AC     L  GK +HAR+   GL+ ++++  AL  MY KCG +  A  VFN + 
Sbjct: 309 FVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVK 368

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+  +I G++Q     E+   F++M   G++ + V+FM  + AC+  +A+KQG++
Sbjct: 369 GRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQ 428

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+    T   V  ++L  Y + G +  A  +F+ +  ++  +WN +I  Y    +
Sbjct: 429 IHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEK 488

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA- 298
            D A+  F+A+ ++G+  D  ++ +IL  C     +E G K+   +   +   +++H   
Sbjct: 489 YDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIRN 547

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
            +V +    G +  A+ L  ++P E D   W  ++     +G
Sbjct: 548 ALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAGFVQHG 588



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 170/330 (51%), Gaps = 21/330 (6%)

Query: 27  NAMVANFAQNRLELKALQLVREM-----------PIHNEFPNSVTLTNVLPACARGHFLR 75
           N   AN   NRL  KA QL   M            IH +     T +++L  C +   L 
Sbjct: 68  NTQRANAFLNRLS-KAGQLSEAMLVLLSVDSPHIQIHRQ-----TYSSLLQLCIKHKNLG 121

Query: 76  PGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYS 134
            G+ IH  I    +  D+F+ N L  MYAKCG  N A+ +F+ +  +D  S+N+L+ GY 
Sbjct: 122 DGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYV 181

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
           Q     E+  L  +M   G+K D  +F+  ++ACA+   + +G E+  + +     T LF
Sbjct: 182 QHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLF 241

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           V  ++++ + + G +D A K+F+ LP +D  +W ++I G     +   A NLF+ M E+G
Sbjct: 242 VGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEG 301

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-CMVDLLGRAGLMEDA 313
           V  D V+++++L AC+H   +E+GK+    M+   +  TE++    ++ +  + G MEDA
Sbjct: 302 VQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLD-TEIYVGTALLSMYTKCGSMEDA 360

Query: 314 VKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           +++  NL    +   W A++     +G +E
Sbjct: 361 LEVF-NLVKGRNVVSWTAMIAGFAQHGRME 389


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/437 (36%), Positives = 248/437 (56%), Gaps = 33/437 (7%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F     +++VSWN+M+  + +     +AL   REM +    P+ VT+  V+ +CA+
Sbjct: 161 ARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQ 220

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-------ISF--- 120
              L  G+E H  I   GL   + L NAL DMY KCG L  A+ +F+       +S+   
Sbjct: 221 LEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTM 280

Query: 121 ----------------------RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
                                 +D V +N +I GY   +   E+L+LF+EM+ + +  D 
Sbjct: 281 VVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDE 340

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
           V+ +  +SAC+ L A+  G  IH    +  L  ++ +  +++D Y + G+I  A ++F  
Sbjct: 341 VTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQE 400

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           LP ++S +W  +I G  + G    AI  F  M ++ V  D V+++ +L+AC HGGLVE+G
Sbjct: 401 LPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEG 460

Query: 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
           +KYF +M +  ++ P   HY+CMVDLLGRAGL+E+A +LIK++P+E DA +WGAL  ACR
Sbjct: 461 RKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACR 520

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           I+GNV +G  AA  L  + P   G Y+LL+NMY EA  W EA K R+LM+ R  +K PGC
Sbjct: 521 IHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGC 580

Query: 398 SWVQTRDEVQDFVVNDR 414
           S ++    V +F+V D+
Sbjct: 581 SSIEVNGIVYEFIVRDK 597



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 175/365 (47%), Gaps = 42/365 (11%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLV-REMPIHNEFPNSVTLTNVLPACARGH 72
           +  N    N  SWN  +  F  +    +A+ L  R +      P++ T   +  ACAR  
Sbjct: 62  ILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLS 121

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNILIV 131
            +R G EI   ++  G + D+F++NA+  +   CG L+ A+ +F+ S  RD VS+N +I 
Sbjct: 122 LIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMIN 181

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           GY +     E+L+ + EM++ G+K D V+ +G +S+CA L  +  G+E H       L  
Sbjct: 182 GYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKL 241

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            + +AN+++D Y + G ++ A K+FD +  K   SW T+++GY   G +D A  LF+ M 
Sbjct: 242 TVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMP 301

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM---------------- 295
           +     D V + A++    H    ++    F+EMQA ++ P E+                
Sbjct: 302 DK----DVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALD 357

Query: 296 ------HY-------------ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
                 HY               ++D+  + G +  A+++ + LP   ++  W A++   
Sbjct: 358 VGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR-NSLTWTAIISGL 416

Query: 337 RIYGN 341
            ++GN
Sbjct: 417 ALHGN 421



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 170/405 (41%), Gaps = 84/405 (20%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP---------- 50
           MY K      A  LF ++  K +VSW  MV  +AQ+ L   A +L  EMP          
Sbjct: 252 MYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAM 311

Query: 51  ---------------IHNEF------PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
                          + NE       P+ VT+ + L AC++   L  G  IH  I +  L
Sbjct: 312 IGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHEL 371

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
           + ++ L  AL DMYAKCG +  A  VF  +  R+ +++  +I G +   +   +++ FSE
Sbjct: 372 SLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSE 431

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKE-IHGVTIRKHLHTHLFVANSILDFYTRSG 207
           M    +  D V+F+G +SAC +   +++G++    ++ + +L   L   + ++D   R+G
Sbjct: 432 MIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAG 491

Query: 208 RIDLANKIFDCLPVK-DSASWNTLILGYGMLGEV----------------DTAINLFEA- 249
            ++ A ++   +P++ D+  W  L     + G V                D+ I +  A 
Sbjct: 492 LLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLAN 551

Query: 250 -----------------MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
                            MR+ GV   P         CS    +E     ++ +  D   P
Sbjct: 552 MYGEAEMWKEAGKARKLMRQRGVEKTP--------GCSS---IEVNGIVYEFIVRDKSHP 600

Query: 293 -TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
            +E  Y C++ L  +  L+E         P+  D +++G+  G C
Sbjct: 601 QSEQIYECLIQLTRQLELVE----CTPVFPIFGDNSLFGSDFGRC 641



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 128/247 (51%), Gaps = 4/247 (1%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYA--KCGCLNLAQNV-FNISFRDEVSYNILIVGYS 134
           K+I ++++  GL  D F ++ L    A  +   L+   N+ FN    +  S+N+ I G+ 
Sbjct: 23  KQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFL 82

Query: 135 QTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
            + +  E++ L+   ++  G K D  ++     ACA L+ I+ G EI G  +     + +
Sbjct: 83  DSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDI 142

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
           FV+N+++      G +D A K+FD   V+D  SWN++I GY   G    A+N +  M+ +
Sbjct: 143 FVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVE 202

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
           G+  D V+ I ++++C+    ++ G++    ++ + +K T      ++D+  + G +E A
Sbjct: 203 GIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESA 262

Query: 314 VKLIKNL 320
            KL  ++
Sbjct: 263 RKLFDSM 269


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 153/414 (36%), Positives = 245/414 (59%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     EA  +F  + E++ V+W  +++ ++Q+     AL L  +M      PN  T
Sbjct: 95  MYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFT 154

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L++V+ A A       G ++H   ++ G + ++ + +AL D+Y + G ++ AQ VF+ + 
Sbjct: 155 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALE 214

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R++VS+N LI G+++     ++L LF  M   G +    S+     AC++   ++QGK 
Sbjct: 215 SRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKW 274

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+       F  N++LD Y +SG I  A KIFD L  +D  SWN+L+  Y   G 
Sbjct: 275 VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGF 334

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+  FE MR  G+  + +S++++LTACSH GL+++G  Y++ M+ D +     HY  
Sbjct: 335 GNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVT 394

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLLGRAG +  A++ I+ +P+EP A IW ALL ACR++ N ELGA+AAEH+F L P  
Sbjct: 395 IVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDD 454

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G +++L N+YA  G+W++A++VR+ MK    KK P CSWV+  + +  FV ND
Sbjct: 455 PGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVAND 508



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 162/342 (47%), Gaps = 10/342 (2%)

Query: 49  MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
           +P+   F N++     L  C     L  G+ +H  +I+     DL + N L +MYAKCG 
Sbjct: 47  IPVDRRFYNTL-----LKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGS 101

Query: 109 LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
           L  A+ VF+ +  RD V++  LI GYSQ     ++L LF++M   G   +  +    I A
Sbjct: 102 LEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKA 161

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
            A       G ++HG  ++    +++ V +++LD YTR G +D A  +FD L  ++  SW
Sbjct: 162 AAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSW 221

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           N LI G+      + A+ LF+ M  +G      SY ++  ACS  G +E+GK     M  
Sbjct: 222 NALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 281

Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG-NVELGA 346
              K        ++D+  ++G + DA K+   L  + D   W +LL A   +G   E   
Sbjct: 282 SGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRL-AKRDVVSWNSLLTAYAQHGFGNEAVC 340

Query: 347 WAAE-HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           W  E     ++P    +  +L+   + +G  DE     ELMK
Sbjct: 341 WFEEMRRGGIRPNEISFLSVLTAC-SHSGLLDEGWHYYELMK 381


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 156/416 (37%), Positives = 249/416 (59%), Gaps = 4/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +   + + ++VSWN+++  F ++ LE +AL+L + M   N   +  T
Sbjct: 309 MYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYT 368

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             +VL  C  G  + P K +H  II+ G      ++NAL DMYAK G ++ A  VF    
Sbjct: 369 FPSVLNCCVVGS-INP-KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKML 426

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+  L+ GY+Q +   ESL +F +MR+ G+  D       +SACA L  ++ GK+
Sbjct: 427 EKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQ 486

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+  L     V NS++  Y + G +D A+ IF  + VKD  +W  +I+GY   G+
Sbjct: 487 VHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGK 546

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              ++  ++AM   G   D +++I +L ACSH GLV++G+KYF +M +   +KP   HYA
Sbjct: 547 GRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYA 606

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DL GR+G +++A +L+  + V+PDA +W +LL ACR++ N+EL   AA +LF L+P 
Sbjct: 607 CMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPM 666

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +   Y++LSNMY+ + KW++ +K+R+LMKS+   K PGCSW++    V  F+ +DR
Sbjct: 667 NAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDR 722



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 174/365 (47%), Gaps = 37/365 (10%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQ-NRL----------------------- 38
           +KS +  +A  LF  + +K+  SWN M++++    RL                       
Sbjct: 76  SKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIIS 135

Query: 39  -------ELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF 91
                  +++A  L R M +     +  TL +VL  C+    ++ G+ IH  +++ G   
Sbjct: 136 GYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEG 195

Query: 92  DLFLTNALTDMYAKCGCLNLAQNVFN---ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
           ++F+   L DMYAKC C++ A+ +F       ++ V +  ++ GY+Q  D  +++  F  
Sbjct: 196 NVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRY 255

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M   G++ +  +F   ++AC+++ A   G+++HG  ++    ++++V ++++D Y + G 
Sbjct: 256 MHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGD 315

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +  A  + + +   D  SWN+L++G+   G  + A+ LF+ M    +  D  ++ ++L  
Sbjct: 316 LKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNC 375

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           C  G +    K     +     +  ++    +VD+  + G M+ A  + + + +E D   
Sbjct: 376 CVVGSI--NPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKM-LEKDVIS 432

Query: 329 WGALL 333
           W +L+
Sbjct: 433 WTSLV 437



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 46/216 (21%)

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
           ++L   H+   FM  +            + IH  T   +    ++  N +L+  ++SG++
Sbjct: 36  KVLSFPHNPCKFMAFL------------RSIHTTTAASY--ESIYQTNQLLNQLSKSGQV 81

Query: 210 DLANKIFDCLPVKDSASWNTLI-------------------------------LGYGMLG 238
           + A K+FD +P KD  SWNT+I                                GY   G
Sbjct: 82  NDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFG 141

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
               A +LF +MR +G      +  ++L  CS  GL++ G+     +  +  +       
Sbjct: 142 CKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVT 201

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANI-WGALL 333
            +VD+  +   + +A  L K L  +   ++ W A++
Sbjct: 202 GLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMV 237


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  305 bits (780), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 154/414 (37%), Positives = 251/414 (60%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS+   +A  +F  +AE+N++S+NAM+  ++      +AL+L  EM +    P+ +T
Sbjct: 375 MYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLT 434

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L   A    L   K+IH  II+ G++ DLF  +AL D+Y+KC  +  A++VF  ++
Sbjct: 435 FVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMN 494

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V +N +  GY+Q  +  E+L L+S ++    K +  +F   I+A +NLA+++ G++
Sbjct: 495 EKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQ 554

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   ++  L    FV N+++D Y + G I+ A K+F+    +D   WN++I  +   GE
Sbjct: 555 FHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGE 614

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ +F  M ++G+  + V+++A+L+ACSH G VE G  +F+ M    +KP   HYAC
Sbjct: 615 AEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYAC 674

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +V LLGR+G + +A + I+ +P+EP A +W +LL ACRI GNVELG +AAE      P+ 
Sbjct: 675 VVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKD 734

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G YILLSN++A  G W +  KVR+ M S E  K PG SW++  ++V  F+  D
Sbjct: 735 SGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARD 788



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 197/422 (46%), Gaps = 46/422 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K+    EA  +F  ++EK  V+W  ++A + +      +L+L  +M   N  P+   +
Sbjct: 174 YSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVV 233

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           ++VL AC+   FL  GK+IHA ++R+G   D+ + N L D Y KC  +   + +F+ +  
Sbjct: 234 SSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVV 293

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ +S+  +I GY Q S   E++ LF EM  LG K D  +    +++C +  A++QG+++
Sbjct: 294 KNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQV 353

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H  TI+ +L +  FV N ++D Y +S  +  A K+FD +  ++  S+N +I GY    ++
Sbjct: 354 HAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKL 413

Query: 241 DTAINLFEAMR-----------------------------------EDGVGYDPVSYIAI 265
             A+ LF  MR                                   + GV  D  +  A+
Sbjct: 414 SEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSAL 473

Query: 266 LTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV-- 322
           +   S    V+  +  F+EM + D V    M +     L       E+A+KL   L    
Sbjct: 474 IDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLEN-----EEALKLYSTLQFSR 528

Query: 323 -EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI-LLSNMYAEAGKWDEAS 380
            +P+   + AL+ A     ++  G      L  +    C +    L +MYA+ G  +EA 
Sbjct: 529 QKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEAR 588

Query: 381 KV 382
           K+
Sbjct: 589 KM 590



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 170/317 (53%), Gaps = 4/317 (1%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN-EFPNSVTL 61
           +KS R   A  +F  +  KN+++W++MV+ ++Q     +AL +  ++   + E PN   L
Sbjct: 73  SKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVL 132

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            +V+ AC +   +  G ++H  ++R G + D+++  +L D Y+K G +  A+ VF+ +S 
Sbjct: 133 ASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSE 192

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  V++  +I GY++    + SL LF++MR   +  D       +SAC+ L  ++ GK+I
Sbjct: 193 KTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQI 252

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   +R+     + V N ++DFYT+  R+    K+FD + VK+  SW T+I GY M    
Sbjct: 253 HAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGY-MQNSF 311

Query: 241 D-TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           D  A+ LF  M   G   D  +  ++LT+C     +E+G++        +++  E     
Sbjct: 312 DWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNG 371

Query: 300 MVDLLGRAGLMEDAVKL 316
           ++D+  ++ L+ DA K+
Sbjct: 372 LIDMYAKSNLLIDAKKV 388



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 125/240 (52%), Gaps = 8/240 (3%)

Query: 43  LQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDM 102
           LQ+    P   EF N + L+      +R   +   K IH +II  GL  D FL N L ++
Sbjct: 18  LQIPNLRPKRREFANLLQLS-----ISRNPIIHY-KIIHGQIIVSGLQSDTFLANILINV 71

Query: 103 YAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-DVVS 160
            +K   ++ A+ VF+ +  ++ ++++ ++  YSQ     E+L +F +++    +H +   
Sbjct: 72  CSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFV 131

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
               I AC  L  +++G ++HG  +R      ++V  S++DFY+++G I+ A  +FD L 
Sbjct: 132 LASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLS 191

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            K + +W T+I GY   G    ++ LF  MRE  V  D     ++L+ACS    +E GK+
Sbjct: 192 EKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQ 251


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  305 bits (780), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 246/412 (59%), Gaps = 2/412 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EA  +F  + +++ ++W  MV    QN L+ +AL + R M       +  T  ++L AC 
Sbjct: 233 EARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACG 292

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
                  GK+IHA  IR   + ++F+ +AL DMY+KC  + LA+ VF  ++ ++ +S+  
Sbjct: 293 ALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTA 352

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +IVGY Q     E++ +FSEM+  G+K +  +    IS+CANLA++++G + H + +   
Sbjct: 353 MIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSG 412

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L  ++ V+++++  Y + G I+ A+++FD +P  D  S+  L+ GY   G+    I+LFE
Sbjct: 413 LRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFE 472

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            M   GV  + V++I +L+ACS  GLVEKG  YF  MQ D  +   + HY CM+DL  R+
Sbjct: 473 KMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRS 532

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           G +++A + I+ +P  PDA  W  LL ACR+ G++E+G WAAE+L    PQ+   Y+LL 
Sbjct: 533 GRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLC 592

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
           +M+A  G+W E + +R  M+ R+ KK PGCSW++ ++ V  F  +D+   F+
Sbjct: 593 SMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFS 644



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 144/280 (51%), Gaps = 24/280 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  +  KNI+SW AM+  + QN    +A+++  EM      PN  T
Sbjct: 325 MYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFT 384

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+ +CA    L  G + H   +  GL   + +++AL  +Y KCG +  A  +F+ + 
Sbjct: 385 LGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMP 444

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
           F D+VSY  L+ GY+Q     E++ LF +M L G+K + V+F+G +SAC+    +++G  
Sbjct: 445 FHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCS 504

Query: 178 -----KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLI 231
                ++ HG+ +    +T       ++D Y+RSGR+  A +    +P   D+  W TL+
Sbjct: 505 YFHSMQQDHGIVLLDDHYT------CMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLL 558

Query: 232 LGYGMLGEVD----TAINLFEAMREDGVGYDPVSYIAILT 267
               + G+++     A NL +   +     +P SY+ + +
Sbjct: 559 SACRLRGDMEIGKWAAENLLKTDPQ-----NPASYVLLCS 593



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 111/264 (42%), Gaps = 43/264 (16%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P +  L ++L A AR   L     +  R+     + +LF  NAL    A    L     +
Sbjct: 43  PPTYVLNHLLTAYARSGRL----PLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRL 98

Query: 116 F-NISFRDEVSYNILIVGYSQTSDCSESLS-----LFSEMRLLG--MKHDVVSFMGAISA 167
           F ++  RD VSYN LI G+S     + +       L  E  + G  ++   ++  G + A
Sbjct: 99  FASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMA 158

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK----- 222
            + L     G+++H   +R     + F  + ++D Y + G I  A ++FD + VK     
Sbjct: 159 ASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMY 218

Query: 223 --------------------------DSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
                                     DS +W T++ G    G    A+++F  MR +GVG
Sbjct: 219 NTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVG 278

Query: 257 YDPVSYIAILTACSHGGLVEKGKK 280
            D  ++ +ILTAC      E+GK+
Sbjct: 279 IDQYTFGSILTACGALAASEEGKQ 302



 Score = 38.5 bits (88), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 180 IHGVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +H + +R   H    +V N +L  Y RSGR+ LA ++FD +P  +  + N L+       
Sbjct: 31  VHCLVLRTLPHPPPTYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHAR 90

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
            +     LF +M +     D VSY A++   S
Sbjct: 91  LLPDMDRLFASMPQR----DAVSYNALIAGFS 118


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 152/417 (36%), Positives = 249/417 (59%), Gaps = 2/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +   + EK++VSW +M+A + Q+     AL   +EM     +P+++ 
Sbjct: 389 MYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIG 448

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L + +  CA  + +R G +IHARI   G + D+ + NAL ++YA+CG +  A + F  + 
Sbjct: 449 LASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEME 508

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D ++ N L+ G++Q+    E+L +F  M   G+KH+V +F+ A+SA ANLA IKQGK+
Sbjct: 509 LKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQ 568

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+        V N+++  Y + G  + A   F  +  ++  SWNT+I      G 
Sbjct: 569 IHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGR 628

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++LF+ M+++G+  + V++I +L ACSH GLVE+G  YF  M  +  ++P   HYA
Sbjct: 629 GLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYA 688

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C++D+ GRAG ++ A K I+ +P+  DA +W  LL AC+++ N+E+G +AA+HL  L+P 
Sbjct: 689 CVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPH 748

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
               Y+LLSN YA   KW    +VR++M+ R  +K PG SW++ ++ V  F V DR+
Sbjct: 749 DSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRL 805



 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 182/340 (53%), Gaps = 10/340 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K+     A  +F  ++ ++ VSW AM++ +AQN L  +AL L R+M      P    
Sbjct: 86  LYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYV 145

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L++VL +C +      G+ IHA+  + G   ++F+ NA+  +Y +CG   LA+ VF ++ 
Sbjct: 146 LSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMP 205

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++N LI G++Q      +L +F EM+  G+  D V+    ++ACA+L  +++G +
Sbjct: 206 HRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQ 265

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H    +  + +   +  S+LD Y + G ++ A  IF+     +   WN +++ +G + +
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMH 296
           +  +  LF  M+  G+  +  +Y  IL  C+    ++ G    +++ + SVK    ++M+
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG----EQIHSLSVKTGFESDMY 381

Query: 297 YA-CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            +  ++D+  + G +E A ++++ L  E D   W +++  
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLK-EKDVVSWTSMIAG 420



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 163/314 (51%), Gaps = 1/314 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F ++  ++ V++N +++  AQ      AL++  EM      P+ VT++++L ACA 
Sbjct: 197 AERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACAS 256

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNIL 129
              L+ G ++H+ + + G++ D  +  +L D+Y KCG +  A  +FN S R  V  +N++
Sbjct: 257 LGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           +V + Q +D ++S  LF +M+  G++ +  ++   +  C     I  G++IH ++++   
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            + ++V+  ++D Y++ G ++ A ++ + L  KD  SW ++I GY        A+  F+ 
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M++ G+  D +   + ++ C+    + +G +    +           +  +V+L  R G 
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGR 496

Query: 310 MEDAVKLIKNLPVE 323
           + +A    + + ++
Sbjct: 497 IREAFSSFEEMELK 510



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 150/320 (46%), Gaps = 3/320 (0%)

Query: 18  IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC-ARGHFLRP 76
           +  +   S    +A F  +    K L L  +    +     +     L AC   G   + 
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQV 60

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
             EIHA+ + +GL     + N L D+Y+K G +  A+ VF  +S RD VS+  ++ GY+Q
Sbjct: 61  VPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQ 120

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
                E+L L+ +M   G+          +S+C       QG+ IH    +    + +FV
Sbjct: 121 NGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFV 180

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            N+++  Y R G   LA ++F  +P +D+ ++NTLI G+   G  + A+ +FE M+  G+
Sbjct: 181 GNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL 240

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
             D V+  ++L AC+  G ++KG +    +    +    +    ++DL  + G +E A+ 
Sbjct: 241 SPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETAL- 299

Query: 316 LIKNLPVEPDANIWGALLGA 335
           +I N     +  +W  +L A
Sbjct: 300 VIFNSSDRTNVVLWNLMLVA 319


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 160/427 (37%), Positives = 250/427 (58%), Gaps = 17/427 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K    A A  +F  + E+N+V+WN+++  + QN    +AL++   M      P+ VT
Sbjct: 191 MYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVT 250

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           L +V+ ACA    L+ G +IHAR+++      DL L NAL DMYAKC  +N A+ VF+ +
Sbjct: 251 LASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           S R+ VS   ++ GY++ +    +  +FS+M     + +VVS+   I+        ++  
Sbjct: 311 SIRNVVSETSMVSGYARAASVKAARFMFSKM----TQRNVVSWNALIAGYTQNGENEEAL 366

Query: 179 EIHGVTIRKH-----------LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
            +  +  R+            L + +FV NS++D Y + G I+  +++F+ +  +D  SW
Sbjct: 367 RLFRLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSW 426

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           N +I+GY   G    A+ +F  M   G   D V+ I +L ACSH GLVE+G+ YF  M+ 
Sbjct: 427 NAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE 486

Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAW 347
             + P + HY CMVDLLGRAG + +A  LI+ +PV PDA +WG+LL AC+++GN+E+G  
Sbjct: 487 HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKH 546

Query: 348 AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQ 407
           AAE L  + P + G Y+LLSNMYAE G+W +  +VR+LM+ +   K PGCSW++    V 
Sbjct: 547 AAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVH 606

Query: 408 DFVVNDR 414
            F+V D+
Sbjct: 607 VFLVKDK 613



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 180/344 (52%), Gaps = 18/344 (5%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
            KS    EA+ LF ++ E +  SWN+MV+ FAQ+    ++L+   +M   +   N  +  
Sbjct: 92  TKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFG 151

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           + L ACA    L  G ++HA + +   + D+++ +AL DMY+KCG +  A+ VF+ +  R
Sbjct: 152 SALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIER 211

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + V++N LI  Y Q    SE+L +F  M   G++ D V+    +SACA+L A+K+G +IH
Sbjct: 212 NLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIH 271

Query: 182 GVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
              ++ +     L + N+++D Y +  +++ A ++FD + +++  S  +++ GY     V
Sbjct: 272 ARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASV 331

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-- 298
             A  +F  M +  V    VS+ A++   +  G  E+  + F  ++ +S+ PT   +   
Sbjct: 332 KAARFMFSKMTQRNV----VSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNL 387

Query: 299 ---------CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                     ++D+  + G +ED  ++ + +  E D   W A++
Sbjct: 388 LKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMK-ERDCVSWNAII 430



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 124/258 (48%), Gaps = 36/258 (13%)

Query: 45  LVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104
           LVR++ +    PNS     +L +C R    R  + +HARI+    + ++F+ N L D+Y 
Sbjct: 6   LVRDLYL----PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYG 61

Query: 105 KCGCLNLAQNVFN--------------------------------ISFRDEVSYNILIVG 132
           KC CL+ A+ +F+                                +   D+ S+N ++ G
Sbjct: 62  KCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSG 121

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           ++Q     ESL  F +M       +  SF  A+SACA L  +  G ++H +  +    T 
Sbjct: 122 FAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTD 181

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +++ ++++D Y++ G +  A ++F  +  ++  +WN+LI  Y   G    A+ +F  M +
Sbjct: 182 VYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMD 241

Query: 253 DGVGYDPVSYIAILTACS 270
            G+  D V+  ++++AC+
Sbjct: 242 SGLEPDEVTLASVVSACA 259


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  304 bits (779), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 153/411 (37%), Positives = 250/411 (60%), Gaps = 1/411 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS+   +A  +F  +AE+N++S+NAM+  ++      +AL+L  EM +    P+ +T
Sbjct: 283 MYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLT 342

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L   A    L   K+IH  II+ G++ DLF  +AL D+Y+KC  +  A++VF  ++
Sbjct: 343 FVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMN 402

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V +N +  GY+Q  +  E+L L+S ++    K +  +F   I+A +NLA+++ G++
Sbjct: 403 EKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQ 462

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   ++  L    FV N+++D Y + G I+ A K+F+    +D   WN++I  +   GE
Sbjct: 463 FHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGE 522

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ +F  M ++G+  + V+++A+L+ACSH G VE G  +F+ M    +KP   HYAC
Sbjct: 523 AEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPGFGIKPGTEHYAC 582

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +V LLGR+G + +A + I+ +P+EP A +W +LL ACRI GNVELG +AAE      P+ 
Sbjct: 583 VVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKD 642

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
            G YILLSN++A  G W +  KVR+ M S E  K PG SW++  ++V  F+
Sbjct: 643 SGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFI 693



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 174/333 (52%), Gaps = 2/333 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K+     A  +F  + EK  V+W  ++A + +      +L+L  +M   N  P+   +
Sbjct: 82  YSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVV 141

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           ++VL AC+   FL  GK+IHA ++R+G   D+ + N L D Y KC  +   + +F+ +  
Sbjct: 142 SSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVV 201

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ +S+  +I GY Q S   E++ LF EM  LG K D  +    +++C +L A++QG+++
Sbjct: 202 KNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQV 261

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H  TI+ +L ++ FV N ++D Y +S  +  A K+FD +  ++  S+N +I GY    ++
Sbjct: 262 HAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKL 321

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A+ LF  MR        ++++++L   +    +E  K+    +    V       + +
Sbjct: 322 SEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSAL 381

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +D+  +   ++DA  + + +  E D  +W A+ 
Sbjct: 382 IDVYSKCSYVKDARHVFEEMN-EKDIVVWNAMF 413



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 140/265 (52%), Gaps = 3/265 (1%)

Query: 54  EFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ 113
           E PN   L +V+ AC +   +  G ++H  ++R G + D+++  +L D Y+K G + +A+
Sbjct: 33  EHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVAR 92

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
            VF+ +  +  V++  +I GY++      SL LF++MR   +  D       +SAC+ L 
Sbjct: 93  LVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLE 152

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
            ++ GK+IH   +R+     + V N ++DFYT+  R+    K+FD + VK+  SW T+I 
Sbjct: 153 FLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMIS 212

Query: 233 GYGMLGEVD-TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
           GY M    D  A+ LF  M   G   D  +  ++LT+C     +E+G++        +++
Sbjct: 213 GY-MQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLE 271

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKL 316
             E     ++D+  ++ L+ DA K+
Sbjct: 272 SNEFVKNGLIDMYAKSNLLXDAKKV 296



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 6/150 (4%)

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKH-DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH 190
           GYS+     E+L +F +++    +H +       I AC  L  +++G ++HG  +R    
Sbjct: 15  GYSE-----EALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFD 69

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
             ++V  S++DFY+++G I++A  +FD L  K + +W T+I GY   G    ++ LF  M
Sbjct: 70  QDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQM 129

Query: 251 REDGVGYDPVSYIAILTACSHGGLVEKGKK 280
           RE  V  D     ++L+ACS    +E GK+
Sbjct: 130 RETNVVPDRYVVSSVLSACSMLEFLEGGKQ 159


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  304 bits (779), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 150/417 (35%), Positives = 247/417 (59%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     +A  +F  + +KN+VSW AM++ ++Q     +AL L  EM   +  PN  T
Sbjct: 134 LYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFT 193

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              +L +C        G++IH+  I++     +F+ ++L DMYAK G +  A  VF+ + 
Sbjct: 194 FATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLP 253

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V+   +I GY+Q     E+L LF ++++ GM  + V++   ++A + LAA+  GK+
Sbjct: 254 ERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQ 313

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +R   ++++ + NS++D Y++ G +  A +IFD +P +   SWN +++GY   G 
Sbjct: 314 VHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGM 373

Query: 240 VDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEM--QADSVKPTEMH 296
               + LF+ MRE+  V  D ++Y+A+L+ CSHG L + G + F  M    D ++P   H
Sbjct: 374 AREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGH 433

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y C+VDLLGRAG +E+A   IK +P  P A IWG+LLG+CR++ +VE+G    + L  L+
Sbjct: 434 YGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELE 493

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P++ G Y++LSN+YA AGKW++   +R+LM+ +   K PG SWV+    V  F  +D
Sbjct: 494 PENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASD 550



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 141/272 (51%), Gaps = 2/272 (0%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
            +L  C     +R G+ +H  +I+      ++L   L  +Y KC CL  A+ +F+ +  +
Sbjct: 95  TILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQK 154

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + VS+  +I  YSQ     E+L+LF EM     + +  +F   +++C      + G++IH
Sbjct: 155 NVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIH 214

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
            + I+++  +H+FV +S+LD Y +SGRI  A+ +F CLP +D  +   +I GY  +G  +
Sbjct: 215 SIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDE 274

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            A+ LF  ++ +G+  + V+Y ++LTA S    +  GK+    +         +    ++
Sbjct: 275 EALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLI 334

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           D+  + G +  A ++  ++P E     W A+L
Sbjct: 335 DMYSKCGNVCYARRIFDSMP-ERTCISWNAML 365



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 117/279 (41%), Gaps = 39/279 (13%)

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           +M +LG +     +   ++ C +  AI++G+ +H   I+      +++   ++  Y +  
Sbjct: 80  QMAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCD 139

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
            +  A ++FD +P K+  SW  +I  Y   G    A+NLF  M       +  ++  ILT
Sbjct: 140 CLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILT 199

Query: 268 ACSHGGLVEKGKKYFD------------------EMQADSVKPTEMH-----------YA 298
           +C      E G++                     +M A S +  + H            A
Sbjct: 200 SCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVA 259

Query: 299 CMVDLLGRA--GLMEDAVKLIKNLPVE---PDANIWGALLGACRIYGNVELGAWAAEHLF 353
           C   + G A  GL E+A+KL + L +E    ++  + ++L A  + G   L      H  
Sbjct: 260 CTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTA--LSGLAALNHGKQVHSH 317

Query: 354 MLKPQHCGYYILLS---NMYAEAGKWDEASKVRELMKSR 389
           +L+     Y +LL+   +MY++ G    A ++ + M  R
Sbjct: 318 VLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPER 356


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  304 bits (779), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 162/416 (38%), Positives = 253/416 (60%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  +   A  +F  + EK++VSW AM+A +AQ+    +AL L +EM       +++ 
Sbjct: 517 MYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIG 576

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             + + ACA    L  G++IHA+    G + DL + NAL  +YA+CG +  A   F+  F
Sbjct: 577 FASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIF 636

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+N LI G++Q+  C E+LSLFS+M   G + +  +F  A+SA AN+A +K GK+
Sbjct: 637 SKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQ 696

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH + I+    +   V+N ++  Y + G ID A + F  +P K+  SWN ++ GY   G 
Sbjct: 697 IHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGH 756

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A++LFE M++ GV  + V+++ +L+ACSH GLV++G KYF  M +   + P   HYA
Sbjct: 757 GFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYA 816

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGR+GL+  A + ++ +P++PDA +   LL AC ++ N+++G +AA HL  L+P+
Sbjct: 817 CVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPK 876

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y+LLSNMYA  GKW    + R++MK R  KK PG SW++  + V  F   D+
Sbjct: 877 DSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQ 932



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 179/336 (53%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K+     A  +F  + +++ VSW AM++  +Q+  E +A+ L  +M     +P    
Sbjct: 214 LYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYI 273

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            ++VL AC +  F + G+++H  ++++G + + ++ NAL  +Y++ G    A+ VFN   
Sbjct: 274 FSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAML 333

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RDEVSYN LI G SQ     ++L LF +M L  +K D V+    +SAC+++ A+  GK+
Sbjct: 334 QRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ 393

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   I+  + + + +  ++LD Y +   I  A++ F     ++   WN +++ YG+L  
Sbjct: 394 FHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDN 453

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           ++ +  +F  M+ +G+  +  +Y +IL  CS    V+ G++   ++     +      + 
Sbjct: 454 LNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSV 513

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++D+  + G ++ A+K+ + L  E D   W A++  
Sbjct: 514 LIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIAG 548



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 179/344 (52%), Gaps = 2/344 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y++      A  +F+ + +++ VS+N++++  +Q     KAL+L ++M +    P+ VT
Sbjct: 315 LYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVT 374

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + ++L AC+    L  GK+ H+  I+ G++ D+ L  AL D+Y KC  +  A   F +  
Sbjct: 375 VASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTE 434

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             + V +N+++V Y    + +ES  +F++M++ G++ +  ++   +  C++L A+  G++
Sbjct: 435 TENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQ 494

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   ++     +++V++ ++D Y + G++D A KIF  L  KD  SW  +I GY    +
Sbjct: 495 IHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEK 554

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+NLF+ M++ G+  D + + + ++AC+    + +G++   +               
Sbjct: 555 FAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNA 614

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           +V L  R G + DA      +    D   W +L+      G+ E
Sbjct: 615 LVSLYARCGKVRDAYFAFDKI-FSKDNISWNSLISGFAQSGHCE 657



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 160/382 (41%), Gaps = 47/382 (12%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           K  RP  + + F    +K +    A+   ++ +  E   +  +  M       NS T   
Sbjct: 17  KQFRPVVSIFFFF---QKFLEHNTALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLW 73

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L  C    +   G ++H +I++ G   ++ L   L D+Y   G L+ A  VF+ +  R 
Sbjct: 74  LLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRP 133

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL-AAIKQGKEIH 181
              +N ++  +         L LF  M    +K D  ++ G +  C          ++IH
Sbjct: 134 LSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIH 193

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
             TI       LFV N ++D Y ++G ++ A K+FD L  +DS SW  ++ G    G  +
Sbjct: 194 ARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEE 253

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG------------ 278
            A+ LF  M   GV   P  + ++L+AC+           HG ++++G            
Sbjct: 254 EAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALV 313

Query: 279 ------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE--- 323
                       ++ F+ M    ++  E+ Y  ++  L + G  + A++L K + ++   
Sbjct: 314 TLYSRLGNFIPAEQVFNAM----LQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLK 369

Query: 324 PDANIWGALLGACRIYGNVELG 345
           PD     +LL AC   G + +G
Sbjct: 370 PDCVTVASLLSACSSVGALLVG 391


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  304 bits (778), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 155/416 (37%), Positives = 257/416 (61%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+  S     + +F N+A+KN+VSW AM+ ++ +  L  K   L++EM +    P+   
Sbjct: 555 MYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFA 614

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T+VL   A    L+ GK +H   IR G+   L + NAL +MY  C  +  A+ VF+ ++
Sbjct: 615 VTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVT 674

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+N LI GYS+ +  +ES SLFS+M LL  K + V+    + A A+++++++G+E
Sbjct: 675 NKDIISWNTLIGGYSRNNFANESFSLFSDM-LLQFKPNTVTMTCILPAVASISSLERGRE 733

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +R+      + +N+++D Y + G + +A  +FD L  K+  SW  +I GYGM G 
Sbjct: 734 IHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGC 793

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LFE MR  GV  D  S+ AIL AC H GL  +G K+F+ M+ +  ++P   HY 
Sbjct: 794 GKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYT 853

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLL   G +++A + I+++P+EPD++IW +LL  CRI+ +V+L    A+ +F L+P+
Sbjct: 854 CIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPE 913

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + GYY+LL+N+YAEA +W+   K++  +  R  ++N GCSW++ R +V  F+ ++R
Sbjct: 914 NTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNR 969



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 197/426 (46%), Gaps = 46/426 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAKS+    A  +F  +  ++ +SWN++++    N L  +A++L   M +     +S TL
Sbjct: 455 YAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTL 514

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            +VLPACAR H+   G+ +H   ++ GL  +  L NAL DMY+ C   +    +F N++ 
Sbjct: 515 LSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQ 574

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ VS+  +I  Y++     +   L  EM L G+K DV +    +   A   ++KQGK +
Sbjct: 575 KNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSV 634

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  IR  +   L VAN++++ Y     ++ A  +FD +  KD  SWNTLI GY      
Sbjct: 635 HGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFA 694

Query: 241 DTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKY--------FDEMQADSV 290
           + + +LF  M    + + P  V+   IL A +    +E+G++         F E    S 
Sbjct: 695 NESFSLFSDML---LQFKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSN 751

Query: 291 KPTEMHYAC-----------------------MVDLLGRAGLMEDAVKLIKNL---PVEP 324
              +M+  C                       M+   G  G  +DAV L + +    VEP
Sbjct: 752 ALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEP 811

Query: 325 DANIWGALLGACRIYGNVELGAW----AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
           D   + A+L AC  +  +    W    A    + ++P+   +Y  + ++ +  G   EA 
Sbjct: 812 DTASFSAILYAC-CHSGLTAEGWKFFNAMRKEYKIEPK-LKHYTCIVDLLSHTGNLKEAF 869

Query: 381 KVRELM 386
           +  E M
Sbjct: 870 EFIESM 875



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 143/281 (50%), Gaps = 11/281 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y++     +A  +F ++  ++ +SWN+ ++ +  N    +A+ L  +M       +SVT
Sbjct: 242 LYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVT 301

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDL---------FLTNALTDMYAKCGCLNL 111
           + +VLPACA   F   GK +H   ++ GL +DL          L + L  MY KCG +  
Sbjct: 302 VLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGS 361

Query: 112 AQNVFNI--SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA 169
           A+ VF+   S  +   +N+++ GY++ ++  ESL LF +M  LG+  D  +    +    
Sbjct: 362 ARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCIT 421

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
            L+  + G   HG  ++    T   V N+++ FY +S  ID A  +FD +P +D+ SWN+
Sbjct: 422 CLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNS 481

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
           +I G    G    AI LF  M   G   D  + +++L AC+
Sbjct: 482 VISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACA 522



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 154/335 (45%), Gaps = 22/335 (6%)

Query: 22  NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81
           ++  W ++++ +A+     + + L R+M      P++  ++ VL   A    +  G+ IH
Sbjct: 162 DVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIH 221

Query: 82  ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCS 140
             + + GL     + NAL  +Y++CGC+  A  VF+ +  RD +S+N  I GY       
Sbjct: 222 GLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHD 281

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
            ++ LFS+M   G +   V+ +  + ACA L     GK +HG +++  L   L    S +
Sbjct: 282 RAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGI 341

Query: 201 D---------FYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGMLGEVDTAINLFEAM 250
           D          Y + G +  A ++FD +P K +   WN ++ GY    E + ++ LFE M
Sbjct: 342 DEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQM 401

Query: 251 REDGVGYDPVSYIAILT-----ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
            E G+  D  +   +L      +C+  GLV  G  Y  ++   +          ++    
Sbjct: 402 HELGITPDEHALSCLLKCITCLSCARDGLVAHG--YLVKLGFGTQCAV---CNALISFYA 456

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           ++ ++++AV +   +P   D   W +++  C   G
Sbjct: 457 KSNMIDNAVLVFDRMP-HQDTISWNSVISGCTSNG 490



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 15/286 (5%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLN--FDLFLTNALTDMYAKCGCLNLAQNVFN---I 118
           V+  C     L   +  HA ++R G        L   L   Y KCG L  A+ VF+    
Sbjct: 100 VVQLCGEERSLEAARRAHA-LVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPP 158

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              D   +  L+  Y++  D  E +SLF +M+  G+  D  +    +   A+L +I +G+
Sbjct: 159 RVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGE 218

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IHG+  +  L     VAN+++  Y+R G ++ A ++FD +  +D+ SWN+ I GY   G
Sbjct: 219 VIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNG 278

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD-EMQADSVKPTEMHY 297
             D A++LF  M  +G     V+ +++L AC+  G    GK      M++  +   E   
Sbjct: 279 WHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQ 338

Query: 298 ACMVDLLG--------RAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           + + + LG        + G M  A ++   +P + + ++W  ++G 
Sbjct: 339 SGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGG 384


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  304 bits (778), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 156/421 (37%), Positives = 255/421 (60%), Gaps = 12/421 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A  +F  I  K++VSWNAM++ +A+     +AL+L ++M   N  P+  T+
Sbjct: 167 YASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 226

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             V+ ACA+   +  G+++H+ I   G   +L + NAL D+Y+KCG L  A  +F  + +
Sbjct: 227 VTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPY 286

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D +S+N LI GY+  +   E+L LF EM   G   + V+ +  + ACA+L AI  G+ I
Sbjct: 287 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 346

Query: 181 HGVTIRKHLHTHLFVAN------SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           H V I K L     VAN      S++D Y + G I+ A+++F+ +  K  +SWN +I G+
Sbjct: 347 H-VYIDKRLKG---VANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGF 402

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
            M G  D + ++F  MR++G+  D ++++ +L+ACSH G+++ G+  F  M  D  + P 
Sbjct: 403 AMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPK 462

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY CM+DLLG +GL ++A ++I  + +EPD  IW +LL AC+++GNVELG   A++L 
Sbjct: 463 LEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLI 522

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            ++P++ G Y+LLSN+YA AG+W+E +  R L+  +  KK PGCS ++    V +F++ D
Sbjct: 523 KIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGD 582

Query: 414 R 414
           +
Sbjct: 583 K 583



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 178/365 (48%), Gaps = 37/365 (10%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  I E N++ WN M    A +   + AL+L   M      PNS T   +L +CA+   
Sbjct: 47  VFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKA 106

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
            + G++IH  +++ G + DL++  +L  MY + G L  A  VF+                
Sbjct: 107 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKG 166

Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
                           I  +D VS+N +I GY++T +  E+L LF +M    ++ D  + 
Sbjct: 167 YASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 226

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           +  +SACA   +I+ G+++H         ++L + N+++D Y++ G ++ A  +F+ LP 
Sbjct: 227 VTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPY 286

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-- 279
           KD  SWNTLI GY  +     A+ LF+ M   G   + V+ ++IL AC+H G ++ G+  
Sbjct: 287 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 346

Query: 280 -KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
             Y D+        + +  + ++D+  + G +E A ++  ++ +    + W A++    +
Sbjct: 347 HVYIDKRLKGVANASSLRTS-LIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAM 404

Query: 339 YGNVE 343
           +G  +
Sbjct: 405 HGRAD 409



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 135/299 (45%), Gaps = 36/299 (12%)

Query: 72  HFLRPGKEIHARIIRKGLNFDLFLTNALTD---MYAKCGCLNLAQNVF-NISFRDEVSYN 127
             L+  + IHA++I+ GL+   +  + L +   +      L  A +VF  I   + + +N
Sbjct: 1   QILQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWN 60

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            +  G++ +SD   +L L+  M  LG+  +  +F   + +CA   A K+G++IHG  ++ 
Sbjct: 61  TMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKL 120

Query: 188 HLHTHLFVANSILDFYTRSGR-------------------------------IDLANKIF 216
                L+V  S++  Y ++GR                               I+ A K+F
Sbjct: 121 GCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMF 180

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
           D +PVKD  SWN +I GY   G    A+ LF+ M +  V  D  + + +++AC+  G +E
Sbjct: 181 DEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE 240

Query: 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            G++    +              ++DL  + G +E A  L + LP + D   W  L+G 
Sbjct: 241 LGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYK-DVISWNTLIGG 298


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  303 bits (777), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 148/415 (35%), Positives = 248/415 (59%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +   +F     ++++SWNA+++ F  N      L++  +M      PN  T
Sbjct: 475 MYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYT 534

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L +C+    +  GK++HA+I++  L+ + F+  AL DMYAK   L  A+ +FN + 
Sbjct: 535 FISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLI 594

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD  ++ +++ GY+Q     +++  F +M+  G+K +  +   ++S C+ +A +  G++
Sbjct: 595 KRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ 654

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + I+      +FVA++++D Y + G ++ A  +FD L  +D+ SWNT+I GY   G+
Sbjct: 655 LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQ 714

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+  FEAM ++G   D V++I +L+ACSH GL+E+GKK+F+ + +   + PT  HYA
Sbjct: 715 GGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYA 774

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGRAG   +    I+ + +  +  IW  +LGAC+++GN+E G  AA  LF L+P+
Sbjct: 775 CMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPE 834

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               YILLSNM+A  G WD+ + VR LM +R  KK PGCSWV+   +V  F+ +D
Sbjct: 835 IDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHD 889



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 147/273 (53%), Gaps = 2/273 (0%)

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           + +L  CA    L  GK IH ++I+ G+N D  L N+L ++YAKCG  N A  VF  I  
Sbjct: 132 SGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE 191

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VS+  LI G+      S +++LF EMR  G++ +  ++  A+ AC+    ++ GK++
Sbjct: 192 RDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQV 251

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   I+    + LFV ++++D Y + G + LA ++F C+P +++ SWN L+ G+  +G+ 
Sbjct: 252 HAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDA 311

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           +  +NLF  M    + +   +   +L  C++ G +  G+           +  E    C+
Sbjct: 312 EKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCL 371

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           VD+  + GL  DA+K+   +  +PD   W A++
Sbjct: 372 VDMYSKCGLAGDALKVFVRIE-DPDVVSWSAII 403



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 157/336 (46%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK      A  +F  + ++N VSWNA++  FAQ     K L L   M       +  T
Sbjct: 273 LYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFT 332

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L+ VL  CA    LR G+ +H+  IR G   D F++  L DMY+KCG    A  VF  I 
Sbjct: 333 LSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIE 392

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VS++ +I    Q     E+  +F  MR  G+  +  +    +SA  +L  +  G+ 
Sbjct: 393 DPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGES 452

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH    +        V N+++  Y + G +    ++F+    +D  SWN L+ G+     
Sbjct: 453 IHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNET 512

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            DT + +F  M  +G   +  ++I+IL +CS    V+ GK+   ++  +S+   +     
Sbjct: 513 CDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTA 572

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +VD+  +   +EDA + I N  ++ D   W  ++  
Sbjct: 573 LVDMYAKNRFLEDA-ETIFNRLIKRDLFAWTVIVAG 607



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 158/339 (46%), Gaps = 12/339 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK      A  +F  I E+++VSW A++  F        A+ L  EM       N  T
Sbjct: 172 VYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFT 231

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
               L AC+    L  GK++HA  I+ G   DLF+ +AL D+YAKCG + LA+ VF  + 
Sbjct: 232 YATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMP 291

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N L+ G++Q  D  + L+LF  M    +     +    +  CAN   ++ G+ 
Sbjct: 292 KQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQI 351

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + IR       F++  ++D Y++ G    A K+F  +   D  SW+ +I      G+
Sbjct: 352 VHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQ 411

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY-- 297
              A  +F+ MR  GV  +  +  ++++A +     + G  Y+ E     V      Y  
Sbjct: 412 SREAAEVFKRMRHSGVIPNQFTLASLVSAAT-----DLGDLYYGESIHACVCKYGFEYDN 466

Query: 298 -AC--MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
             C  +V +  + G ++D  ++ +      D   W ALL
Sbjct: 467 TVCNALVTMYMKIGSVQDGCRVFE-ATTNRDLISWNALL 504



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 9/187 (4%)

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           + G +  CA+   + +GK IHG  I+  ++    + NS+++ Y + G  + A K+F  +P
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            +D  SW  LI G+   G    A+NLF  MR +GV  +  +Y   L ACS    +E GK 
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGK- 249

Query: 281 YFDEMQADSVKPTEMH----YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
              ++ A+++K  +       + +VDL  + G M  A ++   +P + +A  W ALL   
Sbjct: 250 ---QVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMP-KQNAVSWNALLNGF 305

Query: 337 RIYGNVE 343
              G+ E
Sbjct: 306 AQMGDAE 312


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  303 bits (777), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 151/418 (36%), Positives = 255/418 (61%), Gaps = 6/418 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A  LF  I+ K++VSWNAM++ + +     +AL+L ++M   N  P+  T+
Sbjct: 141 YASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTM 200

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             V+ ACA+   +  G+++H+ I   G   ++ + N L D+Y+KCG +  A  +F  ++ 
Sbjct: 201 VTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAK 260

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D +S+N LI G++  +   E+L LF EM   G   + V+ +  + ACA+L AI  G+ I
Sbjct: 261 KDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWI 320

Query: 181 HGVTIRKHLHTHLFVAN---SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           H V I K L      ++   S++D Y + G I+ A ++FD +  +  +SWN +I G+ M 
Sbjct: 321 H-VYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMH 379

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G+ + A +LF  MR++G+  D ++++ +L+ACSH G+++ G+  F  M  D  + P   H
Sbjct: 380 GKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEH 439

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y CM+DLLG  GL ++A ++I+ +P+EPD  IW +LL AC+++ NVELG   A++L  ++
Sbjct: 440 YGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIE 499

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P++ G Y+LLSN+YA AG+WD+ +K+R L+  +  KK PGCS ++    V +F++ D+
Sbjct: 500 PENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDK 557



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 172/361 (47%), Gaps = 35/361 (9%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  I E N++ WN M    A N   + AL+L   M      PNS +   +L +CA+   
Sbjct: 21  IFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKA 80

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
           L  G++IH  +++ G + D+++  +L  MYA+ G L  A  VF+                
Sbjct: 81  LIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITG 140

Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
                           IS +D VS+N +I GY +T +  E+L L+ +M    +K D  + 
Sbjct: 141 YASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTM 200

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           +  +SACA   +I+ G+++H         +++ + N ++D Y++ G ++ A  +F  L  
Sbjct: 201 VTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAK 260

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-- 279
           KD  SWNTLI G+  +     A+ LF+ M   G   + V+ +++L AC+H G ++ G+  
Sbjct: 261 KDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWI 320

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
             +   +   V         ++D+  + G +E A ++  ++     ++ W A++    ++
Sbjct: 321 HVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSS-WNAMIFGFAMH 379

Query: 340 G 340
           G
Sbjct: 380 G 380



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 125/246 (50%), Gaps = 5/246 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K      A  LF  +A+K+++SWN ++       L  +AL L +EM    E PN VT
Sbjct: 241 LYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVT 300

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR--KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           + +VLPACA    +  G+ IH  I +  KG+     L  +L DMYAKCG +  A+ VF+ 
Sbjct: 301 MLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDS 360

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  R   S+N +I G++     + +  LFS+MR  G+  D ++F+G +SAC++   +  G
Sbjct: 361 MLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLG 420

Query: 178 KEI-HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYG 235
           + I   ++    +   L     ++D     G    A ++   +P++ D   W +L+    
Sbjct: 421 RHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACK 480

Query: 236 MLGEVD 241
           M   V+
Sbjct: 481 MHNNVE 486


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  303 bits (777), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 159/455 (34%), Positives = 254/455 (55%), Gaps = 43/455 (9%)

Query: 2   YAKSSRPAEASYLFHNI----AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           Y++     EA  LF  +     E N+VSWN M+A F  N    +A+ + R M +   +P+
Sbjct: 180 YSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPD 239

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL-------- 109
             T++ VLPA      +  G ++H  +I++GL  D F+ +A+ DMY KCGC+        
Sbjct: 240 GSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFD 299

Query: 110 -----------------------NLAQNVFNISFRDE------VSYNILIVGYSQTSDCS 140
                                  + A  VFN  F+D+      V++  +I   SQ     
Sbjct: 300 EVEEMEIGSLNAFLTGLSRNGMVDTALEVFN-KFKDQKMELNVVTWTSIIASCSQNGKDL 358

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
           E+L LF +M+  G++ + V+    I AC N++A+  GKEIH  ++R+ +   ++V ++++
Sbjct: 359 EALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALI 418

Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
           D Y + GRI LA + FD +   +  SWN ++ GY M G+    + +F  M + G   D V
Sbjct: 419 DMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLV 478

Query: 261 SYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319
           ++  +L+AC+  GL E+G + ++ M  +  ++P   HYAC+V LL R G +E+A  +IK 
Sbjct: 479 TFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKE 538

Query: 320 LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA 379
           +P EPDA +WGALL +CR++ N+ LG  AAE LF L+P + G YILLSN+YA  G WDE 
Sbjct: 539 MPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEE 598

Query: 380 SKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +++RE+MKS+  +KNPG SW++   +V   +  D+
Sbjct: 599 NRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQ 633



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 154/336 (45%), Gaps = 36/336 (10%)

Query: 6   SRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVL 65
           S P  +  L  ++    + S+++++  FA++      L     +      P++  L + +
Sbjct: 52  STPQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAI 111

Query: 66  PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEV 124
            +CA    L PG+++HA     G   D  + ++LT MY KC  +  A+ +F+ +  RD V
Sbjct: 112 KSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVV 171

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN-------------- 170
            ++ +I GYS+     E+  LF EMR  G++ ++VS+ G ++   N              
Sbjct: 172 VWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMM 231

Query: 171 ---------------------LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
                                L  +  G ++HG  I++ L +  FV +++LD Y + G +
Sbjct: 232 LVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCV 291

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
              +++FD +   +  S N  + G    G VDTA+ +F   ++  +  + V++ +I+ +C
Sbjct: 292 KEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASC 351

Query: 270 SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           S  G   +  + F +MQA  V+P  +    ++   G
Sbjct: 352 SQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACG 387



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 110/245 (44%), Gaps = 7/245 (2%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR----DEVSYNIL 129
           L   ++ HA I+R  L  D  LT +L   YA    L+  Q    +S         S++ L
Sbjct: 16  LSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSL 75

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I  ++++      L+ FS +  L +  D      AI +CA+L A+  G+++H        
Sbjct: 76  IHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGF 135

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            T   VA+S+   Y +  RI  A K+FD +P +D   W+ +I GY  LG V+ A  LF  
Sbjct: 136 LTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGE 195

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           MR  GV  + VS+  +L    + G  ++    F  M      P     +C   +L   G 
Sbjct: 196 MRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSC---VLPAVGC 252

Query: 310 MEDAV 314
           +ED V
Sbjct: 253 LEDVV 257



 Score = 45.8 bits (107), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R   A   F  ++  N+VSWNA++  +A +    + +++   M    + P+ VT
Sbjct: 420 MYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVT 479

Query: 61  LTNVLPACARGHFLRPG 77
            T VL ACA+      G
Sbjct: 480 FTCVLSACAQNGLTEEG 496


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  303 bits (777), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 165/439 (37%), Positives = 254/439 (57%), Gaps = 35/439 (7%)

Query: 10  EASYL-FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           +++YL F  I EK+IVSWN+M++ F Q     +ALQL + M + N  PN VT+  VL AC
Sbjct: 183 DSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSAC 242

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL------------------- 109
           A+   L  G+     I R G++ +L L+NA+ DMY KCG L                   
Sbjct: 243 AKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWT 302

Query: 110 ------------NLAQNVFNISFRDEVS-YNILIVGYSQTSDCSESLSLFSEMRL-LGMK 155
                       + A+ VF++  R++++ +N LI  Y Q     E+L++F E++L    K
Sbjct: 303 TMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTK 362

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
            + V+    ++ACA L A+  G  IH    ++ +  +  +  S++D Y++ G ++ A ++
Sbjct: 363 PNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEV 422

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275
           F  +  +D   W+ +I G  M G    AI+LF  M+E  V  + V++  +L ACSH GLV
Sbjct: 423 FYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLV 482

Query: 276 EKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
           ++G+ +F++M+    V P   HYACMVD+LGRAG +E+AV+LI+ +P+ P A++WGALLG
Sbjct: 483 DEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLG 542

Query: 335 ACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394
           ACRIYGNVEL   A   L      + G Y+LLSN+YA+AGKWD  S++R+ MK    +K 
Sbjct: 543 ACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKE 602

Query: 395 PGCSWVQTRDEVQDFVVND 413
           PGCS ++    + +F+V D
Sbjct: 603 PGCSSIEVNGIIHEFLVGD 621



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 191/396 (48%), Gaps = 51/396 (12%)

Query: 6   SRPAEASY---LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH--NEFPNSVT 60
           S P+   Y   +F  I   N+ +WN ++  FA +   ++ L +  +M +H    FPNS T
Sbjct: 75  SSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQM-LHESQRFPNSYT 133

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V+ A      L  G+ IH  +++     DLF++N+L   Y+  G L+ A  VF+ I 
Sbjct: 134 FPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIV 193

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+N +I G+ Q     E+L LF  M++   + + V+ +G +SACA    ++ G+ 
Sbjct: 194 EKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRW 253

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
                 R  +  +L ++N++LD Y + G ++ A ++FD +  KD  SW T+I GY  +G+
Sbjct: 254 ACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGD 313

Query: 240 VDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
            D A  +F+ M RED   ++     A++++    G  ++    F E+Q + + KP E+  
Sbjct: 314 YDAARRVFDVMPREDITAWN-----ALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTL 368

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           A                                + L AC   G ++LG W   H+++ K 
Sbjct: 369 A--------------------------------STLAACAQLGAMDLGGWI--HVYIKKQ 394

Query: 358 Q-HCGYYILLS--NMYAEAGKWDEASKVRELMKSRE 390
                ++I  S  +MY++ G  ++A +V   ++ R+
Sbjct: 395 GIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRD 430



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 171/348 (49%), Gaps = 22/348 (6%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG-----CLNL 111
           N  T+  ++  CA    L   K++HA ++R GL FD     + T ++  C       L+ 
Sbjct: 29  NPSTVPILIDKCANKKHL---KQLHAHMLRTGLFFD---PPSATKLFTACALSSPSSLDY 82

Query: 112 AQNVFNISFRDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-DVVSFMGAISACA 169
           A  VF+   R  + ++N LI  ++ +    + L +F +M     +  +  +F   I A  
Sbjct: 83  ACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAAT 142

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
            ++++  G+ IHG+ ++    + LF++NS++ FY+  G +D A  +F  +  KD  SWN+
Sbjct: 143 EVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNS 202

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS 289
           +I G+   G  + A+ LF+ M+ +    + V+ + +L+AC+    +E G+   D ++ + 
Sbjct: 203 MISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNG 262

Query: 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAA 349
           +    +    M+D+  + G +EDA +L   +  E D   W  ++      G+ +    AA
Sbjct: 263 IDINLILSNAMLDMYVKCGSLEDARRLFDKME-EKDIVSWTTMIDGYAKVGDYD----AA 317

Query: 350 EHLFMLKPQH--CGYYILLSNMYAEAGKWDEASKV-RELMKSREAKKN 394
             +F + P+     +  L+S+ Y + GK  EA  + REL  ++  K N
Sbjct: 318 RRVFDVMPREDITAWNALISS-YQQNGKPKEALAIFRELQLNKNTKPN 364



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 18/253 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPNSVT 60
           YAK      A  +F  +  ++I +WNA+++++ QN    +AL + RE+ ++ N  PN VT
Sbjct: 308 YAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVT 367

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L + L ACA+   +  G  IH  I ++G+  +  +T +L DMY+KCG L  A  VF ++ 
Sbjct: 368 LASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVE 427

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
            RD   ++ +I G +       ++ LFS+M+   +K + V+F   + AC++   + +G  
Sbjct: 428 RRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRL 487

Query: 178 -----KEIHGVTI-RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTL 230
                + ++GV    KH          ++D   R+G ++ A ++ + +P+  SAS W  L
Sbjct: 488 FFNQMRPVYGVVPGSKHYAC-------MVDILGRAGCLEEAVELIEKMPIVPSASVWGAL 540

Query: 231 ILGYGMLGEVDTA 243
           +    + G V+ A
Sbjct: 541 LGACRIYGNVELA 553



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +F+++  +++  W+AM+A  A +     A+ L  +M      PN+VT
Sbjct: 409 MYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVT 468

Query: 61  LTNVLPACARGHFLRPGK 78
            TN+L AC+    +  G+
Sbjct: 469 FTNLLCACSHSGLVDEGR 486


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  303 bits (777), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 160/416 (38%), Positives = 253/416 (60%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YA   +   A  LF  + ++N+  WN ++  +A+      A++L R M  H   P++ T
Sbjct: 106 LYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFT 165

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL ACA    L  G+E+H R+       D+F+   + DMYAKCGC++ A+ VF+ I+
Sbjct: 166 YPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIA 225

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V +N +I  Y Q     E+L+L  +M   G+   + + + A+SA A+ AA+ +G+E
Sbjct: 226 VRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRE 285

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG   R+       +  S++D Y +SG + +A  +F+ L  ++  SWN +I GYGM G 
Sbjct: 286 LHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGH 345

Query: 240 VDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
            D A+ LF  M+ D  V  D ++++ +L+AC+HGG+VE+ K++F  M  A S+KPT  HY
Sbjct: 346 ADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHY 405

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C++D+LG  G  E+A  LIK + +EPD+ IWGALL  C+I+ NVELG  A + L  L+P
Sbjct: 406 TCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEP 465

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +  G Y+ LSN+YA++GKW++A++VR+LM +R  KK   CSW++ + +   F+V D
Sbjct: 466 EDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGD 521



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 104/196 (53%), Gaps = 1/196 (0%)

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T++L +C     LR G+++H R++  GL  D  L+  L D+YA CG +  A+ +F+ +  
Sbjct: 66  TSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPK 125

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+   +N+LI  Y++      ++ L+  M   G++ D  ++   + ACA L  ++ G+E+
Sbjct: 126 RNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREV 185

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H           +FV   ++D Y + G +D A  +FD + V+D+  WN++I  YG  G  
Sbjct: 186 HQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRP 245

Query: 241 DTAINLFEAMREDGVG 256
             A+ L   M  +G+G
Sbjct: 246 MEALALCRDMAANGIG 261



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 1/186 (0%)

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
           RL    H        + +C    +++ G+++HG  +   L     ++  ++D Y   G++
Sbjct: 54  RLASSPHAYHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQV 113

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
             A ++FD +P ++   WN LI  Y   G  + A+ L+  M E GV  D  +Y  +L AC
Sbjct: 114 GHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKAC 173

Query: 270 SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIW 329
           +    +E G++    +            A +VD+  + G ++DA  +   + V  DA +W
Sbjct: 174 AALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVR-DAVVW 232

Query: 330 GALLGA 335
            +++ A
Sbjct: 233 NSMIAA 238


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  303 bits (777), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 153/411 (37%), Positives = 245/411 (59%), Gaps = 3/411 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      +  +F  +  K+ VSWN+M+  + QN    +A++L + M    + P+SVT
Sbjct: 360 MYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVK-PDSVT 418

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
              +L    +   L  GKE+H  + + G N ++ ++N L DMYAKCG +  +  VF N+ 
Sbjct: 419 YVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMK 478

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +++N +I     + DC+  L + S MR  G+  D+ + +  +  C+ LAA +QGKE
Sbjct: 479 ARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE 538

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG   +  L + + V N +++ Y++ G +  + ++F  +  KD  +W  LI   GM GE
Sbjct: 539 IHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGE 598

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+  F  M   G+  D V+++AI+ ACSH GLVE+G  YF  M+ D  ++P   HYA
Sbjct: 599 GKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYA 658

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLL R+ L++ A   I ++P++PD++IWGALL ACR+ G+ E+    +E +  L P 
Sbjct: 659 CVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPD 718

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
             GYY+L+SN+YA  GKWD+   +R+ +K+R  KK+PGCSW++ +++V  F
Sbjct: 719 DTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVF 769



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 127/436 (29%), Positives = 206/436 (47%), Gaps = 59/436 (13%)

Query: 2   YAKSSRPAEASYLFHNIA-EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           YA    P  +  +F   +   N+  WN+++     N L  +AL L  E       P++ T
Sbjct: 58  YAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYT 117

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +V+ ACA        K IH R++  G   DL++ NAL DMY +   L+ A+ VF  + 
Sbjct: 118 FPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMP 177

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N LI GY+     +E+L ++   R LG+  D  +    + AC  L ++++G  
Sbjct: 178 LRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDI 237

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTR-SGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           IHG+  +  +   + V N +L  Y + +G ID   +IFD + ++D+ SWNT+I GY  +G
Sbjct: 238 IHGLIEKIGIKKDVIVNNGLLSMYCKFNGLID-GRRIFDKMVLRDAVSWNTMICGYSQVG 296

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-----QADSVKPT 293
             + +I LF  M  +    D ++  +IL AC H G +E GK   D M     + D+    
Sbjct: 297 LYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASN 355

Query: 294 ---EMHYAC-----------------------MVDLLGRAGLMEDAVKLIKNLP--VEPD 325
               M+  C                       M+++  + G  ++A+KL K +   V+PD
Sbjct: 356 ILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPD 415

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC-----GY--YILLSN----MYAEAG 374
           +  +  LL      G++ LG          K  HC     G+   I++SN    MYA+ G
Sbjct: 416 SVTYVMLLSMSTQLGDLHLG----------KELHCDLAKMGFNSNIVVSNTLVDMYAKCG 465

Query: 375 KWDEASKVRELMKSRE 390
           +  ++ KV E MK+R+
Sbjct: 466 EMGDSLKVFENMKARD 481



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 173/346 (50%), Gaps = 4/346 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY + +   +A  +F  +  +++VSWN++++ +  N    +AL++          P+S T
Sbjct: 159 MYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYT 218

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +++VL AC     +  G  IH  I + G+  D+ + N L  MY K   L   + +F+ + 
Sbjct: 219 MSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMV 278

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N +I GYSQ     ES+ LF EM +   K D+++    + AC +L  ++ GK 
Sbjct: 279 LRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKY 337

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I          +N +++ Y + G +  + ++F  +  KDS SWN++I  Y   G 
Sbjct: 338 VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGS 397

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D A+ LF+ M+ D V  D V+Y+ +L+  +  G +  GK+   ++         +    
Sbjct: 398 FDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNT 456

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
           +VD+  + G M D++K+ +N+    D   W  ++ +C    +  LG
Sbjct: 457 LVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVHSEDCNLG 501



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 173/391 (44%), Gaps = 54/391 (13%)

Query: 46  VREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK 105
           ++ + + +E       +++  A A         ++H+ II  GL+  +  +  L   YA 
Sbjct: 1   MKTLRVLHECSRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAH 60

Query: 106 CGCLNLAQNVFNISFRDEVSY--NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMG 163
                 + +VF ++      Y  N +I   +     SE+LSL+SE + + ++ D  +F  
Sbjct: 61  FRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPS 120

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
            I+ACA L   +  K IH   +     + L++ N+++D Y R   +D A K+F+ +P++D
Sbjct: 121 VINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRD 180

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH----------GG 273
             SWN+LI GY   G  + A+ ++   R  GV  D  +  ++L AC             G
Sbjct: 181 VVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHG 240

Query: 274 LVEK-------------------------GKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
           L+EK                         G++ FD+M    V    + +  M+    + G
Sbjct: 241 LIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKM----VLRDAVSWNTMICGYSQVG 296

Query: 309 LMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI-- 364
           L E+++KL   +    +PD     ++L AC   G++E G +   H +M+     GY    
Sbjct: 297 LYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYV--HDYMITS---GYECDT 351

Query: 365 ----LLSNMYAEAGKWDEASKVRELMKSREA 391
               +L NMYA+ G    + +V   MK +++
Sbjct: 352 TASNILINMYAKCGNLLASQEVFSGMKCKDS 382


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  303 bits (776), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 149/417 (35%), Positives = 252/417 (60%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F  +AE+++ SWN M++ +A+N     A  +   M     F +  T
Sbjct: 205 MYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTT 264

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           L  +L ACA    ++ GK IH   +R  + N++ F TN+L +MY  C C+  A+ +F  +
Sbjct: 265 LLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERV 324

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            ++D VS+N +I+GY++  D  ESL LF  M L G   D V+F+  + AC  +AA++ G 
Sbjct: 325 RWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGM 384

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH   ++K    +  V  +++D Y++ G +  + ++FD +P K   SW+ ++ GYG+ G
Sbjct: 385 SIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHG 444

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               AI++ + M+ + V  D   + +IL+ACSH GLV +GK+ F +M+ + +VKP   HY
Sbjct: 445 RGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHY 504

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +CMVDLLGRAG +++A  +I+ + ++P ++IW ALL A R++ N++L   +A+ +F + P
Sbjct: 505 SCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNP 564

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +    YI LSN+YA   +WD+  +VR +++ +  KK+PGCS+++  + V  F+V D+
Sbjct: 565 KVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDK 621



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/429 (29%), Positives = 212/429 (49%), Gaps = 48/429 (11%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA     ++A  +F  I  KN   WN M+  +A N L +K+L L REM    +  ++ T 
Sbjct: 105 YAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTY 164

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL AC     +  G+ +H+ ++  GL  D+++ N+L  MYAK G +  A+ VF+ ++ 
Sbjct: 165 PFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAE 224

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD  S+N +I GY++ +D   +  +F  M   G+  D  + +G +SACA+L A+K+GK I
Sbjct: 225 RDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVI 284

Query: 181 HGVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           HG  +R  +  +  F  NS+++ Y     +  A ++F+ +  KD+ SWN++ILGY   G+
Sbjct: 285 HGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGD 344

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG---------- 278
              ++ LF  M  DG G D V++IA+L AC            H  LV+KG          
Sbjct: 345 AFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTA 404

Query: 279 --------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---P 321
                         ++ FDEM   S+    + ++ MV   G  G   +A+ ++  +    
Sbjct: 405 LVDMYSKCGSLACSRRVFDEMPDKSL----VSWSAMVAGYGLHGRGREAISILDGMKANS 460

Query: 322 VEPDANIWGALLGACRIYGNVELGA---WAAEHLFMLKPQHCGYYILLSNMYAEAGKWDE 378
           V PD  ++ ++L AC   G V  G    +  E  + +KP    +Y  + ++   AG  DE
Sbjct: 461 VIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPA-LSHYSCMVDLLGRAGHLDE 519

Query: 379 ASKVRELMK 387
           A  +   M+
Sbjct: 520 AYVIIRTME 528



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 189/407 (46%), Gaps = 46/407 (11%)

Query: 26  WNAMVANFAQN---RLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82
           +N+  ++F+Q    ++  ++L + RE P+      S+    +L +       + G+++HA
Sbjct: 25  YNSFTSHFSQGDVAQMVERSLSM-REHPLQQYPLTSLQCGALLQSFTNTKSFKQGQQLHA 83

Query: 83  RIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCS 140
            +I    L  + +L   L   YA CG ++ A+ +F+ I  ++   +N +I GY+      
Sbjct: 84  HMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPM 143

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
           +SL L+ EM   G + D  ++   + AC +L  ++ G+ +H   +   L + ++V NS+L
Sbjct: 144 KSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLL 203

Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
             Y + G +  A  +FD +  +D  SWNT+I GY    +  TA  +F+ M + G+  D  
Sbjct: 204 AMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCT 263

Query: 261 SYIAILTACS-----------HGGLVEKGKKYFDEMQADSVKPTEMHYACMVD------- 302
           + + +L+AC+           HG  V      +++   +S+     +  CMVD       
Sbjct: 264 TLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFER 323

Query: 303 ------------LLG--RAGLMEDAVKLIKNLPVE---PDANIWGALLGACRIYGNVELG 345
                       +LG  R G   ++++L + + ++   PD   + A+LGAC     +  G
Sbjct: 324 VRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYG 383

Query: 346 AWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDEASKVRELMKSR 389
              + H +++K       I+   L +MY++ G    + +V + M  +
Sbjct: 384 --MSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDK 428


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/418 (36%), Positives = 252/418 (60%), Gaps = 5/418 (1%)

Query: 2   YAKSSRPAEASYLFHN-IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y++     +A  +F   I  +++V+WN+M+A +  N  E +A QL  EM +    P+  T
Sbjct: 246 YSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYT 305

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC--GCLNLAQNVF-N 117
            T+V+ A   G     GK +H  +I++GL F + ++N+L  MY K     ++ A N+F +
Sbjct: 306 YTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFES 365

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  +D VS+N ++ G+SQ+    ++L  F  MR   +  D  +F   + +C++LA ++ G
Sbjct: 366 LENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLG 425

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           +++H + ++     + FVA+S++  Y++ G I+ A K FD  P   S +WN+LI GY   
Sbjct: 426 QQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQH 485

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-H 296
           G    A++LF  M++  V  D ++++A+LTACSH GLVE+G  +   M++D   P  M H
Sbjct: 486 GRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEH 545

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YACM+DLLGRAG +++A  LI+ +P EPDA +W  LLGACR  G++EL +  A HL  L+
Sbjct: 546 YACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELE 605

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P+    Y+LLS+M+    +W+E + ++ LMK R  KK PG SW++ ++EV+ F   DR
Sbjct: 606 PEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDR 663



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 204/428 (47%), Gaps = 44/428 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R  +A  +F +I  +N V+WNA+++ +AQ      A  L+  M +     +  T
Sbjct: 144 MYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGT 203

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--I 118
              +L         +   ++HA+I++ GL  D  + NA+   Y++CG +  A+ VF+  I
Sbjct: 204 FAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAI 263

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD V++N ++  Y   +   E+  LF EM++LG + D+ ++   ISA    +   QGK
Sbjct: 264 ETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGK 323

Query: 179 EIHGVTIRKHLHTHLFVANSILDFY--TRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            +HG+ I++ L   + ++NS++  Y  + S  +D A  IF+ L  KD  SWN+++ G+  
Sbjct: 324 SLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQ 383

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G  + A+  FE MR   V  D  ++ A+L +CS    ++ G++    +     +P    
Sbjct: 384 SGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFV 443

Query: 297 YACMVDLLGRAGLMEDAVK----------------------------------LIKNLPV 322
            + ++ +  + G++EDA K                                  L+K+  V
Sbjct: 444 ASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRV 503

Query: 323 EPDANIWGALLGACRIYGNVELGAW----AAEHLFMLKPQHCGYYILLSNMYAEAGKWDE 378
           + D   + A+L AC   G VE G W    + E  + + P+   +Y  + ++   AG+ DE
Sbjct: 504 KLDHITFVAVLTACSHIGLVEEG-WSFLKSMESDYGIPPR-MEHYACMIDLLGRAGRLDE 561

Query: 379 ASKVRELM 386
           A  + E M
Sbjct: 562 AKALIEAM 569



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 195/421 (46%), Gaps = 43/421 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      AS +F   ++++ VSWN M+A F        AL+ ++ M  +    +  + 
Sbjct: 44  YAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSF 103

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            ++L   A   ++  G+++H+ +++ G   ++F  +AL DMYAKC  +  A  VF +I+ 
Sbjct: 104 GSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINI 163

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ V++N LI GY+Q  D   +  L   M L G++ D  +F   ++   +    K   ++
Sbjct: 164 RNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQV 223

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD-CLPVKDSASWNTLILGYGMLGE 239
           H   ++  L +   V N+I+  Y+  G I+ A ++FD  +  +D  +WN+++  Y +  +
Sbjct: 224 HAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQ 283

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQAD 288
            + A  LF  M+  G   D  +Y ++++A             HG ++++G ++   +   
Sbjct: 284 EEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNS 343

Query: 289 SV----------------------KPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---VE 323
            +                          + +  ++    ++GL EDA+K  +N+    V 
Sbjct: 344 LIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVV 403

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN---MYAEAGKWDEAS 380
            D   + A+L +C     ++LG     H+ +LK        + S+   MY++ G  ++A 
Sbjct: 404 IDHYAFSAVLRSCSDLATLQLGQQV--HVLVLKSGFEPNGFVASSLIFMYSKCGVIEDAR 461

Query: 381 K 381
           K
Sbjct: 462 K 462



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 121/267 (45%), Gaps = 23/267 (8%)

Query: 81  HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDC 139
           H   I+ G    ++  N +   YAKCG + +A  +F   S RD VS+N +I G+    + 
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
             +L     M+  G   D  SF   +   A +  ++ G+++H + ++     ++F  +++
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSAL 141

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
           LD Y +  R++ A ++F  + +++S +WN LI GY  +G+  TA  L + M  +GV  D 
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDD 201

Query: 260 VSYIAI-----------LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            ++  +           LT   H  +V+ G      + +D+          ++      G
Sbjct: 202 GTFAPLLTLLDDPDLHKLTTQVHAKIVKHG------LASDTTVCN-----AIITAYSECG 250

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGA 335
            +EDA ++        D   W ++L A
Sbjct: 251 SIEDAERVFDGAIETRDLVTWNSMLAA 277



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 88/179 (49%), Gaps = 1/179 (0%)

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
           ++  A+ +    H + I+      ++ AN+I+  Y + G I +A+K+F     +D+ SWN
Sbjct: 10  SSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWN 69

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           T+I G+  LG  +TA+   ++M+  G   D  S+ +IL   +  G VE G++    M   
Sbjct: 70  TMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKM 129

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAW 347
             +      + ++D+  +   +EDA ++ K++ +  ++  W AL+      G+     W
Sbjct: 130 GYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIR-NSVTWNALISGYAQVGDRGTAFW 187


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 149/417 (35%), Positives = 247/417 (59%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     +A  +F  + ++N+VSW AM++ ++Q     +AL L  EM   +  PN  T
Sbjct: 106 LYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFT 165

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              +L +C        G++IH+  I++     +F+ ++L DMYAK G +  A  VF+ + 
Sbjct: 166 FATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLP 225

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V+   +I GY+Q     E+L LF ++++ GM  + V++   ++A + LAA+  GK+
Sbjct: 226 ERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQ 285

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +R   ++++ + NS++D Y++ G +  A +IFD +P +   SWN +++GY   G 
Sbjct: 286 VHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGM 345

Query: 240 VDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEM--QADSVKPTEMH 296
               + LF+ MRE+  V  D ++Y+A+L+ CSHG L + G + F  M    D ++P   H
Sbjct: 346 AREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGH 405

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y C+VDLLGRAG +E+A   IK +P  P A IWG+LLG+CR++ +VE+G    + L  L+
Sbjct: 406 YGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELE 465

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P++ G Y++LSN+YA AGKW++   +R+LM+ +   K PG SWV+    V  F  +D
Sbjct: 466 PENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASD 522



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 142/272 (52%), Gaps = 2/272 (0%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           ++L  C     +R G+ +H  +I+      ++L   L  +Y KC CL  A+ +F+ +  R
Sbjct: 67  SILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQR 126

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + VS+  +I  YSQ     E+L+LF EM     + +  +F   +++C      + G++IH
Sbjct: 127 NVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIH 186

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
            + I+++  +H+FV +S+LD Y +SGRI  A+ +F CLP +D  +   +I GY  +G  +
Sbjct: 187 SIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDE 246

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            A+ LF  ++ +G+  + V+Y ++LTA S    +  GK+    +         +    ++
Sbjct: 247 EALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLI 306

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           D+  + G +  A ++  ++P E     W A+L
Sbjct: 307 DMYSKCGNVCYARRIFDSMP-ERTCISWNAML 337



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 116/279 (41%), Gaps = 39/279 (13%)

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           +M +LG +     +   ++ C +  AI++G+ +H   I+      +++   ++  Y +  
Sbjct: 52  QMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCD 111

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
            +  A  +FD +P ++  SW  +I  Y   G    A+NLF  M       +  ++  ILT
Sbjct: 112 CLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILT 171

Query: 268 ACSHGGLVEKGKKYFD------------------EMQADSVKPTEMH-----------YA 298
           +C      E G++                     +M A S +  + H            A
Sbjct: 172 SCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVA 231

Query: 299 CMVDLLGRA--GLMEDAVKLIKNLPVE---PDANIWGALLGACRIYGNVELGAWAAEHLF 353
           C   + G A  GL E+A+KL + L +E    ++  + ++L A  + G   L      H  
Sbjct: 232 CTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTA--LSGLAALNHGKQVHSH 289

Query: 354 MLKPQHCGYYILLS---NMYAEAGKWDEASKVRELMKSR 389
           +L+     Y +LL+   +MY++ G    A ++ + M  R
Sbjct: 290 VLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPER 328


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 158/405 (39%), Positives = 241/405 (59%), Gaps = 4/405 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           LF  +  +++VSWN ++A  AQN +  +AL +V+EM   N  P+S TL+++LP       
Sbjct: 155 LFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHAN 214

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRDEVSYNILIVG 132
           +  GKEIH   IR G + D+F+ ++L DMYAKC  + L+   F++ S RD +S+N +I G
Sbjct: 215 VTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAG 274

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
             Q     + L  F  M    +K   VSF   I ACA+L A+  GK++H   IR     +
Sbjct: 275 CVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDN 334

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNTLILGYGMLGEVDTAINLFEAM 250
            F+A+S+LD Y + G I +A  IF+ + +  +D  SW  +I+G  M G    A++LFE M
Sbjct: 335 KFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEM 394

Query: 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGL 309
             DGV    V+++A+LTACSH GLV++G KYF+ MQ D  V P   HYA + DLLGRAG 
Sbjct: 395 LVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGR 454

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNM 369
           +E+A   I N+  EP  ++W  LL ACR + N+EL       + ++ P + G ++++SN+
Sbjct: 455 LEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNI 514

Query: 370 YAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           Y+ A +W +A+K+R  M+    KK P CSW++  ++V  F+  D+
Sbjct: 515 YSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDK 559



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 129/236 (54%), Gaps = 5/236 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK ++   +   FH ++ ++ +SWN+++A   QN    + L   R M      P  V+
Sbjct: 243 MYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVS 302

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
            ++V+PACA    L  GK++HA IIR G + + F+ ++L DMYAKCG + +A+ +FN   
Sbjct: 303 FSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIE 362

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  RD VS+  +I+G +      +++SLF EM + G+K   V+FM  ++AC++   + +G
Sbjct: 363 MCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEG 422

Query: 178 KEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
            +      R   +   L    ++ D   R+GR++ A      +  + + S W+TL+
Sbjct: 423 WKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLL 478



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 183/407 (44%), Gaps = 34/407 (8%)

Query: 19  AEKNIVSWNAMVANFAQN---RLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLR 75
           A  + ++W  ++  +A +   R  L +  L+R   I    P+     ++L A        
Sbjct: 37  ATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGIS---PDRHLFPSLLRASTLFKHFN 93

Query: 76  PGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC----------------------LNLAQ 113
             + +HA +IR G +FDL+  NAL +MY+K                         ++  +
Sbjct: 94  LAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVR 153

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
            +F+ +  RD VS+N +I G +Q     E+L++  EM    ++ D  +    +      A
Sbjct: 154 KLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHA 213

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
            + +GKEIHG  IR      +F+ +S++D Y +  +++L+   F  L  +D+ SWN++I 
Sbjct: 214 NVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIA 273

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
           G    G  D  +  F  M ++ V    VS+ +++ AC+H   +  GK+    +       
Sbjct: 274 GCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDD 333

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPV-EPDANIWGALLGACRIYGNVELGAWAAEH 351
            +   + ++D+  + G ++ A  +   + + + D   W A++  C ++G+        E 
Sbjct: 334 NKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEE 393

Query: 352 LFM--LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPG 396
           + +  +KP +  +  +L+   + AG  DE  K    M+ R+    PG
Sbjct: 394 MLVDGVKPCYVAFMAVLTAC-SHAGLVDEGWKYFNSMQ-RDFGVAPG 438


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 153/411 (37%), Positives = 245/411 (59%), Gaps = 3/411 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      +  +F  +  K+ VSWN+M+  + QN    +A++L + M    + P+SVT
Sbjct: 419 MYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVK-PDSVT 477

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
              +L    +   L  GKE+H  + + G N ++ ++N L DMYAKCG +  +  VF N+ 
Sbjct: 478 YVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMK 537

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +++N +I     + DC+  L + S MR  G+  D+ + +  +  C+ LAA +QGKE
Sbjct: 538 ARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE 597

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG   +  L + + V N +++ Y++ G +  + ++F  +  KD  +W  LI   GM GE
Sbjct: 598 IHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGE 657

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+  F  M   G+  D V+++AI+ ACSH GLVE+G  YF  M+ D  ++P   HYA
Sbjct: 658 GKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYA 717

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLL R+ L++ A   I ++P++PD++IWGALL ACR+ G+ E+    +E +  L P 
Sbjct: 718 CVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPD 777

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
             GYY+L+SN+YA  GKWD+   +R+ +K+R  KK+PGCSW++ +++V  F
Sbjct: 778 DTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVF 828



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 127/436 (29%), Positives = 206/436 (47%), Gaps = 59/436 (13%)

Query: 2   YAKSSRPAEASYLFHNIA-EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           YA    P  +  +F   +   N+  WN+++     N L  +AL L  E       P++ T
Sbjct: 117 YAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYT 176

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +V+ ACA        K IH R++  G   DL++ NAL DMY +   L+ A+ VF  + 
Sbjct: 177 FPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMP 236

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N LI GY+     +E+L ++   R LG+  D  +    + AC  L ++++G  
Sbjct: 237 LRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDI 296

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTR-SGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           IHG+  +  +   + V N +L  Y + +G ID   +IFD + ++D+ SWNT+I GY  +G
Sbjct: 297 IHGLIEKIGIKKDVIVNNGLLSMYCKFNGLID-GRRIFDKMVLRDAVSWNTMICGYSQVG 355

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-----QADSVKPT 293
             + +I LF  M  +    D ++  +IL AC H G +E GK   D M     + D+    
Sbjct: 356 LYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASN 414

Query: 294 ---EMHYAC-----------------------MVDLLGRAGLMEDAVKLIKNLP--VEPD 325
               M+  C                       M+++  + G  ++A+KL K +   V+PD
Sbjct: 415 ILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPD 474

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC-----GY--YILLSN----MYAEAG 374
           +  +  LL      G++ LG          K  HC     G+   I++SN    MYA+ G
Sbjct: 475 SVTYVMLLSMSTQLGDLXLG----------KELHCDLAKMGFNSNIVVSNTLVDMYAKCG 524

Query: 375 KWDEASKVRELMKSRE 390
           +  ++ KV E MK+R+
Sbjct: 525 EMGDSLKVFENMKARD 540



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 173/346 (50%), Gaps = 4/346 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY + +   +A  +F  +  +++VSWN++++ +  N    +AL++          P+S T
Sbjct: 218 MYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYT 277

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +++VL AC     +  G  IH  I + G+  D+ + N L  MY K   L   + +F+ + 
Sbjct: 278 MSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMV 337

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N +I GYSQ     ES+ LF EM +   K D+++    + AC +L  ++ GK 
Sbjct: 338 LRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKY 396

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I          +N +++ Y + G +  + ++F  +  KDS SWN++I  Y   G 
Sbjct: 397 VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGS 456

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D A+ LF+ M+ D V  D V+Y+ +L+  +  G +  GK+   ++         +    
Sbjct: 457 FDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNT 515

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
           +VD+  + G M D++K+ +N+    D   W  ++ +C    +  LG
Sbjct: 516 LVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVHSEDCNLG 560



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 174/393 (44%), Gaps = 54/393 (13%)

Query: 44  QLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMY 103
           ++++ + + +E       +++  A A         ++H+ II  GL+  +  +  L   Y
Sbjct: 58  RVMKTLRVLHECSRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKY 117

Query: 104 AKCGCLNLAQNVFNISFRDEVSY--NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
           A       + +VF ++      Y  N +I   +     SE+LSL+SE + + ++ D  +F
Sbjct: 118 AHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTF 177

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
              I+ACA L   +  K IH   +     + L++ N+++D Y R   +D A K+F+ +P+
Sbjct: 178 PSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPL 237

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK---- 277
           +D  SWN+LI GY   G  + A+ ++   R  GV  D  +  ++L AC   G VE+    
Sbjct: 238 RDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDII 297

Query: 278 -------------------------------GKKYFDEMQADSVKPTEMHYACMVDLLGR 306
                                          G++ FD+M    V    + +  M+    +
Sbjct: 298 HGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKM----VLRDAVSWNTMICGYSQ 353

Query: 307 AGLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364
            GL E+++KL   +    +PD     ++L AC   G++E G +   H +M+     GY  
Sbjct: 354 VGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYV--HDYMITS---GYEC 408

Query: 365 ------LLSNMYAEAGKWDEASKVRELMKSREA 391
                 +L NMYA+ G    + +V   MK +++
Sbjct: 409 DTTASNILINMYAKCGNLLASQEVFSGMKCKDS 441


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 151/417 (36%), Positives = 251/417 (60%), Gaps = 2/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +   I EK++VSW +M+A + Q+    +AL+  +EM     +P+++ 
Sbjct: 389 MYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIG 448

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L + + ACA    +  G +IHAR+   G + D+ + N L  +YA+CG    A + F  I 
Sbjct: 449 LASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIE 508

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ +++N LI G++Q+    E+L +F +M   G K++V +F+ +ISA ANLA IKQGK+
Sbjct: 509 HKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQ 568

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+    +   ++N+++  Y + G I+ A   F  +  ++  SWNT+I      G 
Sbjct: 569 IHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGR 628

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++LF+ M++ G+    V+++ +LTACSH GLVE+G  YF  M  +  + P   HYA
Sbjct: 629 GLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYA 688

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VD+LGRAG ++ A + ++ +P+  D+ +W  LL AC+++ N+E+G +AA+HL  L+P 
Sbjct: 689 CVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPH 748

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
               Y+LLSN YA  GKW    ++R++MK R  +K PG SW++ ++ V  F V DR+
Sbjct: 749 DSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRL 805



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 177/336 (52%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK      A  +F  ++ ++ VSW A+++ +AQN L  +A++L REM      P    
Sbjct: 86  LYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYV 145

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L+++L AC +    + G+ IH ++ ++G   + F+ NAL  +Y +C    LA  VF ++ 
Sbjct: 146 LSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDML 205

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           + D V++N LI G++Q      +L +F EM+L G+  D V+    ++AC+ +  +++GK+
Sbjct: 206 YCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQ 265

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++  +     +  S+LD Y +SG I+ A +IFD     +   WN +++ YG + +
Sbjct: 266 LHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDD 325

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +  + ++F  M   GV  +  +Y  +L  C+H G +  G++       +  +        
Sbjct: 326 LAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGV 385

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++D+  + G ++ A +++ ++  E D   W +++  
Sbjct: 386 LIDMYSKYGWLDKAQRIL-DMIEEKDVVSWTSMIAG 420



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 157/304 (51%), Gaps = 1/304 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F ++   + V++N +++  AQ     +AL +  EM +    P+SVT+ ++L AC+ 
Sbjct: 197 ADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSA 256

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNIL 129
              LR GK++H+ +++ G++ D  +  +L D+Y K G +  A  +F+   R  V  +N++
Sbjct: 257 VGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLM 316

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           +V Y Q  D ++S  +F  M   G++ +  ++   +  C +   I  G++IH +TI+   
Sbjct: 317 LVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGF 376

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            + ++V+  ++D Y++ G +D A +I D +  KD  SW ++I GY        A+  F+ 
Sbjct: 377 QSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKE 436

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M+  G+  D +   + ++AC+    V +G +    +           +  +V L  R G+
Sbjct: 437 MQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGI 496

Query: 310 MEDA 313
            ++A
Sbjct: 497 SKEA 500



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 136/266 (51%), Gaps = 5/266 (1%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTS 137
           EIHA+ I  GL+    + N L D+YAK G +  A+ VF  +S RD VS+  ++ GY+Q  
Sbjct: 63  EIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNG 122

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
              E++ L+ EM   G+          +SAC      + G+ IH    ++   +  FV N
Sbjct: 123 LGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGN 182

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
           +++  Y R     LA+++F  +   DS ++NTLI G+   G  D A+ +F+ M+  G+  
Sbjct: 183 ALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSP 242

Query: 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317
           D V+  ++L ACS  G + KGK+    +    +    +    ++DL  ++G +E+A+++ 
Sbjct: 243 DSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIF 302

Query: 318 KNLPVEPDANIWGALLGACRIYGNVE 343
            +     +  +W  +L A   YG ++
Sbjct: 303 DSGD-RTNVVLWNLMLVA---YGQID 324



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 123/305 (40%), Gaps = 50/305 (16%)

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK-- 178
           R   S+N  + G+    D  + L LF+      M    V F  A+ AC        G+  
Sbjct: 4   RGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRG-----SGRRW 58

Query: 179 ----EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
               EIH   I   L  +  + N ++D Y + G +  A ++F+ L V+D+ SW  ++ GY
Sbjct: 59  PLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGY 118

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK--------------- 279
              G  + A+ L+  M   GV   P    +IL+AC+   L + G+               
Sbjct: 119 AQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSET 178

Query: 280 ----------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP-- 321
                           +  D +  D +    + +  ++    + G  + A+ +   +   
Sbjct: 179 FVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLS 238

Query: 322 -VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWD 377
            + PD+    +LL AC   G++  G     H ++LK      YI+   L ++Y ++G  +
Sbjct: 239 GLSPDSVTIASLLAACSAVGDLRKG--KQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIE 296

Query: 378 EASKV 382
           EA ++
Sbjct: 297 EALQI 301


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/423 (36%), Positives = 251/423 (59%), Gaps = 10/423 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K+    +A  +F  ++ +++V WNAM+  +A+     +AL++ R M +    P+  T+
Sbjct: 155 YLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTI 214

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T +L   A    L  GK +H  +++ G +  + ++NAL DMY KC  +  A  +F  I+ 
Sbjct: 215 TGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINE 274

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D  S+N +I  + Q  D   +L LF +M   G+  D+V+    + AC++LAA+  G+EI
Sbjct: 275 KDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREI 334

Query: 181 HGVTIRKHLHT--------HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           HG  I   L          +L V+N+++D Y + G ++ A KIFD +  KD ASWN +I+
Sbjct: 335 HGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIM 394

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVK 291
           GYGM G    A+ +F  M E     + V+ + +L+AC+H G V  G+ +  +M++   V 
Sbjct: 395 GYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVI 454

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
           PT  HY C++D+LGRAG +EDA ++++ +P++ +  +W ALLGACR++GN EL   AA  
Sbjct: 455 PTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQ 514

Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           +  L+P+HCG Y+L+SN+Y   G+++E  +VR+ MK +  KK PGCSW++ +D V  F  
Sbjct: 515 VLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTPGCSWIELKDGVHVFRT 574

Query: 412 NDR 414
            DR
Sbjct: 575 GDR 577



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 177/350 (50%), Gaps = 14/350 (4%)

Query: 1   MYAKSSRPAEASYLFHN-IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MY+K  +  EA  +F++   E+N+ ++NA+++ F  N L  K  Q  ++M +    P+  
Sbjct: 55  MYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKY 114

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   V+  C     +   K+IH  +++ GL  D+F+ +AL + Y K G +  AQ VF  +
Sbjct: 115 TFPCVVRTCCE---VMEVKKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGEL 171

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           S RD V +N +I GY++     E+L +F  M + G+     +  G +S  A+   +  GK
Sbjct: 172 SIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGK 231

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +HG+ ++    + + V+N+++D Y +   I  A  IF+ +  KD  SWN++I  +   G
Sbjct: 232 TVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCG 291

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
           + D  + LF+ M   G+  D V+   +L ACSH   +  G++    M  + +   + + A
Sbjct: 292 DHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGA 351

Query: 299 --------CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
                    ++D+  + G M +A+K+  ++  + D   W  ++    ++G
Sbjct: 352 VDNLLVSNAVMDMYAKCGSMNNALKIFDSMS-KKDVASWNIMIMGYGMHG 400



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 125/248 (50%), Gaps = 23/248 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  I EK+I SWN++++   Q       L+L  +M      P+ VT
Sbjct: 255 MYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVT 314

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFD--------LFLTNALTDMYAKCGCLNLA 112
           +T VLPAC+    L  G+EIH  +I  GL  D        L ++NA+ DMYAKCG +N A
Sbjct: 315 ITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNA 374

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
             +F+ +S +D  S+NI+I+GY       E+L +FS+M     K + V+ +G +SAC + 
Sbjct: 375 LKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHA 434

Query: 172 AAIKQGK-------EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-D 223
             +  G+          GV      +T       ++D   R+G ++ A +I   +P++ +
Sbjct: 435 GFVSHGRLFLAQMESTFGVIPTIEHYT------CVIDMLGRAGHLEDAYEIVQKMPIQAN 488

Query: 224 SASWNTLI 231
              W  L+
Sbjct: 489 PVVWRALL 496



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 130/271 (47%), Gaps = 6/271 (2%)

Query: 65  LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF--NISFRD 122
           L +CA    L  GK++H+ +I  G +       +L +MY+KCG +  A  VF      R+
Sbjct: 18  LQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERN 77

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
             +YN +I G+      S+    + +MRL G+  D  +F   +  C  +  +K+   IHG
Sbjct: 78  VFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKK---IHG 134

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             ++  L   +FV +++++ Y ++G ++ A K+F  L ++D   WN +I GY  +G +D 
Sbjct: 135 CLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDE 194

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
           A+ +F  M   GV     +   IL+  +  G ++ GK     +              ++D
Sbjct: 195 ALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALID 254

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           + G+   + DA+ +I  +  E D   W +++
Sbjct: 255 MYGKCKHIGDAL-IIFEMINEKDIFSWNSII 284



 Score = 46.2 bits (108), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 83/181 (45%), Gaps = 5/181 (2%)

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
           M ++V   +  + +CA+   + +GK++H + I            S+++ Y++ G++  A 
Sbjct: 7   MLNNVTKCVAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAI 66

Query: 214 KIF-DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
            +F D    ++  ++N +I G+   G        ++ MR +GV  D  ++  ++  C   
Sbjct: 67  LVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCE- 125

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
             V + KK    +    ++      + +V+   + G MEDA K+   L +  D  +W A+
Sbjct: 126 --VMEVKKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIR-DVVLWNAM 182

Query: 333 L 333
           +
Sbjct: 183 I 183


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 153/416 (36%), Positives = 258/416 (62%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+  S     + +F ++ +KN+VSW AM+ ++ +  L  K   L++EM +    P+   
Sbjct: 562 MYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFA 621

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T+ L A A    L+ GK +H   IR G+   L + NAL +MY KC  +  A+ +F+ ++
Sbjct: 622 VTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVT 681

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+N LI GYS+ +  +ES SLFS+M LL  + + V+    + A A+++++++G+E
Sbjct: 682 NKDVISWNTLIGGYSRNNFPNESFSLFSDM-LLQFRPNAVTMTCILPAAASISSLERGRE 740

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +R+      + +N+++D Y + G + +A  +FD L  K+  SW  +I GYGM G 
Sbjct: 741 IHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGF 800

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AI LFE MR  G+  D  S+ AIL AC H GL  +G+++F  MQ +  ++P   HY 
Sbjct: 801 GKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYT 860

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLL R G +++A++ I+++P+EPD++IW +LL  CRI+ NV+L    A+ +F L+P+
Sbjct: 861 CIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPE 920

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + GYY+LL+N+YAEA +W+   K++  +  R  ++N G SW++ R +V  F+ ++R
Sbjct: 921 NTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNR 976



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 201/425 (47%), Gaps = 44/425 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAKS+   +A  +F+ +  ++ +SWN++++  + N L  +A++L   M    +  +SVTL
Sbjct: 462 YAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTL 521

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            +VLPACA+  +   G+ +H   ++ GL  +  L NAL DMY+ C        +F ++  
Sbjct: 522 LSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQ 581

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ VS+  +I  Y +     +   L  EM L G++ DV +   A+ A A   ++KQGK +
Sbjct: 582 KNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSV 641

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG TIR  +   L VAN++++ Y +   ++ A  IFD +  KD  SWNTLI GY      
Sbjct: 642 HGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFP 701

Query: 241 DTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKG--------KKYFDEMQADSV 290
           + + +LF  M    + + P  V+   IL A +    +E+G        ++ F E    S 
Sbjct: 702 NESFSLFSDML---LQFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASN 758

Query: 291 KPTEMHYAC-----------------------MVDLLGRAGLMEDAVKLIKNL---PVEP 324
              +M+  C                       M+   G  G  + A+ L + +    +EP
Sbjct: 759 ALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEP 818

Query: 325 DANIWGALLGACRIYGNVELGAW---AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381
           DA  + A+L AC   G    G     A +  + ++P+   +Y  + ++ +  G   EA +
Sbjct: 819 DAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPK-LKHYTCIVDLLSRTGDLKEALE 877

Query: 382 VRELM 386
             E M
Sbjct: 878 FIESM 882



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 143/283 (50%), Gaps = 12/283 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y++  R  +A+ +F ++  ++ +SWN+M+     N     A+ L  +M       +SVT
Sbjct: 248 VYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVT 307

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF----------DLFLTNALTDMYAKCGCLN 110
           + +VLPACA   +   GK +H   ++ GL +          D  L + L  MY KCG + 
Sbjct: 308 VLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMA 367

Query: 111 LAQNVFN-ISFRDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC 168
            A+ VF+ +S +  V  +N+++ GY++  +  ESLSLF +M  LG+  D  +    +   
Sbjct: 368 SARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCI 427

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
             L+  + G   HG  ++        V N+++ FY +S  I  A  +F+ +P +D+ SWN
Sbjct: 428 TCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWN 487

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271
           ++I G    G    AI LF  M   G   D V+ +++L AC+ 
Sbjct: 488 SVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQ 530



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 163/363 (44%), Gaps = 35/363 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEK--NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           Y K     EA  +F  +  +  ++  W ++++ +A+     +A+ L R+M      P++ 
Sbjct: 146 YLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAH 205

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
            ++ VL   +    L  G+ IH  + + GL     + NAL  +Y++CG +  A  VF+ +
Sbjct: 206 AVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSM 265

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD +S+N +I G         ++ LFS+M   G +   V+ +  + ACA L     GK
Sbjct: 266 HPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGK 325

Query: 179 EIHGVTIRKHLHTHLFVANSILD----------FYTRSGRIDLANKIFDCLPVKDSAS-W 227
            +HG +++  L   L    S +D           Y + G +  A ++FD +  K +   W
Sbjct: 326 AVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVW 385

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT-----ACSHGGLVEKG---K 279
           N ++ GY  +GE + +++LF  M E G+  D  +   +L      +C+  GLV  G   K
Sbjct: 386 NLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVK 445

Query: 280 KYFDEMQADSVKPTEMHYAC--MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
             F    A           C  ++    ++ ++ DAV +   +P + D   W +++  C 
Sbjct: 446 LGFGAQCA----------VCNALISFYAKSNMIGDAVLVFNRMPRQ-DTISWNSVISGCS 494

Query: 338 IYG 340
             G
Sbjct: 495 SNG 497



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 129/267 (48%), Gaps = 23/267 (8%)

Query: 95  LTNALTDMYAKCGCLNLAQNVFN---ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL 151
           L   L   Y KCG L  A+ VF+       D   +  L+  Y++  D  E++SLF +M+ 
Sbjct: 138 LGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQC 197

Query: 152 LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211
            G+  D  +    +   ++L ++ +G+ IHG+  +  L     VAN+++  Y+R GR++ 
Sbjct: 198 CGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMED 257

Query: 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS- 270
           A ++FD +  +D+ SWN++I G    G   TA++LF  M   G     V+ +++L AC+ 
Sbjct: 258 AARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAG 317

Query: 271 ----------HGGLVEKGKKY-FDEMQA---DSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
                     HG  V+ G  +  D +Q+   D+   ++     +V +  + G M  A ++
Sbjct: 318 LGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSK-----LVFMYVKCGDMASARRV 372

Query: 317 IKNLPVEPDANIWGALLGACRIYGNVE 343
              +  + + ++W  ++G     G  E
Sbjct: 373 FDAMSSKGNVHVWNLIMGGYAKVGEFE 399


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 166/454 (36%), Positives = 253/454 (55%), Gaps = 40/454 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K    A A   F ++  +NIVSWN+++  + QN    KAL++   M      P+ +T
Sbjct: 195 MYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEIT 254

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVF--- 116
           L +V  ACA    +R G +IHAR+++      DL L NAL DMYAKC  +N A+ VF   
Sbjct: 255 LASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRM 314

Query: 117 -----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
                                        N+  R+ VS+N LI GY+Q  +  E++ LF 
Sbjct: 315 PLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFL 374

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH------GVTIRKHLHTHLFVANSILD 201
            ++   +     +F   ++ACANLA +K G++ H      G   +    + +FV NS++D
Sbjct: 375 LLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLID 434

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y + G ++    +F+ +  +D+ SWN +I+GY   G    A+ +F  M   G   D V+
Sbjct: 435 MYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVT 494

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
            I +L+ACSH GLVE+G+ YF  M  +  + P + HY CMVDLLGRAG +++A  LI+ +
Sbjct: 495 MIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTM 554

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
           P+EPDA +WG+LL AC+++GN+ LG + AE L  + P + G Y+LLSNMYAE G+W +  
Sbjct: 555 PMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVV 614

Query: 381 KVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +VR+ M+     K PGCSW+  +  +  F+V D+
Sbjct: 615 RVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDK 648



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 186/390 (47%), Gaps = 45/390 (11%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EA  LF  + E++  SWNAMV+ FAQ     +AL+ V +M   +   N  +  + L ACA
Sbjct: 103 EALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACA 162

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNI 128
               L  G +IH  I +   + D+++ +AL DMY+KC  +  AQ  F ++  R+ VS+N 
Sbjct: 163 GLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNS 222

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           LI  Y Q     ++L +F  M   G++ D ++     SACA+L+AI++G +IH   ++  
Sbjct: 223 LITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHD 282

Query: 189 LHTH-LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            + + L + N+++D Y +  R++ A  +FD +P++D  S  +++ GY     V  A  +F
Sbjct: 283 KYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMF 342

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
             M E  V    VS+ A++   +  G  E+  + F  ++ +S+ PT  HY          
Sbjct: 343 SNMMERNV----VSWNALIAGYTQNGENEEAVRLFLLLKRESIWPT--HYT--------- 387

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL----FMLKPQHCGYY 363
                                +G LL AC    +++LG  A  H+    F  K       
Sbjct: 388 ---------------------FGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDI 426

Query: 364 IL---LSNMYAEAGKWDEASKVRELMKSRE 390
            +   L +MY + G  ++   V E M  R+
Sbjct: 427 FVGNSLIDMYMKCGLVEDGRLVFERMLERD 456



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 141/311 (45%), Gaps = 33/311 (10%)

Query: 45  LVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104
           LVR++     F +S     +L  C +   +   + +HARII+   + ++F+ N L D+Y 
Sbjct: 6   LVRKVVGDLSFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYG 65

Query: 105 KCGCLNLAQNVFN--------------------------------ISFRDEVSYNILIVG 132
           KCG L  A+ VF+                                +  RD+ S+N ++ G
Sbjct: 66  KCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSG 125

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           ++Q     E+L    +M       +  SF  A+SACA L  +  G +IHG+  +      
Sbjct: 126 FAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLD 185

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +++ ++++D Y++   +  A + FD + V++  SWN+LI  Y   G    A+ +F  M  
Sbjct: 186 VYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMN 245

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDE-MQADSVKPTEMHYACMVDLLGRAGLME 311
            G+  D ++  ++ +AC+    + +G +     M+ D  +   +    +VD+  +   + 
Sbjct: 246 CGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVN 305

Query: 312 DAVKLIKNLPV 322
           +A  +   +P+
Sbjct: 306 EARLVFDRMPL 316


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 153/418 (36%), Positives = 246/418 (58%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAEASYLFHN--IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY K S    A  +F     + K  V +NA+V+ +  N    +A+ L R+M       NS
Sbjct: 93  MYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNS 152

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           VTL  ++PAC     L  G  +H   ++ G + D+ + N    MY KCG +N AQ +F+ 
Sbjct: 153 VTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDE 212

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  +  +S+N ++ GY+Q    +  L L+  M + G+  D V+ +G +S+CANL A   G
Sbjct: 213 MPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVG 272

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            E+          ++ F+ N++++ Y R G +  A  +FD +P +   SW  +I GYGM 
Sbjct: 273 HEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMH 332

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G  + A+ LF+ M   G+  D  +++ +L+ACSH GL ++G +YF  M+ +  ++P   H
Sbjct: 333 GHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEH 392

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y+CMVDLLGRAG +++A  LI+++P++PD  +WGALLGAC+I+ NVEL   A E +  L+
Sbjct: 393 YSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELE 452

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P++ GYY+LLSN+Y+ A       ++R +MK ++ KK+PGCS+V+ +  V  F+V DR
Sbjct: 453 PENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDR 510



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 180/376 (47%), Gaps = 8/376 (2%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           WN  +   A+    L+AL L  +M  H + PN+ T    L +CA       G + H +I 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDE---VSYNILIVGYSQTSDCSES 142
           + G  F+ F+   L  MY K   ++ A+ VF  +F      V YN L+ GY   S CSE+
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
           + LF +M   G+  + V+ +G I AC +   ++ G  +H  T++    + + V N  +  
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM 196

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y + G ++ A K+FD +PVK   SWN ++ GY   G     + L+  M  +GV  DPV+ 
Sbjct: 197 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTL 256

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
           + +L++C++ G    G +   ++QA            ++++  R G +  A  +   +P 
Sbjct: 257 VGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMP- 315

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFM--LKPQHCGYYILLSNMYAEAGKWDEAS 380
           E     W A++G   ++G+ E+     + +    ++P    +  +LS   + AG  D+  
Sbjct: 316 ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSAC-SHAGLTDQGL 374

Query: 381 KVRELMKSREAKKNPG 396
           +  ++MK R  +  PG
Sbjct: 375 EYFKMMK-RNYQLEPG 389


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 157/425 (36%), Positives = 254/425 (59%), Gaps = 17/425 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A  +F  I E+++VSWNAM+  + +N    +AL+L +EM   N  P+  TL
Sbjct: 159 YASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTL 218

Query: 62  TNVLPACARGHFLRPGKEIHARII-RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +VL ACA+   +  G+EIH  +    G    L + NA   +Y+KCG + +A  +F  +S
Sbjct: 219 VSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLS 278

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+N LI GY+  +   E+L LF EM   G   + V+ +  + ACA+L AI  G+ 
Sbjct: 279 CKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRW 338

Query: 180 IH--------GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
           IH        GVT    L T      S++D Y + G I+ A+++F+ +  K  +SWN +I
Sbjct: 339 IHVYIDKRLKGVTNGSALRT------SLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMI 392

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SV 290
            G+ M G  + A +LF  MR++G+  D ++ + +L+ACSH GL++ G+  F  +  D ++
Sbjct: 393 FGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNI 452

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
            P   HY CM+DLLG AGL ++A ++I  +P+EPD  IW +LL AC+++GN+EL    A+
Sbjct: 453 TPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQ 512

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
            L  ++P++ G Y+LLSN+YA AG+W++ +++RE++  +  KK PGCS ++    V +F+
Sbjct: 513 KLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFI 572

Query: 411 VNDRM 415
           + D++
Sbjct: 573 IGDKL 577



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 175/366 (47%), Gaps = 38/366 (10%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F    E N++ WN M+   A +   +  L++   M      PN+ T   +L +CA+
Sbjct: 36  AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAK 95

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN------------- 117
                 G++IHA++++ G   D +   +L  MYA+ G L  A+ VF+             
Sbjct: 96  SKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTAL 155

Query: 118 -------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
                              I+ RD VS+N +I GY +     E+L LF EM    ++ D 
Sbjct: 156 ITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDE 215

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFD 217
            + +  +SACA   +I+ G+EIH +    H   + L + N+ +  Y++ G +++A+ +F+
Sbjct: 216 GTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFE 275

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            L  KD  SWNTLI GY  +     A+ LF+ M   G   + V+ +++L AC+H G ++ 
Sbjct: 276 GLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDI 335

Query: 278 GK---KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
           G+    Y D+        + +  + ++D+  + G +E A ++  ++ +    + W A++ 
Sbjct: 336 GRWIHVYIDKRLKGVTNGSALRTS-LIDMYAKCGDIEAAHQVFNSM-MHKSLSSWNAMIF 393

Query: 335 ACRIYG 340
              ++G
Sbjct: 394 GFAMHG 399



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 131/257 (50%), Gaps = 5/257 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K      AS LF  ++ K++VSWN ++  +    L  +AL L +EM    E PN VT
Sbjct: 260 LYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 319

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR--KGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
           + +VLPACA    +  G+ IH  I +  KG+     L  +L DMYAKCG +  A  VFN 
Sbjct: 320 MLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNS 379

Query: 119 SFRDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
                + S+N +I G++     + +  LFS MR  G++ D ++ +G +SAC++   +  G
Sbjct: 380 MMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLG 439

Query: 178 KEI-HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYG 235
           + I   VT   ++   L     ++D    +G    A +I   +P++ D   W +L+    
Sbjct: 440 RHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACK 499

Query: 236 MLGEVDTAINLFEAMRE 252
           M G ++ A +  + + E
Sbjct: 500 MHGNLELAESFAQKLME 516



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 109/235 (46%), Gaps = 8/235 (3%)

Query: 81  HARIIRKGL---NFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVGYSQT 136
           HA++++ GL   N+ L     L  +      L  A +VF      + + +N ++ G + +
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
           SD    L ++  M   G   +  +F   + +CA     ++G++IH   ++       +  
Sbjct: 62  SDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAH 121

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
            S++  Y R+GR++ A K+FD    +D  S   LI GY   G+V +A  +F+ + E    
Sbjct: 122 TSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITER--- 178

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
            D VS+ A++T        E+  + F EM   +V+P E     ++    ++G +E
Sbjct: 179 -DVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIE 232


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/450 (36%), Positives = 252/450 (56%), Gaps = 39/450 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +      A  +F  +  K  V WNAM++ +  + + ++A +L R M +     +  T 
Sbjct: 238 YVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTF 297

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNF----DLFLTNALTDMYAKCGCLNLAQNVF- 116
           T+VL ACA       GK +H +IIR   NF     L + NAL   Y+KCG + +A+ +F 
Sbjct: 298 TSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFD 357

Query: 117 NISFRDEVSYNILIVGYSQTSDC--------------------------------SESLS 144
           N++ +D VS+N ++ GY ++S C                                 ++L 
Sbjct: 358 NMTLKDVVSWNTILSGYVESS-CLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALK 416

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
           LF++MR   +K    ++ GAI+AC  L A+K GK++HG  ++          N+++  Y 
Sbjct: 417 LFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYA 476

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           R G +  A+ +F  +P  DS SWN +I   G  G    A+ LF+ M  +G+  D +S++ 
Sbjct: 477 RCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLT 536

Query: 265 ILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
           +LTAC+H GLV++G +YF+ M+ D  + P E HY  ++DLLGRAG + +A  LIK +P E
Sbjct: 537 VLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFE 596

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVR 383
           P  +IW A+L  CR  G++ELGA AA+ LF + PQH G YILLSN Y+ AG W +A++VR
Sbjct: 597 PTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVR 656

Query: 384 ELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +LM+ R  KK PGCSW++  ++V  F+V D
Sbjct: 657 KLMRDRGVKKEPGCSWIEAGNKVHVFLVGD 686



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 166/361 (45%), Gaps = 52/361 (14%)

Query: 2   YAKSSRPAEASYLFHNI--AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNS 58
           YA + R   A   F  +  A ++ V  NA+++ +A+      A+ + R +       P+ 
Sbjct: 98  YAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDD 157

Query: 59  VTLTNVLPACARGHF----LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC-------- 106
            + T +L   A GH     +R   ++H  +++ G    L + NAL  +Y KC        
Sbjct: 158 YSFTALL--SAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRD 215

Query: 107 --------------------------GCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDC 139
                                     G +  A++VF  +  + +V +N +I GY  +   
Sbjct: 216 ARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMA 275

Query: 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH----THLFV 195
            E+  LF  M L  +  D  +F   +SACAN+     GK +HG  IR   +      L V
Sbjct: 276 VEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPV 335

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            N+++ FY++ G I +A +IFD + +KD  SWNT++ GY     +D A+ +FE M     
Sbjct: 336 NNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYK-- 393

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
             + +S++ +++   HGG  E   K F++M++++VKP +  YA  +   G  G ++   +
Sbjct: 394 --NELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQ 451

Query: 316 L 316
           L
Sbjct: 452 L 452



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 146/341 (42%), Gaps = 33/341 (9%)

Query: 97  NALTDMYAKCGCLNLAQNVFNI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
            +L   YA    L  A + F+    + RD V +N +I  Y++ S  + ++++F  +   G
Sbjct: 92  TSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 154 -MKHDVVSFMGAISACANLA--AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210
            ++ D  SF   +SA  +L   +++   ++H   ++      L V N+++  Y +    +
Sbjct: 152 SLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPE 211

Query: 211 L---ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
               A K+ D +P KD  +W T+++GY   G+V  A ++FE +  DG  +D V + A+++
Sbjct: 212 ATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEV--DG-KFD-VVWNAMIS 267

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA-------VKLIKNL 320
              H G+  +  + F  M  + V   E  +  ++      GL           ++L  N 
Sbjct: 268 GYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNF 327

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLF--MLKPQHCGYYILLSNMYAEAGKWDE 378
             E    +  AL+      GN+ +    A  +F  M       +  +LS  Y E+   D+
Sbjct: 328 VPEAALPVNNALVTFYSKCGNIAV----ARRIFDNMTLKDVVSWNTILSG-YVESSCLDK 382

Query: 379 ASKVRELMKSREAKKNPGCSW-VQTRDEVQDFVVNDRMKTF 418
           A +V E M  +        SW V     V      D +K F
Sbjct: 383 AVEVFEEMPYKNE-----LSWMVMVSGYVHGGFAEDALKLF 418



 Score = 42.7 bits (99), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+     EA  +F  +   + VSWNAM++   Q+    +AL+L   M     +P+ ++
Sbjct: 474 MYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRIS 533

Query: 61  LTNVLPAC 68
              VL AC
Sbjct: 534 FLTVLTAC 541


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/405 (38%), Positives = 245/405 (60%), Gaps = 4/405 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACARGH 72
           +F  +  +++VSWN ++A FAQN + ++AL +VREM  + +  P+S TL+++LP  A   
Sbjct: 182 VFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHV 241

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIV 131
            +  GKEIH   +R G + D+F+ ++L DMYAKC  L  +   F I  R D +S+N +I 
Sbjct: 242 DVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIA 301

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           G  Q  +    L  F  M    +K   VSF   I ACA+L A+  G+++HG  +R     
Sbjct: 302 GCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDD 361

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
           + F+A+S++D Y + G I +A  +FD +  +D  +W  +I+G  M G    A++LFE M 
Sbjct: 362 NEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENML 421

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLM 310
           EDGV    V+++A+LTACSH GLV++G +YF+ M+ D  + P   HYA + DLLGRAG +
Sbjct: 422 EDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRL 481

Query: 311 EDAVKLIKNLP-VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNM 369
           E+A   I N+  V+P  ++W  LL ACR + +VEL     + L  +  ++ G Y+L+SN+
Sbjct: 482 EEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNI 541

Query: 370 YAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           Y+ A +W +A+++R  M+ +  KK P CSW++  ++V  F+  D+
Sbjct: 542 YSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDK 586



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 156/334 (46%), Gaps = 18/334 (5%)

Query: 25  SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARI 84
           +W++++  +  + L   +      M   +  PN     ++L A       +    +HA  
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 85  IRKGLNFDLFLTNALTDMYAKC---------------GCLNLAQNVFN-ISFRDEVSYNI 128
           +R GL+ DL++ NAL + YAK                  ++  + VF+ +  RD VS+N 
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
           +I G++Q     E+L +  EM   G +K D  +    +   A    + +GKEIHG  +R 
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN 256

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                +F+ +S++D Y +  R++ + + F  LP KD+ SWN++I G    GE D  +  F
Sbjct: 257 GFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFF 316

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
             M ++ V    VS+ +++ AC+H   +  G++    +        E   + +VD+  + 
Sbjct: 317 RRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKC 376

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           G ++ A  +   +  + D   W A++  C ++G+
Sbjct: 377 GNIKMARYVFDRID-KRDMVAWTAIIMGCAMHGH 409



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 104/178 (58%), Gaps = 1/178 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK +R   +   F+ +  K+ +SWN+++A   QN    + L   R M   N  P +V+
Sbjct: 271 MYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVS 330

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++V+PACA    L  G+++H  I+R G + + F+ ++L DMYAKCG + +A+ VF+ I 
Sbjct: 331 FSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRID 390

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
            RD V++  +I+G +      +++SLF  M   G++   V+FM  ++AC++   + +G
Sbjct: 391 KRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEG 448



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 17/237 (7%)

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           +++ +I  Y+  S    S S F+ MR L +  +   F   + A   L   K    +H  T
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 185 IRKHLHTHLFVANSILDFYTR---SGR------------IDLANKIFDCLPVKDSASWNT 229
           +R  L + L++AN++++ Y +   +G+            ID   K+FD +PV+D  SWNT
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 230 LILGYGMLGEVDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           +I G+   G    A+++   M ++G +  D  +  +IL   +    V KGK+       +
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN 256

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
                    + ++D+  +   +E +++    LP   DA  W +++  C   G  + G
Sbjct: 257 GFDGDVFIGSSLIDMYAKCNRLECSLRAFYILP-RKDAISWNSIIAGCVQNGEFDRG 312


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 150/419 (35%), Positives = 262/419 (62%), Gaps = 5/419 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YA+     +   +F  +  ++++SWN+++  +  N   L+A+ L +EM +    P+ +T
Sbjct: 291 LYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLT 350

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           L ++    ++   +R  + +    +RKG    D+ + NA+  MYAK G ++ A+ VFN +
Sbjct: 351 LISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL 410

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAIKQ 176
             +D +S+N +I GY+Q    SE++ +++ M   G  +  +  +++  + AC+   A++Q
Sbjct: 411 PNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQ 470

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G ++HG  ++  L+  +FV  S+ D Y + GR+D A  +F  +P  +S  WNTLI  +G 
Sbjct: 471 GMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGF 530

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G  + A+ LF+ M ++GV  D ++++ +L+ACSH GLV++G+  F+ MQ D  + P+  
Sbjct: 531 HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLK 590

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY CMVDL GRAG +E A+  IK++P++PDA+IWGALL ACR++GNV+LG  A+EHLF +
Sbjct: 591 HYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEV 650

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +P+H GY++LLSNMYA AGKW+   ++R +   +  +K PG S ++  ++V+ F   ++
Sbjct: 651 EPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQ 709



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 140/275 (50%), Gaps = 9/275 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +Y      A A Y F +I  +++ +WN M++ + +     + ++      + +   P+  
Sbjct: 95  LYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYR 154

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T  +VL AC     +  G +IH   ++ G  +D+++  +L  +Y + G +  A+ +F+ +
Sbjct: 155 TFPSVLKACRN---VTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEM 211

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD  S+N +I GY Q+ +  E+L+L   +R +    D V+ +  +SAC       +G 
Sbjct: 212 PTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAM----DSVTVVSLLSACTEAGDFNRGV 267

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH  +I+  L + LFV+N ++D Y   G +    K+FD + V+D  SWN++I  Y +  
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNE 327

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
           +   AI LF+ MR   +  D ++ I++ +  S  G
Sbjct: 328 QPLRAILLFQEMRLSRIQPDCLTLISLASILSQLG 362



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 27/168 (16%)

Query: 187 KHLHTHLFVANSI---------LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K LH  L V+N+I         ++ Y   G + LA   FD +  +D  +WN +I GYG  
Sbjct: 71  KCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRA 130

Query: 238 GEVDTAINLFEA-MREDGVGYDPVSYIAILTACSHGGLVEKGKKY------FDEMQADSV 290
           G     I  F   M   G+  D  ++ ++L AC +   V  G K       F  M    V
Sbjct: 131 GYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRN---VTDGNKIHCLALKFGFMWDVYV 187

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL-GACR 337
             + +H  C      R G + +A  L   +P   D   W A++ G C+
Sbjct: 188 AASLIHLYC------RYGAVVNARILFDEMPTR-DMGSWNAMISGYCQ 228


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 161/416 (38%), Positives = 258/416 (62%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +Y KS   AEA   F  + + +++ W+ M++ +AQ+    +AL+L   M   +   PN+ 
Sbjct: 249 LYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNF 308

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           T  +VL ACA    L  G +IH+ +++ GL+ ++F++NAL D+YAKCG +  +  +F  S
Sbjct: 309 TFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGS 368

Query: 120 F-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             ++EV++N +IVGY Q  D  ++L+LFS M  L ++   V++   + A A+L A++ G+
Sbjct: 369 TEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGR 428

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH +TI+   +    VANS++D Y + GRID A   FD +  +D  SWN LI GY + G
Sbjct: 429 QIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHG 488

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A+NLF+ M++     + ++++ +L+ACS+ GL++KG+ +F  M  D  ++P   HY
Sbjct: 489 LGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHY 548

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMV LLGR+G  ++AVKLI  +P +P   +W ALLGAC I+ N++LG   A+ +  ++P
Sbjct: 549 TCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEP 608

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           Q    ++LLSNMYA A +WD  + VR+ MK ++ KK PG SWV+ +  V  F V D
Sbjct: 609 QDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGD 664



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 160/338 (47%), Gaps = 8/338 (2%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +AS LF  +   N VS+  +   F+++    +A +L+  +       N    T +L    
Sbjct: 56  DASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLV 115

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
                     +HA + + G   D F+  AL D Y+ CG ++ A+ VF+ I F+D VS+  
Sbjct: 116 SMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTG 175

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           ++  Y++     +SL LF +MR++G + +  +   A+ +C  L A K GK +HG  ++  
Sbjct: 176 MVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVC 235

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
               L+V  ++L+ YT+SG I  A + F+ +P  D   W+ +I  Y    +   A+ LF 
Sbjct: 236 YDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFC 295

Query: 249 AMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
            MR+  V   +  ++ ++L AC+   L+  G +    +    +         ++D+  + 
Sbjct: 296 RMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKC 355

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
           G +E++VKL      E +   W  +     I G V+LG
Sbjct: 356 GEIENSVKLFTG-STEKNEVAWNTI-----IVGYVQLG 387



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 130/320 (40%), Gaps = 44/320 (13%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           +S +  N+L    R      GK +H  I++ G + DLF  N L + Y   G L  A  +F
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           + +   + VS+  L  G+S++     +  L   +   G + +   F   +    ++    
Sbjct: 62  DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLAD 121

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
               +H    +       FV  +++D Y+  G +D A ++FD +  KD  SW  ++  Y 
Sbjct: 122 TCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYA 181

Query: 236 MLGEVDTAINLFEAMREDG---------------------------------VGYDPVSY 262
                + ++ LF  MR  G                                 V YD   Y
Sbjct: 182 ENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLY 241

Query: 263 --IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI--- 317
             IA+L   +  G + + +++F+EM  D + P    ++ M+    ++   ++A++L    
Sbjct: 242 VGIALLELYTKSGEIAEAQQFFEEMPKDDLIP----WSLMISRYAQSDKSKEALELFCRM 297

Query: 318 -KNLPVEPDANIWGALLGAC 336
            ++  V P+   + ++L AC
Sbjct: 298 RQSSVVVPNNFTFASVLQAC 317


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 156/423 (36%), Positives = 252/423 (59%), Gaps = 16/423 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A  +F  I  K++VSWNA ++ +A+     +AL+L ++M   N  P+  T+
Sbjct: 179 YASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTM 238

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL ACA+   +  G+++H+ I   G   +L + NAL D+Y+KCG L  A  +F  +S 
Sbjct: 239 VTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSN 298

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D +S+N LI GY+  +   E+L LF +M   G K + V+ +  +SACA+L AI  G+ I
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWI 358

Query: 181 H--------GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           H        GVT    L T      S++D Y + G I+ A ++FD +  +  +SWN +I 
Sbjct: 359 HVYIDKRLKGVTNASSLRT------SLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIF 412

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVK 291
           G+ M G  + A ++F  MR++G+  D ++++ +L+ACSH G+++ G+  F  M  D  + 
Sbjct: 413 GFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLM 472

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
           P   HY CM+DL G +GL ++A K+I  + +EPD  IW +LL AC+++GNVELG   A++
Sbjct: 473 PKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQN 532

Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           L  ++P++ G Y+LLSN+YA A +W+E +K R L+  +  KK PGCS ++    V +F++
Sbjct: 533 LIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFII 592

Query: 412 NDR 414
            D+
Sbjct: 593 GDK 595



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 202/447 (45%), Gaps = 76/447 (17%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  I E  ++ WN M    A +   + AL+L   M      PNS T   +L +CA+   
Sbjct: 59  VFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXA 118

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
            + G+++H ++++ G + DL++  +L  MY + G L  AQ V +                
Sbjct: 119 FKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITG 178

Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
                           I  +D VS+N  I GY++T +  E+L LF +M    ++ D  + 
Sbjct: 179 YASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTM 238

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           +  +SACA   +I+ G+++H          +L + N+++D Y++ G ++ A  +F  L  
Sbjct: 239 VTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSN 298

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-- 279
           KD  SWNTLI GY  +     A+ LF+ M   G   + V+ ++IL+AC+H G ++ G+  
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWI 358

Query: 280 -KYFDE-----MQADSVKPT--EMHYAC------------MVD--------------LLG 305
             Y D+       A S++ +  +M+  C            M++              + G
Sbjct: 359 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHG 418

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG-----AWAAEHLFMLKPQHC 360
           RA    D    ++   +EPD   +  LL AC   G ++LG     +   ++  M K +H 
Sbjct: 419 RANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHY 478

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMK 387
           G  I   ++   +G + EA K+   M+
Sbjct: 479 GCMI---DLXGHSGLFKEAEKMINTME 502



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 125/246 (50%), Gaps = 5/246 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K      A  LF  ++ K+++SWN ++  +    L  +AL L ++M    E PN VT
Sbjct: 279 LYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVT 338

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR--KGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
           + ++L ACA    +  G+ IH  I +  KG+     L  +L DMYAKCG +  AQ VF+ 
Sbjct: 339 MLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDS 398

Query: 119 SF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              R   S+N +I G++     + +  +FS MR  G++ D ++F+G +SAC++   +  G
Sbjct: 399 MLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLG 458

Query: 178 KEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYG 235
           + I     R + L   L     ++D    SG    A K+ + + ++ D   W +L+    
Sbjct: 459 RHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACK 518

Query: 236 MLGEVD 241
           M G V+
Sbjct: 519 MHGNVE 524



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 42/300 (14%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC------GCLNLAQNVFN-ISFRDEVSY 126
           L+  + IHA++I+ GL+   +   AL+ +   C        L  A +VF+ I     + +
Sbjct: 15  LQSLRIIHAQMIKTGLHNTNY---ALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIW 71

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           N +  G++ +SD   +L L+  M  LG+  +  +F   + +CA   A K+G+++HG  ++
Sbjct: 72  NTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLK 131

Query: 187 KHLHTHLFVANSILDFYTRSGR-------------------------------IDLANKI 215
                 L++  S++  Y ++GR                               I+ A+K+
Sbjct: 132 FGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKM 191

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275
           FD +PVKD  SWN  I GY   G    A+ LF+ M +  V  D  + + +L+AC+  G +
Sbjct: 192 FDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSI 251

Query: 276 EKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           E G++    +              ++DL  + G +E A  L + L    D   W  L+G 
Sbjct: 252 ELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLS-NKDVISWNTLIGG 310


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/428 (36%), Positives = 256/428 (59%), Gaps = 15/428 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPNSV 59
           MY    +      +F  + ++ I  WNAM+A ++QN  + +AL L   M        NS 
Sbjct: 260 MYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANST 319

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T+  V+PAC R       + IH  ++++GL+ D F+ N L DMY++ G +++A  +F  +
Sbjct: 320 TMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 379

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-----------GMKHDVVSFMGAISA 167
             RD V++N +I GY  +    ++L L  +M+ L            +K + ++ M  + +
Sbjct: 380 EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPS 439

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           CA L+A+ +GKEIH   I+ +L T + V ++++D Y + G + ++ K+FD +P K+  +W
Sbjct: 440 CAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITW 499

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           N +I+ YGM G    AI+L   M   GV  + V++I++  ACSH G+V++G + F  M+ 
Sbjct: 500 NVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKP 559

Query: 288 D-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVELG 345
           D  V+P+  HYAC+VDLLGRAG +++A +L+  +P + + A  W +LLGA RI+ N+E+G
Sbjct: 560 DYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIG 619

Query: 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDE 405
             AA++L  L+P    +Y+LL+N+Y+ AG WD+A++VR  MK +  +K PGCSW++  DE
Sbjct: 620 EIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDE 679

Query: 406 VQDFVVND 413
           V  FV  D
Sbjct: 680 VHKFVAGD 687



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 205/406 (50%), Gaps = 24/406 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  + A +  L  +   +++V+WN ++++  QN   L+AL+ +REM +    P+  T
Sbjct: 158 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 217

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           +++VLPAC+    LR GKE+HA  ++ G L+ + F+ +AL DMY  C  +   + VF+  
Sbjct: 218 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM 277

Query: 120 FRDEVS-YNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQG 177
           F  ++  +N +I GYSQ     E+L LF  M    G+  +  +  G + AC    A  + 
Sbjct: 278 FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK 337

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + IHG  +++ L    FV N+++D Y+R G+ID+A +IF  +  +D  +WNT+I GY   
Sbjct: 338 EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 397

Query: 238 GEVDTAINLFEAMRE---------DGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQ 286
              + A+ L   M+            V   P  ++ + IL +C+    + KGK+      
Sbjct: 398 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 457

Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGA 346
            +++       + +VD+  + G ++ + K+   +P + +   W  ++ A  ++GN   G 
Sbjct: 458 KNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN---GQ 513

Query: 347 WAAEHLFML-----KPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
            A + L M+     KP    +  + +   + +G  DE  ++  +MK
Sbjct: 514 EAIDLLRMMMVQGVKPNEVTFISVFAAC-SHSGMVDEGLRIFYVMK 558



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 157/340 (46%), Gaps = 10/340 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K         +F  I+E+N VSWN+++++         AL+  R M   N  P+S T
Sbjct: 55  LYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFT 114

Query: 61  LTNVLPACAR---GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           L +V+ AC+       L  GK++HA  +RKG   + F+ N L  MY K G L  +  V  
Sbjct: 115 LVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKL-ASSKVLL 172

Query: 118 ISF--RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
            SF  RD V++N ++    Q     E+L    EM L G++ D  +    + AC++L  ++
Sbjct: 173 GSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLR 232

Query: 176 QGKEIHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
            GKE+H   ++   L  + FV ++++D Y    ++    ++FD +  +    WN +I GY
Sbjct: 233 TGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGY 292

Query: 235 GMLGEVDTAINLFEAMRED-GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
                   A+ LF  M E  G+  +  +   ++ AC   G   + +     +    +   
Sbjct: 293 SQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRD 352

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                 ++D+  R G ++ A+++   +  + D   W  ++
Sbjct: 353 RFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMI 391



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 110/230 (47%), Gaps = 6/230 (2%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD-LFLTNALTDMYAKCGCLNLAQN 114
           P++     +L A A    +  GK+IHA + + G   D + + N L ++Y KCG       
Sbjct: 8   PDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYK 67

Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA- 172
           VF+ IS R++VS+N LI           +L  F  M    ++    + +  ++AC+NL  
Sbjct: 68  VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM 127

Query: 173 --AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
              +  GK++H   +RK    + F+ N+++  Y + G++  +  +      +D  +WNT+
Sbjct: 128 PEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTV 186

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
           +       ++  A+     M  +GV  D  +  ++L ACSH  ++  GK+
Sbjct: 187 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKE 236



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 15/131 (11%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF--------VANSIL 200
           M +LG+K D  +F   + A A+L  ++ GK+IH        H + F        VAN+++
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHA-------HVYKFGYGVDSVTVANTLV 53

Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
           + Y + G      K+FD +  ++  SWN+LI       + + A+  F  M ++ V     
Sbjct: 54  NLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSF 113

Query: 261 SYIAILTACSH 271
           + ++++TACS+
Sbjct: 114 TLVSVVTACSN 124


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 153/418 (36%), Positives = 245/418 (58%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAEASYLFHN--IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY K S    A  +F     + K  V +NA+V+ +  N     A+ L R+M       NS
Sbjct: 84  MYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNS 143

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           VTL  ++PAC     L  G  +H   ++ G + D+ + N    MY KCG +N AQ +F+ 
Sbjct: 144 VTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDE 203

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  +  +S+N ++ GY+Q    +  L L+  M + G+  D V+ +G +S+CANL A   G
Sbjct: 204 MPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVG 263

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            E+          ++ F+ N++++ Y R G +  A  +FD +P +   SW  +I GYGM 
Sbjct: 264 HEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMH 323

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G  + A+ LF+ M   G+  D  +++ +L+ACSH GL ++G +YF  M+ +  ++P   H
Sbjct: 324 GHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEH 383

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y+CMVDLLGRAG +++A  LI+++P++PD  +WGALLGAC+I+ NVEL   A E +  L+
Sbjct: 384 YSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELE 443

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P++ GYY+LLSN+Y+ A       ++R +MK ++ KK+PGCS+V+ +  V  F+V DR
Sbjct: 444 PENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDR 501



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 180/376 (47%), Gaps = 8/376 (2%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           WN  +   A+    L+AL L  +M  H + PN+ T    L +CA       G + H +I 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDE---VSYNILIVGYSQTSDCSES 142
           + G  F+ F+   L  MY K   ++ A+ VF  +F      V YN L+ GY   S CS++
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
           + LF +M   G+  + V+ +G I AC +   ++ G  +H  T++    + + V N  +  
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM 187

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y + G ++ A K+FD +PVK   SWN ++ GY   G     + L+  M  +GV  DPV+ 
Sbjct: 188 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTL 247

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
           + +L++C++ G    G +   +MQA            ++++  R G +  A  +   +P 
Sbjct: 248 VGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMP- 306

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFM--LKPQHCGYYILLSNMYAEAGKWDEAS 380
           E     W A++G   ++G+ E+     + +    ++P    +  +LS   + AG  D+  
Sbjct: 307 ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSAC-SHAGLTDQGL 365

Query: 381 KVRELMKSREAKKNPG 396
           +  ++MK R  +  PG
Sbjct: 366 EYFKMMK-RNYQLEPG 380


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 150/415 (36%), Positives = 248/415 (59%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK      A  +F  I E+++VSW A++  F         L++  +M      PN  T
Sbjct: 235 VYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYT 293

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L +C+    +  GK++HA+I++  L+ + F+  AL DMYAK   L  A+ +FN + 
Sbjct: 294 FISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLI 353

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD  ++ +++ GY+Q     +++  F +M+  G+K +  +   ++S C+ +A +  G++
Sbjct: 354 KRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ 413

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + I+      +FVA++++D Y + G ++ A  +FD L  +D+ SWNT+I GY   G+
Sbjct: 414 LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQ 473

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+  FEAM ++G   D V++I +L+ACSH GL+E+GKK+F+ + +   + PT  HYA
Sbjct: 474 GGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYA 533

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGRAG   +    I+ + +  +  IW  +LGAC+++GN+E G  AA  LF L+P+
Sbjct: 534 CMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPE 593

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               YILLSNM+A  G WD+ + VR LM +R  KK PGCSWV+   +V  F+ +D
Sbjct: 594 IDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHD 648



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 153/336 (45%), Gaps = 3/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A  +   +  +++  WN  +++        +A+QL   M       N   
Sbjct: 33  VYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIRLNQFI 92

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +++ A A       G+ IHA + + G   D+ ++NA   MY K   +      F  + 
Sbjct: 93  FASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMM 152

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             +  S N L+ G+  T  C +   +  ++ + G + ++ +F+  +  CA+   + +GK 
Sbjct: 153 IENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKA 212

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  I+  ++    + NS+++ Y + G  + A K+F  +P +D  SW  LI G+   G 
Sbjct: 213 IHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEG- 271

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
             + + +F  M  +G   +  ++I+IL +CS    V+ GK+   ++  +S+   +     
Sbjct: 272 YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTA 331

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +VD+  +   +EDA + I N  ++ D   W  ++  
Sbjct: 332 LVDMYAKNRFLEDA-ETIFNRLIKRDLFAWTVIVAG 366



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 118/257 (45%), Gaps = 2/257 (0%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQT 136
           K+I  R+I+ G+  D  L ++L ++Y KC  L  A+ V   +  +D   +N  +   +  
Sbjct: 9   KKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSP 68

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               E++ LF  MR   ++ +   F   ISA A+L     G+ IH    +    + + ++
Sbjct: 69  YPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILIS 128

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N+ +  Y ++  ++   + F  + +++ AS N L+ G+      D    +   +  +G  
Sbjct: 129 NAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFE 188

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            +  ++I+IL  C+  G + +GK    ++    + P    +  +V++  + G    A K+
Sbjct: 189 PNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKV 248

Query: 317 IKNLPVEPDANIWGALL 333
              +P E D   W AL+
Sbjct: 249 FGEIP-ERDVVSWTALI 264


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 155/416 (37%), Positives = 242/416 (58%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  +  +++++WN M+     +    +A  +   M      P+ VT
Sbjct: 290 MYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVT 349

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              +L ACAR   L  GKEIHAR ++ GL  D+   NAL +MY+K G +  A+ VF+ + 
Sbjct: 350 YLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP 409

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  L+ GY+      ES S F +M   G++ + +++M  + AC+N  A+K GKE
Sbjct: 410 KRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKE 469

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   ++  +   L VAN+++  Y + G ++ A ++ + +  +D  +WNTLI G    G 
Sbjct: 470 IHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGR 529

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+  FE M+ + +  +  +++ +++AC    LVE+G++ F  M+ D  + PTE HYA
Sbjct: 530 GLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYA 589

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+L RAG + +A  +I  +P +P A +WGALL ACR +GNVE+G  AAE    L+PQ
Sbjct: 590 CMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQ 649

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G Y+ LS +YA AG W + +K+R+LMK R  KK PG SW++   EV  FV  D+
Sbjct: 650 NAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQ 705



 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 185/343 (53%), Gaps = 2/343 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y       EA  LF   + K++VSWN M++ +A   L  +A  L   M      P+  T
Sbjct: 88  LYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFT 147

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L AC+    L  G+E+H R++  GL  +  + NAL  MYAKCG +  A+ VF+ ++
Sbjct: 148 FVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMA 207

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RDEVS+  L   Y+++    ESL  +  M   G++   +++M  +SAC +LAA+++GK+
Sbjct: 208 SRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQ 267

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +    H+ + V+ ++   Y + G +  A ++F+CLP +D  +WNT+I G    G+
Sbjct: 268 IHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQ 327

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           ++ A  +F  M ++ V  D V+Y+AIL+AC+  G +  GK+       D +         
Sbjct: 328 LEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNA 387

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
           ++++  +AG M+DA ++   +P + D   W AL+G     G V
Sbjct: 388 LINMYSKAGSMKDARQVFDRMP-KRDVVSWTALVGGYADCGQV 429



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 160/318 (50%), Gaps = 12/318 (3%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           +S     +L +C +   L  GK++H  I+R G+  ++++ N L  +Y  CG +N A+ +F
Sbjct: 43  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLF 102

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           +  S +  VS+N++I GY+      E+ +LF+ M+  G++ D  +F+  +SAC++ AA+ 
Sbjct: 103 DKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALN 162

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G+E+H   +   L  +  V N+++  Y + G +  A ++FD +  +D  SW TL   Y 
Sbjct: 163 WGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 222

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G    ++  + AM ++GV    ++Y+ +L+AC     +EKGK+   ++          
Sbjct: 223 ESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVR 282

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF-- 353
               +  +  + G ++DA ++ + LP   D   W  ++G     G +E     A  +F  
Sbjct: 283 VSTALTKMYIKCGAVKDAREVFECLP-NRDVIAWNTMIGGLVDSGQLE----EAHGMFHR 337

Query: 354 MLK----PQHCGYYILLS 367
           MLK    P    Y  +LS
Sbjct: 338 MLKECVAPDRVTYLAILS 355



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 87/183 (47%), Gaps = 1/183 (0%)

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G + D   ++  + +C     +  GK++H   +R  +  ++++ N++L  Y   G ++ A
Sbjct: 39  GSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEA 98

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
            ++FD    K   SWN +I GY   G    A NLF  M+++G+  D  ++++IL+ACS  
Sbjct: 99  RRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSP 158

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
             +  G++    +    +         ++ +  + G + DA ++   +    + + W  L
Sbjct: 159 AALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVS-WTTL 217

Query: 333 LGA 335
            GA
Sbjct: 218 TGA 220


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 155/428 (36%), Positives = 256/428 (59%), Gaps = 15/428 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPNSV 59
           MY    +      +F  + ++ I  WNAM+A ++QN  + +AL L   M        NS 
Sbjct: 347 MYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANST 406

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T+  V+PAC R       + IH  ++++GL+ D F+ N L DMY++ G +++A  +F  +
Sbjct: 407 TMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 466

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-----------GMKHDVVSFMGAISA 167
             RD V++N +I GY  +    ++L L  +M+ L            +K + ++ M  + +
Sbjct: 467 EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPS 526

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           CA L+A+ +GKEIH   I+ +L T + V ++++D Y + G + ++ K+FD +P K+  +W
Sbjct: 527 CAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITW 586

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           N +I+ YGM G    AI+L   M   GV  + V++I++  ACSH G+V++G + F  M+ 
Sbjct: 587 NVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKP 646

Query: 288 D-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVELG 345
           D  V+P+  HYAC+VDLLGRAG +++A +L+  +P + + A  W +LLGA RI+ N+E+G
Sbjct: 647 DYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIG 706

Query: 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDE 405
             AA++L  L+P    +Y+LL+N+Y+ AG WD+A++VR  MK +  +K PGCSW++  DE
Sbjct: 707 EIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDE 766

Query: 406 VQDFVVND 413
           V  FV  D
Sbjct: 767 VHKFVAGD 774



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 205/406 (50%), Gaps = 24/406 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  + A +  L  +   +++V+WN ++++  QN   L+AL+ +REM +    P+  T
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           +++VLPAC+    LR GKE+HA  ++ G L+ + F+ +AL DMY  C  +   + VF+  
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM 364

Query: 120 FRDEVS-YNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQG 177
           F  ++  +N +I GYSQ     E+L LF  M    G+  +  +  G + AC    A  + 
Sbjct: 365 FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK 424

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + IHG  +++ L    FV N+++D Y+R G+ID+A +IF  +  +D  +WNT+I GY   
Sbjct: 425 EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 484

Query: 238 GEVDTAINLFEAMRE---------DGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQ 286
              + A+ L   M+            V   P  ++ + IL +C+    + KGK+      
Sbjct: 485 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 544

Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGA 346
            +++       + +VD+  + G ++ + K+   +P + +   W  ++ A  ++GN   G 
Sbjct: 545 KNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN---GQ 600

Query: 347 WAAEHLFML-----KPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
            A + L M+     KP    +  + +   + +G  DE  ++  +MK
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAAC-SHSGMVDEGLRIFYVMK 645



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 157/340 (46%), Gaps = 10/340 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K         +F  I+E+N VSWN+++++         AL+  R M   N  P+S T
Sbjct: 142 LYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFT 201

Query: 61  LTNVLPACAR---GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           L +V+ AC+       L  GK++HA  +RKG   + F+ N L  MY K G L  +  V  
Sbjct: 202 LVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLA-SSKVLL 259

Query: 118 ISF--RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
            SF  RD V++N ++    Q     E+L    EM L G++ D  +    + AC++L  ++
Sbjct: 260 GSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLR 319

Query: 176 QGKEIHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
            GKE+H   ++   L  + FV ++++D Y    ++    ++FD +  +    WN +I GY
Sbjct: 320 TGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGY 379

Query: 235 GMLGEVDTAINLFEAMRED-GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
                   A+ LF  M E  G+  +  +   ++ AC   G   + +     +    +   
Sbjct: 380 SQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRD 439

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                 ++D+  R G ++ A+++   +  + D   W  ++
Sbjct: 440 RFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMI 478



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 123/260 (47%), Gaps = 6/260 (2%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           W  ++ +  ++ L  +A+    +M +    P++     +L A A    +  GK+IHA + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 86  RKGLNFD-LFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESL 143
           + G   D + + N L ++Y KCG       VF+ IS R++VS+N LI           +L
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLA---AIKQGKEIHGVTIRKHLHTHLFVANSIL 200
             F  M    ++    + +  ++AC+NL     +  GK++H   +RK    + F+ N+++
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLV 243

Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
             Y + G++  +  +      +D  +WNT++       ++  A+     M  +GV  D  
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 261 SYIAILTACSHGGLVEKGKK 280
           +  ++L ACSH  ++  GK+
Sbjct: 304 TISSVLPACSHLEMLRTGKE 323


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 155/428 (36%), Positives = 256/428 (59%), Gaps = 15/428 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPNSV 59
           MY    +      +F  + ++ I  WNAM+A ++QN  + +AL L   M        NS 
Sbjct: 347 MYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANST 406

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T+  V+PAC R       + IH  ++++GL+ D F+ N L DMY++ G +++A  +F  +
Sbjct: 407 TMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 466

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-----------GMKHDVVSFMGAISA 167
             RD V++N +I GY  +    ++L L  +M+ L            +K + ++ M  + +
Sbjct: 467 EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPS 526

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           CA L+A+ +GKEIH   I+ +L T + V ++++D Y + G + ++ K+FD +P K+  +W
Sbjct: 527 CAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITW 586

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           N +I+ YGM G    AI+L   M   GV  + V++I++  ACSH G+V++G + F  M+ 
Sbjct: 587 NVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKP 646

Query: 288 D-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVELG 345
           D  V+P+  HYAC+VDLLGRAG +++A +L+  +P + + A  W +LLGA RI+ N+E+G
Sbjct: 647 DYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIG 706

Query: 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDE 405
             AA++L  L+P    +Y+LL+N+Y+ AG WD+A++VR  MK +  +K PGCSW++  DE
Sbjct: 707 EIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDE 766

Query: 406 VQDFVVND 413
           V  FV  D
Sbjct: 767 VHKFVAGD 774



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 205/406 (50%), Gaps = 24/406 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  + A +  L  +   +++V+WN ++++  QN   L+AL+ +REM +    P+  T
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           +++VLPAC+    LR GKE+HA  ++ G L+ + F+ +AL DMY  C  +   + VF+  
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM 364

Query: 120 FRDEVS-YNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQG 177
           F  ++  +N +I GYSQ     E+L LF  M    G+  +  +  G + AC    A  + 
Sbjct: 365 FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK 424

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + IHG  +++ L    FV N+++D Y+R G+ID+A +IF  +  +D  +WNT+I GY   
Sbjct: 425 EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 484

Query: 238 GEVDTAINLFEAMRE---------DGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQ 286
              + A+ L   M+            V   P  ++ + IL +C+    + KGK+      
Sbjct: 485 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 544

Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGA 346
            +++       + +VD+  + G ++ + K+   +P + +   W  ++ A  ++GN   G 
Sbjct: 545 KNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN---GQ 600

Query: 347 WAAEHLFML-----KPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
            A + L M+     KP    +  + +   + +G  DE  ++  +MK
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAAC-SHSGMVDEGLRIFYVMK 645



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 157/340 (46%), Gaps = 10/340 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K         +F  I+E+N VSWN+++++         AL+  R M   N  P+S T
Sbjct: 142 LYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFT 201

Query: 61  LTNVLPACAR---GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           L +V+ AC+       L  GK++HA  +RKG   + F+ N L  MY K G L  +  V  
Sbjct: 202 LVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLA-SSKVLL 259

Query: 118 ISF--RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
            SF  RD V++N ++    Q     E+L    EM L G++ D  +    + AC++L  ++
Sbjct: 260 GSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLR 319

Query: 176 QGKEIHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
            GKE+H   ++   L  + FV ++++D Y    ++    ++FD +  +    WN +I GY
Sbjct: 320 TGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGY 379

Query: 235 GMLGEVDTAINLFEAMRED-GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
                   A+ LF  M E  G+  +  +   ++ AC   G   + +     +    +   
Sbjct: 380 SQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRD 439

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                 ++D+  R G ++ A+++   +  + D   W  ++
Sbjct: 440 RFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMI 478



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 123/260 (47%), Gaps = 6/260 (2%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           W  ++ +  ++ L  +A+    +M +    P++     +L A A    +  GK+IHA + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 86  RKGLNFD-LFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESL 143
           + G   D + + N L ++Y KCG       VF+ IS R++VS+N LI           +L
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLA---AIKQGKEIHGVTIRKHLHTHLFVANSIL 200
             F  M    ++    + +  ++AC+NL     +  GK++H   +RK    + F+ N+++
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLV 243

Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
             Y + G++  +  +      +D  +WNT++       ++  A+     M  +GV  D  
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 261 SYIAILTACSHGGLVEKGKK 280
           +  ++L ACSH  ++  GK+
Sbjct: 304 TISSVLPACSHLEMLRTGKE 323


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 157/423 (37%), Positives = 251/423 (59%), Gaps = 16/423 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A  LF  I  K++VSWNAM++ +A+     +AL+L  EM   N  P+  T 
Sbjct: 140 YASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTY 199

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL ACA    +  G+++H+ +   G + +L + NAL D+Y+KCG +  A  +F  +S+
Sbjct: 200 VTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSY 259

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D +S+N LI GY+  +   E+L LF EM   G   + V+ +  + ACA+L AI  G+ I
Sbjct: 260 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWI 319

Query: 181 H--------GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           H        GVT    L T      S++D Y + G I+ A+++F+ +  K  +SWN +I 
Sbjct: 320 HVYIDKRLKGVTNASSLRT------SLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIF 373

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVK 291
           G+ M G  D + +LF  MR+ G+  D ++++ +L+ACSH G+++ G+  F  M  D  + 
Sbjct: 374 GFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMT 433

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
           P   HY CM+DLLG +GL ++A ++I  + +EPD  IW +LL AC+++GNVEL    A++
Sbjct: 434 PKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQN 493

Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           L  ++P++   YILLSN+YA AG+W++ +++R L+  +  KK PGCS ++    V +FVV
Sbjct: 494 LIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVV 553

Query: 412 NDR 414
            D+
Sbjct: 554 GDK 556



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 205/451 (45%), Gaps = 78/451 (17%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A+ +F  I E N + WN M+   A +   + +L L   M      PNS T   +L +CA+
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDM---------------------------- 102
                 G++IH ++++ G + DL++  +L  M                            
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 103 ---YAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
              YA  G +  AQ +F+ I  +D VS+N +I GY++T    E+L LF EM  + ++ D 
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
            +++  +SACA+  +I+ G+++H         ++L + N+++D Y++ G ++ A  +F  
Sbjct: 197 STYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQG 256

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           L  KD  SWNTLI GY  +     A+ LF+ M   G   + V+ +++L AC+H G ++ G
Sbjct: 257 LSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIG 316

Query: 279 K---KYFDE-----MQADSVKPT--EMHYAC-----------------------MV---D 302
           +    Y D+       A S++ +  +M+  C                       M+    
Sbjct: 317 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFA 376

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ---- 358
           + GRA    D    ++ + +EPD   +  LL AC   G ++LG     H+F    Q    
Sbjct: 377 MHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLG----RHIFRSMTQDYKM 432

Query: 359 --HCGYYILLSNMYAEAGKWDEASKVRELMK 387
                +Y  + ++   +G + EA ++   M+
Sbjct: 433 TPKLEHYGCMIDLLGHSGLFKEAEEMINTME 463



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 152/321 (47%), Gaps = 41/321 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K      A  LF  ++ K+++SWN ++  +    L  +AL L +EM    E PN VT
Sbjct: 240 LYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 299

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR--KGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
           + +VLPACA    +  G+ IH  I +  KG+     L  +L DMYAKCG +  A  VFN 
Sbjct: 300 MLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNS 359

Query: 119 SFRDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
                + S+N +I G++       S  LFS MR +G++ D ++F+G +SAC++   +  G
Sbjct: 360 MLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLG 419

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY-GM 236
           +             H+F   S+   Y  + +++    + D             +LG+ G+
Sbjct: 420 R-------------HIF--RSMTQDYKMTPKLEHYGCMID-------------LLGHSGL 451

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEM 295
             E +  IN  E M  DG     V + ++L AC   G VE  + +   + + +   P+  
Sbjct: 452 FKEAEEMINTME-MEPDG-----VIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSS- 504

Query: 296 HYACMVDLLGRAGLMEDAVKL 316
            Y  + ++   AG  ED  ++
Sbjct: 505 -YILLSNIYASAGRWEDVARI 524



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 117/259 (45%), Gaps = 33/259 (12%)

Query: 109 LNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
           L  A +VF  I   +++ +N +I G++ +SD   SL+L+  M  LG+  +  +F   + +
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS--------------------- 206
           CA      +G++IHG  ++      L+V  S++  Y ++                     
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSY 133

Query: 207 ----------GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
                     G I  A K+FD +PVKD  SWN +I GY   G    A+ LFE M +  V 
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            D  +Y+ +L+AC+H G +E G++    +              ++DL  + G +E A  L
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGL 253

Query: 317 IKNLPVEPDANIWGALLGA 335
            + L  + D   W  L+G 
Sbjct: 254 FQGLSYK-DVISWNTLIGG 271


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 170/428 (39%), Positives = 263/428 (61%), Gaps = 19/428 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R  ++  LF +  ++++VSWN M+++F+Q+    +AL   R M +     + VT
Sbjct: 157 MYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVT 216

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDL----FLTNALTDMYAKCGCLNLAQNVF 116
           + +VLPAC+    L  GKEIHA ++R   N DL    F+ +AL DMY  C  +   + VF
Sbjct: 217 IASVLPACSHLERLDVGKEIHAYVLR---NNDLIENSFVGSALVDMYCNCRQVESGRRVF 273

Query: 117 N--ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACA-NLA 172
           +  +  R E+ +N +I GY++     ++L LF EM ++ G+  +  +    + AC  +LA
Sbjct: 274 DHILGRRIEL-WNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLA 332

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           AI +GKEIH   IR  L + + V ++++D Y + G ++L+ ++F+ +P K+  +WN LI+
Sbjct: 333 AIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIM 392

Query: 233 GYGMLGEVDTAINLFEAM-REDGVGYDP----VSYIAILTACSHGGLVEKGKKYFDEMQA 287
             GM G+ + A+ LF+ M  E G G +     V++I +  ACSH GL+ +G   F  M+ 
Sbjct: 393 ACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKH 452

Query: 288 D-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVELG 345
           D  V+PT  HYAC+VDLLGRAG +E+A +L+  +P E D    W +LLGACRI+ NVELG
Sbjct: 453 DHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELG 512

Query: 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDE 405
             AA++L  L+P    +Y+LLSN+Y+ AG W++A +VR+ M+    KK PGCSW++ RDE
Sbjct: 513 EVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDE 572

Query: 406 VQDFVVND 413
           V  F+  D
Sbjct: 573 VHKFMAGD 580



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 177/385 (45%), Gaps = 45/385 (11%)

Query: 21  KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80
           ++  SW   + +  ++    +A+    EM +    P++     VL A +    L+ G++I
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 81  HARIIR---------------------KGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           HA  ++                      G+    F  NAL  MYAK G ++ ++ +F  S
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE-S 173

Query: 120 F--RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           F  RD VS+N +I  +SQ+   SE+L+ F  M L G++ D V+    + AC++L  +  G
Sbjct: 174 FVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVG 233

Query: 178 KEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           KEIH   +R + L  + FV ++++D Y    +++   ++FD +  +    WN +I GY  
Sbjct: 234 KEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYAR 293

Query: 237 LGEVDTAINLF-EAMREDGVGYDPVSYIAILTACSHG-GLVEKGKKYFDEMQADSVKPTE 294
            G  + A+ LF E ++  G+  +  +  +++ AC H    + KGK+       + +    
Sbjct: 294 NGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDI 353

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
              + +VD+  + G +  + ++   +P   +   W  L+ AC ++G    G  A E    
Sbjct: 354 TVGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMHGK---GEEALE---- 405

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEA 379
                     L  NM AEAG+  EA
Sbjct: 406 ----------LFKNMVAEAGRGGEA 420


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 161/428 (37%), Positives = 250/428 (58%), Gaps = 11/428 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+       A  +F    ++ I  WNA+           + L L  +M       +  T
Sbjct: 121 MYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFT 180

Query: 61  LTNVLPACARGH----FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
            T VL AC         L  GKEIHA + R+G N  +++   L DMYA+ GC++ A  VF
Sbjct: 181 YTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFMGAISACANLAA 173
           N +  R+ VS++ +I  Y++     E+L  F EM         + V+ +  + ACA+LAA
Sbjct: 241 NGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAA 300

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           ++QG+ IHG  +R+ L + L V ++++  Y R G++D+  ++FD +  +D  SWN+LI  
Sbjct: 301 LEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISS 360

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKP 292
           YG+ G    AI +FE M  +G    PV+++++L ACSH GLVE+GK+ F+ M  D  +KP
Sbjct: 361 YGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKP 420

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
              HYACMVDLLGRA  +++A K+++++  EP   +WG+LLG+CRI+GNVEL   A+  L
Sbjct: 421 QVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRL 480

Query: 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVN 412
           F L+P++ G Y+LL+++YAEA  WDE  +V++L++ R  +K PG  W++ R ++  FV  
Sbjct: 481 FALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFV-- 538

Query: 413 DRMKTFTP 420
             M  F P
Sbjct: 539 -SMDEFNP 545



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 171/385 (44%), Gaps = 51/385 (13%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P+  T   ++  C     L  G  +H  I+  G + D FL   L  MY+  G ++ A+ V
Sbjct: 75  PSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 116 FNISFRDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA----N 170
           F+ + +  +  +N L    +      E L L+ +M  +G++ D  ++   + AC      
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
              + +GKEIH    R+  ++H+++  +++D Y R G +D A+ +F+ +PV++  SW+ +
Sbjct: 195 ADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAM 254

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGK---KYFDEM 285
           I  Y   G+   A+  F  M  +     P  V+ +++L AC+    +E+G+    Y    
Sbjct: 255 IACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRR 314

Query: 286 QADSVKPTEMHYACMVDLLGRAGLME-------------------------------DAV 314
             DS+ P     + +V + GR G ++                                A+
Sbjct: 315 GLDSILPV---ISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAI 371

Query: 315 KLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFM---LKPQHCGYYILLSN 368
           ++ + +      P    + ++LGAC   G VE G    E ++    +KPQ   +Y  + +
Sbjct: 372 QIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQ-VEHYACMVD 430

Query: 369 MYAEAGKWDEASKVRELMKSREAKK 393
           +   A + DEA+K+ + M++    K
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPK 455


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 157/418 (37%), Positives = 248/418 (59%), Gaps = 3/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN-EFPNSV 59
           MY K     +A  LF  +  K++VSWN++++  +        L     M   +   PN V
Sbjct: 106 MYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEV 165

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL +V+ ACA    L  GK +H  +++ G++    + N+L +MY K G L+ A  +F  +
Sbjct: 166 TLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEM 225

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R  VS+N ++V ++      + + LF+ M+  G+  D  + +  + AC +    +Q +
Sbjct: 226 PVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAE 285

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH    R   +  + +A ++L+ Y + GR++ +  IF+ +  +D  +W  ++ GY +  
Sbjct: 286 SIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHA 345

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               AI LF+ M ++GV  D V++  +L+ACSH GLVE+GKKYF+ M +   V+P   HY
Sbjct: 346 CGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY 405

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +CMVDLLGR+G +EDA +LIK++P+EP + +WGALLGACR+YGNVELG   AE L  L P
Sbjct: 406 SCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDP 465

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
                YI+LSN+Y+ AG W +ASKVR LMK R   +NPGCS+++  +++  FVV D++
Sbjct: 466 SDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQL 523



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 137/262 (52%), Gaps = 11/262 (4%)

Query: 80  IHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
           IHAR+I K LN+ D F+ + L  MY K G    AQ +F+ +  +D VS+N L+ G S   
Sbjct: 84  IHARVI-KSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRG 142

Query: 138 DCSESLSLFSEMRL-LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
                L+ F  MR   G + + V+ +  +SACA++ A+ +GK +HGV ++  +     V 
Sbjct: 143 YLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVV 202

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           NS+++ Y + G +D A+++F+ +PV+   SWN++++ +   G  +  ++LF  M+  G+ 
Sbjct: 203 NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGIN 262

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL---LGRAGLMEDA 313
            D  + +A+L AC+  GL  + +     +         +    +++L   LGR    ED 
Sbjct: 263 PDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDI 322

Query: 314 VKLIKNLPVEPDANIWGALLGA 335
            + IK    + D   W A+L  
Sbjct: 323 FEEIK----DRDRIAWTAMLAG 340



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 119/275 (43%), Gaps = 51/275 (18%)

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
           V S + AIS+C +++       IH   I+   ++  F+ + ++  Y + G  + A ++FD
Sbjct: 65  VQSLVFAISSCTSVSYCSA---IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFD 121

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVE 276
            +P KD  SWN+L+ G    G +   +N F  MR E G   + V+ +++++AC+  G ++
Sbjct: 122 EMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALD 181

Query: 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE------------- 323
           +GK     +    +         ++++ G+ G ++ A +L + +PV              
Sbjct: 182 EGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHN 241

Query: 324 ---------------------PDANIWGALLGACRIYGNVELGAWAAE-HLFMLKPQHCG 361
                                PD     ALL AC   G   LG  A   H ++     CG
Sbjct: 242 HNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTG---LGRQAESIHAYI---HRCG 295

Query: 362 Y------YILLSNMYAEAGKWDEASKVRELMKSRE 390
           +         L N+YA+ G+ + +  + E +K R+
Sbjct: 296 FNADIIIATALLNLYAKLGRLNASEDIFEEIKDRD 330


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 157/418 (37%), Positives = 248/418 (59%), Gaps = 3/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN-EFPNSV 59
           MY K     +A  LF  +  K++VSWN++++  +        L     M   +   PN V
Sbjct: 163 MYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEV 222

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL +V+ ACA    L  GK +H  +++ G++    + N+L +MY K G L+ A  +F  +
Sbjct: 223 TLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEM 282

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R  VS+N ++V ++      + + LF+ M+  G+  D  + +  + AC +    +Q +
Sbjct: 283 PVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAE 342

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH    R   +  + +A ++L+ Y + GR++ +  IF+ +  +D  +W  ++ GY +  
Sbjct: 343 SIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHA 402

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               AI LF+ M ++GV  D V++  +L+ACSH GLVE+GKKYF+ M +   V+P   HY
Sbjct: 403 CGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY 462

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +CMVDLLGR+G +EDA +LIK++P+EP + +WGALLGACR+YGNVELG   AE L  L P
Sbjct: 463 SCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDP 522

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
                YI+LSN+Y+ AG W +ASKVR LMK R   +NPGCS+++  +++  FVV D++
Sbjct: 523 SDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQL 580



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 137/262 (52%), Gaps = 11/262 (4%)

Query: 80  IHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
           IHAR+I K LN+ D F+ + L  MY K G    AQ +F+ +  +D VS+N L+ G S   
Sbjct: 141 IHARVI-KSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRG 199

Query: 138 DCSESLSLFSEMRL-LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
                L+ F  MR   G + + V+ +  +SACA++ A+ +GK +HGV ++  +     V 
Sbjct: 200 YLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVV 259

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           NS+++ Y + G +D A+++F+ +PV+   SWN++++ +   G  +  ++LF  M+  G+ 
Sbjct: 260 NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGIN 319

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL---LGRAGLMEDA 313
            D  + +A+L AC+  GL  + +     +         +    +++L   LGR    ED 
Sbjct: 320 PDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDI 379

Query: 314 VKLIKNLPVEPDANIWGALLGA 335
            + IK    + D   W A+L  
Sbjct: 380 FEEIK----DRDRIAWTAMLAG 397



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 119/275 (43%), Gaps = 51/275 (18%)

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
           V S + AIS+C +++       IH   I+   ++  F+ + ++  Y + G  + A ++FD
Sbjct: 122 VQSLVFAISSCTSVSYCSA---IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFD 178

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVE 276
            +P KD  SWN+L+ G    G +   +N F  MR E G   + V+ +++++AC+  G ++
Sbjct: 179 EMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALD 238

Query: 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE------------- 323
           +GK     +    +         ++++ G+ G ++ A +L + +PV              
Sbjct: 239 EGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHN 298

Query: 324 ---------------------PDANIWGALLGACRIYGNVELGAWAAE-HLFMLKPQHCG 361
                                PD     ALL AC   G   LG  A   H ++     CG
Sbjct: 299 HNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTG---LGRQAESIHAYI---HRCG 352

Query: 362 Y------YILLSNMYAEAGKWDEASKVRELMKSRE 390
           +         L N+YA+ G+ + +  + E +K R+
Sbjct: 353 FNADIIIATALLNLYAKLGRLNASEDIFEEIKDRD 387


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 156/418 (37%), Positives = 248/418 (59%), Gaps = 3/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN-EFPNSV 59
           MY K     +A  LF  +  +++VSWN++++  +        L     M   +   PN V
Sbjct: 183 MYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEV 242

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL +V+ ACA    L  GK +H  +++ G++    + N+L +MY K G L+ A  +F  +
Sbjct: 243 TLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEM 302

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R  VS+N ++V ++      + + LF+ M+  G+  D  + +  + AC +    +Q +
Sbjct: 303 PVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAE 362

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH    R   +  + +A ++L+ Y + GR++ +  IF+ +  +D+ +W  ++ GY +  
Sbjct: 363 SIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHA 422

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               AI LF+ M ++GV  D V++  +L+ACSH GLVE+GKKYF+ M +   V+P   HY
Sbjct: 423 CGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY 482

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +CMVDLLGR+G +EDA +LIK++P+EP + +WGALLGACR+YGNVELG   AE L  L P
Sbjct: 483 SCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDP 542

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
                YI+LSN+Y+ AG W  ASKVR LMK R   +NPGCS+++  +++  FVV D++
Sbjct: 543 SDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQL 600



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 138/266 (51%), Gaps = 11/266 (4%)

Query: 80  IHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
           IHAR+I K LN+ D F+ + L  MY K G    AQ +F+ +  RD VS+N L+ G S   
Sbjct: 161 IHARVI-KSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRG 219

Query: 138 DCSESLSLFSEMRL-LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
                L+ F  MR   G + + V+ +  +SACA + A+ +GK +HGV ++  +     V 
Sbjct: 220 YLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVV 279

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           NS+++ Y + G +D A+++F+ +PV+   SWN++++ +   G  +  ++LF  M+  G+ 
Sbjct: 280 NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGIN 339

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL---LGRAGLMEDA 313
            D  + +A+L AC+  GL  + +     +         +    +++L   LGR    ED 
Sbjct: 340 PDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDI 399

Query: 314 VKLIKNLPVEPDANIWGALLGACRIY 339
            + IK    + D   W A+L    ++
Sbjct: 400 FEEIK----DRDTIAWTAMLAGYAVH 421



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 119/276 (43%), Gaps = 51/276 (18%)

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
           V S + AIS+C +++       IH   I+   ++  F+ + ++  Y + G  + A ++FD
Sbjct: 142 VQSLVFAISSCTSVSYCSA---IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFD 198

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVE 276
            +P +D  SWN+L+ G    G +   +N F  MR E G   + V+ +++++AC+  G ++
Sbjct: 199 EMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALD 258

Query: 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE------------- 323
           +GK     +    +         ++++ G+ G ++ A +L + +PV              
Sbjct: 259 EGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHN 318

Query: 324 ---------------------PDANIWGALLGACRIYGNVELGAWAAE-HLFMLKPQHCG 361
                                PD     ALL AC   G   LG  A   H ++     CG
Sbjct: 319 HNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTG---LGRQAESIHAYI---HRCG 372

Query: 362 Y------YILLSNMYAEAGKWDEASKVRELMKSREA 391
           +         L N+YA+ G+ + +  + E +K R+ 
Sbjct: 373 FNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDT 408


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 152/415 (36%), Positives = 256/415 (61%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MYAK     EA  LF  +  K++VSW  +++ ++Q+    +AL L  +M +H  F PN  
Sbjct: 149 MYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKM-LHLGFQPNEF 207

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL+++L A   G     G+++HA  ++ G + ++ + ++L DMYA+   +  A+ +FN +
Sbjct: 208 TLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSL 267

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + ++ VS+N LI G+++  +    + LF +M   G +    ++    +ACA+  +++QGK
Sbjct: 268 AAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGK 327

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H   I+       ++ N+++D Y +SG I  A K+F  L  +D  SWN++I GY   G
Sbjct: 328 WVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHG 387

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
               A+ LFE M +  V  + ++++++LTACSH GL+++G+ YF+ M+   ++    H+ 
Sbjct: 388 LGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHV 447

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            +VDLLGRAG + +A K I+ +P++P A +WGALLG+CR++ N++LG +AAE +F L P 
Sbjct: 448 TVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPH 507

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             G ++LLSN+YA AG+  +A+KVR++MK    KK P CSWV+  +EV  FV ND
Sbjct: 508 DSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVAND 562



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 169/342 (49%), Gaps = 13/342 (3%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P     + +L  C     L+ G+ IHA I       DL L N + +MYAKCG L  AQ++
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDL 162

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ +  +D VS+ +LI GYSQ+   SE+L+LF +M  LG + +  +    + A     + 
Sbjct: 163 FDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSD 222

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G+++H  +++     ++ V +S+LD Y R   +  A  IF+ L  K+  SWN LI G+
Sbjct: 223 HHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGH 282

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              GE +  + LF  M   G      +Y ++ TAC+  G +E+GK     +     +P  
Sbjct: 283 ARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIA 342

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF- 353
                ++D+  ++G ++DA K+ + L V+ D   W +++     Y    LGA A + LF 
Sbjct: 343 YIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISG---YAQHGLGAEALQ-LFE 397

Query: 354 -MLK----PQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390
            MLK    P    +  +L+   + +G  DE     ELMK  +
Sbjct: 398 QMLKAKVQPNEITFLSVLTAC-SHSGLLDEGQYYFELMKKHK 438


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 158/416 (37%), Positives = 258/416 (62%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK         +F  + +K++VSW  ++A  AQN    +AL+L RE+ +     + + 
Sbjct: 463 MYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMM 522

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++++L AC+    +   KEIH+ IIRKGL+ DL L N + D+Y +CG ++ A  +F  I 
Sbjct: 523 ISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIE 581

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           F+D VS+  +I  Y      +E+L LF  M+  G++ D +S +  +SA A+L+A+K+GKE
Sbjct: 582 FKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKE 641

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  IRK       +A++++D Y R G ++ +  +F+ +  KD   W ++I  YGM G 
Sbjct: 642 IHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGC 701

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AI+LF  M ++ +  D ++++A+L ACSH GL+ +G+++ + M+ +  ++P   HY 
Sbjct: 702 GRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYV 761

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGRA  +E+A + +K + VEP A +W ALLGAC+I+ N ELG  AA+ L  + P+
Sbjct: 762 CLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPE 821

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G Y+L+SN+YA   +W +  +VR  MK+   KKNPGCSW++  ++V  F+  D+
Sbjct: 822 NPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDK 877



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 181/354 (51%), Gaps = 5/354 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MY K +    A  LF  + EK ++VSWN+M++ ++ N   ++AL+L  EM   +  PN+ 
Sbjct: 260 MYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTY 319

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T    L AC    F++ G  IHA +++     ++F+ NAL  MYA+ G +  A N+F N+
Sbjct: 320 TFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNM 379

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              D +S+N ++ G+ Q     E+L  + EMR  G K D+V+ +  I+A A       G 
Sbjct: 380 DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGM 439

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH   ++  L + L V NS++D Y +   +   + IFD +P KD  SW T+I G+   G
Sbjct: 440 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG 499

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
               A+ LF  ++ +G+  D +   +IL ACS   L+   K+    +    +    +   
Sbjct: 500 SHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNG 559

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
            +VD+ G  G ++ A ++ + +  + D   W +++ +C ++  +   A    HL
Sbjct: 560 -IVDVYGECGNVDYAARMFELIEFK-DVVSWTSMI-SCYVHNGLANEALELFHL 610



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/275 (32%), Positives = 143/275 (52%), Gaps = 2/275 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  LF  +  K I +WNAM+  +  N   L +L+L REM +     ++ T
Sbjct: 159 MYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACT 218

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--I 118
              +L AC      R G E+H   I++G    +F+ N++  MY KC  LN A+ +F+   
Sbjct: 219 FPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMP 278

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              D VS+N +I  YS      E+L LF EM+   +  +  +F+ A+ AC + + IKQG 
Sbjct: 279 EKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGM 338

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH   ++   + ++FVAN+++  Y R G++  A  IF  +   D+ SWN+++ G+   G
Sbjct: 339 FIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNG 398

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
               A+  +  MR+ G   D V+ I+I+ A +  G
Sbjct: 399 LYHEALQFYHEMRDAGQKPDLVAVISIIAASARSG 433



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 146/290 (50%), Gaps = 8/290 (2%)

Query: 53  NEFPNSVTL----TNVLPACARGHFLRPGKEIHARIIRKGLNFD-LFLTNALTDMYAKCG 107
           N+ P+  +L    ++VL  C     L  G+++HA +I     F+ +FL+  L  MY KCG
Sbjct: 105 NQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCG 164

Query: 108 CLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS 166
           CL  A+ +F+ +  +   ++N +I  Y    +   SL L+ EMR+ G+  D  +F   + 
Sbjct: 165 CLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILK 224

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSA 225
           AC  L   + G E+HG+ I++   + +FVANSI+  YT+   ++ A ++FD +P K D  
Sbjct: 225 ACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVV 284

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           SWN++I  Y   G+   A+ LF  M++  +  +  +++A L AC     +++G      +
Sbjct: 285 SWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATV 344

Query: 286 QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
              S          ++ +  R G M +A  +  N+  + D   W ++L  
Sbjct: 345 LKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD-DWDTISWNSMLSG 393



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 112/264 (42%), Gaps = 45/264 (17%)

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDC 218
           ++   +  C +  A+ +G+++H   I  + L   +F++  ++  Y + G +  A K+FD 
Sbjct: 116 AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 175

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P K   +WN +I  Y   GE   ++ L+  MR  G+  D  ++  IL AC   GL+ K 
Sbjct: 176 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC---GLL-KD 231

Query: 279 KKYFDEMQADSVKPTEMHYA----CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
           ++   E+   ++K   +        +V +  +   +  A +L   +P + D   W +++ 
Sbjct: 232 RRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMIS 291

Query: 335 ----------ACRIYGNVELGAWAAE-HLFMLKPQHC-------------------GYYI 364
                     A R++G ++  + A   + F+   Q C                    YYI
Sbjct: 292 AYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI 351

Query: 365 ------LLSNMYAEAGKWDEASKV 382
                  L  MYA  GK  EA+ +
Sbjct: 352 NVFVANALIAMYARFGKMGEAANI 375


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 152/436 (34%), Positives = 253/436 (58%), Gaps = 37/436 (8%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACARGHF 73
           F  +AE++IV+WN+M++ + Q   +L+AL +  +M   +   P+  TL +VL ACA    
Sbjct: 235 FEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEK 294

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC------------------------- 108
           L  G++IH+ I+  G +    + NAL  MY++CG                          
Sbjct: 295 LCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALL 354

Query: 109 --------LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
                   +N A+N+F+ +  RD V++  +IVGY Q     E+++LF  M     + +  
Sbjct: 355 DGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSY 414

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           +    +S  ++LA++  GK+IHG  ++      + V+N+++  Y ++G I  A++ FD +
Sbjct: 415 TLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLI 474

Query: 220 PV-KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
              +D+ SW ++I+     G  + A+ LFE M  +G+  D ++Y+ + +AC+H GLV +G
Sbjct: 475 RCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQG 534

Query: 279 KKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
           ++YFD M+  D + PT  HYACMVDL GRAGL+++A + I+ +P+EPD   WG+LL ACR
Sbjct: 535 RQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACR 594

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           +Y N++LG  AAE L +L+P++ G Y  L+N+Y+  GKW+EA+K+R+ MK    KK  G 
Sbjct: 595 VYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGF 654

Query: 398 SWVQTRDEVQDFVVND 413
           SW++ + +V  F V D
Sbjct: 655 SWIEVKHKVHAFGVED 670



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 197/458 (43%), Gaps = 77/458 (16%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      +   F  + +++ VSW  M+  +       KA++++ EM      P+  TL
Sbjct: 90  YAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTL 149

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---- 117
           TNVL + A    L  GK++H+ I++ GL  ++ ++N+L +MYAKCG   +A+ VF+    
Sbjct: 150 TNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVV 209

Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                       ++ RD V++N +I GY+Q      +L +FS+M
Sbjct: 210 KDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKM 269

Query: 150 -RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
            R   +  D  +    +SACANL  +  G++IH   +         V N+++  Y+R G 
Sbjct: 270 LRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGG 329

Query: 209 IDLANK---------------------------------IFDCLPVKDSASWNTLILGYG 235
           ++ A +                                 IFD L  +D  +W  +I+GY 
Sbjct: 330 VETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYE 389

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G    AINLF +M  +    +  +  A+L+  S    +  GK    ++   +VK  E+
Sbjct: 390 QHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGK----QIHGSAVKSGEI 445

Query: 296 HYA----CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
           +       ++ +  +AG +  A +    +  E D   W +++ A   +G+ E      E 
Sbjct: 446 YSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFET 505

Query: 352 LFM--LKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           + M  L+P H  Y  + S     AG  ++  +  ++MK
Sbjct: 506 MLMEGLRPDHITYVGVFSAC-THAGLVNQGRQYFDMMK 542



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 125/235 (53%), Gaps = 6/235 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K     EA  +F ++ ++++V+W AM+  + Q+ L  +A+ L R M    + PNS TL
Sbjct: 357 YIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTL 416

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI--S 119
             +L   +    L  GK+IH   ++ G  + + ++NAL  MYAK G +  A   F++   
Sbjct: 417 AAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRC 476

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  +I+  +Q     E+L LF  M + G++ D ++++G  SAC +   + QG++
Sbjct: 477 ERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQ 536

Query: 180 IHGVT--IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
              +   + K + T    A  ++D + R+G +  A +  + +P++ D  +W +L+
Sbjct: 537 YFDMMKDVDKIIPTLSHYA-CMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLL 590



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 128/277 (46%), Gaps = 48/277 (17%)

Query: 56  PNSVTLTNVLPAC----------ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK 105
           P  ++L+ +L  C          + G F    + +H R+I+ GL F ++L N L ++Y+K
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRF--TAQLVHCRVIKSGLVFSVYLMNNLMNVYSK 61

Query: 106 CGCLNLAQNVFN--------------------------------ISFRDEVSYNILIVGY 133
            G    A+ +F+                                +  RD VS+  +IVGY
Sbjct: 62  TGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGY 121

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
                  +++ +  EM   G++    +    +++ A    ++ GK++H   ++  L  ++
Sbjct: 122 KNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNV 181

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
            V+NS+L+ Y + G   +A  +FD + VKD +SWN +I  +  +G++D A+  FE M E 
Sbjct: 182 SVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAER 241

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
               D V++ ++++  +  G   +    F +M  DS+
Sbjct: 242 ----DIVTWNSMISGYNQRGYDLRALDMFSKMLRDSM 274



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 63/115 (54%), Gaps = 4/115 (3%)

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+  L   +++ N++++ Y+++G    A K+FD +P++ + SWNT++  Y   G+
Sbjct: 36  VHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGD 95

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
           +D++   F+ + +     D VS+  ++    + G   K  +   EM  + ++P++
Sbjct: 96  MDSSCEFFDRLPQR----DSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQ 146


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 149/418 (35%), Positives = 262/418 (62%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YA+  R  +   +F  +  ++++SWN+++  +  N   L+A+ L +EM +    P+ +T
Sbjct: 291 LYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLT 350

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           L ++    ++   +R  + +    +RKG    D+ + NA+  MYAK G ++ A+ VFN +
Sbjct: 351 LISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL 410

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQG 177
              D +S+N +I GY+Q    SE++ +++ M   G +  +  +++  + AC+   A++QG
Sbjct: 411 PNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQG 470

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            ++HG  ++  L+  +FV  S+ D Y + GR++ A  +F  +P  +S  WNTLI  +G  
Sbjct: 471 MKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFH 530

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G  + A+ LF+ M ++GV  D ++++ +L+ACSH GLV++G+  F+ MQ D  + P+  H
Sbjct: 531 GHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKH 590

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y CMVD+ GRAG +E A+K IK++ ++PDA+IWGALL ACR++GNV+LG  A+EHLF ++
Sbjct: 591 YGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVE 650

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P+H GY++LLSNMYA AGKW+   ++R +   +  +K PG S ++  ++V+ F   ++
Sbjct: 651 PEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQ 708



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 143/275 (52%), Gaps = 9/275 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +Y      A A + F +I  +++ +WN M++ + +     + ++      + +   P+  
Sbjct: 95  LYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYR 154

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T  +VL AC     +  G +IH   ++ G  +D+++  +L  +Y++   +  A+ +F+ +
Sbjct: 155 TFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEM 211

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD  S+N +I GY Q+ +  E+L+L + +R +    D V+ +  +SAC       +G 
Sbjct: 212 PVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGV 267

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH  +I+  L + LFV+N ++D Y   GR+    K+FD + V+D  SWN++I  Y +  
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNE 327

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
           +   AI+LF+ MR   +  D ++ I++ +  S  G
Sbjct: 328 QPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 362



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 9/172 (5%)

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C NL   +  K +H   +      ++ ++  +++ Y   G + LA   FD +  +D  +W
Sbjct: 64  CTNL---QSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAW 120

Query: 228 NTLILGYGMLGEVDTAINLFEA-MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
           N +I GYG  G     I  F   M   G+  D  ++ ++L AC    +++  K +   ++
Sbjct: 121 NLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR--TVIDGNKIHCLALK 178

Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL-GACR 337
              +    +  A ++ L  R   + +A  L   +PV  D   W A++ G C+
Sbjct: 179 FGFMWDVYVA-ASLIHLYSRYKAVGNARILFDEMPVR-DMGSWNAMISGYCQ 228


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 156/415 (37%), Positives = 242/415 (58%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +     +A  +F  +A +N+ +WNAM+   AQ +   +AL L  +M     FP++ T
Sbjct: 379 MYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATT 438

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             N+L A      L   KE+H+  I  GL  DL + NAL  MYAKCG    A+ VF+ + 
Sbjct: 439 FVNILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMV 497

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+  ++ ++I G +Q     E+ SLF +M   G+  D  +++  +SACA+  A++  KE
Sbjct: 498 ERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKE 557

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +   L + L V N+++  Y + G +D A ++FD +  +D  SW  +I G    G 
Sbjct: 558 VHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGR 617

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++LF  M+ +G   +  S++A+L+ACSH GLV++G++ F  +  D  ++PT  HY 
Sbjct: 618 GLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYT 677

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAG +E+A   I N+P+EP    WGALLGAC  YGN+E+  +AA+    LKP+
Sbjct: 678 CMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPK 737

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               Y+LLSN+YA  G W++   VR +M+ R  +K PG SW++  +++  FVV D
Sbjct: 738 SASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGD 792



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 193/433 (44%), Gaps = 49/433 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS    +A  +F  + E++I SW  M+   AQ+    +A  L  +M      PN  T
Sbjct: 175 MYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTT 234

Query: 61  LTNVLPACA--RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
             ++L A A      L   KE+H    + G   DL + NAL  MYAKCG ++ A+ VF+ 
Sbjct: 235 YLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDG 294

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  RD +S+N +I G +Q     E+ ++F +M+  G   D  +++  ++   +  A +  
Sbjct: 295 MCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWV 354

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           KE+H   +   L + L V ++ +  Y R G ID A  IFD L V++  +WN +I G    
Sbjct: 355 KEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQ 414

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTA----------------CSHGGLVE----- 276
                A++LF  MR +G   D  +++ IL+A                    GLV+     
Sbjct: 415 KCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGN 474

Query: 277 -------------KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
                          K+ FD+M   +V      +  M+  L + G   +A  L   +  E
Sbjct: 475 ALVHMYAKCGNTMYAKQVFDDMVERNVTT----WTVMISGLAQHGCGHEAFSLFLQMLRE 530

Query: 324 ---PDANIWGALLGACRIYGNVELGAWAAEHLF---MLKPQHCGYYILLSNMYAEAGKWD 377
              PDA  + ++L AC   G +E       H     ++     G    L +MYA+ G  D
Sbjct: 531 GIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGN--ALVHMYAKCGSVD 588

Query: 378 EASKVRELMKSRE 390
           +A +V + M  R+
Sbjct: 589 DARRVFDDMLERD 601



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 159/338 (47%), Gaps = 4/338 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  + E+N++SW  M+   A      +A     +M      PNS T
Sbjct: 74  MYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYT 133

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L A A    L   KE+H+  +  GL  DL + NAL  MYAK G ++ A+ VF+ + 
Sbjct: 134 YVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMV 193

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA--NLAAIKQG 177
            RD  S+ ++I G +Q     E+ SLF +M   G   ++ +++  ++A A  +  A++  
Sbjct: 194 ERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWV 253

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           KE+H    +    + L V N+++  Y + G ID A  +FD +  +D  SWN +I G    
Sbjct: 254 KEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQN 313

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G    A  +F  M+++G   D  +Y+++L      G  E  K+         +       
Sbjct: 314 GCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVG 373

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +  V +  R G ++DA  +   L V  +   W A++G 
Sbjct: 374 SAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGG 410



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 174/366 (47%), Gaps = 17/366 (4%)

Query: 29  MVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKG 88
           M+  +A+      A+++  +M      PN +T  ++L AC     L+ GK+IHA II+ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 89  LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
              D+ +  AL +MY KCG ++ AQ +F+ +  R+ +S+ ++I G +      E+   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           +M+  G   +  +++  ++A A+  A++  KE+H   +   L   L V N+++  Y +SG
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
            ID A  +FD +  +D  SW  +I G    G    A +LF  M   G   +  +Y++IL 
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 268 A---CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           A    S G L    + +    +A  +    +  A ++ +  + G ++DA +L+ +   + 
Sbjct: 241 ASAITSTGALEWVKEVHKHAGKAGFISDLRVGNA-LIHMYAKCGSIDDA-RLVFDGMCDR 298

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY------YILLSNMYAEAGKWDE 378
           D   W A++G     G  + G         LK Q  G+      Y+ L N +   G W+ 
Sbjct: 299 DVISWNAMIG-----GLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEW 353

Query: 379 ASKVRE 384
             +V +
Sbjct: 354 VKEVHK 359


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 149/417 (35%), Positives = 252/417 (60%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIA--EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           +YAK  R   A  +F  +   E+ IVSW A+V+ +AQN   ++AL++  +M   +  P+ 
Sbjct: 163 LYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDC 222

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           V L +VL A      L  G+ IHA +++ GL  +  L  +L  MYAKCG +  A+ +F+ 
Sbjct: 223 VALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDK 282

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +   + + +N +I GY++     +++ LF EM    ++ D +S   AISACA + +++Q 
Sbjct: 283 MKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQA 342

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + +     R      +F++++++D + + G ++ A  +FD    +D   W+ +I+GYG+ 
Sbjct: 343 RWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLH 402

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G+   AI+L+ AM  DGV  + V+++ +L AC+H G+V +G  +F+ M    + P + HY
Sbjct: 403 GQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHY 462

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           AC++DLLGRAG ++ A ++IK +PV+P   +WGALL AC+ + +VELG +AA+ LF + P
Sbjct: 463 ACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDP 522

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            + G+Y+ LSN+YA A  WD  ++VR  MK +   K+ GCSWV+ R  ++ F V D+
Sbjct: 523 SNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDK 579



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 172/335 (51%), Gaps = 6/335 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F ++    +  WNA++  +++N     AL +  +M +    P+S T  ++L AC  
Sbjct: 72  ARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGG 131

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---ISFRDEVSYN 127
              L+ G+ +HA++ R G   D+F+ N L  +YAKC  L  A+ VF    +  R  VS+ 
Sbjct: 132 LSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWT 191

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            ++  Y+Q  +  E+L +FS+MR + +K D V+ +  ++A   L  ++QG+ IH   ++ 
Sbjct: 192 AIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKM 251

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            L T   +  S+   Y + G++  A  +FD +   +   WN +I GY   G    AI+LF
Sbjct: 252 GLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLF 311

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY-ACMVDLLGR 306
             M    V  D +S  + ++AC+  G +E+  ++ DE  + S    ++   + ++D+  +
Sbjct: 312 HEMINKDVRPDTISITSAISACAQVGSLEQA-RWMDEYVSRSDYRDDVFISSALIDMFAK 370

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
            G +E A + + +  ++ D  +W A++    ++G 
Sbjct: 371 CGSVECA-RSVFDRTLDRDVVVWSAMIVGYGLHGQ 404



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 140/316 (44%), Gaps = 45/316 (14%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEV-SYNILIVGYSQT 136
           ++IHAR++  GL F  FL   L    +  G +  A+ VF+   R +V  +N +I GYS+ 
Sbjct: 38  RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRN 97

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
           +   ++L ++S+M+L  +  D  +F   + AC  L+ ++ G+ +H    R      +FV 
Sbjct: 98  NHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQ 157

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSA--SWNTLILGYGMLGEVDTAINLFEAMREDG 254
           N ++  Y +  R+  A  +F+ LP+ +    SW  ++  Y   GE   A+ +F  MR+  
Sbjct: 158 NGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMD 217

Query: 255 VGYDPVSYIAILTACS-----------HG------------------------GLVEKGK 279
           V  D V+ +++L A +           H                         G V   K
Sbjct: 218 VKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAK 277

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK---NLPVEPDANIWGALLGAC 336
             FD+M++    P  + +  M+    + G  +DA+ L     N  V PD     + + AC
Sbjct: 278 ILFDKMKS----PNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISAC 333

Query: 337 RIYGNVELGAWAAEHL 352
              G++E   W  E++
Sbjct: 334 AQVGSLEQARWMDEYV 349



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           Q ++IH   +   L    F+   ++   +  G I  A ++FD LP      WN +I GY 
Sbjct: 36  QLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYS 95

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL 274
                  A+ ++  M+   V  D  ++  +L AC  GGL
Sbjct: 96  RNNHFQDALLMYSKMQLARVSPDSFTFPHLLKAC--GGL 132


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 169/446 (37%), Positives = 249/446 (55%), Gaps = 34/446 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK         +F NI  +++VSWN+M+  F Q     +AL+L +EM   N  PN +T+
Sbjct: 181 YAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITM 240

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL ACA+      G+ +H+ I R  +   L L+NA+ DMY KCG +  A+ +F+ +  
Sbjct: 241 VGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPE 300

Query: 121 RDEVSYNILIVGYS-------------------------------QTSDCSESLSLFSEM 149
           +D VS+  ++VGY+                               Q     E+L LF E+
Sbjct: 301 KDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHEL 360

Query: 150 RLLGM-KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           +L    K D V+ +  +SACA L A+  G  IH    ++ +  +  +  S++D Y + G 
Sbjct: 361 QLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGD 420

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +  A  +F  +  KD   W+ +I G  M G    AI LF  M+ED V  + V++  IL A
Sbjct: 421 LQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCA 480

Query: 269 CSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           CSH GLVE+G+ +F++M+    V P   HYACMVD+LGRAGL+E+AV+LI+ +P+ P A+
Sbjct: 481 CSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAAS 540

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           +WGALLGAC I+ NV L   A   L  L+P + G Y+LLSN+YA+AGKWD  S +R+LM+
Sbjct: 541 VWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMR 600

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVND 413
               KK PGCS ++    V +F+V D
Sbjct: 601 DVGLKKEPGCSSIEVDGIVHEFLVGD 626



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 182/376 (48%), Gaps = 46/376 (12%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN--EFPNSVTLTNVLPAC 68
           A  +F  I   N+ +WN ++  +A +    ++L +   M +H   +FP+  T   ++ A 
Sbjct: 88  AQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRM-LHQSPDFPDKFTFPFLIKAA 146

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYN 127
           +    L  GK  H  +I+  L  D+F+ N+L   YAKCG L L   VF NI  RD VS+N
Sbjct: 147 SELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWN 206

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            +I  + Q     E+L LF EM    +K + ++ +G +SACA  +  + G+ +H    R 
Sbjct: 207 SMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERN 266

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            +   L ++N++LD YT+ G ++ A ++FD +P KD  SW T+++GY  +GE D A  +F
Sbjct: 267 RIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIF 326

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGR 306
           +AM       D  ++ A+++A    G  ++  + F E+Q + + KP              
Sbjct: 327 DAMPNQ----DIAAWNALISAYEQCGKPKEALELFHELQLSKTAKP-------------- 368

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ---HCGYY 363
                D V L+               L AC   G ++LG W   H+++ K     +C   
Sbjct: 369 -----DEVTLVST-------------LSACAQLGAMDLGGWI--HVYIKKQGMKLNCHLT 408

Query: 364 ILLSNMYAEAGKWDEA 379
             L +MY + G   +A
Sbjct: 409 TSLIDMYCKCGDLQKA 424



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 183/375 (48%), Gaps = 33/375 (8%)

Query: 40  LKALQLVREMPIHNEFPNSVTLTN-----------VLPACARGHFLRPGKEIHARIIRKG 88
           L +L     +P  N  PNS+TL N           ++  C+    L   K+IHA+++R G
Sbjct: 8   LVSLPRSHSLPTPN--PNSITLNNDRYFANHPTLSLIDQCSETKQL---KQIHAQMLRTG 62

Query: 89  LNFDLFLTNALTDMYA--KCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSL 145
           L FD F  + L    A      L+ AQ VF+ I   +  ++N LI  Y+ +S+  +SL +
Sbjct: 63  LFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLI 122

Query: 146 FSEMRLLGMKHDV---VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
           F  +R+L    D     +F   I A + L  +  GK  HG+ I+  L + +F+ NS++ F
Sbjct: 123 F--LRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHF 180

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y + G + L  ++F  +P +D  SWN++I  +   G  + A+ LF+ M    V  + ++ 
Sbjct: 181 YAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITM 240

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
           + +L+AC+     E G+     ++ + +  +      M+D+  + G +EDA +L   +P 
Sbjct: 241 VGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMP- 299

Query: 323 EPDANIWGALLGACRIYGNVELGAW-AAEHLFMLKP-QHCGYYILLSNMYAEAGKWDEAS 380
           E D   W  +L      G  ++G + AA+ +F   P Q    +  L + Y + GK  EA 
Sbjct: 300 EKDIVSWTTML-----VGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEAL 354

Query: 381 KV-RELMKSREAKKN 394
           ++  EL  S+ AK +
Sbjct: 355 ELFHELQLSKTAKPD 369



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +FH++  K++  W+AM+A  A +     A+ L  +M      PN+VT
Sbjct: 414 MYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVT 473

Query: 61  LTNVLPACARGHFLRPGK 78
            TN+L AC+    +  G+
Sbjct: 474 FTNILCACSHVGLVEEGR 491


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 158/416 (37%), Positives = 258/416 (62%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK         +F  + +K++VSW  ++A  AQN    +AL+L RE+ +     + + 
Sbjct: 427 MYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMM 486

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++++L AC+    +   KEIH+ IIRKGL+ DL L N + D+Y +CG ++ A  +F  I 
Sbjct: 487 ISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIE 545

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           F+D VS+  +I  Y      +E+L LF  M+  G++ D +S +  +SA A+L+A+K+GKE
Sbjct: 546 FKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKE 605

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  IRK       +A++++D Y R G ++ +  +F+ +  KD   W ++I  YGM G 
Sbjct: 606 IHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGC 665

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AI+LF  M ++ +  D ++++A+L ACSH GL+ +G+++ + M+ +  ++P   HYA
Sbjct: 666 GRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYA 725

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGRA  +E+A + +K + VEP A +W ALLGAC+I+ N ELG  AA+ L  + P+
Sbjct: 726 CLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPE 785

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G Y+L+SN+Y+   +W +   VR  MK+   KKNPGCSW++  ++V  F+  D+
Sbjct: 786 NPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDK 841



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 181/354 (51%), Gaps = 5/354 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MY K +    A  LF  + EK ++VSWN+M++ ++ N   ++AL+L  EM   +  PN+ 
Sbjct: 224 MYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTY 283

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T    L AC    F++ G  IHA +++     ++F+ NAL  MYA+ G +  A N+F N+
Sbjct: 284 TFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNM 343

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              D +S+N ++ G+ Q     E+L  + EMR  G K D+V+ +  I+A A       G 
Sbjct: 344 DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGM 403

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH   ++  L + L V NS++D Y +   +   + IFD +P KD  SW T+I G+   G
Sbjct: 404 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG 463

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
               A+ LF  ++ +G+  D +   +IL ACS   L+   K+    +    +    +   
Sbjct: 464 SHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNG 523

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
            +VD+ G  G ++ A ++ + +  + D   W +++ +C ++  +   A    HL
Sbjct: 524 -IVDVYGECGNVDYAARMFELIEFK-DVVSWTSMI-SCYVHNGLANEALELFHL 574



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/275 (32%), Positives = 143/275 (52%), Gaps = 2/275 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  LF  +  K I +WNAM+  +  N   L +L+L REM +     ++ T
Sbjct: 123 MYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACT 182

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--I 118
              +L AC      R G E+H   I++G    +F+ N++  MY KC  LN A+ +F+   
Sbjct: 183 FPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMP 242

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              D VS+N +I  YS      E+L LF EM+   +  +  +F+ A+ AC + + IKQG 
Sbjct: 243 EKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGM 302

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH   ++   + ++FVAN+++  Y R G++  A  IF  +   D+ SWN+++ G+   G
Sbjct: 303 FIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNG 362

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
               A+  +  MR+ G   D V+ I+I+ A +  G
Sbjct: 363 LYHEALQFYHEMRDAGQKPDLVAVISIIAASARSG 397



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 146/288 (50%), Gaps = 8/288 (2%)

Query: 53  NEFPNSVTL----TNVLPACARGHFLRPGKEIHARIIRKGLNFD-LFLTNALTDMYAKCG 107
           N+ P+  +L    ++VL  C     L  G+++HA +I     F+ +FL+  L  MY KCG
Sbjct: 69  NQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCG 128

Query: 108 CLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS 166
           CL  A+ +F+ +  +   ++N +I  Y    +   SL L+ EMR+ G+  D  +F   + 
Sbjct: 129 CLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILK 188

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSA 225
           AC  L   + G E+HG+ I++   + +FVANSI+  YT+   ++ A ++FD +P K D  
Sbjct: 189 ACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVV 248

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           SWN++I  Y   G+   A+ LF  M++  +  +  +++A L AC     +++G      +
Sbjct: 249 SWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATV 308

Query: 286 QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
              S          ++ +  R G M +A  +  N+  + D   W ++L
Sbjct: 309 LKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD-DWDTISWNSML 355



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 113/264 (42%), Gaps = 45/264 (17%)

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDC 218
           ++   +  C +  A+ +G+++H   I  + L   +F++  ++  Y + G +  A K+FD 
Sbjct: 80  AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 139

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P K   +WN +I  Y   GE   ++ L+  MR  G+  D  ++  IL AC   GL+ K 
Sbjct: 140 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC---GLL-KD 195

Query: 279 KKYFDEMQADSVKPTEMHYA----CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
           ++Y  E+   ++K   +        +V +  +   +  A +L   +P + D   W +++ 
Sbjct: 196 RRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMIS 255

Query: 335 ----------ACRIYGNVELGAWAAE-HLFMLKPQHC-------------------GYYI 364
                     A R++G ++  + A   + F+   Q C                    YYI
Sbjct: 256 AYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI 315

Query: 365 ------LLSNMYAEAGKWDEASKV 382
                  L  MYA  GK  EA+ +
Sbjct: 316 NVFVANALIAMYARFGKMGEAANI 339


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  300 bits (769), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 152/414 (36%), Positives = 244/414 (58%), Gaps = 2/414 (0%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           K+     A  +F  I++ ++ +WN +++ + Q  L    ++L R M   N  P+  TL  
Sbjct: 364 KARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAV 423

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRD 122
           +L  C+R   L  GK++H+  ++  L+ D+F+ + L DMY+KCG + +AQ +FN+ + RD
Sbjct: 424 ILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERD 483

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            V +N +I G +  S   E+   F +MR  GM     S+   I++CA L++I QG++IH 
Sbjct: 484 VVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIHA 543

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             ++     +++V +S++D Y + G +D A   F+C+ VK+  +WN +I GY   G  + 
Sbjct: 544 QVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGEK 603

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMV 301
           A+ LFE M       D V++IA+LT CSH GLV++   YF+ M+++  ++P   HY C++
Sbjct: 604 AVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAIAYFNSMESNYGIRPLVEHYTCLI 663

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361
           D LGRAG   + V +I  +P + DA +W  LL AC ++ N ELG +AA+HLF L P++  
Sbjct: 664 DALGRAGRFAEVVAVIDKMPYKDDAILWEVLLAACVVHHNAELGEFAAKHLFRLDPKNPS 723

Query: 362 YYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
            Y+LLSN+YA  G+  +AS VR LM SR   K  G SWV  +D  + F+V D +
Sbjct: 724 PYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVNHKDGARAFMVADDL 777



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 199/399 (49%), Gaps = 25/399 (6%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           A A  L   + ++N VSWN ++A  A++    +AL++ R M      P + TL +VL AC
Sbjct: 93  AAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSAC 152

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
                L  G+  H   ++ GL+ + F+ N L  MY KCG +  A  +F+ +S  +EVS+ 
Sbjct: 153 GAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFT 212

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA-------NLA-AIKQGKE 179
            ++ G +Q+    ++L LF+ M    ++ D V+    + ACA       N+A AI+  + 
Sbjct: 213 AMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQS 272

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH + +RK   +   V NS++D Y +  ++D A K+F+ +      SWN L+ GYG LG 
Sbjct: 273 IHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGC 332

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ + + M+E G   + V+Y  +L +C     V   +  FD++     KP+   +  
Sbjct: 333 YERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIS----KPSVTTWNT 388

Query: 300 MVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGAW---AAEHLF 353
           ++   G+  L +D ++L + +    V+PD      +L  C   G +ELG     A+  L 
Sbjct: 389 LLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLL 448

Query: 354 MLKPQHCGYYIL--LSNMYAEAGKWDEASKVRELMKSRE 390
           +    H   ++   L +MY++ G+   A  +  +M  R+
Sbjct: 449 L----HNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERD 483



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 129/240 (53%), Gaps = 15/240 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  +   A  +F+ + E+++V WN+M++  A + L  +A    ++M  +  FP   +
Sbjct: 462 MYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESS 521

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +++ +CAR   +  G++IHA++++ G + ++++ ++L DMYAKCG ++ A+  FN + 
Sbjct: 522 YASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMI 581

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
            ++ V++N +I GY+Q     +++ LF  M     K D V+F+  ++ C++   + +   
Sbjct: 582 VKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAIA 641

Query: 178 -----KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
                +  +G+   + L  H      ++D   R+GR      + D +P KD A  W  L+
Sbjct: 642 YFNSMESNYGI---RPLVEHY---TCLIDALGRAGRFAEVVAVIDKMPYKDDAILWEVLL 695



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 121/254 (47%), Gaps = 10/254 (3%)

Query: 77  GKEIHA-RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYS 134
           G   HA R  R     +++  NA      + G L  A+++   +  R+ VS+N +I   +
Sbjct: 59  GLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVA 118

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
           ++    E+L ++  M   G+     +    +SAC  +AA+  G+  HG+ ++  L  + F
Sbjct: 119 RSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQF 178

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           V N +L  YT+ G +  A ++FD +   +  S+  ++ G    G VD A+ LF  M    
Sbjct: 179 VENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSA 238

Query: 255 VGYDPVSYIAILTACSHGGL----VEKGKKYFDEMQADSVKP---TEMHYA-CMVDLLGR 306
           +  DPV+  ++L AC+        V +  +    + A  V+    ++ H    ++D+  +
Sbjct: 239 IRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAK 298

Query: 307 AGLMEDAVKLIKNL 320
              M++A+K+ +++
Sbjct: 299 GMKMDEAMKVFESM 312


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  300 bits (769), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 155/415 (37%), Positives = 247/415 (59%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YA S+    A  LF  I ++N+  WN ++  +A N     A+ L  +M  +   P++ T
Sbjct: 91  LYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFT 150

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL AC+    +  G+ IH  +I+ G   DLF+  AL DMYAKCGC+  A  VF+ I 
Sbjct: 151 LPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIV 210

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V +N ++  Y+Q     ES+SL  EM   G++    + +  IS+ A++A +  G+E
Sbjct: 211 VRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGRE 270

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG   R    ++  V  +++D Y + G + +A  +F+ L  K   SWN +I GY M G 
Sbjct: 271 IHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGL 330

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++LF+ MR++    D ++++ +L ACS G L+++G+  ++ M  D  + PT  HY 
Sbjct: 331 AVGALDLFDKMRKEDRP-DHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYT 389

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLG  G +++A  LI+N+ V+PD+ +WGALL +C+I+GNVEL   A E L  L+P 
Sbjct: 390 CMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPD 449

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             G Y++L+NMYA++GKW+   K+R++M  +  KKN  CSW++ +++V  F+  D
Sbjct: 450 DSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGD 504



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 143/293 (48%), Gaps = 6/293 (2%)

Query: 53  NEFPNSVT----LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
           + FP   T     T++L +C     L PGK++HA+    G+ ++  L   L  +YA    
Sbjct: 38  DSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNS 97

Query: 109 LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
           L  A+N+F+ I  ++   +N+LI GY+       ++ L+ +M   G++ D  +    + A
Sbjct: 98  LLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKA 157

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C+ L+AI +G+ IH   I+      LFV  +++D Y + G +  A ++FD + V+D+  W
Sbjct: 158 CSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLW 217

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           N+++  Y   G  D +I+L   M  +GV     + + ++++ +    +  G++       
Sbjct: 218 NSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWR 277

Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
              +  +     ++D+  + G ++ A+ L + L  E     W A++    ++G
Sbjct: 278 HGFQSNDKVKTALIDMYAKCGSVKVALALFERLR-EKRVVSWNAIITGYAMHG 329


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  300 bits (769), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 148/417 (35%), Positives = 252/417 (60%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIA--EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           +YAK  R   A  +F  +   E+ IVSW A+V+ +AQN   ++AL++  +M   +  P+ 
Sbjct: 163 LYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDW 222

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           V L +VL A      L+ G+ IHA +++ GL  +  L  +L  MYAKCG +  A+ +F+ 
Sbjct: 223 VALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDK 282

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +   + + +N +I GY++     E++ +F EM    ++ D +S   AISACA + +++Q 
Sbjct: 283 MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA 342

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + ++    R      +F++++++D + + G ++ A  +FD    +D   W+ +I+GYG+ 
Sbjct: 343 RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLH 402

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G    AI+L+ AM   GV  + V+++ +L AC+H G+V +G  +F+ M    + P + HY
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHY 462

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           AC++DLLGRAG ++ A ++IK +PV+P   +WGALL AC+ + +VELG +AA+ LF + P
Sbjct: 463 ACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDP 522

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            + G+Y+ LSN+YA A  WD  ++VR  MK +   K+ GCSWV+ R  ++ F V D+
Sbjct: 523 SNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDK 579



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 170/333 (51%), Gaps = 4/333 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F ++    I  WNA++  +++N     AL +   M +    P+S T  ++L AC+ 
Sbjct: 72  ARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSG 131

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---ISFRDEVSYN 127
              L+ G+ +HA++ R G + D+F+ N L  +YAKC  L  A+ VF    +  R  VS+ 
Sbjct: 132 LSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWT 191

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            ++  Y+Q  +  E+L +FS+MR + +K D V+ +  ++A   L  +KQG+ IH   ++ 
Sbjct: 192 AIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKM 251

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            L     +  S+   Y + G++  A  +FD +   +   WN +I GY   G    AI++F
Sbjct: 252 GLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMF 311

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
             M    V  D +S  + ++AC+  G +E+ +  ++ +     +      + ++D+  + 
Sbjct: 312 HEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKC 371

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           G +E A +L+ +  ++ D  +W A++    ++G
Sbjct: 372 GSVEGA-RLVFDRTLDRDVVVWSAMIVGYGLHG 403



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 137/307 (44%), Gaps = 45/307 (14%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEV-SYNILIVGYSQT 136
           K+IHAR++  GL F  FL   L    +  G +  A+ VF+   R ++  +N +I GYS+ 
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
           +   ++L ++S M+L  +  D  +F   + AC+ L+ ++ G+ +H    R      +FV 
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSA--SWNTLILGYGMLGEVDTAINLFEAMREDG 254
           N ++  Y +  R+  A  +F+ LP+ +    SW  ++  Y   GE   A+ +F  MR+  
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217

Query: 255 VGYDPVSYIAILTACS-----------HGGLVEKG------------------------K 279
           V  D V+ +++L A +           H  +V+ G                        K
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK---NLPVEPDANIWGALLGAC 336
             FD+M++    P  + +  M+    + G   +A+ +     N  V PD     + + AC
Sbjct: 278 ILFDKMKS----PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISAC 333

Query: 337 RIYGNVE 343
              G++E
Sbjct: 334 AQVGSLE 340



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 46/104 (44%)

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           Q K+IH   +   L    F+   ++   +  G I  A ++FD LP      WN +I GY 
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
                  A+ ++  M+   V  D  ++  +L ACS    ++ G+
Sbjct: 96  RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  300 bits (769), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 162/458 (35%), Positives = 253/458 (55%), Gaps = 39/458 (8%)

Query: 2   YAKSSRPAEASYLFHNI----AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           +A+  R  E   LF+       E N+VSWN M++ F ++   L A+ + + M +    P+
Sbjct: 150 FARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPD 209

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             ++++VLPA         G +IH  +I++GL  D F+ +AL DMY KC C +    VFN
Sbjct: 210 GTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFN 269

Query: 118 ------------------------------ISFR----DEVSYNILIVGYSQTSDCSESL 143
                                           F+    + VS+  +I   SQ     E+L
Sbjct: 270 EMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEAL 329

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203
            LF EM++ G+K + V+    + AC N+AA+  GK  H  ++R  +   ++V ++++D Y
Sbjct: 330 ELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMY 389

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
            + GR+  +   FD +P ++  SWN+L+ GY M G+   AIN+FE M+  G   D VS+ 
Sbjct: 390 AKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFT 449

Query: 264 AILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
            +L+AC+ GGL E+G  YFD M  +  V+    HY+CMV LLGR+G +E+A  +IK +P 
Sbjct: 450 CVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPF 509

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382
           EPD+ +WGALL +CR++  V+LG  AA+ +F L+P++ G YILLSN+YA    W E   V
Sbjct: 510 EPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMV 569

Query: 383 RELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFTP 420
           R++M+SR  KKNPG SW++ +++V   +  D      P
Sbjct: 570 RDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMP 607



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 127/286 (44%), Gaps = 38/286 (13%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P+S  L  V+  CA    L+ GK++H   +  GL  D  + ++L  MY +   L  A+NV
Sbjct: 72  PDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNV 131

Query: 116 FN------------------------------ISFRD------EVSYNILIVGYSQTSDC 139
           F+                                 RD       VS+N +I G++++   
Sbjct: 132 FDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSY 191

Query: 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
            +++ +F  M L G+K D  S    + A  +L     G +IH   I++ L    FV +++
Sbjct: 192 LDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSAL 251

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
           +D Y +       + +F+ +   D  + N L+ G    G VD A+ +F+  +  G+  + 
Sbjct: 252 IDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFK--GMDLNV 309

Query: 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           VS+ +++ +CS  G   +  + F EMQ + VKP  +   C++   G
Sbjct: 310 VSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACG 355



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 69/160 (43%)

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           +S+ +     + +FS M   G+  D       I  CA L+A++ GK++H   +   L   
Sbjct: 49  FSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLD 108

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
             V +S+L  Y +   +  A  +FD LP     + + LI  +   G V     LF   R+
Sbjct: 109 SVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRD 168

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
            GV  + VS+  +++  +  G        F  M  + +KP
Sbjct: 169 LGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKP 208



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R   +   F  +  +N+VSWN+++A +A +    +A+ +   M    + P+ V+
Sbjct: 388 MYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVS 447

Query: 61  LTNVLPACARGHFLRPG 77
            T VL AC +G     G
Sbjct: 448 FTCVLSACTQGGLTEEG 464


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  300 bits (769), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 156/438 (35%), Positives = 257/438 (58%), Gaps = 25/438 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           MY    +      +F ++ ++ I  WNAM+A +AQ+  + KAL L  EM      + N+ 
Sbjct: 261 MYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNAT 320

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T+++++PA  R   +   + IH  +I++GL  + +L NAL DMY++ G +  ++ +F+ +
Sbjct: 321 TMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSM 380

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEM----------------RLLGMKHDVVSFM 162
             RD VS+N +I  Y      S++L L  EM                + +  K + ++ M
Sbjct: 381 EDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLM 440

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
             +  CA+L+A+ +GKEIH   IR  L + + V ++++D Y + G ++LA ++FD +P++
Sbjct: 441 TVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIR 500

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDG-----VGYDPVSYIAILTACSHGGLVEK 277
           +  +WN +I+ YGM G+   ++ LFE M  +G     V    V++IA+  +CSH G+V++
Sbjct: 501 NVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDE 560

Query: 278 GKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD-ANIWGALLGA 335
           G   F +M+ +  ++P   HYAC+VDL+GRAG +E+A  L+  +P   D    W +LLGA
Sbjct: 561 GLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGA 620

Query: 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395
           CRIY N+E+G  AAE+L  L+P    +Y+LLSN+Y+ AG WD+A  +R  MK+   KK P
Sbjct: 621 CRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEP 680

Query: 396 GCSWVQTRDEVQDFVVND 413
           GCSW++  DEV  F+  D
Sbjct: 681 GCSWIEYGDEVHKFLAGD 698



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 181/359 (50%), Gaps = 20/359 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R  +A  L     ++++V+WN+M+++F+QN   ++AL  +R M +    P+ VT
Sbjct: 159 MYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVT 218

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
             +VLPAC+    LR GKEIHA  +R   +  + F+ +AL DMY  CG +   + VF+  
Sbjct: 219 FASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSV 278

Query: 120 FRDEVS-YNILIVGYSQTSDCSESLSLFSEMR-LLGMKHDVVSFMGAISACANLAAIKQG 177
              ++  +N +I GY+Q+    ++L LF EM    G+  +  +    + A      I + 
Sbjct: 279 LDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRK 338

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + IHG  I++ L T+ ++ N+++D Y+R G I  + +IFD +  +D  SWNT+I  Y + 
Sbjct: 339 EGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVIC 398

Query: 238 GEVDTAINLFEAMR--------------EDGVGYDP--VSYIAILTACSHGGLVEKGKKY 281
           G    A+ L   M+              E  V + P  ++ + +L  C+    + KGK+ 
Sbjct: 399 GRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEI 458

Query: 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
                 + +       + +VD+  + G +  A ++   +P+  +   W  ++ A  ++G
Sbjct: 459 HAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIR-NVITWNVIIMAYGMHG 516



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 133/255 (52%), Gaps = 6/255 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  I E++ VSWN++++   +      A++  R M +    P+S T
Sbjct: 56  MYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFT 115

Query: 61  LTNVLPACA---RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           L ++  AC+   +   L  GK+IH    RKG ++  F  NAL  MYAK G L+ A+++  
Sbjct: 116 LVSMALACSNLRKRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLV 174

Query: 118 I-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
           +   RD V++N +I  +SQ     E+L     M L G+K D V+F   + AC++L  ++ 
Sbjct: 175 LFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRT 234

Query: 177 GKEIHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           GKEIH   +R   +  + FV ++++D Y   G+++    +FD +  +    WN +I GY 
Sbjct: 235 GKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYA 294

Query: 236 MLGEVDTAINLFEAM 250
                + A+ LF  M
Sbjct: 295 QSEHDEKALMLFIEM 309



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 137/287 (47%), Gaps = 9/287 (3%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQ 113
           P++     VL A A    L  GK+IHA + + G      + + N L +MY KCG L  A 
Sbjct: 8   PDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAY 67

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
            VF+ I+ RD+VS+N +I    +  +   ++  F  M + G +    + +    AC+NL 
Sbjct: 68  KVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLR 127

Query: 173 ---AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
               +  GK+IHG   RK  H   F  N+++  Y + GR+D A  +      +D  +WN+
Sbjct: 128 KRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNS 186

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK-YFDEMQAD 288
           +I  +        A+     M  +GV  D V++ ++L ACSH  L+  GK+ +   ++ D
Sbjct: 187 MISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTD 246

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            V       + +VD+    G +E   +L+ +  ++    +W A++  
Sbjct: 247 DVIENSFVGSALVDMYCNCGQVESG-RLVFDSVLDRKIGLWNAMIAG 292



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL--HTHLFVANSILDFYTRSGRID 210
           G   D  +F   + A A +  +  GK+IH    +      + + + N++++ Y + G + 
Sbjct: 5   GFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLG 64

Query: 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
            A K+FD +  +D  SWN++I       E + AI  F  M  +G      + +++  ACS
Sbjct: 65  DAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACS 124

Query: 271 H 271
           +
Sbjct: 125 N 125


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  300 bits (769), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 166/446 (37%), Positives = 243/446 (54%), Gaps = 34/446 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++    EA  LF  +  KN  SW AM+A F QN    +AL+L+ E+      P+  + 
Sbjct: 499 YTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSF 558

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
           T+ L ACA    +  G+ IH+  I+ G  F+ ++ N L  MYAKCG +    +VF  I  
Sbjct: 559 TSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRV 618

Query: 121 RDEVSYNILIVG-------------------------------YSQTSDCSESLSLFSEM 149
           +D VS+N LI G                               Y Q      +L LF +M
Sbjct: 619 KDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDM 678

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
              G+K + ++    +SAC NL AIK G++ H +  +    T LFV NS++  Y + G  
Sbjct: 679 LARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYE 738

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           D    +F+ +P  D  +WN +++G    G    AI +FE M  +G+  D +S++ +L AC
Sbjct: 739 D-GFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCAC 797

Query: 270 SHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           SH GLV++G  +F+ M Q   + P   HY CMVDLLGRAG + +A  LI+N+PV+PD+ I
Sbjct: 798 SHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVI 857

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
           W ALLGACRI+ NVELG   AE LF +       Y+LLSN++A  G WD+ +++R+LMK 
Sbjct: 858 WEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKD 917

Query: 389 REAKKNPGCSWVQTRDEVQDFVVNDR 414
           +   K PG SW+Q ++++  FV  DR
Sbjct: 918 QGLTKEPGISWIQVKNKLHCFVTGDR 943



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 158/335 (47%), Gaps = 49/335 (14%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK  R  EA  +F ++ E+N+VSWNAM++ + QN     A +L  EMP  N        
Sbjct: 243 YAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKN-------- 294

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
                                          +   N++   Y  C  ++ A+ +F+ +  
Sbjct: 295 -------------------------------VASWNSVVTGYCHCYRMSEARELFDQMPE 323

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+ ++I GY   SD  E+  +F +M     + D   F+  +SA   L  ++    +
Sbjct: 324 RNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSL 383

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
             + I+      + V ++IL+ YTR+G +DLA   F+ +P ++  SW T+I  +   G +
Sbjct: 384 RPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRL 443

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           D AI L+E + E  V     +  A++TA +  G ++K +  FDE+    + P  + +  +
Sbjct: 444 DDAIQLYERVPEQTVA----TKTAMMTAYAQVGRIQKARLIFDEI----LNPNVVAWNAI 495

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +    + G++++A  L + +PV+  A+ W A++  
Sbjct: 496 IAGYTQNGMLKEAKDLFQKMPVKNSAS-WAAMIAG 529



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 154/317 (48%), Gaps = 19/317 (5%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQ-NRLELKALQLVREMPIHNEFPNSVT 60
           Y ++     A + F  + E+N  SW  M+A FAQ  RL+  A+QL   +P         T
Sbjct: 406 YTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLD-DAIQLYERVPEQT----VAT 460

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T ++ A A+   ++  + I   I    LN ++   NA+   Y + G L  A+++F  + 
Sbjct: 461 KTAMMTAYAQVGRIQKARLIFDEI----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMP 516

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++  S+  +I G+ Q  +  E+L L  E+   G      SF  A+SACAN+  ++ G+ 
Sbjct: 517 VKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRV 576

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH + I+     + +V N ++  Y + G ++  + +F  + VKD+ SWN+LI G      
Sbjct: 577 IHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYM 636

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +D A  +FE M +     D VS+ AI++A    G  E     F +M A  +KP ++    
Sbjct: 637 LDDARVVFEKMPKR----DVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTS 692

Query: 300 MVDLLGRAGLMEDAVKL 316
           ++   G  G    A+KL
Sbjct: 693 LLSACGNLG----AIKL 705



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 127/264 (48%), Gaps = 33/264 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPI--------- 51
           MYAK     + S++F  I  K+ VSWN++++  ++N +   A  +  +MP          
Sbjct: 599 MYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAI 658

Query: 52  --------HNEF--------------PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
                   H E               PN +T+T++L AC     ++ G++ HA I + G 
Sbjct: 659 ISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGF 718

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
           +  LF+ N+L  MY KCG  +       +   D +++N ++VG +Q     E++ +F +M
Sbjct: 719 DTFLFVGNSLITMYFKCGYEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQM 778

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQG-KEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
            + G+  D +SF+G + AC++   + +G    + +T +  +   ++    ++D   R+G 
Sbjct: 779 EVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGY 838

Query: 209 IDLANKIFDCLPVK-DSASWNTLI 231
           +  A  + + +PVK DS  W  L+
Sbjct: 839 LSEAEALIENMPVKPDSVIWEALL 862



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 97/199 (48%), Gaps = 17/199 (8%)

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
           G   ++   THLF  N+ +    R GR++ A ++F+ +  +D  SWN++I GY   G+VD
Sbjct: 160 GAKNKETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVD 219

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            A  LF+A     VG +  ++  +LT  +  G +E+ ++ F+ M   +V    + +  M+
Sbjct: 220 EARLLFDAF----VGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNV----VSWNAMI 271

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALL-GACRIYGNVELGAWAAEHLFMLKPQH- 359
               + G +++A KL   +P E +   W +++ G C  Y   E     A  LF   P+  
Sbjct: 272 SGYVQNGDLKNARKLFDEMP-EKNVASWNSVVTGYCHCYRMSE-----ARELFDQMPERN 325

Query: 360 -CGYYILLSNMYAEAGKWD 377
              + +++S     +  W+
Sbjct: 326 SVSWMVMISGYVHISDYWE 344


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  300 bits (769), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 165/415 (39%), Positives = 243/415 (58%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A  +F      ++    AM++ +  + L + A+   R +       NS+T
Sbjct: 358 VYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLT 417

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VLPACA    L+PGKE+H  I++K L   + + +A+TDMYAKCG L+LA   F  +S
Sbjct: 418 MASVLPACAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMS 477

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V +N +I  +SQ      ++ LF +M + G K D VS   A+SA ANL A+  GKE
Sbjct: 478 DRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKE 537

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  IR    +  FVA++++D Y++ G + LA  +F+ +  K+  SWN++I  YG  G 
Sbjct: 538 MHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGC 597

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HYA 298
               ++L+  M   G+  D V+++ I++AC H GLV++G  YF  M  +      M HYA
Sbjct: 598 PRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYA 657

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDL GRAG + +A   IK++P  PDA +WG LLGACR++GNVEL   A+ HL  L P+
Sbjct: 658 CMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPK 717

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + GYY+LLSN++A+AG+W    KVR LMK +  +K PG SW+        F   D
Sbjct: 718 NSGYYVLLSNVHADAGEWASVLKVRSLMKEKGVQKIPGYSWIDVNGGTHMFSAAD 772



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 172/346 (49%), Gaps = 4/346 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YA +    +A  +F  +  ++ + WN M+  + ++     A+    EM       NSVT
Sbjct: 156 LYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVT 215

Query: 61  LTNVLPACA-RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
            T +L  CA RG+F   G ++H  +I  G  FD  + N L  MY+KCG L  A+ +FN +
Sbjct: 216 YTCILSICATRGNFC-AGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTM 274

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              D V++N LI GY Q     E+  LF+ M   G+K D V+F   + +     +++  K
Sbjct: 275 PQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCK 334

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+H   +R  +   +++ ++++D Y + G +++A KIF    + D A    +I GY + G
Sbjct: 335 EVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHG 394

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
               AIN F  + ++G+  + ++  ++L AC+    ++ GK+    +    ++      +
Sbjct: 395 LNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVNVGS 454

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344
            + D+  + G ++ A +  + +  + D+  W +++ +    G  E+
Sbjct: 455 AITDMYAKCGRLDLAYEFFRRMS-DRDSVCWNSMISSFSQNGKPEI 499



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 145/320 (45%), Gaps = 1/320 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y    R  +A  LF  +  +  + WN M+           AL    +M   N  P+  T
Sbjct: 55  LYVLCGRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYT 114

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V+ AC   + +     +H      G + DLF  +AL  +YA  G +  A+ VF+ + 
Sbjct: 115 FPYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELP 174

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD + +N+++ GY ++ D   ++  F EMR      + V++   +S CA       G +
Sbjct: 175 LRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQ 234

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+ I         VAN+++  Y++ G +  A K+F+ +P  D+ +WN LI GY   G 
Sbjct: 235 LHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGF 294

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D A  LF AM   GV  D V++ + L +    G +   K+    +    V       + 
Sbjct: 295 TDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSA 354

Query: 300 MVDLLGRAGLMEDAVKLIKN 319
           ++D+  + G +E A K+ + 
Sbjct: 355 LIDVYFKGGDVEMARKIFQQ 374



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 119/279 (42%), Gaps = 2/279 (0%)

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV-F 116
           +  L ++  AC+    ++  +++H ++I  G+      ++ +  +Y  CG    A N+ F
Sbjct: 11  TTQLESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFF 70

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  R  + +N +I G         +L  + +M    +  D  +F   I AC  L  +  
Sbjct: 71  ELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPL 130

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
              +H        H  LF  ++++  Y  +G I  A ++FD LP++D+  WN ++ GY  
Sbjct: 131 CMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVK 190

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G+ D AI  F  MR      + V+Y  IL+ C+  G    G +    +     +     
Sbjct: 191 SGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQV 250

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
              +V +  + G +  A KL   +P + D   W  L+  
Sbjct: 251 ANTLVAMYSKCGNLLYARKLFNTMP-QTDTVTWNGLIAG 288


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  300 bits (769), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 153/423 (36%), Positives = 253/423 (59%), Gaps = 16/423 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A  +F  I  K++VSWNAM++ + +     +AL+L +EM   N  P+  T+
Sbjct: 139 YASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTM 198

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
             V+ A AR   +  G+++H+ I   G   +L + NAL D Y+KCG +  A  +F  +S+
Sbjct: 199 VTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSY 258

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D +S+NILI GY+  +   E+L LF EM   G   + V+ +  + ACA+L AI  G+ I
Sbjct: 259 KDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWI 318

Query: 181 H--------GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           H        GVT    L T      S++D Y++ G I+ A+++F+ +  K   +WN +I 
Sbjct: 319 HVYIDKRLKGVTNASSLRT------SLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIF 372

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVK 291
           G+ M G  + A ++F  MR++ +  D ++++ +L+ACSH G+++ G+  F  M  +  + 
Sbjct: 373 GFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKIT 432

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
           P   HY CM+DLLG +GL ++A ++I  + +EPD  IW +LL AC+++GNVELG   A++
Sbjct: 433 PKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQN 492

Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           LF ++P + G Y+LLSN+YA AG+W+E +++R L+  +  KK PGCS ++    V +F++
Sbjct: 493 LFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFII 552

Query: 412 NDR 414
            D+
Sbjct: 553 GDK 555



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 199/445 (44%), Gaps = 74/445 (16%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  I E N++ WN M    A +   + AL+L   M      PNS T   +L +CA+   
Sbjct: 19  VFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKA 78

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDM------------------------------- 102
            + G +IH  +++ G   DL++  +L  M                               
Sbjct: 79  SKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTG 138

Query: 103 YAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
           YA  G +  A+N+F+ I  +D VS+N +I GY +T +  E+L LF EM    ++ D  + 
Sbjct: 139 YASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTM 198

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           +  ISA A   +I+ G+++H         ++L + N+++DFY++ G ++ A  +F  L  
Sbjct: 199 VTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSY 258

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-- 279
           KD  SWN LI GY  L     A+ LF+ M   G   + V+ ++IL AC+H G ++ G+  
Sbjct: 259 KDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWI 318

Query: 280 -KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI-----KNLP------------ 321
             Y D+        + +  + ++D+  + G +E A ++      K+LP            
Sbjct: 319 HVYIDKRLKGVTNASSLRTS-LIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMH 377

Query: 322 -----------------VEPDANIWGALLGACRIYGNVELGAW---AAEHLFMLKPQHCG 361
                            ++PD   +  LL AC   G ++LG     +  H + + P+   
Sbjct: 378 GRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPK-LE 436

Query: 362 YYILLSNMYAEAGKWDEASKVRELM 386
           +Y  + ++   +G + EA ++   M
Sbjct: 437 HYGCMIDLLGHSGLFKEAEEMISTM 461



 Score = 42.0 bits (97), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 39/80 (48%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F+++  K++ +WNAM+  FA +     A  +   M  +   P+ +T
Sbjct: 342 MYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDIT 401

Query: 61  LTNVLPACARGHFLRPGKEI 80
              +L AC+    L  G+ I
Sbjct: 402 FVGLLSACSHAGMLDLGRHI 421


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  300 bits (769), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 251/437 (57%), Gaps = 33/437 (7%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F     +++VSWN+++  + + R   +A+ + ++M   +  P+ VT+  V+ ACA+
Sbjct: 208 AHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQ 267

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
              L+ G+EIH  I   GLN  + L NAL DMY KCG L   + +F N+  +  VS+  +
Sbjct: 268 LESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTM 327

Query: 130 IVGYS-------------------------------QTSDCSESLSLFSEMRLLGMKHDV 158
           IVGY+                               Q +   E+L LF EM+   MK D 
Sbjct: 328 IVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDK 387

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
           V+ +  +SAC+ L A+  G   H    + +L   + +  +++D Y + G +  A ++F+ 
Sbjct: 388 VTMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNE 447

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P ++S +W  +I G  + G V+ AI  F  M + G+  D ++++ +LTAC HGGLVE+G
Sbjct: 448 MPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEG 507

Query: 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
           +KYFD+M++  ++ P   HY+CMV+LLGRAGL+E+A +LIK +P+E DA +WGAL  AC 
Sbjct: 508 RKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACG 567

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           I+ N+ +G  AA  L  L P   G Y+LL+NMY EAGKW+EA  +R++M  R  +K PG 
Sbjct: 568 IHRNLLIGERAASKLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGS 627

Query: 398 SWVQTRDEVQDFVVNDR 414
           S ++    + +F+V D+
Sbjct: 628 SSIEVNGIINEFIVRDK 644



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 190/415 (45%), Gaps = 45/415 (10%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACARGH 72
           + +N+   N+ SWNA++    ++    K L L + M       P++ T + +   CA   
Sbjct: 109 ILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLV 168

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNILIV 131
               G EI  ++++ G + D++L N +  M    G   LA  VF+    RD VS+N LI 
Sbjct: 169 LSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLIN 228

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           GY +     E++ ++ +M    +K D V+ +G +SACA L ++K G+EIH       L+ 
Sbjct: 229 GYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNL 288

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            + + N+++D Y + G ++    +FD +  K   SW T+I+GY   G +D A  LF  M 
Sbjct: 289 KISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMP 348

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMH--YAC------- 299
           E  V    V++ A++ +C    L  +  + F EMQ  ++KP   T +H   AC       
Sbjct: 349 EKNV----VAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALD 404

Query: 300 -----------------------MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
                                  ++D+  + G M  A+++   +P   ++  W A++G  
Sbjct: 405 TGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMP-RRNSLTWTAIIGGL 463

Query: 337 RIYGNVELGAWAAEHLF--MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
            +YGNV    +    +    L P    +  +L+      G  +E  K  + MKSR
Sbjct: 464 ALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTAC-CHGGLVEEGRKYFDQMKSR 517



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 128/270 (47%), Gaps = 34/270 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN------------------------ 36
           MY K         LF N+ +K +VSW  M+  +A+N                        
Sbjct: 299 MYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAM 358

Query: 37  -------RLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
                   L  +AL+L REM   N  P+ VT+ + L AC++   L  G   H  I +  L
Sbjct: 359 IGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNL 418

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
           + D+ L  AL DMYAKCG +  A  VFN +  R+ +++  +I G +   + ++++  FS+
Sbjct: 419 SLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSK 478

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKE-IHGVTIRKHLHTHLFVANSILDFYTRSG 207
           M   G+  D ++F+G ++AC +   +++G++    +  R +L       + +++   R+G
Sbjct: 479 MIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAG 538

Query: 208 RIDLANKIFDCLPVK-DSASWNTLILGYGM 236
            ++ A ++   +P++ D+  W  L    G+
Sbjct: 539 LLEEAEELIKTMPMEADAMVWGALFFACGI 568


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  300 bits (769), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 145/416 (34%), Positives = 245/416 (58%), Gaps = 1/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            Y+K+  P  +S +F     K+  +W++++++FAQN   + A+Q    M   N  P+   
Sbjct: 98  FYSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHI 157

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +   ACA       GK +H  +I+ G + D+F+ ++L DMYAKCG +  A+NVF+ + 
Sbjct: 158 FPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMP 217

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS++ +I GY+Q  +  E++ LF E  L G+  +  +    I  C +   ++ GK+
Sbjct: 218 HRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQ 277

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG+  +       FV +S++  Y++ G I+ A ++FD +P+K+   WN +++       
Sbjct: 278 IHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAH 337

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A +LF  M   G+  + ++++ +L ACSH GLVE+GKKYF  M+   ++P   HYA 
Sbjct: 338 TKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKKYEIEPGTQHYAS 397

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGRAG +++A+ +IK +P EP  ++WGA +  CRI+GN +L A+AA+ +F L    
Sbjct: 398 MVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVS 457

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
            G +++LSN YA AG++++A+K R++++ R  KK  G SW++  + V  F   DR 
Sbjct: 458 SGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRF 513



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 163/343 (47%), Gaps = 15/343 (4%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + ++L +  R   L  G++IHA II+ GL     + + L + Y+K     L+  VF  S 
Sbjct: 57  ICDLLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESE 116

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           R    +++ +I  ++Q  +   ++  F  M    +  D   F  A  ACA L     GK 
Sbjct: 117 RKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKS 176

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + I+      +FV +S++D Y + G I  A  +FD +P ++  SW+ +I GY  LGE
Sbjct: 177 VHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGE 236

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ LF+    +G+  +  +  +++  C    L+E GK+        S   +    + 
Sbjct: 237 HEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSS 296

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           ++ L  + GL+E A ++   +P++ +  +W A+L AC  + + +     A  LF  K ++
Sbjct: 297 LISLYSKCGLIEGAYRVFDEVPIK-NLGMWNAMLIACAQHAHTK----EAFDLFT-KMEN 350

Query: 360 CG----YYILLSNMYA--EAGKWDEASKVRELMKSREAKKNPG 396
            G    +   L  +YA   AG  +E  K   LMK  E +  PG
Sbjct: 351 AGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKKYEIE--PG 391


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 145/403 (35%), Positives = 243/403 (60%), Gaps = 2/403 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + E+++VSWN +V   A+     +AL LVR+M      P+S TL++VLP  A    
Sbjct: 127 VFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECAD 186

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVG 132
           ++ G E+H   +R G + D+F+ ++L DMYA C   + +  VF N+  RD + +N ++ G
Sbjct: 187 VKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAG 246

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
            +Q     E+L +F  M   G++   V+F   I  C NLA+++ GK++H   IR     +
Sbjct: 247 CAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDN 306

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +F+++S++D Y + G I +A+ IFD +   D  SW  +I+GY + G    A+ LFE M  
Sbjct: 307 VFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERMEL 366

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLME 311
                + ++++A+LTACSH GLV+KG KYF  M     + PT  H A + D+LGRAG ++
Sbjct: 367 GNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGELD 426

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371
           +A   I  + ++P A++W  LL ACR++ N  L    A+ +  L+P+  G +++LSNMY+
Sbjct: 427 EAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYS 486

Query: 372 EAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            +G+W+EA+ +R+ M+ +  KK+P CSW++ ++++  FV +DR
Sbjct: 487 ASGRWNEAAHLRKSMRKKGMKKDPACSWIEVKNKLHVFVAHDR 529



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 147/330 (44%), Gaps = 23/330 (6%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC----------- 108
           +L   L +CA       G  +HA  IR G   D F  NAL ++Y K  C           
Sbjct: 53  SLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSV 112

Query: 109 --------LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
                   L   + VF+ +  RD VS+N L++G ++     E+L L  +M   G + D  
Sbjct: 113 GGTGSSTALESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSF 172

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           +    +   A  A +K+G E+HG  +R      +FV +S++D Y    R D + K+FD L
Sbjct: 173 TLSSVLPIFAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNL 232

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
           PV+D   WN+++ G    G V+ A+ +F  M + GV   PV++ +++  C +   +  GK
Sbjct: 233 PVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGK 292

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
           +    +     +      + ++D+  + G +  A  +   +   PD   W A++    ++
Sbjct: 293 QLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRM-CSPDVVSWTAMIMGYALH 351

Query: 340 GNVELGAWAAEHLFM--LKPQHCGYYILLS 367
           G         E + +   KP H  +  +L+
Sbjct: 352 GPAREALVLFERMELGNAKPNHITFLAVLT 381



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 129/234 (55%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA  +R   +  +F N+  ++ + WN+++A  AQN    +AL + R M      P  VT
Sbjct: 215 MYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVT 274

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++++P C     LR GK++HA +IR G   ++F++++L DMY KCG +++A ++F+ + 
Sbjct: 275 FSSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMC 334

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
             D VS+  +I+GY+      E+L LF  M L   K + ++F+  ++AC++   + +G K
Sbjct: 335 SPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWK 394

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
               ++    +   L    ++ D   R+G +D A      + +K +AS W+TL+
Sbjct: 395 YFKSMSDHYGIVPTLEHCAALADILGRAGELDEAYNFISKMQIKPTASVWSTLL 448



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 93/224 (41%), Gaps = 22/224 (9%)

Query: 141 ESLSLFSEMRLLGMKHDVV--SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
           +++SLF  MR        V  S   A+ +CA L     G  +H + IR       F AN+
Sbjct: 32  DAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANA 91

Query: 199 ILDFYTR-------------------SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +L+ Y +                   S  ++   K+FD +  +D  SWNTL+LG    G 
Sbjct: 92  LLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFDEMIERDVVSWNTLVLGCAEEGR 151

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ L   M  +G   D  +  ++L   +    V++G +       +         + 
Sbjct: 152 HHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRGSEVHGFAVRNGFDNDVFVGSS 211

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           ++D+       + +VK+  NLPV  D  +W ++L  C   G+VE
Sbjct: 212 LIDMYANCTRTDYSVKVFDNLPVR-DPILWNSVLAGCAQNGSVE 254


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  300 bits (768), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 156/428 (36%), Positives = 256/428 (59%), Gaps = 20/428 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A  +F  I E+++VSWNAM+  + +N    +AL+L +EM   N  P+  TL
Sbjct: 140 YASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTL 199

Query: 62  TNVLPACARGHFLRPGKEIHARIIR----KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
            +V+ ACA+   +  G+++H+ +       G +  L + NAL D+Y+KCG +  A  +F 
Sbjct: 200 VSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFE 259

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +S +D VS+N LI GY+ T+   E+L LF EM   G   + V+ +  + ACA+L AI  
Sbjct: 260 GLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDI 319

Query: 177 GKEIH--------GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
           G+ IH        GVT    L T      S++D Y + G I+ A+++F+ +  +  +SWN
Sbjct: 320 GRWIHVYIDKKLKGVTNETSLRT------SLIDMYAKCGDIEAAHQVFNSMLYRSLSSWN 373

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
            +I G+ M G  + A +LF  MR + V  D ++++ +L+ACSH GL++ G++ F  M  D
Sbjct: 374 AMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQD 433

Query: 289 -SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAW 347
            ++ P   HY CM+DLLG +GL ++A ++I  +P+EPD  IW +LL AC+ +GN+EL   
Sbjct: 434 YNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAES 493

Query: 348 AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQ 407
            A+ L  ++P++ G Y+LLSN+YA AG+W++ ++VR ++  +  KK PGCS ++    V 
Sbjct: 494 FAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVH 553

Query: 408 DFVVNDRM 415
           +F++ D++
Sbjct: 554 EFIIGDKL 561



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 176/366 (48%), Gaps = 41/366 (11%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  I E N++ WN M+   A +   + AL++   M      PNS +   +L +CA+   
Sbjct: 20  VFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKA 79

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
              G++IHA++++ G   D ++  +L  MYA+ G L  A+ VF+                
Sbjct: 80  FEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITG 139

Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
                           I+ RD VS+N +I GY +     E+L LF EM    ++ D  + 
Sbjct: 140 YASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTL 199

Query: 162 MGAISACANLAAIKQGKEIHG-VTIRKHLH---THLFVANSILDFYTRSGRIDLANKIFD 217
           +  +SACA   +I+ G+++H  V      H   + L + N+++D Y++ G ++ A  +F+
Sbjct: 200 VSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFE 259

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            L  KD  SWNTLI GY        A+ LF+ M   G   + V+ +++L AC+H G ++ 
Sbjct: 260 GLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDI 319

Query: 278 GK---KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
           G+    Y D+        T +  + ++D+  + G +E A ++  ++     ++ W A++ 
Sbjct: 320 GRWIHVYIDKKLKGVTNETSLRTS-LIDMYAKCGDIEAAHQVFNSMLYRSLSS-WNAMIF 377

Query: 335 ACRIYG 340
              ++G
Sbjct: 378 GFAMHG 383



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 125/236 (52%), Gaps = 5/236 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K      A  LF  ++ K++VSWN ++  +    L  +AL L +EM    E PN VT
Sbjct: 244 LYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVT 303

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR--KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           L +VLPACA    +  G+ IH  I +  KG+  +  L  +L DMYAKCG +  A  VFN 
Sbjct: 304 LLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNS 363

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           + +R   S+N +I G++     + +  LFS MR   ++ D ++F+G +SAC++   +  G
Sbjct: 364 MLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLG 423

Query: 178 KEI-HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
           ++I   +T   +L   L     ++D    SG    A ++   +P++ D   W +L+
Sbjct: 424 RQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLL 479


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  300 bits (768), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 158/422 (37%), Positives = 245/422 (58%), Gaps = 13/422 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVT 60
           Y        A  +F     K++V WNA++  +A+  + L +  + +EM    E  PN  T
Sbjct: 150 YMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGT 209

Query: 61  LTNVLPACARGHFLRPGKEIHA-----RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           +  ++ AC     L+ G+ IH       ++R+G+     L  AL ++Y KCG L+ A+ +
Sbjct: 210 MMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVK----LEAALINLYVKCGYLDGARKL 265

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ I  ++ V +N LI GY Q    +E + L  EM L  +K D  +  G +SACA + A 
Sbjct: 266 FDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAF 325

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G  +H    +K +   +F+  +++D Y + G I  A K+FD +  ++ A+WN ++ GY
Sbjct: 326 NLGNWVHRFAEKKGIWD-VFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGY 384

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPT 293
              G+ ++AI LF  MRE G   D ++++A+L AC+H GLVE GK+YFD M Q   + P 
Sbjct: 385 ASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPR 444

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY CMVDLLGRAGL+++A +LIK + VEP+  +WGALL AC I+GN+E+G WAA H+ 
Sbjct: 445 VEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNIEIGEWAAHHMI 504

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            L     G Y++L+N+YA A +++    VRE+M  +   K+ GCS ++  D V +FVV D
Sbjct: 505 KLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCSMIEIGDVVHEFVVAD 564

Query: 414 RM 415
           +M
Sbjct: 565 KM 566



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 161/337 (47%), Gaps = 6/337 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSVTLTNVLPACA 69
           A+ +F+   E +   +NAM+  ++ ++    A+ +  +M    N   +  T   V  ACA
Sbjct: 57  ATQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACA 116

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
               +  GKE+H  I+R G   D FL ++L + Y  CG +  AQ VF+    +D V +N 
Sbjct: 117 SQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNA 176

Query: 129 LIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
           LI GY++     +S  +F EM  +  ++ +  + MG I AC     +K G+ IHG  ++ 
Sbjct: 177 LITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKD 236

Query: 188 H-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
             L   + +  ++++ Y + G +D A K+FD +P K++  WN+LI GY  +G ++  I L
Sbjct: 237 MVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIEL 296

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
              M    +  D  +   +L+AC+  G    G       +   +    +  A ++D+  +
Sbjct: 297 LREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWDVFIGTA-LIDMYAK 355

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            G +  A K+   +  E +   W A+L     +G  E
Sbjct: 356 CGFIGAARKVFDQMN-ERNVATWNAILSGYASHGQAE 391



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 130/244 (53%), Gaps = 4/244 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A  LF  I EKN V WN+++  + Q     + ++L+REM + N  P+  T
Sbjct: 252 LYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFT 311

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++ VL ACA+      G  +H    +KG+ +D+F+  AL DMYAKCG +  A+ VF+ ++
Sbjct: 312 VSGVLSACAQMGAFNLGNWVHRFAEKKGI-WDVFIGTALIDMYAKCGFIGAARKVFDQMN 370

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+  ++N ++ GY+       ++ LFSEMR  G + D ++F+  + ACA+   ++ GK+
Sbjct: 371 ERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQ 430

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGML 237
              + ++ + +   +     ++D   R+G +  A ++   + V+ +   W  L+    + 
Sbjct: 431 YFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIH 490

Query: 238 GEVD 241
           G ++
Sbjct: 491 GNIE 494



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 145/289 (50%), Gaps = 13/289 (4%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVGYSQT 136
           K+IHA+ I   L++  F+   + + +    CL+ A  VFN +   D   YN +I  YS +
Sbjct: 23  KQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRAYSSS 82

Query: 137 SDCSESLSLFSEMR----LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
                ++S++++MR    +LG K+   ++     ACA+  A+++GKE+HGV +R      
Sbjct: 83  QTPCVAISIYNKMRACQNILGDKY---TYPFVFKACASQFAVEKGKEVHGVIVRIGYELD 139

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
            F+ +S+L+FY   G I  A ++FD    KD   WN LI GY   G V  +  +F+ M E
Sbjct: 140 GFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVE 199

Query: 253 -DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY-ACMVDLLGRAGLM 310
              V  +  + + ++ AC     ++ G+     M  D V    +   A +++L  + G +
Sbjct: 200 VKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYL 259

Query: 311 EDAVKLIKNLPVEPDANIWGALL-GACRIYGNVELGAWAAE-HLFMLKP 357
           + A KL   +P E +  +W +L+ G C+I    E+     E HL  LKP
Sbjct: 260 DGARKLFDEIP-EKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKP 307


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  300 bits (768), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 163/437 (37%), Positives = 250/437 (57%), Gaps = 37/437 (8%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  +   N   W AM+  +A   L  ++      M      P S T + +  AC     
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 74  LRPGKEIHAR-IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
           +  GK++HA+ I+  G   DL++ N++ D+Y KCG L  A+ VF+ +S RD VS+  LIV
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 132 -------------------------------GYSQTSDCSESLSLFSEMRLLGMKHDVVS 160
                                          GY+Q     E+L  F +M+ +GM+ D V+
Sbjct: 218 AYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHL--HTHLFVANSILDFYTRSGRIDLANKIFDC 218
             G ISACA L A+K    I  +  R       ++ V ++++D Y++ G  D A K+F+ 
Sbjct: 278 LAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEV 337

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +  ++  S++++ILGY M G   +A+ LF  M +  +  + V++I IL+ACSH GLVE+G
Sbjct: 338 MKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQG 397

Query: 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
           ++ F +M+    V P+  HYACMVDLLGRAG +E+A+ L+K +P+EP+  +WGALLGACR
Sbjct: 398 RQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACR 457

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           I+GN ++   AA  LF L+P   G YILLSN+YA AG+W+E SK+R++++ +  KKNPGC
Sbjct: 458 IHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGC 517

Query: 398 SWVQTRD-EVQDFVVND 413
           SW + ++ E+ DF   D
Sbjct: 518 SWFEGKNGEIHDFFAGD 534



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 150/319 (47%), Gaps = 43/319 (13%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSY------NILIV 131
           K++HA IIR GL+   ++   L  M  K   +++    + +    +V+Y        +I 
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTK---VDVPMGSYPLLVFGQVNYPNPFLWTAMIR 115

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR-KHLH 190
           GY+     SES + ++ MR  G+     +F     AC     +  GK++H  TI      
Sbjct: 116 GYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFA 175

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
           + L+V NS++D Y + G +  A K+FD +  +D  SW  LI+ Y   G++++A  LF   
Sbjct: 176 SDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLF--- 232

Query: 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
            +D    D V++ A++T  +  G  ++  +YF +MQ   ++  E+  A ++    + G +
Sbjct: 233 -DDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAV 291

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370
           + A   I+++    + + +G         GNV +G+                   L +MY
Sbjct: 292 KHA-NWIRDI---AERSGFGP-------SGNVVVGS------------------ALIDMY 322

Query: 371 AEAGKWDEASKVRELMKSR 389
           ++ G  DEA KV E+MK R
Sbjct: 323 SKCGSPDEAYKVFEVMKER 341



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 134/273 (49%), Gaps = 28/273 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      AS LF ++  K++V+W AMV  +AQN    +AL+  ++M       + VTL
Sbjct: 219 YAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTL 278

Query: 62  TNVLPACARGHFLRPGKEIHARIIRK-------GLNFDLFLTNALTDMYAKCGCLNLAQN 114
             V+ ACA     + G   HA  IR        G + ++ + +AL DMY+KCG  + A  
Sbjct: 279 AGVISACA-----QLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYK 333

Query: 115 VFNI-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           VF +   R+  SY+ +I+GY+       +L LF +M    ++ + V+F+G +SAC++   
Sbjct: 334 VFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGL 393

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANS------ILDFYTRSGRIDLANKIFDCLPVK-DSAS 226
           ++QG+++        +     VA S      ++D   R+G ++ A  +   +P++ +   
Sbjct: 394 VEQGRQLFA-----KMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGV 448

Query: 227 WNTLILGYGMLGEVD---TAINLFEAMREDGVG 256
           W  L+    + G  D    A N    +  +G+G
Sbjct: 449 WGALLGACRIHGNPDIAQIAANELFKLEPNGIG 481



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K   P EA  +F  + E+N+ S+++M+  +A +     ALQL  +M      PN VT
Sbjct: 321 MYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVT 380

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
              +L AC+    +  G+++ A++ +  G+         + D+  + GCL  A ++
Sbjct: 381 FIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDL 436


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 156/437 (35%), Positives = 249/437 (56%), Gaps = 37/437 (8%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  +   N   W A++  +A     ++++ L   M      P S T T +L AC+    
Sbjct: 95  VFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALD 154

Query: 74  LRPGKEIHAR-IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--------------- 117
           +  G+++H + I+  G   DL++ N L DMY KCGCL     VF+               
Sbjct: 155 VNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIV 214

Query: 118 -----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS 160
                            +  +D V++  ++ GY+Q +   E+L +F  M+  G+K D V+
Sbjct: 215 AYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVT 274

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHL--HTHLFVANSILDFYTRSGRIDLANKIFDC 218
            +G ISACA L A K    +  V  +      +++ V ++++D Y + G ++ A K+F+ 
Sbjct: 275 LVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFER 334

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +  ++  S++++I+G+ M G    A+ LF+ M +  +  + V++I +LTACSH G+VE+G
Sbjct: 335 MEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQG 394

Query: 279 KKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
           ++ F  M+    V P+E HYACMVDLLGRAG +E+A+ L+K +P+ P   +WGALLGACR
Sbjct: 395 QQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACR 454

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           I+GN ++   AA HLF L+P   G YILLSN+YA AG+WD+ SKVR+LM+++  KKNPGC
Sbjct: 455 IHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGC 514

Query: 398 SWVQTRDE-VQDFVVND 413
           SWV+ +   + +F   D
Sbjct: 515 SWVEGKKGIIHEFFAGD 531



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 146/310 (47%), Gaps = 36/310 (11%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      AS LF  +  K++V+W AMV  +AQN    +AL++   M       + VTL
Sbjct: 216 YAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTL 275

Query: 62  TNVLPACARGHFLRPGKEIHARIIRK-------GLNFDLFLTNALTDMYAKCGCLNLAQN 114
             V+ ACA     + G   +A  +R        G   ++ + +AL DMYAKCG +  A  
Sbjct: 276 VGVISACA-----QLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYK 330

Query: 115 VF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           VF  +  R+  SY+ +IVG++       ++ LF EM    +K + V+F+G ++AC++   
Sbjct: 331 VFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGM 390

Query: 174 IKQGK-------EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
           ++QG+       E HGV   +  +        ++D   R+GR++ A  +   +P+     
Sbjct: 391 VEQGQQLFAMMEECHGVAPSEDHYA------CMVDLLGRAGRLEEALNLVKMMPMNPHGG 444

Query: 227 -WNTLILGYGMLGEVD----TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
            W  L+    + G  D     A +LFE +  +G+G    +YI +    +  G  +   K 
Sbjct: 445 VWGALLGACRIHGNPDMAQIAASHLFE-LEPNGIG----NYILLSNIYASAGRWDDVSKV 499

Query: 282 FDEMQADSVK 291
              M+A  +K
Sbjct: 500 RKLMRAKGLK 509



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 86/406 (21%), Positives = 164/406 (40%), Gaps = 90/406 (22%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---- 116
           L +VL  C     +   K++HA I RKGL    F+   L     K   L++  + +    
Sbjct: 42  LVSVLHGCTH---INQVKQVHAHIFRKGLEQCCFVLAKLLRTLTK---LDVPMDPYPRLV 95

Query: 117 --NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
              + + +   +  LI GY+      ES+ L++ MR  G+     +F   + AC+    +
Sbjct: 96  FQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDV 155

Query: 175 KQGKEIHGVTIR-KHLHTHLFVANSILDFYTRS--------------------------- 206
             G+++H  TI      + L+V N+++D Y +                            
Sbjct: 156 NLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVA 215

Query: 207 ----GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
               G ++ A+++FD LP+KD  +W  ++ GY        A+ +FE M+  GV  D V+ 
Sbjct: 216 YAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTL 275

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTE--MHYACMVDLLGRAGLMEDAVKLIKNL 320
           + +++AC+  G  +      D  +     PT   +  + ++D+  + G +EDA K+ + +
Sbjct: 276 VGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERM 335

Query: 321 ----------------------------------PVEPDANIWGALLGACRIYGNVELGA 346
                                              ++P+   +  +L AC   G VE G 
Sbjct: 336 EERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQG- 394

Query: 347 WAAEHLFMLKPQHCG------YYILLSNMYAEAGKWDEASKVRELM 386
              + LF +  +  G      +Y  + ++   AG+ +EA  + ++M
Sbjct: 395 ---QQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMM 437



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 44/82 (53%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  + E+N+ S+++M+  FA + L   A++L  EM      PN VT
Sbjct: 318 MYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVT 377

Query: 61  LTNVLPACARGHFLRPGKEIHA 82
              VL AC+    +  G+++ A
Sbjct: 378 FIGVLTACSHAGMVEQGQQLFA 399


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 261/443 (58%), Gaps = 34/443 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++  R   A  +F+ +AE+N  SWN+M+  + QN    +AL+L ++M ++   P+  +
Sbjct: 523 MYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFS 582

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L+++L +C      + G+E+H  I+R  +  +  L   L DMYAKCG ++ A  V++ + 
Sbjct: 583 LSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTI 642

Query: 121 RDEVS--------------------------------YNILIVGYSQTSDCSESLSLFSE 148
           + +V                                 +N ++ GY+      ES + F E
Sbjct: 643 KKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLE 702

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK-HLHTHLFVANSILDFYTRSG 207
           M    +++DV++ +  ++ C++L A++ G ++H + I+K  ++  + +  +++D Y++ G
Sbjct: 703 MLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCG 762

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
            I  A  +FD +  K+  SWN +I GY   G    A+ L+E M + G+  + V+++AIL+
Sbjct: 763 AITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILS 822

Query: 268 ACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
           ACSH GLVE+G + F  MQ D +++    HY CMVDLLGRAG +EDA + ++ +P+EP+ 
Sbjct: 823 ACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEV 882

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
           + WGALLGACR++ ++++G  AA+ LF L PQ+ G Y+++SN+YA AG+W E   +R++M
Sbjct: 883 STWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMM 942

Query: 387 KSREAKKNPGCSWVQTRDEVQDF 409
           K +  KK+PG SW++   E+Q F
Sbjct: 943 KMKGVKKDPGVSWIEINSEIQIF 965



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 173/318 (54%), Gaps = 2/318 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK         +F  + E+N V+WN++++  AQ      AL L   M       N   
Sbjct: 320 MYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFN 379

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L ++L A A    +  G+E+H  ++R  LN D+ L +AL DMY+KCG +  A  VF ++ 
Sbjct: 380 LGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLL 439

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAAIKQGK 178
            R+EVSYN L+ GY Q     E+L L+ +M+   G++ D  +F   ++ CAN     QG+
Sbjct: 440 ERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGR 499

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH   IR ++  ++ V   ++  Y+  GR++ A +IF+ +  +++ SWN++I GY   G
Sbjct: 500 QIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNG 559

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
           E   A+ LF+ M+ +G+  D  S  ++L++C      +KG++  + +  ++++   +   
Sbjct: 560 ETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV 619

Query: 299 CMVDLLGRAGLMEDAVKL 316
            +VD+  + G M+ A K+
Sbjct: 620 VLVDMYAKCGSMDYAWKV 637



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 169/347 (48%), Gaps = 5/347 (1%)

Query: 1   MYAKSSRPAEASY---LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           +YA+S    +  Y   LF  + E+N+ +WN M+  +A+    ++ L+L   M     F +
Sbjct: 115 LYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSD 174

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             T  +V+ AC     +   +++ + +++ GLN +LF+  AL D YA+ G ++ A    +
Sbjct: 175 KFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLD 234

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            I     V++N +I GY +     E+  +F  M  +G+  D  +F  A+  C  L +   
Sbjct: 235 EIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDG 294

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK++H   I        FV N+++D Y +    +   K+FD +  ++  +WN++I     
Sbjct: 295 GKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQ 354

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G  + A+ LF  M+E G   +  +  +IL A +    + KG++    +  + +    + 
Sbjct: 355 FGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIIL 414

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            + +VD+  + G++E+A ++ ++L +E +   + ALL      G  E
Sbjct: 415 GSALVDMYSKCGMVEEAHQVFRSL-LERNEVSYNALLAGYVQEGKAE 460



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 154/337 (45%), Gaps = 15/337 (4%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN---LAQ 113
           N +  ++++  C   +  + GK IH ++I  G N D +L   +  +YA+ GCL+    A+
Sbjct: 70  NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYAR 129

Query: 114 NVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
            +F  +  R+  ++N +I+ Y++  D  E L L+  MR  G   D  +F   I AC  + 
Sbjct: 130 KLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAME 189

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
            +   +++    ++  L+ +LFV  +++D Y R G +D A    D +      +WN +I 
Sbjct: 190 DMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIA 249

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
           GY  +   + A  +F+ M + GV  D  ++ + L  C      + GK+   ++ A   K 
Sbjct: 250 GYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKG 309

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
                  ++D+  +    E  +K+   +  E +   W +++ A       + G +    +
Sbjct: 310 DTFVGNALIDMYAKCDDEESCLKVFDEMG-ERNQVTWNSIISA-----EAQFGHFNDALV 363

Query: 353 FMLKPQHCGY----YILLSNMYAEAGKWDEASKVREL 385
             L+ Q  GY    + L S + A AG  D   K REL
Sbjct: 364 LFLRMQESGYKSNRFNLGSILMASAGLAD-IGKGREL 399


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 163/437 (37%), Positives = 250/437 (57%), Gaps = 37/437 (8%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  +   N   W AM+  +A   L  ++      M      P S T + +  AC     
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 74  LRPGKEIHAR-IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
           +  GK++HA+ I+  G   DL++ N++ D+Y KCG L  A+ VF+ +S RD VS+  LIV
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 132 -------------------------------GYSQTSDCSESLSLFSEMRLLGMKHDVVS 160
                                          GY+Q     E+L  F +M+ +GM+ D V+
Sbjct: 218 AYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHL--HTHLFVANSILDFYTRSGRIDLANKIFDC 218
             G ISACA L A+K    I  +  R       ++ V ++++D Y++ G  D A K+F+ 
Sbjct: 278 LAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEV 337

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +  ++  S++++ILGY M G   +A+ LF  M +  +  + V++I IL+ACSH GLVE+G
Sbjct: 338 MKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQG 397

Query: 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
           ++ F +M+    V P+  HYACMVDLLGRAG +E+A+ L+K +P+EP+  +WGALLGACR
Sbjct: 398 RQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACR 457

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           I+GN ++   AA  LF L+P   G YILLSN+YA AG+W+E SK+R++++ +  KKNPGC
Sbjct: 458 IHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGC 517

Query: 398 SWVQTRD-EVQDFVVND 413
           SW + ++ E+ DF   D
Sbjct: 518 SWFEGKNGEIHDFFAGD 534



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 150/319 (47%), Gaps = 43/319 (13%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSY------NILIV 131
           K++HA IIR GL+   ++   L  M  K   +++    + +    +V+Y        +I 
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTK---VDVPMGSYPLLVFGQVNYPNPFLWTAMIR 115

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR-KHLH 190
           GY+     SES + ++ MR  G+     +F     AC     +  GK++H  TI      
Sbjct: 116 GYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFA 175

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
           + L+V NS++D Y + G +  A K+FD +  +D  SW  LI+ Y   G++++A  LF+ +
Sbjct: 176 SDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDL 235

Query: 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
                  D V++ A++T  +  G  ++  +YF +MQ   ++  E+  A ++    + G +
Sbjct: 236 PLK----DMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAV 291

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370
           + A   I+++    + + +G         GNV +G+                   L +MY
Sbjct: 292 KHA-NWIRDI---AERSGFGP-------SGNVVVGS------------------ALIDMY 322

Query: 371 AEAGKWDEASKVRELMKSR 389
           ++ G  DEA KV E+MK R
Sbjct: 323 SKCGSPDEAYKVFEVMKER 341



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 134/273 (49%), Gaps = 28/273 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      AS LF ++  K++V+W AMV  +AQN    +AL+  ++M       + VTL
Sbjct: 219 YAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTL 278

Query: 62  TNVLPACARGHFLRPGKEIHARIIRK-------GLNFDLFLTNALTDMYAKCGCLNLAQN 114
             V+ ACA     + G   HA  IR        G + ++ + +AL DMY+KCG  + A  
Sbjct: 279 AGVISACA-----QLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYK 333

Query: 115 VFNI-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           VF +   R+  SY+ +I+GY+       +L LF +M    ++ + V+F+G +SAC++   
Sbjct: 334 VFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGL 393

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANS------ILDFYTRSGRIDLANKIFDCLPVK-DSAS 226
           ++QG+++        +     VA S      ++D   R+G ++ A  +   +P++ +   
Sbjct: 394 VEQGRQLFA-----KMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGV 448

Query: 227 WNTLILGYGMLGEVD---TAINLFEAMREDGVG 256
           W  L+    + G  D    A N    +  +G+G
Sbjct: 449 WGALLGACRIHGNPDIAQIAANELFKLEPNGIG 481



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K   P EA  +F  + E+N+ S+++M+  +A +     ALQL  +M      PN VT
Sbjct: 321 MYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVT 380

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
              +L AC+    +  G+++ A++ +  G+         + D+  + GCL  A ++
Sbjct: 381 FIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDL 436


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 146/417 (35%), Positives = 253/417 (60%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK    ++A  +F  + EKN+V+W  ++A +AQ      AL+L+  M      PN +T
Sbjct: 192 MYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKIT 251

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             ++L  C     L  GK++H  II+ G   +L++ N+L  MY KCG L  A+ +F ++ 
Sbjct: 252 FASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLP 311

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++  ++ GY+Q     E+++LF  M+  G+K D ++F   +++C++ A +++GK 
Sbjct: 312 HRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKR 371

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY-GMLG 238
           IH   +    +  +++ ++++  Y + G +D A+ +F+ +  ++  +W  +I G     G
Sbjct: 372 IHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHG 431

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A+  F+ M++ G+  D V++ ++L+AC+H GLVE+G+K+F  M  D  +KP   HY
Sbjct: 432 RCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHY 491

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +C VDLLGRAG +E+A  +I ++P  P  ++WGALL ACR++ +VE G  AAE++  L P
Sbjct: 492 SCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDP 551

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
              G Y+ LS++YA AG++++A KVR++M+ R+  K PG SW++   +V  F V D+
Sbjct: 552 DDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDK 608



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 177/337 (52%), Gaps = 2/337 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F +I ++NIVSW AM+  F      L+A +    M +    P+ VT
Sbjct: 91  MYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVT 150

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L A      L+ G+++H  I+  GL  +  +  +L  MYAKCG ++ A+ +F+ + 
Sbjct: 151 FVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLP 210

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ V++ +LI GY+Q      +L L   M+   +  + ++F   +  C   AA++ GK+
Sbjct: 211 EKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKK 270

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+      L+V NS++  Y + G ++ A K+F  LP +D  +W  ++ GY  LG 
Sbjct: 271 VHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGF 330

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D AINLF  M++ G+  D +++ ++LT+CS    +++GK+   ++            + 
Sbjct: 331 HDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSA 390

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
           +V +  + G M+DA  L+ N   E +   W A++  C
Sbjct: 391 LVSMYAKCGSMDDA-SLVFNQMSERNVVAWTAIITGC 426



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 174/390 (44%), Gaps = 46/390 (11%)

Query: 41  KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100
           +AL ++  M +      S     +L  CAR   L  G+E+HA I++ G+  + +L N L 
Sbjct: 30  EALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLL 89

Query: 101 DMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
            MYAKCG L  A+ VF+ I  R+ VS+  +I  +   +   E+   +  M+L G K D V
Sbjct: 90  SMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKV 149

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           +F+  ++A  N   ++ G+++H   +   L     V  S++  Y + G I  A  IFD L
Sbjct: 150 TFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRL 209

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
           P K+  +W  LI GY   G+VD A+ L E M++  V  + +++ +IL  C+    +E GK
Sbjct: 210 PEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGK 269

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP------------------ 321
           K    +              ++ +  + G +E+A KL  +LP                  
Sbjct: 270 KVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLG 329

Query: 322 ----------------VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI- 364
                           ++PD   + ++L +C     ++ G    + L      H GY + 
Sbjct: 330 FHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLV-----HAGYNLD 384

Query: 365 -----LLSNMYAEAGKWDEASKVRELMKSR 389
                 L +MYA+ G  D+AS V   M  R
Sbjct: 385 VYLQSALVSMYAKCGSMDDASLVFNQMSER 414



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 100/211 (47%), Gaps = 1/211 (0%)

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
           +T    E+L + + M L G +     F G +  CA L +++QG+E+H   ++  +  + +
Sbjct: 24  KTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 83

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           + N++L  Y + G +  A ++FD +  ++  SW  +I  +    +   A   +E M+  G
Sbjct: 84  LENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
              D V+++++L A ++  L++ G+K   E+    ++        +V +  + G +  A 
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKAR 203

Query: 315 KLIKNLPVEPDANIWGALLGACRIYGNVELG 345
            +   LP E +   W  L+      G V++ 
Sbjct: 204 VIFDRLP-EKNVVTWTLLIAGYAQQGQVDVA 233


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 153/416 (36%), Positives = 248/416 (59%), Gaps = 15/416 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  +   A  +F  + E ++VSW AM+A + Q+    +AL L +EM       +++ 
Sbjct: 482 MYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIG 541

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             + + ACA    L  G++IHA+    G + DL + NAL  +YA+CG +  A   F+ I 
Sbjct: 542 FASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIY 601

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+N L+ G++Q+    E+L++F++M   G++ +  +F  A+SA AN+A ++ GK+
Sbjct: 602 AKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQ 661

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG+  +    +   V+N+++  Y + G ID               SWN++I GY   G 
Sbjct: 662 IHGMIRKTGYDSETEVSNALITLYAKCGTID-------------DISWNSMITGYSQHGC 708

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+ LFE M++  V  + V+++ +L+ACSH GLV++G  YF  M +A ++ P   HYA
Sbjct: 709 GFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYA 768

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGR+GL+  A + ++ +P++PDA +W  LL AC ++ N+++G +AA HL  L+P+
Sbjct: 769 CVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPK 828

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y+L+SNMYA +GKWD   + R++MK R  KK PG SWV+  + V  F   D+
Sbjct: 829 DSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQ 884



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 171/336 (50%), Gaps = 31/336 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K+   + A  +F N+  ++ VSW AM++  +QN  E +A+ L  ++           
Sbjct: 208 LYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI----------- 256

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL AC +  F   GK++H  ++++G + + ++ NAL  +Y++ G L+ A+ +F+ +S
Sbjct: 257 ---VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMS 313

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VSYN LI G +Q    + +L+LF +M L   K D V+    +SACA++ A+  GK+
Sbjct: 314 QRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQ 373

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   I+  + + + V  S+LD Y +   I  A++ F C               YG L  
Sbjct: 374 FHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLC---------------YGQLDN 418

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           ++ +  +F  M+ +G+  +  +Y +IL  C+  G  + G++   ++     +      + 
Sbjct: 419 LNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSV 478

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++D+  + G ++ A+K+ + L  E D   W A++  
Sbjct: 479 LIDMYAKHGKLDHALKIFRRLK-ENDVVSWTAMIAG 513



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 152/280 (54%), Gaps = 14/280 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y++S   + A  +FH +++++ VS+N++++  AQ     +AL L ++M +  + P+ VT
Sbjct: 295 LYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVT 354

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + ++L ACA    L  GK+ H+  I+ G+  D+ +  +L D+Y KC  +  A   F    
Sbjct: 355 VASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF---- 410

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
                     + Y Q  + ++S  +F++M++ G+  +  ++   +  C  L A   G++I
Sbjct: 411 ----------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQI 460

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++     +++V++ ++D Y + G++D A KIF  L   D  SW  +I GY    + 
Sbjct: 461 HTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKF 520

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
             A+NLF+ M++ G+  D + + + ++AC+    +++G++
Sbjct: 521 TEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQ 560



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 183/413 (44%), Gaps = 49/413 (11%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  +  +++  WN +   F   RL  +   L R M   N   +      VL  C+    
Sbjct: 119 VFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAV 178

Query: 74  -LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIV 131
             R  ++IHA+ I  G     F+ N L D+Y K G L+ A+ VF N+  RD VS+  +I 
Sbjct: 179 SFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMIS 238

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           G SQ     E++ LF ++ L              SAC  +   + GK++HG+ +++   +
Sbjct: 239 GLSQNGYEEEAMLLFCQIVL--------------SACTKVEFFEFGKQLHGLVLKQGFSS 284

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
             +V N+++  Y+RSG +  A +IF C+  +D  S+N+LI G    G ++ A+ LF+ M 
Sbjct: 285 ETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMN 344

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFD--------------------EMQADSVK 291
            D    D V+  ++L+AC+  G +  GK++                       ++   +K
Sbjct: 345 LDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIK 404

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE---PDANIWGALLGACRIYGNVELGAWA 348
                + C     G+   +  + ++   + +E   P+   + ++L  C   G  +LG   
Sbjct: 405 TAHEFFLCY----GQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQI 460

Query: 349 AEHLFMLKPQHCGYY-ILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
              +     Q   Y   +L +MYA+ GK D A K+      R  K+N   SW 
Sbjct: 461 HTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKI-----FRRLKENDVVSWT 508



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 115/274 (41%), Gaps = 32/274 (11%)

Query: 99  LTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157
           L D Y   G LN A NVF+ +  R    +N +   +           LF  M    ++ D
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 158 VVSFMGAISACA-NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
              F   +  C+ N  + +  ++IH  TI     +  F+ N ++D Y ++G +  A K+F
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 217 DCLPVKDSASWNTLILGYGMLGEVD--------------TAINLFEAMRE-DGV----GY 257
           + L  +DS SW  +I G    G  +              T +  FE  ++  G+    G+
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGF 282

Query: 258 DPVSYI--AILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAV 314
              +Y+  A++T  S  G +   ++ F  M Q D V      Y  ++  L + G +  A+
Sbjct: 283 SSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVS-----YNSLISGLAQQGYINRAL 337

Query: 315 KLIKNLPVE---PDANIWGALLGACRIYGNVELG 345
            L K + ++   PD     +LL AC   G +  G
Sbjct: 338 ALFKKMNLDCQKPDCVTVASLLSACASVGALPNG 371



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 88/221 (39%), Gaps = 36/221 (16%)

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTL---ILGYGMLGEVDTAINLFEAMREDGV 255
           ++DFY   G ++ A  +FD +P++  + WN +    +   ++G V     LF  M    V
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVP---GLFRRMLTKNV 159

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP--TEMHYAC--MVDLLGRAGLME 311
            +D   +  +L  CS   +     ++ +++ A ++        + C  ++DL  + G + 
Sbjct: 160 EFDERIFAVVLRGCSGNAV---SFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLS 216

Query: 312 DAVKLIKNLPVEPDANIWGALLG----------ACRIYGNVELGAWAAEHLFMLKPQHCG 361
            A K+ +NL    D+  W A++           A  ++  + L A      F    Q  G
Sbjct: 217 SAKKVFENLKAR-DSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHG 275

Query: 362 YYI------------LLSNMYAEAGKWDEASKVRELMKSRE 390
             +             L  +Y+ +G    A ++   M  R+
Sbjct: 276 LVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRD 316


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 159/416 (38%), Positives = 237/416 (56%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K         +F      N++ W+A+++N AQ+    KAL+L  E  + +   +S  
Sbjct: 361 MYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGI 420

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L  VL AC+       G +IH    + G   D+F+ +AL D+YAKC  +  ++ VF  +S
Sbjct: 421 LVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLS 480

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+N LI GY+Q     E+L  F +M+L  ++ + V+    +S CA+L+ +   KE
Sbjct: 481 QKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKE 540

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  IR+ L + + V+NS++  Y + G I+ +   F+ +P ++  SWN++ILG GM   
Sbjct: 541 VHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSR 600

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            D  I LF+ M   G+  D V++ AIL+ACSH G V++G KYF  M  D ++KP    Y 
Sbjct: 601 TDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYT 660

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAG +  A  LI  +P  PD  IWG+LLG+C+ +G+  L    A H+F L P 
Sbjct: 661 CMVDLLGRAGHLNQAYDLIMAMPCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFKLVPS 720

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             GY +LL+N+Y   GK  E SKVR  +K    KK PGCSW++  +    F+  DR
Sbjct: 721 SVGYRVLLANLYENLGKGREGSKVRSEIKDMGLKKKPGCSWIEVDNNFHIFIAGDR 776



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 145/288 (50%), Gaps = 9/288 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPNSV 59
           MY K     +A  +F  + E ++VSWN M++ F ++    ++L   R M      +PN V
Sbjct: 153 MYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRV 212

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
              + + +C+    L  G+EIH  +++ GL+ + +L ++L +MY KCG +  A+N+FN  
Sbjct: 213 ACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSI 272

Query: 120 F------RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
                  R+ V +N++I GY      S++L LF +M + G+K D  + +   S C+    
Sbjct: 273 LDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLD 332

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           I  GK+IHG+  +  L  ++ V  ++LD Y + G +    KIF      +   W+ +I  
Sbjct: 333 IAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISN 392

Query: 234 YGMLGEVDTAINLF-EAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
               G    A+ LF E   EDG+  D    +A+L ACS   L  +G +
Sbjct: 393 CAQSGCPTKALELFYEFKMEDGLA-DSGILVAVLRACSSLTLKPEGMQ 439



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 134/267 (50%), Gaps = 8/267 (2%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQ 135
           G++IH  +++ G+  D+ + N+L  MY KCG +  A  +F  +   D VS+N +I G+ +
Sbjct: 128 GRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQK 187

Query: 136 TSDCSESLSLFSEMRL-LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
           + D + SL  F  M    G+  + V+ + +I +C++L ++  G+EIHGV ++  L    +
Sbjct: 188 SMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEY 247

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSAS-----WNTLILGYGMLGEVDTAINLFEA 249
           + +S+++ Y + G I  A  IF+ +  KDS       WN +I GY   G    A+ LF  
Sbjct: 248 LVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIK 307

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M   G+  D  + +++ + CS    +  GK+    +    +K        ++D+  + G 
Sbjct: 308 MMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGD 367

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGAC 336
           M   +K+ +      +  +W A++  C
Sbjct: 368 MGTGLKIFRR-SQNHNLIMWSAVISNC 393



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 118/250 (47%), Gaps = 16/250 (6%)

Query: 113 QNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK-HDVVSFMGAISACANL 171
           Q   ++SF + V     I  Y++     +++ ++ +M   G+K  +   F   I A   L
Sbjct: 68  QTFVSVSFANNV-----IREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGL 122

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
             + +G++IHG  ++  +   + V NS+L  Y + G ++ A ++F+ +P  D  SWNT+I
Sbjct: 123 CDVYKGRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMI 182

Query: 232 LGYGMLGEVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
            G+    +   ++  F +M  E G+  + V+ ++ + +CS    +  G++    +    +
Sbjct: 183 SGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGL 242

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNL----PVEPDANIWGALLGACRIYGNVELGA 346
              E   + ++++  + G +++A  +  ++     V  +A IW  +     I G V  G 
Sbjct: 243 DVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVM-----ISGYVSNGC 297

Query: 347 WAAEHLFMLK 356
           ++   L  +K
Sbjct: 298 FSQALLLFIK 307


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 153/402 (38%), Positives = 239/402 (59%), Gaps = 9/402 (2%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + EK++VSWN ++A  A+N L  + L+++REM   N  P+S TL++VLP  A    
Sbjct: 195 IFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVD 254

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRDEVSYNILIVG 132
           +  GKEIH   IR+GL+ D+++ ++L DMYAKC  +  +  VF + + RD +S+N +I G
Sbjct: 255 ISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAG 314

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
             Q     E L  F +M +  +K    SF   + ACA+L  +  GK++HG   R     +
Sbjct: 315 CVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDEN 374

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +F+A+S++D Y + G I  A +IFD + ++D  SW  +I+G  + G+   AI LFE M  
Sbjct: 375 IFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMET 434

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLME 311
           +G+        A+LTACSHGGLV++  KYF+ M  D  + P   HYA + DLLGRAG +E
Sbjct: 435 EGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLE 487

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371
           +A   I  + + P  +IW  LL ACR++ N+++    A  +  + P + G YILL+N+Y+
Sbjct: 488 EAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYS 547

Query: 372 EAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            A +W EA+K R  M+    +K P CSW++ +++V  F+  D
Sbjct: 548 AARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGD 589



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 161/361 (44%), Gaps = 34/361 (9%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           LF+ I     ++W +++  +  + L  ++L     M     +P+     +VL +CA    
Sbjct: 62  LFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMD 121

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL-------AQNVFN--------- 117
           L  G+ +H  IIR GL+FDL+  NAL +MY+K   L         A  VF+         
Sbjct: 122 LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSV 181

Query: 118 -----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS 160
                            +  +D VS+N +I G ++     E+L +  EM    +K D  +
Sbjct: 182 RTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFT 241

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
               +   A    I +GKEIHG +IR+ L   ++VA+S++D Y +  R+  + ++F  L 
Sbjct: 242 LSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLT 301

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            +D  SWN++I G    G  D  +  F  M    +     S+ +I+ AC+H   +  GK+
Sbjct: 302 ERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ 361

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
               +  +         + +VD+  + G +  A ++   + +  D   W A++  C ++G
Sbjct: 362 LHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALHG 420

Query: 341 N 341
            
Sbjct: 421 Q 421



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 131/246 (53%), Gaps = 10/246 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK +R A++  +F  + E++ +SWN+++A   QN L  + L+  R+M +    P S +
Sbjct: 283 MYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYS 342

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++++PACA    L  GK++H  I R G + ++F+ ++L DMYAKCG +  A+ +F+ + 
Sbjct: 343 FSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMR 402

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
            RD VS+  +I+G +      +++ LF +M   G+K         ++AC++   + +  K
Sbjct: 403 LRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWK 455

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGML 237
             + +T    +   +    ++ D   R+GR++ A      + +  + S W TL+    + 
Sbjct: 456 YFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVH 515

Query: 238 GEVDTA 243
             +D A
Sbjct: 516 KNIDMA 521


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 253/416 (60%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  I E+++VSWN M+    QN  E KA+ +  EM       +  T
Sbjct: 42  MYSKCGLIRRACKVFDEIPERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFT 101

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +++V+ ACA    +   +++HA  I+  ++ D+F+  AL D+YAKCG +  A  VF  + 
Sbjct: 102 VSSVVCACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMP 161

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R++V+++ ++ G+ Q     E L LF+  + +G++++       I ACA LAA+ +G++
Sbjct: 162 ERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQ 221

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H +  R     + FVA++++D Y + G I+ A  +F  +  K+   WN +I G+     
Sbjct: 222 VHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHAC 281

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
               +NLFE M++ G+  D V+Y+A+L+AC H GLV+KG+ YFD M  + +V P  +HY+
Sbjct: 282 SSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYS 341

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGR GL+ +A +L+  +P    A++WG+LL +CRI+GN+EL   AA++LF ++P 
Sbjct: 342 CMVDILGRGGLVHEAHELMTKMPFAATASMWGSLLASCRIHGNLELAEIAAKNLFEMEPD 401

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G Y+LL+N YA + KW+EA+K R+ +K  E  K  G SW++ +D+V  F+  +R
Sbjct: 402 RGGNYVLLANTYAASKKWEEAAKARKSLKGSEILKERGKSWIEIKDKVHTFMAGER 457



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 137/274 (50%), Gaps = 2/274 (0%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L ++L  CA+      GK  H ++IR GL  D   +N L +MY+KCG +  A  VF+ I 
Sbjct: 1   LHSLLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIP 60

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS+NI+I    Q  +  +++ +F EM+  G      +    + ACA    +   ++
Sbjct: 61  ERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQ 120

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+  +   +FV  +++D Y + G I+ A+ +F+ +P ++  +W++++ G+     
Sbjct: 121 LHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNEL 180

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            +  + LF   +E G+  +     +++ AC+    + +G++    +      P     + 
Sbjct: 181 YEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASA 240

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +VD+  + G +E+A  L  N+  + +  +W A++
Sbjct: 241 LVDMYAKCGSIEEAYVLFCNIE-KKNVVLWNAII 273


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 159/424 (37%), Positives = 255/424 (60%), Gaps = 12/424 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A  +F  I  K++VSWNAM++ +A+     KAL+L +EM   N  P+  T+
Sbjct: 151 YASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTM 210

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             V+ ACA+   +  G+++H+ I   G   +L + NAL D+Y+KCG +  A  +   +S 
Sbjct: 211 ATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSN 270

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D +S+N LI GY+  +   E+L LF EM   G   + V+ +  + ACA+L AI  G+ I
Sbjct: 271 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 330

Query: 181 HGVTIRKHLHTHLFVAN------SILDFYTRSGRIDLANKIFDCLPVKDS-ASWNTLILG 233
           H V I K L   + V N      S++D Y + G ID A ++ D      S ++WN +I G
Sbjct: 331 H-VYIDKKLKG-VVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFG 388

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKP 292
           + M G  + A ++F  MR++G+  D ++++ +L+ACSH G+++ G+  F  M+ D ++ P
Sbjct: 389 FAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITP 448

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
              HY CM+DLLG +GL ++A ++I  +P+EPD  IW +LL AC+I+GN+ELG   A+ L
Sbjct: 449 KLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKL 508

Query: 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN-PGCSWVQTRDEVQDFVV 411
             ++P++ G Y+LLSN+YA AGKW+E  K+R L+  +  KK  PGCS ++    V +F++
Sbjct: 509 IKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFII 568

Query: 412 NDRM 415
            D++
Sbjct: 569 GDKL 572



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 173/363 (47%), Gaps = 36/363 (9%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  I E N + WN M    A +   + AL+L   M      PN  T   +L +CA+   
Sbjct: 31  VFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKT 90

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
            + G++IH  +++ G + DL++  +L  MYA+ G L  AQ VF+                
Sbjct: 91  FKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITG 150

Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
                           I  +D VS+N +I GY++T +  ++L LF EM    +K D  + 
Sbjct: 151 YASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTM 210

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
              +SACA   +I+ G+++H         ++L + N+++D Y++ G ++ A ++ + L  
Sbjct: 211 ATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSN 270

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-- 279
           KD  SWNTLI GY  +     A+ LF+ M   G   + V+ ++IL AC+H G ++ G+  
Sbjct: 271 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 330

Query: 280 -KYFD-EMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
             Y D +++   V         ++D+  + G ++ A ++  +       + W A++    
Sbjct: 331 HVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFA 390

Query: 338 IYG 340
           ++G
Sbjct: 391 MHG 393


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 253/416 (60%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK     +A  +F +I +KN+VSW A+++ +       +A+ + R +   N  P+S T
Sbjct: 156 LYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFT 215

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  VL AC +   L  G+ IH  I+  G+  ++F+  +L DMYAKCG +  A++VF+ + 
Sbjct: 216 IVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMP 275

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+  +I GY+      E++ LF +M+   +K D  + +G +SACA L A++ G+ 
Sbjct: 276 EKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEW 335

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           + G+  R     +  +  +++D Y + G +  A ++F  +  KD   WN +I G  M G 
Sbjct: 336 VSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGY 395

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
           V  +  LF  + + G+  D  ++I +L  C+H GLV++G++YF+ M +  S+ P+  HY 
Sbjct: 396 VKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYG 455

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAGL+++A +LI+N+P+E +A +WGALLGACRI+ + +L   A + L  L+P 
Sbjct: 456 CMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPW 515

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G Y+LLSN+Y+   KWDEA+KVR  M  +  +K PGCSW++    V +F+V D+
Sbjct: 516 NSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDK 571



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 180/372 (48%), Gaps = 5/372 (1%)

Query: 13  YLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGH 72
           +LFH I + NI  WN M+     N     A++    M      PN+ T   VL ACAR  
Sbjct: 67  FLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLL 126

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIV 131
            L+ G +IH  +++ G + D+F+  +L  +YAKCG L  A  VF +I  ++ VS+  +I 
Sbjct: 127 DLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIIS 186

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           GY       E++ +F  +  + +  D  + +  +SAC  L  +  G+ IH   +   +  
Sbjct: 187 GYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVR 246

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
           ++FV  S++D Y + G ++ A  +FD +P KD  SW  +I GY + G    AI+LF  M+
Sbjct: 247 NVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQ 306

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
            + V  D  + + +L+AC+  G +E G+     +  +      +    ++DL  + G M 
Sbjct: 307 RENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMS 366

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVEL--GAWAAEHLFMLKPQHCGYYILLSNM 369
            A ++ K +  E D  +W A++    + G V++  G +       +KP    +  LL   
Sbjct: 367 RAWEVFKGMK-EKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGC 425

Query: 370 YAEAGKWDEASK 381
              AG  DE  +
Sbjct: 426 -THAGLVDEGRR 436



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 129/304 (42%), Gaps = 43/304 (14%)

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           +N +I G        +++  +  MR  G   +  +F   + ACA L  ++ G +IH + +
Sbjct: 80  WNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVV 139

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
           +      +FV  S++  Y + G ++ A+K+FD +P K+  SW  +I GY  +G+   AI+
Sbjct: 140 KGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAID 199

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           +F  + E  +  D  + + +L+AC+  G +  G+     +    +         +VD+  
Sbjct: 200 MFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYA 259

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGAL--------------------------------- 332
           + G ME A  +   +P E D   WGA+                                 
Sbjct: 260 KCGNMEKARSVFDGMP-EKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVV 318

Query: 333 --LGACRIYGNVELGAWAA----EHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
             L AC   G +ELG W +     + F+  P        L ++YA+ G    A +V + M
Sbjct: 319 GVLSACARLGALELGEWVSGLVDRNEFLYNPV---LGTALIDLYAKCGSMSRAWEVFKGM 375

Query: 387 KSRE 390
           K ++
Sbjct: 376 KEKD 379


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/415 (38%), Positives = 244/415 (58%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA       A  LFH +  K +++WNAM+A + +N    + +++ + M       + VT
Sbjct: 215 MYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVT 274

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V  AC R      G+ I      KG+     L  AL DMYAKCG L+ A+ +F+ + 
Sbjct: 275 LLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMH 334

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V+++ +I GY+Q+  C E+L++F+EM+   +  + V+ +  +SACA L A++ GK 
Sbjct: 335 SRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKW 394

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H    RK L   + +  +++DFY + G I  A K F+ +PV+++ +W  LI G    G 
Sbjct: 395 VHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGR 454

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LF +M E  +    V++I +L ACSHG LVE+G+++F  M  D  + P   HY 
Sbjct: 455 SREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYG 514

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAGL+++A + I+N+P+EP+A +W ALL AC ++ NVE+G  A + +  L P 
Sbjct: 515 CMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPC 574

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           H G YILLSN YA  G+W  A+ VR+ MK +  +K PGCS ++    + +F   D
Sbjct: 575 HSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAED 629



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 153/311 (49%), Gaps = 3/311 (0%)

Query: 25  SWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACARGHFLRPGKEIHAR 83
           S+N ++ +F +      AL L  EM       P+  T+ N + +C+R   L  G+ + A 
Sbjct: 137 SYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAY 196

Query: 84  IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSES 142
             ++G   D F+ N+L  MYA CG +  A  +F+ +  +  +++N +I GY +  D  E 
Sbjct: 197 AFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEV 256

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
           + +F  M  +    D V+ +   +AC  L     G+ I      K +     +A +++D 
Sbjct: 257 VEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDM 316

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y + G +D A ++FD +  +D  +W+ +I GY        A+ +F  M+   V  + V+ 
Sbjct: 317 YAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTM 376

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
           +++L+AC+  G +E GK     ++   +  T +    +VD   + G ++DAVK  +++PV
Sbjct: 377 VSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPV 436

Query: 323 EPDANIWGALL 333
             +   W AL+
Sbjct: 437 R-NTWTWTALI 446



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 128/311 (41%), Gaps = 48/311 (15%)

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           R   SYNILI  + +     ++L LF EM     +  D  +    + +C+ +  +  G+ 
Sbjct: 133 RSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRG 192

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +     ++      FV NS++  Y   G +  A+ +F  + VK   +WN +I GY   G+
Sbjct: 193 VQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGD 252

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTAC------------------------------ 269
               + +F+ M E    +D V+ +++ TAC                              
Sbjct: 253 WKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATA 312

Query: 270 -----SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IKNLP 321
                +  G ++K ++ FD M +  V    + ++ M+    ++    +A+ +   ++   
Sbjct: 313 LVDMYAKCGELDKARRLFDRMHSRDV----VAWSAMISGYTQSDRCREALAIFNEMQGTE 368

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDE 378
           V P+     ++L AC + G +E G W   H ++ +       IL   L + YA+ G   +
Sbjct: 369 VNPNDVTMVSVLSACAVLGALETGKWV--HSYIRRKDLPLTVILGTALVDFYAKCGCIKD 426

Query: 379 ASKVRELMKSR 389
           A K  E M  R
Sbjct: 427 AVKAFESMPVR 437


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/420 (37%), Positives = 247/420 (58%), Gaps = 5/420 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     EA+ +F+ +  +N++SWNAM+A +   R   +AL L REM    E P+  T
Sbjct: 48  MYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYT 107

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVFN- 117
            ++ L AC+       G +IHA +IR G  +     +  AL D+Y KC  +  A+ VF+ 
Sbjct: 108 YSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDR 167

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           I  +  +S++ LI+GY+Q  +  E++ LF E+R    + D       I   A+ A ++QG
Sbjct: 168 IEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQG 227

Query: 178 KEIHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           K++H  TI+  +    + VANS+LD Y + G    A+ +F  +  ++  SW  +I GYG 
Sbjct: 228 KQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGK 287

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEM 295
            G  + A+ LF  M+E+G+  D V+Y+A+L+ACSH GL+++GKKYF  + ++  +KP   
Sbjct: 288 HGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVE 347

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYACMVDLLGR G +++A  LI+ +P++P+  IW  LL  CR++G+VE+G    E L   
Sbjct: 348 HYACMVDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRR 407

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           +  +   Y+++SNMYA AG W E+ K+RE +K +  KK  G SWV+   E+  F   D M
Sbjct: 408 EGNNPANYVMVSNMYAHAGYWKESEKIRETLKRKGLKKEAGRSWVEMDKEIHIFYNGDGM 467



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 174/378 (46%), Gaps = 52/378 (13%)

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
              S  L  +L  C++   L  GK++H  + + G +    + N++ DMY+KCG +  A  
Sbjct: 1   MSESRLLNKILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAAR 60

Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           VFN +  R+ +S+N +I GY+   +  E+L+LF EMR  G   D  ++  ++ AC+   A
Sbjct: 61  VFNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADA 120

Query: 174 IKQGKEIHGVTIRKHLHTHL---FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
             +G +IH   IR H   +L    VA +++D Y +  R+  A K+FD +  K   SW+TL
Sbjct: 121 AGEGMQIHAALIR-HGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTL 179

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           ILGY     +  A++LF  +RE     D     +I+   +   L+E+GK    +M A ++
Sbjct: 180 ILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGK----QMHAYTI 235

Query: 291 K-------------PTEMHYAC-----------------------MVDLLGRAGLMEDAV 314
           K               +M+  C                       M+   G+ G+   AV
Sbjct: 236 KVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAV 295

Query: 315 KLIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEHLF---MLKPQHCGYYILLSN 368
           +L   +    +EPD+  + A+L AC   G ++ G      L     +KP+   +Y  + +
Sbjct: 296 ELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPK-VEHYACMVD 354

Query: 369 MYAEAGKWDEASKVRELM 386
           +    G+  EA  + E M
Sbjct: 355 LLGRGGRLKEAKNLIEKM 372


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 154/415 (37%), Positives = 247/415 (59%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y +     +A   F ++ + +++ W+ M++ FAQ+    KAL++  +M      PN  T
Sbjct: 191 LYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFT 250

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++VL A A    L   K IH   ++ GL+ D+F++NAL   YAKCGC+  +  +F  +S
Sbjct: 251 FSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALS 310

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R++VS+N +IV Y Q  D   +LSLFS M    ++   V++   + ACA LAA++ G +
Sbjct: 311 DRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQ 370

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H +T +      + V N+++D Y + G I  A  +FD L ++D  SWN +I GY M G 
Sbjct: 371 VHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGL 430

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AI +F  M+E     D ++++ +L+ACS+ G +++GK+YF  M+ D  ++P   HY 
Sbjct: 431 GVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYT 490

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMV L+GR+G ++ AVK I+++P EP   IW ALLGAC I+ +VELG  +A+ +  L+P+
Sbjct: 491 CMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPR 550

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               ++LLSN+YA A +W   + VR+ MK +  KK PG SW++ +  V  F V D
Sbjct: 551 DEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVAD 605



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 198/392 (50%), Gaps = 11/392 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+ S   + A  +F  I+ K++VSW  M+A++A+N    +AL+   +M +    PN+ T 
Sbjct: 91  YSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTF 150

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
             VL AC        GK +H  +++     DL++   L ++Y +CG  + A   F ++  
Sbjct: 151 AGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPK 210

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
            D + ++ +I  ++Q+    ++L +F +MR   +  +  +F   + A A++ ++   K I
Sbjct: 211 NDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTI 270

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  ++  L T +FV+N+++  Y + G I+ + ++F+ L  ++  SWNT+I+ Y  LG+ 
Sbjct: 271 HGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDG 330

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-C 299
           + A++LF  M    V    V+Y +IL AC+    +E G +    + A ++   ++     
Sbjct: 331 ERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQ-VHCLTAKTIYGQDVAVGNA 389

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           ++D+  + G ++DA  +   L +  D   W A++    ++G   LG  A +   ++K   
Sbjct: 390 LIDMYAKCGSIKDARFMFDMLDLR-DKVSWNAIICGYSMHG---LGVEAIKMFNLMKETK 445

Query: 360 CG----YYILLSNMYAEAGKWDEASKVRELMK 387
           C      ++ + +  +  G+ DE  +    MK
Sbjct: 446 CKPDELTFVGVLSACSNTGRLDEGKQYFTSMK 477



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 1/256 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + E+N VS+  ++  +AQ+   ++A +L   +       N    T VL       +
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
              G+ +H  +++ G   + F+  AL D Y+  GC+++A+ VF+ IS +D VS+  +I  
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y++    SE+L  FS+MR+ G K +  +F G + AC  L     GK +H   ++ +    
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           L+V   +L+ YTR G  D A + F  +P  D   W+ +I  +   G+ + A+ +F  MR 
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 253 DGVGYDPVSYIAILTA 268
             V  +  ++ ++L A
Sbjct: 242 AFVIPNQFTFSSVLQA 257


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 153/415 (36%), Positives = 257/415 (61%), Gaps = 4/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MYAK     EA  LF  +  K++VSW  +++ ++Q+    +AL L  +M +H  F PN  
Sbjct: 149 MYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKM-LHLGFQPNEF 207

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL+++L A   G     G+++HA  ++ G + ++ + ++L DMYA+   +  A+ +FN +
Sbjct: 208 TLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSL 267

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + ++ VS+N LI G+++  +    + LF +M   G +    ++  ++ ACA+  +++QGK
Sbjct: 268 AAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTY-SSVLACASSGSLEQGK 326

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H   I+       ++ N+++D Y +SG I  A K+F  L  +D  SWN++I GY   G
Sbjct: 327 WVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHG 386

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
               A+ LFE M +  V  + ++++++LTACSH GL+++G+ YF+ M+   ++    H+ 
Sbjct: 387 LGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHV 446

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            +VDLLGRAG + +A K I+ +P++P A +WGALLGACR++ N++LG +AAE +F L P 
Sbjct: 447 TVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPH 506

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             G ++LLSN+YA AG+  +A+KVR++MK    KK P CSWV+  +EV  FV ND
Sbjct: 507 DSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVAND 561



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 169/342 (49%), Gaps = 14/342 (4%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P     + +L  C     L+ G+ IHA I       DL L N + +MYAKCG L  AQ++
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDL 162

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ +  +D VS+ +LI GYSQ+   SE+L+LF +M  LG + +  +    + A     + 
Sbjct: 163 FDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSD 222

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G+++H  +++     ++ V +S+LD Y R   +  A  IF+ L  K+  SWN LI G+
Sbjct: 223 HHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGH 282

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              GE +  + LF  M   G      +Y ++L AC+  G +E+GK     +     +P  
Sbjct: 283 ARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIA 341

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF- 353
                ++D+  ++G ++DA K+ + L V+ D   W +++     Y    LGA A + LF 
Sbjct: 342 YIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISG---YAQHGLGAEALQ-LFE 396

Query: 354 -MLK----PQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390
            MLK    P    +  +L+   + +G  DE     ELMK  +
Sbjct: 397 QMLKAKVQPNEITFLSVLTAC-SHSGLLDEGQYYFELMKKHK 437


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 159/426 (37%), Positives = 253/426 (59%), Gaps = 8/426 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  R   A  +F+ +  +N+VSWNAM+A         K+L L + M    E P+  T
Sbjct: 149 MYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFT 208

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDL--FLTNALTDMYAKCGCLNLAQNVFN- 117
            T+ L AC     +R G +IHA +I +G    +   + +A+ D+YAKCG L  AQ VF+ 
Sbjct: 209 FTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDR 268

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMR--LLGMKHDVVSFMGAISACANLAAIK 175
           I  ++ +S++ LI G++Q  +  E++ LF ++R  +  +   V+S M  +   A+LA ++
Sbjct: 269 IEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIM--MGVFADLALVE 326

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           QGK++H   ++      + VANSI+D Y + G  + A ++F  + V++  SW  +I GYG
Sbjct: 327 QGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYG 386

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTE 294
             G  + AI+LF  M+ DG+  D V+Y+A+L+ACSH GL+ + ++YF  +     +KP  
Sbjct: 387 KHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNI 446

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYACMVD+LGRAG +++A  LI+N+ ++P+  IW  LL ACR++GN+E+G    E LF 
Sbjct: 447 EHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFR 506

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +   +   Y+++SN+YAEAG W E  +VR+L+K++  KK  G SWV+   E+  F   D 
Sbjct: 507 MDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDD 566

Query: 415 MKTFTP 420
               T 
Sbjct: 567 THPLTE 572



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 197/431 (45%), Gaps = 49/431 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K SR   A  +F  + E+N+VSW A++  + Q      +L L+ EM      PN  T
Sbjct: 48  MYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFT 107

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +  L AC     +  G +IH   ++ G  +   + NA  DMY+KCG + +A+ VFN + 
Sbjct: 108 FSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMP 167

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           FR+ VS+N +I G++   +  +SL LF  M+  G   D  +F   + AC  L AI+ G +
Sbjct: 168 FRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQ 227

Query: 180 IHGVTIRKHLHTHL--FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           IH   I +     +   +A++I+D Y + G +  A K+FD +  K+  SW+ LI G+   
Sbjct: 228 IHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQE 287

Query: 238 GEVDTAINLFEAMRE-----DGV------------------------------GYDPVSY 262
           G +  A++LF  +RE     DG                               G D    
Sbjct: 288 GNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVA 347

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP- 321
            +I+      GL E+ ++ F EMQ  +V    + +  M+   G+ GL E A+ L   +  
Sbjct: 348 NSIIDMYLKCGLTEEAERLFSEMQVRNV----VSWTVMITGYGKHGLGEKAIHLFNRMQL 403

Query: 322 --VEPDANIWGALLGACRIYGNVELGAWAAEHL---FMLKPQHCGYYILLSNMYAEAGKW 376
             +E D   + ALL AC   G +         L     +KP +  +Y  + ++   AG+ 
Sbjct: 404 DGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKP-NIEHYACMVDILGRAGQL 462

Query: 377 DEASKVRELMK 387
            EA  + E MK
Sbjct: 463 KEAKNLIENMK 473



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 144/285 (50%), Gaps = 4/285 (1%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L  +L  C++      G ++HA  +  G  FDL + N L DMY KC  ++LA +VF+   
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+  L+ GY Q  +   SL+L  EM   G+K +  +F  ++ AC  L  ++ G +
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG+ ++        V N+ +D Y++ GRI +A ++F+ +P ++  SWN +I G+   G 
Sbjct: 127 IHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGN 186

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM--QADSVKPTEMHY 297
              ++ LF+ M+  G   D  ++ + L AC   G +  G +    +  +   +    +  
Sbjct: 187 GRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIA 246

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
           + +VDL  + G + +A K+   +  + +   W AL+      GN+
Sbjct: 247 SAIVDLYAKCGYLFEAQKVFDRIE-QKNLISWSALIQGFAQEGNL 290


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 161/420 (38%), Positives = 255/420 (60%), Gaps = 9/420 (2%)

Query: 2   YAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NS 58
           Y+K+    EA  +F+ + E  ++ VSWN+M+  + Q++  LKAL L R+M +H  F  + 
Sbjct: 183 YSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDM-VHRGFEIDM 241

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC-LNLAQNVFN 117
            TL +VL   +    L  G + HA+ I+ G N +  + + L DMYAKCG  ++ ++ VF 
Sbjct: 242 FTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFE 301

Query: 118 -ISFRDEVSYNILIVGYSQTSDCS-ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
            I   D V +N +I GYSQ  + S E+L  F +M+  G   D  SF+ AISAC+NL++  
Sbjct: 302 EICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPS 361

Query: 176 QGKEIHGVTIRKHLHT-HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           QGK+ H + ++  + +  + V N+++  Y++ G +  A K+F  +P  ++ + N++I GY
Sbjct: 362 QGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGY 421

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPT 293
              G    ++NLFE M    +    ++ ++IL+AC+H G VE+GKKYF+ M+    ++P 
Sbjct: 422 AQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPE 481

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY+CM+DLLGRAG + +A +LI  +P  P +  W ALLGACR YGN+EL   AA    
Sbjct: 482 AEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFL 541

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            L+P +   YI+L++MY+ A KW+EA+++R+LM+ R  +K PGCSW++    V  FV  D
Sbjct: 542 QLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAED 601



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 189/428 (44%), Gaps = 46/428 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK S    A +LF  I + ++VS+N ++  +A     L AL L  EM       +  T 
Sbjct: 84  YAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTF 143

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---I 118
           + V+ AC     L   +++H+     G +  + + N+L   Y+K G L  A+ VFN    
Sbjct: 144 SGVITACCNHVGLI--RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGE 201

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RDEVS+N +IV Y Q     ++L+L+ +M   G + D+ +    ++  + +  +  G 
Sbjct: 202 EVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGL 261

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGR-IDLANKIFDCLPVKDSASWNTLILGYGML 237
           + H   I+   + +  V + ++D Y + G  +  + K+F+ +   D   WNT+I GY   
Sbjct: 262 QFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQN 321

Query: 238 GEVDT-AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            E+   A+  F  M+  G   D  S++  ++ACS+     +GK++        +   ++ 
Sbjct: 322 KELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQIS 381

Query: 297 Y-ACMVDLLGRAGLMEDAVKLIKNLP---------------------------------- 321
               +V +  + G ++DA KL + +P                                  
Sbjct: 382 VNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAAS 441

Query: 322 VEPDANIWGALLGACRIYGNVELGAW---AAEHLFMLKPQHCGYYILLSNMYAEAGKWDE 378
           + P +    ++L AC   G VE G       + +F ++P+   +Y  + ++   AGK  E
Sbjct: 442 IAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPE-AEHYSCMIDLLGRAGKLSE 500

Query: 379 ASKVRELM 386
           A ++ + M
Sbjct: 501 AERLIDTM 508



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 145/339 (42%), Gaps = 42/339 (12%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
           +   +L +C     L  GK +H   ++  +    +L+N    +Y+KC  L  A + FN  
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQT 69

Query: 118 -----ISFR-------------------------DEVSYNILIVGYSQTSDCSESLSLFS 147
                 SF                          D VS+N LI  Y+   D   +LSLF 
Sbjct: 70  HEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFG 129

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           EMR +G+  D  +F G I+AC N   +   +++H +       +++ V NS+L +Y+++G
Sbjct: 130 EMREMGLVMDGFTFSGVITACCNHVGLI--RQLHSLAFSSGFDSYVSVKNSLLTYYSKNG 187

Query: 208 RIDLANKIFDCL--PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
            ++ A  +F+ +   V+D  SWN++I+ YG       A+ L+  M   G   D  +  ++
Sbjct: 188 ILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASV 247

Query: 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL-MEDAVKLIKNLPVEP 324
           LT  S    +  G ++  +             + ++D+  + G  M ++ K+ + +    
Sbjct: 248 LTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEI-CGS 306

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY 363
           D  +W  ++       N EL   A E    +  Q  GY+
Sbjct: 307 DLVVWNTMISG--YSQNKELSVEALECFRQM--QRAGYW 341



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  LF  + + N V+ N+++A +AQ+ +  ++L L  +M   +  P S+T
Sbjct: 389 MYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSIT 448

Query: 61  LTNVLPACARGHFLRPGKE 79
           L ++L ACA    +  GK+
Sbjct: 449 LVSILSACAHTGRVEEGKK 467


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 158/416 (37%), Positives = 245/416 (58%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA       A +LF  +  +N V W +M++ + +N    +AL L ++M      P+ VT
Sbjct: 123 MYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVT 182

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  ++ ACA    L  G ++H+ I    +     L +AL +MYAKCG L  A+ VF+ +S
Sbjct: 183 MATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLS 242

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRL-LGMKHDVVSFMGAISACANLAAIKQGK 178
            +D  +++ LI GY + +  +E+L LF E+     M+ + V+ +  ISACA L  ++ G+
Sbjct: 243 DKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGR 302

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H    R      + + NS++D +++ G ID A +IFD +  KD  SWN+++ G+ + G
Sbjct: 303 WVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHG 362

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHY 297
               A+  F  M+   +  D +++I +LTACSH GLV++GKK F E++A   V+    HY
Sbjct: 363 LGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHY 422

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLL RAGL+ +A + I+ +P++PD  IWG++LGACR+Y N+ELG  AA  L  L+P
Sbjct: 423 GCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEP 482

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            + G YILLSN+YA+   W+E  KVRELM  +  +K PGCS V   +    F+  D
Sbjct: 483 TNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGD 538



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 166/333 (49%), Gaps = 4/333 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSVTLTNVLPACA 69
           A  +F +  E ++++WN+M+  F  + +  +ALQ   EM   +   P+  T  ++L  CA
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNI 128
                + GK +H ++++  L+ DL++   L +MYA CG L  A+ +F  +  R++V +  
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +I GY +    +E+L L+ +M   G   D V+    +SACA L  +  G ++H       
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF- 247
           +     + +++++ Y + G +  A ++FD L  KD  +W+ LI GY        A+ LF 
Sbjct: 211 MKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFR 270

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
           E      +  + V+ +A+++AC+  G +E G+   D +       +      ++D+  + 
Sbjct: 271 EVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKC 330

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           G ++ A ++  ++  + D   W +++    ++G
Sbjct: 331 GDIDAAKRIFDSMSYK-DLISWNSMVNGFALHG 362


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 153/423 (36%), Positives = 249/423 (58%), Gaps = 3/423 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSV 59
           MYAK      A  +F  +  +N V+W+A++  F       +A  L + M      F +  
Sbjct: 167 MYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT 226

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           ++ + L ACA    LR G+++HA + + G++ DL   N+L  MYAK G ++ A  +F+ +
Sbjct: 227 SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEM 286

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + +D VSY+ L+ GY Q     E+  +F +M+   ++ D  + +  I AC++LAA++ G+
Sbjct: 287 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 346

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             HG  I + L +   + N+++D Y + GRIDL+ ++F+ +P +D  SWNT+I GYG+ G
Sbjct: 347 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHG 406

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               A  LF  M   G   D V++I +L+ACSH GLV +GK +F  M     + P   HY
Sbjct: 407 LGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHY 466

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLL R G +++A + I+++P+  D  +W ALLGACR+Y N++LG   +  +  L P
Sbjct: 467 ICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGP 526

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKT 417
           +  G ++LLSN+Y+ AG++DEA++VR + K +  KK+PGCSW++    +  FV  D+   
Sbjct: 527 EGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHP 586

Query: 418 FTP 420
            +P
Sbjct: 587 QSP 589



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 211/440 (47%), Gaps = 52/440 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQ--LVREMPIHNEFPNS 58
           MY K +   +A+++F  +  +++V+WNAM+A +A + +   A+   L  +M +H   PN+
Sbjct: 54  MYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNA 113

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD----------LFLTNALTDMYAKCGC 108
            TL  +LP  A+   L  G  +HA  IR  L+ +          + L  AL DMYAKCG 
Sbjct: 114 STLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGS 173

Query: 109 LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-DVVSFMGAIS 166
           L  A+ VF+ +  R+EV+++ LI G+   S  +++  LF  M   G+      S   A+ 
Sbjct: 174 LLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALR 233

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
           ACA+L  ++ G+++H +  +  +H  L   NS+L  Y ++G ID A  +FD + VKD+ S
Sbjct: 234 ACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 293

Query: 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM- 285
           ++ L+ GY   G  + A  +F+ M+   V  D  + ++++ ACSH   ++ G+     + 
Sbjct: 294 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 353

Query: 286 ----------------------------QADSVKPTE--MHYACMVDLLGRAGLMEDAVK 315
                                       Q  ++ P+   + +  M+   G  GL ++A  
Sbjct: 354 IRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATA 413

Query: 316 L---IKNLPVEPDANIWGALLGACRIYGNVELGA-W--AAEHLFMLKPQHCGYYILLSNM 369
           L   + NL   PD   +  LL AC   G V  G  W     H + L P+   +YI + ++
Sbjct: 414 LFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPR-MEHYICMVDL 472

Query: 370 YAEAGKWDEASKVRELMKSR 389
            +  G  DEA +  + M  R
Sbjct: 473 LSRGGFLDEAYEFIQSMPLR 492



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 177/405 (43%), Gaps = 83/405 (20%)

Query: 52  HNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL 111
           H   PN+ T    L AC+       G+ IH   I  GL  DLF++ AL DMY KC CL  
Sbjct: 4   HRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPD 63

Query: 112 AQNVF-NISFRDEVSYNILIVGYSQTSDCSESLS--LFSEMRLLGMKHDVVSFMGAISAC 168
           A ++F  +  RD V++N ++ GY+       +++  L  +M++  ++ +  + +  +   
Sbjct: 64  AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 123

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTH----------LFVANSILDFYTRSGRIDLANKIFDC 218
           A   A+ QG  +H   IR  LH +          + +  ++LD Y + G +  A ++FD 
Sbjct: 124 AQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 183

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTAC-------- 269
           +P ++  +W+ LI G+ +   +  A  LF+AM   G+ +  P S  + L AC        
Sbjct: 184 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 243

Query: 270 ---------------------------SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
                                      +  GL+++    FDEM   +VK T + Y+ +V 
Sbjct: 244 GEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEM---AVKDT-VSYSALVS 299

Query: 303 LLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
              + G  E+A  + K +    VEPDA    +L+ AC              HL  L+   
Sbjct: 300 GYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC-------------SHLAALQHGR 346

Query: 360 C--GYYIL------------LSNMYAEAGKWDEASKVRELMKSRE 390
           C  G  I+            L +MYA+ G+ D + +V  +M SR+
Sbjct: 347 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD 391


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 152/415 (36%), Positives = 247/415 (59%), Gaps = 3/415 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K    + A  +F      ++V + AM++ +  N L + +L++ R +      PN +TL
Sbjct: 385 YFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITL 444

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++LP       L+ G+E+H  II+KG +    +  A+ DMYAKCG +NLA  +F  +S 
Sbjct: 445 VSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSK 504

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VS+N +I   +Q+ + S ++ +F +M + G+ +D VS   A+SACANL +   GK I
Sbjct: 505 RDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAI 564

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  I+  L + ++  ++++D Y + G +  A  +F  +  K+  SWN++I   G  G++
Sbjct: 565 HGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKL 624

Query: 241 DTAINLFEAMRE-DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
             ++ LF  M E  G+  D ++++ I+++C H G V++G ++F  M  D  ++P + HYA
Sbjct: 625 KDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYA 684

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDL GRAG + +A + +K++P  PDA +WG LLGACR++ NVEL   A+  L  L P 
Sbjct: 685 CVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPS 744

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + GYY+L+SN +A A +W+  +KVR LMK RE +K PG SW++       FV  D
Sbjct: 745 NSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGD 799



 Score =  171 bits (432), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 183/344 (53%), Gaps = 2/344 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  R  +AS LF  ++  + V+WN M++ + Q+ L  ++L    EM      P+++T
Sbjct: 283 MYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAIT 342

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +++LP+ ++   L   K+IH  I+R  ++ D+FLT+AL D Y KC  +++AQN+F+  +
Sbjct: 343 FSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCN 402

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V +  +I GY       +SL +F  +  + +  + ++ +  +     L A+K G+E
Sbjct: 403 SVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRE 462

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  I+K       +  +++D Y + GR++LA +IF+ L  +D  SWN++I        
Sbjct: 463 LHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDN 522

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              AI++F  M   G+ YD VS  A L+AC++      GK     M   S+       + 
Sbjct: 523 PSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSEST 582

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           ++D+  + G ++ A+ + K +  E +   W +++ AC  +G ++
Sbjct: 583 LIDMYAKCGNLKAAMNVFKTMK-EKNIVSWNSIIAACGNHGKLK 625



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 134/288 (46%), Gaps = 9/288 (3%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL-NLAQNVFNIS 119
           L+ +L AC+  + LR GK++HA +I   ++ D +    +  MYA CG   +  +  + + 
Sbjct: 38  LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLD 97

Query: 120 FRDEV--SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
            R      +N +I  + +    +++L+ + +M   G+  DV +F   + AC  L   K  
Sbjct: 98  LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGI 157

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
             +        +  + FVA+S++  Y   G+ID+ +K+FD +  KD   WN ++ GY   
Sbjct: 158 DFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKC 217

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G +D+ I  F  MR D +  + V++  +L+ C+   L++ G +    +    V       
Sbjct: 218 GALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIK 277

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
             ++ +  + G  +DA KL + +    D   W      C I G V+ G
Sbjct: 278 NSLLSMYSKCGRFDDASKLFRMMS-RADTVTWN-----CMISGYVQSG 319



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 138/273 (50%), Gaps = 3/273 (1%)

Query: 1   MYAKSSRPAEASYLFH--NIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MYA     ++   +F+  ++   +I  WN+++++F +N L  +AL    +M      P+ 
Sbjct: 79  MYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDV 138

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T   ++ AC      +    +   +   G++ + F+ ++L   Y + G +++   +F+ 
Sbjct: 139 STFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDR 198

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  +D V +N+++ GY++       +  FS MR+  +  + V+F   +S CA+   I  G
Sbjct: 199 VLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLG 258

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            ++HG+ +   +     + NS+L  Y++ GR D A+K+F  +   D+ +WN +I GY   
Sbjct: 259 VQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQS 318

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
           G ++ ++  F  M   GV  D +++ ++L + S
Sbjct: 319 GLMEESLTFFYEMISSGVLPDAITFSSLLPSVS 351



 Score = 38.5 bits (88), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MYAK      A  +F  + EKNIVSWN+++A    +     +L L  EM   +   P+ +
Sbjct: 586 MYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQI 645

Query: 60  TLTNVLPAC 68
           T   ++ +C
Sbjct: 646 TFLEIISSC 654


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 159/424 (37%), Positives = 247/424 (58%), Gaps = 4/424 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  R  EA+ +F  +  +N++SWNAM+A +       KAL L ++M     F +  T
Sbjct: 117 MYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFT 176

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDL--FLTNALTDMYAKCGCLNLAQNVFN- 117
            T+ L AC+    ++ G +IHA +I  G  + +   +  AL D+Y KCG L +A+ VF+ 
Sbjct: 177 FTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSH 236

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           I  +  +S+  LI+GY+Q  + +ES+ LF ++R   ++ D       +   A+ A ++QG
Sbjct: 237 IEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQG 296

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K++H   I+      + V NSILD Y + G I+ A ++F  +P ++  SW  +I GYG  
Sbjct: 297 KQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKH 356

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMH 296
           G    AI LF+ M+ D    D V+Y+A+L  CSH GLVEKG++YF  + +   +K    H
Sbjct: 357 GLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEH 416

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YACMVDLLGRAG +++A  L+ ++P+E +  IW  LL ACR++G++ELG      L  L 
Sbjct: 417 YACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLD 476

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMK 416
            ++   Y+++SN+YA+AG W E  ++REL+KS++ KK  G SWV+   EV  F   D   
Sbjct: 477 SENPVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTH 536

Query: 417 TFTP 420
             T 
Sbjct: 537 PLTE 540



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 202/432 (46%), Gaps = 53/432 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  R   A  +F  + ++N+VSW A++    QN   L++L L  +M +    PN  T
Sbjct: 16  MYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDFT 75

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
            +  L AC   + L  G++IH   ++ G +    + N++ DMY+KCG +N A  +F +  
Sbjct: 76  FSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMP 135

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ +S+N +I GY+    C ++L LF +M+ +G   D  +F   + AC++L AIK+G +
Sbjct: 136 VRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQ 195

Query: 180 IHGVTIRKHL--HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           IH   I        +  VA +++D Y + G++ +A ++F  +  K   SW  LILGY   
Sbjct: 196 IHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQE 255

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK------------------ 279
           G +  ++ LF  +RE  +  D     +++   +   LV++GK                  
Sbjct: 256 GNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVC 315

Query: 280 -----------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
                            + F EM A +V    + +  M+   G+ GL ++A++L   + +
Sbjct: 316 NSILDMYLKCGMINEAERLFSEMPARNV----ISWTVMITGYGKHGLGKEAIRLFDEMQL 371

Query: 323 ---EPDANIWGALLGACRIYGNVELGA-----WAAEHLFMLKPQHCGYYILLSNMYAEAG 374
              EPD   + A+L  C   G VE G        + H    + +H   Y  + ++   AG
Sbjct: 372 DSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEH---YACMVDLLGRAG 428

Query: 375 KWDEASKVRELM 386
           +  EA  + + M
Sbjct: 429 RLKEAKNLVDSM 440



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 114/194 (58%), Gaps = 1/194 (0%)

Query: 88  GLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF-RDEVSYNILIVGYSQTSDCSESLSLF 146
           G  FDL L+N L  MY KCG L +A +VF+    R+ VS+  L+ G+ Q  +  ESL LF
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
           S+M L G+K +  +F   + AC  L  +  G++IH + ++        V NSI+D Y++ 
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKC 121

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           GRI+ A  +F+ +PV++  SWN +I GY + G  + A+ LF+ M+E G   D  ++ + L
Sbjct: 122 GRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTL 181

Query: 267 TACSHGGLVEKGKK 280
            ACS  G +++G +
Sbjct: 182 KACSDLGAIKEGNQ 195



 Score = 45.4 bits (106), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 68/151 (45%), Gaps = 1/151 (0%)

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           L ++N ++  Y + GR+ +A  +FD +  ++  SW  L+ G+   G    ++ LF  M  
Sbjct: 7   LMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGL 66

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
            GV  +  ++   L AC     ++ G++  D           +    ++D+  + G + +
Sbjct: 67  SGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINE 126

Query: 313 AVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           A  + + +PV    + W A++    + G  E
Sbjct: 127 AACMFEVMPVRNLIS-WNAMIAGYTVAGFCE 156


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 148/417 (35%), Positives = 251/417 (60%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIA--EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           +YAK  R   A  +F  +   E+ IVSW A+V+ +AQN   ++AL++   M   +  P+ 
Sbjct: 163 LYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDW 222

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           V L +VL A      L+ G+ IHA +++ GL  +  L  +L  MYAKCG +  A+ +F+ 
Sbjct: 223 VALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDK 282

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +   + + +N +I GY++     E++ +F EM    ++ D +S   AISACA + +++Q 
Sbjct: 283 MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA 342

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + ++    R      +F++++++D + + G ++ A  +FD    +D   W+ +I+GYG+ 
Sbjct: 343 RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLH 402

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G    AI+L+ AM   GV  + V+++ +L AC+H G+V +G  +F+ M    + P + HY
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHY 462

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           AC++DLLGRAG ++ A ++IK +PV+P   +WGALL AC+ + +VELG +AA+ LF + P
Sbjct: 463 ACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDP 522

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            + G+Y+ LSN+YA A  WD  ++VR  MK +   K+ GCSWV+ R  ++ F V D+
Sbjct: 523 SNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDK 579



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 169/333 (50%), Gaps = 4/333 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F ++    I  WNA++  +++N     AL +   M +    P+S T  ++L AC+ 
Sbjct: 72  ARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSG 131

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---ISFRDEVSYN 127
              L+ G+ +HA++ R G + D+F+ N L  +YAKC  L  A+ VF    +  R  VS+ 
Sbjct: 132 LSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWT 191

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            ++  Y+Q  +  E+L +FS MR + +K D V+ +  ++A   L  +KQG+ IH   ++ 
Sbjct: 192 AIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKM 251

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            L     +  S+   Y + G++  A  +FD +   +   WN +I GY   G    AI++F
Sbjct: 252 GLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMF 311

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
             M    V  D +S  + ++AC+  G +E+ +  ++ +     +      + ++D+  + 
Sbjct: 312 HEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKC 371

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           G +E A +L+ +  ++ D  +W A++    ++G
Sbjct: 372 GSVEGA-RLVFDRTLDRDVVVWSAMIVGYGLHG 403



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 137/307 (44%), Gaps = 45/307 (14%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEV-SYNILIVGYSQT 136
           K+IHAR++  GL F  FL   L    +  G +  A+ VF+   R ++  +N +I GYS+ 
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
           +   ++L ++S M+L  +  D  +F   + AC+ L+ ++ G+ +H    R      +FV 
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSA--SWNTLILGYGMLGEVDTAINLFEAMREDG 254
           N ++  Y +  R+  A  +F+ LP+ +    SW  ++  Y   GE   A+ +F  MR+  
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMD 217

Query: 255 VGYDPVSYIAILTACS-----------HGGLVEKG------------------------K 279
           V  D V+ +++L A +           H  +V+ G                        K
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK---NLPVEPDANIWGALLGAC 336
             FD+M++    P  + +  M+    + G   +A+ +     N  V PD     + + AC
Sbjct: 278 ILFDKMKS----PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISAC 333

Query: 337 RIYGNVE 343
              G++E
Sbjct: 334 AQVGSLE 340



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 46/104 (44%)

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           Q K+IH   +   L    F+   ++   +  G I  A ++FD LP      WN +I GY 
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
                  A+ ++  M+   V  D  ++  +L ACS    ++ G+
Sbjct: 96  RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 252/441 (57%), Gaps = 33/441 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP----- 56
           Y K +R  +A  +F  + E++ VSWN M++ +AQN   L+A +L  E P+ + F      
Sbjct: 214 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMV 273

Query: 57  ----------------------NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF 94
                                 NSV+   ++    +   +   +E+   +  + ++    
Sbjct: 274 SGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSS--- 330

Query: 95  LTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
             N +   YA+ G +  A+N F+ +  RD +S+  +I GY+Q+    E+L LF EM+  G
Sbjct: 331 -WNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 389

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
            + +  +F   +S CA +AA++ GK++HG  ++  L +  +V N++L  Y + G ID A 
Sbjct: 390 ERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAY 449

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
            +F+ +  K+  SWNT+I GY   G    A+ LFE+M++ G+  D V+ + +L+ACSH G
Sbjct: 450 IVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTG 509

Query: 274 LVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
           LV+KG +YF  M  D  +     HY CM+DLLGRAG ++DA  L+KN+P EPDA  WGAL
Sbjct: 510 LVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGAL 569

Query: 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392
           LGA RI+GN ELG  AA+ +F ++P + G Y+LLSN+YA +G+W +  ++R  M+ R  K
Sbjct: 570 LGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVK 629

Query: 393 KNPGCSWVQTRDEVQDFVVND 413
           K PG SWV+ ++++  F V D
Sbjct: 630 KVPGYSWVEVQNKIHTFTVGD 650



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 142/280 (50%), Gaps = 23/280 (8%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  + E+++VSWNAM++ +AQN    +A ++  EMP      NS++   +L A   
Sbjct: 130 ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPC----KNSISWNGMLAA--- 182

Query: 71  GHFLRPGK-EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
             +++ G+ E   R+     +++L   N +   Y K   L  A+ +F+ +  RDEVS+N 
Sbjct: 183 --YVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNT 240

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +I GY+Q  +  E+  LF E  +     DV ++   +S       + + + +      K+
Sbjct: 241 MISGYAQNGELLEAQRLFEESPV----RDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKN 296

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
             +     N+I+  Y +  R+D A ++F+ +P ++ +SWNT+I GY   G++  A N F+
Sbjct: 297 SVSW----NAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFD 352

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
            M +     D +S+ AI+   +  G  E+    F EM+ D
Sbjct: 353 RMPQ----RDSISWAAIIAGYAQSGYGEEALHLFVEMKRD 388



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 182/412 (44%), Gaps = 58/412 (14%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           LF+++  ++ +SWNAM++    N     A QL  +MP      + V+   ++  C R   
Sbjct: 71  LFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTR----DLVSWNVMISGCVRYRN 126

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           LR  + +  ++  +    D+   NA+   YA+ G +  A+ +F+ +  ++ +S+N ++  
Sbjct: 127 LRAARLLFDQMPER----DVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAA 182

Query: 133 YSQTSDCSESLSLFSEM-------------------RLLGMK--------HDVVSFMGAI 165
           Y Q     ++  LF                      RL+  +         D VS+   I
Sbjct: 183 YVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMI 242

Query: 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
           S  A    + + + +      +     +F   +++  Y ++G +D A ++FD +P K+S 
Sbjct: 243 SGYAQNGELLEAQRL----FEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSV 298

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           SWN +I GY     +D A  LFEAM    V     S+  ++T  +  G + + + +FD M
Sbjct: 299 SWNAIIAGYVQCKRMDQARELFEAMPCQNVS----SWNTMITGYAQNGDIAQARNFFDRM 354

Query: 286 -QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD---ANIWGALLGACRIYGN 341
            Q DS+      +A ++    ++G  E+A+ L   +  + +    + + + L  C     
Sbjct: 355 PQRDSIS-----WAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAA 409

Query: 342 VELGAWAAEHLFMLKPQ-HCGYYI--LLSNMYAEAGKWDEASKVRELMKSRE 390
           +ELG     H  ++K     G Y+   L  MY + G  D+A  V E ++ +E
Sbjct: 410 LELGKQV--HGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKE 459



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 159/363 (43%), Gaps = 31/363 (8%)

Query: 19  AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78
            + +IV WN  + N  +N     AL+L   MP      +S++   ++  C         +
Sbjct: 45  TDADIVKWNIAITNHMRNGQCDSALRLFNSMPRR----SSISWNAMISGCLSNDKFYLAR 100

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
           ++  ++  +    DL   N +     +   L  A+ +F+ +  RD VS+N ++ GY+Q  
Sbjct: 101 QLFEKMPTR----DLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNG 156

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
              E+  +F EM       + +S+ G ++A      I+  + +            L   N
Sbjct: 157 YVKEAKEIFDEMPC----KNSISWNGMLAAYVQNGRIEDARRL----FESKADWELISWN 208

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
            ++  Y +  R+  A  IFD +P +D  SWNT+I GY   GE+  A  LFE   E  V  
Sbjct: 209 CMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFE---ESPV-R 264

Query: 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317
           D  ++ A+++     G++++ ++ FD M     +   + +  ++    +   M+ A +L 
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEARRVFDGMP----EKNSVSWNAIIAGYVQCKRMDQARELF 320

Query: 318 KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY-YILLSNMYAEAGKW 376
           + +P + + + W  ++      G++      A + F   PQ     +  +   YA++G  
Sbjct: 321 EAMPCQ-NVSSWNTMITGYAQNGDIA----QARNFFDRMPQRDSISWAAIIAGYAQSGYG 375

Query: 377 DEA 379
           +EA
Sbjct: 376 EEA 378



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 2/143 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  I EK +VSWN M+A +A++    +AL L   M      P+ VT
Sbjct: 438 MYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVT 497

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           +  VL AC+    +  G E    + +  G+  +      + D+  + G L+ AQN+  N+
Sbjct: 498 MVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNM 557

Query: 119 SFRDEVSYNILIVGYSQTSDCSE 141
            F  + +    ++G S+    +E
Sbjct: 558 PFEPDAATWGALLGASRIHGNTE 580


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 153/423 (36%), Positives = 249/423 (58%), Gaps = 3/423 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSV 59
           MYAK      A  +F  +  +N V+W+A++  F       +A  L + M      F +  
Sbjct: 167 MYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT 226

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           ++ + L ACA    LR G+++HA + + G++ DL   N+L  MYAK G ++ A  +F+ +
Sbjct: 227 SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEM 286

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + +D VSY+ L+ GY Q     E+  +F +M+   ++ D  + +  I AC++LAA++ G+
Sbjct: 287 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 346

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             HG  I + L +   + N+++D Y + GRIDL+ ++F+ +P +D  SWNT+I GYG+ G
Sbjct: 347 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHG 406

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               A  LF  M   G   D V++I +L+ACSH GLV +GK +F  M     + P   HY
Sbjct: 407 LGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHY 466

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLL R G +++A + I+++P+  D  +W ALLGACR+Y N++LG   +  +  L P
Sbjct: 467 ICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGP 526

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKT 417
           +  G ++LLSN+Y+ AG++DEA++VR + K +  KK+PGCSW++    +  FV  D+   
Sbjct: 527 EGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHP 586

Query: 418 FTP 420
            +P
Sbjct: 587 QSP 589



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 211/440 (47%), Gaps = 52/440 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQ--LVREMPIHNEFPNS 58
           MY K +   +A+++F  +  +++V+WNAM+A +A + +   A+   L  +M +H   PN+
Sbjct: 54  MYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNA 113

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD----------LFLTNALTDMYAKCGC 108
            TL  +LP  A+   L  G  +HA  IR  L+ +          + L  AL DMYAKCG 
Sbjct: 114 STLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGS 173

Query: 109 LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-DVVSFMGAIS 166
           L  A+ VF+ +  R+EV+++ LI G+   S  +++  LF  M   G+      S   A+ 
Sbjct: 174 LLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALR 233

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
           ACA+L  ++ G+++H +  +  +H  L   NS+L  Y ++G ID A  +FD + VKD+ S
Sbjct: 234 ACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 293

Query: 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM- 285
           ++ L+ GY   G  + A  +F+ M+   V  D  + ++++ ACSH   ++ G+     + 
Sbjct: 294 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 353

Query: 286 ----------------------------QADSVKPTE--MHYACMVDLLGRAGLMEDAVK 315
                                       Q  ++ P+   + +  M+   G  GL ++A  
Sbjct: 354 IRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATA 413

Query: 316 L---IKNLPVEPDANIWGALLGACRIYGNVELGA-W--AAEHLFMLKPQHCGYYILLSNM 369
           L   + NL   PD   +  LL AC   G V  G  W     H + L P+   +YI + ++
Sbjct: 414 LFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPR-MEHYICMVDL 472

Query: 370 YAEAGKWDEASKVRELMKSR 389
            +  G  DEA +  + M  R
Sbjct: 473 LSRGGFLDEAYEFIQSMPLR 492



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 177/405 (43%), Gaps = 83/405 (20%)

Query: 52  HNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL 111
           H   PN+ T    L AC+       G+ IH   I  GL  DLF++ AL DMY KC CL  
Sbjct: 4   HRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPD 63

Query: 112 AQNVF-NISFRDEVSYNILIVGYSQTSDCSESLS--LFSEMRLLGMKHDVVSFMGAISAC 168
           A ++F  +  RD V++N ++ GY+       +++  L  +M++  ++ +  + +  +   
Sbjct: 64  AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 123

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTH----------LFVANSILDFYTRSGRIDLANKIFDC 218
           A   A+ QG  +H   IR  LH +          + +  ++LD Y + G +  A ++FD 
Sbjct: 124 AQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 183

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTAC-------- 269
           +P ++  +W+ LI G+ +   +  A  LF+AM   G+ +  P S  + L AC        
Sbjct: 184 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 243

Query: 270 ---------------------------SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
                                      +  GL+++    FDEM   +VK T + Y+ +V 
Sbjct: 244 GEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEM---AVKDT-VSYSALVS 299

Query: 303 LLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
              + G  E+A  + K +    VEPDA    +L+ AC              HL  L+   
Sbjct: 300 GYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC-------------SHLAALQHGR 346

Query: 360 C--GYYIL------------LSNMYAEAGKWDEASKVRELMKSRE 390
           C  G  I+            L +MYA+ G+ D + +V  +M SR+
Sbjct: 347 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD 391


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 150/413 (36%), Positives = 250/413 (60%), Gaps = 3/413 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           MYAK      A  +F+ + +KN V W+AM+  +  +     AL L  +M  I+   P   
Sbjct: 254 MYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPA 313

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL  +L ACA+   L+ GK++H  +I+ G++ D  + N+L  MYAKCG ++ A    + +
Sbjct: 314 TLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEM 373

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D VSY+ +I G  Q     ++L +F +M+  G+   + + +  + AC++LAA++ G 
Sbjct: 374 IAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGT 433

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             HG T+ +       + N+I+D Y++ G+I ++ +IFD +  +D  SWNT+I+GYG+ G
Sbjct: 434 CCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHG 493

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               A++LF+ ++  G+  D V+ IA+L+ACSH GLV +GK +F  M Q  ++KP   HY
Sbjct: 494 LCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHY 553

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLL RAG +++A   I+ +P  P+  IWGALL ACR + N+E+G   ++ + +L P
Sbjct: 554 ICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGP 613

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
           +  G ++L+SN+Y+  G+WD+A+ +R + +    KK+PGCSWV+    +  F+
Sbjct: 614 EGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFI 666



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 205/424 (48%), Gaps = 50/424 (11%)

Query: 1   MYAKSSRPAEASYLFHNIA--EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MYAK     +A  LF++I+  +++IV+WNAM+A F+ + L  + +  V +M      PNS
Sbjct: 151 MYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNS 210

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            TL ++LP   + + L  GK IHA  IR     ++ L  AL DMYAKC  L  A+ +FN 
Sbjct: 211 STLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNT 270

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMR-LLGMKHDVVSFMGAISACANLAAIKQ 176
           ++ +++V ++ +I GY      S++L+L+ +M  + G+     +    + ACA L  +K+
Sbjct: 271 VNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKR 330

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK++H   I+  +     V NS++  Y + G +D A    D +  KD+ S++ +I G   
Sbjct: 331 GKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQ 390

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG------------------ 278
            G  + A+ +F  M+  G+     + IA+L ACSH   ++ G                  
Sbjct: 391 NGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSI 450

Query: 279 -----------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
                            ++ FD MQ   +    + +  M+   G  GL  +A+ L + L 
Sbjct: 451 CNAIIDMYSKCGKITISREIFDRMQNRDI----ISWNTMIIGYGIHGLCVEALSLFQELQ 506

Query: 322 ---VEPDANIWGALLGACRIYGNVELGAW---AAEHLFMLKPQHCGYYILLSNMYAEAGK 375
              ++PD     A+L AC   G V  G +   +    F +KP+   +YI + ++ A AG 
Sbjct: 507 ALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPR-MAHYICMVDLLARAGN 565

Query: 376 WDEA 379
            DEA
Sbjct: 566 LDEA 569



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 164/337 (48%), Gaps = 5/337 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A ++F  I + ++V WN M+  +A +    +++ L   M      P + T   +L AC+ 
Sbjct: 60  ARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSS 119

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF--RDEVSYN 127
              L+ G+ IH      GL+ DL+++ AL  MYAKCG L  AQ +FN IS   RD V++N
Sbjct: 120 LQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWN 179

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            +I  +S  +  ++++   ++M+  G+  +  + +  +       A+ QGK IH   IR 
Sbjct: 180 AMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRN 239

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
               ++ +  ++LD Y +   +  A KIF+ +  K+   W+ +I GY +   +  A+ L+
Sbjct: 240 FFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALY 299

Query: 248 EAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
           + M    G+   P +   +L AC+    +++GKK    M    +         ++ +  +
Sbjct: 300 DDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAK 359

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            G+M++AV  +  + +  D   + A++  C   G  E
Sbjct: 360 CGIMDNAVGFLDEM-IAKDTVSYSAIISGCVQNGYAE 395



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 1/141 (0%)

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
           A  +  ++     I LA  +FD +P      WN +I  Y   G    +I L+  M + GV
Sbjct: 44  ATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGV 103

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
                ++  +L ACS    ++ G+          +         ++ +  + G +  A  
Sbjct: 104 TPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQT 163

Query: 316 LIKNLPVEP-DANIWGALLGA 335
           L  ++  +  D   W A++ A
Sbjct: 164 LFNSISHQDRDIVAWNAMIAA 184


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 153/423 (36%), Positives = 250/423 (59%), Gaps = 3/423 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSV 59
           MYAK      A  +F  +  +N V+W+A++  F       +A  L + M      F +  
Sbjct: 282 MYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT 341

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           ++ + L ACA    LR G+++HA + + G++ DL   N+L  MYAK G ++ A  +F+ +
Sbjct: 342 SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEM 401

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + +D VSY+ L+ GY Q     E+  +F +M+   ++ D  + +  I AC++LAA++ G+
Sbjct: 402 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 461

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             HG  I + L +   + N+++D Y + GRIDL+ ++F+ +P +D  SWNT+I GYG+ G
Sbjct: 462 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHG 521

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A  LF  M   G   D V++I +L+ACSH GLV +GK +F  M+    + P   HY
Sbjct: 522 LGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHY 581

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLL R G +++A + I+++P+  D  +W ALLGACR+Y N++LG   +  +  L P
Sbjct: 582 ICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGP 641

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKT 417
           +  G ++LLSN+Y+ AG++DEA++VR + K +  KK+PGCSW++    +  FV  D+   
Sbjct: 642 EGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHP 701

Query: 418 FTP 420
            +P
Sbjct: 702 QSP 704



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 211/440 (47%), Gaps = 52/440 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQ--LVREMPIHNEFPNS 58
           MY K +   +A+++F  +  +++V+WNAM+A +A + +   A+   L  +M +H   PN+
Sbjct: 169 MYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNA 228

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD----------LFLTNALTDMYAKCGC 108
            TL  +LP  A+   L  G  +HA  IR  L+ +          + L  AL DMYAKCG 
Sbjct: 229 STLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGS 288

Query: 109 LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-DVVSFMGAIS 166
           L  A+ VF+ +  R+EV+++ LI G+   S  +++  LF  M   G+      S   A+ 
Sbjct: 289 LLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALR 348

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
           ACA+L  ++ G+++H +  +  +H  L   NS+L  Y ++G ID A  +FD + VKD+ S
Sbjct: 349 ACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 408

Query: 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM- 285
           ++ L+ GY   G  + A  +F+ M+   V  D  + ++++ ACSH   ++ G+     + 
Sbjct: 409 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 468

Query: 286 ----------------------------QADSVKPTE--MHYACMVDLLGRAGLMEDAVK 315
                                       Q  ++ P+   + +  M+   G  GL ++A  
Sbjct: 469 IRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATA 528

Query: 316 L---IKNLPVEPDANIWGALLGACRIYGNVELGA-W--AAEHLFMLKPQHCGYYILLSNM 369
           L   + NL   PD   +  LL AC   G V  G  W     H + L P+   +YI + ++
Sbjct: 529 LFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPR-MEHYICMVDL 587

Query: 370 YAEAGKWDEASKVRELMKSR 389
            +  G  DEA +  + M  R
Sbjct: 588 LSRGGFLDEAYEFIQSMPLR 607



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 200/444 (45%), Gaps = 65/444 (14%)

Query: 5   SSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKA--LQLVREMPIHNEFPNSVTLT 62
           S   + A +LF  I   ++ ++N ++  ++ +     A  L L R M  H   PN+ T  
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFR 121
             L AC+       G+ IH   I  GL  DLF++ AL DMY KC CL  A ++F  +  R
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 122 DEVSYNILIVGYSQTSDCSESLS--LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           D V++N ++ GY+       +++  L  +M++  ++ +  + +  +   A   A+ QG  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 180 IHGVTIRKHLHTH----------LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
           +H   IR  LH++          + +  ++LD Y + G +  A ++FD +P ++  +W+ 
Sbjct: 250 VHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTAC------------------- 269
           LI G+ +   +  A  LF+AM   G+ +  P S  + L AC                   
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 270 ----------------SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
                           +  GL+++    FDEM   +VK T + Y+ +V    + G  E+A
Sbjct: 370 GVHADLTAGNSLLSMYAKAGLIDQAIALFDEM---AVKDT-VSYSALVSGYVQNGRAEEA 425

Query: 314 VKLIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEHLFML----KPQHCGYYILL 366
             + K +    VEPDA    +L+ AC     ++ G  +   + +     +   C   I  
Sbjct: 426 FLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALI-- 483

Query: 367 SNMYAEAGKWDEASKVRELMKSRE 390
            +MYA+ G+ D + +V  +M SR+
Sbjct: 484 -DMYAKCGRIDLSRQVFNMMPSRD 506


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 161/415 (38%), Positives = 242/415 (58%), Gaps = 4/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY       EA  +F  +  +++VSW  +++    N L  KAL+  + M I    P+ VT
Sbjct: 280 MYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVT 339

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VL ACA    L  G ++H    R G    + + N+L DMY+KC  +  A  +F+ I 
Sbjct: 340 IASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIP 399

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+  +I G    + C E+L  F +M +L  K + V+ + A+SACA + A+  GKE
Sbjct: 400 DKDVISWTSVINGLRINNRCFEALIFFRKM-ILKSKPNSVTLISALSACARVGALMCGKE 458

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   ++  +    F+ N+ILD Y R GR+  A   F+ L  KD  +WN L+ GY   G+
Sbjct: 459 IHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLTGYAQKGK 517

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
               + LF+ M E  +  D V++I++L ACS  G+V +G +YF  M+ +  + P   HYA
Sbjct: 518 GAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYA 577

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGRAG + +A + I+ +P++PD  IWGALL ACRI+ +V LG  AA+H+F    +
Sbjct: 578 CVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAE 637

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             GYYILL N+YA++GKWDE +KVR  MK      +PGCSWV+ + +V  F+  D
Sbjct: 638 SIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGD 692



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 165/339 (48%), Gaps = 2/339 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ +      A  +F  + E+++ SWN +V  + +     +AL L   +      P+  T
Sbjct: 78  MFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYT 137

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL +CA    L  G+E+HA ++R   + D+ + NAL  MY KCG +  A+ +F+ + 
Sbjct: 138 FPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMP 197

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+N +I GY +  +C E L LF  MR L +  D+++    ISAC  L   + G +
Sbjct: 198 TRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQ 257

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +R     ++ V NS++  Y   G    A  +F  +  +D  SW T+I G      
Sbjct: 258 LHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLL 317

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D A+  ++ M   G   D V+  ++L+AC+  G ++ G K  +  +        +    
Sbjct: 318 PDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANS 377

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
           ++D+  +   +E A+++   +P + D   W +++   RI
Sbjct: 378 LIDMYSKCKRIEKALEIFHQIP-DKDVISWTSVINGLRI 415



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 167/342 (48%), Gaps = 20/342 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL---VREMPIHNEFPN 57
           MY K      A  LF  +  ++ +SWNAM++ + +N   L+ L+L   +RE+ I    P+
Sbjct: 179 MYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSID---PD 235

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
            +T+T+V+ AC      R G ++H+ ++R   + ++ + N+L  MY   G    A++VF+
Sbjct: 236 LMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFS 295

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  RD VS+  +I G        ++L  +  M + G   D V+    +SACA+L  +  
Sbjct: 296 GMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDM 355

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G ++H +  R     ++ VANS++D Y++  RI+ A +IF  +P KD  SW ++I G  +
Sbjct: 356 GMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRI 415

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE-----MQADSVK 291
                 A+  F  M       + V+ I+ L+AC+  G +  GK+         M  D   
Sbjct: 416 NNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFL 474

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           P       ++DL  R G M  A+    NL  E D   W  LL
Sbjct: 475 PNA-----ILDLYVRCGRMRTALNQF-NLN-EKDVGAWNILL 509



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 147/328 (44%), Gaps = 44/328 (13%)

Query: 95  LTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
           L NAL  M+ + G +  A NVF  +  RD  S+N+L+ GY++     E+L L+  +   G
Sbjct: 71  LGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAG 130

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
           ++ DV +F   + +CA    + +G+E+H   +R      + V N+++  Y + G +  A 
Sbjct: 131 IRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSAR 190

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS--- 270
            +FD +P +D  SWN +I GY    E    + LF  MRE  +  D ++  ++++AC    
Sbjct: 191 MLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLG 250

Query: 271 --------HGGLV------------------------EKGKKYFDEMQA-DSVKPTEMHY 297
                   H  +V                        ++ +  F  M+  D V  T +  
Sbjct: 251 DERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIIS 310

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C+ +LL    L  +  K ++     PD     ++L AC   G +++G     H    + 
Sbjct: 311 GCVDNLLPDKAL--ETYKTMEITGTMPDEVTIASVLSACASLGQLDMG--MKLHELAERT 366

Query: 358 QHCGYYIL---LSNMYAEAGKWDEASKV 382
            H  Y ++   L +MY++  + ++A ++
Sbjct: 367 GHILYVVVANSLIDMYSKCKRIEKALEI 394


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 154/413 (37%), Positives = 245/413 (59%), Gaps = 10/413 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA       A  +F +I + N+V+W +++A    N    +A+++ ++M + +  PN +T
Sbjct: 149 MYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEIT 208

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGL-------NFDLFLTNALTDMYAKCGCLNLAQ 113
           + NVL ACAR   L  G+ +H R  + GL       NF++ L  A+ DMYAKCG L  A+
Sbjct: 209 MVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKCGSLKTAR 268

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
           ++FN +  R+ V++N +I  Y+Q    +E+L LFS+MR+ G   D  +F+  I ACA+L 
Sbjct: 269 DLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLG 328

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           A+  G+ +H    + +L     +  +++D Y +SG  + A ++F  L  KD  +W +LI+
Sbjct: 329 ALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLII 388

Query: 233 GYGMLGEVDTAINLFEAMRED-GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSV 290
           G  M G  + A+  F+ M+ED  +  D ++YI +L+ACSH G VE GK +F  M+    +
Sbjct: 389 GLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGI 448

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
           +PT  HY CMVDLL RAG + +A +L++ +PVEP+  IW ALL  C+IY N+++      
Sbjct: 449 EPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVADRVRR 508

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTR 403
            +  L+    G Y+LLSN+YA A +W+E    RELMK R+ +K+ G S V+ +
Sbjct: 509 RVRELEVDGSGVYVLLSNIYAGACRWEEVKMARELMKERKIQKSLGHSSVEMK 561



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 174/351 (49%), Gaps = 11/351 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+ S     A  +F+ I   ++  WN+M+  ++ +    +AL + REM      P+  T 
Sbjct: 49  YSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTF 108

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
             VL AC+  +    G+ +H  I++ G   D++   AL  MYA CG +  A  VF +I  
Sbjct: 109 PFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPK 168

Query: 121 RDEVSYNILIVGYSQTSDC-SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            + V++  LI G   ++DC SE++ ++ +M L  +  + ++ +  + ACA    +  G+ 
Sbjct: 169 WNVVAWTSLIAG-CISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRW 227

Query: 180 IHGVT-------IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           +H  T        + + + ++ +A +I+D Y + G +  A  +F+ +P ++  +WN++I 
Sbjct: 228 VHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIG 287

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
            Y   G+ + A++LF  MR  G   D  +++ ++ AC+H G +  G+     +   ++  
Sbjct: 288 AYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTD 347

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
                  +VD+  ++G  E A ++   L  + D   W +L+    ++G+ E
Sbjct: 348 DTAIGTALVDMYAKSGDAERAQQVFSELQ-KKDVTAWTSLIIGLAMHGHGE 397



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 125/274 (45%), Gaps = 11/274 (4%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDM--YAKCGCLNLAQNVFNISFRDEVS-YNILIVGYS 134
           K +H  +I   +  D+   + L D   Y+  G LN A++VFN   R  +  +N +I GYS
Sbjct: 22  KRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYS 81

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
            +    E+L+++ EMR  G   D  +F   + AC+ +     G+ +H   ++      ++
Sbjct: 82  ISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVY 141

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
            A ++L  Y   G ++ A K+FD +P  +  +W +LI G         A+ +++ M    
Sbjct: 142 AATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWS 201

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY-------ACMVDLLGRA 307
           V  + ++ + +L AC+    +  G+   D      + P + +          +VD+  + 
Sbjct: 202 VAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKC 261

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           G ++ A  L   +P   +   W +++GA   YG 
Sbjct: 262 GSLKTARDLFNKMP-HRNLVAWNSMIGAYNQYGQ 294


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 157/436 (36%), Positives = 242/436 (55%), Gaps = 37/436 (8%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL 74
           F  I  +  V WNAM++ + Q+ +  +A +L R M      P+  T T++L ACA   F 
Sbjct: 253 FEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFF 312

Query: 75  RPGKEIHARIIRKGLNF----DLFLTNALTDMYAKCGCLNLAQNVFN------------- 117
             GK +H + IR   +F     L + NAL  +Y+K G + +A  +F+             
Sbjct: 313 LHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTI 372

Query: 118 -------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
                              + ++ E+S+ +++ GY       ++L LF++MR   +K   
Sbjct: 373 LSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCD 432

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
            ++ GA++AC  L A+K GK++H   ++          N++L  Y R G +  A  +F  
Sbjct: 433 YTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLV 492

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P  DS SWN +I   G  G    A+ LF+ M   G+  D +S++ ILTAC+H GLV+ G
Sbjct: 493 MPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDG 552

Query: 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
            +YF+ M+ D  + P E HYA ++DLLGRAG + +A  LIK +P EP   IW A+L  CR
Sbjct: 553 FQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCR 612

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           I G++ELGA+AA+ LF + P+H G YILLSN Y+ AG+W +A++VR+LM+ R  KK PGC
Sbjct: 613 INGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGC 672

Query: 398 SWVQTRDEVQDFVVND 413
           SW++  ++V  F+V D
Sbjct: 673 SWIEVGNKVHVFLVGD 688



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 173/364 (47%), Gaps = 49/364 (13%)

Query: 2   YAKSSRPAEASYLFHNI--AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF--PN 57
           YA + R  +++  F ++  A ++ V  NAM++ FA+  L   A+ + R +   ++   P+
Sbjct: 99  YAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPD 158

Query: 58  SVTLTNVLPACARGHFLRPG--KEIHARIIRKGLNFDLFLTNALTDMYAKC--------- 106
             + T++L A  + H L      ++H  + + G    L ++NAL  +Y KC         
Sbjct: 159 DYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDA 218

Query: 107 -------------------------GCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCS 140
                                    G ++ A++ F  I    +V +N +I GY Q+  C+
Sbjct: 219 RKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCA 278

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL----HTHLFVA 196
           E+  LF  M    +  D  +F   +SACAN      GK +HG  IR          L V 
Sbjct: 279 EAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVN 338

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N+++  Y++SG+I +A KIFD + +KD  SWNT++ GY   G +D A  +F+ M      
Sbjct: 339 NALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYK--- 395

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
              +S++ +++   HGGL E   K F++M+++ VKP +  YA  V   G  G ++   +L
Sbjct: 396 -SELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQL 454

Query: 317 IKNL 320
             +L
Sbjct: 455 HAHL 458



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 134/300 (44%), Gaps = 51/300 (17%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF----- 55
           +Y+KS + A A+ +F ++  K++VSWN +++ + ++     A ++ +EMP  +E      
Sbjct: 344 LYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVM 403

Query: 56  --------------------------PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
                                     P   T    + AC     L+ GK++HA +++ G 
Sbjct: 404 VSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGF 463

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVGYSQTSDCSESLSLFSE 148
                  NAL  MYA+CG +  A+ VF +    D VS+N +I    Q     E+L LF +
Sbjct: 464 EASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQ 523

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQG-------KEIHGVTIRKHLHTHLFVANSILD 201
           M   G+  D +SF+  ++AC +   +  G       +   G++  +  +  L      +D
Sbjct: 524 MVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARL------ID 577

Query: 202 FYTRSGRIDLANKIFDCLPVKDS-ASWNTLILGYGMLGEVD----TAINLFEAMRE-DGV 255
              R+GRI  A  +   +P + + A W  ++ G  + G+++     A  LF+ + E DG 
Sbjct: 578 LLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGT 637



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 141/343 (41%), Gaps = 53/343 (15%)

Query: 97  NALTDMYAKCGCLNLAQNVFN---ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL- 152
            +L   YA  G L  +   F+   ++ RD V +N +I  +++ S  + ++S+F  +    
Sbjct: 93  TSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASD 152

Query: 153 -GMKHDVVSFMGAISACANL--AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR---S 206
             ++ D  SF   +SA   +   A+    ++H    +      L V+N+++  Y +    
Sbjct: 153 DSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAP 212

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT------------------------ 242
           G    A K+ D +P KD  +W T+++G+   G+V                          
Sbjct: 213 GVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYV 272

Query: 243 -------AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY---FDEMQADSVKP 292
                  A  LF  M    +  D  ++ ++L+AC++ G    GK     F  +Q D V  
Sbjct: 273 QSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPE 332

Query: 293 TEMHY-ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWA-AE 350
             +     +V L  ++G +  A K+  ++ ++ D   W  +L      G +E G    A 
Sbjct: 333 AALPVNNALVTLYSKSGKIAVATKIFDSMTLK-DVVSWNTILS-----GYIESGCLDNAA 386

Query: 351 HLFMLKPQHCGY-YILLSNMYAEAGKWDEASKVRELMKSREAK 392
            +F   P      ++++ + Y   G  ++A K+   M+S + K
Sbjct: 387 RIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVK 429


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 160/450 (35%), Positives = 249/450 (55%), Gaps = 39/450 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVT 60
           Y +      A  +F  +  K  V WNAM++ + Q+ +   A +L R M +  + P +  T
Sbjct: 242 YVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRM-VSEKVPLDEFT 300

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF----DLFLTNALTDMYAK----------- 105
            T+VL ACA   F   GK +H +IIR   NF     L + NAL  +Y+K           
Sbjct: 301 FTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIF 360

Query: 106 --------------------CGCLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSESLS 144
                                GCL+ A  VF +  +++++S+ +++ GY       ++L 
Sbjct: 361 DTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALK 420

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
           LF++MR   +K    ++ GAI+AC  L A+K G+++H   ++          N++L  Y 
Sbjct: 421 LFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYA 480

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           + G ++ A  +F  +P  DS SWN +I   G  G    A+ LF+ M  +G+  D +S++ 
Sbjct: 481 KCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLT 540

Query: 265 ILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
           ILTAC+H GLV++G  YF+ M+ D  + P E HYA ++DLLGR+G + +A  LIK +P E
Sbjct: 541 ILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFE 600

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVR 383
           P  +IW A+L  CR  G++E GA+AA+ LF + PQH G YILLSN Y+ AG+W +A++VR
Sbjct: 601 PTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVR 660

Query: 384 ELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +LM+ R  KK PGCSW++   ++  F+V D
Sbjct: 661 KLMRDRGVKKEPGCSWIEVGSKIHVFLVGD 690



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 172/362 (47%), Gaps = 48/362 (13%)

Query: 3   AKSSRPAEASYLFHNI--AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           A + R  +A+  F  +  A ++ V  NAM++ FA+  L   A+ +   +       P+  
Sbjct: 103 AAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDY 162

Query: 60  TLTNVLPACARGHFLRPG--KEIHARIIRKGLNFDLFLTNALTDMYAKC----------- 106
           + T ++ A  + H L      ++H  +++ G    L ++NAL  +Y KC           
Sbjct: 163 SFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARK 222

Query: 107 -----------------------GCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSES 142
                                  G +N A++VF  +  + +V +N +I GY Q+  C+++
Sbjct: 223 VLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADA 282

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH----THLFVANS 198
             LF  M    +  D  +F   +SACAN      GK +HG  IR   +      L V N+
Sbjct: 283 FELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNA 342

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
           ++  Y++ G+I +A +IFD + +KD  SWNT++ GY   G +D A+ +F+ M       +
Sbjct: 343 LVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK----N 398

Query: 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
            +S++ +++   HGGL E   K F++M+A+ VKP +  YA  +   G  G ++   +L  
Sbjct: 399 DLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHA 458

Query: 319 NL 320
           +L
Sbjct: 459 HL 460



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 123/281 (43%), Gaps = 46/281 (16%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF----- 55
           +Y+K  +   A  +F  +  K++VSWN +++ +  +    KA+++ + MP  N+      
Sbjct: 346 LYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVM 405

Query: 56  --------------------------PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
                                     P   T    + AC     L+ G+++HA +++ G 
Sbjct: 406 VSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGF 465

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVGYSQTSDCSESLSLFSE 148
                  NAL  MYAKCG +N A+ VF +    D VS+N +I    Q     E+L LF +
Sbjct: 466 EASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQ 525

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQG-------KEIHGVTIRKHLHTHLFVANSILD 201
           M   G+  D +SF+  ++AC +   + +G       K   G++  +  +  L      +D
Sbjct: 526 MVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARL------ID 579

Query: 202 FYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGMLGEVD 241
              RSGRI  A  +   +P + + S W  ++ G    G+++
Sbjct: 580 LLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDME 620


>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
 gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 153/403 (37%), Positives = 241/403 (59%), Gaps = 3/403 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK    A A  LF+ +  K++V+WNAM+  +AQ      AL++  ++ +    PNS T
Sbjct: 133 MYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGT 192

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS- 119
           +  +LPA A  + L  G  IH +II+ G   +  +  AL DMYAKCG L+ A+ +F+ + 
Sbjct: 193 MVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTG 252

Query: 120 -FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +DEVS+N++I GY  +    ++ S F +M+L  ++ ++V+ +  + A A+L+A++ G 
Sbjct: 253 CRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGM 312

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H   IR    +   V N ++D Y + G +D + KIF  +  KD+ SWN ++ GY + G
Sbjct: 313 TLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHG 372

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               AI LF  M++  +  D  S+I +L+AC H GL+ +G+K FD M +   ++P   HY
Sbjct: 373 RGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKIFDSMSKQHQLEPDLEHY 432

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACM DLLGRAGL  + + LIK++P+EPDA +WGALLGA  ++ NV+L  +A  HL  L+ 
Sbjct: 433 ACMADLLGRAGLFNEVLDLIKSMPMEPDAGVWGALLGASTMHSNVQLAEFALHHLDKLEH 492

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
           ++  +Y  LSN YA +G+W +    R  +     +K+PG SWV
Sbjct: 493 KNLTHYAALSNTYARSGRWADVGNTRSKITKTGLRKSPGYSWV 535



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 167/345 (48%), Gaps = 9/345 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+      A  LF  I  +++V+W+A++A F Q+    +AL L R M       N V 
Sbjct: 32  MYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQSGYPQEALSLFRSMQNEGLQANKVI 91

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L + LPACA    L+ GK +H   ++  ++ D+ +  AL  MYAKCG   LA  +FN + 
Sbjct: 92  LLSSLPACAEVSSLKLGKSMHCCAVKANVDLDISVGTALVSMYAKCGFFALALTLFNRMP 151

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V++N +I GY+Q  +   +L +F +++L  +  +  + +G + A A L  + QG  
Sbjct: 152 CKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPAFALLNDLDQGSC 211

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KDSASWNTLILGYGMLG 238
           IHG  I+    +   V  +++D Y + G +  A  +F      KD  SWN +I GY   G
Sbjct: 212 IHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSG 271

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG---KKYFDEMQADSVKPTEM 295
               A + F  M+ + +  + V+ + +L A +H   +  G     Y   M   S  P   
Sbjct: 272 HAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTLHAYVIRMGFQSKTPVG- 330

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
              C++D+  + G ++ + K+   +    D   W  +L    ++G
Sbjct: 331 --NCLIDMYAKCGWLDHSEKIFHEMK-NKDTVSWNVMLAGYAVHG 372



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 134/275 (48%), Gaps = 25/275 (9%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           L  G EIH    ++G++ D+ +   +  MYA+CG ++ A+ +F  I  RD V+++ +I  
Sbjct: 4   LGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAA 63

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           + Q+    E+LSLF  M+  G++ + V  + ++ ACA ++++K GK +H   ++ ++   
Sbjct: 64  FVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLD 123

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           + V  +++  Y + G   LA  +F+ +P KD  +WN +I GY  +GE   A+ +F  ++ 
Sbjct: 124 ISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQL 183

Query: 253 DGVGYDPVSYIAILTA-----------CSHGGLVEKGKKYFDEMQADSVKPTEMHY-ACM 300
             +  +  + + +L A           C HG +++ G +            +E H    +
Sbjct: 184 SELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFE------------SECHVKTAL 231

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +D+  + G +  A  L        D   W  ++  
Sbjct: 232 IDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAG 266



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 1/163 (0%)

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           + A+ +G EIH    ++ + + + VA  I+  Y R G +D A ++F  +  +D  +W+ +
Sbjct: 1   MRALGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAI 60

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           I  +   G    A++LF +M+ +G+  + V  ++ L AC+    ++ GK         +V
Sbjct: 61  IAAFVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANV 120

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                    +V +  + G    A+ L   +P + D   W A++
Sbjct: 121 DLDISVGTALVSMYAKCGFFALALTLFNRMPCK-DVVTWNAMI 162


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  297 bits (761), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 155/417 (37%), Positives = 241/417 (57%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+     +A  LF+ + +++++SWNA++A +A+     +A++L ++M      P  VT
Sbjct: 374 MYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT 433

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L ACA       GK IH  I+R G+  +  L NAL +MY +CG L  AQNVF    
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+N +I G++Q      +  LF EM+   ++ D ++F   +S C N  A++ GK+
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG      L   + + N++++ Y R G +  A  +F  L  +D  SW  +I G    GE
Sbjct: 554 IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613

Query: 240 VDTAINLFEAMREDGV-GYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
              AI LF  M+ +G    D  ++ +IL+AC+H GLV +G + F  M+++  V PT  HY
Sbjct: 614 DMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHY 673

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C+V LLGRA   ++A  LI  +P  PDA +W  LLGACRI+GN+ L   AA +   L  
Sbjct: 674 GCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNA 733

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           ++   YILLSN+YA AG+WD+ +K+R +M+ R  +K PG SW++  + + +F+  DR
Sbjct: 734 RNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADR 790



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 168/336 (50%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  +  ++++SWN++++ +AQ   + KA QL  EM      PN +T
Sbjct: 71  MYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKIT 130

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             ++L AC     L  GK+IH++II+ G   D  + N+L  MY KCG L  A+ VF  IS
Sbjct: 131 YISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGIS 190

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VSYN ++  Y+Q +   E L LF +M   G+  D V+++  + A    + + +GK 
Sbjct: 191 PRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKR 250

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH +T+ + L++ + V  +++    R G +D A + F  +  +D   +N LI      G 
Sbjct: 251 IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGH 310

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A   +  MR DGV  +  +Y++IL ACS    +E GK     +  D           
Sbjct: 311 NVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNA 370

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++ +  R G +  A +L   +P + D   W A++  
Sbjct: 371 LISMYARCGDLPKARELFYTMP-KRDLISWNAIIAG 405



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 166/344 (48%), Gaps = 2/344 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  I+ +++VS+N M+  +AQ     + L L  +M      P+ VT
Sbjct: 172 MYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVT 231

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             N+L A      L  GK IH   + +GLN D+ +  AL  M  +CG ++ A+  F  I+
Sbjct: 232 YINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIA 291

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V YN LI   +Q     E+   +  MR  G+  +  +++  ++AC+   A++ GK 
Sbjct: 292 DRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKL 351

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH         + + + N+++  Y R G +  A ++F  +P +D  SWN +I GY    +
Sbjct: 352 IHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRED 411

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ L++ M+ +GV    V+++ +L+AC++      GK   +++    +K        
Sbjct: 412 RGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANA 471

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           ++++  R G + +A  + +      D   W +++     +G+ E
Sbjct: 472 LMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYE 514



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 145/289 (50%), Gaps = 3/289 (1%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           +  T   +L  C R   L   K IHA+++  G+  D+FL+N L +MY KC  +  A  VF
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
             +  RD +S+N LI  Y+Q     ++  LF EM+  G   + ++++  ++AC + A ++
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK+IH   I+        V NS+L  Y + G +  A ++F  +  +D  S+NT++  Y 
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
               V   + LF  M  +G+  D V+YI +L A +   ++++GK+       + +     
Sbjct: 206 QKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIR 265

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG-NVE 343
               +V +  R G ++ A +  K +  + D  ++ AL+ A   +G NVE
Sbjct: 266 VGTALVTMCVRCGDVDSAKQAFKGI-ADRDVVVYNALIAALAQHGHNVE 313



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 102/231 (44%), Gaps = 4/231 (1%)

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
           D  +++  +  C     + + K IH   +   +   +F++N +++ Y +   +  A+++F
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
             +P +D  SWN+LI  Y   G    A  LFE M+  G   + ++YI+ILTAC     +E
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG-- 334
            GKK   ++     +        ++ + G+ G +  A ++   +    D   +  +LG  
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPR-DVVSYNTMLGLY 204

Query: 335 ACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385
           A + Y    LG +       + P    Y  LL + +      DE  ++ +L
Sbjct: 205 AQKAYVKECLGLFGQMSSEGISPDKVTYINLL-DAFTTPSMLDEGKRIHKL 254


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  297 bits (761), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 155/414 (37%), Positives = 247/414 (59%), Gaps = 10/414 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+    ++A  LF+    +++ +W AMV+ + QN +  +A +   EMP+ NE   +  L
Sbjct: 242 YAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAML 301

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
              +        +  G+   A   R   +++  +T      Y + G +  A+ +F++   
Sbjct: 302 AGYVQY---KKMVIAGELFEAMPCRNISSWNTMITG-----YGQNGGIAQARKLFDMMPQ 353

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VS+  +I GY+Q     E+L++F EM+  G   +  +F  A+S CA++AA++ GK++
Sbjct: 354 RDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQV 413

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  ++    T  FV N++L  Y + G  D AN +F+ +  KD  SWNT+I GY   G  
Sbjct: 414 HGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFG 473

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             A+ LFE+M++ GV  D ++ + +L+ACSH GL+++G +YF  M  D +VKPT  HY C
Sbjct: 474 RQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTC 533

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           M+DLLGRAG +E+A  L++N+P +P A  WGALLGA RI+GN ELG  AAE +F ++PQ+
Sbjct: 534 MIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQN 593

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G Y+LLSN+YA +G+W +  K+R  M+    +K  G SWV+ ++++  F V D
Sbjct: 594 SGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGD 647



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 150/299 (50%), Gaps = 21/299 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++ R  EA  LF  + +K++VSWNAM++ +AQN    +A ++  +MP      NS++ 
Sbjct: 118 YVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMP----HRNSISW 173

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             +L A      L+  +    R+     N++L   N L   Y K   L  A+ +F+ +  
Sbjct: 174 NGLLAAYVHNGRLKEAR----RLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPV 229

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD +S+N +I GY+Q  D S++  LF+E  +     DV ++   +S       + + ++ 
Sbjct: 230 RDVISWNTMISGYAQVGDLSQAKRLFNESPI----RDVFTWTAMVSGYVQNGMVDEARKY 285

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
                 K+  ++    N++L  Y +  ++ +A ++F+ +P ++ +SWNT+I GYG  G +
Sbjct: 286 FDEMPVKNEISY----NAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGI 341

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
             A  LF+ M +     D VS+ AI++  +  G  E+    F EM+ D        ++C
Sbjct: 342 AQARKLFDMMPQR----DCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSC 396



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 180/383 (46%), Gaps = 35/383 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEKN--IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           Y +S R +  SY   ++  K+  IV+WN  +++  +N     AL++   MP      +SV
Sbjct: 23  YYRSKRRSTNSYSPSSVKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRR----SSV 78

Query: 60  TLTNVLPACARGHFLRPGKEIHAR-IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
           +   ++       +LR  K   AR +  K    DLF  N +   Y +   L  A  +F++
Sbjct: 79  SYNAMISG-----YLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDL 133

Query: 119 -SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              +D VS+N ++ GY+Q     E+  +F++M       + +S+ G ++A  +   +K+ 
Sbjct: 134 MPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMP----HRNSISWNGLLAAYVHNGRLKEA 189

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + +         +  L   N ++  Y +   +  A ++FD +PV+D  SWNT+I GY  +
Sbjct: 190 RRL----FESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQV 245

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G++  A  LF     +    D  ++ A+++     G+V++ +KYFDEM   +    E+ Y
Sbjct: 246 GDLSQAKRLF----NESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKN----EISY 297

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
             M+    +   M  A +L + +P   + + W  ++     YG    G   A  LF + P
Sbjct: 298 NAMLAGYVQYKKMVIAGELFEAMPCR-NISSWNTMITG---YGQ-NGGIAQARKLFDMMP 352

Query: 358 QH-CGYYILLSNMYAEAGKWDEA 379
           Q  C  +  + + YA+ G ++EA
Sbjct: 353 QRDCVSWAAIISGYAQNGHYEEA 375



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 119/268 (44%), Gaps = 24/268 (8%)

Query: 117 NISFRDE--VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           ++ F+D   V++N  I  + +   C  +L +F+ M     +   VS+   IS     A  
Sbjct: 38  SVKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMP----RRSSVSYNAMISGYLRNAKF 93

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
              +++      K     LF  N +L  Y R+ R+  A+K+FD +P KD  SWN ++ GY
Sbjct: 94  SLARDL----FDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGY 149

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G VD A  +F  M       + +S+  +L A  H G +++ ++ F+      +    
Sbjct: 150 AQNGFVDEAREVFNKMPHR----NSISWNGLLAAYVHNGRLKEARRLFESQSNWEL---- 201

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
           + + C++    +  ++ DA +L   +PV  D   W  ++      G++      A+ LF 
Sbjct: 202 ISWNCLMGGYVKRNMLGDARQLFDRMPVR-DVISWNTMISGYAQVGDLS----QAKRLFN 256

Query: 355 LKP-QHCGYYILLSNMYAEAGKWDEASK 381
             P +    +  + + Y + G  DEA K
Sbjct: 257 ESPIRDVFTWTAMVSGYVQNGMVDEARK 284



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 8/125 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA+ +F  I EK++VSWN M+A +A++    +AL L   M      P+ +T
Sbjct: 435 MYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEIT 494

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTN----ALTDMYAKCGCLNLAQNVF 116
           +  VL AC+    +  G E    + R   ++++  T+     + D+  + G L  A+N+ 
Sbjct: 495 MVGVLSACSHSGLIDRGTEYFYSMDR---DYNVKPTSKHYTCMIDLLGRAGRLEEAENLM 551

Query: 117 -NISF 120
            N+ F
Sbjct: 552 RNMPF 556


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  297 bits (761), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 154/415 (37%), Positives = 244/415 (58%), Gaps = 3/415 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K    + A  +F      ++V + AM++ +  N L + AL++ R +      PN +TL
Sbjct: 381 YFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITL 440

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++LP       L+ G+E+H  II+KG +    +  A+ DMYAKCG +NLA  +F  +S 
Sbjct: 441 VSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSK 500

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VS+N +I   +Q+ + S ++ +F +M + G+  D VS   A+SACANL +   GK I
Sbjct: 501 RDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAI 560

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  I+  L   ++  ++++D Y + G +  A  +FD +  K+  SWN++I  YG  G++
Sbjct: 561 HGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKL 620

Query: 241 DTAINLFEAMRE-DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
             ++ LF  M E  G   D ++++ I++ C H G V++G ++F  M  D  ++P + HYA
Sbjct: 621 KDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYA 680

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDL GRAG + +A + +K++P  PDA +WG LLGA R++ NVEL   A+  L  L P 
Sbjct: 681 CVVDLFGRAGRLSEAYETVKSMPFPPDAGVWGTLLGASRLHKNVELAKVASSRLMDLDPW 740

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + GYY+L+SN +A  G+W+  +KVR LMK RE +K PG SW++       FV  D
Sbjct: 741 NSGYYVLISNAHANTGEWESVTKVRSLMKEREVQKIPGYSWIEINKITHLFVSGD 795



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 177/342 (51%), Gaps = 5/342 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  R  +A  LF  ++  + V+WN M++ + Q+ L  ++L    EM      P+++T
Sbjct: 279 MYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAIT 338

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +++LP+ ++   L   ++IH  I+R  ++ D+FLT+AL D Y KC  +++AQ +F+  +
Sbjct: 339 FSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCN 398

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V +  +I GY       ++L +F  +  + +  + ++ +  +     L A+K G+E
Sbjct: 399 SVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRE 458

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  I+K       +  +++D Y + GR++LA +IF  L  +D  SWN++I        
Sbjct: 459 LHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDN 518

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              AI++F  M   G+ +D VS  A L+AC++      GK     M   S+       + 
Sbjct: 519 PSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSEST 578

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           ++D+  + G ++ A+ +   +  E +   W +++ A   YGN
Sbjct: 579 LIDMYAKCGNLKAAMNVFDTMK-EKNIVSWNSIIAA---YGN 616



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 155/352 (44%), Gaps = 21/352 (5%)

Query: 47  REMPIHNEF-------PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99
           + +P+ N +       P  ++L  +L  C+    LR GK++HA +I   ++ D +    +
Sbjct: 15  KSLPLRNSYRFLEETLPRRLSL--LLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERI 72

Query: 100 TDMYAKCGCL-NLAQNVFNISFRDEV--SYNILIVGYSQTSDCSESLSLFSEMRLLGMKH 156
             MYA CG   N  +  + +  R      +N +I  + +    +++L+ + +M   G+  
Sbjct: 73  LGMYAMCGSFSNCGKMFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSP 132

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
           DV +F   + AC  L   K  + +        +  + FVA+S++  Y   G+ID+A K+F
Sbjct: 133 DVSTFPCLVKACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLF 192

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
           D +  KD   WN ++ GY   G  D+ I  F  MR D +  + V++  +L+ C+   L++
Sbjct: 193 DRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLID 252

Query: 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
            G +    +    +         ++ +  + G  +DA+KL + +    D   W      C
Sbjct: 253 LGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMS-RADTVTWN-----C 306

Query: 337 RIYGNVELGAWAAEHLFMLKPQHCGYY---ILLSNMYAEAGKWDEASKVREL 385
            I G V+ G      +F  +    G     I  S++     K++     R++
Sbjct: 307 MISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQI 358



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 137/273 (50%), Gaps = 3/273 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEK--NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MYA     +    +F+ +  +  +I  WN+++++F +  L  +AL    +M      P+ 
Sbjct: 75  MYAMCGSFSNCGKMFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDV 134

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T   ++ AC      +  + +   +   G++ + F+ ++L   Y + G +++A  +F+ 
Sbjct: 135 STFPCLVKACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDR 194

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  +D V +N+++ GY++       +  FS MR+  +  + V+F   +S CA+   I  G
Sbjct: 195 VLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLG 254

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            ++HG+ +   L     + NS+L  Y++ GR D A K+F  +   D+ +WN +I GY   
Sbjct: 255 VQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQS 314

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
           G ++ ++  F  M   GV  D +++ ++L + S
Sbjct: 315 GLMEESLIFFYEMISSGVLPDAITFSSLLPSVS 347



 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           MYAK      A  +F  + EKNIVSWN+++A +  +     +L L  EM       P+ +
Sbjct: 582 MYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQI 641

Query: 60  TLTNVLPAC 68
           T   ++  C
Sbjct: 642 TFLEIISLC 650


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  297 bits (761), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 151/416 (36%), Positives = 243/416 (58%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     EA  +F  + +K+ VSWNA++A   QN      +    EM      P+  T
Sbjct: 395 LYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFT 454

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL ACA    L  G  +H ++I+ GL  D F+ + + DMY KCG ++ AQ + + I 
Sbjct: 455 YGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIG 514

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N ++ G+S   +  E+   FSEM  +G+K D  +F   +  CANLA I+ GK+
Sbjct: 515 GQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ 574

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  I++ +    +++++++D Y + G +  +  +F+ +  +D  SWN +I GY + G 
Sbjct: 575 IHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGL 634

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ +FE M+++ V  +  +++A+L ACSH GL + G +YF  M     ++P   H+A
Sbjct: 635 GVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFA 694

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGR+   ++AVK I ++P + DA IW  LL  C+I  +VE+   AA ++ +L P 
Sbjct: 695 CMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPD 754

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               YILLSN+YAE+GKW + S+ R L+K    KK PGCSW++ + E+  F+V D+
Sbjct: 755 DSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDK 810



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 169/371 (45%), Gaps = 4/371 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A   F+ + E+N VSW A +A   QN   ++ L+L  EM       +  +
Sbjct: 193 MYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPS 252

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +   +CA    L  G+++HA  I+   + D  +  A+ D+YAK   L  A+  F  + 
Sbjct: 253 YASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 312

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
                + N ++VG  +     E++ LF  M    ++ DVVS  G  SACA      QG++
Sbjct: 313 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQ 372

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + I+      + V N++LD Y +   +  A  IF  +  KDS SWN +I      G 
Sbjct: 373 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGH 432

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D  I  F  M   G+  D  +Y ++L AC+    +E G    D++    +       + 
Sbjct: 433 YDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVAST 492

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGA-WAAEHLFM-LKP 357
           +VD+  + G++++A KL   +  +   + W A+L    +    E    + +E L M LKP
Sbjct: 493 VVDMYCKCGIIDEAQKLHDRIGGQQVVS-WNAILSGFSLNKESEEAQKFFSEMLDMGLKP 551

Query: 358 QHCGYYILLSN 368
            H  +  +L  
Sbjct: 552 DHFTFATVLDT 562



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 164/349 (46%), Gaps = 14/349 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+ +   + A  LF  + + ++VSWNA+V+ + Q  +  +++ L  EM      P+  T 
Sbjct: 93  YSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTF 152

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
             +L +C+    L  G ++HA  ++ GL  D+   +AL DMY KC  L+ A   F  +  
Sbjct: 153 AVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPE 212

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+   I G  Q       L LF EM+ LG+     S+  A  +CA ++ +  G+++
Sbjct: 213 RNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQL 272

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   I+    +   V  +I+D Y ++  +  A + F  LP     + N +++G    G  
Sbjct: 273 HAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLG 332

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPTEMHYA 298
             A+ LF+ M    + +D VS   + +AC+      + K YF   Q    ++K       
Sbjct: 333 IEAMGLFQFMIRSSIRFDVVSLSGVFSACA------ETKGYFQGQQVHCLAIKSGFDVDI 386

Query: 299 C----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           C    ++DL G+   + +A  + + +  + D+  W A++ A    G+ +
Sbjct: 387 CVNNAVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAALEQNGHYD 434



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 1/226 (0%)

Query: 97  NALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155
           N +   Y+  G ++ A  +F+ +   D VS+N L+ GY Q     ES+ LF EM   G+ 
Sbjct: 87  NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
            D  +F   + +C+ L  +  G ++H + ++  L   +   ++++D Y +   +D A   
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 206

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275
           F  +P ++  SW   I G     +    + LF  M+  G+G    SY +   +C+    +
Sbjct: 207 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 266

Query: 276 EKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
             G++       +      +    +VD+  +A  + DA +    LP
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 312



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 40/178 (22%)

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
           FV+N +L  Y R      A ++FD +P +D+ SWNT++  Y   G++ TA+ LF+ M + 
Sbjct: 53  FVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDP 112

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA--------------- 298
               D VS+ A+++     G+ ++    F EM    V P    +A               
Sbjct: 113 ----DVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLG 168

Query: 299 --------------------CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
                                +VD+ G+   ++DA+     +P E +   WGA +  C
Sbjct: 169 VQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMP-ERNWVSWGAAIAGC 225


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  297 bits (761), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 153/423 (36%), Positives = 249/423 (58%), Gaps = 3/423 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSV 59
           MYAK      A  +F  +  +N V+W+A++  F       +A  L + M      F +  
Sbjct: 282 MYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT 341

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           ++ + L ACA    LR G+++HA + + G++ DL   N+L  MYAK G ++ A  +F+ +
Sbjct: 342 SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEM 401

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + +D VSY+ L+ GY Q     E+  +F +M+   ++ D  + +  I AC++LAA++ G+
Sbjct: 402 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 461

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             HG  I + L +   + N+++D Y + GRIDL+ ++F+ +P +D  SWNT+I GYG+ G
Sbjct: 462 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHG 521

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               A  LF  M   G   D V++I +L+ACSH GLV +GK +F  M     + P   HY
Sbjct: 522 LGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHY 581

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLL R G +++A + I+++P+  D  +W ALLGACR+Y N++LG   +  +  L P
Sbjct: 582 ICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGP 641

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKT 417
           +  G ++LLSN+Y+ AG++DEA++VR + K +  KK+PGCSW++    +  FV  D+   
Sbjct: 642 EGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHP 701

Query: 418 FTP 420
            +P
Sbjct: 702 QSP 704



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 211/440 (47%), Gaps = 52/440 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQ--LVREMPIHNEFPNS 58
           MY K +   +A+++F  +  +++V+WNAM+A +A + +   A+   L  +M +H   PN+
Sbjct: 169 MYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNA 228

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD----------LFLTNALTDMYAKCGC 108
            TL  +LP  A+   L  G  +HA  IR  L+ +          + L  AL DMYAKCG 
Sbjct: 229 STLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGS 288

Query: 109 LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-DVVSFMGAIS 166
           L  A+ VF+ +  R+EV+++ LI G+   S  +++  LF  M   G+      S   A+ 
Sbjct: 289 LLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALR 348

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
           ACA+L  ++ G+++H +  +  +H  L   NS+L  Y ++G ID A  +FD + VKD+ S
Sbjct: 349 ACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 408

Query: 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM- 285
           ++ L+ GY   G  + A  +F+ M+   V  D  + ++++ ACSH   ++ G+     + 
Sbjct: 409 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 468

Query: 286 ----------------------------QADSVKPTE--MHYACMVDLLGRAGLMEDAVK 315
                                       Q  ++ P+   + +  M+   G  GL ++A  
Sbjct: 469 IRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATA 528

Query: 316 L---IKNLPVEPDANIWGALLGACRIYGNVELGA-W--AAEHLFMLKPQHCGYYILLSNM 369
           L   + NL   PD   +  LL AC   G V  G  W     H + L P+   +YI + ++
Sbjct: 529 LFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPR-MEHYICMVDL 587

Query: 370 YAEAGKWDEASKVRELMKSR 389
            +  G  DEA +  + M  R
Sbjct: 588 LSRGGFLDEAYEFIQSMPLR 607



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 199/444 (44%), Gaps = 65/444 (14%)

Query: 5   SSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKA--LQLVREMPIHNEFPNSVTLT 62
           S   + A +LF  I   ++ ++N ++  ++ +     A  L L R M  H   PN+ T  
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFR 121
             L AC+       G+ IH   I  GL  DLF++ AL DMY KC CL  A ++F  +  R
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 122 DEVSYNILIVGYSQTSDCSESLS--LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           D V++N ++ GY+       +++  L  +M++  ++ +  + +  +   A   A+ QG  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 180 IHGVTIRKHLHTH----------LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
           +H   IR  LH +          + +  ++LD Y + G +  A ++FD +P ++  +W+ 
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTAC------------------- 269
           LI G+ +   +  A  LF+AM   G+ +  P S  + L AC                   
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 270 ----------------SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
                           +  GL+++    FDEM   +VK T + Y+ +V    + G  E+A
Sbjct: 370 GVHADLTAGNSLLSMYAKAGLIDQAIALFDEM---AVKDT-VSYSALVSGYVQNGRAEEA 425

Query: 314 VKLIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEHLFML----KPQHCGYYILL 366
             + K +    VEPDA    +L+ AC     ++ G  +   + +     +   C   I  
Sbjct: 426 FLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALI-- 483

Query: 367 SNMYAEAGKWDEASKVRELMKSRE 390
            +MYA+ G+ D + +V  +M SR+
Sbjct: 484 -DMYAKCGRIDLSRQVFNMMPSRD 506


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 151/416 (36%), Positives = 243/416 (58%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     EA  +F  + +K+ VSWNA++A   QN      +    EM      P+  T
Sbjct: 395 LYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFT 454

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL ACA    L  G  +H ++I+ GL  D F+ + + DMY KCG ++ AQ + + I 
Sbjct: 455 YGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIG 514

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N ++ G+S   +  E+   FSEM  +G+K D  +F   +  CANLA I+ GK+
Sbjct: 515 GQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ 574

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  I++ +    +++++++D Y + G +  +  +F+ +  +D  SWN +I GY + G 
Sbjct: 575 IHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGL 634

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ +FE M+++ V  +  +++A+L ACSH GL + G +YF  M     ++P   H+A
Sbjct: 635 GVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFA 694

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGR+   ++AVK I ++P + DA IW  LL  C+I  +VE+   AA ++ +L P 
Sbjct: 695 CMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPD 754

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               YILLSN+YAE+GKW + S+ R L+K    KK PGCSW++ + E+  F+V D+
Sbjct: 755 DSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDK 810



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 169/371 (45%), Gaps = 4/371 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A   F+ + E+N VSW A +A   QN   ++ L+L  EM       +  +
Sbjct: 193 MYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPS 252

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +   +CA    L  G+++HA  I+   + D  +  A+ D+YAK   L  A+  F  + 
Sbjct: 253 YASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 312

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
                + N ++VG  +     E++ LF  M    ++ DVVS  G  SACA      QG++
Sbjct: 313 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQ 372

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + I+      + V N++LD Y +   +  A  IF  +  KDS SWN +I      G 
Sbjct: 373 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGH 432

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D  I  F  M   G+  D  +Y ++L AC+    +E G    D++    +       + 
Sbjct: 433 YDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVAST 492

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGA-WAAEHLFM-LKP 357
           +VD+  + G++++A KL   +  +   + W A+L    +    E    + +E L M LKP
Sbjct: 493 VVDMYCKCGIIDEAQKLHDRIGGQQVVS-WNAILSGFSLNKESEEAQKFFSEMLDMGLKP 551

Query: 358 QHCGYYILLSN 368
            H  +  +L  
Sbjct: 552 DHFTFATVLDT 562



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 164/349 (46%), Gaps = 14/349 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+ +   + A  LF  + + ++VSWNA+V+ + Q  +  +++ L  EM      P+  T 
Sbjct: 93  YSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTF 152

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
             +L +C+    L  G ++HA  ++ GL  D+   +AL DMY KC  L+ A   F  +  
Sbjct: 153 AVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPE 212

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+   I G  Q       L LF EM+ LG+     S+  A  +CA ++ +  G+++
Sbjct: 213 RNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQL 272

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   I+    +   V  +I+D Y ++  +  A + F  LP     + N +++G    G  
Sbjct: 273 HAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLG 332

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPTEMHYA 298
             A+ LF+ M    + +D VS   + +AC+      + K YF   Q    ++K       
Sbjct: 333 IEAMGLFQFMIRSSIRFDVVSLSGVFSACA------ETKGYFQGQQVHCLAIKSGFDVDI 386

Query: 299 C----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           C    ++DL G+   + +A  + + +  + D+  W A++ A    G+ +
Sbjct: 387 CVNNAVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAALEQNGHYD 434



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 1/226 (0%)

Query: 97  NALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155
           N +   Y+  G ++ A  +F+ +   D VS+N L+ GY Q     ES+ LF EM   G+ 
Sbjct: 87  NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
            D  +F   + +C+ L  +  G ++H + ++  L   +   ++++D Y +   +D A   
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 206

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275
           F  +P ++  SW   I G     +    + LF  M+  G+G    SY +   +C+    +
Sbjct: 207 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 266

Query: 276 EKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
             G++       +      +    +VD+  +A  + DA +    LP
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 312



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 40/178 (22%)

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
           FV+N +L  Y R      A ++FD +P +D+ SWNT++  Y   G++ TA+ LF+ M + 
Sbjct: 53  FVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDP 112

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA--------------- 298
               D VS+ A+++     G+ ++    F EM    V P    +A               
Sbjct: 113 ----DVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLG 168

Query: 299 --------------------CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
                                +VD+ G+   ++DA+     +P E +   WGA +  C
Sbjct: 169 VQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMP-ERNWVSWGAAIAGC 225


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 158/421 (37%), Positives = 248/421 (58%), Gaps = 3/421 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  +  +++V W AM+  + Q    LKAL L R+M       + +T
Sbjct: 176 MYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEIT 235

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +V  A  +    R    +H   +  G   D+ + N++  MYAKCG +  A+ VF+ + 
Sbjct: 236 AISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRME 295

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ +S+N ++ GY+Q    +++LSLF++M+      + V+ +  +SAC+ L +   G++
Sbjct: 296 ERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRK 355

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD-C-LPVKDSASWNTLILGYGML 237
           +H   I   +     + N+I+D Y + G +D A ++F+ C L  +D +SWN LI GYG+ 
Sbjct: 356 LHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVH 415

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G    A+ LF  M+ +GV  + +++ +IL+ACSH GL+++G+K F +M   SV+P   HY
Sbjct: 416 GHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMKHY 475

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACMVD+LGRAG + +A +LIK +P  P   +WGALL ACRI+GN ELG  AA +LF L+P
Sbjct: 476 ACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEP 535

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKT 417
           +H GYY+L+SN+YA + KW E   VR+ MKSR  KK    S ++   EV  F   D+   
Sbjct: 536 EHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSP 595

Query: 418 F 418
           +
Sbjct: 596 Y 596



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 170/359 (47%), Gaps = 5/359 (1%)

Query: 27  NAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIR 86
           N M+  +A      +A+ L   M       N+ T   VL  CA       G+ +H +++R
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVR 160

Query: 87  KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSL 145
            G   DLF+  AL DMYAKCG +  A  VF+ +  RD V +  +I  Y Q     ++L L
Sbjct: 161 TGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALML 220

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           F +M+  G   D ++ +   SA   L   +    +HG  +       + V NSI+  Y +
Sbjct: 221 FRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAK 280

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
            G ++ A  +FD +  ++  SWN+++ GY   G    A++LF  M+      +PV+ + +
Sbjct: 281 CGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIM 340

Query: 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV-EP 324
           ++ACS+ G    G+K  + + +  +         ++D+  + G ++ AV++  N  + E 
Sbjct: 341 VSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGER 400

Query: 325 DANIWGALLGACRIYGNVE--LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381
           D + W  L+    ++G+ +  L  ++   +  ++P    +  +LS   + AG  DE  K
Sbjct: 401 DVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSAC-SHAGLIDEGRK 458



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 154/364 (42%), Gaps = 58/364 (15%)

Query: 78  KEIHARIIRKG--LNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR---------DEVSY 126
           K IH+ +  +G  L+   FL   L  +Y+K G L+ A+ +F+             +    
Sbjct: 42  KLIHSSLSTRGFLLHTPHFLAR-LIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLC 100

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           N ++  Y+      E++ L+  M+ +G+  +  ++   +  CA+      G+ +HG  +R
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVR 160

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
               + LFV  +++D Y + G I  A+++FD + ++D   W  +I  Y        A+ L
Sbjct: 161 TGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALML 220

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
           F  M+E+G   D ++ I++ +A    G         D   A SV      YA +   +G 
Sbjct: 221 FRKMQEEGFLGDEITAISVASAVGQLG---------DGRMAISVHG----YAVLNGFIG- 266

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366
                             D ++  +++G     GNVE      +   M +     +  +L
Sbjct: 267 ------------------DVSVGNSIVGMYAKCGNVERARLVFDR--MEERNGISWNSML 306

Query: 367 SNMYAEAGKWDEASKVRELMKSREAKKNP--------GCSWVQTRD---EVQDFVVNDRM 415
           S  Y + G+  +A  +   M++ E   NP         CS++ ++    ++ +FV++ +M
Sbjct: 307 SG-YTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKM 365

Query: 416 KTFT 419
              T
Sbjct: 366 DIDT 369


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 151/416 (36%), Positives = 243/416 (58%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     EA  +F  + +K+ VSWNA++A   QN      +    EM      P+  T
Sbjct: 437 LYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFT 496

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL ACA    L  G  +H ++I+ GL  D F+ + + DMY KCG ++ AQ + + I 
Sbjct: 497 YGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIG 556

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N ++ G+S   +  E+   FSEM  +G+K D  +F   +  CANLA I+ GK+
Sbjct: 557 GQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ 616

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  I++ +    +++++++D Y + G +  +  +F+ +  +D  SWN +I GY + G 
Sbjct: 617 IHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGL 676

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ +FE M+++ V  +  +++A+L ACSH GL + G +YF  M     ++P   H+A
Sbjct: 677 GVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFA 736

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGR+   ++AVK I ++P + DA IW  LL  C+I  +VE+   AA ++ +L P 
Sbjct: 737 CMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPD 796

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               YILLSN+YAE+GKW + S+ R L+K    KK PGCSW++ + E+  F+V D+
Sbjct: 797 DSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDK 852



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 169/371 (45%), Gaps = 4/371 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A   F+ + E+N VSW A +A   QN   ++ L+L  EM       +  +
Sbjct: 235 MYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPS 294

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +   +CA    L  G+++HA  I+   + D  +  A+ D+YAK   L  A+  F  + 
Sbjct: 295 YASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 354

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
                + N ++VG  +     E++ LF  M    ++ DVVS  G  SACA      QG++
Sbjct: 355 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQ 414

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + I+      + V N++LD Y +   +  A  IF  +  KDS SWN +I      G 
Sbjct: 415 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGH 474

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D  I  F  M   G+  D  +Y ++L AC+    +E G    D++    +       + 
Sbjct: 475 YDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVAST 534

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGA-WAAEHLFM-LKP 357
           +VD+  + G++++A KL   +  +   + W A+L    +    E    + +E L M LKP
Sbjct: 535 VVDMYCKCGIIDEAQKLHDRIGGQQVVS-WNAILSGFSLNKESEEAQKFFSEMLDMGLKP 593

Query: 358 QHCGYYILLSN 368
            H  +  +L  
Sbjct: 594 DHFTFATVLDT 604



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 164/349 (46%), Gaps = 14/349 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+ +   + A  LF  + + ++VSWNA+V+ + Q  +  +++ L  EM      P+  T 
Sbjct: 135 YSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTF 194

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
             +L +C+    L  G ++HA  ++ GL  D+   +AL DMY KC  L+ A   F  +  
Sbjct: 195 AVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPE 254

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+   I G  Q       L LF EM+ LG+     S+  A  +CA ++ +  G+++
Sbjct: 255 RNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQL 314

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   I+    +   V  +I+D Y ++  +  A + F  LP     + N +++G    G  
Sbjct: 315 HAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLG 374

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPTEMHYA 298
             A+ LF+ M    + +D VS   + +AC+      + K YF   Q    ++K       
Sbjct: 375 IEAMGLFQFMIRSSIRFDVVSLSGVFSACA------ETKGYFQGQQVHCLAIKSGFDVDI 428

Query: 299 C----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           C    ++DL G+   + +A  + + +  + D+  W A++ A    G+ +
Sbjct: 429 CVNNAVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAALEQNGHYD 476



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 1/226 (0%)

Query: 97  NALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155
           N +   Y+  G ++ A  +F+ +   D VS+N L+ GY Q     ES+ LF EM   G+ 
Sbjct: 129 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 188

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
            D  +F   + +C+ L  +  G ++H + ++  L   +   ++++D Y +   +D A   
Sbjct: 189 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 248

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275
           F  +P ++  SW   I G     +    + LF  M+  G+G    SY +   +C+    +
Sbjct: 249 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 308

Query: 276 EKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
             G++       +      +    +VD+  +A  + DA +    LP
Sbjct: 309 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 354



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 40/178 (22%)

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
           FV+N +L  Y R      A ++FD +P +D+ SWNT++  Y   G++ TA+ LF+ M + 
Sbjct: 95  FVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDP 154

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA--------------- 298
               D VS+ A+++     G+ ++    F EM    V P    +A               
Sbjct: 155 ----DVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLG 210

Query: 299 --------------------CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
                                +VD+ G+   ++DA+     +P E +   WGA +  C
Sbjct: 211 VQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMP-ERNWVSWGAAIAGC 267


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 151/411 (36%), Positives = 247/411 (60%), Gaps = 2/411 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  +  K +VSWN+M+  + QN     A+++ ++M        +VT
Sbjct: 320 MYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVT 379

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +   L ACA    +  G+ +H  + +  L  D+ + N+L  MY+KC  +++A  +F N+ 
Sbjct: 380 VMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQ 439

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N +I+GY+Q    +E++  F +M+L  +K D  + +  I A A L+ + Q K 
Sbjct: 440 HKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKW 499

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG+ IR  L  ++FVA +++D Y + G +  A K+FD +  +   +WN +I GYG  G 
Sbjct: 500 IHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGL 559

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LFE M+++ +  + V+++ +L+ACSH GLVE+G +YF  M+ D  ++P   HY 
Sbjct: 560 GKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYG 619

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            MVDLLGRA  + +A   I+ +P+EP  +++GA+LGACRI+ NVELG  AA  +F L P 
Sbjct: 620 AMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPD 679

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
             GY++LL+N+YA A  WD+ ++VR  M+ +  +K PG S V+ ++EV  F
Sbjct: 680 DGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTF 730



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 149/293 (50%), Gaps = 4/293 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           ++ K     EA+ +F  I +K    ++ M+  +A+N     A+     M      P    
Sbjct: 118 LFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYN 177

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T +L  C     LR GKEIH ++I  G   ++F    + +MYAKC  +  A  +F+ + 
Sbjct: 178 FTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMP 237

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V +N +I GY+Q      +L L   M+  G + D ++ +  + A A++ +++ G+ 
Sbjct: 238 ERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRS 297

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG ++R    + + V+ +++D Y++ G +  A  IFD +  K   SWN++I GY   G+
Sbjct: 298 IHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGD 357

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK---KYFDEMQADS 289
              A+ +F+ M ++ V    V+ +  L AC+  G VE+G+   K  D+++  S
Sbjct: 358 PGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGS 410



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 80/184 (43%), Gaps = 7/184 (3%)

Query: 178 KEIHG---VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           KE+H    + I+  L++       ++  + + G +  A ++F  +  K    ++T++ GY
Sbjct: 91  KELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGY 150

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
                +D A++ F  MR DGV     ++  +L  C     + KGK+   ++  +      
Sbjct: 151 ARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNV 210

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
                +V++  +  L+E+A K+   +P E D   W  ++     Y     G  A E +  
Sbjct: 211 FAMTGVVNMYAKCRLVEEAYKMFDRMP-ERDLVCWNTIISG---YAQNGFGKTALELVLR 266

Query: 355 LKPQ 358
           ++ +
Sbjct: 267 MQEE 270


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 252/441 (57%), Gaps = 33/441 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF------ 55
           Y K +R  +A  +F  + E++ VSWN M++ +AQN   L+A +L  E P+ + F      
Sbjct: 133 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMV 192

Query: 56  ---------------------PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF 94
                                 NSV+   ++    +   +   +E+   +  + ++    
Sbjct: 193 SGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSS--- 249

Query: 95  LTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
             N +   YA+ G +  A+N F+ +  RD +S+  +I GY+Q+    E+L LF EM+  G
Sbjct: 250 -WNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 308

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
            + +  +F   +S CA +AA++ GK++HG  ++  L +  +V N++L  Y + G ID A 
Sbjct: 309 ERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAY 368

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
            +F+ +  K+  SWNT+I GY   G    A+ LFE+M++ G+  D V+ + +L+ACSH G
Sbjct: 369 IVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTG 428

Query: 274 LVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
           LV+KG +YF  M  D  +     HY CM+DLLGRAG ++DA  L+KN+P EPDA  WGAL
Sbjct: 429 LVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGAL 488

Query: 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392
           LGA RI+GN ELG  AA+ +F ++P + G Y+LLSN+YA +G+W +  ++R  M+ R  K
Sbjct: 489 LGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVK 548

Query: 393 KNPGCSWVQTRDEVQDFVVND 413
           K PG SWV+ ++++  F V D
Sbjct: 549 KVPGYSWVEVQNKIHTFTVGD 569



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 143/283 (50%), Gaps = 23/283 (8%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  + E+++VSWNAM++ +AQN    +A ++  EMP      NS++   +L A   
Sbjct: 49  ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPC----KNSISWNGMLAA--- 101

Query: 71  GHFLRPGK-EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
             +++ G+ E   R+     +++L   N +   Y K   L  A+ +F+ +  RDEVS+N 
Sbjct: 102 --YVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNT 159

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +I GY+Q  +  E+  LF E  +     DV ++   +S       + + + +      K+
Sbjct: 160 MISGYAQNGELLEAQRLFEESPV----RDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKN 215

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
             +     N+I+  Y +  R+D A ++F+ +P ++ +SWNT+I GY   G++  A N F+
Sbjct: 216 SVS----WNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFD 271

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
            M +     D +S+ AI+   +  G  E+    F EM+ D  +
Sbjct: 272 RMPQR----DSISWAAIIAGYAQSGYGEEALHLFVEMKRDGER 310



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 2/143 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  I EK +VSWN M+A +A++    +AL L   M      P+ VT
Sbjct: 357 MYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVT 416

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           +  VL AC+    +  G E    + +  G+  +      + D+  + G L+ AQN+  N+
Sbjct: 417 MVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNM 476

Query: 119 SFRDEVSYNILIVGYSQTSDCSE 141
            F  + +    ++G S+    +E
Sbjct: 477 PFEPDAATWGALLGASRIHGNTE 499



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 19/142 (13%)

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N++L  Y ++G +  A +IFD +P K+S SWN ++  Y   G ++ A  LFE+  +    
Sbjct: 65  NAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKAD---- 120

Query: 257 YDPVSYIAILTACSHGGLVEK-----GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
           ++ +S+      C  GG V++      +  FD M     +  E+ +  M+    + G + 
Sbjct: 121 WELISW-----NCMMGGYVKRNRLVDARGIFDRMP----ERDEVSWNTMISGYAQNGELL 171

Query: 312 DAVKLIKNLPVEPDANIWGALL 333
           +A +L +  PV  D   W A++
Sbjct: 172 EAQRLFEESPVR-DVFTWTAMV 192


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 145/403 (35%), Positives = 238/403 (59%), Gaps = 2/403 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + E+++VSWN +V   A+     +AL  VR+M      P+S TL+ VLP  A    
Sbjct: 126 VFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECAD 185

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVG 132
           ++ G E+H    R G + D+F+ ++L DMYA C   + +  VF N+  RD + +N L+ G
Sbjct: 186 VKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAG 245

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
            +Q     E+L +F  M   G++   V+F   I  C NLA+++ GK++H   I      +
Sbjct: 246 CAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDN 305

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +F+++S++D Y + G I +A+ IFD +   D  SW  +I+GY + G    A+ LFE M  
Sbjct: 306 VFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMEL 365

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLME 311
                + ++++A+LTACSH GLV+KG KYF  M     + PT  H+A + D LGRAG ++
Sbjct: 366 GNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELD 425

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371
           +A   I  + ++P A++W  LL ACR++ N  L    A+ +  L+P+  G +++LSNMY+
Sbjct: 426 EAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYS 485

Query: 372 EAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            +G+W+EA+ +RE M+ +  KK+P CSW++ + ++  FV +DR
Sbjct: 486 ASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDR 528



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 146/330 (44%), Gaps = 23/330 (6%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL-------- 111
           +L   L +CA       G  +HA  IR G   D F  NAL ++Y K  C  L        
Sbjct: 52  SLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIV 111

Query: 112 -----------AQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
                       + VF+ +  RD VS+N L++G ++     E+L    +M   G + D  
Sbjct: 112 DVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSF 171

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           +    +   A  A +K+G E+HG   R    + +FV +S++D Y    R D + K+FD L
Sbjct: 172 TLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNL 231

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
           PV+D   WN+L+ G    G V+ A+ +F  M + GV   PV++ +++  C +   +  GK
Sbjct: 232 PVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGK 291

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
           +    +     +      + ++D+  + G +  A  +   +   PD   W A++    ++
Sbjct: 292 QLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMS-SPDVVSWTAMIMGYALH 350

Query: 340 GNVELGAWAAEHLFM--LKPQHCGYYILLS 367
           G         E + +   KP H  +  +L+
Sbjct: 351 GPAREALVLFERMELGNAKPNHITFLAVLT 380



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 147/303 (48%), Gaps = 38/303 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA  +R   +  +F N+  ++ + WN+++A  AQN    +AL + R M      P  VT
Sbjct: 214 MYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVT 273

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++++P C     LR GK++HA +I  G   ++F++++L DMY KCG +++A  +F+ +S
Sbjct: 274 FSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMS 333

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
             D VS+  +I+GY+      E+L LF  M L   K + ++F+  ++AC++   + +G K
Sbjct: 334 SPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWK 393

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILG---- 233
               ++    +   L    ++ D   R+G +D A      + +K +AS W+TL+      
Sbjct: 394 YFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVH 453

Query: 234 ------------------------------YGMLGEVDTAINLFEAMREDGVGYDPV-SY 262
                                         Y   G  + A +L E+MR+ G+  DP  S+
Sbjct: 454 KNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSW 513

Query: 263 IAI 265
           I +
Sbjct: 514 IEV 516



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 22/224 (9%)

Query: 141 ESLSLFSEMRLLGMKHDVV--SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
           +++SLF  MR        V  S   A+ +CA L     G  +H + IR       F AN+
Sbjct: 31  DAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANA 90

Query: 199 ILDFYTR-------------------SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +L+ Y +                   S   +   K+FD +  +D  SWNTL+LG    G 
Sbjct: 91  LLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGR 150

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+     M  +G   D  +   +L   +    V++G +       +         + 
Sbjct: 151 HHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSS 210

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           ++D+       + +VK+  NLPV  D  +W +LL  C   G+VE
Sbjct: 211 LIDMYANCTRTDYSVKVFDNLPVR-DHILWNSLLAGCAQNGSVE 253


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  297 bits (760), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 146/403 (36%), Positives = 243/403 (60%), Gaps = 2/403 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + EK++VSWN +V   A++    +AL LVREM      P+S TL++VLP  A G  
Sbjct: 129 VFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGAD 188

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVG 132
           +R G E+H    R G + D+F+ ++L DMYA C   + +  VF N+  RD + +N ++ G
Sbjct: 189 VRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAG 248

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
            +Q     E+L LF  M   G+K   V+F   I AC NLA++  GK++H   IR     +
Sbjct: 249 CAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGN 308

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +F+++S++D Y + G + +A +IFD +   D  SW  +I+G+ + G    A+ LF+ M  
Sbjct: 309 VFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMEL 368

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLME 311
             +  + ++++A+LTACSH GLV+KG KYF+ M     + P+  H+A + D LGR G +E
Sbjct: 369 GNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLE 428

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371
           +A   I  + ++P A++W  LL AC+++ N  L    A+ +F L+P+  G +I+LSN Y+
Sbjct: 429 EAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYS 488

Query: 372 EAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            +G+W+EA+ +R+ M+ +  +K P CSW++ +++   FV +D+
Sbjct: 489 SSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDK 531



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 149/326 (45%), Gaps = 18/326 (5%)

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC---------- 108
            +L   L +CA       G  +HA  +R G   D F  NAL ++Y K             
Sbjct: 59  TSLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDG 118

Query: 109 ----LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMG 163
               L   + VF+ +  +D VS+N L++G +++    E+L L  EM   G K D  +   
Sbjct: 119 SAVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSS 178

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
            +   A  A +++G E+HG   R   H  +FV +S++D Y    R D + K+FD LPV+D
Sbjct: 179 VLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRD 238

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283
           +  WN+++ G    G VD A+ LF  M   G+   PV++ +++ AC +   +  GK+   
Sbjct: 239 AILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHA 298

Query: 284 EMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            +            + ++D+  + G +  A ++   +   PD   W A++    ++G   
Sbjct: 299 YVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQ-SPDIVSWTAMIMGHALHGPAR 357

Query: 344 --LGAWAAEHLFMLKPQHCGYYILLS 367
             L  +    L  LKP H  +  +L+
Sbjct: 358 EALVLFDRMELGNLKPNHITFLAVLT 383



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 132/234 (56%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA  +R   +  +F N+  ++ + WN+M+A  AQN    +AL L R M      P  VT
Sbjct: 217 MYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVT 276

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++++PAC     L  GK++HA +IR G + ++F++++L DMY KCG +++A+ +F+ I 
Sbjct: 277 FSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQ 336

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
             D VS+  +I+G++      E+L LF  M L  +K + ++F+  ++AC++   + +G K
Sbjct: 337 SPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWK 396

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
             + ++    +   L    ++ D   R G+++ A      + +K +AS W+TL+
Sbjct: 397 YFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLL 450



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 19/228 (8%)

Query: 134 SQTSDCSESLSLFSEMRL----LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           +   D   +++LF  MR           + S  GA+ +CA L     G  +H + +R   
Sbjct: 30  ASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASLHALALRSGA 89

Query: 190 HTHLFVANSILDFYTR--------------SGRIDLANKIFDCLPVKDSASWNTLILGYG 235
               F AN++L+ Y +              +  ++   K+FD +P KD  SWNTL+LG  
Sbjct: 90  FADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSWNTLVLGCA 149

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G    A+ L   M  DG   D  +  ++L   + G  V +G +       +       
Sbjct: 150 ESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVF 209

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             + ++D+       + +VK+  NLPV  DA +W ++L  C   G+V+
Sbjct: 210 VGSSLIDMYANCTRTDYSVKVFDNLPVR-DAILWNSMLAGCAQNGSVD 256


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  297 bits (760), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 153/416 (36%), Positives = 250/416 (60%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K +   +A  +F  + E+++++WNA+++  +QN  + +A  L   M       N  T
Sbjct: 256 MYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTT 315

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS- 119
           L+ VL + A        ++IHA  ++ G  FD ++ N+L D Y KCG +  A  VF  S 
Sbjct: 316 LSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESP 375

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V +  L+  Y+Q     E+L L+ EM+  G+K D       ++ACA+L+A +QGK+
Sbjct: 376 IVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQ 435

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++    + +F  NS+++ Y + G I+ A+  F  +PV+   SW+ +I G    G 
Sbjct: 436 VHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGY 495

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYA 298
              A+ LF+ M + GV  + ++ +++L AC+H GLV + K YF+ M+    ++P + HYA
Sbjct: 496 GKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYA 555

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLGRAG +E A++L+  +P + +A +WGALLGA RI+ N++LG  AAE L  L+P+
Sbjct: 556 CMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPE 615

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G ++LL+N+YA  G WD+ ++VR LMK  + KK PG SW++ +D+V  F+V DR
Sbjct: 616 KSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDR 671



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 176/341 (51%), Gaps = 2/341 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +AS +F  IA+ +IVSWNA++A    +    +AL+L+REM      PN  T
Sbjct: 155 MYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFT 214

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
           L++ L ACA       G+++H+ +I+  +  D FL   L DMY+KC  ++ A+ VF +  
Sbjct: 215 LSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMP 274

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +++N +I G+SQ  +  E+ SLF  M   G+  +  +    + + A L A    ++
Sbjct: 275 ERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQ 334

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH ++++       +V NS++D Y + G ++ A ++F+  P+ D   + +L+  Y   G+
Sbjct: 335 IHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQ 394

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ L+  M++ G+  D     ++L AC+     E+GK+    +              
Sbjct: 395 GEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNS 454

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           +V++  + G +EDA      +PV    + W A++G    +G
Sbjct: 455 LVNMYAKCGSIEDASCAFSRIPVRGIVS-WSAMIGGLAQHG 494



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 197/429 (45%), Gaps = 62/429 (14%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK     +A  LF  I ++++VSWNA+ + +  + +  +A+ L  +M +    PN  +
Sbjct: 54  LYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFS 113

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L++++  C        G++IH  +I+ G + D F  NAL DMYAK G L  A +VF+ I+
Sbjct: 114 LSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA 173

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VS+N +I G         +L L  EM   GM  ++ +   A+ ACA +A  + G++
Sbjct: 174 KPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQ 233

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+  + +  F+   ++D Y++   +D A  +F  +P +D  +WN +I G+    E
Sbjct: 234 LHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEE 293

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQAD 288
            + A +LF  M  +G+G++  +   +L + +           H   ++ G + FD    +
Sbjct: 294 DEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFE-FDNYVVN 352

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP--------------------------- 321
           S          ++D  G+ G +EDA ++ +  P                           
Sbjct: 353 S----------LIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLY 402

Query: 322 -------VEPDANIWGALLGACRIYGNVELGAWAAEHLF---MLKPQHCGYYILLSNMYA 371
                  ++PD+ +  +LL AC      E G     H+     +     G  ++  NMYA
Sbjct: 403 LEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLV--NMYA 460

Query: 372 EAGKWDEAS 380
           + G  ++AS
Sbjct: 461 KCGSIEDAS 469



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 137/278 (49%), Gaps = 2/278 (0%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N     +VL AC     L  GK++H  ++  G + D F+ N+L  +YAKCG    A+++F
Sbjct: 9   NEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLF 68

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           + I  R  VS+N L   Y  +    E++SLF +M L G++ +  S    I+ C  L    
Sbjct: 69  DAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSV 128

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           QG++IHG  I+    +  F AN+++D Y + G ++ A+ +FD +   D  SWN +I G  
Sbjct: 129 QGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCV 188

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
           +      A+ L   M + G+  +  +  + L AC+   L E G++    +    +     
Sbjct: 189 LHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSF 248

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
               ++D+  +   M+DA  + K +P E D   W A++
Sbjct: 249 LGVGLIDMYSKCNSMDDARLVFKLMP-ERDMIAWNAVI 285



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 7/194 (3%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M LLG+K +  +F   + AC     +  GK++HG+ +     +  FVANS++  Y + G 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 209 IDLANKIFDCLPVKDSASWNTLILGY---GMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
              A  +FD +P +   SWN L   Y    M GE   A++LF  M   G+  +  S  ++
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGE---AVSLFHDMVLSGIRPNEFSLSSM 117

Query: 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD 325
           +  C+      +G+K    +              +VD+  + G++EDA  +   +  +PD
Sbjct: 118 INVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEI-AKPD 176

Query: 326 ANIWGALLGACRIY 339
              W A++  C ++
Sbjct: 177 IVSWNAIIAGCVLH 190


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  297 bits (760), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 146/405 (36%), Positives = 256/405 (63%), Gaps = 4/405 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  +  ++++SWN+++  +  N   L+A+ L +EM +    P+ +TL ++    ++   
Sbjct: 222 VFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGD 281

Query: 74  LRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
           +R  + +    +RKG    D+ + NA+  MYAK G ++ A+ VFN +   D +S+N +I 
Sbjct: 282 IRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIIS 341

Query: 132 GYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH 190
           GY+Q    SE++ +++ M   G +  +  +++  + AC+   A++QG ++HG  ++  L+
Sbjct: 342 GYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLY 401

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
             +FV  S+ D Y + GR++ A  +F  +P  +S  WNTLI  +G  G  + A+ LF+ M
Sbjct: 402 LDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEM 461

Query: 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGL 309
            ++GV  D ++++ +L+ACSH GLV++G+  F+ MQ D  + P+  HY CMVD+ GRAG 
Sbjct: 462 LDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQ 521

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNM 369
           +E A+K IK++ ++PDA+IWGALL ACR++GNV+LG  A+EHLF ++P+H GY++LLSNM
Sbjct: 522 LETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNM 581

Query: 370 YAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           YA AGKW+   ++R +   +  +K PG S ++  ++V+ F   ++
Sbjct: 582 YASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQ 626



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 187/396 (47%), Gaps = 32/396 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL---VREMPIHNEFPN 57
           +Y++      A  LF  +  +++ SWNAM++ + Q+    +AL L   +R M       +
Sbjct: 127 LYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM-------D 179

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           SVT+ ++L AC        G  IH+  I+ GL  +L               L   Q VF+
Sbjct: 180 SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESEL---------------LRDCQKVFD 224

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  RD +S+N +I  Y        ++SLF EMRL  ++ D ++ +   S  + L  I+ 
Sbjct: 225 RMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRA 284

Query: 177 GKEIHGVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            + + G T+RK      + + N+++  Y + G +D A  +F+ LP  D  SWNT+I GY 
Sbjct: 285 CRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYA 344

Query: 236 MLGEVDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
             G    AI ++  M E+G +  +  +++++L ACS  G + +G K    +  + +    
Sbjct: 345 QNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDV 404

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF- 353
                + D+ G+ G +EDA+ L   +P   ++  W  L+     +G+ E      + +  
Sbjct: 405 FVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLD 463

Query: 354 -MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
             +KP H  +  LLS   + +G  DE     E+M++
Sbjct: 464 EGVKPDHITFVTLLSAC-SHSGLVDEGQWCFEMMQT 498



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 140/272 (51%), Gaps = 23/272 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MYAK      A  +F+ +   +++SWN +++ +AQN    +A+++   M    E   N  
Sbjct: 311 MYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQG 370

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T  +VLPAC++   LR G ++H R+++ GL  D+F+  +L DMY KCG L  A ++F  I
Sbjct: 371 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQI 430

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG- 177
              + V +N LI  +       +++ LF EM   G+K D ++F+  +SAC++   + +G 
Sbjct: 431 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQ 490

Query: 178 ------KEIHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNT 229
                 +  +G+T   KH          ++D Y R+G+++ A K    + ++  AS W  
Sbjct: 491 WCFEMMQTDYGITPSLKHY-------GCMVDMYGRAGQLETALKFIKSMSLQPDASIWGA 543

Query: 230 LILGYGMLGEVD----TAINLFEAMREDGVGY 257
           L+    + G VD     + +LFE   E  VGY
Sbjct: 544 LLSACRVHGNVDLGKIASEHLFEVEPEH-VGY 574



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 128/263 (48%), Gaps = 24/263 (9%)

Query: 13  YLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACARG 71
           + F +I  +++ +WN M++ + +     + ++      + +   P+  T  +VL AC   
Sbjct: 40  HTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC--- 96

Query: 72  HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILI 130
             +  G +IH   ++ G  +D+++  +L  +Y++   +  A+ +F+ +  RD  S+N +I
Sbjct: 97  RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMI 156

Query: 131 VGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH 190
            GY Q+ +  E+L+L + +R +    D V+ +  +SAC       +G  IH  +I+  L 
Sbjct: 157 SGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLE 212

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
           + L                    K+FD + V+D  SWN++I  Y +  +   AI+LF+ M
Sbjct: 213 SELLRD---------------CQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM 257

Query: 251 REDGVGYDPVSYIAILTACSHGG 273
           R   +  D ++ I++ +  S  G
Sbjct: 258 RLSRIQPDCLTLISLASILSQLG 280



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 8/163 (4%)

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAAIK 175
           +I  RD  ++N++I GY +  + SE +  FS   L  G+  D  +F   + AC     + 
Sbjct: 44  HIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRT---VI 100

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G +IH + ++      ++VA S++  Y+R   +  A  +FD +PV+D  SWN +I GY 
Sbjct: 101 DGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYC 160

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
             G    A+ L   +R      D V+ +++L+AC+  G   +G
Sbjct: 161 QSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRG 199


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 149/417 (35%), Positives = 245/417 (58%), Gaps = 2/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     EA  +F  + +++ VSWNA++A   QN      +  + EM  +   P+  T
Sbjct: 382 LYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFT 441

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL ACA    L  G  +H + I+ GL  D F+++ + DMY KCG +  AQ + + I 
Sbjct: 442 YGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIG 501

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N +I G+S      E+   FSEM  +G+K D  ++   +  CANLA I+ GK+
Sbjct: 502 GQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQ 561

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  I++ +    +++++++D Y + G +  +  +F+     D  SWN +I GY + G+
Sbjct: 562 IHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQ 621

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ +FE M++  V  +  +++A+L ACSH GL++ G +YF  M +   ++P   H+A
Sbjct: 622 GFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFA 681

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGR+   ++A+K I+++P+E DA IW  LL  C+I  +VE+   AA ++  L P 
Sbjct: 682 CMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPD 741

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
               YILLSN+YAE+GKW + S+ R LM+    KK PGCSW++ + E+  F+  D++
Sbjct: 742 DSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLAGDKV 798



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 159/341 (46%), Gaps = 14/341 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA +     A+ LF  + + ++VSWNA+++ + Q  +   ++ L  EM      P+  TL
Sbjct: 80  YAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTL 139

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             +L AC     L  G +IHA  ++ GL  D+   +AL DMY KC  L  A   F+ +  
Sbjct: 140 AVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGE 199

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+   I G  Q    +  L LF +M+ LG+     ++     +CA +  +   +++
Sbjct: 200 RNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQL 259

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   I+        V  +I+D Y ++  +  A + F  LP     + N +++G    G  
Sbjct: 260 HAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLG 319

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPTEMHYA 298
             A+ LF+ M   G+G+D VS   + +AC+      + K Y   +Q    ++K       
Sbjct: 320 AEALQLFQFMTRSGIGFDVVSLSGVFSACA------EVKGYLQGLQVHCLAIKSGFDVDV 373

Query: 299 C----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           C    ++DL G+   + +A  + + +  + D+  W A++ A
Sbjct: 374 CVRNAILDLYGKCKALVEAYLVFQEME-QRDSVSWNAIIAA 413



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 184/437 (42%), Gaps = 45/437 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A   FH + E+N VSW A +A   QN    + L+L  +M       +   
Sbjct: 180 MYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPA 239

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +V  +CA    L   +++HA  I+   + D  +  A+ D+YAK   L  A+  F ++ 
Sbjct: 240 YASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLP 299

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
                + N ++VG  +T   +E+L LF  M   G+  DVVS  G  SACA +    QG +
Sbjct: 300 NHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQ 359

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + I+      + V N+ILD Y +   +  A  +F  +  +DS SWN +I        
Sbjct: 360 VHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNEC 419

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            +  I     M   G+  D  +Y ++L AC+    +E G     +     +       + 
Sbjct: 420 YEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSST 479

Query: 300 MVDLLGRAGLMEDAVKL----------------------------------IKNLPVEPD 325
           +VD+  + G++ +A KL                                  + ++ V+PD
Sbjct: 480 VVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPD 539

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG-YYI--LLSNMYAEAGKWDEASKV 382
              +  +L  C     +ELG     H  ++K +  G  YI   L +MYA+ G   ++   
Sbjct: 540 HFTYATVLDTCANLATIELGKQI--HGQIIKQEMLGDEYISSTLVDMYAKCGNMPDS--- 594

Query: 383 RELMKSREAKKNPGCSW 399
             L+   +A+K    SW
Sbjct: 595 --LLMFEKAQKLDFVSW 609



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 122/298 (40%), Gaps = 34/298 (11%)

Query: 58  SVTLTNVLPACARG--HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           + T +++   CA      L  G+  HAR++  G     F++N L  MYA+CG    A+ V
Sbjct: 2   TATFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGV 61

Query: 116 FNI-SFRDEVSYNI-------------------------------LIVGYSQTSDCSESL 143
           F++   RD VS+N                                L+ GY Q     +S+
Sbjct: 62  FDVMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSV 121

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203
            L  EM   G+  D  +    + AC  L  +  G +IH V ++  L   +   ++++D Y
Sbjct: 122 GLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMY 181

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
            +   ++ A + F  +  ++S SW   I G     +    + LF  M+  G+G    +Y 
Sbjct: 182 GKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYA 241

Query: 264 AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
           ++  +C+    +   ++       +      +    +VD+  +A  + DA +   +LP
Sbjct: 242 SVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLP 299


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 154/403 (38%), Positives = 246/403 (61%), Gaps = 10/403 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  R  +A  +F  +  +++VSWN+++A + QN   + AL   +EM      P+ +T
Sbjct: 292 MYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLT 351

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           + ++     +    R G+ +H  ++R + L  D+ + NAL +MYAK G ++ A+ VF  +
Sbjct: 352 VVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQL 411

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMR----LLGMKHDVVSFMGAISACANLAAI 174
             RD +S+N LI GY+Q    SE++  ++ M     ++  +   VS + A S   ++ A+
Sbjct: 412 PSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYS---HVGAL 468

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           +QG +IHG  I+  L   +FVA  ++D Y + GR++ A  +F  +P + S  WN +I   
Sbjct: 469 QQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSL 528

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
           G+ G  + A+ LF+ MR DGV  D ++++++L+ACSH GLV++ +  FD MQ +  +KP 
Sbjct: 529 GIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPN 588

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY CMVDL GRAG +E A  L+ N+P++ DA+IWG LL ACRI+GN ELG +A++ L 
Sbjct: 589 LKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLL 648

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPG 396
            +  ++ GYY+LLSN+YA  GKW+ A KVR L + R  +K PG
Sbjct: 649 EVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPG 691



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 142/267 (53%), Gaps = 5/267 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           +YA     + +S  F +I  KNI SWN+MV+ + +      ++  V E+  +    P+  
Sbjct: 92  LYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFY 151

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T   VL AC     L  G+++H  +++ G   D+++  +L  +Y++ G + +A  VF ++
Sbjct: 152 TFPPVLKACLS---LADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDM 208

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD  S+N +I G+ Q  + +E+L +   M+   +K D V+    +  CA    +  G 
Sbjct: 209 PVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGV 268

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H   I+  L + +FV+N++++ Y++ GR+  A ++FD + V+D  SWN++I  Y    
Sbjct: 269 LVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQND 328

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAI 265
           +  TA+  F+ M   G+  D ++ +++
Sbjct: 329 DPVTALGFFKEMLFVGMRPDLLTVVSL 355



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 132/261 (50%), Gaps = 6/261 (2%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQ 135
            K++HA ++  G   D+ L   L  +YA  G L+L+   F +I  ++  S+N ++  Y +
Sbjct: 67  AKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVR 126

Query: 136 TSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
                +S+   +E+  L G++ D  +F   + AC +LA    G+++H   ++      ++
Sbjct: 127 RGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLA---DGEKMHCWVLKMGFEHDVY 183

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           VA S++  Y+R G +++A+K+F  +PV+D  SWN +I G+   G V  A+ + + M+ + 
Sbjct: 184 VAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEE 243

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
           V  D V+  ++L  C+    V  G      +    ++        ++++  + G ++DA 
Sbjct: 244 VKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQ 303

Query: 315 KLIKNLPVEPDANIWGALLGA 335
           ++   + V  D   W +++ A
Sbjct: 304 RVFDGMEVR-DLVSWNSIIAA 323



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 8/177 (4%)

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
           +C N   I   K++H + +       + +   ++  Y   G + L++  F  +  K+  S
Sbjct: 60  SCTN---INVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFS 116

Query: 227 WNTLILGYGMLGEVDTAIN-LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           WN+++  Y   G    +++ + E +   GV  D  ++  +L AC      EK   +  +M
Sbjct: 117 WNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVLKM 176

Query: 286 QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
                +      A ++ L  R G +E A K+  ++PV  D   W A++      GNV
Sbjct: 177 ---GFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVR-DVGSWNAMISGFCQNGNV 229


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 160/450 (35%), Positives = 249/450 (55%), Gaps = 39/450 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVT 60
           Y +      A  +F  +  K  V WNAM++ + Q+ +   A +L R M +  + P +  T
Sbjct: 244 YVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRM-VSEKVPLDEFT 302

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF----DLFLTNALTDMYAK----------- 105
            T+VL ACA   F   GK +H +IIR   NF     L + NAL  +Y+K           
Sbjct: 303 FTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIF 362

Query: 106 --------------------CGCLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSESLS 144
                                GCL+ A  VF +  +++++S+ +++ GY       ++L 
Sbjct: 363 DTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALK 422

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
           LF++MR   +K    ++ GAI+AC  L A+K G+++H   ++          N++L  Y 
Sbjct: 423 LFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYA 482

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           + G ++ A  +F  +P  DS SWN +I   G  G    A+ LF+ M  +G+  D +S++ 
Sbjct: 483 KCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLT 542

Query: 265 ILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
           ILTAC+H GLV++G  YF+ M+ D  + P E HYA ++DLLGR+G + +A  LIK +P E
Sbjct: 543 ILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFE 602

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVR 383
           P  +IW A+L  CR  G++E GA+AA+ LF + PQH G YILLSN Y+ AG+W +A++VR
Sbjct: 603 PTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVR 662

Query: 384 ELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +LM+ R  KK PGCSW++   ++  F+V D
Sbjct: 663 KLMRDRGVKKEPGCSWIEVGSKIHVFLVGD 692



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 173/363 (47%), Gaps = 48/363 (13%)

Query: 2   YAKSSRPAEASYLFHNI--AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNS 58
           +A + R  +A+  F  +  A ++ V  NAM++ FA+  L   A+ +   +       P+ 
Sbjct: 104 HAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDD 163

Query: 59  VTLTNVLPACARGHFLRPG--KEIHARIIRKGLNFDLFLTNALTDMYAKC---------- 106
            + T ++ A  + H L      ++H  +++ G    L ++NAL  +Y KC          
Sbjct: 164 YSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDAR 223

Query: 107 ------------------------GCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSE 141
                                   G +N A++VF  +  + +V +N +I GY Q+  C++
Sbjct: 224 KVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCAD 283

Query: 142 SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH----THLFVAN 197
           +  LF  M    +  D  +F   +SACAN      GK +HG  IR   +      L V N
Sbjct: 284 AFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNN 343

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
           +++  Y++ G+I +A +IFD + +KD  SWNT++ GY   G +D A+ +F+ M       
Sbjct: 344 ALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK---- 399

Query: 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317
           + +S++ +++   HGGL E   K F++M+A+ VKP +  YA  +   G  G ++   +L 
Sbjct: 400 NDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLH 459

Query: 318 KNL 320
            +L
Sbjct: 460 AHL 462



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 123/281 (43%), Gaps = 46/281 (16%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF----- 55
           +Y+K  +   A  +F  +  K++VSWN +++ +  +    KA+++ + MP  N+      
Sbjct: 348 LYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVM 407

Query: 56  --------------------------PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
                                     P   T    + AC     L+ G+++HA +++ G 
Sbjct: 408 VSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGF 467

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVGYSQTSDCSESLSLFSE 148
                  NAL  MYAKCG +N A+ VF +    D VS+N +I    Q     E+L LF +
Sbjct: 468 EASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQ 527

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQG-------KEIHGVTIRKHLHTHLFVANSILD 201
           M   G+  D +SF+  ++AC +   + +G       K   G++  +  +  L      +D
Sbjct: 528 MVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARL------ID 581

Query: 202 FYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGMLGEVD 241
              RSGRI  A  +   +P + + S W  ++ G    G+++
Sbjct: 582 LLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDME 622


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 151/417 (36%), Positives = 250/417 (59%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK    +     F  +A K+++SW    A +AQN+  L+AL+L+R++ +     ++  
Sbjct: 305 MYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATM 364

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + ++L AC   + L   KEIH   IR GL+ D  L N + D+Y +CG ++ A  +F +I 
Sbjct: 365 IGSILLACRGLNCLGKIKEIHGYTIRGGLS-DPVLQNTIIDVYGECGIIDYAVRIFESIE 423

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+  +I  Y      +++L +FS M+  G++ D V+ +  +SA  +L+ +K+GKE
Sbjct: 424 CKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKE 483

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  IRK       ++N+++D Y R G ++ A KIF C   ++   W  +I  YGM G 
Sbjct: 484 IHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGY 543

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A+ LF  M+++ +  D ++++A+L ACSH GLV +GK + + M+ +  ++P   HY 
Sbjct: 544 GEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYT 603

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGR   +E+A +++K++  EP   +W ALLGACRI+ N E+G  AAE L  L   
Sbjct: 604 CLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLD 663

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           + G Y+L+SN++A  G+W +  +VR  MK     KNPGCSW++  +++  F+  D++
Sbjct: 664 NPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKL 720



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/394 (30%), Positives = 203/394 (51%), Gaps = 14/394 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +  +  EA+ +F N+  K+IV+WN+M+  F QN L  +AL+   ++   +  P+ V+
Sbjct: 204 MYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVS 263

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
           + +++ A  R  +L  GKEIHA  I+ G + ++ + N L DMYAKC C++     F++ +
Sbjct: 264 IISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMA 323

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+     GY+Q     ++L L  ++++ GM  D       + AC  L  + + KE
Sbjct: 324 HKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKE 383

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG TIR  L   + + N+I+D Y   G ID A +IF+ +  KD  SW ++I  Y   G 
Sbjct: 384 IHGYTIRGGLSDPV-LQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGL 442

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ +F +M+E G+  D V+ ++IL+A      ++KGK+    +              
Sbjct: 443 ANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNT 502

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM----- 354
           +VD+  R G +EDA K+        +  +W A++ A  ++G  E    AA  LFM     
Sbjct: 503 LVDMYARCGSVEDAYKIF-TCTKNRNLILWTAMISAYGMHGYGE----AAVELFMRMKDE 557

Query: 355 -LKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
            + P H  +  LL    + +G  +E     E+MK
Sbjct: 558 KIIPDHITFLALLYAC-SHSGLVNEGKSFLEIMK 590



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 202/428 (47%), Gaps = 40/428 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  ++E++I +WNAM+  +  N   L AL++ REM       +S T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
              +L AC     L  G EIH   I+ G +  +F+ N+L  +YAKC  +N A+ +F+  +
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 121 --RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              D VS+N +I  YS    C+E+L LFSEM   G+  +  +F  A+ AC + + IK G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH   ++      ++VAN+++  Y R G++  A  IF  L  KD  +WN+++ G+   G
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY--------FDEMQADSV 290
               A+  F  ++   +  D VS I+I+ A    G +  GK+         FD       
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGN 300

Query: 291 KPTEMHYACMV--------DLLGRAGLME---------------DAVKLIKNLPVEP--- 324
              +M+  C          DL+    L+                 A++L++ L +E    
Sbjct: 301 TLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDV 360

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWDEASKV 382
           DA + G++L ACR  G   LG     H + ++       +   + ++Y E G  D A ++
Sbjct: 361 DATMIGSILLACR--GLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRI 418

Query: 383 RELMKSRE 390
            E ++ ++
Sbjct: 419 FESIECKD 426


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 158/418 (37%), Positives = 248/418 (59%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAEASYLF-HNIAEKNI-VSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY K S  A A  +F  N   +N+ V +NA++A ++ N     A+ L R+M       N+
Sbjct: 100 MYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNA 159

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           VT+  ++P CA    L  G  +HA  +R GL+ DL + N L  MY +CG ++ A+ +F+ 
Sbjct: 160 VTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDG 219

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  +  +++N +I GY+Q       L L+ +M   G+  D V+ +G +S+CA+L A   G
Sbjct: 220 MPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAG 279

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           +E+           + F+ N++++ Y R G +  A  IFD +  K+  SW  +I GYGM 
Sbjct: 280 REVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMH 339

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G+ + A+ LF+ M       D  +++++L+ACSH GL EKG  YF  M+ D  ++P   H
Sbjct: 340 GQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEH 399

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y+C+VDLLGRAG +E+A KLI ++ VEPD  +WGALLGAC+I+ NVEL   A E +   +
Sbjct: 400 YSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFE 459

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P + GYY+LLSN+++EAG  +   +VR +M+ R+ KK PGCS+V+ +  +  F+  DR
Sbjct: 460 PTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDR 517



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 155/328 (47%), Gaps = 4/328 (1%)

Query: 20  EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79
           +    SWNA +   A+ R   +AL L  +M    + PN+ T      +CA       G +
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDE---VSYNILIVGYSQT 136
           +H  +I+ G   + F+  +L  MY KC  +  A+ VF+ +       V YN LI GYS  
Sbjct: 78  LHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLN 137

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
           S  S+++ LF +MR  G+  + V+ +G I  CA    +  G  +H  ++R  L   L V 
Sbjct: 138 SRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVG 197

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N +L  Y R G +D A K+FD +P K   +WN +I GY   G     ++L+  M   G+ 
Sbjct: 198 NCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIV 257

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            DPV+ + +L++C+H G    G++    ++             ++++  R G +  A  +
Sbjct: 258 PDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAI 317

Query: 317 IKNLPVEPDANIWGALLGACRIYGNVEL 344
              +  E +   W A++    ++G  EL
Sbjct: 318 FDGM-TEKNVISWTAIIAGYGMHGQGEL 344


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  296 bits (759), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 153/395 (38%), Positives = 231/395 (58%), Gaps = 5/395 (1%)

Query: 21  KNIVSWNAMVANFAQNRLELKALQLVREMPIHNE---FPNSVTLTNVLPACARGHFLRPG 77
           KN V+W+AMV  +       +AL+L  ++ +  +     ++VTL  V+  CA    L  G
Sbjct: 285 KNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTG 344

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
             +H   I+ G   DL + N L  MYAKCG +N A   FN +  RD VS+  +I GY Q 
Sbjct: 345 TCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQN 404

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
            +  E L +F EM+L G+  +  +    + ACA+LA +  G   H   I         + 
Sbjct: 405 GNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMIC 464

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N+++D Y + G+ID A K+FD +  +   SWNT+I+ YG+ G    A+ LF+ M+ +G+ 
Sbjct: 465 NALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLK 524

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVK 315
            D V++I +++ACSH GLV +GK +F+ M  D  + P   HYACMVDLL RAGL ++   
Sbjct: 525 PDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHS 584

Query: 316 LIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGK 375
            I+ +P+EPD  +WGALL ACR+Y NVELG   ++ +  L P+  G ++LLSNMY+  G+
Sbjct: 585 FIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGR 644

Query: 376 WDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
           WD+A++VR   K +  +K+PGCSW++    V  F+
Sbjct: 645 WDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFL 679



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 201/445 (45%), Gaps = 70/445 (15%)

Query: 1   MYAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           +Y   S    A ++F  +    KN+V WN ++  +A N    +A+ L  +M  +   PN 
Sbjct: 60  LYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNR 119

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T   VL AC+       G+EIH  I R  L  +++++ AL D YAKCGCL+ A+ VF+ 
Sbjct: 120 FTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDK 179

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV----VSFMGAISACANLAA 173
           +  RD V++N +I G+S      + ++      L+ M++DV     + +G + A A + +
Sbjct: 180 MHKRDVVAWNSMISGFSLHEGSYDEVARL----LVQMQNDVSPNSSTIVGVLPAVAQVNS 235

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLIL 232
           ++ GKEIHG  +R+     + V   ILD Y +   ID A +IFD +  VK+  +W+ ++ 
Sbjct: 236 LRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVG 295

Query: 233 GYGMLGEVDTAINLF---EAMREDGVGYDPVSYIAILTACSH------------------ 271
            Y +   +  A+ LF     +++D +    V+   ++  C++                  
Sbjct: 296 AYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSG 355

Query: 272 -----------------GGLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDA 313
                             G++    ++F+EM   D+V      +  ++    + G  E+ 
Sbjct: 356 FVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVS-----FTAIISGYVQNGNSEEG 410

Query: 314 VKLIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI------ 364
           +++   +    + P+     ++L AC     +  G  +  H + +    CG+        
Sbjct: 411 LRMFLEMQLSGINPEKATLASVLPACAHLAGLHYG--SCSHCYAII---CGFTADTMICN 465

Query: 365 LLSNMYAEAGKWDEASKVRELMKSR 389
            L +MYA+ GK D A KV + M  R
Sbjct: 466 ALIDMYAKCGKIDTARKVFDRMHKR 490



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A   F+ +  ++ VS+ A+++ + QN    + L++  EM +    P   T
Sbjct: 369 MYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKAT 428

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +VLPACA    L  G   H   I  G   D  + NAL DMYAKCG ++ A+ VF+ + 
Sbjct: 429 LASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMH 488

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS+N +I+ Y       E+L LF  M+  G+K D V+F+  ISAC++   + +GK 
Sbjct: 489 KRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKY 548

Query: 180 -IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
             + +T    +   +     ++D  +R+G     +   + +P++ D   W  L+
Sbjct: 549 WFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALL 602



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 138/286 (48%), Gaps = 14/286 (4%)

Query: 62  TNVLPACARGHFLRPGKEIHARIIR--------KGLNFDLFLTNALTDMYAKCGCLNLAQ 113
           T +L +C +   L  GK IH  +++           NFD+     L D+Y  C  L +A+
Sbjct: 13  TVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPF-EKLVDLYIACSELKIAR 71

Query: 114 NVFNI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170
           +VF+      ++ V +N+LI  Y+      E++ L+ +M   G+  +  +F   + AC+ 
Sbjct: 72  HVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSA 131

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           L    +G+EIH    R  L ++++V+ +++DFY + G +D A ++FD +  +D  +WN++
Sbjct: 132 LKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSM 191

Query: 231 ILGYGM-LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS 289
           I G+ +  G  D    L   M+ D V  +  + + +L A +    +  GK+         
Sbjct: 192 ISGFSLHEGSYDEVARLLVQMQND-VSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRG 250

Query: 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                +    ++D+ G+   ++ A ++   + +  +   W A++GA
Sbjct: 251 FVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  296 bits (759), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 156/447 (34%), Positives = 254/447 (56%), Gaps = 33/447 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           ++ K     EA  LF+ + +K++VSW+A+++ + QN +  +AL L +EM  +    + V 
Sbjct: 232 LFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVV 291

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
           + +VL AC+R   +  GK +H  +++ G+   + L NAL  MY+ C  +  AQ +F+   
Sbjct: 292 VLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESC 351

Query: 118 ----ISF-------------------------RDEVSYNILIVGYSQTSDCSESLSLFSE 148
               IS+                         +D VS++ +I GY+Q    +E+L LF E
Sbjct: 352 CLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQE 411

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M++ G K D    +  ISAC +LAA+ QGK IH    +  L  ++ +  ++++ Y + G 
Sbjct: 412 MQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGC 471

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           ++ A ++F  L  K  ++WN LILG  M G VD ++  F  M+E GV  + ++++A+L A
Sbjct: 472 VEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGA 531

Query: 269 CSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           C H GLV++G ++F+ M Q   + P   HY CMVDLLGRAG++++A +LI+++P+ PD +
Sbjct: 532 CRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVS 591

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
            WGALLGAC+ YG+ E G      L  L P H G+ +LLSN+YA  G W +  +VR +M+
Sbjct: 592 TWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMR 651

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVNDR 414
                K PGCS ++    V +F+  D+
Sbjct: 652 QHGVVKTPGCSMIEAHGRVHEFLAGDK 678



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 169/375 (45%), Gaps = 72/375 (19%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA     ++A  +F   +  ++VSWN+M+A +                         V 
Sbjct: 170 MYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGY-------------------------VL 204

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + NV  A          K+++ R+  +    ++  +N++  ++ K G +  A  +FN + 
Sbjct: 205 VGNVEEA----------KDVYDRMPER----NVIASNSMIVLFGKKGNVEEACKLFNEMK 250

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS++ LI  Y Q     E+L LF EM   G+  D V  +  +SAC+ L  +  GK 
Sbjct: 251 QKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKL 310

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+ ++  + T++ + N+++  Y+    +  A K+F      D  SWN++I GY   GE
Sbjct: 311 VHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGE 370

Query: 240 VDTA-------------------------------INLFEAMREDGVGYDPVSYIAILTA 268
           ++ A                               + LF+ M+ +G   D    +++++A
Sbjct: 371 IEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISA 430

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           C+H   +++GK     ++ + +K   +    ++++  + G +EDA+++ K L  E   + 
Sbjct: 431 CTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLE-EKGVST 489

Query: 329 WGALLGACRIYGNVE 343
           W AL+    + G V+
Sbjct: 490 WNALILGLAMNGLVD 504



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 128/269 (47%), Gaps = 14/269 (5%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN--VFN-ISFRDEVSYNILI 130
           ++   +I +++I  G   D F  + L     +   +N+ Q+  +F+ I   +    N ++
Sbjct: 39  IKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGFICNTMM 98

Query: 131 VGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH 190
            GY Q +   +++ ++  M    +  D  ++     +C+   A   GK I    ++    
Sbjct: 99  KGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFD 158

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
           + +++ N++++ Y   G +  A K+FD   V D  SWN+++ GY ++G V+ A ++++ M
Sbjct: 159 SDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRM 218

Query: 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
            E  V    ++  +++      G VE+  K F+EM+   +    + ++ ++    +  + 
Sbjct: 219 PERNV----IASNSMIVLFGKKGNVEEACKLFNEMKQKDL----VSWSALISCYEQNEMY 270

Query: 311 EDAVKLIKNL---PVEPDANIWGALLGAC 336
           E+A+ L K +    +  D  +  ++L AC
Sbjct: 271 EEALILFKEMNANGIMVDEVVVLSVLSAC 299


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/417 (37%), Positives = 245/417 (58%), Gaps = 8/417 (1%)

Query: 2   YAKSSRPAEASYLFHNIA-EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y+K +   +A  LF  I    N+VSW AM++ F QN  + +A+ L  EM      PN  T
Sbjct: 340 YSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFT 399

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            + +L A      + P  E+HA++++        +  AL D Y K G +  A  VF+ I 
Sbjct: 400 YSVILTALP---VISPS-EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGID 455

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL-AAIKQGK 178
            +D V+++ ++ GY+QT +   ++ +F E+   G+K +  +F   ++ CA   A++ QGK
Sbjct: 456 DKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGK 515

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           + HG  I+  L + L V++++L  Y + G I+ A ++F     KD  SWN++I GY   G
Sbjct: 516 QFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHG 575

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
           +   A+++F+ M++  V  D V++I +  AC+H GLVE+G+KYFD M  D  + PT+ H 
Sbjct: 576 QAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHN 635

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +CMVDL  RAG +E A+K+I+N+P    + IW  +L ACR++   ELG  AAE +  +KP
Sbjct: 636 SCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKP 695

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +    Y+LLSNMYAE+G W E +KVR+LM  R  KK PG SW++ +++   F+  DR
Sbjct: 696 EDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDR 752



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 168/344 (48%), Gaps = 8/344 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     +A  LF     K++V+WN+M++ +A N L+L+AL +   M ++    +  +
Sbjct: 238 LYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESS 297

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-- 118
             +V+  CA    LR  +++H  +++ G  FD  +  AL   Y+KC  +  A  +F    
Sbjct: 298 FASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIG 357

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              + VS+  +I G+ Q     E++ LFSEM+  G++ +  ++   ++A   ++      
Sbjct: 358 CVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP----S 413

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+H   ++ +      V  ++LD Y + G+++ A K+F  +  KD  +W+ ++ GY   G
Sbjct: 414 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 473

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTAC-SHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           E + AI +F  + + G+  +  ++ +IL  C +    + +GK++        +  +    
Sbjct: 474 ETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVS 533

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           + ++ +  + G +E A ++ K    E D   W +++     +G 
Sbjct: 534 SALLTMYAKKGNIESAEEVFKR-QREKDLVSWNSMISGYAQHGQ 576



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 103/435 (23%), Positives = 191/435 (43%), Gaps = 58/435 (13%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K S   +   +F  + E+N+V+W  +++ +A+N +  + L L   M      PNS T 
Sbjct: 138 YMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTF 197

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
              L   A       G ++H  +++ GL+  + ++N+L ++Y KCG +  A+ +F+    
Sbjct: 198 AAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEV 257

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  V++N +I GY+      E+L +F  MRL  ++    SF   I  CANL  ++  +++
Sbjct: 258 KSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQL 317

Query: 181 H------GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLILG 233
           H      G    +++ T L VA      Y++   +  A ++F  +  V +  SW  +I G
Sbjct: 318 HCSVVKYGFLFDQNIRTALMVA------YSKCTAMLDALRLFKEIGCVGNVVSWTAMISG 371

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-------HG-------------- 272
           +      + A++LF  M+  GV  +  +Y  ILTA         H               
Sbjct: 372 FLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVG 431

Query: 273 ----------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP- 321
                     G VE+  K F  +    +    + ++ M+    + G  E A+K+   L  
Sbjct: 432 TALLDAYVKLGKVEEAAKVFSGIDDKDI----VAWSAMLAGYAQTGETEAAIKMFGELTK 487

Query: 322 --VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ----HCGYYILLSNMYAEAGK 375
             ++P+   + ++L  C    N  +G     H F +K +     C    LL+ MYA+ G 
Sbjct: 488 GGIKPNEFTFSSILNVCAA-TNASMGQGKQFHGFAIKSRLDSSLCVSSALLT-MYAKKGN 545

Query: 376 WDEASKVRELMKSRE 390
            + A +V +  + ++
Sbjct: 546 IESAEEVFKRQREKD 560



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 160/338 (47%), Gaps = 17/338 (5%)

Query: 5   SSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN---EFPNSVTL 61
           SSR   A  LF     ++  S+ +++  F+++    +A +L   + IH    E   S+  
Sbjct: 40  SSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLF--LNIHRLGMEMDCSI-F 96

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           ++VL   A       G+++H + I+ G   D+ +  +L D Y K       + VF+ +  
Sbjct: 97  SSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKE 156

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ V++  LI GY++ S   E L+LF  M+  G + +  +F  A+   A      +G ++
Sbjct: 157 RNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQV 216

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H V ++  L   + V+NS+++ Y + G +  A  +FD   VK   +WN++I GY   G  
Sbjct: 217 HTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLD 276

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK-----PTEM 295
             A+ +F +MR + V     S+ +++  C++     K  ++ +++    VK        +
Sbjct: 277 LEALGMFYSMRLNYVRLSESSFASVIKLCAN----LKELRFTEQLHCSVVKYGFLFDQNI 332

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
             A MV    +   M DA++L K +    +   W A++
Sbjct: 333 RTALMV-AYSKCTAMLDALRLFKEIGCVGNVVSWTAMI 369



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 1/116 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F    EK++VSWN+M++ +AQ+   +KAL + +EM       + VT
Sbjct: 539 MYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVT 598

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNA-LTDMYAKCGCLNLAQNV 115
              V  AC     +  G++    ++R          N+ + D+Y++ G L  A  V
Sbjct: 599 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKV 654


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 148/413 (35%), Positives = 255/413 (61%), Gaps = 4/413 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     EA ++F  +A +++V+WN++++   Q      A++L   M      P+ +T
Sbjct: 212 VYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLT 271

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           L ++  A A+       K +H  + R+G +  D+   NA+ DMYAK   ++ AQ VF N+
Sbjct: 272 LVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNL 331

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMR-LLGMKHDVVSFMGAISACANLAAIKQG 177
             RD VS+N LI GY Q    +E++ ++++M    G+K    +F+  + A + L  ++QG
Sbjct: 332 PDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQG 391

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
             +H ++I+  L+  ++V   ++D Y + G++  A  +F+ +P + +  WN +I G G+ 
Sbjct: 392 MRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVH 451

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G    A++LF  M+++ +  D V+++++L ACSH GLV++G+ +FD MQ    + P   H
Sbjct: 452 GHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKH 511

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y CMVD+LGRAG +++A + I+++P++PD+ +WGALLGACRI+GNVE+G  A+++LF L 
Sbjct: 512 YTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELD 571

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
           P++ GYY+L+SNMYA+ GKWD    VR L++ +  +K PG S ++ +  V  F
Sbjct: 572 PENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVF 624



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 201/398 (50%), Gaps = 19/398 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +  R AEA  +F  + E+++ +WNAM++   +N     A+ L+  M       ++VTL
Sbjct: 112 YLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTL 171

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
           ++VLP C           +H   ++ GL+ +LF+ NAL D+Y K G L  A  VF  ++ 
Sbjct: 172 SSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMAL 231

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD V++N +I    Q    + ++ LF  M   G+  DV++ +   SA A        K +
Sbjct: 232 RDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSV 291

Query: 181 HGVTIRKHLHTHLFVA-NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           H    R+       +A N+++D Y +  +ID A K+FD LP +D  SWNTLI GY   G 
Sbjct: 292 HCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGL 351

Query: 240 VDTAINLFEAMREDGVGYDPV--SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
            + AI ++  M  +  G  P+  +++++L A S+ G +++G +    M A S+K T ++ 
Sbjct: 352 ANEAIRIYNDM-HNHEGLKPIQGTFVSVLPAYSYLGGLQQGMR----MHALSIK-TGLNL 405

Query: 298 -----ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN--VELGAWAAE 350
                 C++DL  + G + +A+ L +++P       W A++    ++G+    L  ++  
Sbjct: 406 DVYVTTCLIDLYAKCGKLVEAMFLFEHMP-RRSTGPWNAIIAGLGVHGHGAKALSLFSQM 464

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
               +KP H  +  LL+   + AG  D+     +LM++
Sbjct: 465 QQEEIKPDHVTFVSLLAAC-SHAGLVDQGRSFFDLMQT 501



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 125/267 (46%), Gaps = 22/267 (8%)

Query: 79  EIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           ++HA  +R GL + ++F + +L   Y + G +  A  VF+ +  RD  ++N ++ G  + 
Sbjct: 87  QLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRN 146

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
           +  +++++L   M   G+  D V+    +  C  L        +H   ++  L   LFV 
Sbjct: 147 TRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVC 206

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N+++D Y + G +  A+ +F  + ++D  +WN++I      G+V  A+ LF  M E GV 
Sbjct: 207 NALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVC 266

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA----------CMVDLLGR 306
            D ++ +++ +A +  G         DE+ A SV                   MVD+  +
Sbjct: 267 PDVLTLVSLASAVAQCG---------DELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAK 317

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALL 333
              ++ A K+  NLP + D   W  L+
Sbjct: 318 MSKIDAAQKVFDNLP-DRDVVSWNTLI 343


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 159/425 (37%), Positives = 261/425 (61%), Gaps = 9/425 (2%)

Query: 2   YAKSSRPAEASYLFHNIAE-KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y+K+    EA  +FH ++E ++ VSWN+MV  + Q+R   KAL+L  EM +     +  T
Sbjct: 183 YSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFT 242

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG-CLNLAQNVFN-I 118
           L +VL A      L  G + HA++I+ G + +  + + L D+Y+KCG C+   + VF+ I
Sbjct: 243 LASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEI 302

Query: 119 SFRDEVSYNILIVGYSQTSDCS-ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           S  D V +N +I GYS   D S E+L  F +++++G + D  S +  ISAC+N+++  QG
Sbjct: 303 SNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQG 362

Query: 178 KEIHGVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           +++HG+ ++  + ++ + V N+++  Y++ G +  A  +FD +P  ++ S+N++I GY  
Sbjct: 363 RQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQ 422

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEM 295
            G    +++LF+ M E G     +++I++L AC+H G VE GK YF+ M Q   ++P   
Sbjct: 423 HGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAG 482

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           H++CM+DLLGRAG + +A +LI+ +P +P    W ALLGACRI+GNVEL   AA  L  L
Sbjct: 483 HFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQL 542

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
            P +   Y++L+N+Y++ G+  +A+ VR+LM+ R  KK PGCSW++    +  FV  D  
Sbjct: 543 DPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAED-- 600

Query: 416 KTFTP 420
            TF P
Sbjct: 601 -TFHP 604



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 198/463 (42%), Gaps = 88/463 (19%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K  R + A  +F +  + N+ S+N +++ +A+      A QL  EMP     P+SV+
Sbjct: 52  LYSKCRRLSAARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQ----PDSVS 107

Query: 61  LTNVLPACARGHFLRPG---------------------------------KEIHARIIRK 87
              ++ A AR    +P                                  +++HA  +  
Sbjct: 108 YNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVT 167

Query: 88  GLNFDLFLTNALTDMYAKCGCLNLAQNVFN--ISFRDEVSYNILIVGYSQTSDCSESLSL 145
           GL+  + + NAL   Y+K G L  A+ +F+     RDEVS+N ++V Y Q  + S++L L
Sbjct: 168 GLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALEL 227

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           + EM + G+  D+ +    ++A  N+  +  G + H   I+   H +  V + ++D Y++
Sbjct: 228 YLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSK 287

Query: 206 SGRIDL-ANKIFDCLPVKDSASWNTLILGYGMLGEV-DTAINLFEAMREDGVGYDPVSYI 263
            G   L   K+FD +   D   WNT+I GY +  ++ D A+  F  ++  G   D  S +
Sbjct: 288 CGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLV 347

Query: 264 AILTACS-----------HG-------------------------GLVEKGKKYFDEMQA 287
            +++ACS           HG                         G +   K  FD M  
Sbjct: 348 CVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPE 407

Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN---LPVEPDANIWGALLGACRIYGNVEL 344
            +     + Y  M+    + G+   ++ L +    +   P    + ++L AC   G VE 
Sbjct: 408 HNT----VSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVED 463

Query: 345 GAW---AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
           G       +  F ++P+  G++  + ++   AGK  EA ++ E
Sbjct: 464 GKIYFNMMKQKFGIEPE-AGHFSCMIDLLGRAGKLSEAERLIE 505



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 140/313 (44%), Gaps = 39/313 (12%)

Query: 65  LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN------- 117
           L  C     LR GK +HA  I+  +    +L+N    +Y+KC  L+ A+ VF+       
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNV 74

Query: 118 ISFR-------------------------DEVSYNILIVGYSQTSDCSESLSLFSEMRLL 152
            SF                          D VSYN LI  Y++  D   +  LF EMR  
Sbjct: 75  FSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREA 134

Query: 153 GMKHDVVSFMGAISACA-NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211
            +  D  +  G I+AC  N+  I+Q   +H +++   L +++ V N+++  Y+++G +  
Sbjct: 135 FLDMDGFTLSGIITACGINVGLIRQ---LHALSVVTGLDSYVSVGNALITSYSKNGFLKE 191

Query: 212 ANKIFDCLPV-KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
           A +IF  L   +D  SWN++++ Y    E   A+ L+  M   G+  D  +  ++LTA +
Sbjct: 192 ARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFT 251

Query: 271 HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR-AGLMEDAVKLIKNLPVEPDANIW 329
           +   +  G ++  ++            + ++DL  +  G M D  K+   +   PD  +W
Sbjct: 252 NVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEIS-NPDLVLW 310

Query: 330 GALLGACRIYGNV 342
             ++    +Y ++
Sbjct: 311 NTMISGYSLYEDL 323



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 4/127 (3%)

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           +F   +  C     ++ GK +H + I+  + T  +++N  L  Y++  R+  A ++FD  
Sbjct: 10  NFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
              +  S+NTLI  Y     V+ A  LF+ M +     D VSY  ++ A +  G  +   
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQP----DSVSYNTLIAAYARRGDTQPAF 125

Query: 280 KYFDEMQ 286
           + F EM+
Sbjct: 126 QLFLEMR 132


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/415 (37%), Positives = 239/415 (57%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +     +A  LF  ++ +++ +WNAM+   AQ R   +AL L  +M      P++ T
Sbjct: 568 MYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATT 627

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             N+L A      L   KE+H+     GL  DL + NAL   Y+KCG +  A+ VF+ + 
Sbjct: 628 FINILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMV 686

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+  ++ ++I G +Q     ++ S F +M   G+  D  +++  +SACA+  A++  KE
Sbjct: 687 ERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKE 746

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +   L + L V N+++  Y + G ID A  +FD +  +D  SW  +I G    G 
Sbjct: 747 VHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGR 806

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++ F  M+ +G   +  SY+A+LTACSH GLV++G++ F  M  D  ++PT  HY 
Sbjct: 807 GLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYT 866

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAGL+E+A   I N+P+EPD   WGALLGAC  YGN+E+  +AA+    LKP+
Sbjct: 867 CMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPK 926

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               Y+LLSN+YA  GKW++   VR +M+ +  +K PG SW++  + +  FVV D
Sbjct: 927 SASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGD 981



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 167/341 (48%), Gaps = 3/341 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  + +++++SWNAM+   AQN    +A  +  +M      P+S T
Sbjct: 467 MYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTT 526

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L        L    E+H   +  GL  D  + +A   MY +CG ++ A+ +F+ +S
Sbjct: 527 YLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLS 586

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R   ++N +I G +Q     E+LSLF +M+  G   D  +F+  +SA  +  A++  KE
Sbjct: 587 VRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKE 646

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H       L   L V N+++  Y++ G +  A ++FD +  ++  +W  +I G    G 
Sbjct: 647 VHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGC 705

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A + F  M  +G+  D  +Y++IL+AC+  G +E  K+  +   +  +         
Sbjct: 706 GHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNA 765

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           +V +  + G ++DA  +  ++ VE D   W  ++G    +G
Sbjct: 766 LVHMYAKCGSIDDARSVFDDM-VERDVFSWTVMIGGLAQHG 805



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 168/342 (49%), Gaps = 12/342 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  + E+N++SW  M+   A      +A  L  +M      PNS T
Sbjct: 263 MYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYT 322

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L A A    L   KE+H+  +  GL  DL + NAL  MYAK G ++ A+ VF+ ++
Sbjct: 323 YVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMT 382

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI--SACANLAAIKQG 177
            RD  S+ ++I G +Q     E+ SLF +M+  G   ++ +++  +  SA A+ +A++  
Sbjct: 383 ERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWV 442

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K +H         + L + N+++  Y + G ID A  +FD +  +D  SWN ++ G    
Sbjct: 443 KVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQN 502

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH- 296
           G    A  +F  M+++G+  D  +Y+++L   +HG       ++ +E+   +V+   +  
Sbjct: 503 GCGHEAFTVFLQMQQEGLVPDSTTYLSLLN--THGS--TDALEWVNEVHKHAVETGLISD 558

Query: 297 ---YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
               +  + +  R G ++DA  L   L V      W A++G 
Sbjct: 559 FRVGSAFIHMYIRCGSIDDARLLFDKLSVR-HVTTWNAMIGG 599



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 171/341 (50%), Gaps = 10/341 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y +  R   A  +F  + +KNI  W  M+  +A+      A+++  +M      PN +T
Sbjct: 162 VYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEIT 221

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L AC     L+ GK+IHA II+ G   D+ +  AL +MY KCG +  AQ +F+ + 
Sbjct: 222 YLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMV 281

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ +S+ ++I G +      E+  LF +M+  G   +  +++  ++A A+  A++  KE
Sbjct: 282 ERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKE 341

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +   L   L V N+++  Y +SG ID A  +FD +  +D  SW  +I G    G 
Sbjct: 342 VHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGR 401

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL-----VEKGKKYFDEMQADSVKPTE 294
              A +LF  M+ +G   +  +Y++IL A +         V+   K+ +E  A  +    
Sbjct: 402 GQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEE--AGFISDLR 459

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +  A ++ +  + G ++DA +L+ +   + D   W A++G 
Sbjct: 460 IGNA-LIHMYAKCGSIDDA-RLVFDGMCDRDVISWNAMMGG 498



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 140/285 (49%), Gaps = 2/285 (0%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           +S +  N+L  C +   +   K++H  II+ G+  +L++ N L  +Y +CG L  A+ VF
Sbjct: 117 DSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVF 176

Query: 117 NISFRDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           +   +  +  +  +I GY++     +++ ++ +MR    + + ++++  + AC     +K
Sbjct: 177 DKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLK 236

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK+IH   I+    + + V  ++++ Y + G I+ A  IFD +  ++  SW  +I G  
Sbjct: 237 WGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLA 296

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G    A +LF  M+ +G   +  +Y++IL A +  G +E  K+         +     
Sbjct: 297 HYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLR 356

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
               +V +  ++G ++DA +++ +   E D   W  ++G    +G
Sbjct: 357 VGNALVHMYAKSGSIDDA-RVVFDGMTERDIFSWTVMIGGLAQHG 400



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 12/236 (5%)

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G+  D  S++  +  C     I   K++H   I+  +  +L+VAN +L  Y R GR+  A
Sbjct: 113 GIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCA 172

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
            ++FD L  K+   W T+I GY   G  + A+ +++ MR++    + ++Y++IL AC   
Sbjct: 173 RQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCP 232

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
             ++ GKK    +     +        +V++  + G +EDA +LI +  VE +   W  +
Sbjct: 233 VNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDA-QLIFDKMVERNVISWTVM 291

Query: 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGY------YILLSNMYAEAGKWDEASKV 382
           +G    YG  +     A HLF L+ Q  G+      Y+ + N  A AG  +   +V
Sbjct: 292 IGGLAHYGRGQ----EAFHLF-LQMQREGFIPNSYTYVSILNANASAGALEWVKEV 342


>gi|225435933|ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14170-like [Vitis vinifera]
          Length = 455

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 151/401 (37%), Positives = 245/401 (61%), Gaps = 2/401 (0%)

Query: 1   MYAKSSRPAEASY-LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MY++  + +  S  +F ++  +NI SWN ++  F+++ L  K++ L  +M   N+ P+  
Sbjct: 52  MYSQLGKLSPHSLSVFLHMPHRNIYSWNIIIGEFSRSHLPHKSIDLFLQMRHFNQPPDVF 111

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL  VL ACA    ++ G  +H   +  G+   LF+ +AL  MY   G +  A+ +F+ +
Sbjct: 112 TLPLVLRACAASGSVKLGVSVHGLCVEMGMEKSLFVASALVFMYVTFGKVLDARVLFDEM 171

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD V +  ++ GY+Q  +   +LS+F +M   G+  D V  +  + AC  L  +K GK
Sbjct: 172 PERDAVLWTAMLAGYAQHEEPMLALSVFRQMVSAGVALDGVVMISLLLACGQLGWLKHGK 231

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +HG   R+ L   L + N+++ FY +   +  +  +FD +P +D  SW+++ILGYG+ G
Sbjct: 232 SVHGWITRRCLALGLNLGNALVYFYVKCAALGYSYNLFDKMPERDVISWSSIILGYGLSG 291

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
            VD A++LF+ MR  GV  + V+++  L+AC+H G+VE+   YF+ M+   V P   HYA
Sbjct: 292 NVDIALDLFDRMRVAGVKPNDVTFLGALSACTHTGMVERAHTYFEMMKEYGVAPELKHYA 351

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD LGRAG++EDA + I+ +PVE D  + GALLG CR++GN E+G   A+ L  L+P+
Sbjct: 352 CMVDCLGRAGMLEDAERFIEEMPVEADGAVLGALLGGCRVHGNAEVGERVAKKLMGLEPE 411

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSW 399
               Y++L+N+YA AG++++A KVR+LMK R+  K PGCS+
Sbjct: 412 KASNYVMLANIYAGAGRFEDAEKVRQLMKQRKLSKVPGCSF 452



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 113/204 (55%), Gaps = 2/204 (0%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL-AQNVF-NISFRDEVSYNILIVGYSQ 135
           + +HAR++R  L  ++ L++ L  MY++ G L+  + +VF ++  R+  S+NI+I  +S+
Sbjct: 28  RHLHARLLRTSLYDNVILSSKLLLMYSQLGKLSPHSLSVFLHMPHRNIYSWNIIIGEFSR 87

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
           +    +S+ LF +MR      DV +    + ACA   ++K G  +HG+ +   +   LFV
Sbjct: 88  SHLPHKSIDLFLQMRHFNQPPDVFTLPLVLRACAASGSVKLGVSVHGLCVEMGMEKSLFV 147

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
           A++++  Y   G++  A  +FD +P +D+  W  ++ GY    E   A+++F  M   GV
Sbjct: 148 ASALVFMYVTFGKVLDARVLFDEMPERDAVLWTAMLAGYAQHEEPMLALSVFRQMVSAGV 207

Query: 256 GYDPVSYIAILTACSHGGLVEKGK 279
             D V  I++L AC   G ++ GK
Sbjct: 208 ALDGVVMISLLLACGQLGWLKHGK 231


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 150/417 (35%), Positives = 248/417 (59%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVAN-FAQNRLELKALQLVREMPIHNEFPNSV 59
           MYAK      A  LF+ + +K +VSW AM+A     NRLE +  +L   M   N FPN +
Sbjct: 241 MYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLE-EGTKLFIRMQEENIFPNEI 299

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T+ +++  C     L+ GK++HA I+R G +  L L  AL DMY KC  +  A+ +F+  
Sbjct: 300 TMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDST 359

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD + +  ++  Y+Q +   ++ +LF +MR  G++   V+ +  +S CA   A+  GK
Sbjct: 360 QNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGK 419

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H    ++ +     +  +++D Y + G I+ A ++F     +D   WN +I G+ M G
Sbjct: 420 WVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHG 479

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
             + A+++F  M   GV  + +++I +L ACSH GLV +GKK F++M     + P   HY
Sbjct: 480 YGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHY 539

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLLGRAGL+++A ++IK++P++P+  +WGAL+ ACR++ N +LG  AA  L  ++P
Sbjct: 540 GCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEP 599

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           ++CGY +L+SN+YA A +W +A+ VR+ MK+   KK PG S ++    V +F++ D+
Sbjct: 600 ENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQ 656



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 191/391 (48%), Gaps = 7/391 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY + +    A  +F  + E+++VSW+ M+ + ++N+    AL+L+REM      P+ V 
Sbjct: 138 MYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVA 197

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFL--TNALTDMYAKCGCLNLAQNVFN- 117
           + +++   A    +R GK +HA +IR   N  + +  T AL DMYAKCG L LA+ +FN 
Sbjct: 198 MVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNG 257

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           ++ +  VS+  +I G  +++   E   LF  M+   +  + ++ +  I  C    A++ G
Sbjct: 258 LTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLG 317

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K++H   +R      L +A +++D Y +   I  A  +FD    +D   W  ++  Y   
Sbjct: 318 KQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQA 377

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
             +D A NLF+ MR  GV    V+ +++L+ C+  G ++ GK     +  + V+   +  
Sbjct: 378 NCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILN 437

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG--ACRIYGNVELGAWAAEHLFML 355
             +VD+  + G +  A +L     +  D  +W A++   A   YG   L  +A      +
Sbjct: 438 TALVDMYAKCGDINAAGRLFIE-AISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGV 496

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
           KP    +  LL +  + AG   E  K+ E M
Sbjct: 497 KPNDITFIGLL-HACSHAGLVTEGKKLFEKM 526



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 168/361 (46%), Gaps = 44/361 (12%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           +VL AC +  + + GKEIH  +++KGL+ D+F+ NAL  MY +C C+  A+ VF+ +  R
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           D VS++ +I   S+  +   +L L  EM  + ++   V+ +  ++  A+ A ++ GK +H
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMH 218

Query: 182 GVTIRKHLHTHLFV--ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
              IR   + H+ V    ++LD Y + G + LA ++F+ L  K   SW  +I G      
Sbjct: 219 AYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNR 278

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           ++    LF  M+E+ +  + ++ ++++  C   G ++ GK+    +  +    +      
Sbjct: 279 LEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATA 338

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA------------------------ 335
           +VD+ G+   + +A  L  +     D  IW A+L A                        
Sbjct: 339 LVDMYGKCSDIRNARALFDSTQ-NRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRP 397

Query: 336 -----------CRIYGNVELGAWAAEHLFMLKPQ---HCGYYILLSNMYAEAGKWDEASK 381
                      C + G ++LG W   H ++ K +    C     L +MYA+ G  + A +
Sbjct: 398 TKVTIVSLLSLCAVAGALDLGKWV--HSYIDKERVEVDCILNTALVDMYAKCGDINAAGR 455

Query: 382 V 382
           +
Sbjct: 456 L 456


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 164/430 (38%), Positives = 250/430 (58%), Gaps = 15/430 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+++      A  +F    ++ I  WNA+    A        L+L   M +     +  T
Sbjct: 113 MFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFT 172

Query: 61  LTNVLPACARGH----FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
            T +L AC        FL+ GKEIHA I+R G    + +   L DMYA+ GC++ A  VF
Sbjct: 173 YTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVF 232

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV----SFMGAISACANL 171
           + +  ++ VS++ +I  Y++     E+L LF EM L    HD V    + +  + ACA  
Sbjct: 233 DEMPVKNVVSWSAMIACYAKNGKPYEALELFREMML--NTHDSVPNSVTMVSVLQACAAF 290

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
           AA++QGK IH   +R+ L + L V ++++  Y R G+++    IFD +  KD   WN+LI
Sbjct: 291 AALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLI 350

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSV 290
             YG+ G    AI +FE M + G     +S+I++L ACSH GLVE+GKK F+ M +   +
Sbjct: 351 SSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGI 410

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
           +P+  HYACMVDLLGRA  +++A K+I++L +EP   +WG+LLGACRI+ +VEL   A++
Sbjct: 411 QPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASK 470

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
            LF L+P + G Y+LL+++YAEA  WDE  +V++L+ SRE +K PG SW++ R ++  F 
Sbjct: 471 RLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFT 530

Query: 411 VNDRMKTFTP 420
             D    F P
Sbjct: 531 SVDE---FNP 537



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 166/350 (47%), Gaps = 23/350 (6%)

Query: 52  HNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL 111
           H   P   T   ++ + AR + L    ++H  ++  G + D FL   L +M+++   ++ 
Sbjct: 63  HESNPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDN 122

Query: 112 AQNVFNISFRDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170
           A+ VF+ + +  +  +N L    +     ++ L L+  M ++G+  D  ++   + AC  
Sbjct: 123 ARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVA 182

Query: 171 ----LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
               ++ +++GKEIH   +R     H+ V  +++D Y R G +  A+ +FD +PVK+  S
Sbjct: 183 SECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVS 242

Query: 227 WNTLILGYGMLGEVDTAINLFEAM---REDGVGYDPVSYIAILTACSHGGLVEKGK---K 280
           W+ +I  Y   G+   A+ LF  M     D V  + V+ +++L AC+    +E+GK    
Sbjct: 243 WSAMIACYAKNGKPYEALELFREMMLNTHDSVP-NSVTMVSVLQACAAFAALEQGKLIHA 301

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           Y      DS+ P     + ++ +  R G +E   +LI +   + D  +W +L+ +  ++G
Sbjct: 302 YILRRGLDSILPV---ISALITMYARCGKLESG-QLIFDRMHKKDVVLWNSLISSYGLHG 357

Query: 341 ----NVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
                +++     +H F   P H  +  +L    +  G  +E  K+ E M
Sbjct: 358 YGRKAIKIFEEMIDHGF--SPSHISFISVLGAC-SHTGLVEEGKKLFESM 404


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 158/415 (38%), Positives = 249/415 (60%), Gaps = 8/415 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K +   EA  LF  + E+N+VSW  M++ ++ N+L  KAL+ +  M      PN  T
Sbjct: 99  MYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFT 157

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++VL AC     LR   ++H  II+ GL  D+F+ +AL D+Y+K   L+ A  VF+ + 
Sbjct: 158 YSSVLRACDGLPNLR---QLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMP 214

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V +N +I G++Q SD +E+L+LF  M+  G   D  +    + AC  LA ++ G++
Sbjct: 215 TRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQ 274

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++      L + N+++D Y + G ++ AN  F  +  KD  SW+T++ G    G 
Sbjct: 275 VHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGY 332

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYA 298
              A+ LFE+M+E G   + ++ + +L ACSH GLVEKG  YF  M+    V P   HY 
Sbjct: 333 SRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYG 392

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C++DLLGRAG +++AVKLI  +  EPD+  W  LLGACR++ NV+L  +AA+ +  L+P+
Sbjct: 393 CLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPE 452

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             G YILLSN+YA   +W++ ++VR+ M +R  +K PGCSW++   ++  F++ D
Sbjct: 453 DAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGD 507



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 186/388 (47%), Gaps = 41/388 (10%)

Query: 31  ANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLN 90
           ANF       +A++ +  M  H  F +++T + ++  C+    ++ GK +H  I  KG  
Sbjct: 28  ANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYE 87

Query: 91  FDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
             +F+ N L +MY K   L  A+++F+ +  R+ VS+  +I  YS   +  ++L     M
Sbjct: 88  PKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLN-DKALKCLILM 146

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
              G++ ++ ++   + AC  L  ++Q   +H   I+  L + +FV ++++D Y++   +
Sbjct: 147 FREGVRPNMFTYSSVLRACDGLPNLRQ---LHCGIIKTGLESDVFVRSALIDVYSKWSDL 203

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           D A  +FD +P +D   WN++I G+    + + A+NLF+ M+  G   D  +  ++L AC
Sbjct: 204 DNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRAC 263

Query: 270 SHGGLVEKGKKY------FDE------------------MQADS-----VKPTEMHYACM 300
           +   L+E G++       FD+                    A+S     V+   + ++ M
Sbjct: 264 TGLALLELGRQVHVHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTM 323

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG---ACRIYGNVELGAW---AAEHLFM 354
           V  L + G    A++L +++        +  +LG   AC   G VE G +   + + LF 
Sbjct: 324 VAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFG 383

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKV 382
           + P    +Y  L ++   AG+ DEA K+
Sbjct: 384 VDPGR-EHYGCLIDLLGRAGRLDEAVKL 410


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 141/415 (33%), Positives = 253/415 (60%), Gaps = 1/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            Y+KS  P ++   F +  +K+  +W+++++ FAQN L   +L+ +R+M   +  P+   
Sbjct: 59  FYSKSQLPFDSRRAFEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHV 118

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +   +C        GK +H   ++ G + D+F+ ++L DMYAKCG +  A+ +F+ + 
Sbjct: 119 LPSATKSCGILSRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMP 178

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ V+++ ++ GY+Q  +  E+L LF E     +  +  SF   IS CAN   ++ G++
Sbjct: 179 LRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQ 238

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I G+ I+    +  FV +S++  Y++ G ++ A ++FD +P+++   WN ++        
Sbjct: 239 IQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSH 298

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
               I LF+ M+  G+  + ++++ +L ACSH GLV++GK YFD M+   ++PT+ HYA 
Sbjct: 299 TQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGKYYFDLMKESRIEPTDKHYAS 358

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VD+LGRAG +E+A++++ N+P++P  ++WGALL +C I+ N EL A+AA+ +F L P  
Sbjct: 359 LVDMLGRAGKLEEALEIVTNMPIDPTESVWGALLTSCTIHKNTELAAFAADKVFELGPVS 418

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            G +I LSN YA  G++++A+K R+L++ R  KK  G SWV+ R++V  F   +R
Sbjct: 419 SGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGER 473



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 167/350 (47%), Gaps = 11/350 (3%)

Query: 49  MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
           +P HN       + ++L + AR   +  G ++H  I++ GL+    + N L + Y+K   
Sbjct: 10  VPCHN----YNQICDLLLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQL 65

Query: 109 LNLAQNVFNIS-FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
              ++  F  S  +   +++ +I  ++Q      SL    +M    ++ D      A  +
Sbjct: 66  PFDSRRAFEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKS 125

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C  L+    GK +H ++++      +FV +S++D Y + G I  A K+FD +P+++  +W
Sbjct: 126 CGILSRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTW 185

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           + ++ GY  +GE + A+ LF+    + +  +  S+  +++ C++  L+E G++       
Sbjct: 186 SGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIK 245

Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE--LG 345
            S   +    + +V L  + G +E A ++   +P+  +  IW A+L AC  + + +  + 
Sbjct: 246 SSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMR-NLGIWNAMLKACAQHSHTQKVIE 304

Query: 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395
            +    L  +KP    +  +L N  + AG  DE     +LMK  E++  P
Sbjct: 305 LFKRMKLSGMKPNFITFLNVL-NACSHAGLVDEGKYYFDLMK--ESRIEP 351


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 147/417 (35%), Positives = 243/417 (58%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            Y K     +A ++F  + E+N+VSW AM++ ++Q     +AL L  +M      PN  T
Sbjct: 102 FYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFT 161

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL +C        G++IH+ II+      +++ ++L DMYAK G ++ A+ +F  + 
Sbjct: 162 FATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLP 221

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS   +I GY+Q     E+L LF  ++  GM+ + V++   ++A + LAA+  GK+
Sbjct: 222 ERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQ 281

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +R  + +++ + NS++D Y++ G +  A +IFD L  +   SWN +++GY   GE
Sbjct: 282 VHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGE 341

Query: 240 VDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPTEMH 296
               + LF  M  E+ V  D V+ +A+L+ CSHGGL +KG   F +M +   SV+P   H
Sbjct: 342 GREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKH 401

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y C+VD+LGRAG +E A + +K +P EP A IWG LLGAC ++ N+++G +    L  ++
Sbjct: 402 YGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIE 461

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P++ G Y++LSN+YA AG+W++   +R LM  +   K PG SW++    +  F  +D
Sbjct: 462 PENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASD 518



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 140/272 (51%), Gaps = 2/272 (0%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFR 121
            VL  C R   +R G+ +HA +I+      ++L   L   Y KC  L  A++VF++   R
Sbjct: 63  TVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPER 122

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + VS+  +I  YSQ    S++LSLF +M   G + +  +F   +++C   +    G++IH
Sbjct: 123 NVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIH 182

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
              I+ +   H++V +S+LD Y + G+I  A  IF CLP +D  S   +I GY  LG  +
Sbjct: 183 SHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDE 242

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            A+ LF  ++ +G+  + V+Y ++LTA S    ++ GK+  + +    V    +    ++
Sbjct: 243 EALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLI 302

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           D+  + G +  A ++   L  E     W A+L
Sbjct: 303 DMYSKCGNLTYARRIFDTLH-ERTVISWNAML 333



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/173 (20%), Positives = 78/173 (45%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M L G+  +   +   ++ C    AI++G+ +H   I+ H    +++   ++ FY +   
Sbjct: 49  MALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDS 108

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +  A  +FD +P ++  SW  +I  Y   G    A++LF  M   G   +  ++  +LT+
Sbjct: 109 LRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTS 168

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
           C        G++    +   + +      + ++D+  + G + +A  + + LP
Sbjct: 169 CIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLP 221


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 148/409 (36%), Positives = 240/409 (58%), Gaps = 2/409 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F  I+  ++ +WN +++ + Q  L    ++L R M   N  P+  TL  +L +C+R
Sbjct: 369 ARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSR 428

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              L  G ++H+  +R  L+ D+F+ + L DMY+KCG + +A+ +FN ++ RD V +N +
Sbjct: 429 LGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSM 488

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I G +  S   E+   F +MR  GM     S+   I++CA L+++ QG++IH   ++   
Sbjct: 489 ISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGY 548

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             +++V ++++D Y + G +D A   FDC+  K+  +WN +I GY   G  + A++LFE 
Sbjct: 549 DQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEY 608

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAG 308
           M       D V++IA+LT CSH GLV++   +F+ M++   + P   HY C++D LGRAG
Sbjct: 609 MLTTEQRPDGVTFIAVLTGCSHSGLVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAG 668

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
            + +   LI N+P + D  +W  LL AC ++ N ELG  AA+HLF L P++   Y+LLSN
Sbjct: 669 RLVEVEALIDNMPCKDDPIVWEVLLAACAVHHNAELGECAAKHLFRLDPKNPSPYVLLSN 728

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKT 417
           +YA  G+  +AS VR LM SR   K  G SW+  +D V  F+V D ++T
Sbjct: 729 IYASLGRHGDASGVRALMSSRGVVKGRGYSWIDHKDGVHAFMVADDLQT 777



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 195/396 (49%), Gaps = 23/396 (5%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  L   + ++N+VSWN ++A  A++    +AL+L   M      P   TL +VL AC  
Sbjct: 93  ARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGA 152

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              L  G+  H   ++ GL+ +LF+ NAL  MY KCG +  A  +F+ ++  +EVS+  +
Sbjct: 153 VAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAM 212

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN--------LAAIKQGKEIH 181
           + G  Q     ++L LF+ M   G++ D V+    + +CA         + A + G+ IH
Sbjct: 213 MGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIH 272

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
            + +RK   +   V NS++D YT+  ++D A K+FD LP   + SWN LI G+G  G   
Sbjct: 273 ALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYA 332

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            A+ +   M E G   + V+Y  +L +C     V   +  FD++     +P+   +  ++
Sbjct: 333 KALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKIS----RPSVTTWNTLL 388

Query: 302 DLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGAW--AAEHLFMLK 356
               +  L +D V+L + +    V+PD      +L +C   G ++LG    +A   F+L 
Sbjct: 389 SGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLL- 447

Query: 357 PQHCGYYIL--LSNMYAEAGKWDEASKVRELMKSRE 390
             H   ++   L +MY++ G+   A  +   M  R+
Sbjct: 448 --HNDMFVASGLVDMYSKCGQIGIARIIFNRMTERD 481



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 128/240 (53%), Gaps = 15/240 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  +   A  +F+ + E+++V WN+M++  A + L  +A    ++M  +   P   +
Sbjct: 460 MYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESS 519

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +++ +CAR   +  G++IHA+I++ G + ++++ +AL DMYAKCG ++ A+  F+ + 
Sbjct: 520 YASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMV 579

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
            ++ V++N +I GY+Q     +++ LF  M     + D V+F+  ++ C++   + +   
Sbjct: 580 TKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDEAIA 639

Query: 178 -----KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA-SWNTLI 231
                +  +G+T     +T L      +D   R+GR+     + D +P KD    W  L+
Sbjct: 640 FFNSMESTYGITPLAEHYTCL------IDGLGRAGRLVEVEALIDNMPCKDDPIVWEVLL 693



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 129/283 (45%), Gaps = 50/283 (17%)

Query: 84  IIRKGLNFDLFLTNALTDMYA-------------------------------KCGCLNLA 112
           ++  GL  D FL N L ++Y+                               + G L+ A
Sbjct: 34  VLAAGLGADTFLINRLVELYSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAA 93

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
           + + + +  R+ VS+N +I   +++    E+L L+  M   G+     +    +SAC  +
Sbjct: 94  RALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAV 153

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
           AA+  G+  HG+ ++  L  +LFV N++L  YT+ G ++ A ++FD +   +  S+  ++
Sbjct: 154 AALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMM 213

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
            G    G VD A+ LF  M   GV  DPV+  ++L +C+     E     FD ++A  + 
Sbjct: 214 GGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASE-----FDVVRAFRLG 268

Query: 292 P------------TEMHYA-CMVDLLGRAGLMEDAVKLIKNLP 321
                        ++ H    ++D+  +   M++AVK+  +LP
Sbjct: 269 QCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLP 311


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 148/413 (35%), Positives = 246/413 (59%), Gaps = 11/413 (2%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
            S +F    +K++VSW AM+  F +N   L+A+    EM       N +T+ +VL A  +
Sbjct: 157 GSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRK 216

Query: 71  GHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
              +R G+ IH   +  G +  D+F+ ++L DMY KCGC + AQ VF+ +  R+ V++  
Sbjct: 217 AEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTA 276

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVV----SFMGAISACANLAAIKQGKEIHGVT 184
           LI GY Q     + + +F EM    +K DV     +    +SACA++ A+ +G+ +H   
Sbjct: 277 LIAGYVQGRCFEKGMFVFEEM----LKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYV 332

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
           I+  +  +  V  +++DFY + G ++ A  +F+ L  K+  +W  +I G+   G    A+
Sbjct: 333 IKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAV 392

Query: 245 NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDL 303
           +LF  M    V  + V++I +L+AC+HGGLVE+G++ F  M+   +++P   HYACMVDL
Sbjct: 393 DLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDL 452

Query: 304 LGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY 363
            GR GL+E+A  LI+ +P+EP   +WGAL G+C I+ + ELG +AA  +  L+P H G Y
Sbjct: 453 FGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRY 512

Query: 364 ILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMK 416
            LL+N+Y+E+  WD+ ++VR+ MK ++  K+PGCSW++ + ++ +F+  D  K
Sbjct: 513 TLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIEVKGKLHEFIAFDDKK 565



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 117/234 (50%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  +  +N+V+W A++A + Q R   K + +  EM   +  PN  T
Sbjct: 249 MYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKT 308

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L++VL ACA    L  G+ +H  +I+  +  +  +   L D YAKCGCL  A  VF  + 
Sbjct: 309 LSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLR 368

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++  ++  +I G++       ++ LF  M    +  + V+F+  +SACA+   +++G+ 
Sbjct: 369 EKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRR 428

Query: 180 IH-GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS-ASWNTLI 231
           +   +  R +L         ++D + R G ++ A  + + +P++ + A W  L 
Sbjct: 429 LFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGALF 482



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 2/158 (1%)

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           + H   ++    + LFV NS++  Y+  G  +  +++FD    KD  SW  +I G+    
Sbjct: 124 QFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRND 183

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD-EMQADSVKPTEMHY 297
               A+  F  M+  GV  + ++ +++L A      V  G+      ++A  V+      
Sbjct: 184 SSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIG 243

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           + +VD+ G+ G  +DA K+   +P   +   W AL+  
Sbjct: 244 SSLVDMYGKCGCYDDAQKVFDEMPSR-NVVTWTALIAG 280


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 146/406 (35%), Positives = 251/406 (61%), Gaps = 6/406 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K   P EA  +F ++   ++VSW+ ++A ++QN L  ++ +L   M       N++ 
Sbjct: 277 MYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIV 336

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T+VLPA  +   L+ GKE+H  ++++GL  D+ + +AL  MYA CG +  A+++F   S
Sbjct: 337 ATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTS 396

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH--DVVSFMGAISACANLAAIKQG 177
            +D + +N +IVGY+   D   +   F+  R+ G +H  + ++ +  +  C  + A++QG
Sbjct: 397 DKDIMVWNSMIVGYNLVGDFESAF--FTFRRIWGAEHRPNFITVVSILPICTQMGALRQG 454

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           KEIHG   +  L  ++ V NS++D Y++ G ++L  K+F  + V++  ++NT+I   G  
Sbjct: 455 KEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSH 514

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G+ +  +  +E M+E+G   + V++I++L+ACSH GL+++G   ++ M  D  ++P   H
Sbjct: 515 GQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEH 574

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y+CMVDL+GRAG ++ A K I  +P+ PDAN++G+LLGACR++  VEL    AE +  LK
Sbjct: 575 YSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSLLGACRLHNKVELTELLAERILQLK 634

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQT 402
               G+Y+LLSN+YA   +W++ SKVR ++K +  +K PG SW+Q 
Sbjct: 635 ADDSGHYVLLSNLYASGKRWEDMSKVRSMIKDKGLEKKPGSSWIQV 680



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 163/344 (47%), Gaps = 9/344 (2%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL 74
           F  +  K I++WNA++          KA+     M  H   P++ T   VL AC+  H L
Sbjct: 90  FRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSLHAL 149

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGY 133
           + G+ +H  +  K    ++++  A+ DM+AKCG +  A+ +F  +  RD  S+  LI G 
Sbjct: 150 QLGRWVHETMHGK-TKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGT 208

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
               +C E+L LF +MR  G+  D V     + AC  L A+K G  +    +R    + L
Sbjct: 209 MWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGFESDL 268

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
           +V+N+++D Y + G    A+++F  +   D  SW+TLI GY        +  L+  M   
Sbjct: 269 YVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINV 328

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
           G+  + +   ++L A     L+++GK+  + +  + +    +  + ++ +    G +++A
Sbjct: 329 GLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEA 388

Query: 314 VKLIKNLPVEPDANIWGALLGACRIYGNVELG------AWAAEH 351
             + +    + D  +W +++    + G+ E         W AEH
Sbjct: 389 ESIFE-CTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEH 431



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 2/138 (1%)

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
           A+ +++ Y   G +  A   F  LP K   +WN ++ G   +G    AI+ + +M + GV
Sbjct: 70  ASQLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGV 129

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
             D  +Y  +L ACS    ++ G+   + M   +     +  A ++D+  + G +EDA +
Sbjct: 130 TPDNYTYPLVLKACSSLHALQLGRWVHETMHGKTKANVYVQCA-VIDMFAKCGSVEDARR 188

Query: 316 LIKNLPVEPDANIWGALL 333
           + + +P + D   W AL+
Sbjct: 189 MFEEMP-DRDLASWTALI 205


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 151/418 (36%), Positives = 246/418 (58%), Gaps = 5/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+KS   ++A  +F ++  +N VSWN+M+A F  N L+L+A +L   M +         
Sbjct: 237 MYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTI 296

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-- 118
              V+  CA    +   K++H ++I+ G +FDL +  AL   Y+KC  ++ A  +F +  
Sbjct: 297 FATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMH 356

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACAN-LAAIKQ 176
             ++ VS+  +I GY Q      +++LF +MR   G++ +  +F   ++ACA   A+++Q
Sbjct: 357 GVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQ 416

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK+ H  +I+      L V+++++  Y + G I+ AN++F     +D  SWN++I GY  
Sbjct: 417 GKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQ 476

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G    ++ +FE MR   +  D +++I +++AC+H GLV +G++YFD M  D  + PT  
Sbjct: 477 HGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTME 536

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY+CMVDL  RAG++E A+ LI  +P    A IW  LL ACR++ NV+LG  AAE L  L
Sbjct: 537 HYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISL 596

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +PQ    Y+LLSN+YA AG W E +KVR+LM  ++ KK  G SW++ +++   F+  D
Sbjct: 597 QPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGD 654



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 179/349 (51%), Gaps = 15/349 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+    +   +F  +  KN+VSW +++A + QN L  +AL+L  +M +    PN  T
Sbjct: 136 MYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFT 195

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL   A    +  G ++H  +I+ GL+  +F+ N++ +MY+K   ++ A+ VF+ + 
Sbjct: 196 FAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSME 255

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+N +I G+       E+  LF  MRL G+K     F   I  CAN+  +   K+
Sbjct: 256 NRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQ 315

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL--PVKDSASWNTLILGYGML 237
           +H   I+      L +  +++  Y++   ID A K+F C+   V++  SW  +I GY   
Sbjct: 316 LHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLF-CMMHGVQNVVSWTAIISGYVQN 374

Query: 238 GEVDTAINLFEAM-REDGVGYDPVSYIAILTACSH-GGLVEKGKKYFDEMQADSVKPTEM 295
           G  D A+NLF  M RE+GV  +  ++ ++L AC+     VE+GK++     + S+K    
Sbjct: 375 GRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQF----HSCSIKSGFS 430

Query: 296 HYAC----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           +  C    +V +  + G +E A ++ K   V+ D   W +++     +G
Sbjct: 431 NALCVSSALVTMYAKRGNIESANEVFKR-QVDRDLVSWNSMISGYAQHG 478



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 133/259 (51%), Gaps = 1/259 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           LF    ++ +   N ++  F++N    +AL L   +       +  +L+ VL  C     
Sbjct: 48  LFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFD 107

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
              GK++H + I+ G   D+ +  +L DMY K   +   + VF+ +  ++ VS+  L+ G
Sbjct: 108 RIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAG 167

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y Q     ++L LFS+M+L G+K +  +F   +   A   A+++G ++H + I+  L + 
Sbjct: 168 YRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDST 227

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +FV NS+++ Y++S  +  A  +FD +  +++ SWN++I G+   G    A  LF  MR 
Sbjct: 228 IFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRL 287

Query: 253 DGVGYDPVSYIAILTACSH 271
           +GV      +  ++  C++
Sbjct: 288 EGVKLTQTIFATVIKLCAN 306



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 109/225 (48%), Gaps = 2/225 (0%)

Query: 112 AQNVFNISFRDEVSYNI-LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170
           +Q +F+ + +  +S N  L+  +S+     E+L+LF  +R  G   D  S    +  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           L     GK++H   I+      + V  S++D Y ++  ++   ++FD + VK+  SW +L
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           + GY   G  + A+ LF  M+ +G+  +P ++ A+L   +  G VEKG +    +    +
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
             T      MV++  ++ ++ DA  +  ++    +A  W +++  
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAG 268


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 159/428 (37%), Positives = 250/428 (58%), Gaps = 11/428 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+       A  +F    ++ I  WNA+           + L L  +M       +  T
Sbjct: 121 MYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFT 180

Query: 61  LTNVLPACARG----HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
            T VL AC       + L  GKEIHA + R+G +  +++   L DMYA+ GC++ A  VF
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFMGAISACANLAA 173
             +  R+ VS++ +I  Y++     E+L  F EM         + V+ +  + ACA+LAA
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           ++QGK IHG  +R+ L + L V ++++  Y R G++++  ++FD +  +D  SWN+LI  
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKP 292
           YG+ G    AI +FE M  +G    PV+++++L ACSH GLVE+GK+ F+ M  D  +KP
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
              HYACMVDLLGRA  +++A K+++++  EP   +WG+LLG+CRI+GNVEL   A+  L
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRL 480

Query: 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVN 412
           F L+P++ G Y+LL+++YAEA  WDE  +V++L++ R  +K PG  W++ R ++  FV  
Sbjct: 481 FALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSV 540

Query: 413 DRMKTFTP 420
           D    F P
Sbjct: 541 DE---FNP 545



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 169/385 (43%), Gaps = 51/385 (13%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P+  T   ++  C     L     +H  I+  G + D FL   L  MY+  G ++ A+ V
Sbjct: 75  PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 116 FNISFRDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA----N 170
           F+ + +  +  +N L    +      E L L+ +M  +G++ D  ++   + AC      
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           +  + +GKEIH    R+   +H+++  +++D Y R G +D A+ +F  +PV++  SW+ +
Sbjct: 195 VNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAM 254

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGK---KYFDEM 285
           I  Y   G+   A+  F  M  +     P  V+ +++L AC+    +E+GK    Y    
Sbjct: 255 IACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRR 314

Query: 286 QADSVKPTEMHYACMVDLLGRAGLME-------------------------------DAV 314
             DS+ P     + +V + GR G +E                                A+
Sbjct: 315 GLDSILPV---ISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAI 371

Query: 315 KLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFM---LKPQHCGYYILLSN 368
           ++ + +      P    + ++LGAC   G VE G    E ++    +KPQ   +Y  + +
Sbjct: 372 QIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQ-IEHYACMVD 430

Query: 369 MYAEAGKWDEASKVRELMKSREAKK 393
           +   A + DEA+K+ + M++    K
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPK 455


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/440 (37%), Positives = 252/440 (57%), Gaps = 38/440 (8%)

Query: 12  SYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           +YL   + E   K+IVSWN+MV  F Q     KAL L   M      PN+VT+ +V+ AC
Sbjct: 294 AYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSAC 353

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSY- 126
           A+   L  G+++   I R  +  +L + NA  DM+ KCG + +A+ +F N+  RD VS+ 
Sbjct: 354 AKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWT 413

Query: 127 ------------------------------NILIVGYSQTSDCSESLSLFSEMRLL--GM 154
                                         N+LI GY Q+    E+L++F E++L   G 
Sbjct: 414 TIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGA 473

Query: 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANK 214
           + D V+ +  +SACA L A+  G+ IHG   ++ +  +  +A S++D Y++SG ++ A +
Sbjct: 474 RPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIE 533

Query: 215 IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL 274
           +F  +  KD   W+ +I G  M G  + AI LF  M+E  V  + V++  +L ACSH GL
Sbjct: 534 VFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGL 593

Query: 275 VEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           V++GK+ FDEM+    V P   HY+CMVD+LGRAG +E+A+K I+ +P+ P A++WGALL
Sbjct: 594 VDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALL 653

Query: 334 GACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKK 393
           GAC I+GN+EL   A   L  ++P + G Y+LLSN+YA+ G W+  S++R+ M+    KK
Sbjct: 654 GACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKK 713

Query: 394 NPGCSWVQTRDEVQDFVVND 413
             GCS ++    V +F+V D
Sbjct: 714 ETGCSSIEIDGTVHEFIVGD 733



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 196/420 (46%), Gaps = 49/420 (11%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACA 69
           A  +F  I + N+ SWN ++   A +   ++++ +   M   + F PN  T   ++ A A
Sbjct: 192 ARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVA 251

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI---SFRDEVSY 126
                  GK +H   I+     D+F+ N+L   YA CG L+LA  VF +   + +D VS+
Sbjct: 252 ERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSW 311

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           N ++ G+ Q     ++L LF  MR  G+  + V+ +  +SACA    +  G+++     R
Sbjct: 312 NSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDR 371

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
             +  +L V N+ +D + + G +++A  +FD +  +D  SW T+I GY  + E   A ++
Sbjct: 372 NEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDI 431

Query: 247 FEAM-RED--------------------------------GVGYDPVSYIAILTACSHGG 273
           F++M R+D                                G   D V+ ++ L+AC+  G
Sbjct: 432 FDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLG 491

Query: 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            ++ G+     ++ + ++        ++D+  ++G +E A+++  ++    D  +W A++
Sbjct: 492 AMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIG-NKDVFVWSAMI 550

Query: 334 GACRIYGNVELGAWAAEHLFM------LKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
               ++G  E    AA  LF+      +KP    +  LL    + +G  DE  ++ + M+
Sbjct: 551 AGLAMHGRGE----AAIELFLDMQETQVKPNSVTFTNLLCAC-SHSGLVDEGKRLFDEME 605



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 19/254 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE--FPNSV 59
           YAK S    A  +F ++  K+I +WN +++ + Q+    +AL + RE+ +      P+ V
Sbjct: 419 YAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQV 478

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           TL + L ACA+   +  G+ IH  I ++ +  +  L  +L DMY+K G +  A  VF +I
Sbjct: 479 TLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSI 538

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D   ++ +I G +       ++ LF +M+   +K + V+F   + AC++   + +GK
Sbjct: 539 GNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGK 598

Query: 179 -------EIHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNT 229
                   ++GV  + KH        + ++D   R+G ++ A K  + +P+  SAS W  
Sbjct: 599 RLFDEMERVYGVVPKTKHY-------SCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGA 651

Query: 230 LILGYGMLGEVDTA 243
           L+    + G ++ A
Sbjct: 652 LLGACCIHGNLELA 665



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+KS    +A  +FH+I  K++  W+AM+A  A +     A++L  +M      PNSVT
Sbjct: 521 MYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVT 580

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR 86
            TN+L AC+    +  GK +   + R
Sbjct: 581 FTNLLCACSHSGLVDEGKRLFDEMER 606


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 150/411 (36%), Positives = 248/411 (60%), Gaps = 2/411 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K    + A  +F  +  + +VSWN+M+  + Q+     A+ + ++M      P +VT
Sbjct: 175 MYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVT 234

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +   L ACA    L  GK +H  + +  L+ D+ + N+L  MY+KC  +++A ++F N+ 
Sbjct: 235 VMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLR 294

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N +I+GY+Q    +E+L+ F EM+   +K D  + +  I A A L+  +Q K 
Sbjct: 295 NKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKW 354

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG+ IR+ L  ++FV  +++D Y + G I  A K+FD +  +   +WN +I GYG  G 
Sbjct: 355 IHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGL 414

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
             T++ LF+ M++  +  + ++++  L+ACSH GLVE+G  +F+ M+ D  ++PT  HY 
Sbjct: 415 GKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYG 474

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            MVDLLGRAG +  A   I+ +P++P   ++GA+LGAC+I+ NV+LG  AA  +F L P 
Sbjct: 475 AMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPD 534

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
             GY++LL+N+YA A  W + +KVR +M+    +K PGCS V+  +EV  F
Sbjct: 535 DGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSF 585



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 153/313 (48%), Gaps = 5/313 (1%)

Query: 29  MVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKG 88
           M+  +A++     AL     M   +  P     T +L  C     L+ GKEIH  +I  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 89  LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
            +++LF    + +MYAKC  +N A N+F+ +  RD V +N +I GY+Q      +L L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
            M   G + D ++ +  + A A+   ++ G  +HG  +R    + + V+ +++D Y++ G
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
            + +A  IFD +  +   SWN++I GY   G+ + A+ +F+ M ++GV    V+ +  L 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 268 ACSHGGLVEKGK---KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP-VE 323
           AC+  G +E+GK   K  D+++ DS          M     R  +  D  K ++N   V 
Sbjct: 241 ACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVS 300

Query: 324 PDANIWGALLGAC 336
            +A I G     C
Sbjct: 301 WNAMILGYAQNGC 313


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 148/412 (35%), Positives = 243/412 (58%), Gaps = 2/412 (0%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           KS        +F  ++  ++ SWN +++ ++QN    +A++L REM   +  P+  TL  
Sbjct: 365 KSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAI 424

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L + A    L  G+++HA   +     D++L + L  MY+KCG + +A+ +F+ I+  D
Sbjct: 425 ILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELD 484

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            V +N ++ G S  S   E+ + F +MR  GM     S+   +S CA L+++ QG+++H 
Sbjct: 485 IVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHS 544

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
              R+      FV ++++D Y++ G +D A  +FD +  K++ +WN +I GY   G  D 
Sbjct: 545 QIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDE 604

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMV 301
           A+ L+E M   G   D ++++A+LTACSH GLV+ G K F+ MQ +  V+P   HY C++
Sbjct: 605 AVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCII 664

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361
           D LGRAG + +A  LI  +P + D  IW  LL +CR+Y +V L   AAE LF L PQ+  
Sbjct: 665 DSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSA 724

Query: 362 YYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            Y+LL+N+Y+  G+WD+A  VRELM   +  K+PG SW++ ++ +Q F+V+D
Sbjct: 725 PYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIEHKNGMQAFMVDD 776



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 195/405 (48%), Gaps = 33/405 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K+S   +A  LF  + E+NIVSWN +++   +N  E KAL +   M      P   TL
Sbjct: 81  YCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTL 140

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            +VL AC     +  G+  H   I+ GL+ ++++ NAL  MYAKC C+  A   F ++  
Sbjct: 141 ASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPE 200

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN---------- 170
            +EVS+  ++ G + +   +E+  LF  M    +  D VS    +  C+           
Sbjct: 201 PNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHD 260

Query: 171 ----LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
               L++   G+++H +TI+    + L + NS+LD Y ++G +D A  IF  +P     S
Sbjct: 261 SNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVS 320

Query: 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
           WN +I GYG   +   AI   + M+  G   D ++Y+ +L AC   G +E G++ FD M 
Sbjct: 321 WNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMS 380

Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPD----ANIWGALLGACRIY 339
           +    P+   +  ++    +    ++AVKL + +    V PD    A I  +L G   + 
Sbjct: 381 S----PSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLE 436

Query: 340 GNVELGAWAAEHLFMLKPQHCGYYIL--LSNMYAEAGKWDEASKV 382
           G  ++ A + + +F         Y+   L  MY++ GK + A ++
Sbjct: 437 GGRQVHAVSQKAVF-----RTDIYLASGLIGMYSKCGKVEMAKRI 476



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 159/333 (47%), Gaps = 35/333 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+     A  +F N+ E ++VSWN M+A + Q     KA++ ++ M  H   P+ +T
Sbjct: 296 MYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEIT 355

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             N+L AC +   +  G+++          FD   + +L+                    
Sbjct: 356 YVNMLVACIKSGDIEAGRQM----------FDGMSSPSLS-------------------- 385

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
               S+N ++ GYSQ  +  E++ LF EM+   +  D  +    +S+ A +  ++ G+++
Sbjct: 386 ----SWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQV 441

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H V+ +    T +++A+ ++  Y++ G++++A +IFD +   D   WN+++ G  +    
Sbjct: 442 HAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLD 501

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A   F+ MRE G+     SY  +L+ C+    + +G++   ++  +         + +
Sbjct: 502 KEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSAL 561

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +D+  + G + DA + + ++ +  +   W  ++
Sbjct: 562 IDMYSKCGDV-DAARWVFDMMLGKNTVTWNEMI 593



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 130/237 (54%), Gaps = 9/237 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  +   A  +F  IAE +IV WN+M+A  + N L+ +A    ++M     FP+  +
Sbjct: 463 MYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFS 522

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
              VL  CA+   L  G+++H++I R+G   D F+ +AL DMY+KCG ++ A+ VF++  
Sbjct: 523 YATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMML 582

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ V++N +I GY+Q     E++ L+ +M   G K D ++F+  ++AC++   +  G +
Sbjct: 583 GKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIK 642

Query: 180 IHGVTIRKH----LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
           I     ++H    L  H      I+D   R+GR+  A  + D +P K D   W  L+
Sbjct: 643 IFNSMQQEHGVEPLVDHY---TCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLL 696



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 150/338 (44%), Gaps = 50/338 (14%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L ++L  C        GK IHA ++R  L+ D FL+N L + YAKC  ++ ++ +F+ + 
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEM----------------------RLLGMKHD 157
            RD  ++N ++  Y + S+  ++  LF+EM                      + LG+ + 
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYR 127

Query: 158 V---------VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           +          +    +SAC  L  ++ G+  HG++I+  L  +++V N++L  Y +   
Sbjct: 128 MSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRC 187

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           I  A + F  +P  +  S+  ++ G     +V+ A  LF  M  + +  D VS  ++L  
Sbjct: 188 IGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGV 247

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYAC--------------MVDLLGRAGLMEDAV 314
           CS GG  E G    +++ +  V   ++H                 ++D+  + G M+ A 
Sbjct: 248 CSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAE 307

Query: 315 KLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
            +  N+P E     W  ++     YG     + A E+L
Sbjct: 308 MIFVNMP-EVSVVSWNVMIAG---YGQKSQSSKAIEYL 341


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 246/441 (55%), Gaps = 39/441 (8%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACA 69
           A  LF ++ +++IVSWNAM+A + QN L+ KAL+L   M   +   P+  T+T+VL ACA
Sbjct: 143 AESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACA 202

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------ISF 120
               +R GK++HA I+R  + ++  +TNAL   YAK G +  A+ + +         ISF
Sbjct: 203 NLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISF 262

Query: 121 -------------------------RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155
                                    RD V++  +IVGY Q     E++ LF  M   G +
Sbjct: 263 TALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPE 322

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
            +  +    +S CA+LA +  GK+IH   IR  L     V+N+I+  Y RSG    A ++
Sbjct: 323 PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRM 382

Query: 216 FD--CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
           FD  C   K++ +W ++I+     G+ + A+ LFE M   GV  D ++Y+ +L+ACSH G
Sbjct: 383 FDQVCWR-KETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAG 441

Query: 274 LVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
            V +GK+Y+D+++ +  + P   HYACMVDLL RAGL  +A + I+ +PVEPDA  WG+L
Sbjct: 442 FVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSL 501

Query: 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392
           L ACR++ N EL   AAE L  + P + G Y  ++N+Y+  G+W +A+++ +  K +  +
Sbjct: 502 LSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVR 561

Query: 393 KNPGCSWVQTRDEVQDFVVND 413
           K  G SW   R ++  F  +D
Sbjct: 562 KETGFSWTHIRSKIHVFGADD 582



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 208/489 (42%), Gaps = 113/489 (23%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+AKS R A+A  +F  + E++ VSW  MV    +     +A++ + +M      P   T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC-------------- 106
           LTNVL +CA       G+++H+ +++ GL   + + N++ +MY KC              
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 107 -----------------GCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                            G ++LA+++F ++  R  VS+N +I GY+Q    +++L LFS 
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 149 M-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           M     M  D  +    +SACANL  ++ GK++H   +R  +  +  V N+++  Y +SG
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 240

Query: 208 RIDLANKIFD---------------------------------CLPVKDSASWNTLILGY 234
            ++ A +I D                                  +  +D  +W  +I+GY
Sbjct: 241 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY 300

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEM------Q 286
              G  D AI+LF +M     G +P SY   A+L+ C+    ++ GK+           Q
Sbjct: 301 EQNGRNDEAIDLFRSMIT--CGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQ 358

Query: 287 ADSV--------------------------KPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           + SV                          +   + +  M+  L + G  E+AV L + +
Sbjct: 359 SSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEM 418

Query: 321 ---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-----CGYYILLSNMYAE 372
               VEPD   +  +L AC   G V  G     +   +K +H       +Y  + ++ A 
Sbjct: 419 LRAGVEPDRITYVGVLSACSHAGFVNEG---KRYYDQIKNEHQIAPEMSHYACMVDLLAR 475

Query: 373 AGKWDEASK 381
           AG + EA +
Sbjct: 476 AGLFSEAQE 484



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 4/234 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A  +F  +  +++V+W AM+  + QN    +A+ L R M      PNS TL
Sbjct: 269 YVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTL 328

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL  CA    L  GK+IH R IR  L     ++NA+  MYA+ G    A+ +F+ + +
Sbjct: 329 AAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCW 388

Query: 121 RDE-VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           R E +++  +IV  +Q     E++ LF EM   G++ D ++++G +SAC++   + +GK 
Sbjct: 389 RKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKR 448

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
            +     +H +   +     ++D   R+G    A +    +PV+ D+ +W +L+
Sbjct: 449 YYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLL 502



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 132/286 (46%), Gaps = 43/286 (15%)

Query: 102 MYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS 160
           M+AK G L  A+ VF  +  RD VS+ +++VG ++     E++    +M   G      +
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
               +S+CA   A   G+++H   ++  L + + VANS+L+ Y + G  + A  +F+ +P
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
           V+  +SWN ++     LG +D A +LFE+M +  +    VS+ A++   +  GL  K  K
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSI----VSWNAMIAGYNQNGLDAKALK 176

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
            F  M         +H + M                       PD     ++L AC   G
Sbjct: 177 LFSRM---------LHESSMA----------------------PDEFTITSVLSACANLG 205

Query: 341 NVELGAWAAEHLFMLKPQHCGYYILLSN----MYAEAGKWDEASKV 382
           NV +G     H ++L+ +   Y   ++N     YA++G  + A ++
Sbjct: 206 NVRIGKQV--HAYILRTE-MAYNSQVTNALISTYAKSGSVENARRI 248


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 158/416 (37%), Positives = 243/416 (58%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA       A +LF  +  +N V W +M++ + +N    +AL L ++M      P+ VT
Sbjct: 123 MYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVT 182

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  ++ ACA    L  G ++H+ I    +     L +AL +MYAKCG L  A+ VF+ +S
Sbjct: 183 MATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLS 242

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRL-LGMKHDVVSFMGAISACANLAAIKQGK 178
            +D  +++ LI GY + +  +E+L LF E+     M+ + V+ +  ISACA L  ++ G+
Sbjct: 243 DKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGR 302

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H    R      + + NS++D +++ G ID A +IFD +  KD  SWN+++ G  + G
Sbjct: 303 WVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHG 362

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHY 297
               A+  F  M+   +  D +++I +LTACSH GLV++GKK F E++A   V+    HY
Sbjct: 363 LGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHY 422

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLL RAGL+ +A + I+ +P++PD  IWG++LGACR+Y N+ELG  AA  L  L+P
Sbjct: 423 GCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEP 482

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            + G YILLSN+YA    W+E  KVRELM  +  +K PGCS V   +    F+  D
Sbjct: 483 TNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGD 538



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 161/322 (50%), Gaps = 4/322 (1%)

Query: 22  NIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSVTLTNVLPACARGHFLRPGKEI 80
           ++++WN+M+  F  + +  +ALQ   EM   +   P+  T  ++L  CA     + GK +
Sbjct: 42  DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101

Query: 81  HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDC 139
           H ++++  L+ DL++   L +MYA CG L  A+ +F  +  R++V +  +I GY +    
Sbjct: 102 HGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCP 161

Query: 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
           +E+L L+ +M   G   D V+    +SACA L  +  G ++H       +     + +++
Sbjct: 162 NEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSAL 221

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF-EAMREDGVGYD 258
           ++ Y + G +  A ++FD L  KD  +W+ LI GY        A+ LF E      +  +
Sbjct: 222 VNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPN 281

Query: 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
            V+ +A+++AC+  G +E G+   D +       +      ++D+  + G ++ A ++  
Sbjct: 282 EVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFD 341

Query: 319 NLPVEPDANIWGALLGACRIYG 340
           ++  + D   W +++    ++G
Sbjct: 342 SMSYK-DLISWNSMVNGLALHG 362


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/440 (35%), Positives = 246/440 (55%), Gaps = 37/440 (8%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACA 69
           A  LF ++ +++IVSWNAM+A + QN L+ KAL+L   M   +   P+  T+T+VL ACA
Sbjct: 249 AESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACA 308

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------ISF 120
               +R GK++HA I+R  + ++  +TNAL   YAK G +  A+ + +         ISF
Sbjct: 309 NLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISF 368

Query: 121 -------------------------RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155
                                    RD V++  +IVGY Q     E++ LF  M   G +
Sbjct: 369 TALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPE 428

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
            +  +    +S CA+LA +  GK+IH   IR  L     V+N+I+  Y RSG    A ++
Sbjct: 429 PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRM 488

Query: 216 FDCLP-VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL 274
           FD +   K++ +W ++I+     G+ + A+ LFE M   GV  D ++Y+ +L+ACSH G 
Sbjct: 489 FDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGF 548

Query: 275 VEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           V +GK+Y+D+++ +  + P   HYACMVDLL RAGL  +A + I+ +PVEPDA  WG+LL
Sbjct: 549 VNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLL 608

Query: 334 GACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKK 393
            ACR++ N EL   AAE L  + P + G Y  ++N+Y+  G+W +A+++ +  K +  +K
Sbjct: 609 SACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRK 668

Query: 394 NPGCSWVQTRDEVQDFVVND 413
             G SW   R ++  F  +D
Sbjct: 669 ETGFSWTHIRSKIHVFGADD 688



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 208/489 (42%), Gaps = 113/489 (23%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+AKS R A+A  +F  + E++ VSW  MV    +     +A++ + +M      P   T
Sbjct: 107 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 166

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC-------------- 106
           LTNVL +CA       G+++H+ +++ GL   + + N++ +MY KC              
Sbjct: 167 LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 226

Query: 107 -----------------GCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                            G ++LA+++F ++  R  VS+N +I GY+Q    +++L LFS 
Sbjct: 227 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 286

Query: 149 M-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           M     M  D  +    +SACANL  ++ GK++H   +R  +  +  V N+++  Y +SG
Sbjct: 287 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 346

Query: 208 RIDLANKIFD---------------------------------CLPVKDSASWNTLILGY 234
            ++ A +I D                                  +  +D  +W  +I+GY
Sbjct: 347 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY 406

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEM------Q 286
              G  D AI+LF +M     G +P SY   A+L+ C+    ++ GK+           Q
Sbjct: 407 EQNGRNDEAIDLFRSMIT--CGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQ 464

Query: 287 ADSV--------------------------KPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           + SV                          +   + +  M+  L + G  E+AV L + +
Sbjct: 465 SSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEM 524

Query: 321 ---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-----CGYYILLSNMYAE 372
               VEPD   +  +L AC   G V  G     +   +K +H       +Y  + ++ A 
Sbjct: 525 LRAGVEPDRITYVGVLSACSHAGFVNEG---KRYYDQIKNEHQIAPEMSHYACMVDLLAR 581

Query: 373 AGKWDEASK 381
           AG + EA +
Sbjct: 582 AGLFSEAQE 590



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 4/234 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A  +F  +  +++V+W AM+  + QN    +A+ L R M      PNS TL
Sbjct: 375 YVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTL 434

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL  CA    L  GK+IH R IR  L     ++NA+  MYA+ G    A+ +F+ + +
Sbjct: 435 AAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCW 494

Query: 121 RDE-VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           R E +++  +IV  +Q     E++ LF EM   G++ D ++++G +SAC++   + +GK 
Sbjct: 495 RKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKR 554

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
            +     +H +   +     ++D   R+G    A +    +PV+ D+ +W +L+
Sbjct: 555 YYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLL 608



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 138/296 (46%), Gaps = 43/296 (14%)

Query: 92  DLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMR 150
           ++F  N+L  M+AK G L  A+ VF  +  RD VS+ +++VG ++     E++    +M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 151 LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210
             G      +    +S+CA   A   G+++H   ++  L + + VANS+L+ Y + G  +
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSE 216

Query: 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
            A  +F+ +PV+  +SWN ++     LG +D A +LFE+M +  +    VS+ A++   +
Sbjct: 217 TATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSI----VSWNAMIAGYN 272

Query: 271 HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWG 330
             GL  K  K F  M         +H + M                       PD     
Sbjct: 273 QNGLDAKALKLFSRM---------LHESSMA----------------------PDEFTIT 301

Query: 331 ALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN----MYAEAGKWDEASKV 382
           ++L AC   GNV +G     H ++L+ +   Y   ++N     YA++G  + A ++
Sbjct: 302 SVLSACANLGNVRIGKQV--HAYILRTE-MAYNSQVTNALISTYAKSGSVENARRI 354


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 251/416 (60%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  +  +++VSWN M+ +  QN  E +AL L+ +M       +  T
Sbjct: 108 MYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFT 167

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +++VL ACA    L   + +HA  I+  ++ ++F+  AL D+YAKCG +  A  VF ++ 
Sbjct: 168 ISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP 227

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  V+++ +  GY Q     ++L+LF +    G+KHD       I ACA LAA+ +GK+
Sbjct: 228 DRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQ 287

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           ++ +  +    +++FVA+S++D Y + G I+ + K+F  +  ++   WN +I G      
Sbjct: 288 VNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHAR 347

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYA 298
               + LFE M++ G+  + V+++++L+AC H GLV+KG+KYFD M  +  + P   HY+
Sbjct: 348 SLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYS 407

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD L RAG + +A  LI  LP    A++WG+LL +CR +GN+EL   AA+ LF ++P 
Sbjct: 408 CMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPH 467

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G Y+LLSNMYA  GKWDE +K+R+L+K  + KK  G SW++ +D+V  F+V +R
Sbjct: 468 NSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGER 523



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 140/273 (51%), Gaps = 2/273 (0%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L  CA+   L  GK  HA+I+  GL  DL  +N L +MY+KCG ++ A+ VF+ +  R 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            VS+N +I   +Q  + +E+L L  +M+  G      +    + ACA   A+ + + +H 
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             I+  +  ++FVA ++LD Y + G +  A  +F+ +P +   +W+++  GY      + 
Sbjct: 190 FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ 249

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
           A+ LF    E G+ +D     +++ AC+    + +GK+    +            + ++D
Sbjct: 250 ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLID 309

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +  + G +E++ K+ +++  + +  +W A++  
Sbjct: 310 MYAKCGGIEESYKVFRDVE-KRNVVLWNAMISG 341



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 1/164 (0%)

Query: 159 VSFMGAI-SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
           VSF+  I   CA    + QGK  H   +   L T L  +N +++ Y++ G +D A ++FD
Sbjct: 64  VSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFD 123

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            +P +   SWNT+I      GE + A++L   M+ +G  +   +  ++L AC+    + +
Sbjct: 124 EMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSE 183

Query: 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
            +         ++         ++D+  + GLM+DAV + +++P
Sbjct: 184 CQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP 227


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 153/419 (36%), Positives = 247/419 (58%), Gaps = 5/419 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R  +A  +F +I  +N V+WNA+++ +AQ      A  L+  M +     +  T
Sbjct: 144 MYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGT 203

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--I 118
              +L         +   ++HA+I++ GL  D  + NA+   Y++CG +  A+ VF+  I
Sbjct: 204 FAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAI 263

Query: 119 SFRD--EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
             RD   VS+N ++ G+SQ+    ++L  F  MR   +  D  +F   + +C++LA ++ 
Sbjct: 264 ETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQL 323

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+++H + ++     + FVA+S++  Y++ G I+ A K FD  P   S +WN+LI GY  
Sbjct: 324 GQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQ 383

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM- 295
            G    A++LF  M++  V  D ++++A+LTACSH GLVE+G  +   M++D   P  M 
Sbjct: 384 HGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRME 443

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYACM+DLLGRAG +++A  LI+ +P EPDA +W  LLGACR  G++EL +  A HL  L
Sbjct: 444 HYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLEL 503

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +P+    Y+LLS+M+    +W+E + ++ LMK R  KK PG SW++ ++EV+ F   DR
Sbjct: 504 EPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDR 562



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 199/427 (46%), Gaps = 44/427 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      AS +F   ++++ VSWN M+A F        AL+ ++ M  +    +  + 
Sbjct: 44  YAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSF 103

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            ++L   A   ++  G+++H+ +++ G   ++F  +AL DMYAKC  +  A  VF +I+ 
Sbjct: 104 GSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINI 163

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ V++N LI GY+Q  D   +  L   M L G++ D  +F   ++   +    K   ++
Sbjct: 164 RNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQV 223

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD-CLPVK--DSASWNTLILGYGML 237
           H   ++  L +   V N+I+  Y+  G I+ A ++FD  +  +  D  SWN+++ G+   
Sbjct: 224 HAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILTGFSQS 283

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G  + A+  FE MR   V  D  ++ A+L +CS    ++ G++    +     +P     
Sbjct: 284 GLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVA 343

Query: 298 ACMVDLLGRAGLMEDAVK----------------------------------LIKNLPVE 323
           + ++ +  + G++EDA K                                  L+K+  V+
Sbjct: 344 SSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVK 403

Query: 324 PDANIWGALLGACRIYGNVELGAW----AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA 379
            D   + A+L AC   G VE G W    + E  + + P+   +Y  + ++   AG+ DEA
Sbjct: 404 LDHITFVAVLTACSHIGLVEEG-WSFLKSMESDYGIPPR-MEHYACMIDLLGRAGRLDEA 461

Query: 380 SKVRELM 386
             + E M
Sbjct: 462 KALIEAM 468



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 154/343 (44%), Gaps = 45/343 (13%)

Query: 81  HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDC 139
           H   I+ G    ++  N +   YAKCG + +A  +F   S RD VS+N +I G+    + 
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
             +L     M+  G   D  SF   +   A +  ++ G+++H + ++     ++F  +++
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSAL 141

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
           LD Y +  R++ A ++F  + +++S +WN LI GY  +G+  TA  L + M  +GV  D 
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDD 201

Query: 260 VSYI-----------------------------------AILTACSHGGLVEKGKKYFDE 284
            ++                                    AI+TA S  G +E  ++ FD 
Sbjct: 202 GTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDG 261

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGN 341
              ++     + +  ++    ++GL EDA+K  +N+    V  D   + A+L +C     
Sbjct: 262 -AIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLAT 320

Query: 342 VELGAWAAEHLFMLKPQHCGYYILLSN---MYAEAGKWDEASK 381
           ++LG     H+ +LK        + S+   MY++ G  ++A K
Sbjct: 321 LQLGQQV--HVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARK 361



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 88/179 (49%), Gaps = 1/179 (0%)

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
           ++  A+ +    H + I+      ++ AN+I+  Y + G I +A+K+F     +D+ SWN
Sbjct: 10  SSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWN 69

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           T+I G+  LG  +TA+   ++M+  G   D  S+ +IL   +  G VE G++    M   
Sbjct: 70  TMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKM 129

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAW 347
             +      + ++D+  +   +EDA ++ K++ +  ++  W AL+      G+     W
Sbjct: 130 GYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIR-NSVTWNALISGYAQVGDRGTAFW 187


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 154/436 (35%), Positives = 254/436 (58%), Gaps = 37/436 (8%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACARGHF 73
           F  +AE++IV+WN+M++ F Q   +L+AL +  +M   +   P+  TL +VL ACA    
Sbjct: 235 FEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEK 294

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC------------------------- 108
           L  GK+IH+ I+  G +    + NAL  MY++CG                          
Sbjct: 295 LCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALL 354

Query: 109 --------LNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
                   +N A+N+F ++  RD V++  +IVGY Q     E+++LF  M   G + +  
Sbjct: 355 DGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSY 414

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           +    +S  ++LA++  GK+IHG  ++      + V+N+++  Y ++G I  A++ FD +
Sbjct: 415 TLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLI 474

Query: 220 PV-KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
              +D+ SW ++I+     G  + A+ LFE M  +G+  D ++Y+ + +AC+H GLV +G
Sbjct: 475 RCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQG 534

Query: 279 KKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
           ++YFD M+  D + PT  HYACMVDL GRAGL+++A + I+ +P+EPD   WG+LL ACR
Sbjct: 535 RQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACR 594

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           ++ N++LG  AAE L +L+P++ G Y  L+N+Y+  GKW+EA+K+R+ MK    KK  G 
Sbjct: 595 VHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGF 654

Query: 398 SWVQTRDEVQDFVVND 413
           SW++ + +V  F V D
Sbjct: 655 SWIEVKHKVHVFGVED 670



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 191/458 (41%), Gaps = 77/458 (16%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K          F  + +++ VSW  M+  +       KA++++ +M      P   TL
Sbjct: 90  YSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTL 149

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---- 117
           TNVL + A    +  GK++H+ I++ GL  ++ ++N+L +MYAKCG   +A+ VF+    
Sbjct: 150 TNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVV 209

Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                       ++ RD V++N +I G++Q      +L +FS+M
Sbjct: 210 RDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKM 269

Query: 150 -RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
            R   +  D  +    +SACANL  +  GK+IH   +         V N+++  Y+R G 
Sbjct: 270 LRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGG 329

Query: 209 IDLANK---------------------------------IFDCLPVKDSASWNTLILGYG 235
           ++ A +                                 IF  L  +D  +W  +I+GY 
Sbjct: 330 VETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYE 389

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G    AINLF +M   G G  P SY   L A            +  ++   +VK  E+
Sbjct: 390 QHGSYGEAINLFRSMV--GGGQRPNSY--TLAAMLSVASSLASLSHGKQIHGSAVKSGEI 445

Query: 296 HYA----CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
           +       ++ +  +AG +  A +    +  E D   W +++ A   +G+ E      E 
Sbjct: 446 YSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFET 505

Query: 352 LFM--LKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           + M  L+P H  Y  + S     AG  ++  +  ++MK
Sbjct: 506 MLMEGLRPDHITYVGVFSAC-THAGLVNQGRQYFDMMK 542



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 129/277 (46%), Gaps = 48/277 (17%)

Query: 56  PNSVTLTNVLPAC----------ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK 105
           P  ++L+ +L  C          + G F    + +H R+I+ GL F ++L N L ++Y+K
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRF--TAQLVHCRVIKSGLMFSVYLMNNLMNVYSK 61

Query: 106 CGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM--------------- 149
            G    A+ +F+ +  R   S+N ++  YS+  D   +   F ++               
Sbjct: 62  TGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGY 121

Query: 150 RLLGMKHDVVSFMG----------------AISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           + +G  H  +  MG                 +++ A    ++ GK++H   ++  L  ++
Sbjct: 122 KNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNV 181

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
            V+NS+L+ Y + G   +A  +FD + V+D +SWN +I  +  +G++D A+  FE M E 
Sbjct: 182 SVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAE- 240

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
               D V++ ++++  +  G   +    F +M  DS+
Sbjct: 241 ---RDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSL 274



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 78/157 (49%), Gaps = 7/157 (4%)

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+  L   +++ N++++ Y+++G    A K+FD +P++ + SWNT++  Y   G+
Sbjct: 36  VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +D+    F+ + +     D VS+  ++    + G   K  +   +M  + ++PT+     
Sbjct: 96  MDSTCEFFDQLPQ----RDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTN 151

Query: 300 MVDLLGRAGLMEDAVKL---IKNLPVEPDANIWGALL 333
           ++  +     ME   K+   I  L +  + ++  +LL
Sbjct: 152 VLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLL 188


>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 154/408 (37%), Positives = 246/408 (60%), Gaps = 10/408 (2%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  ++EKN+V+W A+++  +Q +   ++L+L  +M      PNS+T  + L AC+    
Sbjct: 99  VFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQA 158

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVG 132
           +R G++IH  + + G++FDL + +AL DMY+KCG L  A  +F  +   DEVS  +++VG
Sbjct: 159 IREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVG 218

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ----GKEIHGVTIRKH 188
            +Q     ES+ +F +M    +K+ VV     ISA   +  I      GK+IH + I+K 
Sbjct: 219 LAQNGFEEESIQVFVKM----VKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKS 274

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
             ++ FV N +++ Y++ G +D + KIF  +P ++S SWN++I  +   G    A+ L+E
Sbjct: 275 FGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYE 334

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            MR +GV    V+++++L AC+H GLVEKG  + + M  D  + P   HYAC+VD++GRA
Sbjct: 335 EMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRA 394

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           GL+ +A K I+ LP +P   +W ALLGAC I+GN E+G +AA  LF+  P+    YILL+
Sbjct: 395 GLLNEAKKFIERLPEKPGILVWQALLGACSIHGNSEMGKYAANQLFLQAPESPAPYILLA 454

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           N+Y+  GKW E ++  + MK     K  G SW++   ++  FVV DRM
Sbjct: 455 NIYSSEGKWKERARTIKKMKDMGVTKETGISWIEIEKQIHSFVVEDRM 502



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 169/325 (52%), Gaps = 7/325 (2%)

Query: 21  KNIVSWNAMVANFAQN---RLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPG 77
           K+ +SWN+ ++    N    +  +  + + E  I+ +F +  TLT VL AC +  F    
Sbjct: 4   KDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIY-QF-DQATLTTVLTACDKPEFCYVS 61

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           K IH+ +   G   ++ + NAL   Y +CGC +  + VF+ +S ++ V++  +I G SQ 
Sbjct: 62  KMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQG 121

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               ESL LF +MR   +  + ++++ ++ AC+ L AI++G++IHG+  +  +H  L + 
Sbjct: 122 QFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIE 181

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           ++++D Y++ G ++ A KIF+     D  S   +++G    G  + +I +F  M ++GV 
Sbjct: 182 SALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVV 241

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            DP    AIL        +  GK+    +   S          ++++  + G ++D++K+
Sbjct: 242 IDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKI 301

Query: 317 IKNLPVEPDANIWGALLGACRIYGN 341
              +P + ++  W +++ A   +GN
Sbjct: 302 FCWMP-QRNSVSWNSMIAAFARHGN 325



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 121/240 (50%), Gaps = 15/240 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +F +  E + VS   ++   AQN  E +++Q+  +M  +    +   
Sbjct: 187 MYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNM 246

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++ +L        L  GK+IH+ II+K    + F+ N L +MY+KCG L+ +  +F  + 
Sbjct: 247 ISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMP 306

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
            R+ VS+N +I  +++  + S +L L+ EMRL G+    V+F+  + ACA++  +++G  
Sbjct: 307 QRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMG 366

Query: 178 -----KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA-SWNTLI 231
                 + +G+  R   +        ++D   R+G ++ A K  + LP K     W  L+
Sbjct: 367 FLESMAKDYGIGPRMEHYA------CVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALL 420



 Score = 44.7 bits (104), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 54/211 (25%)

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV-GYDPVSYIAILTACS------- 270
           +P+KD+ SWN+ I G    G+++    +F+ + E G+  +D  +   +LTAC        
Sbjct: 1   MPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYV 60

Query: 271 ----------------------------HGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
                                         G    G++ FDEM   +V    + +  ++ 
Sbjct: 61  SKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNV----VTWTAVIS 116

Query: 303 LLGRAGLMEDAVKL---IKNLPVEPDANIWGALLGACRIYGNVELG------AWAAEHLF 353
            L +    E+++KL   +++ PV+P++  + + L AC     +  G       W     F
Sbjct: 117 GLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHF 176

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
            L  +       L +MY++ G  ++A K+ E
Sbjct: 177 DLCIESA-----LMDMYSKCGSLEDAWKIFE 202


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 145/415 (34%), Positives = 251/415 (60%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+    + + L+ ++ +++++SWNA ++      +  + L +   M      PN  T
Sbjct: 459 MYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYT 518

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L +C+    +  G+++HA II+  L+ + F+  AL DMYAKC  L  A   FN +S
Sbjct: 519 FISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLS 578

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD  ++ ++I  Y+QT+   ++L+ F +M+  G+K +  +  G +S C++LA+++ G++
Sbjct: 579 VRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQ 638

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H +  +    + +FV ++++D Y + G ++ A  +F+ L  +D+ +WNT+I GY   G+
Sbjct: 639 LHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQ 698

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A+  F  M ++G+  D V++  IL+ACSH GLVE+GK++F+ M  D  + PT  H A
Sbjct: 699 GNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCA 758

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGR G  ++    I+ + +  +A IW  +LGA +++ N+ LG  AA  LF L+P+
Sbjct: 759 CMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPE 818

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               YILLSN++A  G+WD+  +VR LM S+  KK PGCSWV+   +V  FV +D
Sbjct: 819 EESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHD 873



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 167/343 (48%), Gaps = 5/343 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK    A A  +   + ++++VSW A++           ++ L +EM      PN  T
Sbjct: 156 VYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFT 215

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L   L AC+    L  GK++HA+  + GL  DLF+ +AL D+YAKCG + LA  +F  + 
Sbjct: 216 LATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP 275

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +++V++N+L+ GY+Q  D +  L LF  M  L +K +  +    +  CAN   +KQG+ 
Sbjct: 276 EQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQV 335

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH + I+     + F+   ++D Y++ G    A  +F  +   D   W+ LI      G+
Sbjct: 336 IHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQ 395

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + +I LF  MR      +  +  ++L+A ++ G ++ G+     +     +        
Sbjct: 396 SEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNA 455

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA---CRIY 339
           +V +  + G + D  KL +++ V+ D   W A L     C +Y
Sbjct: 456 LVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSGLHDCGMY 497



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 2/334 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK      AS +F  + E+N V+WN ++  +AQ       L+L   M   +   N  T
Sbjct: 257 LYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFT 316

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           LT VL  CA    L+ G+ IH+ II+ G   + F+   L DMY+KCG    A  VF  I 
Sbjct: 317 LTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK 376

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V ++ LI    Q     ES+ LF  MRL     +  +    +SA  N   ++ G+ 
Sbjct: 377 KPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQS 436

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH    +    T + V+N+++  Y ++G +    K+++ +  +D  SWN  + G    G 
Sbjct: 437 IHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGM 496

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D  + +F  M E+G   +  ++I+IL +CS    V  G++    +  + +         
Sbjct: 497 YDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTA 556

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           ++D+  +   +EDA      L V  D   W  ++
Sbjct: 557 LIDMYAKCMYLEDADVAFNRLSVR-DLFTWTVII 589



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 141/283 (49%), Gaps = 2/283 (0%)

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
           +++L  CA    L   K IH  I++  +N D  L  +L ++YAKC     A+ V   +  
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VS+  LI G       ++S+ LF EM+  G+  +  +    + AC+   A+  GK++
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQM 235

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H    +  L   LFV ++++D Y + G I+LA+K+F  +P ++  +WN L+ GY   G+V
Sbjct: 236 HAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDV 295

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
              + LF +M E  V  +  +   +L  C++   +++G+     +     +  E     +
Sbjct: 296 TGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGL 355

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           VD+  + GL  DA+ + K +  +PD  +W AL+      G  E
Sbjct: 356 VDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALITCLDQQGQSE 397


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 159/415 (38%), Positives = 247/415 (59%), Gaps = 4/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+      EA  +F     +++VSW AM++ +    +  KAL+  + M      P+ +T
Sbjct: 352 MYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEIT 411

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           +  VL AC+    L  G  +H    +KGL     + N+L DMYAKC C++ A  +F+ + 
Sbjct: 412 IAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTL 471

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+  +I+G    + C E+L  F EM +  +K + V+ +  +SACA + A+  GKE
Sbjct: 472 EKNIVSWTSIILGLRINNRCFEALFFFREM-IRRLKPNSVTLVCVLSACARIGALTCGKE 530

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +R  +    F+ N+ILD Y R GR++ A K F  +   +  SWN L+ GY   G+
Sbjct: 531 IHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVD-HEVTSWNILLTGYAERGK 589

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A  LF+ M E  V  + V++I+IL ACS  G+V +G +YF+ M+   S+ P   HYA
Sbjct: 590 GAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYA 649

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGR+G +E+A + I+ +P++PD  +WGALL +CRI+ +VELG  AAE++F     
Sbjct: 650 CVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTT 709

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             GYYILLSN+YA+ GKWD+ ++VR++M+      +PGCSWV+ +  V  F+ +D
Sbjct: 710 SVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSD 764



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 164/339 (48%), Gaps = 2/339 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ +     +A Y+F  + ++N+ SWN +V  +A+  L  +AL L   M      P+  T
Sbjct: 150 MFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYT 209

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL  C     L  G+EIH  +IR G   D+ + NAL  MY KCG +N A+ VF+ + 
Sbjct: 210 FPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMP 269

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+N +I GY +   C E L LF  M    +  D+++    I+AC  L   + G++
Sbjct: 270 NRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQ 329

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R        + NS++  Y+  G I+ A  +F     +D  SW  +I GY     
Sbjct: 330 IHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLM 389

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+  ++ M  +G+  D ++   +L+ACS    ++ G    +  +   +    +    
Sbjct: 390 PQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANS 449

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
           ++D+  +   ++ A+++  +  +E +   W +++   RI
Sbjct: 450 LIDMYAKCKCIDKALEIFHS-TLEKNIVSWTSIILGLRI 487



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 132/285 (46%), Gaps = 5/285 (1%)

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGY 133
           + G  +++ +     +  L L NAL  M+ + G L  A  VF  +  R+  S+N+L+ GY
Sbjct: 123 KEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGY 182

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           ++     E+L L+  M  +G+K DV +F   +  C  +  + +G+EIH   IR    + +
Sbjct: 183 AKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDV 242

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
            V N+++  Y + G ++ A  +FD +P +D  SWN +I GY   G     + LF  M + 
Sbjct: 243 DVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKY 302

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
            V  D ++  +++TAC   G    G++    +           +  ++ +    GL+E+A
Sbjct: 303 PVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEA 362

Query: 314 VKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
             +        D   W A++     Y N  +   A E   M++ +
Sbjct: 363 ETVFSRTECR-DLVSWTAMISG---YENCLMPQKALETYKMMEAE 403



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 113/287 (39%), Gaps = 39/287 (13%)

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
            ++S    M  L +  +  +++  I  C    A K+G  ++        H  L + N++L
Sbjct: 89  RAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALL 148

Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
             + R G +  A  +F  +  ++  SWN L+ GY   G  D A++L+  M   GV  D  
Sbjct: 149 SMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVY 208

Query: 261 SYIAILTACSHGGLVEKGK-------KYFDEMQADSVKP-TEMHYAC------------- 299
           ++  +L  C     + +G+       +Y  E   D V     M+  C             
Sbjct: 209 TFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKM 268

Query: 300 ----------MVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGA 346
                     M+      G+  + ++L   +   PV+PD     +++ AC + G+  LG 
Sbjct: 269 PNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGR 328

Query: 347 WAAEHLFMLKPQHC---GYYILLSNMYAEAGKWDEASKVRELMKSRE 390
               H ++L+ +       +  L  MY+  G  +EA  V    + R+
Sbjct: 329 QI--HGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRD 373


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 154/421 (36%), Positives = 253/421 (60%), Gaps = 10/421 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  R  +A  +F  +  +++VSWN+++A + QN     AL+  + M +    P+ +T
Sbjct: 266 MYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLT 325

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           + ++    ++    R  + I   +IR+  L+ D+ + NAL +MYAK G +N A  VF+ +
Sbjct: 326 VVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQL 385

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGA----ISACANLAAI 174
             +D +S+N L+ GY+Q    SE++  ++ M       D +   G     I A +++ A+
Sbjct: 386 PRKDTISWNTLVTGYTQNGLASEAIDAYNMMEEC---RDTIPNQGTWVSIIPAYSHVGAL 442

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           +QG +IH   I+  L+  +FVA  ++D Y + GR++ A  +F  +P   S  WN +I   
Sbjct: 443 QQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASL 502

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
           G+ G  + A+ LF+ M  + V  D ++++++L+ACSH GLV++G+K FD MQ +  +KP+
Sbjct: 503 GIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPS 562

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY CMVDLLGRAG +E A +L++N+P++PDA+IWGALL AC+IYGN ELG  A++ L 
Sbjct: 563 LKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLL 622

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            +  ++ GYY+LLSN+YA   KW+   KVR L + R  +K PG S V    + + F   +
Sbjct: 623 EVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGN 682

Query: 414 R 414
           +
Sbjct: 683 Q 683



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/407 (29%), Positives = 220/407 (54%), Gaps = 13/407 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y++      A  +F ++  K++ SWNAM++ F QN     AL ++  M       +++T
Sbjct: 165 LYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTIT 224

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + ++LP CA+   +  G  IH  +++ GL+ D+F++NAL +MY+K G L  AQ VF+ + 
Sbjct: 225 VASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQME 284

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N +I  Y Q +D S +L  F  M+L G++ D+++ +   S  + L+  +  + 
Sbjct: 285 VRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRS 344

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           I G  IR+  L   + + N++++ Y + G ++ A+ +FD LP KD+ SWNTL+ GY   G
Sbjct: 345 ILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNG 404

Query: 239 EVDTAINLFEAMRE--DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
               AI+ +  M E  D +  +  ++++I+ A SH G +++G K   ++  +S+      
Sbjct: 405 LASEAIDAYNMMEECRDTIP-NQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFV 463

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM-- 354
             C++DL G+ G +EDA+ L   +P +     W A++ +  I+G  E      + +    
Sbjct: 464 ATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIHGRGEEALQLFKDMLAER 522

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS----REAKKNPGC 397
           +K  H  +  LLS   + +G  DE  K  ++M+     + + K+ GC
Sbjct: 523 VKADHITFVSLLSAC-SHSGLVDEGQKCFDIMQKEYGIKPSLKHYGC 568



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 140/262 (53%), Gaps = 8/262 (3%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH----NEFPNSVTLTNVLPACAR 70
           F  I +KNI SWN++++ + +     +A+  V ++       +  P+  T   +L AC  
Sbjct: 77  FDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS 136

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
              L  GK++H  + + G   D+F+  +L  +Y++ G L++A  VF ++  +D  S+N +
Sbjct: 137 ---LVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAM 193

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I G+ Q  + + +L + + M+  G+K D ++    +  CA    +  G  IH   ++  L
Sbjct: 194 ISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGL 253

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            + +FV+N++++ Y++ GR+  A  +FD + V+D  SWN++I  Y    +  TA+  F+ 
Sbjct: 254 DSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKG 313

Query: 250 MREDGVGYDPVSYIAILTACSH 271
           M+  G+  D ++ +++ +  S 
Sbjct: 314 MQLGGIRPDLLTVVSLTSIFSQ 335



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 130/263 (49%), Gaps = 9/263 (3%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           K++HA ++  G + ++ L+  L ++Y   G ++L+++ F+ I  ++  S+N +I  Y + 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 137 SDCSESLS----LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
               E+++    LFS      ++ D  +F   + AC +L     GK++H    +      
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLV---DGKKVHCCVFKMGFEDD 155

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +FVA S++  Y+R G +D+A+K+F  +PVKD  SWN +I G+   G    A+ +   M+ 
Sbjct: 156 VFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKG 215

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
           +GV  D ++  +IL  C+    V  G      +    +         ++++  + G ++D
Sbjct: 216 EGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQD 275

Query: 313 AVKLIKNLPVEPDANIWGALLGA 335
           A  +   + V  D   W +++ A
Sbjct: 276 AQMVFDQMEVR-DLVSWNSIIAA 297



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 12/187 (6%)

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
           H    F    ++C N+ A K+   +H + +      ++ ++  +++ Y   G I L+   
Sbjct: 20  HKDADFNALFNSCVNVNATKK---LHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRST 76

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAIN----LFEAMREDGVGYDPVSYIAILTACSH 271
           FD +  K+  SWN++I  Y   G+   A+N    LF       +  D  ++  IL AC  
Sbjct: 77  FDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV- 135

Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
             LV+ GKK    +     +      A +V L  R G+++ A K+  ++PV+ D   W A
Sbjct: 136 -SLVD-GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVK-DVGSWNA 192

Query: 332 LL-GACR 337
           ++ G C+
Sbjct: 193 MISGFCQ 199


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 148/412 (35%), Positives = 243/412 (58%), Gaps = 2/412 (0%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           KS        +F  ++  ++ SWN +++ ++QN    +A++L REM   +  P+  TL  
Sbjct: 336 KSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAI 395

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L + A    L  G+++HA   +     D++L + L  MY+KCG + +A+ +F+ I+  D
Sbjct: 396 ILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELD 455

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            V +N ++ G S  S   E+ + F +MR  GM     S+   +S CA L+++ QG+++H 
Sbjct: 456 IVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHS 515

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
              R+      FV ++++D Y++ G +D A  +FD +  K++ +WN +I GY   G  D 
Sbjct: 516 QIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDE 575

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMV 301
           A+ L+E M   G   D ++++A+LTACSH GLV+ G K F+ MQ +  V+P   HY C++
Sbjct: 576 AVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCII 635

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361
           D LGRAG + +A  LI  +P + D  IW  LL +CR+Y +V L   AAE LF L PQ+  
Sbjct: 636 DSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSA 695

Query: 362 YYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            Y+LL+N+Y+  G+WD+A  VRELM   +  K+PG SW++ ++ +Q F+V+D
Sbjct: 696 PYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIEHKNGMQAFMVDD 747



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 192/408 (47%), Gaps = 37/408 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK +    +  LF  + +++I +WNA++  + +      A  L  EMP  N   +  TL
Sbjct: 50  YAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERN-IVSWNTL 108

Query: 62  TNVLP---ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
            + L    AC     +  G+  H   I+ GL+ ++++ NAL  MYAKC C+  A   F +
Sbjct: 109 ISALTRNGACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGD 168

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN------- 170
           +   +EVS+  ++ G + +   +E+  LF  M    +  D VS    +  C+        
Sbjct: 169 VPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFG 228

Query: 171 -------LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
                  L++   G+++H +TI+    + L + NS+LD Y ++G +D A  IF  +P   
Sbjct: 229 LHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVS 288

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283
             SWN +I GYG   +   AI   + M+  G   D ++Y+ +L AC   G +E G++ FD
Sbjct: 289 VVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFD 348

Query: 284 EMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPD----ANIWGALLGAC 336
            M +    P+   +  ++    +    ++AVKL + +    V PD    A I  +L G  
Sbjct: 349 GMSS----PSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMM 404

Query: 337 RIYGNVELGAWAAEHLFMLKPQHCGYYIL--LSNMYAEAGKWDEASKV 382
            + G  ++ A + + +F         Y+   L  MY++ GK + A ++
Sbjct: 405 LLEGGRQVHAVSQKAVF-----RTDIYLASGLIGMYSKCGKVEMAKRI 447



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 159/333 (47%), Gaps = 35/333 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+     A  +F N+ E ++VSWN M+A + Q     KA++ ++ M  H   P+ +T
Sbjct: 267 MYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEIT 326

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             N+L AC +   +  G+++          FD   + +L+                    
Sbjct: 327 YVNMLVACIKSGDIEAGRQM----------FDGMSSPSLS-------------------- 356

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
               S+N ++ GYSQ  +  E++ LF EM+   +  D  +    +S+ A +  ++ G+++
Sbjct: 357 ----SWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQV 412

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H V+ +    T +++A+ ++  Y++ G++++A +IFD +   D   WN+++ G  +    
Sbjct: 413 HAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLD 472

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A   F+ MRE G+     SY  +L+ C+    + +G++   ++  +         + +
Sbjct: 473 KEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSAL 532

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +D+  + G + DA + + ++ +  +   W  ++
Sbjct: 533 IDMYSKCGDV-DAARWVFDMMLGKNTVTWNEMI 564



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 130/237 (54%), Gaps = 9/237 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  +   A  +F  IAE +IV WN+M+A  + N L+ +A    ++M     FP+  +
Sbjct: 434 MYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFS 493

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
              VL  CA+   L  G+++H++I R+G   D F+ +AL DMY+KCG ++ A+ VF++  
Sbjct: 494 YATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMML 553

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ V++N +I GY+Q     E++ L+ +M   G K D ++F+  ++AC++   +  G +
Sbjct: 554 GKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIK 613

Query: 180 IHGVTIRKH----LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
           I     ++H    L  H      I+D   R+GR+  A  + D +P K D   W  L+
Sbjct: 614 IFNSMQQEHGVEPLVDHY---TCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLL 667



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 148/309 (47%), Gaps = 21/309 (6%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L ++L  C        GK IHA ++R  L+ D FL+N L + YAKC  ++ ++ +F+ + 
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFMGAISACANLAAIKQG 177
            RD  ++N ++  Y + S+  ++  LF+EM  R +   + ++S +    AC  L  ++ G
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVECG 127

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           +  HG++I+  L  +++V N++L  Y +   I  A + F  +P  +  S+  ++ G    
Sbjct: 128 RRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADS 187

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
            +V+ A  LF  M  + +  D VS  ++L  CS GG  E G    +++ +  V   ++H 
Sbjct: 188 DQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHC 247

Query: 298 AC--------------MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
                           ++D+  + G M+ A  +  N+P E     W  ++     YG   
Sbjct: 248 LTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMP-EVSVVSWNVMIAG---YGQKS 303

Query: 344 LGAWAAEHL 352
             + A E+L
Sbjct: 304 QSSKAIEYL 312


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 158/454 (34%), Positives = 254/454 (55%), Gaps = 40/454 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  R   A  +F  +  ++ VSWN+++  + QN    +AL++  EM      P+ VT
Sbjct: 195 MYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVT 254

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNVF--- 116
           L +V+ ACA    ++ G++IHAR+++      DL L NAL DMYAKC  +N A+ +F   
Sbjct: 255 LASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMM 314

Query: 117 -----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
                                        N+  +D +++N LI G +Q  +  E+L LF 
Sbjct: 315 PIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFR 374

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH------THLFVANSILD 201
            ++   +     +F   ++ACANLA ++ G++ H   ++          + +FV NS++D
Sbjct: 375 LLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLID 434

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y + G ++   ++F  +  KD  SWN +I+GY   G  + A+ +F  M E G   D V+
Sbjct: 435 MYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVT 494

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
            I +L ACSH GL+++G+ YF  M A   + P + HY CMVDLLGRAG +E+A  LI+ +
Sbjct: 495 MIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEM 554

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
            ++PDA +WG+LL AC+++ N++LG +  + L  + P++ G Y+LLSNMYAE   W    
Sbjct: 555 SMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVV 614

Query: 381 KVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +VR+LM+ R   K PGCSW++ + E+  F+V D+
Sbjct: 615 RVRKLMRQRGVVKQPGCSWIEIQGELNVFMVKDK 648



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 175/354 (49%), Gaps = 38/354 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           + KS    +A ++F  + + +  SWN+M++ F Q+    +AL    +M  H    N  + 
Sbjct: 95  FTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSF 154

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            + L ACA    L+ G +IH+ + R     D+++ +AL DMY+KCG +  AQ+VF+ ++ 
Sbjct: 155 GSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTV 214

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R  VS+N LI  Y Q     E+L +F EM   G++ D V+    +SACA ++AIK+G++I
Sbjct: 215 RSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQI 274

Query: 181 HGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           H   ++       L + N++LD Y +  RI+ A  IFD +P++   S  +++ GY    +
Sbjct: 275 HARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASK 334

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           V  A  +F  M    +  D +++ A++  C+  G  E+    F  ++ +SV PT  HY  
Sbjct: 335 VKVARYMFSNM----MVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPT--HYT- 387

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
                                        +G LL AC    +++LG  A  H+ 
Sbjct: 388 -----------------------------FGNLLNACANLADLQLGRQAHSHVL 412



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 147/301 (48%), Gaps = 33/301 (10%)

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
           F +S   + +L  CAR    R    +HA II+     + F+ N L D+Y KCGC+++A+ 
Sbjct: 16  FLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARK 75

Query: 115 VFNISFR--------------------------------DEVSYNILIVGYSQTSDCSES 142
           +F+                                    D+ S+N +I G+ Q     E+
Sbjct: 76  LFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEA 135

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
           L  F++M   G   +  SF  A+SACA L  +K G +IH +  R +  + +++ ++++D 
Sbjct: 136 LVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDM 195

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y++ GR++ A  +FD + V+   SWN+LI  Y   G VD A+ +F  M + GV  D V+ 
Sbjct: 196 YSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTL 255

Query: 263 IAILTACSHGGLVEKGKKYFDE-MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
            ++++AC+    +++G++     ++ D  +   +    ++D+  +   + +A  +   +P
Sbjct: 256 ASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMP 315

Query: 322 V 322
           +
Sbjct: 316 I 316


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 155/452 (34%), Positives = 259/452 (57%), Gaps = 39/452 (8%)

Query: 2   YAKSSRPAEASYLFHN--IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNS 58
           Y ++    +A  LF    +  K+ +SWN+M++ +A N L  +AL + R++ +      +S
Sbjct: 218 YCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADS 277

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            TL +VL ACA    LR GKE+HA+ + +GL+++ F+  AL +MY+KC  L  AQ  F+ 
Sbjct: 278 FTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDG 337

Query: 118 ISFRDEVSYNILIVGYS-----------------------------------QTSDCSES 142
           ++ RD  ++N+LI GY+                                   +      +
Sbjct: 338 VTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELA 397

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
           L LF+EM+   ++ D+ +    + ACA LA I +GK++H  +IR+     + +  +++D 
Sbjct: 398 LRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDM 457

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y + G I  A ++++ +   +  S N ++  Y M G  D  I LF  M  +G   D V++
Sbjct: 458 YAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTF 517

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
           +++L++C H G VE G ++FD M   +V P+  HY C+VDLL RAG +++A +L+K +P 
Sbjct: 518 LSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPR 577

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382
           +PD+ +WGALLG C I+GNVELG  AAE L  L+P + G Y+LL+N+YA AG+W +  + 
Sbjct: 578 KPDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRT 637

Query: 383 RELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           R+++K R   K+PGCSW++ R+++  F+  D+
Sbjct: 638 RQMIKDRGMHKSPGCSWIEDREDIHVFLSCDK 669



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 155/309 (50%), Gaps = 17/309 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +     +A+ +F  + ++N+ SW A+++    +    +AL L  ++ + +       
Sbjct: 103 MYGRFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFV 162

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK----GLNFDLFLT---------NALTDMYAKCG 107
              VL  C     L  G+++H  +I++    G    +F           N +   Y + G
Sbjct: 163 FPVVLKLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENG 222

Query: 108 CLNLAQNVFN---ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVSFMG 163
            +  A+ +F+   +  +D +S+N +I GY+      E+LS+F ++ +  G++ D  +   
Sbjct: 223 NVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGS 282

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
            ++ACA++A++++GKE+H   + + LH + FV  ++++ Y++   +  A   FD +  +D
Sbjct: 283 VLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERD 342

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283
           +A+WN LI GY    +++   NL + M+ DG   +  ++  I++     G  E   + F 
Sbjct: 343 TATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFT 402

Query: 284 EMQADSVKP 292
           EMQ  S++P
Sbjct: 403 EMQTSSLRP 411



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 140/294 (47%), Gaps = 21/294 (7%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           +S T  ++L +C     L  GK++HA  ++ G +   F+   L  MY + GCL+ A  VF
Sbjct: 61  DSSTYASLLESCRT---LNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVF 117

Query: 117 -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
             +  R+  S+  ++  +       E+LSLF +++L  +  +   F   +  C  L  ++
Sbjct: 118 VKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLE 177

Query: 176 QGKEIHGVTIRKHLH-------------THLFVANSILDFYTRSGRIDLANKIFDCLPV- 221
            G+++HGV I++                 ++   N+++  Y  +G ++ A ++FD + + 
Sbjct: 178 LGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELV 237

Query: 222 -KDSASWNTLILGYGMLGEVDTAINLF-EAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
            KD+ SWN++I GY      D A+++F + + E+G+  D  +  ++L AC+    + +GK
Sbjct: 238 GKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGK 297

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +   +     +         +V++  +   ++ A +L  +   E D   W  L+
Sbjct: 298 EVHAQAVVRGLHWNTFVGGALVEMYSKCEDLK-AAQLAFDGVTERDTATWNVLI 350



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 109/241 (45%), Gaps = 24/241 (9%)

Query: 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
           + + LL  + D  ++   + +C  L     GK++H  T++   H H FV   +L  Y R 
Sbjct: 51  THLSLLDKQIDSSTYASLLESCRTL---NLGKQVHAHTLKTGFHGHEFVETKLLQMYGRF 107

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           G +D AN +F  +P ++  SW  ++  +   G  + A++LFE ++ D +G +   +  +L
Sbjct: 108 GCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVL 167

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
             C    ++E G+              ++H      ++ R   M  A+K+     V+   
Sbjct: 168 KLCGGLRVLELGR--------------QLHGV----VIKRCADMGSALKIFSGFSVKNVV 209

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA-SKVREL 385
           +    ++G C   GNVE      + + ++      +  ++S  YA+   +DEA S  R+L
Sbjct: 210 SYNTMIVGYCE-NGNVEKAKELFDQMELVGKDTISWNSMISG-YADNLLFDEALSMFRDL 267

Query: 386 M 386
           +
Sbjct: 268 L 268



 Score = 42.7 bits (99), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 51/112 (45%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +++ I+  N+VS NAM+  +A +    + + L R M  +   P+ VT
Sbjct: 457 MYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVT 516

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
             +VL +C     +  G E    +    +   L     + D+ ++ G L+ A
Sbjct: 517 FLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEA 568


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 145/415 (34%), Positives = 251/415 (60%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+    + + L+ ++ +++++SWNA ++      +  + L +   M      PN  T
Sbjct: 459 MYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYT 518

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L +C+    +  G+++HA II+  L+ + F+  AL DMYAKC  L  A   FN +S
Sbjct: 519 FISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLS 578

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD  ++ ++I  Y+QT+   ++L+ F +M+  G+K +  +  G +S C++LA+++ G++
Sbjct: 579 VRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQ 638

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H +  +    + +FV ++++D Y + G ++ A  +F+ L  +D+ +WNT+I GY   G+
Sbjct: 639 LHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQ 698

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A+  F  M ++G+  D V++  IL+ACSH GLVE+GK++F+ M  D  + PT  H A
Sbjct: 699 GNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCA 758

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGR G  ++    I+ + +  +A IW  +LGA +++ N+ LG  AA  LF L+P+
Sbjct: 759 CMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPE 818

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               YILLSN++A  G+WD+  +VR LM S+  KK PGCSWV+   +V  FV +D
Sbjct: 819 EESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHD 873



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 167/343 (48%), Gaps = 5/343 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK    A A  +   + ++++VSW A++           ++ L +EM      PN  T
Sbjct: 156 VYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFT 215

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L   L AC+    L  GK++HA+  + GL  DLF+ +AL D+YAKCG + LA  +F  + 
Sbjct: 216 LATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP 275

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +++V++N+L+ GY+Q  D +  L LF  M  L +K +  +    +  CAN   +KQG+ 
Sbjct: 276 EQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQV 335

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH + I+     + F+   ++D Y++ G    A  +F  +   D   W+ LI      G+
Sbjct: 336 IHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQ 395

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + +I LF  MR      +  +  ++L+A ++ G ++ G+     +     +        
Sbjct: 396 SEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNA 455

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA---CRIY 339
           +V +  + G + D  KL +++ V+ D   W A L     C +Y
Sbjct: 456 LVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSGLHDCGMY 497



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 2/334 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK      AS +F  + E+N V+WN ++  +AQ       L+L   M   +   N  T
Sbjct: 257 LYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFT 316

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           LT VL  CA    L+ G+ IH+ II+ G   + F+   L DMY+KCG    A  VF  I 
Sbjct: 317 LTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK 376

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V ++ LI    Q     ES+ LF  MRL     +  +    +SA  N   ++ G+ 
Sbjct: 377 KPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQS 436

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH    +    T + V+N+++  Y ++G +    K+++ +  +D  SWN  + G    G 
Sbjct: 437 IHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGM 496

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D  + +F  M E+G   +  ++I+IL +CS    V  G++    +  + +         
Sbjct: 497 YDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTA 556

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           ++D+  +   +EDA      L V  D   W  ++
Sbjct: 557 LIDMYAKCMYLEDADVAFNRLSVR-DLFTWTVII 589



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 141/283 (49%), Gaps = 2/283 (0%)

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
           +++L  CA    L   K IH  I++  +N D  L  +L ++YAKC     A+ V   +  
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VS+  LI G       ++S+ LF EM+  G+  +  +    + AC+   A+  GK++
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQM 235

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H    +  L   LFV ++++D Y + G I+LA+K+F  +P ++  +WN L+ GY   G+V
Sbjct: 236 HAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDV 295

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
              + LF +M E  V  +  +   +L  C++   +++G+     +     +  E     +
Sbjct: 296 TGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGL 355

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           VD+  + GL  DA+ + K +  +PD  +W AL+      G  E
Sbjct: 356 VDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALITCLDQQGQSE 397


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 157/411 (38%), Positives = 246/411 (59%), Gaps = 6/411 (1%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +A  LF  I  K++VSWNAM++ + Q+    +A+    EM   N  PN  T+  VL AC 
Sbjct: 215 DARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACG 274

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
                  GK I + +   G   +L LTNAL DMY KCG  ++A+ +F+ I  +D +S+N 
Sbjct: 275 HTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNT 334

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +I GYS  S   E+L+LF  M    +K + V+F+G + ACA L A+  GK +H   I K+
Sbjct: 335 MIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAY-IDKN 393

Query: 189 LH--THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
           L   ++  +  S++D Y + G I+ A ++F  +  ++ ASWN ++ G+ M G  + A+ L
Sbjct: 394 LRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALAL 453

Query: 247 FEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLL 304
           F  M   G+   D ++++ +L+AC+  GLV+ G +YF  M  D  + P   HY CM+DLL
Sbjct: 454 FSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLL 513

Query: 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364
            RA   E+A  L+KN+ +EPD  IWG+LL AC+ +G VE G + AE LF L+P++ G ++
Sbjct: 514 ARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFV 573

Query: 365 LLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           LLSN+YA AG+WD+ +++R  +  +  KK PGC+ ++   +V +F+V D+ 
Sbjct: 574 LLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKF 624



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 171/359 (47%), Gaps = 38/359 (10%)

Query: 20  EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79
           + N+  WN+++  ++ +   L +L L   M  +   PNS T   +  +C +      GK+
Sbjct: 93  KHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQ 152

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------------- 117
           +HA  ++  L+F+  +  ++  MYA  G ++ A+ VF+                      
Sbjct: 153 LHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGC 212

Query: 118 ----------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
                     I  +D VS+N +I GY Q+    E++  F EM+   +  +  + +  +SA
Sbjct: 213 LDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSA 272

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C +  + + GK I          ++L + N+++D Y + G  D+A ++FD +  KD  SW
Sbjct: 273 CGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISW 332

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK---KYFDE 284
           NT+I GY  L   + A+ LFE M    V  + V+++ IL AC+  G ++ GK    Y D+
Sbjct: 333 NTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDK 392

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
              +S   +   +  ++D+  + G +E A ++ +++     A+ W A+L    ++G+ E
Sbjct: 393 NLRNSSNASL--WTSLIDMYAKCGCIEAAERVFRSMHSRNLAS-WNAMLSGFAMHGHAE 448



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 134/274 (48%), Gaps = 13/274 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  LF  I EK+++SWN M+  ++   L  +AL L   M   N  PN VT
Sbjct: 307 MYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVT 366

Query: 61  LTNVLPACARGHFLRPGKEIHARI---IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF- 116
              +L ACA    L  GK +HA I   +R   N  L+   +L DMYAKCGC+  A+ VF 
Sbjct: 367 FLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLW--TSLIDMYAKCGCIEAAERVFR 424

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM-KHDVVSFMGAISACANLAAIK 175
           ++  R+  S+N ++ G++       +L+LFSEM   G+ + D ++F+G +SAC     + 
Sbjct: 425 SMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVD 484

Query: 176 QGKEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILG 233
            G +     I+ + +   L     ++D   R+ + + A  +   + ++ D A W +L+  
Sbjct: 485 LGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSA 544

Query: 234 YGMLGEVD----TAINLFEAMREDGVGYDPVSYI 263
               G V+     A  LF+   E+   +  +S I
Sbjct: 545 CKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNI 578



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 168/404 (41%), Gaps = 84/404 (20%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA--KCGCLNLAQNVFNISF 120
           N+L  C     +   K+IH+ II+ GLN  +F+ + L    A    G L+ A ++F  + 
Sbjct: 33  NLLEKCKN---INTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQ 89

Query: 121 RDE----VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
           +        +N LI GYS +S    SL LFS M   G++ +  +F     +C    A  +
Sbjct: 90  QHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHE 149

Query: 177 GKEIHGVTIR------KHLHT---HLFVANSILDF----------------------YTR 205
           GK++H   ++       H+HT   H++ +   +DF                      Y  
Sbjct: 150 GKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVS 209

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
            G +D A ++FD +PVKD  SWN +I GY   G  + AI  F  M+E  V  +  + + +
Sbjct: 210 QGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVV 269

Query: 266 LTACSHGGLVEKGK-----------------------------------KYFDEMQADSV 290
           L+AC H    E GK                                   + FD ++   V
Sbjct: 270 LSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDV 329

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAW 347
               + +  M+       L E+A+ L + +    V+P+   +  +L AC   G ++LG W
Sbjct: 330 ----ISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKW 385

Query: 348 AAEHL--FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
              ++   +    +   +  L +MYA+ G  + A +V   M SR
Sbjct: 386 VHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSR 429


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 158/421 (37%), Positives = 241/421 (57%), Gaps = 8/421 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y       +A  LF  I  K++VSWNAM+A + Q+    +AL     M   +  PN  T+
Sbjct: 203 YVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTM 262

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            +VL AC     L  GK I + +  +G   +L L NAL DMY+KCG +  A+ +F+ +  
Sbjct: 263 VSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMED 322

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D + +N +I GY   S   E+L LF  M    +  + V+F+  + ACA+L A+  GK +
Sbjct: 323 KDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWV 382

Query: 181 HGVTIRKHLHTHLFVAN-----SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           H   I K+L     V N     SI+  Y + G +++A ++F  +  +  ASWN +I G  
Sbjct: 383 HAY-IDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLA 441

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
           M G  + A+ LFE M  +G   D ++++ +L+AC+  G VE G +YF  M  D  + P  
Sbjct: 442 MNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKL 501

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HY CM+DLL R+G  ++A  L+ N+ +EPD  IWG+LL ACRI+G VE G + AE LF 
Sbjct: 502 QHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFE 561

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           L+P++ G Y+LLSN+YA AG+WD+ +K+R  +  +  KK PGC+ ++    V +F+V D+
Sbjct: 562 LEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDK 621

Query: 415 M 415
            
Sbjct: 622 F 622



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 204/463 (44%), Gaps = 84/463 (18%)

Query: 14  LFHNIAEK--NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARG 71
           LFH+I  +  NI  WN ++   +       +L L  +M     +PNS T  ++  +CA+ 
Sbjct: 81  LFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKS 140

Query: 72  HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-------ISF---- 120
                 K++HA  ++  L+    +  +L  MY++ G L  A+ VF+       +SF    
Sbjct: 141 KATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALI 200

Query: 121 ---------------------RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
                                +D VS+N +I GY Q+    E+L+ F+ M+   +  +  
Sbjct: 201 TGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQS 260

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           + +  +SAC +L +++ GK I      +    +L + N+++D Y++ G I  A K+FD +
Sbjct: 261 TMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGM 320

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
             KD   WNT+I GY  L   + A+ LFE M  + V  + V+++A+L AC+  G ++ GK
Sbjct: 321 EDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGK 380

Query: 280 ---KYFDE---------------------MQADSVKPTEM-----------HYACMVDLL 304
               Y D+                      +   V+  E             +  M+  L
Sbjct: 381 WVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGL 440

Query: 305 GRAGLMEDAVKLIK---NLPVEPDANIWGALLGACRIYGNVELG-----AWAAEHLFMLK 356
              G  E A+ L +   N   +PD   +  +L AC   G VELG     +   ++    K
Sbjct: 441 AMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPK 500

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSW 399
            QH G  I   ++ A +GK+DEA   + LM + E + + G  W
Sbjct: 501 LQHYGCMI---DLLARSGKFDEA---KVLMGNMEMEPD-GAIW 536



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 131/274 (47%), Gaps = 11/274 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  LF  + +K+++ WN M+  +    L  +AL L   M   N  PN VT
Sbjct: 303 MYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVT 362

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK----GLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
              VLPACA    L  GK +HA I +     G   ++ L  ++  MYAKCGC+ +A+ VF
Sbjct: 363 FLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVF 422

Query: 117 -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
            ++  R   S+N +I G +       +L LF EM   G + D ++F+G +SAC     ++
Sbjct: 423 RSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVE 482

Query: 176 QGKEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILG 233
            G        + + +   L     ++D   RSG+ D A  +   + ++ D A W +L+  
Sbjct: 483 LGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNA 542

Query: 234 YGMLGEVD----TAINLFEAMREDGVGYDPVSYI 263
             + G+V+     A  LFE   E+   Y  +S I
Sbjct: 543 CRIHGQVEFGEYVAERLFELEPENSGAYVLLSNI 576



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 37/294 (12%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGC--LNLAQNVFNISFRDEVS---YNILIVG 132
           K+IH+ II+ GL+  LF  + L +  A      L+ A ++F+       +   +N LI  
Sbjct: 42  KQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRA 101

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           +S T   + SL LFS+M   G+  +  +F     +CA   A  + K++H   ++  LH H
Sbjct: 102 HSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLH 161

Query: 193 LFVANSILDFYTR-------------------------------SGRIDLANKIFDCLPV 221
             V  S++  Y++                                G +D A ++FD +P 
Sbjct: 162 PHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPA 221

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
           KD  SWN +I GY   G  + A+  F  M+E  V  +  + +++L+AC H   +E GK  
Sbjct: 222 KDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWI 281

Query: 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
              ++             +VD+  + G +  A KL   +  + D  +W  ++G 
Sbjct: 282 GSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGME-DKDVILWNTMIGG 334


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 154/421 (36%), Positives = 253/421 (60%), Gaps = 10/421 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  R  +A  +F  +  +++VSWN+++A + QN     AL+  + M +    P+ +T
Sbjct: 266 MYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLT 325

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           + ++    ++    R  + I   +IR+  L+ D+ + NAL +MYAK G +N A  VF+ +
Sbjct: 326 VVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQL 385

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGA----ISACANLAAI 174
             +D +S+N L+ GY+Q    SE++  ++ M       D +   G     I A +++ A+
Sbjct: 386 PRKDTISWNTLVTGYTQNGLASEAIDAYNMMEEC---RDTIPNQGTWVSIIPAYSHVGAL 442

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           +QG +IH   I+  L+  +FVA  ++D Y + GR++ A  +F  +P   S  WN +I   
Sbjct: 443 QQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASL 502

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
           G+ G  + A+ LF+ M  + V  D ++++++L+ACSH GLV++G+K FD MQ +  +KP+
Sbjct: 503 GIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPS 562

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY CMVDLLGRAG +E A +L++N+P++PDA+IWGALL AC+IYGN ELG  A++ L 
Sbjct: 563 LKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLL 622

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            +  ++ GYY+LLSN+YA   KW+   KVR L + R  +K PG S V    + + F   +
Sbjct: 623 EVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGN 682

Query: 414 R 414
           +
Sbjct: 683 Q 683



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/407 (29%), Positives = 220/407 (54%), Gaps = 13/407 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y++      A  +F ++  K++ SWNAM++ F QN     AL ++  M       +++T
Sbjct: 165 LYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTIT 224

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + ++LP CA+   +  G  IH  +++ GL+ D+F++NAL +MY+K G L  AQ VF+ + 
Sbjct: 225 VASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQME 284

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N +I  Y Q +D S +L  F  M+L G++ D+++ +   S  + L+  +  + 
Sbjct: 285 VRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRS 344

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           I G  IR+  L   + + N++++ Y + G ++ A+ +FD LP KD+ SWNTL+ GY   G
Sbjct: 345 ILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNG 404

Query: 239 EVDTAINLFEAMRE--DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
               AI+ +  M E  D +  +  ++++I+ A SH G +++G K   ++  +S+      
Sbjct: 405 LASEAIDAYNMMEECRDTIP-NQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFV 463

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM-- 354
             C++DL G+ G +EDA+ L   +P +     W A++ +  I+G  E      + +    
Sbjct: 464 ATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIHGRGEEALQLFKDMLAER 522

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS----REAKKNPGC 397
           +K  H  +  LLS   + +G  DE  K  ++M+     + + K+ GC
Sbjct: 523 VKADHITFVSLLSAC-SHSGLVDEGQKCFDIMQKEYGIKPSLKHYGC 568



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 140/262 (53%), Gaps = 8/262 (3%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH----NEFPNSVTLTNVLPACAR 70
           F  I +KNI SWN++++ + +     +A+  V ++       +  P+  T   +L AC  
Sbjct: 77  FDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS 136

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
              L  GK++H  + + G   D+F+  +L  +Y++ G L++A  VF ++  +D  S+N +
Sbjct: 137 ---LVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAM 193

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I G+ Q  + + +L + + M+  G+K D ++    +  CA    +  G  IH   ++  L
Sbjct: 194 ISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGL 253

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            + +FV+N++++ Y++ GR+  A  +FD + V+D  SWN++I  Y    +  TA+  F+ 
Sbjct: 254 DSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKG 313

Query: 250 MREDGVGYDPVSYIAILTACSH 271
           M+  G+  D ++ +++ +  S 
Sbjct: 314 MQLGGIRPDLLTVVSLTSIFSQ 335



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 130/263 (49%), Gaps = 9/263 (3%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           K++HA ++  G + ++ L+  L ++Y   G ++L+++ F+ I  ++  S+N +I  Y + 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 137 SDCSESLS----LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
               E+++    LFS      ++ D  +F   + AC +L     GK++H    +      
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLV---DGKKVHCCVFKMGFEDD 155

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +FVA S++  Y+R G +D+A+K+F  +PVKD  SWN +I G+   G    A+ +   M+ 
Sbjct: 156 VFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKG 215

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
           +GV  D ++  +IL  C+    V  G      +    +         ++++  + G ++D
Sbjct: 216 EGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQD 275

Query: 313 AVKLIKNLPVEPDANIWGALLGA 335
           A  +   + V  D   W +++ A
Sbjct: 276 AQMVFDQMEVR-DLVSWNSIIAA 297



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 12/187 (6%)

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
           H    F    ++C N+ A K+   +H + +      ++ ++  +++ Y   G I L+   
Sbjct: 20  HKDADFNALFNSCVNVNATKK---LHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRST 76

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAIN----LFEAMREDGVGYDPVSYIAILTACSH 271
           FD +  K+  SWN++I  Y   G+   A+N    LF       +  D  ++  IL AC  
Sbjct: 77  FDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV- 135

Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
             LV+ GKK    +     +      A +V L  R G+++ A K+  ++PV+ D   W A
Sbjct: 136 -SLVD-GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVK-DVGSWNA 192

Query: 332 LL-GACR 337
           ++ G C+
Sbjct: 193 MISGFCQ 199


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 153/414 (36%), Positives = 250/414 (60%), Gaps = 2/414 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y++S     A  LF  + +++IVSWNAM++ +AQN    K   + + M      PN +TL
Sbjct: 172 YSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITL 231

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL  CA+   L  G  I      K L  ++ ++ A+ +MY KCG ++  + VF+ ++ 
Sbjct: 232 ATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMAR 291

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD V+++ +I GY+Q    +E+L LF  M+   +K + V+ +  +SACA L +++ G+ I
Sbjct: 292 RDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERI 351

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
                 + L ++++VA+++L  Y++ G I  A +IFD LP +D+ +WN++I+G  + G  
Sbjct: 352 GSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFA 411

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
           + AI L+  M+E  V  + ++++ ++TAC+H G VE G ++F  M++D ++ P   H+AC
Sbjct: 412 EDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFAC 471

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDL  R+G + DA + I  + VEP+  IWG LL A RI+ NVEL   A + L  L+P +
Sbjct: 472 IVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLELEPDN 531

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G Y++LSN+YA AG+W EA KVR+LMK +  +K    SWV+  D V  F+V D
Sbjct: 532 SGNYVILSNIYASAGRWQEALKVRKLMKDKRVQKAAAYSWVEVEDRVHKFLVGD 585



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 174/385 (45%), Gaps = 78/385 (20%)

Query: 34  AQNRLEL--KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF 91
           A +RL L  +AL+    M  +N      T+  +  +CA    +  GK++H+ +IR G + 
Sbjct: 70  AYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHS 129

Query: 92  DLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMR 150
            +F  NAL + YAK   L  A+ +F+ I  +D ++YN LI  YS++ +   +  LF +MR
Sbjct: 130 SVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMR 189

Query: 151 --------------------------LLGMKHDV-----VSFMGAISACANLAAIKQGKE 179
                                        M+ ++     ++    +S CA L  ++ G  
Sbjct: 190 DRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLR 249

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I  +   K+L +++ V+ ++L+ Y + G +D    +FD +  +D  +W+ +I GY   G 
Sbjct: 250 IKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGR 309

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG--------------------- 278
            + A+ LFE M+   +  + V+ +++L+AC+  G VE G                     
Sbjct: 310 SNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASA 369

Query: 279 --------------KKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IKNL 320
                         ++ FD++ Q D+V      +  M+  L   G  EDA+ L   +K +
Sbjct: 370 LLGMYSKCGNIIKARQIFDKLPQRDNVT-----WNSMIMGLAINGFAEDAIALYNRMKEI 424

Query: 321 PVEPDANIWGALLGACRIYGNVELG 345
            V+P+   +  L+ AC   G+VELG
Sbjct: 425 EVKPNNITFVGLMTACTHAGHVELG 449



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 132/234 (56%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +   +F ++A +++V+W+AM+A +AQN    +AL+L   M      PN VT
Sbjct: 272 MYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVT 331

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +VL ACA+   +  G+ I + +  +GL  ++++ +AL  MY+KCG +  A+ +F+ + 
Sbjct: 332 LVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLP 391

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++N +I+G +      ++++L++ M+ + +K + ++F+G ++AC +   ++ G E
Sbjct: 392 QRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLE 451

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
                   H +  ++     I+D + RSGR+  A +    + V+ +   W TL+
Sbjct: 452 FFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLL 505



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 159/322 (49%), Gaps = 17/322 (5%)

Query: 78  KEIHARIIRKGLNFD-LFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           K+I A II K L+   LF+   L   +     +  A+ VF+ I   D+  +   I  YS+
Sbjct: 19  KQIQALIIIKYLSLTPLFIRRLLNASF-----IQYARQVFDQIPHPDQGVHCSFITAYSR 73

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
            S  +E+L  F  M    ++    +      +CA+L AI  GK++H + IR   H+ +F 
Sbjct: 74  LSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFC 133

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            N++++FY +   +  A  IFD + VKD+ ++N LI  Y   GEV  A  LF+ MR+  +
Sbjct: 134 QNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSI 193

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
               VS+ A+++  +  G   KG   F  MQ +  +P E+  A ++ +  + G +E  ++
Sbjct: 194 ----VSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLR 249

Query: 316 LIK---NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372
           + K   N  +  +  +  A+L      G V+ G    +H  M +     +  +++  YA+
Sbjct: 250 IKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDH--MARRDVVTWSAMIAG-YAQ 306

Query: 373 AGKWDEASKVRELMKSREAKKN 394
            G+ +EA ++ E MKS + K N
Sbjct: 307 NGRSNEALELFENMKSAQIKPN 328


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 252/416 (60%), Gaps = 4/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVRE-MPIHNEFPNSV 59
           MYA   +   A ++F  + E++IV+WN+M++ + +N L  + ++L R+ + +  EF + V
Sbjct: 165 MYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEF-DDV 223

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T+ +VL AC R   L  G+ I   I+ KGL  +  LT +L DMYAKCG ++ A+ +F+ +
Sbjct: 224 TMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEM 283

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD V+++ +I GY+Q   C E+L+LF EM+   +  + V+ +  + +CA L A + GK
Sbjct: 284 DKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGK 343

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H    +K +   + +   ++DFY + G ID + ++F  +  K+  +W  LI G    G
Sbjct: 344 WVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNG 403

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
           E   A+  F +M E+ V  + V++I +L+ACSH  LV++G+  F+ M+ D  ++P   HY
Sbjct: 404 EGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHY 463

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVD+LGRAG +E+A + I N+P  P+A +W  LL +CR + N+E+   + EH+  L+P
Sbjct: 464 GCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEP 523

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            H G YILLSN YA  G+ ++A +VR L+K +E KK PGCS ++    V +F   D
Sbjct: 524 AHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSED 579



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 172/321 (53%), Gaps = 2/321 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F++I +    ++N M+   A  R    AL L ++M   +   +  T ++VL AC+R   
Sbjct: 77  IFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKA 136

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           LR G+++HA I++ G   + F+ N L  MYA CG + +A++VF+ +  R  V++N ++ G
Sbjct: 137 LREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSG 196

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y++     E + LF ++  L ++ D V+ +  + AC  LA ++ G+ I    + K L  +
Sbjct: 197 YTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRN 256

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
             +  S++D Y + G++D A K+FD +  +D  +W+ +I GY        A+NLF  M++
Sbjct: 257 NTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQK 316

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
             V  + V+ +++L +C+  G  E GK     ++   +K T      ++D   + G ++ 
Sbjct: 317 GNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDR 376

Query: 313 AVKLIKNLPVEPDANIWGALL 333
           +V++ K +  + +   W AL+
Sbjct: 377 SVEVFKEMSFK-NVFTWTALI 396



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 161/349 (46%), Gaps = 50/349 (14%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKC--GCLNLAQNVFN-ISFRDEVSYNILIVGYS 134
           +++HA +++     D  +T A+ +  A      ++ A ++FN I   +  +YN++I G +
Sbjct: 38  QQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLA 97

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
                  +L LF +M    ++HD  +F   + AC+ + A+++G+++H + ++    ++ F
Sbjct: 98  FKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEF 157

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           V N+++  Y   G+I +A  +FD +P +   +WN+++ GY   G  D  + LF  + E  
Sbjct: 158 VENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELR 217

Query: 255 VGYDPVSYIAILTAC-----------------SHG------------------GLVEKGK 279
           + +D V+ I++L AC                 S G                  G V+  +
Sbjct: 218 IEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTAR 277

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGAC 336
           K FDEM    V    + ++ M+    +A   ++A+ L   +    V P+     ++L +C
Sbjct: 278 KLFDEMDKRDV----VAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSC 333

Query: 337 RIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDEASKV 382
            + G  E G W   H ++ K +      L   L + YA+ G  D + +V
Sbjct: 334 AMLGAYETGKWV--HFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEV 380


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 153/433 (35%), Positives = 246/433 (56%), Gaps = 33/433 (7%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F+    +++V+WN+M+    +  L ++A+++ +EM      PN +T+  ++ +C++   
Sbjct: 215 VFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQD 274

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVG 132
           L  GKE H  I   GL F + LTNAL DMY KCG L  A+ +F N++ +  VS+  +++G
Sbjct: 275 LNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLG 334

Query: 133 YS-------------------------------QTSDCSESLSLFSEMRLLGMKHDVVSF 161
           Y+                               Q     E+L+LF EM++  ++ D V+ 
Sbjct: 335 YARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTM 394

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           +  +SAC+ L A+  G  IH    R  L   + +  +++D Y + G I  A ++F+ +P 
Sbjct: 395 VNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQ 454

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
           ++  +W  +I G  + G    A++ F  M   G+  D ++++ +L+AC HGGLVE+G+KY
Sbjct: 455 RNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKY 514

Query: 282 FDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           F EM +  +V P   HY+CMVDLLGRAG +E+A +L+KN+P+  DA + GAL  ACR+YG
Sbjct: 515 FSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYG 574

Query: 341 NVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
           NV++G   A  L  + PQ  G Y+LL++MY+EA  W EA   R+LM  +  +K PGCS V
Sbjct: 575 NVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLV 634

Query: 401 QTRDEVQDFVVND 413
           +    V +FVV D
Sbjct: 635 EINGIVHEFVVRD 647



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 165/367 (44%), Gaps = 42/367 (11%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACARGH 72
           + + I E N+ SWNA +  + ++        L + M +     P++ T   +L  C   +
Sbjct: 113 ILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQY 172

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNILIV 131
               G  +   +++ G   D+F+ NA   M   CG L++A +VFN S  RD V++N +I 
Sbjct: 173 SSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMIT 232

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           G  +     E++ ++ EM    ++ + ++ +G IS+C+ +  +  GKE H       L  
Sbjct: 233 GCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEF 292

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            + + N+++D Y + G +  A  +FD +  K   SW T++LGY   G +D A  +   + 
Sbjct: 293 TIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIP 352

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM---------------- 295
           E  V    V + AI++ C      ++    F EMQ  +++P ++                
Sbjct: 353 EKSV----VPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALD 408

Query: 296 ------HY-------------ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
                 HY               +VD+  + G +  A+++ + +P + +   W A++   
Sbjct: 409 VGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIP-QRNCLTWTAVICGL 467

Query: 337 RIYGNVE 343
            ++GN +
Sbjct: 468 ALHGNAQ 474



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 136/263 (51%), Gaps = 7/263 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+      A  + + I EK++V WNA+++   Q +   +AL L  EM I    P+ VT+
Sbjct: 335 YARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTM 394

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            N L AC++   L  G  IH  I R  L+ D+ L  AL DMYAKCG +  A  VF  I  
Sbjct: 395 VNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQ 454

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ +++  +I G +   +  ++LS FS+M  +G+  D ++F+G +SAC +   +++G++ 
Sbjct: 455 RNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKY 514

Query: 181 HG-VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KDSASWNTLILGYGMLG 238
              ++ + ++   L   + ++D   R+G ++ A ++   +P+  D+A    L     + G
Sbjct: 515 FSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYG 574

Query: 239 EVD----TAINLFEAMREDGVGY 257
            V     TA  L E   +D   Y
Sbjct: 575 NVQIGERTAFKLLEIDPQDSGNY 597



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 116/264 (43%), Gaps = 4/264 (1%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL---AQNVFNISFRDEVSYNILIVGYS 134
           K+I A+++  GL  + F  + L    A      L    + ++ I   +  S+N  I GY 
Sbjct: 74  KQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYV 133

Query: 135 QTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           ++ D      L+  M L G +K D  ++   +  C    +   G  + G  ++      +
Sbjct: 134 ESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDI 193

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
           FV N+ +      G + +A  +F+   V+D  +WN++I G    G    AI +++ M  +
Sbjct: 194 FVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAE 253

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
            V  + ++ I ++++CS    +  GK++   ++   ++ T      ++D+  + G +  A
Sbjct: 254 KVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTA 313

Query: 314 VKLIKNLPVEPDANIWGALLGACR 337
             L  N+  +   +    +LG  R
Sbjct: 314 RVLFDNMAQKTLVSWTTMVLGYAR 337



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK    A A  +F  I ++N ++W A++   A +     AL    +M      P+ +T
Sbjct: 435 MYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEIT 494

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNV 115
              VL AC  G  +  G++  + +  K  ++  L   + + D+  + G L  A+ +
Sbjct: 495 FLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEEL 550


>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 154/408 (37%), Positives = 246/408 (60%), Gaps = 10/408 (2%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  ++EKN+V+W A+++  +Q +   ++L+L  +M      PNS+T  + L AC+    
Sbjct: 213 VFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQA 272

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVG 132
           +R G++IH  + + G++FDL + +AL DMY+KCG L  A  +F  +   DEVS  +++VG
Sbjct: 273 IREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVG 332

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ----GKEIHGVTIRKH 188
            +Q     ES+ +F +M    +K+ VV     ISA   +  I      GK+IH + I+K 
Sbjct: 333 LAQNGFEEESIQVFVKM----VKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKS 388

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
             ++ FV N +++ Y++ G +D + KIF  +P ++S SWN++I  +   G    A+ L+E
Sbjct: 389 FGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYE 448

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            MR +GV    V+++++L AC+H GLVEKG  + + M  D  + P   HYAC+VD++GRA
Sbjct: 449 EMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRA 508

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           GL+ +A K I+ LP +P   +W ALLGAC I+GN E+G +AA  LF+  P+    YILL+
Sbjct: 509 GLLNEAKKFIERLPEKPGILVWQALLGACSIHGNSEMGKYAANQLFLQAPESPAPYILLA 568

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           N+Y+  GKW E ++  + MK     K  G SW++   ++  FVV DRM
Sbjct: 569 NIYSSEGKWKERARTIKKMKDMGVTKETGISWIEIEKQIHSFVVEDRM 616



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 180/345 (52%), Gaps = 7/345 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN---RLELKALQLVREMPIHNEFPN 57
           MY++     +A+ +F ++  K+ +SWN+ ++    N    +  +  + + E  I+ +F +
Sbjct: 98  MYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIY-QF-D 155

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             TLT VL AC +  F    K IH+ +   G   ++ + NAL   Y +CGC +  + VF+
Sbjct: 156 QATLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFD 215

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +S ++ V++  +I G SQ     ESL LF +MR   +  + ++++ ++ AC+ L AI++
Sbjct: 216 EMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIRE 275

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G++IHG+  +  +H  L + ++++D Y++ G ++ A KIF+     D  S   +++G   
Sbjct: 276 GRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQ 335

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G  + +I +F  M ++GV  DP    AIL        +  GK+    +   S       
Sbjct: 336 NGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFV 395

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
              ++++  + G ++D++K+   +P + ++  W +++ A   +GN
Sbjct: 396 NNGLINMYSKCGDLDDSIKIFCWMP-QRNSVSWNSMIAAFARHGN 439



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 161/385 (41%), Gaps = 53/385 (13%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRK-----GLNFD-----LFLTNALTDMYAKC 106
           N V ++ +L  C R  +L  G  +HA II+      G N D     + + N+L  MY++C
Sbjct: 43  NQVDISFLLSLCGREGYLHLGSSLHASIIKNFGFLDGNNRDNLRNVIVVWNSLLSMYSRC 102

Query: 107 GCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM-KHDVVSFMGA 164
           G L  A  VF+ +  +D +S+N  I G     D      +F ++   G+ + D  +    
Sbjct: 103 GELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTV 162

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           ++AC         K IH +         + V N+++  Y R G      ++FD +  K+ 
Sbjct: 163 LTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNV 222

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            +W  +I G       + ++ LF  MR+  V  + ++Y++ L ACS    + +G++    
Sbjct: 223 VTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGL 282

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDA------------------------------- 313
           +    V       + ++D+  + G +EDA                               
Sbjct: 283 VWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEES 342

Query: 314 ----VKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---L 366
               VK++KN  V  D N+  A+LG   I  ++ LG     H  ++K      Y +   L
Sbjct: 343 IQVFVKMVKN-GVVIDPNMISAILGVFGIDTSLALGKQI--HSLIIKKSFGSNYFVNNGL 399

Query: 367 SNMYAEAGKWDEASKVRELMKSREA 391
            NMY++ G  D++ K+   M  R +
Sbjct: 400 INMYSKCGDLDDSIKIFCWMPQRNS 424



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 121/240 (50%), Gaps = 15/240 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +F +  E + VS   ++   AQN  E +++Q+  +M  +    +   
Sbjct: 301 MYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNM 360

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++ +L        L  GK+IH+ II+K    + F+ N L +MY+KCG L+ +  +F  + 
Sbjct: 361 ISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMP 420

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
            R+ VS+N +I  +++  + S +L L+ EMRL G+    V+F+  + ACA++  +++G  
Sbjct: 421 QRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMG 480

Query: 178 -----KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA-SWNTLI 231
                 + +G+  R   +        ++D   R+G ++ A K  + LP K     W  L+
Sbjct: 481 FLESMAKDYGIGPRMEHYA------CVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALL 534



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 121/294 (41%), Gaps = 66/294 (22%)

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI----------RKHLHTHLFV 195
           +SE     +    +SF+  +S C     +  G  +H   I          R +L   + V
Sbjct: 34  YSETSKFAINQVDISFL--LSLCGREGYLHLGSSLHASIIKNFGFLDGNNRDNLRNVIVV 91

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            NS+L  Y+R G +  A K+FD +P+KD+ SWN+ I G    G+++    +F+ + E G+
Sbjct: 92  WNSLLSMYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGI 151

Query: 256 -GYDPVSYIAILTACS-----------------------------------HGGLVEKGK 279
             +D  +   +LTAC                                      G    G+
Sbjct: 152 YQFDQATLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGR 211

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IKNLPVEPDANIWGALLGAC 336
           + FDEM   +V    + +  ++  L +    E+++KL   +++ PV+P++  + + L AC
Sbjct: 212 RVFDEMSEKNV----VTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMAC 267

Query: 337 RIYGNVELG------AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
                +  G       W     F L  +       L +MY++ G  ++A K+ E
Sbjct: 268 SGLQAIREGRQIHGLVWKLGVHFDLCIESA-----LMDMYSKCGSLEDAWKIFE 316


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  294 bits (753), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 146/411 (35%), Positives = 245/411 (59%), Gaps = 2/411 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A  +F  + ++N VSWNAM+  +A+N    +AL L + M         V+
Sbjct: 371 VYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVS 430

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +   L AC    FL  G+ +H  ++R GL  ++ + NAL  MY KC   +LA  VF+ + 
Sbjct: 431 VLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELG 490

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           ++  VS+N +I+G +Q     +++ LFS M+L  +K D  + +  I A A+++   Q + 
Sbjct: 491 YKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARW 550

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG +IR HL   ++V  +++D Y + GR+ +A  +F+    +   +WN +I GYG  G 
Sbjct: 551 IHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGS 610

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LFE M+  G   +  +++++L+ACSH GLV++G++YF  M+ D  ++P   HY 
Sbjct: 611 GKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYG 670

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            MVDLLGRAG + +A   I+ +P+EP  +++GA+LGAC+++ NVEL   +A+ +F L+P+
Sbjct: 671 TMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPE 730

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
              Y++LL+N+YA A  W + ++VR  M+ +  +K PG S VQ ++E+  F
Sbjct: 731 EGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTF 781



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/270 (35%), Positives = 160/270 (59%), Gaps = 2/270 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN-EFPNSV 59
           MYAK  RP +A  +F  +  ++ V+WNA+VA +A+N L   A+ +V  M   + E P++V
Sbjct: 269 MYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAV 328

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL +VLPACA    L   +E+HA  +R G +  + ++ A+ D+Y KCG ++ A+ VF+ +
Sbjct: 329 TLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGM 388

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ VS+N +I GY++  D +E+L+LF  M   G+    VS + A+ AC  L  + +G+
Sbjct: 389 QDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGR 448

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H + +R  L +++ V N+++  Y +  R DLA ++FD L  K   SWN +ILG    G
Sbjct: 449 RVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNG 508

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTA 268
             + A+ LF  M+ + V  D  + ++I+ A
Sbjct: 509 SSEDAVRLFSRMQLENVKPDSFTLVSIIPA 538



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 125/233 (53%), Gaps = 2/233 (0%)

Query: 50  PIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL 109
           P     P   T T++L  CA    L  G+ +HA++  +GL+ +     AL +MYAKC   
Sbjct: 217 PASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRP 276

Query: 110 NLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISA 167
             A+ VF+ +  RD V++N L+ GY++      ++ +   M+   G + D V+ +  + A
Sbjct: 277 GDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPA 336

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           CA+  A+   +E+H   +R      + V+ +ILD Y + G +D A K+FD +  ++S SW
Sbjct: 337 CADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSW 396

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
           N +I GY   G+   A+ LF+ M  +GV    VS +A L AC   G +++G++
Sbjct: 397 NAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRR 449


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 250/416 (60%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  +  +++VSWN M+ +  QN  E +AL L+ +M       +  T
Sbjct: 108 MYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFT 167

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +++VL ACA    L   + +HA  I+  ++ ++F+  AL D+YAKCG +  A  VF ++ 
Sbjct: 168 ISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP 227

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  V+++ +  GY Q     ++L+LF +    G+KHD       I ACA LAA+ +GK+
Sbjct: 228 DRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQ 287

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           ++ +  +    +++FVA+S++D Y + G I+ + K+F  +  ++   WN +I G      
Sbjct: 288 MNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHAR 347

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYA 298
               + LFE M++ G+  + V+++++L+AC H GLV KG+KYFD M  +  + P   HY+
Sbjct: 348 SLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYS 407

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD L RAG + +A  LI  LP    A++WG+LL +CR +GN+EL   AA+ LF ++P 
Sbjct: 408 CMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPH 467

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G Y+LLSNMYA  GKWDE +K+R+L+K  + KK  G SW++ +D+V  F+V +R
Sbjct: 468 NSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGER 523



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 140/273 (51%), Gaps = 2/273 (0%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L  CA+   L  GK  HA+I+  GL  DL  +N L +MY+KCG ++ A+ VF+ +  R 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            VS+N +I   +Q  + +E+L L  +M+  G      +    + ACA   A+ + + +H 
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             I+  +  ++FVA ++LD Y + G +  A  +F+ +P +   +W+++  GY      + 
Sbjct: 190 FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ 249

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
           A+ LF    E G+ +D     +++ AC+    + +GK+    +            + ++D
Sbjct: 250 ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLID 309

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +  + G +E++ K+ +++  + +  +W A++  
Sbjct: 310 MYAKCGGIEESYKVFRDVE-KRNVVLWNAMISG 341



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 1/164 (0%)

Query: 159 VSFMGAI-SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
           VSF+  I   CA    + QGK  H   +   L T L  +N +++ Y++ G +D A ++FD
Sbjct: 64  VSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFD 123

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            +P +   SWNT+I      GE + A++L   M+ +G  +   +  ++L AC+    + +
Sbjct: 124 EMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSE 183

Query: 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
            +         ++         ++D+  + GLM+DAV + +++P
Sbjct: 184 CQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP 227


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 161/414 (38%), Positives = 234/414 (56%), Gaps = 55/414 (13%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P+ V+L NVLPACA       GK +H   +R G   DLF+ NAL DMYAKCG ++ A  V
Sbjct: 11  PDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKV 70

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA------- 167
           F+ I  +D VS+N ++ GYSQ     ++L LF +MR   ++ +VVS+   I+A       
Sbjct: 71  FDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLG 130

Query: 168 ---------------------------------------------CANLAAIKQGKEIHG 182
                                                        CA LAA++ G++IH 
Sbjct: 131 CETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHA 190

Query: 183 VTIRKHLHT-HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
             +R H  +  L+VAN ++D Y +SG ID+A  +FD L  K+  SW +L+ GYGM G   
Sbjct: 191 YILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGK 250

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACM 300
            A+ +F+ MR  G+  D V+ + +L ACSH G++++G ++F+ M  +  V P + HYACM
Sbjct: 251 EALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACM 310

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           VDLLGRAG + +A++LI+ + +EP + +W ALL  CRI+ NVELG  AA+ L  L  ++ 
Sbjct: 311 VDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSEND 370

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           G Y LLSN+YA A +W + ++VR LMK+   +K PGCSWVQ +     F V D+
Sbjct: 371 GSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADK 424



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 150/301 (49%), Gaps = 49/301 (16%)

Query: 2   YAKSSRPAEASYLFHNIAEKNI----VSWNAMVANFAQNRLELKALQLVREMPIHNEF-- 55
           Y++  R  +A  LF  + E+NI    VSW+A++A FAQ  L  + L + REM  H E   
Sbjct: 89  YSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQ-HGEAND 147

Query: 56  ----------------PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD---LFLT 96
                           PN  T++  L ACAR   LR G++IHA I+R   +FD   L++ 
Sbjct: 148 ALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRN--HFDSAFLYVA 205

Query: 97  NALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155
           N L DMYAK G +++A+ VF N+  ++ VS+  L+ GY       E+L +F EMR +G++
Sbjct: 206 NCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQ 265

Query: 156 HDVVSFMGAISACANLAAIKQG--------KEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
            D V+ +  + AC++   I QG        KE   +  ++H          ++D   R+G
Sbjct: 266 PDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYAC-------MVDLLGRAG 318

Query: 208 RIDLANKIFDCLPVKDSA-SWNTLILGYGMLGEVD----TAINLFEAMREDGVGYDPVSY 262
           R++ A ++ + + ++ S+  W  L+ G  +   V+     A  L E   E+   Y  +S 
Sbjct: 319 RLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSENDGSYTLLSN 378

Query: 263 I 263
           I
Sbjct: 379 I 379



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 120/242 (49%), Gaps = 21/242 (8%)

Query: 152 LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211
           + M+ DVVS +  + ACA++ A   GK +HG+ +R      LFV N+++D Y + G +D 
Sbjct: 7   IDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDE 66

Query: 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271
           A+K+FD +  KD  SWN ++ GY  +G  + A+ LFE MRE+ +  + VS+ A++ A + 
Sbjct: 67  ASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQ 126

Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
            GL  +    F EMQ          ++ M          +D +       V+P+      
Sbjct: 127 RGLGCETLDVFREMQHGEANDALELFSWM--------FKQDGL-------VKPNCFTISC 171

Query: 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN----MYAEAGKWDEASKVRELMK 387
            L AC     + LG     H ++L+      ++ ++N    MYA++G  D A  V + +K
Sbjct: 172 ALIACARLAALRLGRQI--HAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLK 229

Query: 388 SR 389
            +
Sbjct: 230 QK 231



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS     A ++F N+ +KN VSW +++  +  +    +AL++  EM      P+ VT
Sbjct: 211 MYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVT 270

Query: 61  LTNVLPACARGHFLRPGKE 79
           L  VL AC+    +  G E
Sbjct: 271 LLVVLYACSHSGMIDQGIE 289


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 155/419 (36%), Positives = 244/419 (58%), Gaps = 6/419 (1%)

Query: 1   MYAKSSRPAE---ASYLFHNIAEKNIVSWNAMVANFAQNR-LELKALQLVREMPIHNEFP 56
           MYAK S       A  +F  I + N+ SW AM+  + Q    + +AL L R M + +  P
Sbjct: 315 MYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIP 374

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N  T ++ L ACA    LR G+++    ++ G +    + N+L  MYA+ G ++ A+  F
Sbjct: 375 NHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAF 434

Query: 117 NISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           +I F ++ +SYN +I  Y++  +  E+L LF+E+   GM     +F   +S  A++  I 
Sbjct: 435 DILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIG 494

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           +G++IH   I+  L  +  V N+++  Y+R G I+ A ++F+ +  ++  SW ++I G+ 
Sbjct: 495 KGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFA 554

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
             G    A+ LF  M E+GV  + V+YIA+L+ACSH GLV +G K+F  M  +  V P  
Sbjct: 555 KHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRM 614

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYACMVD+LGR+G + +A++ I ++P + DA +W   LGACR++GN+ELG  AA+ +  
Sbjct: 615 EHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIE 674

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            +P     YILLSN+YA   KWDE S +R+ MK +   K  GCSWV+  ++V  F V D
Sbjct: 675 QEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGD 733



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 167/327 (51%), Gaps = 10/327 (3%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + E+N V+W  M+    Q     +A+ L  EM +    P+  TL+ V+ ACA    
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMEL 286

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC---GCLNLAQNVFNISFRDEV-SYNIL 129
           L  G+++H++ IR GL  D  +   L +MYAKC   G +  A+ +F+      V S+  +
Sbjct: 287 LLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAM 346

Query: 130 IVGYSQTSDC-SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           I GY Q      E+L LF  M L  +  +  +F   + ACANLAA++ G+++    ++  
Sbjct: 347 ITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLG 406

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
             +   VANS++  Y RSGRID A K FD L  K+  S+NT+I  Y      + A+ LF 
Sbjct: 407 FSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFN 466

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            + + G+G    ++ ++L+  +  G + KG++    +    +K  +     ++ +  R G
Sbjct: 467 EIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCG 526

Query: 309 LMEDAVKLIKNLPVEPDANI--WGALL 333
            +E A ++ +++    D N+  W +++
Sbjct: 527 NIESAFQVFEDM---EDRNVISWTSII 550



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 155/323 (47%), Gaps = 8/323 (2%)

Query: 1   MYAKSSRPAEASYLFHNI-AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           +Y+K  +  +A+ +F  + + ++++SW+AMV+ FA N +  +AL    +M  +  +PN  
Sbjct: 110 LYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEY 169

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKC-GCLNLAQNVF- 116
                  AC+   F+  G  I   +++ G L  D+ +   L DM+ K  G L  A  VF 
Sbjct: 170 CFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFE 229

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  R+ V++ ++I    Q     E++ LF EM L G + D  +  G ISACAN+  +  
Sbjct: 230 KMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLL 289

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTR---SGRIDLANKIFDCLPVKDSASWNTLILG 233
           G+++H   IR  L     V   +++ Y +    G +  A KIFD +   +  SW  +I G
Sbjct: 290 GQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITG 349

Query: 234 YGMLGEVD-TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
           Y   G  D  A++LF  M    V  +  ++ + L AC++   +  G++ F          
Sbjct: 350 YVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSS 409

Query: 293 TEMHYACMVDLLGRAGLMEDAVK 315
                  ++ +  R+G ++DA K
Sbjct: 410 VNCVANSLISMYARSGRIDDARK 432



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 162/391 (41%), Gaps = 47/391 (12%)

Query: 41  KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100
           KA+  +  M      P+  T +  L  C R      G  +H ++ +  L  D    N+L 
Sbjct: 49  KAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLI 108

Query: 101 DMYAKCGCLNLAQNVFNI--SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
            +Y+KCG    A ++F +  S RD +S++ ++  ++  +    +L  F +M   G   + 
Sbjct: 109 SLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNE 168

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRK-HLHTHLFVANSILDFYTRSGRIDL--ANKI 215
             F  A  AC+    +  G  I G  ++  +L + + V   ++D + + GR DL  A K+
Sbjct: 169 YCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVK-GRGDLVSAFKV 227

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275
           F+ +P +++ +W  +I      G    AI+LF  M   G   D  +   +++AC++  L+
Sbjct: 228 FEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELL 287

Query: 276 EKGKKYFDEMQADSVK--------PTEMHYACMVD------------------------- 302
             G++   +     +            M+  C VD                         
Sbjct: 288 LLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMI 347

Query: 303 --LLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFML-- 355
              + + G  E+A+ L + +    V P+   + + L AC     + +G     H   L  
Sbjct: 348 TGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGF 407

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
              +C    L+S MYA +G+ D+A K  +++
Sbjct: 408 SSVNCVANSLIS-MYARSGRIDDARKAFDIL 437


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 153/416 (36%), Positives = 243/416 (58%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +      LF ++ ++++VSW  ++ +  Q   E  A++  R M   +  PN  T
Sbjct: 213 MYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFT 272

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V+  CA    +  G+++HA +IR+GL   L + N++  MY+KC  L+LA  VF  +S
Sbjct: 273 FAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLS 332

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S++ +I GY+Q     E+    S MR  G + +  +F   +S C N+A ++QGK+
Sbjct: 333 RRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQ 392

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +   L  +  V +++++ Y++ G I  A+KIFD     +  SW  +I GY   G 
Sbjct: 393 LHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGY 452

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              AI+LF+ + + G+  D V++IA+L ACSH GLV+ G  YF+ + +   + P++ HY 
Sbjct: 453 SQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYG 512

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLL RAG + DA  +I+++P + D  +W  LL ACRI+G+V+ G  AAE +  L P 
Sbjct: 513 CMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPN 572

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               +I L+NMYA  GKW EA++VR++MKS+   K PG SW++ +D V  FV  DR
Sbjct: 573 CAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWIKFKDRVSAFVSGDR 628



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 184/384 (47%), Gaps = 43/384 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +  E   +F  +  +N+VSW A++A   +     +AL    +M I     ++ T
Sbjct: 112 MYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYT 171

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            ++ L ACA    L  G+EIH + ++KG     F+ N L  MY KCG L+    +F +++
Sbjct: 172 FSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMT 231

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  +I+   Q      ++  F  MR   +  +  +F   IS CA L  I+ G++
Sbjct: 232 QRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQ 291

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   IR+ L   L VANSI+  Y++  ++DLA+ +F  L  +D  SW+T+I GY   G 
Sbjct: 292 LHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGC 351

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-------------------- 279
            + A +    MR +G   +  ++ ++L+ C +  ++E+GK                    
Sbjct: 352 GEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSA 411

Query: 280 ---------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP--- 321
                          K FDE + +++    + +  M++     G  ++A+ L K LP   
Sbjct: 412 LINMYSKCGSIKEASKIFDEAEYNNI----VSWTAMINGYAEHGYSQEAIDLFKKLPKVG 467

Query: 322 VEPDANIWGALLGACRIYGNVELG 345
           + PD+  + A+L AC   G V+LG
Sbjct: 468 LRPDSVTFIAVLAACSHAGLVDLG 491



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 196/434 (45%), Gaps = 42/434 (9%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVTLT 62
           K+     A  LF  + +++ +SW  +++ +       +AL L  +M +      +   L+
Sbjct: 13  KTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILS 72

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
             L AC     +  G+ +H   ++      +F+ +AL DMY K G ++    VF  +  R
Sbjct: 73  LALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLR 132

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + VS+  +I G  +     E+L+ FS+M +  +  D  +F  A+ ACA+  A+  G+EIH
Sbjct: 133 NVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIH 192

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
             T++K      FVAN++   Y + G++D   ++F+ +  +D  SW T+I+    +G+ +
Sbjct: 193 CQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEE 252

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK---------YFDEMQ-ADSV- 290
            A+  F  MRE  V  +  ++ A+++ C+  G +E G++           D +  A+S+ 
Sbjct: 253 NAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIM 312

Query: 291 --------------------KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE---PDAN 327
                               +   + ++ M+    + G  E+A   +  +  E   P+  
Sbjct: 313 AMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEF 372

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLK-PQHCGYYILLSNMYAEAGKWDEASKVRELM 386
            + ++L  C     +E G     H+  +   Q+      L NMY++ G   EASK+ +  
Sbjct: 373 AFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFD-- 430

Query: 387 KSREAKKNPGCSWV 400
              EA+ N   SW 
Sbjct: 431 ---EAEYNNIVSWT 441



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 92/236 (38%), Gaps = 48/236 (20%)

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR-EDGV 255
           N +L    ++G ++ A ++FD +  +D  SW T+I GY        A++LF  M  E G+
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 256 GYDPVSYIAILTACS-----------HG------------------------GLVEKGKK 280
             DP      L AC            HG                        G V++G  
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCI 124

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP---DANIWGALLGACR 337
            F EM   +V    + +  ++  L RAG  ++A+    ++ ++    D   + + L AC 
Sbjct: 125 VFKEMPLRNV----VSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACA 180

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDEASKVRELMKSRE 390
             G +  G     H   LK        +   L+ MY + GK D   ++ E M  R+
Sbjct: 181 DSGALNYG--REIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRD 234


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 158/423 (37%), Positives = 252/423 (59%), Gaps = 16/423 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A  LF  I  K++VSWNAM++ +A+     +AL+L ++M   N  P+  T+
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             V+ ACA+   +  G+++H  I   G   +L + NAL D+Y+KCG L  A  +F  + +
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D +S+N LI GY+  +   E+L LF EM   G   + V+ +  + ACA+L AI  G+ I
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 389

Query: 181 H--------GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           H        GVT    L T      S++D Y + G I+ A+++F+ +  K  +SWN +I 
Sbjct: 390 HVYIDKRLKGVTNASSLRT------SLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVK 291
           G+ M G  D + +LF  MR+ G+  D ++++ +L+ACSH G+++ G+  F  M  D  + 
Sbjct: 444 GFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMT 503

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
           P   HY CM+DLLG +GL ++A ++I  + +EPD  IW +LL AC+++GNVELG   AE+
Sbjct: 504 PKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAEN 563

Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           L  ++P++ G Y+LLSN+YA AG+W+E +K R L+  +  KK PGCS ++    V +F++
Sbjct: 564 LIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFII 623

Query: 412 NDR 414
            D+
Sbjct: 624 GDK 626



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 178/365 (48%), Gaps = 37/365 (10%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  I E N++ WN M    A +   + AL+L   M      PNS T   VL +CA+   
Sbjct: 90  VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKA 149

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
            + G++IH  +++ G + DL++  +L  MY + G L  A  VF+                
Sbjct: 150 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKG 209

Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
                           I  +D VS+N +I GY++T +  E+L LF +M    ++ D  + 
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           +  +SACA   +I+ G+++H         ++L + N+++D Y++ G ++ A  +F+ LP 
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-- 279
           KD  SWNTLI GY  +     A+ LF+ M   G   + V+ ++IL AC+H G ++ G+  
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 389

Query: 280 -KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
             Y D+        + +  + ++D+  + G +E A ++  ++ +    + W A++    +
Sbjct: 390 HVYIDKRLKGVTNASSLRTS-LIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAM 447

Query: 339 YGNVE 343
           +G  +
Sbjct: 448 HGRAD 452



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 100/183 (54%), Gaps = 3/183 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K      A  LF  +  K+++SWN ++  +    L  +AL L +EM    E PN VT
Sbjct: 310 LYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 369

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR--KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           + ++LPACA    +  G+ IH  I +  KG+     L  +L DMYAKCG +  A  VFN 
Sbjct: 370 MLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNS 429

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           I  +   S+N +I G++       S  LFS MR +G++ D ++F+G +SAC++   +  G
Sbjct: 430 ILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLG 489

Query: 178 KEI 180
           + I
Sbjct: 490 RHI 492



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 132/291 (45%), Gaps = 36/291 (12%)

Query: 80  IHARIIRKGLNFDLFLTNALTD---MYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQ 135
           IHA++I+ GL+   +  + L +   +      L  A +VF  I   + + +N +  G++ 
Sbjct: 52  IHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHAL 111

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
           +SD   +L L+  M  LG+  +  +F   + +CA   A K+G++IHG  ++      L+V
Sbjct: 112 SSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYV 171

Query: 196 ANSILDFYTRSGR-------------------------------IDLANKIFDCLPVKDS 224
             S++  Y ++GR                               I+ A K+FD +PVKD 
Sbjct: 172 HTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDV 231

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            SWN +I GY   G    A+ LF+ M +  V  D  + + +++AC+  G +E G++    
Sbjct: 232 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLW 291

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +              ++DL  + G +E A  L + LP + D   W  L+G 
Sbjct: 292 IDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DVISWNTLIGG 341


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 157/439 (35%), Positives = 249/439 (56%), Gaps = 37/439 (8%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACARGH 72
           LF  + + +IVSWN+++  +     +++AL+    M   +   P+  TL +VL ACA   
Sbjct: 233 LFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRE 292

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS------------- 119
            L+ GK+IHA I+R  ++    + NAL  MYAK G + +A  +  I+             
Sbjct: 293 SLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSL 352

Query: 120 ---------------------FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
                                 RD V++  +IVGY+Q    S++L LF  M   G K + 
Sbjct: 353 LDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNN 412

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
            +    +S  ++LA++  GK++H V IR    + + V N+++  Y+RSG I  A KIF+ 
Sbjct: 413 YTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNH 472

Query: 219 L-PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
           +   +D+ +W ++IL     G  + AI LFE M    +  D ++Y+ +L+AC+H GLVE+
Sbjct: 473 ICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQ 532

Query: 278 GKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
           GK YF+ M+   +++PT  HYACM+DLLGRAGL+E+A   I+N+P+EPD   WG+LL +C
Sbjct: 533 GKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSC 592

Query: 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPG 396
           R++  V+L   AAE L ++ P + G Y+ L+N  +  GKW++A+KVR+ MK +  KK  G
Sbjct: 593 RVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQG 652

Query: 397 CSWVQTRDEVQDFVVNDRM 415
            SWVQ +++V  F V D +
Sbjct: 653 FSWVQIKNKVHIFGVEDAL 671



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 192/442 (43%), Gaps = 84/442 (19%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           +AK+     A  +F  I + + VSW  M+  +    L   A+     M      P   T 
Sbjct: 89  HAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTF 148

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           TNVL +CA    L  GK++H+ +++ G +  + + N+L +MYAKCG   +A+ VF+ +  
Sbjct: 149 TNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRL 208

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMR----------LLGMKH--------DVVSFM 162
           +D  ++N +I  + Q      +L+LF +M           + G  H        +  SFM
Sbjct: 209 KDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFM 268

Query: 163 --------------GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
                           +SACAN  ++K GK+IH   +R  +     V N+++  Y +SG 
Sbjct: 269 LKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGA 328

Query: 209 IDLANK---------------------------------IFDCLPVKDSASWNTLILGYG 235
           +++A++                                 IFD L  +D  +W  +I+GY 
Sbjct: 329 VEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYA 388

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G +  A+ LF  M  +G   +  +  A+L+  S    ++ GK    ++ A +++  E+
Sbjct: 389 QNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGK----QLHAVAIRLEEV 444

Query: 296 HYA----CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
                   ++ +  R+G ++DA K+  ++    D   W +++ +   +G   LG  A E 
Sbjct: 445 SSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHG---LGNEAIE- 500

Query: 352 LFM------LKPQHCGYYILLS 367
           LF       LKP H  Y  +LS
Sbjct: 501 LFEKMLRINLKPDHITYVGVLS 522



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 17/296 (5%)

Query: 8   PAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPA 67
           PA A  +F ++  +++V+W AM+  +AQN L   AL L R M      PN+ TL  VL  
Sbjct: 364 PARA--IFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSV 421

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--ISFRDEVS 125
            +    L  GK++HA  IR      + + NAL  MY++ G +  A+ +FN   S+RD ++
Sbjct: 422 ISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLT 481

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           +  +I+  +Q    +E++ LF +M  + +K D ++++G +SAC ++  ++QGK      +
Sbjct: 482 WTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSY--FNL 539

Query: 186 RKHLHTHLFVANS---ILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGMLGEVD 241
            K++H     ++    ++D   R+G ++ A      +P++ D  +W +L+        V 
Sbjct: 540 MKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSS----CRVH 595

Query: 242 TAINLFEAMREDGVGYDPV---SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
             ++L +   E  +  DP    +Y+A+    S  G  E   K    M+  +VK  +
Sbjct: 596 KYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQ 651



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 151/343 (44%), Gaps = 69/343 (20%)

Query: 77  GKEIHARIIRKGLNF-DLFLTNALTDMY-------------------------------A 104
           G+ IHARII+ GL +  +FLTN L ++Y                               A
Sbjct: 31  GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90

Query: 105 KCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMG 163
           K G L+ A+ VF+ I   D VS+  +IVGY+       ++  F  M   G+     +F  
Sbjct: 91  KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
            +++CA   A+  GK++H   ++      + VANS+L+ Y + G   +A  +FD + +KD
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKD 210

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283
           +++WNT+I  +    + D A+ LF+ M +     D VS+ +I+T   H G   +  + F 
Sbjct: 211 TSTWNTMISMHMQFCQFDLALALFDQMTDP----DIVSWNSIITGYCHQGYDIRALETFS 266

Query: 284 EMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            M                               +K+  ++PD    G++L AC    +++
Sbjct: 267 FM-------------------------------LKSSSLKPDKFTLGSVLSACANRESLK 295

Query: 344 LGAWAAEHLFMLKPQHCGYY-ILLSNMYAEAGKWDEASKVREL 385
           LG     H+        G     L +MYA++G  + A ++ E+
Sbjct: 296 LGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEI 338



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 75/139 (53%), Gaps = 12/139 (8%)

Query: 167 ACANL--AAIKQ-----GKEIHGVTIRKHL-HTHLFVANSILDFYTRSGRIDLANKIFDC 218
           AC +L  +AIK      G+ IH   I+  L +  +F+ N++L+ Y ++G    A+++FD 
Sbjct: 14  ACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDE 73

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P+K + SWNT++  +   G +D+A  +F+ + +     D VS+  ++   +H GL +  
Sbjct: 74  MPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQP----DSVSWTTMIVGYNHLGLFKSA 129

Query: 279 KKYFDEMQADSVKPTEMHY 297
              F  M +  + PT+  +
Sbjct: 130 VHAFLRMVSSGISPTQFTF 148


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 157/440 (35%), Positives = 245/440 (55%), Gaps = 37/440 (8%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACA 69
           A  LF ++  ++IVSWNAM+A + QN L+ KAL+L   M   +   P+  T+T+VL ACA
Sbjct: 249 AESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACA 308

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------ISF 120
               +R GK++HA I+R  + ++  +TNAL   YAK G +  A+ + +         ISF
Sbjct: 309 NLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISF 368

Query: 121 -------------------------RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155
                                    RD V++  +IVGY Q     E++ LF  M   G +
Sbjct: 369 TALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPE 428

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
            +  +    +S CA+LA +  GK+IH   IR  L     V+N+I+  Y RSG    A ++
Sbjct: 429 PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRM 488

Query: 216 FDCLP-VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL 274
           FD +   K++ +W ++I+     G+ + A+ LFE M   GV  D ++Y+ +L+ACSH G 
Sbjct: 489 FDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGF 548

Query: 275 VEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           V +GK+Y+D+++ +  + P   HYACMVDLL RAGL  +A + I+ +PVEPDA  WG+LL
Sbjct: 549 VNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLL 608

Query: 334 GACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKK 393
            ACR++ N EL   AAE L  + P + G Y  ++N+Y+  G+W +A+++ +  K +  +K
Sbjct: 609 SACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRK 668

Query: 394 NPGCSWVQTRDEVQDFVVND 413
             G SW   R ++  F  +D
Sbjct: 669 ETGFSWTHIRSKIHVFGADD 688



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/492 (24%), Positives = 203/492 (41%), Gaps = 119/492 (24%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+AKS R A+A  +F  + E++ VSW  MV    +     +A++ + +M      P   T
Sbjct: 107 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 166

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---- 116
           LTNVL +CA       G+++H+ +++ GL   + + N++ +MY KCG    A  VF    
Sbjct: 167 LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMP 226

Query: 117 ----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                       ++  R  VS+N +I GY+Q    +++L LFS 
Sbjct: 227 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSR 286

Query: 149 M-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           M     M  D  +    +SACANL  ++ GK++H   +R  +  +  V N+++  Y +SG
Sbjct: 287 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 346

Query: 208 RIDLANKIFD---------------------------------CLPVKDSASWNTLILGY 234
            ++ A +I D                                  +  +D  +W  +I+GY
Sbjct: 347 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY 406

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGK------------- 279
              G  D AI+LF +M     G +P SY   A+L+ C+    ++ GK             
Sbjct: 407 EQNGRNDEAIDLFRSMIT--CGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLER 464

Query: 280 ----------------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317
                                 + FD++     +   + +  M+  L + G  E+AV L 
Sbjct: 465 SSSVSNAIITMYARSGSFPWARRMFDQV---CWRKETITWTSMIVALAQHGQGEEAVGLF 521

Query: 318 KNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-----CGYYILLSNM 369
           + +    VEPD   +  +L AC   G V  G     +   +K +H       +Y  + ++
Sbjct: 522 EEMLRAGVEPDRITYVGVLSACSHAGFVNEG---KRYYDQIKNEHQIAPEMSHYACMVDL 578

Query: 370 YAEAGKWDEASK 381
            A AG + EA +
Sbjct: 579 LARAGLFSEAQE 590



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 4/234 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A  +F  +  +++V+W AM+  + QN    +A+ L R M      PNS TL
Sbjct: 375 YVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTL 434

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL  CA    L  GK+IH R IR  L     ++NA+  MYA+ G    A+ +F+ + +
Sbjct: 435 AAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCW 494

Query: 121 RDE-VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           R E +++  +IV  +Q     E++ LF EM   G++ D ++++G +SAC++   + +GK 
Sbjct: 495 RKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKR 554

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
            +     +H +   +     ++D   R+G    A +    +PV+ D+ +W +L+
Sbjct: 555 YYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLL 608



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 138/296 (46%), Gaps = 43/296 (14%)

Query: 92  DLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMR 150
           ++F  N+L  M+AK G L  A+ VF  +  RD VS+ +++VG ++     E++    +M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 151 LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210
             G      +    +S+CA   A   G+++H   ++  L + + VANS+L+ Y + G  +
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAE 216

Query: 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
            A+ +F+ +PV+  +SWN ++     LG +D A +LFE+M     G   VS+ A++   +
Sbjct: 217 TASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESM----PGRSIVSWNAMIAGYN 272

Query: 271 HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWG 330
             GL  K  K F  M         +H + M                       PD     
Sbjct: 273 QNGLDAKALKLFSRM---------LHESSMA----------------------PDEFTIT 301

Query: 331 ALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN----MYAEAGKWDEASKV 382
           ++L AC   GNV +G     H ++L+ +   Y   ++N     YA++G  + A ++
Sbjct: 302 SVLSACANLGNVRIGKQV--HAYILRTE-MAYNSQVTNALISTYAKSGSVENARRI 354


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 161/449 (35%), Positives = 246/449 (54%), Gaps = 39/449 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL---VREMPIHNEFPN 57
           MYAK  R   A  +F  + E N VSW +++   AQ   + +AL L   +RE+P+ ++   
Sbjct: 290 MYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASD--- 346

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             TL  VL  C     +  G+++HA  I +GL+  + + NAL  MYAKCG +  A + F 
Sbjct: 347 QFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFE 406

Query: 118 I-SFRDEVSYNILIVGYSQTSDC-------------------------------SESLSL 145
           +   RD +S+  +I  +SQ  D                                 E L +
Sbjct: 407 LMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKV 466

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           + +M   G+K D ++F  +ISACA+LA +  G +I     +    +++ VANS++  Y+R
Sbjct: 467 YIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSR 526

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
            G+I+ A K+F  + +K+  SWN ++ GY   G+    I +FE M   G   D +SY+++
Sbjct: 527 CGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSV 586

Query: 266 LTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           L+ CSH G V +G+ YF  M  D  + P   H+ CMVDLLGRAG +E A  LI  +P +P
Sbjct: 587 LSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKP 646

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
           +A IWGALL ACRI+GN +L   A ++L  L  +  G Y LL+N+Y+E+GK    + VR+
Sbjct: 647 NAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRK 706

Query: 385 LMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           LM+ +  +KNPGCSW++  + V  F V+D
Sbjct: 707 LMRDKGVRKNPGCSWIEVDNRVHVFTVDD 735



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 152/291 (52%), Gaps = 5/291 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K     +A  LF  + E++ VSWN M++  +Q+    + L    EM      PNS+T 
Sbjct: 190 YSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTY 249

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            +VL AC   + L  G  +HARI+R     D++    L DMYAKCG L  A+ VF+ ++ 
Sbjct: 250 ASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTE 309

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
            + VS+  LI G +Q     E+L LF++MR + +  D  +    +  C +   I  G+++
Sbjct: 310 HNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQL 369

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H  TI + L + + VAN+++  Y + G +  AN  F+ +P++D  SW  +I  +   G+V
Sbjct: 370 HAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDV 429

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
           + A   F+ M E  V    +S+ ++L      G  E+G K + +M  + VK
Sbjct: 430 EKAREYFDKMPERNV----ISWNSMLATYMQRGYWEEGLKVYIQMLREGVK 476



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 178/423 (42%), Gaps = 45/423 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSV 59
           MY+     ++A  +F  I   N+ SWN M++ FA +    +A +L  +MP  +    NS+
Sbjct: 48  MYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSM 107

Query: 60  T--------LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL 111
                    L   + A     +L+   ++H    +     D  +  ++ DMY KCG ++ 
Sbjct: 108 MSGYFHNGELEATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDF 167

Query: 112 AQNVF--------------------------------NISFRDEVSYNILIVGYSQTSDC 139
           AQ VF                                 +  RD VS+N +I   SQ    
Sbjct: 168 AQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFG 227

Query: 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
           +E+L+ F EM   G + + +++   +SAC ++  ++ G  +H   +R      ++    +
Sbjct: 228 AETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGL 287

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
           +D Y + GR++ A ++FD L   ++ SW +LI G    G  + A+ LF  MRE  V  D 
Sbjct: 288 IDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQ 347

Query: 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319
            +   +L  C     +  G++         +  +      +V +  + G +  A    + 
Sbjct: 348 FTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFEL 407

Query: 320 LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA 379
           +P+  D   W A++ A    G+VE    A E+   +  ++   +  +   Y + G W+E 
Sbjct: 408 MPIR-DIISWTAMITAFSQAGDVEK---AREYFDKMPERNVISWNSMLATYMQRGYWEEG 463

Query: 380 SKV 382
            KV
Sbjct: 464 LKV 466



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 140/337 (41%), Gaps = 63/337 (18%)

Query: 65  LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDE 123
           +  CA    +   +++HA++I  GL   +FL N L +MY+ CG ++ A  VF  I F + 
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 70

Query: 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF-------------MGAISACAN 170
            S+N +I G++ +    E+  LF +M     + D VS+                I A  +
Sbjct: 71  YSWNTMISGFADSGQMREAEKLFEKMP----ERDSVSWNSMMSGYFHNGELEATIKASGS 126

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           L  +K   ++HG   +        V  S+LD Y + G +D A K+F   P      WN++
Sbjct: 127 LGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSM 186

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           I GY   G V  A+ LF  M E     D VS+  +++  S  G   +    F EM     
Sbjct: 187 IYGYSKYGSVKKALELFAKMPER----DTVSWNTMISILSQHGFGAETLNTFLEMWNQGF 242

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
           +P  M YA                                ++L AC    ++E GA    
Sbjct: 243 RPNSMTYA--------------------------------SVLSACTSIYDLEWGAHLHA 270

Query: 351 HLFMLKP-----QHCGYYILLSNMYAEAGKWDEASKV 382
            +  ++P       CG    L +MYA+ G+ + A +V
Sbjct: 271 RIVRMEPCLDVYAGCG----LIDMYAKCGRLESARQV 303



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 94/211 (44%), Gaps = 22/211 (10%)

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           F  ++  CA+L +I   +++H   I   L + +F+ N +L+ Y+  G I  A ++F  + 
Sbjct: 7   FYESMKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIM 66

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
             +  SWNT+I G+   G++  A  LFE M E     D VS+ ++++   H G +E   K
Sbjct: 67  FPNVYSWNTMISGFADSGQMREAEKLFEKMPER----DSVSWNSMMSGYFHNGELEATIK 122

Query: 281 YFDEMQADSVKPTEMHYA-------------CMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
               +    +      +A              ++D+  + G M+ A K+    P  P   
Sbjct: 123 ASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTP-NPSLF 181

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            W +++     YG+V+     A  LF   P+
Sbjct: 182 CWNSMIYGYSKYGSVK----KALELFAKMPE 208


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 155/447 (34%), Positives = 257/447 (57%), Gaps = 33/447 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +  K  +  EA  LF+ + EK++VSW+A+++ + QN +  +AL +  EM  +    + V 
Sbjct: 247 LLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVV 306

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + +VL ACA    ++ GK IH  +IR G+   + L NAL  MY+  G +  AQ +FN S 
Sbjct: 307 VVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSH 366

Query: 121 --------------------------------RDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                           +D VS++ +I GY+Q    SE+L+LF E
Sbjct: 367 NLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHE 426

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M+L  ++ D    +  ISAC +LAA+ QGK +H    +  L  ++ +  ++LD Y + G 
Sbjct: 427 MQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGC 486

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           ++ A ++F+ +  K  +SWN LI+G  + G V+ ++++F  M+ +GV  + ++++ +L A
Sbjct: 487 VENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGA 546

Query: 269 CSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           C H GLV++G+ +F  M +   ++P   HY CMVDLLGRAGL+ +A KLI+++P+ PD  
Sbjct: 547 CRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVA 606

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
            WGALLGAC+ +G+ E+G      L  L+P H G+++LLSN++A  G W++  +VR +MK
Sbjct: 607 TWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMK 666

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVNDR 414
            +   K PGCS ++    V +F+  D+
Sbjct: 667 QQGVVKTPGCSLIEANGVVHEFLAGDK 693



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 181/424 (42%), Gaps = 95/424 (22%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA---- 69
           +F  I   N   WN M+  + Q+    KAL L + M  +N  P++ T   V+ ACA    
Sbjct: 97  IFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLL 156

Query: 70  -------RGHFLRPG---------------------------------------KEIHAR 83
                    H L+ G                                         I A 
Sbjct: 157 EFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAG 216

Query: 84  IIRKG------LNFD------LFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILI 130
            ++KG      L FD      +  +N++  +  K G +  A  +FN +  +D VS++ LI
Sbjct: 217 YVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALI 276

Query: 131 VGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH 190
            GY Q     E+L +F EM   GM+ D V  +  +SACA+L+ +K GK IHG+ IR  + 
Sbjct: 277 SGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIE 336

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
           +++ + N+++  Y+ SG I  A K+F+     D  SWN++I G    G V+ A  LF+ M
Sbjct: 337 SYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVM 396

Query: 251 REDGV--------GY-----------------------DPVSYIAILTACSHGGLVEKGK 279
            E  +        GY                       D    +++++AC+H   +++GK
Sbjct: 397 PEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGK 456

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
                ++ + +K   +    ++D+  + G +E+A+++   +  E   + W AL+    + 
Sbjct: 457 WVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGME-EKGVSSWNALIIGLAVN 515

Query: 340 GNVE 343
           G VE
Sbjct: 516 GLVE 519



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 129/276 (46%), Gaps = 15/276 (5%)

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL--A 112
           F  ++TL+ +       H L+    I +++I  G   D F  + L         + L  +
Sbjct: 35  FKPTITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYS 94

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
             +F+ I   +   +N ++  Y Q++   ++L L+  M    +  D  ++   + ACA  
Sbjct: 95  LQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVR 154

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
                GKEIH   ++    + ++V N++++ Y   G +  A K+FD  PV DS SWN+++
Sbjct: 155 LLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSIL 214

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
            GY   G+V+ A  +F+ M +  +    V+  +++      G V +  K F+EM    + 
Sbjct: 215 AGYVKKGDVEEAKLIFDQMPQRNI----VASNSMIVLLGKMGQVMEAWKLFNEMDEKDM- 269

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
              + ++ ++    + G+ E+A+ +     +E +AN
Sbjct: 270 ---VSWSALISGYEQNGMYEEALVMF----IEMNAN 298


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 147/416 (35%), Positives = 243/416 (58%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+     A  LF  +  +N+++WNA++ N   +   L+  +    +      PN V+
Sbjct: 158 MYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLREAGGMPNVVS 217

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +     ACA   FL  G++ H  ++  G + D+ ++NA+ D Y KC C   A+ VF+ + 
Sbjct: 218 VCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMR 277

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+  +IV Y+Q     ++L+++   R  G +         ++ CA L  +  G+ 
Sbjct: 278 VRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRA 337

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H V +R  +  ++FVA++++D Y + G ++ A ++F  +P ++  +WN +I GY  +G+
Sbjct: 338 LHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGD 397

Query: 240 VDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
              A+ +F+AM R  G   + ++ + ++TACS GGL + G + FD M+    V+P   HY
Sbjct: 398 AQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHY 457

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           AC+VDLLGRAG+ E A ++I+ +P+ P  ++WGALLGAC+++G  ELG  A+E LF L P
Sbjct: 458 ACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEKLFELDP 517

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           Q  G ++LLSNM A AG+W EA+ VR+ MK+   KK PGCSW+  ++ V  F   D
Sbjct: 518 QDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKEPGCSWITWKNVVHVFYAKD 573



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 168/353 (47%), Gaps = 17/353 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K   PA A+    +     +VS+ A ++  AQ+   L AL     M      PN  T
Sbjct: 54  LYSKLDLPAAAASALASDPNPTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFT 113

Query: 61  LTNVL--PACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVF- 116
             +     ACA       G +IHA  +R G L  D F++ A  DMY K GCL LA+ +F 
Sbjct: 114 FPSAFKAAACAPPRCSTVGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFE 173

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  R+ +++N ++          E+   +  +R  G   +VVS     +ACA    +  
Sbjct: 174 EMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSL 233

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G++ HG  +       + V+N+++DFY +      A  +FD + V++S SW ++I+ Y  
Sbjct: 234 GEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQ 293

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVKP-- 292
            G  + A+ ++   R    G +P  ++  ++LT C+  GL+  G  +   + A +V+   
Sbjct: 294 HGAEEDALAVYMGARN--TGEEPTDFMVSSVLTTCA--GLL--GLNFGRALHAVAVRSCI 347

Query: 293 --TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
                  + +VD+ G+ G +EDA ++  ++P E +   W A++G     G+ +
Sbjct: 348 DANIFVASALVDMYGKCGGVEDAEQVFLDMP-ERNLVTWNAMIGGYAHIGDAQ 399



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 98/212 (46%), Gaps = 5/212 (2%)

Query: 75  RPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEV-SYNILIVG 132
           R G+  HAR +R        F+   L ++Y+K      A +         V S+   I G
Sbjct: 26  RLGRAAHARALRLLSPGLPPFICAHLVNLYSKLDLPAAAASALASDPNPTVVSFTAFISG 85

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI--SACANLAAIKQGKEIHGVTIR-KHL 189
            +Q +    +LS F+ M  +G++ +  +F  A   +ACA       G +IH + +R  +L
Sbjct: 86  AAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQIHALALRFGYL 145

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
               FV+ + +D Y ++G + LA ++F+ +P ++  +WN ++    + G        +  
Sbjct: 146 PGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFG 205

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
           +RE G   + VS  A   AC+    +  G+++
Sbjct: 206 LREAGGMPNVVSVCAFFNACAGAMFLSLGEQF 237


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  293 bits (751), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 151/406 (37%), Positives = 240/406 (59%), Gaps = 2/406 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F  I   NI +WN M+  +A++   + AL+L R+M +    P++ T   +L A A+
Sbjct: 93  AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRDEVSYNIL 129
              +R G+++H+  IR G    +F+ N L  MYA CG    A  +F + + R+ V++N +
Sbjct: 153 LMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSV 212

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY+     +E+L+LF EM L G++ D  + +  +SACA L A+  G+  H   ++  L
Sbjct: 213 INGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGL 272

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             +L   N++LD Y + G I  A+K+FD +  K   SW +LI+G  + G    A+ LF+ 
Sbjct: 273 DGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKE 332

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAG 308
           +   G+    ++++ +L ACSH G+V++G  YF  M+ +  + P   HY CMVDLLGRAG
Sbjct: 333 LERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAG 392

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
           L++ A + I+N+P++P+A +W  LLGAC I+G++ LG  A   L  L+P+H G Y+LLSN
Sbjct: 393 LVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSN 452

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +YA   +W +  KVR  M     KK PG S V+ R+ + +FV+ DR
Sbjct: 453 LYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDR 498



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 133/257 (51%), Gaps = 20/257 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA       A  LF  +AE+N+V+WN+++  +A N    +AL L REM +    P+  T
Sbjct: 184 MYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFT 243

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + ++L ACA    L  G+  H  +++ GL+ +L   NAL D+YAKCG +  A  VF+ + 
Sbjct: 244 MVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEME 303

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
            +  VS+  LIVG +      E+L LF E+   G+    ++F+G + AC++   + +G  
Sbjct: 304 EKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFD 363

Query: 178 -----KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA-SWNTL- 230
                KE +G+  +   +        ++D   R+G +  A++    +P++ +A  W TL 
Sbjct: 364 YFKRMKEEYGIVPKIEHY------GCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLL 417

Query: 231 ----ILGYGMLGEVDTA 243
               I G+  LGEV  A
Sbjct: 418 GACTIHGHLALGEVARA 434


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  293 bits (751), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 145/414 (35%), Positives = 254/414 (61%), Gaps = 2/414 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K      A  +F  + E+++VSWN M+  + +NR+E +AL +  EM       +  T+
Sbjct: 106 YSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTI 165

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
           ++VL AC         K++H   ++  ++ +L++  AL D+YAKCG +  A  VF ++  
Sbjct: 166 SSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQD 225

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  V+++ ++ GY Q  +  E+L L+   + + ++ +  +    I AC+NLAA+ +GK++
Sbjct: 226 KSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQM 285

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H V  +    +++FVA+S +D Y + G +  +  IF  +  K+   WNT+I G+      
Sbjct: 286 HAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARP 345

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
              + LFE M++DG+  + V++ ++L+ C H GLVE+G+++F  M+    + P  +HY+C
Sbjct: 346 KEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSC 405

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVD+LGRAGL+ +A +LIK++P +P A+IWG+LL +CR+Y N+EL   AAE LF L+P++
Sbjct: 406 MVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPEN 465

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G ++LLSN+YA   +W+E +K R+L++  + KK  G SW+  +D+V  F V +
Sbjct: 466 AGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGE 519



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 140/284 (49%), Gaps = 2/284 (0%)

Query: 53  NEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
           NEF N   +  +L  CAR   +   K  H +IIR  L  D+ L N L + Y+KCG + LA
Sbjct: 56  NEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELA 115

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
           + VF+ +  R  VS+N +I  Y++    SE+L +F EMR  G K    +    +SAC   
Sbjct: 116 RQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVN 175

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
               + K++H ++++  +  +L+V  ++LD Y + G I  A ++F+ +  K S +W++++
Sbjct: 176 CDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMV 235

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
            GY      + A+ L+   +   +  +  +  +++ ACS+   + +GK+    +      
Sbjct: 236 AGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFG 295

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                 +  VD+  + G + ++  +   +  E +  +W  ++  
Sbjct: 296 SNVFVASSAVDMYAKCGSLRESYIIFSEVQ-EKNLELWNTIISG 338



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 128/234 (54%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK     +A  +F ++ +K+ V+W++MVA + QN+   +AL L R     +   N  T
Sbjct: 206 LYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFT 265

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L++V+ AC+    L  GK++HA I + G   ++F+ ++  DMYAKCG L  +  +F+ + 
Sbjct: 266 LSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ 325

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++   +N +I G+++ +   E + LF +M+  GM  + V+F   +S C +   +++G+ 
Sbjct: 326 EKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRR 385

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
              +    + L  ++   + ++D   R+G +  A ++   +P   +AS W +L+
Sbjct: 386 FFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLL 439


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  293 bits (751), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 145/414 (35%), Positives = 254/414 (61%), Gaps = 2/414 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K      A  +F  + E+++VSWN M+  + +NR+E +AL +  EM       +  T+
Sbjct: 98  YSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTI 157

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
           ++VL AC         K++H   ++  ++ +L++  AL D+YAKCG +  A  VF ++  
Sbjct: 158 SSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQD 217

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  V+++ ++ GY Q  +  E+L L+   + + ++ +  +    I AC+NLAA+ +GK++
Sbjct: 218 KSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQM 277

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H V  +    +++FVA+S +D Y + G +  +  IF  +  K+   WNT+I G+      
Sbjct: 278 HAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARP 337

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
              + LFE M++DG+  + V++ ++L+ C H GLVE+G+++F  M+    + P  +HY+C
Sbjct: 338 KEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSC 397

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVD+LGRAGL+ +A +LIK++P +P A+IWG+LL +CR+Y N+EL   AAE LF L+P++
Sbjct: 398 MVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPEN 457

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G ++LLSN+YA   +W+E +K R+L++  + KK  G SW+  +D+V  F V +
Sbjct: 458 AGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGE 511



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 140/284 (49%), Gaps = 2/284 (0%)

Query: 53  NEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
           NEF N   +  +L  CAR   +   K  H +IIR  L  D+ L N L + Y+KCG + LA
Sbjct: 48  NEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELA 107

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
           + VF+ +  R  VS+N +I  Y++    SE+L +F EMR  G K    +    +SAC   
Sbjct: 108 RQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVN 167

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
               + K++H ++++  +  +L+V  ++LD Y + G I  A ++F+ +  K S +W++++
Sbjct: 168 CDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMV 227

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
            GY      + A+ L+   +   +  +  +  +++ ACS+   + +GK+    +      
Sbjct: 228 AGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFG 287

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                 +  VD+  + G + ++  +   +  E +  +W  ++  
Sbjct: 288 SNVFVASSAVDMYAKCGSLRESYIIFSEVQ-EKNLELWNTIISG 330



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 128/234 (54%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK     +A  +F ++ +K+ V+W++MVA + QN+   +AL L R     +   N  T
Sbjct: 198 LYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFT 257

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L++V+ AC+    L  GK++HA I + G   ++F+ ++  DMYAKCG L  +  +F+ + 
Sbjct: 258 LSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ 317

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++   +N +I G+++ +   E + LF +M+  GM  + V+F   +S C +   +++G+ 
Sbjct: 318 EKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRR 377

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
              +    + L  ++   + ++D   R+G +  A ++   +P   +AS W +L+
Sbjct: 378 FFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLL 431


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  293 bits (751), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 154/439 (35%), Positives = 253/439 (57%), Gaps = 25/439 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL--------------V 46
           +Y K     +A  +F  + E+N+VSW AM++ ++Q     +AL L              +
Sbjct: 287 LYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAI 346

Query: 47  REMPIHN-------EFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99
            ++ + N         PN  T   VL +C        G++IH+ II+      +F+ ++L
Sbjct: 347 DKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSL 406

Query: 100 TDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
            DMYAK G ++ A+ VF  +  RD VS   +I GY+Q     E+L LF  ++  GMK + 
Sbjct: 407 LDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNY 466

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
           V++ G ++A + LAA+  GK++H   +R  + + + + NS++D Y++ G +  + +IFD 
Sbjct: 467 VTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDT 526

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEK 277
           +  +   SWN +++GY   GE    + LF  MRE+  V  D V+ +A+L+ CSHGGL +K
Sbjct: 527 MYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDK 586

Query: 278 GKKYFDEMQAD--SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           G   F++M +    V+P   HY C+VDLLGR+G +E+A + IK +P EP A IWG+LLGA
Sbjct: 587 GLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGA 646

Query: 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395
           CR++ NV++G +A + L  ++P + G Y++LSN+YA AG+W++ S +R+LM  +   K P
Sbjct: 647 CRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEP 706

Query: 396 GCSWVQTRDEVQDFVVNDR 414
           G S ++    +  F  +DR
Sbjct: 707 GRSSIELDQVLHTFHASDR 725



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 141/292 (48%), Gaps = 23/292 (7%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L  C      R G+ +HA +I+      +FL   L  +Y KC  L  A NVF+ +  R+
Sbjct: 249 ILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERN 308

Query: 123 EVSYNILIVGYSQTSDCSESLSLF---SEMRLLGM------------------KHDVVSF 161
            VS+  +I  YSQ    S++L+LF    ++ L G+                  + +  +F
Sbjct: 309 VVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTF 368

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
              +++C +      G++IH + I+ +   H+FV +S+LD Y + G+I  A  +F+CLP 
Sbjct: 369 ATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPE 428

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
           +D  S   +I GY  LG  + A+ LF  ++ +G+  + V+Y  +LTA S    ++ GK+ 
Sbjct: 429 RDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQV 488

Query: 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            + +    +    +    ++D+  + G +  + ++   +  E     W A+L
Sbjct: 489 HNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTM-YERTVISWNAML 539



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 49/102 (48%)

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           +M L G      ++   ++ C N  A ++G+ +H   I+      +F+   ++  YT+  
Sbjct: 233 QMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCD 292

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            +  A+ +FD +P ++  SW  +I  Y   G    A+NLF A
Sbjct: 293 SLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFA 334


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  293 bits (751), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 161/436 (36%), Positives = 251/436 (57%), Gaps = 23/436 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPN 57
           MYA + + A A  +F  + E  + +  WNAM+  +AQ  ++ +AL+L   M       P+
Sbjct: 327 MYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPS 386

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             T++ VLPACAR       + +H  ++++G+  + F+ NAL DMYA+ G +++A+ +F 
Sbjct: 387 ETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFA 446

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL------------GMKHDV----VS 160
            I  RD VS+N LI G       +E+  L +EM+L             G  H      ++
Sbjct: 447 MIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNIT 506

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
            M  +  CA LAA  +GKEIHG  +R  L + + V ++++D Y + G +  +  +FD LP
Sbjct: 507 LMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLP 566

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGK 279
            ++  +WN LI+ YGM G  D A+ LF+ M   G    + V++IA L ACSH GLV++G 
Sbjct: 567 RRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGL 626

Query: 280 KYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACR 337
           + F  M+ D  VKPT   +AC+VD+LGRAG +++A  +I ++ P E   + W +LLGACR
Sbjct: 627 ELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACR 686

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           ++ NVELG  AAE LF L+P    +Y+LL N+Y+ AG WD++  VR  M+ +   K PGC
Sbjct: 687 LHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGC 746

Query: 398 SWVQTRDEVQDFVVND 413
           SW++    +  F+  +
Sbjct: 747 SWIELDGAIHRFMAGE 762



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 169/351 (48%), Gaps = 43/351 (12%)

Query: 21  KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVTLTNVLPACAR---GHFLRP 76
           ++ VS+N++++     R   +AL  +R+M        +S TL +VL AC+        R 
Sbjct: 131 RDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRL 190

Query: 77  GKEIHARIIRKGL---NFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-------DEVSY 126
           G+E HA  +++G      + F  NAL  MYA+ G ++ AQ++F  +         D V++
Sbjct: 191 GREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTW 250

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           N +I    Q   C+E++ +  +M  LG++ D V+F  A+ AC+ L  +  G+E+H V ++
Sbjct: 251 NTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLK 310

Query: 187 K-HLHTHLFVANSILDFYTRSGRIDLANKIFDCL--PVKDSASWNTLILGYGMLGEVDTA 243
              L  + FVA++++D Y  + ++  A ++FD +  P +    WN +I GY   G  + A
Sbjct: 311 DADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEA 370

Query: 244 INLFEAMR-EDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQADSVK 291
           + LF  M  E G      +   +L AC+           HG +V++G      +Q     
Sbjct: 371 LELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQ----- 425

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP-DANIWGALLGACRIYGN 341
                   ++D+  R G M+ A ++     ++P D   W  L+  C + G+
Sbjct: 426 ------NALMDMYARLGEMDVARRIFAM--IDPRDVVSWNTLITGCVVQGH 468



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 146/376 (38%), Gaps = 73/376 (19%)

Query: 80  IHARIIRKGL--NFDLFLTNALTDMYAKCG---CLNLAQNVFNISFRDEVSYNILIVGYS 134
           +HA  +R+ L       + NAL   YA+CG                RD VSYN LI    
Sbjct: 85  LHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALC 144

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSF--MGAISACANLA---AIKQGKEIHGVTIRKHL 189
                  +L    +M   G +HDV SF  +  + AC++L      + G+E H   +++  
Sbjct: 145 LFRQWERALDALRDMLAEG-RHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGF 203

Query: 190 ---HTHLFVANSILDFYTRSGRIDLANKIFDCLPVK------DSASWNTLILGYGMLGEV 240
                  F  N++L  Y R G +D A  +F            D  +WNT+I      G  
Sbjct: 204 LDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRC 263

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH---- 296
             A+ +   M   GV  D V++ + L ACS   ++  G+    EM A  +K  ++     
Sbjct: 264 AEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGR----EMHAVVLKDADLAANSF 319

Query: 297 -YACMVDL-----------------------LG----------RAGLMEDAVKLIKNLPV 322
             + +VD+                       LG          +AG+ E+A++L   +  
Sbjct: 320 VASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEA 379

Query: 323 E----PDANIWGALLGAC-RIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAG 374
           E    P       +L AC R  G        A H +++K    G   +   L +MYA  G
Sbjct: 380 EAGCAPSETTMSGVLPACARSEG---FAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLG 436

Query: 375 KWDEASKVRELMKSRE 390
           + D A ++  ++  R+
Sbjct: 437 EMDVARRIFAMIDPRD 452


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  293 bits (751), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 151/417 (36%), Positives = 245/417 (58%), Gaps = 6/417 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY KS    + + +F  +   ++VSWNA+++ F  ++   +  ++  +M +    PN  T
Sbjct: 196 MYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFT 255

Query: 61  LTNVLPACARGHFLRP--GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
             +VL +C+    L P  GK++HA II+   + D F+  AL DMYAK  CL  A   F+ 
Sbjct: 256 FISVLRSCSS--LLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDR 313

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  RD  S+ ++I GY+QT    +++  F +M+  G+K +  +    +S C+++A ++ G
Sbjct: 314 LVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENG 373

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           +++H V ++      +FV ++++D Y + G ++ A  IF  L  +D  SWNT+I GY   
Sbjct: 374 RQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQH 433

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMH 296
           G+ + A+  F  M  +G+  D  ++I +L+ACS  GLVE+GKK FD M +   + P+  H
Sbjct: 434 GQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEH 493

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YACMVD+LGRAG   +    I+ + + P + IW  +LGAC+++GNV+ G  AA+ LF ++
Sbjct: 494 YACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEME 553

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P     YILLSN++A  G+WD+   +R LM SR  KK PGCSWV+   +V  F+  D
Sbjct: 554 PMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQD 610



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 167/350 (47%), Gaps = 14/350 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +F  I   ++V+W+AM+    Q     +A +L   M      PN  T
Sbjct: 95  MYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFT 154

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L++++        LR G+ IH  I + G   D  ++N L  MY K  C+     VF  ++
Sbjct: 155 LSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMT 214

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VS+N L+ G+  +  C     +F +M L G K ++ +F+  + +C++L   + GK+
Sbjct: 215 NPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQ 274

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+       FV  +++D Y ++  ++ A   FD L  +D  SW  +I GY    +
Sbjct: 275 VHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQ 334

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY-- 297
            + A+  F  M+ +G+  +  +  + L+ CSH   +E G+    ++ A +VK    H+  
Sbjct: 335 AEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGR----QLHAVAVKAG--HFGD 388

Query: 298 ----ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
               + +VDL G+ G ME A  + K L +  D   W  ++     +G  E
Sbjct: 389 IFVGSALVDLYGKCGCMEHAEAIFKGL-ISRDIVSWNTIISGYSQHGQGE 437



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 147/304 (48%), Gaps = 1/304 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  + EKN VSWNA++  +AQ     K L+L  +M       +  TL+ VL  CA 
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              LR GK +HA  +R G   D FL  +L DMY+KCG +  A  VF  I   D V+++ +
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I G  Q     E+  LF  MR  G + +  +    +S   N+  ++ G+ IHG   +   
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF 183

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            +   V+N ++  Y +S  ++  NK+F+ +   D  SWN L+ G+           +F  
Sbjct: 184 ESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQ 243

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M  +G   +  ++I++L +CS     E GK+    +  +S    +     +VD+  +A  
Sbjct: 244 MLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARC 303

Query: 310 MEDA 313
           +EDA
Sbjct: 304 LEDA 307



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 16/233 (6%)

Query: 109 LNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
           + LA+ +F  +  ++ VS+N L+ GY+Q  D  + L LF +M+    K    +    +  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           CAN  ++++GK +H + +R       F+  S++D Y++ G +  A K+F  +   D  +W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-------K 280
           + +I G    G    A  LF  MR  G   +  +  ++++  ++ G +  G+       K
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           Y  E       P  M Y        ++  +ED  K+ + +   PD   W ALL
Sbjct: 181 YGFESDNLVSNPLIMMYM-------KSRCVEDGNKVFEAM-TNPDLVSWNALL 225


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 146/416 (35%), Positives = 243/416 (58%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY        A  +F  +  +++VSW  M+  +A+N     A  L   M      P+ +T
Sbjct: 307 MYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRIT 366

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +++ ACA    L   +EIH++++R G   DL +  AL  MYAKCG +  A+ VF+ +S
Sbjct: 367 YIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMS 426

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS++ +I  Y +     E+   F  M+   ++ DVV+++  ++AC +L A+  G E
Sbjct: 427 RRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGME 486

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I+   I+  L +H+ V N++++   + G I+ A  IF+ +  +D  +WN +I GY + G 
Sbjct: 487 IYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGN 546

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A++LF+ M ++    + V+++ +L+ACS  G VE+G+++F  +     + PT   Y 
Sbjct: 547 AREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYG 606

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAG +++A  LI  +P++P+++IW  LL ACRIYGN+++   AAE   M +P 
Sbjct: 607 CMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPY 666

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y+ LS+MYA AG W+  +KVR++M+SR  +K  GC+W++   ++  FVV DR
Sbjct: 667 DGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDR 722



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 171/327 (52%), Gaps = 2/327 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EA   F ++  K +V+WNA++A +AQ     +A  L R+M      P+ +T   VL AC+
Sbjct: 114 EARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACS 173

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNI 128
               L+ GKE HA++I+ G   D  +  AL  MY K G ++ A+ VF+  ++ +VS +N+
Sbjct: 174 SPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNV 233

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +I GY+++ D  ++  LF  M+  G K + +SF+  +  C+   A+  GK +H   +   
Sbjct: 234 MIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTG 293

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L   + VA +++  Y   G I+ A ++FD + V+D  SW  +I GY     ++ A  LF 
Sbjct: 294 LVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFA 353

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            M+E+G+  D ++YI I+ AC+    +   ++   ++         +    +V +  + G
Sbjct: 354 TMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCG 413

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGA 335
            ++DA ++   +    D   W A++GA
Sbjct: 414 AIKDARQVFDAMS-RRDVVSWSAMIGA 439



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 182/343 (53%), Gaps = 4/343 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  + ++++ ++N M+  +A++    KA QL   M      PN ++
Sbjct: 206 MYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRIS 265

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L  C+    L  GK +HA+ +  GL  D+ +  AL  MY  CG +  A+ VF+ + 
Sbjct: 266 FLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMK 325

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+ ++I GY++ S+  ++  LF+ M+  G++ D ++++  I+ACA+ A +   +E
Sbjct: 326 VRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLARE 385

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +R    T L V  +++  Y + G I  A ++FD +  +D  SW+ +I  Y   G 
Sbjct: 386 IHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGC 445

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK-YFDEMQADSVKPTEMHYA 298
            + A   F  M+ + V  D V+YI +L AC H G ++ G + Y   ++AD V    +  A
Sbjct: 446 GEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNA 505

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
            ++++  + G +E A  + +N+ V+ D   W  ++G   ++GN
Sbjct: 506 -LINMNVKHGSIERARYIFENM-VQRDVVTWNVMIGGYSLHGN 546



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 165/357 (46%), Gaps = 50/357 (14%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           GK++   II+ G   +++  N L  +++ CG +  A+  F+ +  +  V++N +I GY+Q
Sbjct: 80  GKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQ 139

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
                E+ +LF +M    M+  +++F+  + AC++ A +K GKE H   I+    +   +
Sbjct: 140 LGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRI 199

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
             +++  Y + G +D A ++FD L  +D +++N +I GY   G+ + A  LF  M+++G 
Sbjct: 200 GTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGF 259

Query: 256 GYDPVSYIAILTACS-----------HG------------------------GLVEKGKK 280
             + +S+++IL  CS           H                         G +E  ++
Sbjct: 260 KPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARR 319

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACR 337
            FD+M+   V    + +  M+        +EDA  L   +    ++PD   +  ++ AC 
Sbjct: 320 VFDKMKVRDV----VSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACA 375

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYIL----LSNMYAEAGKWDEASKVRELMKSRE 390
              ++ L   A E    +     G  +L    L +MYA+ G   +A +V + M  R+
Sbjct: 376 SSADLSL---AREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRD 429



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 84/187 (44%), Gaps = 1/187 (0%)

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
           D  +++     C  L     GK++    I+     +++  N+++  ++  G +  A + F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
           D +  K   +WN +I GY  LG V  A  LF  M ++ +    ++++ +L ACS    ++
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
            GK++  ++              +V +  + G M+ A ++   L  + D + +  ++G  
Sbjct: 180 LGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGL-YKRDVSTFNVMIGGY 238

Query: 337 RIYGNVE 343
              G+ E
Sbjct: 239 AKSGDGE 245


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 155/446 (34%), Positives = 242/446 (54%), Gaps = 34/446 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++    EA  LF  +  +N +SW  M+A +AQN    +AL L++E+      P+  +L
Sbjct: 363 YMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSL 422

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----- 116
           T++  AC+    L  G ++H+  ++ G  F+ F  NAL  MY KC  +  A+ VF     
Sbjct: 423 TSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVT 482

Query: 117 ---------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                      N+  RD+VS+  +I  Y+     +E++  F  M
Sbjct: 483 KDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTM 542

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
                  +       +  C +L A K G++IH V I+  + + L VAN+++  Y + G  
Sbjct: 543 FCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCA 602

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           D + +IFD +  +D  +WNT+I GY   G    AI +++ M   GV  + V+++ +L AC
Sbjct: 603 D-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNAC 661

Query: 270 SHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           SH GLV++G K+F  M  D  + P   HYACMVDLLGR G ++ A + I ++P+EPD  I
Sbjct: 662 SHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVI 721

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
           W ALLGAC+I+ N E+G  AAE LF ++P + G Y++LSN+Y+  G W E ++VR++MK 
Sbjct: 722 WSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQ 781

Query: 389 REAKKNPGCSWVQTRDEVQDFVVNDR 414
           +   K PGCSW Q +D++  FV  D+
Sbjct: 782 QGVIKEPGCSWTQIKDKMHSFVTGDK 807



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 136/297 (45%), Gaps = 15/297 (5%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
            F ++ E+N  +W+ M+A  +       A+ +    P+ +    +  +T  L  C     
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITG-LAQC----- 335

Query: 74  LRPGKEIHARIIRKGLNFDLFLT-NALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
              G+   ARI+ + +   + ++ NAL   Y + G +N A+ +F+ + FR+ +S+  +I 
Sbjct: 336 ---GRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIA 392

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           GY+Q     E+L L  E+   GM   + S      AC+N+ A++ G ++H + ++     
Sbjct: 393 GYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQF 452

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
           + F  N+++  Y +   ++ A ++F  +  KD  SWN+ +        +D A N F+ M 
Sbjct: 453 NSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM- 511

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
              +  D VS+  I++A +H     +    F  M  +   P       ++ + G  G
Sbjct: 512 ---LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLG 565



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 154/379 (40%), Gaps = 82/379 (21%)

Query: 7   RPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLP 66
           R  EA  +F  +  ++I++WN+M++ +  N +   A  L   +   N    ++ L+    
Sbjct: 49  RVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSG--- 105

Query: 67  ACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-------- 117
                 + R G+ + AR +  G L  +    NA+   Y + G + +A+ +F+        
Sbjct: 106 ------YGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVS 159

Query: 118 ------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
                                   +  R+ VS+ ++I GY +  +  ++  +F +M   G
Sbjct: 160 SWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREG 219

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR-------- 205
           +  D  +F  A+SA   L  +   + +  + ++      + +  +IL+ Y+R        
Sbjct: 220 LLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTA 279

Query: 206 ------------------------SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
                                    GRID A  +++  PVK  A    LI G    G +D
Sbjct: 280 IKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRID 339

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            A  LFE + E  V    VS+ A++T     G+V + K+ FD+M   +     + +A M+
Sbjct: 340 DARILFEQIPEPIV----VSWNALITGYMQNGMVNEAKELFDKMPFRNT----ISWAGMI 391

Query: 302 DLLGRAGLMEDAVKLIKNL 320
               + G  E+A+ L++ L
Sbjct: 392 AGYAQNGRSEEALGLLQEL 410



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 150/340 (44%), Gaps = 19/340 (5%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y  S +  +A  LF  + E+N+VSW  M++ + +     KA  +  +M      P+    
Sbjct: 168 YCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNF 227

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK-CGCLNLAQNVF-NIS 119
            + L A      L   + +    ++ G   D+ +  A+ ++Y++    L+ A   F ++ 
Sbjct: 228 ASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMI 287

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+E +++ +I   S       +++++        + D V  +   +A   +  + Q   
Sbjct: 288 ERNEYTWSTMIAALSHGGRIDAAIAVY--------ERDPVKSIACRTAL--ITGLAQCGR 337

Query: 180 IHGVTIR-KHLHTHLFVA-NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           I    I  + +   + V+ N+++  Y ++G ++ A ++FD +P +++ SW  +I GY   
Sbjct: 338 IDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQN 397

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G  + A+ L + +   G+     S  +I  ACS+   +E G +      A  V      +
Sbjct: 398 GRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHS--LAVKVGCQFNSF 455

Query: 298 AC--MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           AC  ++ + G+   ME A ++   + V  D   W + L A
Sbjct: 456 ACNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAA 494



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 107/236 (45%), Gaps = 20/236 (8%)

Query: 104 AKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM 162
            + G +  A+ VF+ +  RD +++N +I  Y        +  L+  +    M+   +   
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAI--- 101

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
             +S    L  + + + +        L  +    N+++  Y ++G I +A ++FD +P +
Sbjct: 102 -LLSGYGRLGRVLEARRV----FDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSR 156

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY- 281
           D +SWN+++ GY    ++  A NLFE M E  +    VS+  +++   +G +   GK + 
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNL----VSWTVMISG--YGRIENHGKAWD 210

Query: 282 -FDEMQADSVKPTEMHYA---CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            F +M  + + P + ++A     V  LG   ++E    L      E D  I  A+L
Sbjct: 211 IFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAIL 266


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 155/446 (34%), Positives = 242/446 (54%), Gaps = 34/446 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++    EA  LF  +  +N +SW  M+A +AQN    +AL L++E+      P+  +L
Sbjct: 363 YMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSL 422

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----- 116
           T++  AC+    L  G ++H+  ++ G  F+ F  NAL  MY KC  +  A+ VF     
Sbjct: 423 TSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVT 482

Query: 117 ---------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                      N+  RD+VS+  +I  Y+     +E++  F  M
Sbjct: 483 KDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTM 542

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
                  +       +  C +L A K G++IH V I+  + + L VAN+++  Y + G  
Sbjct: 543 FCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCA 602

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           D + +IFD +  +D  +WNT+I GY   G    AI +++ M   GV  + V+++ +L AC
Sbjct: 603 D-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNAC 661

Query: 270 SHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           SH GLV++G K+F  M  D  + P   HYACMVDLLGR G ++ A + I ++P+EPD  I
Sbjct: 662 SHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVI 721

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
           W ALLGAC+I+ N E+G  AAE LF ++P + G Y++LSN+Y+  G W E ++VR++MK 
Sbjct: 722 WSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQ 781

Query: 389 REAKKNPGCSWVQTRDEVQDFVVNDR 414
           +   K PGCSW Q +D++  FV  D+
Sbjct: 782 QGVIKEPGCSWTQIKDKMHSFVTGDK 807



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 136/297 (45%), Gaps = 15/297 (5%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
            F ++ E+N  +W+ M+A  +       A+ +    P+ +    +  +T  L  C     
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITG-LAQC----- 335

Query: 74  LRPGKEIHARIIRKGLNFDLFLT-NALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
              G+   ARI+ + +   + ++ NAL   Y + G +N A+ +F+ + FR+ +S+  +I 
Sbjct: 336 ---GRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIA 392

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           GY+Q     E+L L  E+   GM   + S      AC+N+ A++ G ++H + ++     
Sbjct: 393 GYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQF 452

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
           + F  N+++  Y +   ++ A ++F  +  KD  SWN+ +        +D A N F+ M 
Sbjct: 453 NSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM- 511

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
              +  D VS+  I++A +H     +    F  M  +   P       ++ + G  G
Sbjct: 512 ---LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLG 565



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 154/379 (40%), Gaps = 82/379 (21%)

Query: 7   RPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLP 66
           R  EA  +F  +  ++I++WN+M++ +  N +   A  L   +   N    ++ L+    
Sbjct: 49  RVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSG--- 105

Query: 67  ACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-------- 117
                 + R G+ + AR +  G L  +    NA+   Y + G + +A+ +F+        
Sbjct: 106 ------YGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVS 159

Query: 118 ------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
                                   +  R+ VS+ ++I GY +  +  ++  +F +M   G
Sbjct: 160 SWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREG 219

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR-------- 205
           +  D  +F  A+SA   L  +   + +  + ++      + +  +IL+ Y+R        
Sbjct: 220 LLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTA 279

Query: 206 ------------------------SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
                                    GRID A  +++  PVK  A    LI G    G +D
Sbjct: 280 IKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRID 339

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            A  LFE + E  V    VS+ A++T     G+V + K+ FD+M   +     + +A M+
Sbjct: 340 DARILFEQIPEPIV----VSWNALITGYMQNGMVNEAKELFDKMPFRNT----ISWAGMI 391

Query: 302 DLLGRAGLMEDAVKLIKNL 320
               + G  E+A+ L++ L
Sbjct: 392 AGYAQNGRSEEALGLLQEL 410



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 150/340 (44%), Gaps = 19/340 (5%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y  S +  +A  LF  + E+N+VSW  M++ + +     KA  +  +M      P+    
Sbjct: 168 YCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNF 227

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK-CGCLNLAQNVF-NIS 119
            + L A      L   + +    ++ G   D+ +  A+ ++Y++    L+ A   F ++ 
Sbjct: 228 ASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMI 287

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+E +++ +I   S       +++++        + D V  +   +A   +  + Q   
Sbjct: 288 ERNEYTWSTMIAALSHGGRIDAAIAVY--------ERDPVKSIACRTAL--ITGLAQCGR 337

Query: 180 IHGVTIR-KHLHTHLFVA-NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           I    I  + +   + V+ N+++  Y ++G ++ A ++FD +P +++ SW  +I GY   
Sbjct: 338 IDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQN 397

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G  + A+ L + +   G+     S  +I  ACS+   +E G +      A  V      +
Sbjct: 398 GRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHS--LAVKVGCQFNSF 455

Query: 298 AC--MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           AC  ++ + G+   ME A ++   + V  D   W + L A
Sbjct: 456 ACNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAA 494



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 107/236 (45%), Gaps = 20/236 (8%)

Query: 104 AKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM 162
            + G +  A+ VF+ +  RD +++N +I  Y        +  L+  +    M+   +   
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAI--- 101

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
             +S    L  + + + +        L  +    N+++  Y ++G I +A ++FD +P +
Sbjct: 102 -LLSGYGRLGRVLEARRV----FDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSR 156

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY- 281
           D +SWN+++ GY    ++  A NLFE M E  +    VS+  +++   +G +   GK + 
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNL----VSWTVMISG--YGRIENHGKAWD 210

Query: 282 -FDEMQADSVKPTEMHYA---CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            F +M  + + P + ++A     V  LG   ++E    L      E D  I  A+L
Sbjct: 211 IFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAIL 266


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 159/425 (37%), Positives = 239/425 (56%), Gaps = 19/425 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEK----NIVSWNAM------VANFAQNRLELKALQLVREMPI 51
           Y+      EA  LF ++  K    N+V+WN +      V NF Q    LK L  +R   I
Sbjct: 256 YSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQ---ALKLLSQMRNFGI 312

Query: 52  HNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL 111
           H    + V +   L AC+    +R GKEIH   IR   +    + NAL  MYA+C  +  
Sbjct: 313 H---LDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHHMLSTVQNALVTMYARCKDIRH 369

Query: 112 AQNVFNISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170
           A  +F ++  +  +++N ++ G +      E+L LF E+ L G++ D V+F   +  CA 
Sbjct: 370 AYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELLLFGVEPDYVTFASILPLCAR 429

Query: 171 LAAIKQGKEIHG-VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
           +A ++ G+E H  +T  +    HL + N+++D Y R+G++  A +IF  L  KD  ++ +
Sbjct: 430 VADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSEAKRIFYSLSKKDEVTYTS 489

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-D 288
           LI GYGM GE   A+ LFE M+   +  D ++ IA+L+ACSH GLV + +  F EMQ+  
Sbjct: 490 LIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAVLSACSHSGLVNQAELLFAEMQSVH 549

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWA 348
            + P   HYACM DL GR GL+  A ++I  +P  P + IW  L+GAC I+GN+++G WA
Sbjct: 550 GLSPRLEHYACMADLFGRVGLLNKAKEIITRMPYRPTSAIWATLIGACCIHGNMDIGEWA 609

Query: 349 AEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQD 408
           AE L  ++P+H GYY+L++NMYA AG W + +++R LM+     K PGCSWV    E   
Sbjct: 610 AEKLLEMRPEHSGYYVLIANMYAAAGSWSKLAEIRTLMRDSGVAKIPGCSWVDVGSEFIS 669

Query: 409 FVVND 413
           F V D
Sbjct: 670 FSVGD 674



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 182/382 (47%), Gaps = 40/382 (10%)

Query: 25  SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARI 84
           SWN ++ ++ +++L   A+   ++M      P++ T  ++L AC     L+ G E+H  I
Sbjct: 147 SWNILITSYVKHKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSI 206

Query: 85  IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQ-------- 135
                 + LF+ NAL  MY +CG ++ A+N+F N+  RD VS+N +I  YS         
Sbjct: 207 NSWSTPWSLFVHNALISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAF 266

Query: 136 ------TSDC---------------------SESLSLFSEMRLLGMKHDVVSFMGAISAC 168
                  S C                     +++L L S+MR  G+  D V+ +  + AC
Sbjct: 267 ELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGAC 326

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
           +++ AI+ GKEIHG TIR + H    V N+++  Y R   I  A  +F     K   +WN
Sbjct: 327 SHIGAIRLGKEIHGFTIRHYHHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWN 386

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QA 287
           +++ G   LG V+ A+ LF  +   GV  D V++ +IL  C+    ++ G+++   + + 
Sbjct: 387 SMLSGLTHLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITKH 446

Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAW 347
              +   + +  +VD+  RAG + +A ++  +L  + D   + +L+    + G       
Sbjct: 447 RDFRDHLLLWNALVDMYARAGKVSEAKRIFYSLS-KKDEVTYTSLIAGYGMQGEGGKAVR 505

Query: 348 AAEHL--FMLKPQHCGYYILLS 367
             E +  F +KP H     +LS
Sbjct: 506 LFEEMKRFQIKPDHITMIAVLS 527



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 141/272 (51%), Gaps = 23/272 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQ-NRLELKALQLVREMPIHNEFPNSV 59
           MYA+      A  LF    +K+ ++WN+M++      R+E +AL L RE+ +    P+ V
Sbjct: 360 MYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVE-EALCLFRELLLFGVEPDYV 418

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
           T  ++LP CAR   L+ G+E H  I + +     L L NAL DMYA+ G ++ A+ +F +
Sbjct: 419 TFASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSEAKRIFYS 478

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +S +DEV+Y  LI GY    +  +++ LF EM+   +K D ++ +  +SAC++   + Q 
Sbjct: 479 LSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAVLSACSHSGLVNQA 538

Query: 178 -------KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNT 229
                  + +HG++ R   +        + D + R G ++ A +I   +P +  SA W T
Sbjct: 539 ELLFAEMQSVHGLSPRLEHYA------CMADLFGRVGLLNKAKEIITRMPYRPTSAIWAT 592

Query: 230 LILGYGMLGEVD----TAINLFEAMREDGVGY 257
           LI    + G +D     A  L E MR +  GY
Sbjct: 593 LIGACCIHGNMDIGEWAAEKLLE-MRPEHSGY 623



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 108/429 (25%), Positives = 175/429 (40%), Gaps = 80/429 (18%)

Query: 31  ANFAQNRLELKALQLVREMPIHNEFPNSV--TLTNVLPACARGHFLRPGKEIHARIIRKG 88
           A+  Q     +A  L++    +N+  + +  +++ +L +C +   L PGK++H  II  G
Sbjct: 50  ASHGQLSKSFEAFSLIQLRTSYNDSFDLILQSISILLVSCTKSSSLPPGKQLHGHIISSG 109

Query: 89  LNFDLFLTNALTDMYAKCGCLNLAQNVFNIS--FRDEVSYNILIVGYSQTSDCSESLSLF 146
           L  D FL + L   Y+    L  A  +   S  FR   S+NILI  Y +      ++  +
Sbjct: 110 LVEDSFLVSKLVMFYSSLEFLPEAHTLVETSNLFR-PCSWNILITSYVKHKLYEAAILAY 168

Query: 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
            +M   G++ D  +F   + AC     +K G E+H           LFV N+++  Y R 
Sbjct: 169 KQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMYGRC 228

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA----------------- 249
           G +D A  +FD +  +D+ SWN++I  Y   G    A  LFE+                 
Sbjct: 229 GEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIA 288

Query: 250 ------------------MREDGVGYDPVSYIAILTACSHGGLVEKGK-------KYFDE 284
                             MR  G+  D V+ I  L ACSH G +  GK       +++  
Sbjct: 289 GGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHH 348

Query: 285 MQADSVKPTEMHYA------------------------CMVDLLGRAGLMEDAVKLIKNL 320
           M +         YA                         M+  L   G +E+A+ L + L
Sbjct: 349 MLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFREL 408

Query: 321 ---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN----MYAEA 373
               VEPD   + ++L  C    +++ G     H ++ K +    ++LL N    MYA A
Sbjct: 409 LLFGVEPDYVTFASILPLCARVADLQHG--REFHCYITKHRDFRDHLLLWNALVDMYARA 466

Query: 374 GKWDEASKV 382
           GK  EA ++
Sbjct: 467 GKVSEAKRI 475


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/423 (35%), Positives = 251/423 (59%), Gaps = 16/423 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A  +F  I  K++VSWNA+++ +A      +AL L +EM   N  P+  T+
Sbjct: 179 YASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTM 238

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             V+ ACA+   ++ G+++H+ I   GL  +L + NAL D+Y+KCG +  A  +F  +S 
Sbjct: 239 VTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSN 298

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D +S+N +I GY+  +   E+L LF EM   G   + V+ +  + ACA L AI  G+ I
Sbjct: 299 KDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWI 358

Query: 181 H--------GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           H        GVT    L T      S++D Y + G I+ A+++F+ +  +  ++ N +I 
Sbjct: 359 HVYIDKRIKGVTNASSLRT------SLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIF 412

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVK 291
           G+ M G  + A ++F  MR++G+  D ++++ +L+ACSH G+++ G++ F  M Q   + 
Sbjct: 413 GFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKIT 472

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
           P   HY CM+DLLG  GL ++A ++I  + +EPD  IW +LL AC+++GNVELG   A+ 
Sbjct: 473 PKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQK 532

Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           L  ++P++ G Y+LLSN+YA AG+W+E + +R L+  +  KK PGCS ++    V +F++
Sbjct: 533 LIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFII 592

Query: 412 NDR 414
            D+
Sbjct: 593 GDK 595



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 178/400 (44%), Gaps = 68/400 (17%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  I E N++ WN M    A +   + A++L   M      PNS T   +L +CA+   
Sbjct: 59  VFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKV 118

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
            + G++IH  +++ G   DL++  +L  MY K G    A  VF+                
Sbjct: 119 SKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITG 178

Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
                           I  +D VS+N +I GY+ T +  E+L LF EM    +K D  + 
Sbjct: 179 YASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTM 238

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           +  +SACA   +I+ G+++H       L ++L + N+++D Y++ G ++ A  +F  L  
Sbjct: 239 VTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSN 298

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-- 279
           KD  SWNT+I GY  L     A+ LF+ M   G   + V+ ++IL AC+  G ++ G+  
Sbjct: 299 KDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWI 358

Query: 280 -KYFDE-----MQADSVKPT-------------------EMHY----ACMVDLL-----G 305
             Y D+       A S++ +                    MH+    AC   +      G
Sbjct: 359 HVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHG 418

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
           RA    D    ++   +EPD   +  LL AC   G ++LG
Sbjct: 419 RANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLG 458



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 133/297 (44%), Gaps = 36/297 (12%)

Query: 74  LRPGKEIHARIIRKGL---NFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
           L+  + IHA++I+ GL   N+ L        +      L  A +VF  I   + + +N +
Sbjct: 15  LQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTM 74

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
             G++ +SD   ++ L+  M  LG+  +  +F   + +CA L   K+G++IHG  ++   
Sbjct: 75  FRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGY 134

Query: 190 HTHLFVANSILDFYTRSGR-------------------------------IDLANKIFDC 218
              L+V  S++  Y ++GR                               I+ A K+FD 
Sbjct: 135 ELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDE 194

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +PVKD  SWN +I GY   G    A++LF+ M +  V  D  + + +++AC+  G ++ G
Sbjct: 195 IPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLG 254

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++    +    +         ++DL  + G +E A  L + L    D   W  ++G 
Sbjct: 255 RQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLS-NKDVISWNTMIGG 310


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 239/416 (57%), Gaps = 6/416 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            Y+   +   A  +F  +  +++VSW  +++ + +  L  +A+ L  +M +    PN  T
Sbjct: 149 FYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMDV---VPNVAT 205

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL AC R  +L  GK +H  + ++     L + NAL DMY KC CL  A+ +F+ + 
Sbjct: 206 FVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELP 265

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  +I G  Q     +SL LF +M++ G++ D +     +SACA+L A+  G+ 
Sbjct: 266 DRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRW 325

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +     R+ +   + +  +++D Y + G I++A  IF+ +P ++  +WN L+ G  M G 
Sbjct: 326 VQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGH 385

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM--QADSVKPTEMHY 297
              A+  FE M   G+  + V+++AILTAC H GLV +G+ YF +M  Q  +  P   HY
Sbjct: 386 GHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHY 445

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CM+DLL RAGL+++A K I+N+P+ PD  IWGALL AC+  GNVEL      HL  LK 
Sbjct: 446 GCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLELKS 505

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           Q  G Y+LLSN+YA   +WD+ ++VR LMK +  +K PG S ++   E  +F+V D
Sbjct: 506 QDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEVDGEAHEFLVGD 561



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 167/322 (51%), Gaps = 11/322 (3%)

Query: 24  VSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACARGHFLRPGKEIHA 82
           + +N ++A +A +    KA  LV    + N F P+  T   VL AC +   ++ G+++H 
Sbjct: 71  LPYNTLIAAYASS-CTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHG 129

Query: 83  RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSE 141
             ++ G   DL++ N+L   Y+ CG    A  VF+ +  RD VS+  LI GY +T    E
Sbjct: 130 VAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDE 189

Query: 142 SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201
           +++LF +M ++    +V +F+  + AC  +  +  GK +HG+  ++     L V N+++D
Sbjct: 190 AINLFLKMDVVP---NVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVD 246

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y +   +  A K+FD LP +D  SW ++I G     +   ++ LF  M+  GV  D + 
Sbjct: 247 MYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRII 306

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
             ++L+AC+  G ++ G+   + ++   ++        +VD+  + G +E A+ +   + 
Sbjct: 307 LTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGI- 365

Query: 322 VEPDANI--WGALLGACRIYGN 341
             P+ NI  W ALLG   ++G+
Sbjct: 366 --PNRNIFTWNALLGGLAMHGH 385



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 155/351 (44%), Gaps = 45/351 (12%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK-CGCLNLAQNVFNIS--F 120
           +L +  R   +R  K+IHA +I  GL  D F+ + +++ + K  G ++ A +  N +   
Sbjct: 8   LLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLH 67

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
              + YN LI  Y+ +     +  ++  +   G   D+ +F   + AC     +++G+++
Sbjct: 68  VGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQV 127

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HGV ++      L+V NS+L FY+  G+   A ++FD + V+D  SW  LI GY   G  
Sbjct: 128 HGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLF 187

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           D AINLF  M    V  +  +++++L AC   G +  GK     +   +     +    +
Sbjct: 188 DEAINLFLKMD---VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNAL 244

Query: 301 VDLLGRAGLMEDAVKLIKNLP----------------------------------VEPDA 326
           VD+  +   + +A KL   LP                                  VEPD 
Sbjct: 245 VDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDR 304

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQ---HCGYYILLSNMYAEAG 374
            I  ++L AC   G ++ G W  E++     +   H G    L +MYA+ G
Sbjct: 305 IILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIG--TALVDMYAKCG 353


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 146/417 (35%), Positives = 242/417 (58%), Gaps = 4/417 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K     +A  +   + EKN+VSW AM++ ++Q     +AL +  EM   +  PN  T 
Sbjct: 96  YGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTF 155

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL +C R   L  GK+IH  I++   +  +F+ ++L DMYAK G +  A+ +F  +  
Sbjct: 156 ATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPE 215

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VS   +I GY+Q     E+L +F  ++  GM+ + V++   ++A + LA +  GK+ 
Sbjct: 216 RDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQA 275

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   +R+ L  +  + NS++D Y++ G +  A ++FD +P + + SWN +++GY   G  
Sbjct: 276 HCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLG 335

Query: 241 DTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS--VKPTEMHY 297
              + LF  MR E  V  D V+ +A+L+ CSHG + + G   +D M A    +KP   HY
Sbjct: 336 REVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHY 395

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C+VD+LGRAG +++A + IK +P +P A + G+LLGACR++ +V++G +    L  ++P
Sbjct: 396 GCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEP 455

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           ++ G Y++LSN+YA AG+W++ + VR +M  +   K PG SW+Q    +  F  NDR
Sbjct: 456 ENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDR 512



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 151/271 (55%), Gaps = 2/271 (0%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L AC     LR G+ +HA +I+       +L   L   Y KC CL  A+ V + +  ++
Sbjct: 57  LLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 116

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            VS+  +I  YSQT   SE+LS+F+EM     K +  +F   +++C   + +  GK+IHG
Sbjct: 117 VVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHG 176

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
           + ++ +  +H+FV +S+LD Y ++G+I+ A +IF+CLP +D  S   +I GY  LG  + 
Sbjct: 177 LIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEE 236

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
           A+ +F+ ++ +G+  + V+Y ++LTA S   L++ GK+    +    +    +    ++D
Sbjct: 237 ALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLID 296

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +  + G +  A +L  N+P E  A  W A+L
Sbjct: 297 MYSKCGNLSYAQRLFDNMP-ERTAISWNAML 326



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 4/237 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+ +  EA  +F  + E+++VS  A++A +AQ  L+ +AL++ + +      PN VT
Sbjct: 196 MYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVT 255

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             ++L A +    L  GK+ H  ++R+ L F   L N+L DMY+KCG L+ AQ +F N+ 
Sbjct: 256 YASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMP 315

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMR-LLGMKHDVVSFMGAISACANLAAIKQGK 178
            R  +S+N ++VGYS+     E L LF  MR    +K D V+ +  +S C++      G 
Sbjct: 316 ERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGL 375

Query: 179 EIHG--VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
            I+   V     +         I+D   R+GRID A +    +P K +A     +LG
Sbjct: 376 SIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLG 432



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 86/175 (49%), Gaps = 2/175 (1%)

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           EM +LG +     +   ++AC +  A+++G+ +H   I+       ++   +L FY +  
Sbjct: 41  EMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCD 100

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF-EAMREDGVGYDPVSYIAIL 266
            ++ A K+ D +P K+  SW  +I  Y   G    A+++F E MR DG   +  ++  +L
Sbjct: 101 CLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKP-NEFTFATVL 159

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
           T+C     +  GK+    +   +        + ++D+  +AG +E+A ++ + LP
Sbjct: 160 TSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLP 214


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 152/415 (36%), Positives = 242/415 (58%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M AK      A  LF+ + E++ VSW+ M+  F +N    +  Q  RE+      P++ +
Sbjct: 44  MCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFS 103

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  V+ AC     L  G+ IH+ +++ GL+ D F+ + L DMYAKCG ++ A+ +F+ + 
Sbjct: 104 LPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMP 163

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V+  ++I GY++    +ES  LF +MR  G   D V+ +  ++ACA L A+ + + 
Sbjct: 164 KKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARL 223

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H     +     + +  +++D Y + G ID + +IFD +  K+  SW+ +I  YG  G+
Sbjct: 224 VHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQ 283

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LF  M   G+  + +++I++L ACSH GLV+ G + F  M     V+P   HY 
Sbjct: 284 GREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYT 343

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAG ++ A++LI+N+ VE D  IW A LGACRI+  V+L   AA+ L  L+ Q
Sbjct: 344 CMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQ 403

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + G+YILLSN+YA AG+W + +K+R LM  R  KK PG +W++  + +  F   D
Sbjct: 404 NPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGD 458



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 136/279 (48%), Gaps = 5/279 (1%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           K++HA++   G+  DL + N L  M AK   L  A  +FN +  RD VS++++I G+ + 
Sbjct: 20  KQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKN 79

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
            D       F E+   G K D  S    I AC +   +  G+ IH   ++  LH   FV 
Sbjct: 80  GDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVC 139

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           ++++D Y + G ID A ++FD +P KD  +   +I GY   G+ + +  LF+ MR DG  
Sbjct: 140 STLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFV 199

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            D V+ + I+ AC+  G + K +   D + A            M+D+  + G ++ + ++
Sbjct: 200 PDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREI 259

Query: 317 IKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
              +  + +   W A++GA   YG    G  A E   M+
Sbjct: 260 FDRME-QKNVISWSAMIGA---YGYHGQGREALELFHMM 294



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 69/161 (42%), Gaps = 3/161 (1%)

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           F+  +  C N+  IKQ   +H       +   L VAN +L    +   +  A+ +F+ + 
Sbjct: 6   FISTLFKCRNIFQIKQ---VHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKME 62

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            +D  SW+ +I G+   G+ +     F  +   G   D  S   ++ AC     +  G+ 
Sbjct: 63  ERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRL 122

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
               +  + +       + +VD+  + G++++A +L   +P
Sbjct: 123 IHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMP 163


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 242/414 (58%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F+ +A  ++VS+NAM+  +++     +AL L REM +    P  + 
Sbjct: 387 MYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLI 446

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L   A  + L    +IH  II+ G++ D F  +AL D+Y+KC  +  A+ VF  I 
Sbjct: 447 FVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQ 506

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V +  +  GY+Q S+  ESL L+  +++  +K +  +F   I+A +N+A+++ G++
Sbjct: 507 DKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQ 566

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   I+       FVAN+++D Y +SG I+ A+K F     KD+A WN++I  Y   GE
Sbjct: 567 FHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGE 626

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ +FE M  +G+  + V+++ +L+ACSH GL++ G  +FD M    ++P   HY C
Sbjct: 627 AEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMSQFGIEPGIEHYVC 686

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MV LLGRAG + +A + I+ +P++  A +W +LL ACR+ GNVELG +AAE      P  
Sbjct: 687 MVSLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSACRVSGNVELGTYAAEMAISCNPAD 746

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G Y+LLSN++A  G W    ++RE M      K PGCSW++  +E+  F+  D
Sbjct: 747 SGSYVLLSNIFASKGMWVNVRRLREKMDISGVVKEPGCSWIEVNNEIHKFIAKD 800



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 165/334 (49%), Gaps = 3/334 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL-VREMPIHNEFPNSVT 60
           Y+K +    A+ LF  ++ KN+V+W++MV+ +  +   L+AL L V+ M   NE PN   
Sbjct: 84  YSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYI 143

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+ AC +   L P  +IH  +++ G   D+++  +L D Y K  C++ A+ +F+ + 
Sbjct: 144 LASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQ 203

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +   ++  +I GYS+      SL LF +M+   +  D       +SAC  L  ++ GK+
Sbjct: 204 VKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQ 263

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +R  +   + + N  +DFY +  ++ L  K+FD +  K+  SW T+I G      
Sbjct: 264 IHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSF 323

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A++LF  M   G   D     ++L +C     +EKG++        ++   +     
Sbjct: 324 HRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNG 383

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           ++D+  +   + DA K+  NL    D   + A++
Sbjct: 384 LIDMYAKCDSLTDARKVF-NLMAAIDLVSYNAMI 416



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 162/335 (48%), Gaps = 2/335 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K +   +A  LF  +  K   +W  ++A +++      +L+L  +M   +  P+   L
Sbjct: 186 YTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVL 245

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           ++VL AC    FL  GK+IH  ++R G+  D+ + N   D Y KC  + L + +F+ +  
Sbjct: 246 SSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVD 305

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ VS+  +I G  Q S   ++L LF EM  +G   D       +++C +L A+++G+++
Sbjct: 306 KNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQV 365

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   I+ ++    FV N ++D Y +   +  A K+F+ +   D  S+N +I GY    ++
Sbjct: 366 HAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKL 425

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A++LF  MR        + ++++L   +    +E   +    +    V   E   + +
Sbjct: 426 CEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSAL 485

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +D+  +   + DA +L+     + D  +W A+   
Sbjct: 486 IDVYSKCSRVGDA-RLVFEEIQDKDIVVWTAMFSG 519



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 124/246 (50%), Gaps = 13/246 (5%)

Query: 38  LELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLN-FDLFLT 96
           LE +   ++ +  I  E  N +   ++ P C         K+IH++I+  G +  D+FL 
Sbjct: 28  LEPRIPPIIEQRKIGRELANLLQSPHI-PCC---------KKIHSKIVVFGFHKHDIFLV 77

Query: 97  NALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSE-MRLLGM 154
           N L   Y+K   +N A  +F+ +S ++ V+++ ++  Y+  S C E+L LF + MR    
Sbjct: 78  NTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNE 137

Query: 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANK 214
           K +       + AC     +    +IHG+ ++      ++V  S++DFYT+   ID A  
Sbjct: 138 KPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARL 197

Query: 215 IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL 274
           +FD L VK S +W T+I GY   G    ++ LF+ M+E  V  D     ++L+AC     
Sbjct: 198 LFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKF 257

Query: 275 VEKGKK 280
           +E GK+
Sbjct: 258 LEGGKQ 263


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/415 (36%), Positives = 231/415 (55%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K   P  +  +F      N+V W +++ N AQN    +AL+   E  +   FP+ V 
Sbjct: 292 MYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVI 351

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L   L AC+       G  IH   I+ G + D+F+  AL D Y KCG +  AQ VF  +S
Sbjct: 352 LLAALRACSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLS 411

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N LI G++Q     E+L  F +M+   +K + V+    +S C +L+ +   KE
Sbjct: 412 TRDLVSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKE 471

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +R    T+  V NS++  Y + G I  +  +F+ LPV++  +WN+++LG+GM G 
Sbjct: 472 VHCYLLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGR 531

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            D     FE M+E  +  D  ++ ++L++CSH G V+ G KYF+ M  D +++P    Y 
Sbjct: 532 TDEMFATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYT 591

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAG +  A  LI ++P  PD  IWG+LL +C+ +GN +L    A H+F L   
Sbjct: 592 CMVDLLGRAGNLNQAYDLIMSMPCSPDDRIWGSLLASCKNHGNTKLAEVVANHIFELDAS 651

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             GY +LL+N+Y ++G  +E  +VR  +K    KK PGCSW++  + +  FV  D
Sbjct: 652 SVGYRVLLANLYEDSGNLNEVFRVRTDIKQMGLKKQPGCSWIEVDNSIHIFVAGD 706



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 157/341 (46%), Gaps = 9/341 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM--PIHNEFPNS 58
           MY K      A  +F  + E++ VSWN M++ F Q+   +K+L + R M       + N 
Sbjct: 83  MYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNR 142

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           V     L +CA    L  G EIH  +++KG++ D FL +AL +MY KCG +  A+NVF  
Sbjct: 143 VACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFER 202

Query: 118 -----ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
                +  R+   +N++I+GY      S +L LF EM  LG+  D  + +  +  C+ L 
Sbjct: 203 IRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLL 262

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
            +  GK+IHG+ +   L   + V  ++++ Y + G  + + +IF      +   W +++L
Sbjct: 263 DLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVML 322

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
                G  + A+  F     D    DPV  +A L ACS   L  +G              
Sbjct: 323 NCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDS 382

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                  +VD  G+ G ME A ++   L    D   W AL+
Sbjct: 383 DVFVGGALVDFYGKCGDMEYAQQVFYGLSTR-DLVSWNALI 422



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 113/206 (54%), Gaps = 8/206 (3%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           +  GK+IH  +++ G   D+F+ N+L  MY KCG    A ++F  +  RD VS+N +I G
Sbjct: 55  VNKGKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISG 114

Query: 133 YSQTSDCSESLSLFSEM--RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH 190
           + Q+ D  +SL +F  M     G  H+ V+ + A+S+CA++  +  G EIHG  ++K + 
Sbjct: 115 FCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVD 174

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDC-----LPVKDSASWNTLILGYGMLGEVDTAIN 245
           +  F+ +++++ Y + G I  A  +F+      L  ++ A WN +ILGY     +  A+ 
Sbjct: 175 SDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALE 234

Query: 246 LFEAMREDGVGYDPVSYIAILTACSH 271
           LF  M E G+  D  + + +L  CS 
Sbjct: 235 LFVEMLELGISPDSSTVVVVLVLCSQ 260



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 13/127 (10%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           I A   L  + +GK+IHG  ++      +FV NS+L  Y + G    A  +F+ +  +DS
Sbjct: 46  IKAFGGLYDVNKGKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDS 105

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMRED--GVGYDPVSYIAILTACS-----------H 271
            SWNT+I G+   G+   ++ +F  M ++  G  ++ V+ +A L++C+           H
Sbjct: 106 VSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIH 165

Query: 272 GGLVEKG 278
           G LV+KG
Sbjct: 166 GFLVKKG 172


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/405 (37%), Positives = 240/405 (59%), Gaps = 3/405 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A +LF  I + N+  WN ++  +A N     A+ L  +M  +   P++ TL  VL AC+ 
Sbjct: 112 AHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSA 171

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              +  G+ IH R+IR G   D+F+  AL DMYAKCGC+  A++VF+ I  RD V +N +
Sbjct: 172 LSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSM 231

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           +  Y+Q     ESLSL  EM   G++    + +  IS+ A++A +  G+EIHG   R   
Sbjct: 232 LAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGF 291

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             +  V  +++D Y + G + +A  +F+ L  K   SWN +I GY M G    A++LFE 
Sbjct: 292 QYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFER 351

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYACMVDLLGRAG 308
           M ++    D ++++  L ACS G L+++G+  ++ M  D  + PT  HY CMVDLLG  G
Sbjct: 352 MMKEAQP-DHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCG 410

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
            +++A  LI+ + V PD+ +WGALL +C+ +GNVEL   A E L  L+P   G Y++L+N
Sbjct: 411 QLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILAN 470

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           MYA++GKW+  +++R+LM  +  KKN  CSW++ +++V  F+  D
Sbjct: 471 MYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGD 515



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 147/304 (48%), Gaps = 7/304 (2%)

Query: 42  ALQLVREMPIHNEFPNSVT----LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTN 97
           A QL+ +  + + FP+S +      ++L +C     L PGK++HAR+ + G+ ++L L  
Sbjct: 39  ATQLIPQHKV-DSFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLAT 97

Query: 98  ALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH 156
            L + Y+ C  L  A ++F+ I   +   +N+LI  Y+       ++SL+ +M   G+K 
Sbjct: 98  KLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKP 157

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
           D  +    + AC+ L+ I +G+ IH   IR      +FV  +++D Y + G +  A  +F
Sbjct: 158 DNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVF 217

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
           D +  +D+  WN+++  Y   G  D +++L   M   GV     + + ++++ +    + 
Sbjct: 218 DKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLP 277

Query: 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
            G++          +  +     ++D+  + G ++ A  L + L  E     W A++   
Sbjct: 278 HGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLR-EKRVVSWNAIITGY 336

Query: 337 RIYG 340
            ++G
Sbjct: 337 AMHG 340



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 129/257 (50%), Gaps = 8/257 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A ++F  I +++ V WN+M+A +AQN    ++L L  EM      P   T
Sbjct: 203 MYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEAT 262

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  V+ + A    L  G+EIH    R G  ++  +  AL DMYAKCG + +A  +F  + 
Sbjct: 263 LVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLR 322

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N +I GY+      E+L LF  M +   + D ++F+GA++AC+    + +G+ 
Sbjct: 323 EKRVVSWNAIITGYAMHGLAVEALDLFERM-MKEAQPDHITFVGALAACSRGRLLDEGRA 381

Query: 180 IHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIF---DCLPVKDSASWNTLILGYG 235
           ++ + +R   ++  +     ++D     G++D A  +    D +P  DS  W  L+    
Sbjct: 382 LYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMP--DSGVWGALLNSCK 439

Query: 236 MLGEVDTAINLFEAMRE 252
             G V+ A    E + E
Sbjct: 440 THGNVELAEVALEKLIE 456


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 160/446 (35%), Positives = 243/446 (54%), Gaps = 34/446 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+      A  +F   ++K++V+W  M+  +A +    +A+++   M + +  PN VTL
Sbjct: 302 YAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTL 361

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---- 117
             V+ AC+    L  GK +H ++  K +   L L NAL DMY KC CL  A+ +F+    
Sbjct: 362 IAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMAT 421

Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                          ++ V ++ +I GYSQ +   ESL LF EM
Sbjct: 422 KDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEM 481

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHG-VTIRKHLHTHLFVANSILDFYTRSGR 208
              G+     + +  +SAC  L  +  G  IH    + K +   + + N+I+D Y + G 
Sbjct: 482 MERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGS 541

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           ID A ++F  +P ++  SWNT+I GY   G    AIN+F+ MR  G   + ++++++LTA
Sbjct: 542 IDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTA 601

Query: 269 CSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           CSHGGL+ +G++YFD M+    +KP   HYACMVDLLGR GL+E+A KLI N+P++P   
Sbjct: 602 CSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEA 661

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
            WGALL ACR++GNVEL   +A +L  L P+  G Y+LL+N  A   KW +  +VR LMK
Sbjct: 662 AWGALLNACRMHGNVELARLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMK 721

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVND 413
            +  KK PG S ++      +F+V D
Sbjct: 722 DKGVKKIPGYSLIEIDGGFVEFLVAD 747



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 168/383 (43%), Gaps = 41/383 (10%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F+ + + N   WN M+  +   R  + A      M       +S +    L AC +
Sbjct: 210 AHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQ 269

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF-RDEVSYNIL 129
              +  G+ ++  + + G + +L + N L   YA+ G L  A+ VF+ S  +D V++  +
Sbjct: 270 FETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTM 329

Query: 130 IVGYSQTSDCSE-SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           I GY+   DCSE ++ +F  M L  ++ + V+ +  +SAC+++  ++ GK +H     K+
Sbjct: 330 IDGYA-AHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKN 388

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           +   L + N++LD Y +   +  A ++FD +  KD  SW +++ GY   G++++A   F+
Sbjct: 389 MRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFD 448

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
                    + V + A++   S     ++  K F EM    V P E              
Sbjct: 449 QTPRK----NAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIE-------------- 490

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK--PQHCGYYILL 366
                             +   ++L AC     + LG W  ++  + K  P        +
Sbjct: 491 ------------------HTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAI 532

Query: 367 SNMYAEAGKWDEASKVRELMKSR 389
            +MYA+ G  D A++V   M  R
Sbjct: 533 VDMYAKCGSIDAATEVFSTMPER 555



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 150/326 (46%), Gaps = 16/326 (4%)

Query: 40  LKALQLVREMPIHNEFPNSVTLTN----VLPACARGHFLRPGKEIHARIIRKGLNFDLFL 95
           +K        P  N  P +V +TN    ++ +C+    +R  K+I AR+   G+    F 
Sbjct: 136 IKPFSFTTNKPKWNS-PTNVIITNPTLLIMESCST---MRQLKQIQARMTLTGIITHAFP 191

Query: 96  TNALTDM--YAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL 152
            + +      A  G L+ A  +FN +   +   +N +I GY        + S F  M  L
Sbjct: 192 VSRVIAFCALAHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQL 251

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
            ++ D  SF+ A+ AC     + +G+ ++ V  +      L V N ++ FY   G +  A
Sbjct: 252 RVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNA 311

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
            ++FD    KD  +W T+I GY      + A+ +FE M    V  + V+ IA+++ACS  
Sbjct: 312 RQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDM 371

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
           G +E GK+  ++++  +++ +   +  ++D+  +   + DA +L   +  + D   W ++
Sbjct: 372 GNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATK-DVYSWTSM 430

Query: 333 LGACRIYGNVELGAWAAEHLFMLKPQ 358
           +      G++E    +A   F   P+
Sbjct: 431 VNGYAKCGDLE----SARRFFDQTPR 452



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A+ +F  + E+N++SWN M+A +A N    +A+ +  +M      PN++T
Sbjct: 535 MYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNIT 594

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLA 112
             ++L AC+ G  +  G+E    + RK G+  +      + D+  + G L  A
Sbjct: 595 FVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEA 647


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/419 (37%), Positives = 255/419 (60%), Gaps = 6/419 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F+ +  ++IVSWN+++A F QN+  + AL +  +M      P+ +T
Sbjct: 284 MYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLT 343

Query: 61  LTNVLPACAR-GHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN- 117
           L ++    A  G+FL   + IH  + R+     D+ L NA+ DMYAK G ++ A+ VF  
Sbjct: 344 LVSLASVAAELGNFL-SSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEG 402

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAAIKQ 176
           +  +D +S+N LI GYSQ    +E++ ++S MR   G   +  +++  ++A + L A+KQ
Sbjct: 403 LPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQ 462

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G + HG  I+  L+  +FV+  ++D Y + G++  A  +F  +P + S SWN +I  +G+
Sbjct: 463 GMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGL 522

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G    A+ LF+ M+ +GV  D ++++++L+ACSH GLV++G+  F  MQ    ++P+  
Sbjct: 523 HGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLK 582

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY CMVDL GRAG +E A   +KN+PV PD ++WGALLGACRI+ NVEL    ++HL  +
Sbjct: 583 HYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKV 642

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + ++ GYY+LLSN+YA+ G W+   +VR L + R  KK PG S ++   ++  F   ++
Sbjct: 643 ESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQ 701



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/410 (31%), Positives = 216/410 (52%), Gaps = 19/410 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            Y++    + A  LF N+  ++I +WNAM++ F  N    +AL++  EM   +   +SVT
Sbjct: 183 FYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVT 242

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++++LP C +   +  G  IH   I+ GL FDLF+ NAL +MYAK G L  A+ +FN + 
Sbjct: 243 ISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMK 302

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N L+  + Q      +L ++++M  +G+  D+++ +   S  A L      + 
Sbjct: 303 VRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRS 362

Query: 180 IHGVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           IHG   R+    H + + N+I+D Y + G ID A K+F+ LPVKD  SWN+LI GY   G
Sbjct: 363 IHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNG 422

Query: 239 EVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
             + AI+++ +MR   G   +  ++++ILTA S  G +++G K   ++  + +       
Sbjct: 423 LANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVS 482

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--- 354
            C+VD+ G+ G + DA+ L   +P +   + W A++    ++G        A  LF    
Sbjct: 483 TCLVDMYGKCGKLADALSLFYEVPHQSSVS-WNAIISCHGLHGY----GLKAVKLFKEMQ 537

Query: 355 ---LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS----REAKKNPGC 397
              +KP H  +  LLS   + +G  DE     +LM+     R + K+ GC
Sbjct: 538 SEGVKPDHITFVSLLSAC-SHSGLVDEGQWCFQLMQETYGIRPSLKHYGC 586



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 161/337 (47%), Gaps = 11/337 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS--V 59
           YA       A   F  I  K++ +WN+M++ +A+      A+    E  +   F  S   
Sbjct: 85  YAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEF-LSTSFLQSDHY 143

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T   V+ AC     L  G+++H  +++ G   D+++  +    Y++ G ++LA N+F N+
Sbjct: 144 TFPPVIRACGN---LDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNM 200

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD  ++N +I G+      +E+L +F EMR   +  D V+    +  C  L  I  G 
Sbjct: 201 MIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGV 260

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH   I+  L   LFV N++++ Y + G +  A  IF+ + V+D  SWN+L+  +    
Sbjct: 261 LIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNK 320

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG--LVEKGKKYFDEMQADSVKPTEMH 296
           +   A+ ++  M   GV  D ++ +++ +  +  G  L  +    F   +   +    + 
Sbjct: 321 KPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALG 380

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            A ++D+  + G ++ A K+ + LPV+ D   W +L+
Sbjct: 381 NA-IIDMYAKLGFIDSARKVFEGLPVK-DVISWNSLI 415



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 112/221 (50%), Gaps = 9/221 (4%)

Query: 51  IHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN 110
           + NE    +    +   C + H     K++HA ++  G    +FL+  L + YA  G + 
Sbjct: 37  VENE-KREIDFNRIFLYCTKVHL---AKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIP 92

Query: 111 LAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISAC 168
            A+  F+ I  +D  ++N +I  Y++      ++  F+E +    ++ D  +F   I AC
Sbjct: 93  HARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC 152

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
            NL     G+++H + ++      +++A S + FY+R G + LA  +FD + ++D  +WN
Sbjct: 153 GNL---DDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWN 209

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
            +I G+ + G+V  A+ +F+ MR   V  D V+  ++L  C
Sbjct: 210 AMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPIC 250


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 146/414 (35%), Positives = 255/414 (61%), Gaps = 2/414 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K      A  +F  + E+++VSWN M+  + +NR+E +AL +  EM       +  T+
Sbjct: 108 YSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTI 167

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
           ++VL AC         K++H   ++  L+ +L++  AL D+YAKCG +N A  VF ++  
Sbjct: 168 SSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQD 227

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  V+++ ++ GY Q+ +  E+L L+   + + ++ +  +    I AC+NLAA+ +GK++
Sbjct: 228 KSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQM 287

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H V  +    +++FVA+S +D Y + G +  +  IF  +  K+   WNT+I G+      
Sbjct: 288 HAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARP 347

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
              + LFE M++DG+  + V++ ++L+ C H GLVE+G+++F  M+    + P  +HY+C
Sbjct: 348 KEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSC 407

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVD+LGRAGL+ +A +LIK++P EP A+IWG+LL +CR+  N+EL   AA+ LF L+P++
Sbjct: 408 MVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPEN 467

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G ++LLSN+YA   +W+E +K R+L++  + KK  G SW+  +D+V  F V +
Sbjct: 468 AGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGE 521



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 141/274 (51%), Gaps = 4/274 (1%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L  CAR   +   K  H + +R  L  D+ L+N L + Y+KCG + LA+ VF+ +  R 
Sbjct: 69  ILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERS 128

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC-ANLAAIKQGKEIH 181
            VS+N +I  Y++    SE+L +F EMR  G K    +    +SAC AN  A+ + K++H
Sbjct: 129 LVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDAL-ECKKLH 187

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
            ++++  L  +L+V  ++LD Y + G I+ A ++F+ +  K S +W++++ GY      +
Sbjct: 188 CLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYE 247

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            A+ L+   +   +  +  +  +++ ACS+   + +GK+    ++           +  V
Sbjct: 248 EALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAV 307

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           D+  + G + ++  +   +  E +  +W  ++  
Sbjct: 308 DMYAKCGSLRESYIIFSEVQ-EKNIELWNTIISG 340



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 129/234 (55%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK     +A  +F ++ +K+ V+W++MVA + Q++   +AL L R     +   N  T
Sbjct: 208 LYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFT 267

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L++V+ AC+    L  GK++HA I + G   ++F+ ++  DMYAKCG L  +  +F+ + 
Sbjct: 268 LSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ 327

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++   +N +I G+++ +   E + LF +M+  GM  + V+F   +S C +   +++G+ 
Sbjct: 328 EKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRR 387

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
              +    + L  ++   + ++D   R+G +  A ++   +P + +AS W +L+
Sbjct: 388 FFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLL 441



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 87/175 (49%), Gaps = 1/175 (0%)

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           F+  +  CA   A+ + K  HG T+R  L   + ++N +++ Y++ G ++LA ++FD + 
Sbjct: 66  FIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGML 125

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            +   SWNT+I  Y        A+++F  MR +G  +   +  ++L+AC       + KK
Sbjct: 126 ERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKK 185

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                   S+         ++DL  + G++ DAV++ +++  +  +  W +++  
Sbjct: 186 LHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQ-DKSSVTWSSMVAG 239


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/417 (36%), Positives = 247/417 (59%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MYAK  R   A  LF  I +K+IV+WNAM+  ++ N    ++   VR+M    +  P+ +
Sbjct: 271 MYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWI 330

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T+ N+LP CA+   +  GK +H   IR G    L L  AL DMY +CG L  A+ +F  +
Sbjct: 331 TMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQM 390

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + R+ +S+N +I  Y++  +  ++++LF ++    +K D  +    + A A LA++++ +
Sbjct: 391 NERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAE 450

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IHG   +  L ++ FV+NSI+  Y + G +  A +IFD +  KD  SWNT+I+ Y + G
Sbjct: 451 QIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHG 510

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               +I LF  MRE G   +  +++++L +CS  GLV +G +YF+ M+ D ++ P   HY
Sbjct: 511 FGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHY 570

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C++DL+GR G ++ A   I+ +P+ P A IWG+LL A R  G+VEL   AAEH+  L+ 
Sbjct: 571 GCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEH 630

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            + G Y+LLSNMYAEAG+W++  +++  MK    +K+ GCS V    +   FV  DR
Sbjct: 631 DNTGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDR 687



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 160/324 (49%), Gaps = 3/324 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           LF N+ + +   WN M+  F  N L   A+     M       ++ T   V+ AC   + 
Sbjct: 82  LFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLYD 141

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           L  G+ +H ++I+ GL+ D+++ N+L  MYAK GC+  A+ VF  +  RD VS+N +I G
Sbjct: 142 LAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISG 201

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y    D   SLS F EM+  G+K D  S +G + AC+    ++ GKEIH   +R  L   
Sbjct: 202 YVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELD 261

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           + V  S++D Y + GR+D A ++FD +  K   +WN +I GY +  +   +      M+E
Sbjct: 262 VMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQE 321

Query: 253 DG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
            G +  D ++ I +L  C+    +  GK        +   P  +    +VD+ G  G ++
Sbjct: 322 GGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLK 381

Query: 312 DAVKLIKNLPVEPDANIWGALLGA 335
            A  L   +  E +   W A++ +
Sbjct: 382 PAECLFGQMN-ERNLISWNAMIAS 404



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 199/405 (49%), Gaps = 17/405 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F  +  +++VSWN+M++ +       ++L   REM       +  +
Sbjct: 170 MYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFS 229

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  +L AC+   FLR GKEIH +++R  L  D+ +  +L DMYAKCG ++ A+ +F+ I+
Sbjct: 230 VIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQIT 289

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-DVVSFMGAISACANLAAIKQGK 178
            +  V++N +I GYS  +   ES +   +M+  G  H D ++ +  +  CA L AI  GK
Sbjct: 290 DKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGK 349

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +HG  IR     HL +  +++D Y   G++  A  +F  +  ++  SWN +I  Y   G
Sbjct: 350 SVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNG 409

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK---YFDEMQADSVKPTEM 295
           E   A+ LF+ +    +  D  +  +IL A +    + + ++   Y  +++ DS      
Sbjct: 410 ENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDS---NTF 466

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG----NVELGAWAAEH 351
               +V + G+ G +  A ++   +  + D   W  ++ A  I+G    ++EL +   E 
Sbjct: 467 VSNSIVFMYGKCGNLLRAREIFDRMTFK-DVISWNTVIMAYAIHGFGRISIELFSEMREK 525

Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPG 396
            F  +P    +  LL +  + AG  +E  +    MK R+   NPG
Sbjct: 526 GF--EPNGSTFVSLLLSC-SVAGLVNEGWEYFNSMK-RDYNINPG 566



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 123/242 (50%), Gaps = 3/242 (1%)

Query: 95  LTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
           LT AL+  Y + G +  A ++F N+   D   +N++I G+       +++  +  M   G
Sbjct: 63  LTRALSS-YVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGG 121

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
           ++ D  ++   I AC  L  + +G+ +HG  I+  L   +++ NS++  Y + G I+ A 
Sbjct: 122 VRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAE 181

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
            +F  +PV+D  SWN++I GY  +G+   +++ F  M+  G+  D  S I IL ACS  G
Sbjct: 182 MVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEG 241

Query: 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            +  GK+   +M    ++   M    +VD+  + G M+ A +L   +  +     W A++
Sbjct: 242 FLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQI-TDKSIVAWNAMI 300

Query: 334 GA 335
           G 
Sbjct: 301 GG 302


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 158/416 (37%), Positives = 247/416 (59%), Gaps = 5/416 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS--V 59
           YA   R  +A  LF  +  ++  SWNA+++ +      ++AL L R M   NE  N    
Sbjct: 139 YANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQ-ENESSNCNMF 197

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL++ L A A    LR GKEIH  +IR GL  D  +  AL D+Y KCG LN A+ +F+ +
Sbjct: 198 TLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQM 257

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + +D VS+  +I    +     E  SLF ++   G++ +  +F G ++ACA+LAA + GK
Sbjct: 258 ADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGK 317

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+HG   R       F A++++  Y++ G  + A ++F+ +P  D  SW +LI+GY   G
Sbjct: 318 EVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNG 377

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
           + D A+  FE++   G   D ++++ +L+AC+H GLV+ G +YF  + +   +  T  HY
Sbjct: 378 QPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHY 437

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           AC++DLL R+G  ++A  +I N+P++PD  +W +LLG CRI+GN+EL   AA+ LF L+P
Sbjct: 438 ACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEP 497

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           ++   YI LSN+YA AG W E +KVR  M +R   K PG SW++ + +V  F+V D
Sbjct: 498 ENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGD 553



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 141/293 (48%), Gaps = 14/293 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     EA  +F  +A+K+IVSW  M+    ++  + +   L R++      PN  T
Sbjct: 240 LYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYT 299

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
              VL ACA     + GKE+H  + R G +   F  +AL  +Y+KCG    A+ VFN   
Sbjct: 300 FAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMP 359

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           R D VS+  LIVGY+Q      +L  F  +   G K D ++F+G +SAC +   +  G E
Sbjct: 360 RPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLE 419

Query: 180 IHGVTIRKH--LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGM 236
                  KH  +HT    A  ++D   RSGR   A  I D +P+K D   W +L+ G  +
Sbjct: 420 YFHSVKEKHGLVHTADHYA-CVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRI 478

Query: 237 LGEVD----TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
            G ++     A  LFE   E     +P +YI +    ++ GL  +  K  ++M
Sbjct: 479 HGNIELAERAAKALFELEPE-----NPATYITLSNIYANAGLWTEETKVRNDM 526



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 150/334 (44%), Gaps = 43/334 (12%)

Query: 35  QNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF--D 92
           QNRL+ +A+  +  +P     P+    + ++ AC R   L  GK +HA    K  NF   
Sbjct: 45  QNRLK-EAVDYLHRIPQ----PSPRLYSTLIAACLRHRKLELGKRVHAHT--KASNFIPG 97

Query: 93  LFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-- 149
           + ++N L  MYAKCG L  AQ +F+ I  +D  S+N +I GY+      ++  LF EM  
Sbjct: 98  IVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPH 157

Query: 150 RLLGMKHDVVS-------FMGAI----------SACANL-------------AAIKQGKE 179
           R     + V+S       +M A+          S+  N+             +++++GKE
Sbjct: 158 RDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKE 217

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  IR  L     V  ++LD Y + G ++ A  IFD +  KD  SW T+I      G 
Sbjct: 218 IHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGR 277

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
                +LF  +   GV  +  ++  +L AC+     + GK+    M      P     + 
Sbjct: 278 KKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASA 337

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +V +  + G  E A ++   +P  PD   W +L+
Sbjct: 338 LVHVYSKCGNTETARRVFNQMP-RPDLVSWTSLI 370



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 94/229 (41%), Gaps = 50/229 (21%)

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED--- 253
           N+++  Y   GRI+ A K+FD +P +D+ SWN +I GY   G    A++LF  M+E+   
Sbjct: 133 NTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESS 192

Query: 254 ---------------------------------GVGYDPVSYIAILTACSHGGLVEKGKK 280
                                            G+  D V + A+L      G + + + 
Sbjct: 193 NCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARG 252

Query: 281 YFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGAC 336
            FD+M   D V  T M + C  D     G  ++   L ++L    V P+   +  +L AC
Sbjct: 253 IFDQMADKDIVSWTTMIHRCFED-----GRKKEGFSLFRDLMGSGVRPNEYTFAGVLNAC 307

Query: 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLS---NMYAEAGKWDEASKV 382
                 ++G     H +M +  +  +    S   ++Y++ G  + A +V
Sbjct: 308 ADLAAEQMGKEV--HGYMTRVGYDPFSFAASALVHVYSKCGNTETARRV 354


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 157/454 (34%), Positives = 251/454 (55%), Gaps = 38/454 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+   + A  LF N+ E++ VSWN M++ +A   +  +A +L  +M +     N +T
Sbjct: 238 MYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNIIT 297

Query: 61  LTNVLPACAR-GHF----------------------------------LRPGKEIHARII 85
              +   C + G+F                                  ++ G+EIH   I
Sbjct: 298 WNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHGSAI 357

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLS 144
           R   +    + NAL  MY++C  L  A N+F +   ++ +++N ++ GY+      E+  
Sbjct: 358 RSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASF 417

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH-LHTHLFVANSILDFY 203
           LF EM L G++ + V+    +  CA +A ++ GKE H   +R+     +L + NS++D Y
Sbjct: 418 LFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMY 477

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
            RSG++  A ++FD +  +D  ++ +LI GYG+ GE   A+ LF+ M++  +  D V+ +
Sbjct: 478 ARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMV 537

Query: 264 AILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
           A+L+ACSH GLV +G K F+ M  A  + P   H+ACMVDL GRAGL+  A ++I  +P 
Sbjct: 538 AVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPY 597

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382
            P + +W  LLGACRI+GN E+G WAAE L  ++P++ GYY+L++NMYA AG W + +KV
Sbjct: 598 RPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWSKLAKV 657

Query: 383 RELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMK 416
           R  M+    +K PGC+WV        F+V+D  K
Sbjct: 658 RTYMRDLGVRKAPGCAWVDVGSGFFPFLVDDTSK 691



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 195/420 (46%), Gaps = 53/420 (12%)

Query: 16  HNIAE-KNIV---SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARG 71
           H I E  NI+    WN +++++ +N L  +AL   ++M      P+  T  +VL AC   
Sbjct: 148 HTITENSNILHPLPWNLLISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEK 207

Query: 72  HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILI 130
             +  GK++HA I    L ++LF+ N+L  MYAK G L+ A+ +F N+  RD+VS+N +I
Sbjct: 208 LDIAFGKKLHASINASCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMI 267

Query: 131 VGYS-----------------------------------QTSDCSESLSLFSEMRLLGMK 155
            GY+                                   Q+ +  E+L L S MR  G+ 
Sbjct: 268 SGYASKGMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGID 327

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
            D V+ +  + AC+++ AIK G+EIHG  IR        V N+++  Y+R   +  A  +
Sbjct: 328 MDSVATIIGLGACSHIGAIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNL 387

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275
           F     K+  +WN+++ GY  +   + A  LF  M   G+  + V+  +IL  C+    +
Sbjct: 388 FQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANL 447

Query: 276 EKGKKYFDE-MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
           + GK++    ++    K   + +  +VD+  R+G + +A +L  ++    D   + +L+ 
Sbjct: 448 QHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSIS-RRDEVTYTSLIA 506

Query: 335 ACRIYGNVELGAWAAEHLF------MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
              I G        A  LF       +KP H     +LS   + +G   E  K+ ELM S
Sbjct: 507 GYGIQGE----GREALKLFDEMKKRHIKPDHVTMVAVLSAC-SHSGLVTEGIKLFELMPS 561



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 1/215 (0%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVG 132
           L  GK++H  II  G      +   L   Y     L  A  +  N +    + +N+LI  
Sbjct: 109 LSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISS 168

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y +     E+LS + +M   G++ D  ++   + AC     I  GK++H       L  +
Sbjct: 169 YVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWN 228

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           LFV NS++  Y ++G +  A  +F+ +  +D  SWNT+I GY   G    A  LF  MR 
Sbjct: 229 LFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRV 288

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           +G+  + +++  I   C   G  E+  +    M++
Sbjct: 289 EGIELNIITWNTIAGGCVQSGNFEEALELLSHMRS 323



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 12/225 (5%)

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
           NL ++ QGK++H + I      H  +   ++ FYT    +  A+ I +   +     WN 
Sbjct: 105 NLKSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNL 164

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS 289
           LI  Y   G    A++ ++ M   G+  D  +Y ++L AC     +  GKK    + A  
Sbjct: 165 LISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASC 224

Query: 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAW-- 347
           +      +  +V +  + G +  A  L +N+ +E D   W  +     I G    G W  
Sbjct: 225 LGWNLFVHNSLVSMYAKTGELSTARCLFENM-LERDDVSWNTM-----ISGYASKGMWKE 278

Query: 348 AAEHLFMLKPQHCGYYILLSNMYA----EAGKWDEASKVRELMKS 388
           A E    ++ +     I+  N  A    ++G ++EA ++   M+S
Sbjct: 279 AFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRS 323


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/419 (36%), Positives = 244/419 (58%), Gaps = 6/419 (1%)

Query: 1   MYAKSSRPAE---ASYLFHNIAEKNIVSWNAMVANFAQNR-LELKALQLVREMPIHNEFP 56
           MYAK S       A  +F  I + N+ SW AM+  + Q    + +AL L R M + +  P
Sbjct: 315 MYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIP 374

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N  T ++ L ACA    LR G+++    ++ G +    + N+L  MYA+ G ++ A+  F
Sbjct: 375 NHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAF 434

Query: 117 NISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           +I F ++ +SYN +I  Y++  +  E+L LF+E+   GM     +F   +S  A++  I 
Sbjct: 435 DILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIG 494

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           +G++IH   I+  L  +  V N+++  Y+R G I+ A ++F+ +  ++  SW ++I G+ 
Sbjct: 495 KGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFA 554

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
             G    A+ LF  M E+GV  + V+YIA+L+ACSH GLV +G K+F  M  +  V P  
Sbjct: 555 KHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRM 614

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYAC+VD+LGR+G + +A++ I ++P + DA +W   LGACR++GN+ELG  AA+ +  
Sbjct: 615 EHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIE 674

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            +P     YILLSN+YA   KWDE S +R+ MK +   K  GCSWV+  ++V  F V D
Sbjct: 675 QEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGD 733



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 166/327 (50%), Gaps = 10/327 (3%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + E+N V+W  M+    Q     +A+ L  +M      P+  TL+ V+ ACA    
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMEL 286

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC---GCLNLAQNVFNISFRDEV-SYNIL 129
           L  G+++H++ IR GL  D  +   L +MYAKC   G +  A+ +F+      V S+  +
Sbjct: 287 LLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAM 346

Query: 130 IVGYSQTSDC-SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           I GY Q      E+L LF  M L  +  +  +F   + ACANLAA++ G+++    ++  
Sbjct: 347 ITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLG 406

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
             +   VANS++  Y RSGRID A K FD L  K+  S+NT+I  Y      + A+ LF 
Sbjct: 407 FSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFN 466

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            + + G+G    ++ ++L+  +  G + KG++    +    +K  +     ++ +  R G
Sbjct: 467 EIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCG 526

Query: 309 LMEDAVKLIKNLPVEPDANI--WGALL 333
            +E A ++ +++    D N+  W +++
Sbjct: 527 NIESAFQVFEDM---EDRNVISWTSII 550



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 154/323 (47%), Gaps = 8/323 (2%)

Query: 1   MYAKSSRPAEASYLFHNI-AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           +Y+K  +  +A+ +F  + + ++++SW+AMV+ FA N +  +AL    +M  +  +PN  
Sbjct: 110 LYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEY 169

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKC-GCLNLAQNVF- 116
                  AC+   F+  G  I   +I+ G L  D+ +   L DM+ K  G L  A  VF 
Sbjct: 170 CFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFE 229

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  R+ V++ ++I    Q     E++ LF +M   G + D  +  G ISACAN+  +  
Sbjct: 230 KMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLL 289

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTR---SGRIDLANKIFDCLPVKDSASWNTLILG 233
           G+++H   IR  L     V   +++ Y +    G +  A KIFD +   +  SW  +I G
Sbjct: 290 GQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITG 349

Query: 234 YGMLGEVD-TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
           Y   G  D  A++LF  M    V  +  ++ + L AC++   +  G++ F          
Sbjct: 350 YVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSS 409

Query: 293 TEMHYACMVDLLGRAGLMEDAVK 315
                  ++ +  R+G ++DA K
Sbjct: 410 VNCVANSLISMYARSGRIDDARK 432



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 162/391 (41%), Gaps = 47/391 (12%)

Query: 41  KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100
           KA+  +  M      P+  T +  L  C R      G  +H ++ +  L  D    N+L 
Sbjct: 49  KAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLI 108

Query: 101 DMYAKCGCLNLAQNVFNI--SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
            +Y+KCG    A ++F +  S RD +S++ ++  ++  +    +L  F +M   G   + 
Sbjct: 109 SLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNE 168

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRK-HLHTHLFVANSILDFYTRSGRIDL--ANKI 215
             F  A  AC+    +  G  I G  I+  +L + + V   ++D + + GR DL  A K+
Sbjct: 169 YCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVK-GRGDLVSAFKV 227

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275
           F+ +P +++ +W  +I      G    AI+LF  M   G   D  +   +++AC++  L+
Sbjct: 228 FEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELL 287

Query: 276 EKGKKYFDEMQADSVK--------PTEMHYACMVD------------------------- 302
             G++   +     +            M+  C VD                         
Sbjct: 288 LLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMI 347

Query: 303 --LLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFML-- 355
              + + G  E+A+ L + +    V P+   + + L AC     + +G     H   L  
Sbjct: 348 TGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGF 407

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
              +C    L+S MYA +G+ D+A K  +++
Sbjct: 408 SSVNCVANSLIS-MYARSGRIDDARKAFDIL 437


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 244/416 (58%), Gaps = 2/416 (0%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            +Y+KS +  EA +LF N  + ++  WNAM+  +       KAL+L   +    E  + +T
Sbjct: 1050 VYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQIT 1109

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            L     AC     L  GK+IHA  I+ G + DL + + + DMY KCG +  A  VFN IS
Sbjct: 1110 LATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYIS 1169

Query: 120  FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
              D+V++  +I G     +  ++L ++  MR   +  D  +F   I A + + A++QG++
Sbjct: 1170 APDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQ 1229

Query: 180  IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            +H   I+    +  FV  S++D Y + G I+ A ++F  + V++ A WN +++G    G 
Sbjct: 1230 LHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGN 1289

Query: 240  VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
             + A+NLF++M+  G+  D VS+I IL+ACSH GL  +  +Y   M  D  ++P   HY+
Sbjct: 1290 AEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYS 1349

Query: 299  CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            C+VD LGRAGL+++A K+I+ +P +  A+I  ALLGACRI G+VE G   A  LF L+P 
Sbjct: 1350 CLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPF 1409

Query: 359  HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
                Y+LLSN+YA A +WD+ +  R++MK +  KK+PG SW+  ++ +  FVV+DR
Sbjct: 1410 DSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDR 1465



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 179/346 (51%), Gaps = 5/346 (1%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MY+K      A  +F+++   +++SWN+M+++ AQ+ LE +++ L  ++      P+  T
Sbjct: 948  MYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFT 1007

Query: 61   LTNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
            L +VL AC+     L   ++IH   ++ G   D F+   L D+Y+K G +  A+ +F N 
Sbjct: 1008 LASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNK 1067

Query: 119  SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
               D   +N ++ GY   +D  ++L LFS +   G K D ++   A  AC  L  + QGK
Sbjct: 1068 DDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGK 1127

Query: 179  EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +IH   I+    + L V + ILD Y + G +  A  +F+ +   D  +W ++I G    G
Sbjct: 1128 QIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNG 1187

Query: 239  EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK-YFDEMQADSVKPTEMHY 297
              D A+ ++  MR+  V  D  ++  ++ A S    +E+G++ + + ++ D V    +  
Sbjct: 1188 NEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGT 1247

Query: 298  ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            + +VD+  + G +EDA +L K + V   A +W A+L     +GN E
Sbjct: 1248 S-LVDMYAKCGNIEDAYRLFKKMNVRNIA-LWNAMLVGLAQHGNAE 1291



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 155/299 (51%), Gaps = 27/299 (9%)

Query: 57   NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
            ++VTL  VL A A    L  GK++H   ++ GL+ D+ + N+L +MY+K GC   A+ VF
Sbjct: 903  DAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVF 962

Query: 117  N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
            N +   D +S+N +I   +Q+S   ES++LF ++   G+K D  +    + AC++L    
Sbjct: 963  NDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSL---- 1018

Query: 176  QGKEIHGVTIRKHLHTHL---------FVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
                I G+ I + +H H          FVA +++D Y++SG+++ A  +F      D A 
Sbjct: 1019 ----IDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLAC 1074

Query: 227  WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
            WN ++ GY +  +   A+ LF  + + G   D ++      AC    L+++GK    ++ 
Sbjct: 1075 WNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGK----QIH 1130

Query: 287  ADSVKP---TEMHY-ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
            A ++K    +++H  + ++D+  + G M +A  ++ N    PD   W +++  C   GN
Sbjct: 1131 AHAIKAGFDSDLHVNSGILDMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGCVDNGN 1188



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 112/226 (49%), Gaps = 7/226 (3%)

Query: 72  HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNILI 130
           H L  GK  HARI+  G   D FL+N L  MY+KCG L+ A+ VF+ +  RD V++N ++
Sbjct: 635 HNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAIL 694

Query: 131 VGYSQTSDCS-----ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
             Y+ + D +     E L LF  +R        ++    +  C N   +   + +HG  I
Sbjct: 695 GAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAI 754

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
           +  L   +FV+ ++++ Y++ GR+  A  +FD +  +D   WN ++ GY  LG    A  
Sbjct: 755 KIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQ 814

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
           LF      G+  D  S   IL   S     ++GK   D++QA + K
Sbjct: 815 LFSEFHRSGLRPDEFSVQLILNGVSEVNW-DEGKWLADQVQAYAAK 859



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 154/337 (45%), Gaps = 32/337 (9%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            +Y+K  R  +A  LF  + E+++V WN M+  + Q  LE +A QL  E       P+  +
Sbjct: 771  IYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFS 830

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFD--LFLTNALTDMYAKCGCLNLAQNVFNI 118
            +  +L   +                   +N+D   +L + +    AK    +   +VF  
Sbjct: 831  VQLILNGVSE------------------VNWDEGKWLADQVQAYAAKLSLSDDNPDVF-- 870

Query: 119  SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
                   +N  +       D   ++  F  M  L + +D V+ +  ++A A    ++ GK
Sbjct: 871  ------CWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGK 924

Query: 179  EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            ++HG+ ++  L + + VANS+++ Y++ G    A ++F+ +   D  SWN++I       
Sbjct: 925  QVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSS 984

Query: 239  EVDTAINLFEAMREDGVGYDPVSYIAILTACSH--GGLVEKGKKYFDEMQADSVKPTEMH 296
              + ++NLF  +  +G+  D  +  ++L ACS    GL    + +   ++  ++  + + 
Sbjct: 985  LEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFV- 1043

Query: 297  YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
               ++D+  ++G ME+A  L +N   + D   W A++
Sbjct: 1044 ATTLIDVYSKSGKMEEAEFLFQNKD-DLDLACWNAMM 1079



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 126/286 (44%), Gaps = 31/286 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFA-----QNRLELKALQLVREMPIHNEF 55
           MY+K    + A  +F    E+++V+WNA++  +A      +    + L L R +      
Sbjct: 665 MYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGS 724

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
              +TL  VL  C     L   + +H   I+ GL +D+F++ AL ++Y+KCG +  A+ +
Sbjct: 725 TTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLL 784

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ +  RD V +N+++ GY Q     E+  LFSE    G++ D  S    ++  + +   
Sbjct: 785 FDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEV-NW 843

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
            +GK               ++A+ +  +  +    D    +F          WN  +   
Sbjct: 844 DEGK---------------WLADQVQAYAAKLSLSDDNPDVF---------CWNKKLSEC 879

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
              G+   AI  F  M    + YD V+ + +L A +    +E GK+
Sbjct: 880 LWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQ 925


>gi|115462159|ref|NP_001054679.1| Os05g0153400 [Oryza sativa Japonica Group]
 gi|52353594|gb|AAU44160.1| unknown protein [Oryza sativa Japonica Group]
 gi|54287570|gb|AAV31314.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578230|dbj|BAF16593.1| Os05g0153400 [Oryza sativa Japonica Group]
 gi|215766042|dbj|BAG98270.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218196115|gb|EEC78542.1| hypothetical protein OsI_18502 [Oryza sativa Indica Group]
 gi|222630240|gb|EEE62372.1| hypothetical protein OsJ_17161 [Oryza sativa Japonica Group]
          Length = 507

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/414 (37%), Positives = 231/414 (55%), Gaps = 7/414 (1%)

Query: 8   PAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPA 67
           P  A  +F  +  +++VSW +++   A   L   +L L+R M I    PN  +L+  L A
Sbjct: 69  PGYARRVFDEMPHRDVVSWTSLITGHAHQGLYQDSLALLRRMVISGVVPNGYSLSGALLA 128

Query: 68  CAR--GHFLRPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVFNISF-RD 122
           CA      L  GKEIHAR+++  L  + D  + N + DMY +CG ++ A+ +F +   RD
Sbjct: 129 CAGIGPGALAAGKEIHARVVKMSLHGSVDAVVENGVLDMYTRCGKIDYARKLFGVMLVRD 188

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            V++N ++ G  ++    E+L LFS M   G+  D  SF  ++ AC  LA +KQG + H 
Sbjct: 189 IVAWNSMMAGCLRSGQAEEALGLFSSMVSSGVDADGFSFAISVDACGELALLKQGMQAHA 248

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             IR    + + V NS++D Y + G +D A  +F      D+  W T+I  YG  G V  
Sbjct: 249 RVIRGGFDSDVVVRNSLVDMYAKCGCVDSAGLVFRDALSSDAVLWTTMISAYGKFGRVHD 308

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM--QADSVKPTEMHYACM 300
           AI +F+ M + G+  D V+Y+A+L+ACSH GLV++G  YF  M    +SVK    HY CM
Sbjct: 309 AICMFDRMSQLGIKRDGVAYLAVLSACSHSGLVKEGWNYFKLMFHGQNSVKMQPEHYGCM 368

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
            DLL R+G +E+A+  I N+P E     W ALL +CRI+GN +LG  AA  L  L P++ 
Sbjct: 369 ADLLCRSGYLEEALDFITNMPFESSIAAWSALLNSCRIHGNAKLGQLAASRLVQLDPENH 428

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             ++ LSN++A    W E   +RE M     KK PGCSWV+  D V  F++ D+
Sbjct: 429 SNWVALSNVHASESDWHETWMIRESMSIECVKKEPGCSWVELHDGVHVFLMADQ 482



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 136/268 (50%), Gaps = 6/268 (2%)

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSD 138
           ++A +++ GL+    L  +L  +  +CG    A+ VF+ +  RD VS+  LI G++    
Sbjct: 40  LYAVLLKLGLSASAILATSLAHLALRCGLPGYARRVFDEMPHRDVVSWTSLITGHAHQGL 99

Query: 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACANL--AAIKQGKEIHGVTIRKHLHTHL--F 194
             +SL+L   M + G+  +  S  GA+ ACA +   A+  GKEIH   ++  LH  +   
Sbjct: 100 YQDSLALLRRMVISGVVPNGYSLSGALLACAGIGPGALAAGKEIHARVVKMSLHGSVDAV 159

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           V N +LD YTR G+ID A K+F  + V+D  +WN+++ G    G+ + A+ LF +M   G
Sbjct: 160 VENGVLDMYTRCGKIDYARKLFGVMLVRDIVAWNSMMAGCLRSGQAEEALGLFSSMVSSG 219

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
           V  D  S+   + AC    L+++G +    +         +    +VD+  + G + D+ 
Sbjct: 220 VDADGFSFAISVDACGELALLKQGMQAHARVIRGGFDSDVVVRNSLVDMYAKCGCV-DSA 278

Query: 315 KLIKNLPVEPDANIWGALLGACRIYGNV 342
            L+    +  DA +W  ++ A   +G V
Sbjct: 279 GLVFRDALSSDAVLWTTMISAYGKFGRV 306



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 117/238 (49%), Gaps = 10/238 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +  +   A  LF  +  ++IV+WN+M+A   ++    +AL L   M       +  +
Sbjct: 167 MYTRCGKIDYARKLFGVMLVRDIVAWNSMMAGCLRSGQAEEALGLFSSMVSSGVDADGFS 226

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
               + AC     L+ G + HAR+IR G + D+ + N+L DMYAKCGC++ A  VF  + 
Sbjct: 227 FAISVDACGELALLKQGMQAHARVIRGGFDSDVVVRNSLVDMYAKCGCVDSAGLVFRDAL 286

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V +  +I  Y +     +++ +F  M  LG+K D V+++  +SAC++   +K+G  
Sbjct: 287 SSDAVLWTTMISAYGKFGRVHDAICMFDRMSQLGIKRDGVAYLAVLSACSHSGLVKEGWN 346

Query: 180 -----IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS-ASWNTLI 231
                 HG    K    H      + D   RSG ++ A      +P + S A+W+ L+
Sbjct: 347 YFKLMFHGQNSVKMQPEHY---GCMADLLCRSGYLEEALDFITNMPFESSIAAWSALL 401



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 15/173 (8%)

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           ++ V ++  L     +A S+     R G    A ++FD +P +D  SW +LI G+   G 
Sbjct: 40  LYAVLLKLGLSASAILATSLAHLALRCGLPGYARRVFDEMPHRDVVSWTSLITGHAHQGL 99

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS--HGGLVEKGKKYFDEMQADSVKPTEMHY 297
              ++ L   M   GV  +  S    L AC+    G +  GK    E+ A  VK   +H 
Sbjct: 100 YQDSLALLRRMVISGVVPNGYSLSGALLACAGIGPGALAAGK----EIHARVVK-MSLHG 154

Query: 298 AC-------MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           +        ++D+  R G ++ A KL   + V  D   W +++  C   G  E
Sbjct: 155 SVDAVVENGVLDMYTRCGKIDYARKLFGVMLVR-DIVAWNSMMAGCLRSGQAE 206


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 153/416 (36%), Positives = 234/416 (56%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +      LF  ++ +++VSW  ++    Q   E  A+Q    M   +  PN  T
Sbjct: 261 MYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYT 320

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V+  CA    +  G+++HA I+  GL   L + N++  MYAKCG L  +  +F+ ++
Sbjct: 321 FAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMT 380

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS++ +I GYSQ    SE+  L S MR+ G K    +    +SAC N+A ++ GK+
Sbjct: 381 RRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQ 440

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +   L     V +++++ Y + G I+ A++IFD     D  SW  +I GY   G 
Sbjct: 441 LHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGY 500

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
               I+LFE +   G+  D V++I +L+ACSH GLV+ G +YF+ M     + P++ HY 
Sbjct: 501 SREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYG 560

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLL RAG + DA  +I+ +P   D  +W  LL ACR++G+VE G   AE +  L+P 
Sbjct: 561 CMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPN 620

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G +I L+N+YA  GKW EA+ +R+LMKS+   K PG SW++ +D V  FV  DR
Sbjct: 621 CAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGDR 676



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 195/426 (45%), Gaps = 43/426 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+ +  E   +FH +  +N+VSW A++    +     +AL    EM       +S T
Sbjct: 160 MYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYT 219

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
               L ACA    L  G+EIHA+ ++KG +   F+ N L  MY KCG L     +F  +S
Sbjct: 220 FAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMS 279

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  +I    Q      ++  F  MR   +  +  +F   IS CANLA I+ G++
Sbjct: 280 MRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQ 339

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + +   L   L V NSI+  Y + G++  ++ IF  +  +D  SW+T+I GY   G 
Sbjct: 340 LHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGH 399

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           V  A  L   MR +G      +  ++L+AC +  ++E GK+    + +  ++ T M  + 
Sbjct: 400 VSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSA 459

Query: 300 MVDLLGRAGLMEDA-------------------------------VKLIKNLP---VEPD 325
           ++++  + G +E+A                               + L + +P   + PD
Sbjct: 460 LINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPD 519

Query: 326 ANIWGALLGACRIYGNVELG-----AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
           +  +  +L AC   G V+LG     A + ++      +H G  I   ++   AG+  +A 
Sbjct: 520 SVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMI---DLLCRAGRLSDAE 576

Query: 381 KVRELM 386
            + E M
Sbjct: 577 HMIEAM 582



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 193/416 (46%), Gaps = 37/416 (8%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVTLT 62
           K+     A  +F  +++K+ +SW  +++ +       +AL L + M + +    +   L+
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
               AC     +  G+ +H   ++ GL   +F+ +AL DMY K G +   + VF+ +  R
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + VS+  +I G  +     E+L  FSEM    +++D  +F  A+ ACA+  A+  G+EIH
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
              ++K      FVAN++   Y + G+++    +F+ + ++D  SW T+I     +G+ +
Sbjct: 241 AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEE 300

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF------------------- 282
            A+  F  MRE  V  +  ++ A+++ C++   +E G++                     
Sbjct: 301 CAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIM 360

Query: 283 ------DEMQADSVKPTEM------HYACMVDLLGRAGLMEDAVKLIKNLPVE---PDAN 327
                  ++ + SV   EM       ++ ++    + G + +A +L+  + +E   P   
Sbjct: 361 TMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEF 420

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI-LLSNMYAEAGKWDEASKV 382
              ++L AC     +E G     ++  +  +H    +  L NMY + G  +EAS++
Sbjct: 421 ALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRI 476



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 106/268 (39%), Gaps = 46/268 (17%)

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
           A + C +L  +++  +     I     T L  +N  L    ++G +  A ++FD +  KD
Sbjct: 20  ASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKD 79

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMR-EDGVGYDP---------------VSY----- 262
             SW TLI GY    +   A+ LF+ MR E G+  DP               V+Y     
Sbjct: 80  EISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLH 139

Query: 263 ---------------IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
                           A+L   +  G + +G++ F EM   +V    + +  ++  L RA
Sbjct: 140 GYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNV----VSWTAIITGLVRA 195

Query: 308 GLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364
           G  ++A+     +    VE D+  +   L AC   G +  G        M K      ++
Sbjct: 196 GYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQA-MKKGFDVSSFV 254

Query: 365 --LLSNMYAEAGKWDEASKVRELMKSRE 390
              L+ MY + GK +    + E M  R+
Sbjct: 255 ANTLATMYNKCGKLEYGLTLFEKMSMRD 282


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/414 (37%), Positives = 241/414 (58%), Gaps = 10/414 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+    ++A  LF     +++ +W AMV+ + QN +  +A     EMP  NE   +  +
Sbjct: 245 YAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMI 304

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
                    G+      +I   +       ++   N +   Y + G +  A+  F++   
Sbjct: 305 A--------GYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQ 356

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VS+  +I GY+Q+    E+L++F E++  G   +  +F  A+S CA++AA++ GK+I
Sbjct: 357 RDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQI 416

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  ++    T  FV N++L  Y + G ID AN  F+ +  KD  SWNT++ GY   G  
Sbjct: 417 HGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFG 476

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             A+ +FE+M+  GV  D ++ + +L+ACSH GL+++G +YF  M  D  V PT  HY C
Sbjct: 477 RQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTC 536

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           M+DLLGRAG +E+A  LI+N+P +P A  WGALLGA RI+GN ELG  AAE +F ++PQ+
Sbjct: 537 MIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQN 596

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G Y+LLSN+YA +G+W +A K+R  M+    +K PG SWV+ ++++  F V D
Sbjct: 597 SGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGD 650



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 147/300 (49%), Gaps = 23/300 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++ R  +A  LF  + EK++VSWN++++ +AQN    +A ++   MP      NS++ 
Sbjct: 121 YVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPE----KNSISW 176

Query: 62  TNVLPACARGHFLRPGK-EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +L A     ++  G+ E    +     ++DL   N L   + +   L  A+ +F+ + 
Sbjct: 177 NGLLAA-----YVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMP 231

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+N +I GY+Q    S++  LF E        DV ++   +S       + + K 
Sbjct: 232 VRDAISWNTMISGYAQGGGLSQARRLFDE----SPTRDVFTWTAMVSGYVQNGMLDEAKT 287

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
                  K+  ++    N+++  Y ++ ++D+A ++F+ +P ++ +SWNT+I GYG +G+
Sbjct: 288 FFDEMPEKNEVSY----NAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGD 343

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +  A   F+ M +     D VS+ AI+   +  G  E+    F E++ D        + C
Sbjct: 344 IAQARKFFDMMPQR----DCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGC 399



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 163/370 (44%), Gaps = 60/370 (16%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A ++F+ +  ++ VS+NAM++ + +N     A  L  +MP  + F  +V LT  +  C  
Sbjct: 68  ALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRL 127

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
           G   R    +  +        D+   N+L   YA+ G ++ A+ VF N+  ++ +S+N L
Sbjct: 128 GDARRLFDLMPEK--------DVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGL 179

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           +  Y       E+  LF          D++S+                            
Sbjct: 180 LAAYVHNGRIEEACLLFESKS----DWDLISW---------------------------- 207

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
                  N ++  + R  ++  A  +FD +PV+D+ SWNT+I GY   G +  A  LF  
Sbjct: 208 -------NCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLF-- 258

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
             ++    D  ++ A+++     G++++ K +FDEM     +  E+ Y  M+    +   
Sbjct: 259 --DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKK 312

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNM 369
           M+ A +L +++P   + + W  ++     YG +   A A +   M+  + C  +  +   
Sbjct: 313 MDIARELFESMPCR-NISSWNTMITG---YGQIGDIAQARKFFDMMPQRDCVSWAAIIAG 368

Query: 370 YAEAGKWDEA 379
           YA++G ++EA
Sbjct: 369 YAQSGHYEEA 378



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 119/300 (39%), Gaps = 54/300 (18%)

Query: 92  DLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMR 150
           D+   N     + + G  + A +VFN +  R  VSYN +I GY + S  + + +LF +M 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 151 LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210
                                                     LF  N +L  Y R+ R+ 
Sbjct: 108 ---------------------------------------ERDLFSWNVMLTGYVRNCRLG 128

Query: 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
            A ++FD +P KD  SWN+L+ GY   G VD A  +F+ M E     + +S+  +L A  
Sbjct: 129 DARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEK----NSISWNGLLAAYV 184

Query: 271 HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWG 330
           H G +E+    F+      +    + + C++    R   + DA  L   +PV  DA  W 
Sbjct: 185 HNGRIEEACLLFESKSDWDL----ISWNCLMGGFVRKKKLGDARWLFDKMPVR-DAISWN 239

Query: 331 ALLGACRIYGNVELGAWAAEHLFMLKPQHCGY-YILLSNMYAEAGKWDEASKVRELMKSR 389
            ++      G    G   A  LF   P    + +  + + Y + G  DEA    + M  +
Sbjct: 240 TMISGYAQGG----GLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK 295



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 8/126 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA+  F  I EK++VSWN M+A +A++    +AL +   M      P+ +T
Sbjct: 438 MYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEIT 497

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTN----ALTDMYAKCGCLNLAQNVF 116
           +  VL AC+    L  G E    + +   ++ +  T+     + D+  + G L  AQ++ 
Sbjct: 498 MVGVLSACSHTGLLDRGTEYFYSMTK---DYGVIPTSKHYTCMIDLLGRAGRLEEAQDLI 554

Query: 117 -NISFR 121
            N+ F+
Sbjct: 555 RNMPFQ 560


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/414 (37%), Positives = 241/414 (58%), Gaps = 10/414 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+    ++A  LF     +++ +W AMV+ + QN +  +A     EMP  NE   +  +
Sbjct: 245 YAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMI 304

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
                    G+      +I   +       ++   N +   Y + G +  A+  F++   
Sbjct: 305 A--------GYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQ 356

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VS+  +I GY+Q+    E+L++F E++  G   +  +F  A+S CA++AA++ GK+I
Sbjct: 357 RDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQI 416

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  ++    T  FV N++L  Y + G ID AN  F+ +  KD  SWNT++ GY   G  
Sbjct: 417 HGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFG 476

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             A+ +FE+M+  GV  D ++ + +L+ACSH GL+++G +YF  M  D  V PT  HY C
Sbjct: 477 RQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTC 536

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           M+DLLGRAG +E+A  LI+N+P +P A  WGALLGA RI+GN ELG  AAE +F ++PQ+
Sbjct: 537 MIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQN 596

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G Y+LLSN+YA +G+W +A K+R  M+    +K PG SWV+ ++++  F V D
Sbjct: 597 SGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGD 650



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 147/300 (49%), Gaps = 23/300 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++ R  +A  LF  + EK++VSWN++++ +AQN    +A ++   MP      NS++ 
Sbjct: 121 YVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPE----KNSISW 176

Query: 62  TNVLPACARGHFLRPGK-EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +L A     ++  G+ E    +     ++DL   N L   + +   L  A+ +F+ + 
Sbjct: 177 NGLLAA-----YVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMP 231

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+N +I GY+Q    S++  LF E        DV ++   +S       + + K 
Sbjct: 232 VRDAISWNTMISGYAQGGGLSQARRLFDE----SPTRDVFTWTAMVSGYVQNGMLDEAKT 287

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
                  K+  ++    N+++  Y ++ ++D+A ++F+ +P ++ +SWNT+I GYG +G+
Sbjct: 288 FFDEMPEKNEVSY----NAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGD 343

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +  A   F+ M +     D VS+ AI+   +  G  E+    F E++ D        + C
Sbjct: 344 IAQARKFFDMMPQR----DCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGC 399



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 163/370 (44%), Gaps = 60/370 (16%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A ++F+ +  ++ VS+NAM++ + +N     A  L  +MP  + F  +V LT  +  C  
Sbjct: 68  ALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRL 127

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
           G   R    +  +        D+   N+L   YA+ G ++ A+ VF N+  ++ +S+N L
Sbjct: 128 GDARRLFDLMPEK--------DVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGL 179

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           +  Y       E+  LF          D++S+                            
Sbjct: 180 LAAYVHNGRIEEACLLFESKS----DWDLISW---------------------------- 207

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
                  N ++  + R  ++  A  +FD +PV+D+ SWNT+I GY   G +  A  LF  
Sbjct: 208 -------NCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLF-- 258

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
             ++    D  ++ A+++     G++++ K +FDEM     +  E+ Y  M+    +   
Sbjct: 259 --DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKK 312

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNM 369
           M+ A +L +++P   + + W  ++     YG +   A A +   M+  + C  +  +   
Sbjct: 313 MDIARELFESMPCR-NISSWNTMITG---YGQIGDIAQARKFFDMMPQRDCVSWAAIIAG 368

Query: 370 YAEAGKWDEA 379
           YA++G ++EA
Sbjct: 369 YAQSGHYEEA 378



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 70/142 (49%), Gaps = 39/142 (27%)

Query: 271 HGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIW 329
           + GL++ G +YF  M  + SV PT  HY CM+DLLGR   +E+                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 330 GALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
           GALLGA RI+GN ELG  AA+  F + PQ+ G                  SK+R++    
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSG-----------------ISKMRDV---- 857

Query: 390 EAKKNPGCSWVQTRDEVQDFVV 411
             +K PG SW + ++++  F V
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSV 879



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 119/300 (39%), Gaps = 54/300 (18%)

Query: 92  DLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMR 150
           D+   N     + + G  + A +VFN +  R  VSYN +I GY + S  + + +LF +M 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 151 LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210
                                                     LF  N +L  Y R+ R+ 
Sbjct: 108 ---------------------------------------ERDLFSWNVMLTGYVRNCRLG 128

Query: 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
            A ++FD +P KD  SWN+L+ GY   G VD A  +F+ M E     + +S+  +L A  
Sbjct: 129 DARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEK----NSISWNGLLAAYV 184

Query: 271 HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWG 330
           H G +E+    F+      +    + + C++    R   + DA  L   +PV  DA  W 
Sbjct: 185 HNGRIEEACLLFESKSDWDL----ISWNCLMGGFVRKKKLGDARWLFDKMPVR-DAISWN 239

Query: 331 ALLGACRIYGNVELGAWAAEHLFMLKPQHCGY-YILLSNMYAEAGKWDEASKVRELMKSR 389
            ++      G    G   A  LF   P    + +  + + Y + G  DEA    + M  +
Sbjct: 240 TMISGYAQGG----GLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK 295



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 8/126 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA+  F  I EK++VSWN M+A +A++    +AL +   M      P+ +T
Sbjct: 438 MYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEIT 497

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTN----ALTDMYAKCGCLNLAQNVF 116
           +  VL AC+    L  G E    + +   ++ +  T+     + D+  + G L  AQ++ 
Sbjct: 498 MVGVLSACSHTGLLDRGTEYFYSMTK---DYGVIPTSKHYTCMIDLLGRAGRLEEAQDLI 554

Query: 117 -NISFR 121
            N+ F+
Sbjct: 555 RNMPFQ 560


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 144/402 (35%), Positives = 244/402 (60%), Gaps = 2/402 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     E+  +F  + +K+ VSW +M+  F+++    +A+QL REM +    P+ +T
Sbjct: 492 MYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMT 551

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           LT  L AC+  H L  GKE+H   +R  +  ++ +  AL +MY+KCG + LA+ VF+ + 
Sbjct: 552 LTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLP 611

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D+ S + L+ GY+Q     ++L LF E+R+  +  D  +    I A A L ++  G +
Sbjct: 612 QKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQ 671

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H    +  L+  + V +S++  Y++ G ID  +K+F+ +   D  SW  +I+ Y   G+
Sbjct: 672 LHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGK 731

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ +++ MR++G   D V+++ +L+ACSH G+VE+G  + + M  +  ++P   HYA
Sbjct: 732 GAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYA 791

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGR+G +++A + I N+P+EPDA +WG LL AC+++G++ELG  AA+ +  L+P 
Sbjct: 792 CMVDLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIELEPC 851

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
             G Y+ LSN+ A+ G W++  K+R LM+    KK PG S V
Sbjct: 852 EAGAYVTLSNICADMGWWEDVMKIRSLMEGTGVKKEPGWSSV 893



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 200/432 (46%), Gaps = 50/432 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           ++AK     +A  +F ++  +N+V WNA+++   +NR    AL L  +M      PNS T
Sbjct: 191 LFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFT 250

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            +++L ACA    L  G+ +   +I+ G   D+F+  A+ D+YAKC  ++ A   F  + 
Sbjct: 251 FSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMP 310

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+  +I G+ Q  D   +   F EMR +G K +  +    ++AC     IK+  +
Sbjct: 311 IRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQ 370

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF-DCLPVKDSASWNTLILGYGMLG 238
           +H    +   +    V++++++ Y++ G +DL+ ++F +    K+ A W  +I  +   G
Sbjct: 371 LHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSG 430

Query: 239 EVDTAINLFEAMREDGVGYDPV---SYIAILTACSHGGLV-------------------- 275
               A+ LF+ M ++G+  D     S ++I+ + S G L+                    
Sbjct: 431 STGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCYILKIGLFTDISVGSSLF 490

Query: 276 ---------EKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE-- 323
                    E+    F++M   D+V      +A M+         E AV+L + + +E  
Sbjct: 491 TMYSKCGSLEESYTVFEQMPDKDNVS-----WASMITGFSEHDHAEQAVQLFREMLLEEI 545

Query: 324 -PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL----LSNMYAEAGKWDE 378
            PD     A L AC    ++E G     H + L+ +  G  +L    L NMY++ G    
Sbjct: 546 RPDQMTLTAALTACSALHSLEKG--KEVHGYALRAR-VGKEVLVGGALVNMYSKCGAIVL 602

Query: 379 ASKVRELMKSRE 390
           A +V +++  ++
Sbjct: 603 ARRVFDMLPQKD 614



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 156/335 (46%), Gaps = 1/335 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y KS+    A  LF      N++SWN +++   QN     + +   +M      PN  T 
Sbjct: 91  YCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNFCKMRFSGFDPNQFTY 150

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            +VL AC        G+ +++  ++ G   + ++   + D++AK      A  VF ++  
Sbjct: 151 GSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLC 210

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
            + V +N +I G  +  +   +L LF +M       +  +F   ++ACA L  ++ G+ +
Sbjct: 211 ENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGV 270

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
            G  I+      +FV  +I+D Y +   +D A K F  +P+++  SW T+I G+    + 
Sbjct: 271 QGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDS 330

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
            +A + F+ MR+ G   +  +  ++LTAC+   ++++  +    +            + +
Sbjct: 331 ISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSAL 390

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +++  + G+++ + ++ + +    +  +W  ++ A
Sbjct: 391 INMYSKIGVVDLSERVFREMESTKNLAMWAVMISA 425



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 7/166 (4%)

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L ++ F+ NS++ +Y +S  +  A ++FD  P  +  SWN LI G       + +   F 
Sbjct: 77  LQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNFC 136

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            MR  G   +  +Y ++L+AC+  G    G+  +     +         A M+DL  +  
Sbjct: 137 KMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLC 196

Query: 309 LMEDAVKLIKNLPVEPDANIWGALL-GACRIYGNVELGAWAAEHLF 353
             EDA+++ +++  E +   W A++ GA +   N     W A  LF
Sbjct: 197 SFEDALRVFQDVLCE-NVVCWNAIISGAVKNREN-----WVALDLF 236


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 153/448 (34%), Positives = 250/448 (55%), Gaps = 39/448 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVRE-----MPIHNEF 55
           MY + +   +A  +F  +  +++VSWN++++ +  N    +AL++  +     M + N+F
Sbjct: 159 MYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQF 218

Query: 56  -PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
            P+ +T+T++L AC     L  GK +H  +I  G   D   +N L +MYAKCG L  +Q 
Sbjct: 219 KPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQE 278

Query: 115 VF--------------------------------NISFRDEVSYNILIVGYSQTSDCSES 142
           VF                                N+  RD +++N +I     + DC+  
Sbjct: 279 VFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLG 338

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
           L + S MR  G+  D+ + +  +  C+ LAA +QGKEIHG   +  L + + V N +++ 
Sbjct: 339 LRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEM 398

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y++ G +  + ++F  +  KD  +W  LI   GM GE   A+  F  M   G+  D V++
Sbjct: 399 YSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAF 458

Query: 263 IAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
           +AI+ ACSH GLVE+G  YF  M+ D  ++P   HYAC+VDLL R+ L++ A   I ++P
Sbjct: 459 VAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMP 518

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381
           ++PD++IWGALL ACR+ G+ E+    +E +  L P   GYY+L+SN+YA  GKWD+   
Sbjct: 519 LKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRS 578

Query: 382 VRELMKSREAKKNPGCSWVQTRDEVQDF 409
           +R+ +K+R  KK+PGCSW++ +++V  F
Sbjct: 579 IRKSIKARGLKKDPGCSWMEIQNKVYVF 606



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 171/383 (44%), Gaps = 50/383 (13%)

Query: 2   YAKSSRPAEASYLFHNIA-EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           YA    P  +  +F   +   N+  WN+++     N L  +AL L  E       P++ T
Sbjct: 58  YAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYT 117

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +V+ ACA        K IH R++  G   DL++ NAL DMY +   L+ A+ VF  + 
Sbjct: 118 FPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMP 177

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM------KHDVVSFMGAISACANLAA 173
            RD VS+N LI GY+     +E+L ++ +   L M      K D+++    + AC +L  
Sbjct: 178 LRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGD 237

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           ++ GK +H   I          +N +++ Y + G +  + ++F  +  KDS SWN++I  
Sbjct: 238 LEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINV 297

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP- 292
           Y   G++  ++ +FE M+      D +++  I+ +C H      G +    M+ + V P 
Sbjct: 298 YIQNGKMGDSLKVFENMK----ARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPD 353

Query: 293 --------------------TEMHYAC---------------MVDLLGRAGLMEDAVKLI 317
                                E+H  C               ++++  + G + ++ ++ 
Sbjct: 354 MATMLSILPVCSLLAAKRQGKEIH-GCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVF 412

Query: 318 KNLPVEPDANIWGALLGACRIYG 340
           K +  + D   W AL+ AC +YG
Sbjct: 413 KLMKTK-DVVTWTALISACGMYG 434



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 148/340 (43%), Gaps = 42/340 (12%)

Query: 46  VREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK 105
           ++ + + +E       +++  A A         ++H+ II  GL+  +  +  L   YA 
Sbjct: 1   MKTLRVLHECSRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAH 60

Query: 106 CGCLNLAQNVFNISFRDEVSY--NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMG 163
                 + +VF ++      Y  N +I   +     SE+LSL+SE + + ++ D  +F  
Sbjct: 61  FRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPS 120

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
            I+ACA L   +  K IH   +     + L++ N+++D Y R   +D A K+F+ +P++D
Sbjct: 121 VINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRD 180

Query: 224 SASWNTLILGYGMLGEVDTA-------INLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
             SWN+LI GY   G  + A       I LF  M  +    D ++  +IL AC H G +E
Sbjct: 181 VVSWNSLISGYNANGYWNEALEIYYQSIKLFMEM-VNQFKPDLLTITSILQACGHLGDLE 239

Query: 277 KGKKYFDEM-----QADSVKPT---EMHYAC-----------------------MVDLLG 305
            GK   D M     + D+        M+  C                       M+++  
Sbjct: 240 FGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYI 299

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
           + G M D++K+ +N+    D   W  ++ +C    +  LG
Sbjct: 300 QNGKMGDSLKVFENMKAR-DIITWNTIIASCVHSEDCNLG 338


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 147/417 (35%), Positives = 243/417 (58%), Gaps = 2/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     EA  +F  + +++ VSWNA++A   QN      +  + EM      P+  T
Sbjct: 397 LYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFT 456

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL ACA    L  G  +H + I+ GL  D F+++ + DMY KCG +  AQ + + I 
Sbjct: 457 YGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIG 516

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N +I G+S T    E+   FSEM  +G+K D  ++   +  CANLA I+ GK+
Sbjct: 517 GQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQ 576

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  I++ +    +++++++D Y + G +  +  +F+     D  SWN +I GY + G+
Sbjct: 577 IHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGYALHGQ 636

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ +FE M+   V  +  +++A+L ACSH GL++ G +YF  M +   + P   H+A
Sbjct: 637 GLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSRYKLVPQLEHFA 696

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGR+   ++A++ I+++P+E DA +W  LL  C+I  +VE+   AA ++  L P 
Sbjct: 697 CMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDVEVAETAASNVLRLDPD 756

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
               YILLSN+YA +GKW + S+ R LM+    +K PGCSW++ + E+  F+V D++
Sbjct: 757 DASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEPGCSWIEVQSEMHGFLVGDKV 813



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 163/341 (47%), Gaps = 14/341 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y  +     A+ LF  + + ++VSWN +++ + Q+ +   ++ L  EM       +  TL
Sbjct: 95  YVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTL 154

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             +L +C     L  G +IHA  ++ GL  D+   +AL DMY KC  L+ A   F+ +  
Sbjct: 155 AVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGE 214

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+   I G  Q    +  + LF +M+ LG+     ++  A  +CA +  +   +++
Sbjct: 215 RNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQL 274

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   I+    +   V  +I+D Y ++G +  A + F  LP  +  + N +++G    G  
Sbjct: 275 HAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLG 334

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPTEMHYA 298
             A+ LF+ M   GVG+D +S   + +AC+      + K YF  +Q    +VK       
Sbjct: 335 AEAMQLFQFMTRSGVGFDVISLSGVFSACA------EVKGYFQGLQVHCLAVKSGFDVDV 388

Query: 299 C----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           C    ++DL G+   + +A  + + +  + D+  W A++ A
Sbjct: 389 CVRNAILDLYGKCKALVEAYLVFQEME-QRDSVSWNAIIAA 428



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 186/442 (42%), Gaps = 55/442 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A   FH + E+N VSW A +A   QN    + ++L  +M       +   
Sbjct: 195 MYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPA 254

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +   +CA    L   +++HA  I+   + D  +  A+ D+YAK G L  A+  F  + 
Sbjct: 255 YASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLP 314

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             +  + N ++VG  +T   +E++ LF  M   G+  DV+S  G  SACA +    QG +
Sbjct: 315 HHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQ 374

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + ++      + V N+ILD Y +   +  A  +F  +  +DS SWN +I        
Sbjct: 375 VHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNEC 434

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS-----HGGLVEKGKKYFDEMQADSVKPTE 294
            +  I     M   G+  D  +Y ++L AC+       GLV  GK     +  D+   + 
Sbjct: 435 YEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSST 494

Query: 295 MHYACMVDLLGRAGLMEDAVKL----------------------------------IKNL 320
                +VD+  + G + +A KL                                  + ++
Sbjct: 495 -----VVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDM 549

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG-YYI--LLSNMYAEAGKWD 377
            V+PD   +  +L  C     +ELG     H  ++K +  G  YI   L +MYA+ G   
Sbjct: 550 GVKPDHFTYATVLDTCANLATIELGKQI--HGQIIKQEMLGDEYISSTLVDMYAKCGNMP 607

Query: 378 EASKVRELMKSREAKKNPGCSW 399
           ++     L+   +A+K    SW
Sbjct: 608 DS-----LLMFEKARKLDFVSW 624



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 121/301 (40%), Gaps = 34/301 (11%)

Query: 55  FPNSVTLTNVLPACARG--HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
           F  + T +++   CA      L  G+  HAR++  G     F++N L  MYA+CG    A
Sbjct: 14  FVATATFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHA 73

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFS------------------------ 147
             VF+ +  RD VS+N ++  Y    D   + SLF                         
Sbjct: 74  HGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFR 133

Query: 148 -------EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
                  EM   G+  D  +    + +C  L  +  G +IH + ++  L T +   ++++
Sbjct: 134 NSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALV 193

Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
           D Y +   +D A + F  +  ++S SW   I G     +    + LF  M+  G+G    
Sbjct: 194 DMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQP 253

Query: 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           +Y +   +C+    +   ++       +      +    +VD+  +AG + DA +    L
Sbjct: 254 AYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGL 313

Query: 321 P 321
           P
Sbjct: 314 P 314



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 9/144 (6%)

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N++L  Y  +G  D A  +F  +P  D  SWNTLI GY   G    ++ L   M   GV 
Sbjct: 89  NTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVA 148

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMHY-ACMVDLLGRAGLMED 312
            D  +   +L +C  GGL +       ++ A +VK    T++   + +VD+ G+   ++D
Sbjct: 149 LDRTTLAVLLKSC--GGLDDLALGV--QIHALAVKTGLETDVRAGSALVDMYGKCRSLDD 204

Query: 313 AVKLIKNLPVEPDANIWGALLGAC 336
           A++    +  E ++  WGA +  C
Sbjct: 205 ALRFFHGMG-ERNSVSWGAAIAGC 227


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 158/425 (37%), Positives = 259/425 (60%), Gaps = 9/425 (2%)

Query: 2   YAKSSRPAEASYLFHNIAE-KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y+K+    EA  +FH ++E ++ VSWN+MV  + Q+R   KAL+L  EM +     +  T
Sbjct: 183 YSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFT 242

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG-CLNLAQNVFN-I 118
           L +VL A      L  G + HA++I+ G + +  + + L D+Y+KCG C+   + VF+ I
Sbjct: 243 LASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEI 302

Query: 119 SFRDEVSYNILIVGYSQTSDCS-ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           S  D V +N +I GYS   D S E+L  F +++ +G + D  S +  ISAC+N+++  QG
Sbjct: 303 SNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQG 362

Query: 178 KEIHGVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           +++HG+ ++  + ++ + V N+++  Y++ G +  A  +FD +P  ++ S+N++I GY  
Sbjct: 363 RQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQ 422

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEM 295
            G    +++LF+ M E       +++I++L AC+H G VE GK YF+ M Q   ++P   
Sbjct: 423 HGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAG 482

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           H++CM+DLLGRAG + +A +LI+ +P +P    W ALLGACRI+GNVEL   AA  L  L
Sbjct: 483 HFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQL 542

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
            P +   Y++L+N+Y++ G+  +A+ VR+LM+ R  KK PGCSW++    +  FV  D  
Sbjct: 543 DPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAED-- 600

Query: 416 KTFTP 420
            TF P
Sbjct: 601 -TFHP 604



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 111/467 (23%), Positives = 202/467 (43%), Gaps = 92/467 (19%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K  R + A  +F +  + N+ S+N +++ +A+      A QL  EMP     P+SV+
Sbjct: 52  LYSKCRRLSAARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQ----PDSVS 107

Query: 61  LTNVLPACARGHFLRPG---------------------------------KEIHARIIRK 87
              ++ A AR    +P                                  +++HA  +  
Sbjct: 108 YNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVT 167

Query: 88  GLNFDLFLTNALTDMYAKCGCLNLAQNVFN--ISFRDEVSYNILIVGYSQTSDCSESLSL 145
           GL+  + + NAL   Y+K G L  A+ +F+     RDEVS+N ++V Y Q  + S++L L
Sbjct: 168 GLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALEL 227

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           + EM + G+  D+ +    ++A  N+  +  G + H   I+   H +  V + ++D Y++
Sbjct: 228 YLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSK 287

Query: 206 SGRIDL-ANKIFDCLPVKDSASWNTLILGYGMLGEV-DTAINLFEAMREDGVGYDP--VS 261
            G   L   K+FD +   D   WNT+I GY +  ++ D A+  F  ++  GVG+ P   S
Sbjct: 288 CGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQ--GVGHRPDDCS 345

Query: 262 YIAILTACS-----------HG-------------------------GLVEKGKKYFDEM 285
            + +++ACS           HG                         G +   K  FD M
Sbjct: 346 LVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTM 405

Query: 286 QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK---NLPVEPDANIWGALLGACRIYGNV 342
              +     + Y  M+    + G+   ++ L +    +   P    + ++L AC   G V
Sbjct: 406 PEHNT----VSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRV 461

Query: 343 ELGAW---AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
           E G       +  F ++P+  G++  + ++   AGK  EA ++ E +
Sbjct: 462 EDGKIYFNMMKQKFGIEPE-AGHFSCMIDLLGRAGKLSEAERLIETI 507



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 141/318 (44%), Gaps = 39/318 (12%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
           +    L  C     LR GK +HA  I+  +    +L+N    +Y+KC  L+ A+ VF+  
Sbjct: 10  SFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 118 -----ISFR-------------------------DEVSYNILIVGYSQTSDCSESLSLFS 147
                 SF                          D VSYN LI  Y++  D   +  LF 
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFL 129

Query: 148 EMRLLGMKHDVVSFMGAISACA-NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
           EMR   +  D  +  G I+AC  N+  I+Q   +H +++   L +++ V N+++  Y+++
Sbjct: 130 EMREAFLDMDGFTLSGIITACGINVGLIRQ---LHALSVVTGLDSYVSVGNALITSYSKN 186

Query: 207 GRIDLANKIFDCLPV-KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
           G +  A +IF  L   +D  SWN++++ Y    E   A+ L+  M   G+  D  +  ++
Sbjct: 187 GFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASV 246

Query: 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR-AGLMEDAVKLIKNLPVEP 324
           LTA ++   +  G ++  ++            + ++DL  +  G M D  K+   +   P
Sbjct: 247 LTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEIS-NP 305

Query: 325 DANIWGALLGACRIYGNV 342
           D  +W  ++    +Y ++
Sbjct: 306 DLVLWNTMISGYSLYEDL 323


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 151/432 (34%), Positives = 250/432 (57%), Gaps = 37/432 (8%)

Query: 20  EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79
           E NIVSWN +++ F ++    +A+ + +++      P+ VT+++VLP+      L  G+ 
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRL 273

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-------------IS------- 119
           IH  +I++GL  D  + +A+ DMY K G +    ++FN             I+       
Sbjct: 274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333

Query: 120 ----------FRDE------VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMG 163
                     F+++      VS+  +I G +Q     E+L LF EM++ G+K + V+   
Sbjct: 334 VDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPS 393

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
            + AC N+AA+  G+  HG  +R HL  ++ V ++++D Y + GRI+L+  +F+ +P K+
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN 453

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283
              WN+L+ G+ M G+    +++FE++    +  D +S+ ++L+AC   GL ++G KYF 
Sbjct: 454 LVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFK 513

Query: 284 EMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
            M  +  +KP   HY+CMV+LLGRAG +++A  LIK +P EPD+ +WGALL +CR+  NV
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573

Query: 343 ELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQT 402
           +L   AAE LF L+P++ G Y+LLSN+YA  G W E   +R  M+S   KKNPGCSW+Q 
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQV 633

Query: 403 RDEVQDFVVNDR 414
           ++ V   +  D+
Sbjct: 634 KNRVYTLLAGDK 645



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 150/332 (45%), Gaps = 36/332 (10%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +A  +  +I +  I S+++++    + +L  +++ +   M  H   P+S  L N+   CA
Sbjct: 68  DADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCA 127

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
                + GK+IH      GL+ D F+  ++  MY +CG +  A+ VF+ +S +D V+ + 
Sbjct: 128 ELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSA 187

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA--------------------- 167
           L+  Y++     E + + SEM   G++ ++VS+ G +S                      
Sbjct: 188 LLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLG 247

Query: 168 -CANLAAIKQ-------------GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
            C +   +               G+ IHG  I++ L     V ++++D Y +SG +    
Sbjct: 248 FCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGII 307

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
            +F+   + ++   N  I G    G VD A+ +FE  +E  +  + VS+ +I+  C+  G
Sbjct: 308 SLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNG 367

Query: 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
              +  + F EMQ   VKP  +    M+   G
Sbjct: 368 KDIEALELFREMQVAGVKPNHVTIPSMLPACG 399



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 3/234 (1%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEV--SYNILIVGYSQT 136
           + HARI++ G   D +++  L   Y+   C N A  V   S  D    S++ LI   ++ 
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQ-SIPDPTIYSFSSLIYALTKA 94

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
              ++S+ +FS M   G+  D          CA L+A K GK+IH V+    L    FV 
Sbjct: 95  KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
            S+   Y R GR+  A K+FD +  KD  + + L+  Y   G ++  + +   M   G+ 
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
            + VS+  IL+  +  G  ++    F ++      P ++  + ++  +G + ++
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEML 268


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 137/403 (33%), Positives = 243/403 (60%), Gaps = 2/403 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + E++ VSWN ++   A+++   +AL +VREM      P++ TL+ VLP  A    
Sbjct: 126 VFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECAD 185

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           ++ G  +H   I+ G + D+F+ ++L DMYA C  ++ +  VF+  S  D V +N ++ G
Sbjct: 186 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAG 245

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y+Q     E+L +F  M   G++   V+F   I A  NL+ ++ GK++H   IR   + +
Sbjct: 246 YAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDN 305

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +F+++S++D Y + G +D+A ++F+ +   D  SW  +I+GY + G    A  LFE M  
Sbjct: 306 IFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMEL 365

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLME 311
             V  + ++++A+LTACSH GLV+ G KYF+ M       P+  H A + D LGRAG ++
Sbjct: 366 GNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLD 425

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371
           +A   I  + ++P +++W  LL ACR++ N  L    A+ +F L+P+  G +++LSNMY+
Sbjct: 426 EAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYS 485

Query: 372 EAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            +G+W+EA+++R+ M+ +  KK P CSW++ ++++  F+ +D+
Sbjct: 486 ASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDK 528



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 131/234 (55%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA  ++   +  +F + ++ + V WN+M+A +AQN    +AL + R M      P  VT
Sbjct: 214 MYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVT 273

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++++PA      LR GK++HA +IR   N ++F++++L DMY KCG +++A+ VFN I 
Sbjct: 274 FSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQ 333

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
             D VS+  +I+GY+     +E+  LF  M L  +K + ++F+  ++AC++   +  G K
Sbjct: 334 SPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWK 393

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
             + ++ +      L    ++ D   R+G +D A      + +K ++S W+TL+
Sbjct: 394 YFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLL 447



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 159/368 (43%), Gaps = 26/368 (7%)

Query: 25  SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV--TLTNVLPACARGHFLRPGKEIHA 82
           SW   +   A     L A+ L  +M       +SV  +L   L +CA          +HA
Sbjct: 14  SWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHA 73

Query: 83  RIIRKGLNFDLFLTNALTDMYAKC---------------GCLNLA-----QNVFNISF-R 121
             IR G   D F  NAL ++  K                G L  A     + VF+    R
Sbjct: 74  LAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLER 133

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           D VS+N LI+G ++     E+LS+  EM   G   D  +    +   A  A IK+G  +H
Sbjct: 134 DAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVH 193

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
           G  I+      +FV +S++D Y    ++D + K+FD     D+  WN+++ GY   G V+
Sbjct: 194 GYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVE 253

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            A+ +F  M + GV   PV++ +++ A  +  L+  GK+    +            + ++
Sbjct: 254 EALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLI 313

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--LKPQH 359
           D+  + G ++ A ++   +   PD   W A++    ++G         E + +  +KP H
Sbjct: 314 DMYCKCGNVDIARRVFNGIQ-SPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNH 372

Query: 360 CGYYILLS 367
             +  +L+
Sbjct: 373 ITFLAVLT 380


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 137/403 (33%), Positives = 243/403 (60%), Gaps = 2/403 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + E++ VSWN ++   A+++   +AL +VREM      P++ TL+ VLP  A    
Sbjct: 443 VFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECAD 502

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           ++ G  +H   I+ G + D+F+ ++L DMYA C  ++ +  VF+  S  D V +N ++ G
Sbjct: 503 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAG 562

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y+Q     E+L +F  M   G++   V+F   I A  NL+ ++ GK++H   IR   + +
Sbjct: 563 YAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDN 622

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +F+++S++D Y + G +D+A ++F+ +   D  SW  +I+GY + G    A  LFE M  
Sbjct: 623 IFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMEL 682

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLME 311
             V  + ++++A+LTACSH GLV+ G KYF+ M       P+  H A + D LGRAG ++
Sbjct: 683 GNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLD 742

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371
           +A   I  + ++P +++W  LL ACR++ N  L    A+ +F L+P+  G +++LSNMY+
Sbjct: 743 EAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYS 802

Query: 372 EAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            +G+W+EA+++R+ M+ +  KK P CSW++ ++++  F+ +D+
Sbjct: 803 ASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDK 845



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 131/234 (55%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA  ++   +  +F + ++ + V WN+M+A +AQN    +AL + R M      P  VT
Sbjct: 531 MYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVT 590

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++++PA      LR GK++HA +IR   N ++F++++L DMY KCG +++A+ VFN I 
Sbjct: 591 FSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQ 650

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
             D VS+  +I+GY+     +E+  LF  M L  +K + ++F+  ++AC++   +  G K
Sbjct: 651 SPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWK 710

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
             + ++ +      L    ++ D   R+G +D A      + +K ++S W+TL+
Sbjct: 711 YFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLL 764



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 159/368 (43%), Gaps = 26/368 (7%)

Query: 25  SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV--TLTNVLPACARGHFLRPGKEIHA 82
           SW   +   A     L A+ L  +M       +SV  +L   L +CA          +HA
Sbjct: 331 SWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHA 390

Query: 83  RIIRKGLNFDLFLTNALTDMYAKC---------------GCLNLA-----QNVFNISF-R 121
             IR G   D F  NAL ++  K                G L  A     + VF+    R
Sbjct: 391 LAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLER 450

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           D VS+N LI+G ++     E+LS+  EM   G   D  +    +   A  A IK+G  +H
Sbjct: 451 DAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVH 510

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
           G  I+      +FV +S++D Y    ++D + K+FD     D+  WN+++ GY   G V+
Sbjct: 511 GYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVE 570

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            A+ +F  M + GV   PV++ +++ A  +  L+  GK+    +            + ++
Sbjct: 571 EALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLI 630

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--LKPQH 359
           D+  + G ++ A ++   +   PD   W A++    ++G         E + +  +KP H
Sbjct: 631 DMYCKCGNVDIARRVFNGI-QSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNH 689

Query: 360 CGYYILLS 367
             +  +L+
Sbjct: 690 ITFLAVLT 697


>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
          Length = 717

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 148/415 (35%), Positives = 249/415 (60%), Gaps = 5/415 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVS---WNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           +++   R   A  +F ++ + ++++   W AM   +++N     AL +  +M      P 
Sbjct: 183 LFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPG 242

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           + +++  L AC     LR G+ IHA+I+++    D  + N L  +Y + G  + A+ VF+
Sbjct: 243 NFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFD 302

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +S R+ V++N LI   S+     E  +LF +M+   +     +    + AC+ +AA+  
Sbjct: 303 GMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLT 362

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GKEIH   ++      + + NS++D Y + G ++ + ++FD +  KD ASWN ++  Y +
Sbjct: 363 GKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAI 422

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G ++  INLFE M E GV  D ++++A+L+ CS  GL E G   F+ M+ +  V P   
Sbjct: 423 NGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALE 482

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYAC+VD+LGRAG +++AVK+I+ +P +P A+IWG+LL +CR++GNV +G  AA+ LF+L
Sbjct: 483 HYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVL 542

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
           +P + G Y+++SN+YA+A  WD   K+RE+MK R  KK  GCSWVQ +D++Q FV
Sbjct: 543 EPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFV 597


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 158/440 (35%), Positives = 248/440 (56%), Gaps = 33/440 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  LF  + ++++VSWNAM+A + QN L   AL+L +E+P  +     +T
Sbjct: 207 MYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRD----VIT 262

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGL------------------NFDLFLT------ 96
              ++   A+   +    E+  ++  + L                   F LF        
Sbjct: 263 WNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNV 322

Query: 97  ---NALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLL 152
              NA+   +A+ G +  A  +F      + VS+N +I GYSQ      +L LF +M+++
Sbjct: 323 ISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMV 382

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
            MK +  +F   + ACA LA ++QG E H V IR    + + V N+++  Y + G I+ A
Sbjct: 383 DMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDA 442

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
            K+FD +  +DSAS + +I+GY + G    ++ LFE M+  G+  D V+++ +L+AC H 
Sbjct: 443 RKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHA 502

Query: 273 GLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
           GLV++G++YFD M +   + P   HY CM+DLLGRAG  ++A  LI  +P++PDA++WG+
Sbjct: 503 GLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGS 562

Query: 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
           LL ACR + N++LG   A+HL  L PQ+   Y+LLSN+YA AG+WD+   VR  MK R+ 
Sbjct: 563 LLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKV 622

Query: 392 KKNPGCSWVQTRDEVQDFVV 411
           KK  GCSW+  + +V  F+V
Sbjct: 623 KKKLGCSWIVIKKQVHAFLV 642



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 172/347 (49%), Gaps = 19/347 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     EA  +F  +  KN+VSW AM+A +A++    +AL    EM      PN  T
Sbjct: 109 IYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFT 168

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++LPAC     L    E H  I++ G   ++F+ N L DMYAK GC+  A+ +F+ + 
Sbjct: 169 FASILPACTDLEVL---GEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMP 225

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N +I GY Q     ++L LF E+     K DV+++   ++  A    ++   E
Sbjct: 226 QRDVVSWNAMIAGYVQNGLIEDALKLFQEIP----KRDVITWNTMMAGYAQCGDVENAVE 281

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +      K    +L   N+++  Y ++G +  A K+F  +P ++  SWN +I G+   G+
Sbjct: 282 L----FEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQ 337

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           V+ A+ LF+ M E  V    VS+ A++   S  G  E   K F +MQ   +KP    +A 
Sbjct: 338 VEEALKLFKTMPECNV----VSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAI 393

Query: 300 MVDLLGRAGLME---DAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           ++       ++E   +A +++     + D  +   L+G     G++E
Sbjct: 394 VLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIE 440



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 182/363 (50%), Gaps = 20/363 (5%)

Query: 35  QNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF-DL 93
           Q RL  +AL ++++M  +  +P+S T  ++L  C     L   K +HA +I+      D+
Sbjct: 42  QGRLR-EALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDI 100

Query: 94  FLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL 152
            L N L  +Y K G L  A+ VF+ +  ++ VS+  +I  Y++     E+L  F EM+ +
Sbjct: 101 SLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDV 160

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G++ +  +F   + AC +L  +    E H   ++    +++FV N ++D Y + G I+ A
Sbjct: 161 GIQPNHFTFASILPACTDLEVLG---EFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFA 217

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
            ++FD +P +D  SWN +I GY   G ++ A+ LF+ + +     D +++  ++   +  
Sbjct: 218 RELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPK----RDVITWNTMMAGYAQC 273

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
           G VE   + F++M   ++    + +  M+    + G +++A KL + +P E +   W A+
Sbjct: 274 GDVENAVELFEKMPEQNL----VSWNTMIAGYVQNGSVKEAFKLFQIMP-ERNVISWNAV 328

Query: 333 LGACRIYGNVELGAWAAEHLFMLKPQ-HCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
           +      G VE     A  LF   P+ +   +  +   Y++ G+ + A K+   M+  + 
Sbjct: 329 ISGFAQNGQVE----EALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDM 384

Query: 392 KKN 394
           K N
Sbjct: 385 KPN 387


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 159/436 (36%), Positives = 251/436 (57%), Gaps = 35/436 (8%)

Query: 14  LFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGH 72
           LF+   +K N+ SWN+++A  A++   ++AL+    M   +  PN  T    + +C+   
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
            L  G++ H + +  G   DLF+++AL DMY+KCG L  A+ +F+ IS R+ VS+  +I 
Sbjct: 91  DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 150

Query: 132 GYSQTSDC-------------------------------SESLSLFSEMRLLG-MKHDVV 159
           GY Q  D                                +ES+ +F  M   G + ++ V
Sbjct: 151 GYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAV 210

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           +    + ACA+  + + GK IH   I+  L +++FV  SI+D Y + G++++A K FD +
Sbjct: 211 TLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRM 270

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
             K+  SW+ ++ GYGM G    A+ +F  M   GV  + ++++++L ACSH GL+E+G 
Sbjct: 271 REKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGW 330

Query: 280 KYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
            +F  M  +  V+P   HY CMVDLLGRAG +++A  LIK + + PD  +WGALLGACR+
Sbjct: 331 HWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRM 390

Query: 339 YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCS 398
           + NV+LG  +A  LF L P++CGYY+LLSN+YA+AG+W++  ++R LMK+    K PG S
Sbjct: 391 HKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFS 450

Query: 399 WVQTRDEVQDFVVNDR 414
            V  +  V  F+V DR
Sbjct: 451 LVDIKGRVHVFLVGDR 466



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 109/210 (51%), Gaps = 33/210 (15%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVS-------------------------------WNAM 29
           MY+K     +A  LF  I+ +NIVS                               WN++
Sbjct: 120 MYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSI 179

Query: 30  VANFAQNRLELKALQLVREMPIHNEFP-NSVTLTNVLPACARGHFLRPGKEIHARIIRKG 88
           +A +AQN +  +++++   M    E   N+VTL+ VL ACA     R GK IH ++I+ G
Sbjct: 180 IAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMG 239

Query: 89  LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
           L  ++F+  ++ DMY KCG + +A+  F+ +  ++  S++ ++ GY       E+L +F 
Sbjct: 240 LESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFY 299

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           EM + G+K + ++F+  ++AC++   +++G
Sbjct: 300 EMNMAGVKPNYITFVSVLAACSHAGLLEEG 329


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 151/431 (35%), Positives = 245/431 (56%), Gaps = 33/431 (7%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F+    +++V+WN+M+    +  L ++A+++ +EM      PN +T+  ++ +C++   
Sbjct: 215 VFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQD 274

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVG 132
           L  GKE H  I   GL F + LTNAL DMY KCG L  A+ +F N++ +  VS+  +++G
Sbjct: 275 LNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLG 334

Query: 133 YS-------------------------------QTSDCSESLSLFSEMRLLGMKHDVVSF 161
           Y+                               Q     E+L+LF EM++  ++ D V+ 
Sbjct: 335 YARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTM 394

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           +  +SAC+ L A+  G  IH    R  L   + +  +++D Y + G I  A ++F+ +P 
Sbjct: 395 VNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQ 454

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
           ++  +W  +I G  + G    A++ F  M   G+  D ++++ +L+AC HGGLVE+G+KY
Sbjct: 455 RNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKY 514

Query: 282 FDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           F EM +  +V P   HY+CMVDLLGRAG +E+A +L+KN+P+  DA + GAL  ACR+YG
Sbjct: 515 FSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYG 574

Query: 341 NVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
           NV++G   A  L  + PQ  G Y+LL++MY+EA  W EA   R+LM  +  +K PGCS V
Sbjct: 575 NVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLV 634

Query: 401 QTRDEVQDFVV 411
           +    V +FV+
Sbjct: 635 EINGIVHEFVL 645



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 165/367 (44%), Gaps = 42/367 (11%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACARGH 72
           + + I E N+ SWNA +  + ++        L + M +     P++ T   +L  C   +
Sbjct: 113 ILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQY 172

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNILIV 131
               G  +   +++ G   D+F+ NA   M   CG L++A +VFN S  RD V++N +I 
Sbjct: 173 SSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMIT 232

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           G  +     E++ ++ EM    ++ + ++ +G IS+C+ +  +  GKE H       L  
Sbjct: 233 GCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEF 292

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            + + N+++D Y + G +  A  +FD +  K   SW T++LGY   G +D A  +   + 
Sbjct: 293 TIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIP 352

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM---------------- 295
           E  V    V + AI++ C      ++    F EMQ  +++P ++                
Sbjct: 353 EKSV----VPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALD 408

Query: 296 ------HY-------------ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
                 HY               +VD+  + G +  A+++ + +P + +   W A++   
Sbjct: 409 VGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIP-QRNCLTWTAVICGL 467

Query: 337 RIYGNVE 343
            ++GN +
Sbjct: 468 ALHGNAQ 474



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 136/263 (51%), Gaps = 7/263 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+      A  + + I EK++V WNA+++   Q +   +AL L  EM I    P+ VT+
Sbjct: 335 YARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTM 394

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            N L AC++   L  G  IH  I R  L+ D+ L  AL DMYAKCG +  A  VF  I  
Sbjct: 395 VNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQ 454

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ +++  +I G +   +  ++LS FS+M  +G+  D ++F+G +SAC +   +++G++ 
Sbjct: 455 RNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKY 514

Query: 181 HG-VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KDSASWNTLILGYGMLG 238
              ++ + ++   L   + ++D   R+G ++ A ++   +P+  D+A    L     + G
Sbjct: 515 FSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYG 574

Query: 239 EVD----TAINLFEAMREDGVGY 257
            V     TA  L E   +D   Y
Sbjct: 575 NVQIGERTAFKLLEIDPQDSGNY 597



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 116/264 (43%), Gaps = 4/264 (1%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL---AQNVFNISFRDEVSYNILIVGYS 134
           K+I A+++  GL  + F  + L    A      L    + ++ I   +  S+N  I GY 
Sbjct: 74  KQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYV 133

Query: 135 QTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           ++ D      L+  M L G +K D  ++   +  C    +   G  + G  ++      +
Sbjct: 134 ESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDI 193

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
           FV N+ +      G + +A  +F+   V+D  +WN++I G    G    AI +++ M  +
Sbjct: 194 FVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAE 253

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
            V  + ++ I ++++CS    +  GK++   ++   ++ T      ++D+  + G +  A
Sbjct: 254 KVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTA 313

Query: 314 VKLIKNLPVEPDANIWGALLGACR 337
             L  N+  +   +    +LG  R
Sbjct: 314 RVLFDNMAQKTLVSWTTMVLGYAR 337



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK    A A  +F  I ++N ++W A++   A +     AL    +M      P+ +T
Sbjct: 435 MYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEIT 494

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNV 115
              VL AC  G  +  G++  + +  K  ++  L   + + D+  + G L  A+ +
Sbjct: 495 FLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEEL 550


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 157/416 (37%), Positives = 242/416 (58%), Gaps = 3/416 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVT 60
           Y +     +A  LF  + +K++VSWN++++ F++       L L+  M       PN VT
Sbjct: 83  YVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVT 142

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +  V+ ACA    L  GK IH   ++ G+  ++ + N+L ++Y KCGCL  A  +F  +S
Sbjct: 143 VIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMS 202

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N ++  +       + +  F  MR  G+  D  + +  + AC NL   K  + 
Sbjct: 203 VQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEA 262

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  +   L  +L +A ++LD Y + G +  + K+F  +   D+ +W  ++  Y M G 
Sbjct: 263 VHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGR 322

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              AI  FE M  +GV  D V++  +L+ACSH GLVE+GK YF  M +   V+    HY+
Sbjct: 323 GREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYS 382

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGR+G + DA KLIK++P+EP++ +WGAL+GACR+ GN+ELG   AE LF L P 
Sbjct: 383 CMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPS 442

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               YI LSNMY+ AG+W +ASKVR LMK R   +NPGCS+++  +++  FV+ D+
Sbjct: 443 DSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQ 498



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 15/240 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A  LF  ++ +++VSWN+MVA      L  K +     M       +  T
Sbjct: 184 LYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQAT 243

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + ++L AC      +  + +H  I+  GL+ +L +  AL D+YAK G L+ +  VF    
Sbjct: 244 VVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMI 303

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK- 178
             D V++  ++  Y+      E++  F  M   G+  D V+F   +SAC++   +++GK 
Sbjct: 304 NPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKN 363

Query: 179 ------EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
                 E +GV +R   ++       ++D   RSG ++ A K+   +P++ +S  W  LI
Sbjct: 364 YFKIMYEFYGVELRVEHYS------CMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALI 417



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 21/211 (9%)

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
           V + + AIS C+   +I   + +H   I+   + H F+ + ++  Y   G    A ++FD
Sbjct: 41  VSALITAISTCS---SISYCRALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALELFD 97

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVE 276
            LP KD  SWN+LI G+    ++   + L   MR E G+  + V+ I +++AC+  G ++
Sbjct: 98  ELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELD 157

Query: 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
            GK          +         +++L G+ G +E A  L + + V+   + W +++   
Sbjct: 158 VGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVS-WNSMV--- 213

Query: 337 RIYGNVELGAWAAEHLFM-LKPQHCGYYILL 366
                       A H+ M L  +  GY+I++
Sbjct: 214 ------------AVHVHMGLAEKGIGYFIMM 232


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 150/424 (35%), Positives = 237/424 (55%), Gaps = 3/424 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  I  KN ++WNAM+  ++        ++L+  M      P  +T
Sbjct: 251 MYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMT 310

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           LT+++ A +R   LR GK IH  I+R  ++ D+F+  +L D Y KCG ++ A+ +F  IS
Sbjct: 311 LTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTIS 370

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             + VS+N++I G+    +  ++L ++  M+   +K D ++F   +SAC+ LAA+ +G+E
Sbjct: 371 KNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRE 430

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I   L  +  V  ++LD Y + G +D A K+F  LP +D  SW ++I  YG  G+
Sbjct: 431 LHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQ 490

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LF+ M++  V  D V+++A+L+ACSH GLV++G  YF+EM     +KP   HY+
Sbjct: 491 ASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYS 550

Query: 299 CMVDLLGRAGLMEDAVKLI-KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           C++DLLGRAG + +A +++ ++     D  +   L  AC ++ N  LG    + L  + P
Sbjct: 551 CLIDLLGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQIGKMLIEVDP 610

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKT 417
                YILLSNMYA   KWDE  KVR  MK    KK+PGCSW++    +  F   D+   
Sbjct: 611 DDPSTYILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCSWIEINQRIHPFFAEDKSNP 670

Query: 418 FTPG 421
              G
Sbjct: 671 LADG 674



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 213/437 (48%), Gaps = 47/437 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN---RLELKALQLVREMPIHNEFPN 57
           MYAK  +  +A  LF    ++++  WNA+++ + ++    + LK    ++E+      PN
Sbjct: 150 MYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFE---PN 206

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF- 116
           SVT T V+ +C R   L  GKE+H  +I + +  D F+ +AL DMY KCGCL +A+ VF 
Sbjct: 207 SVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFE 266

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            I  ++ +++N +I GYS   D    + L   M   G K  +++    I A +    ++ 
Sbjct: 267 KIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRH 326

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK IHG  +R  +   +F+  S++DFY + G +  A  IF  +   +  SWN +I G+ M
Sbjct: 327 GKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVM 386

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
           +G    A+++++ M+E  V  D +++ + L+ACS    ++KG++    +    ++  E+ 
Sbjct: 387 VGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLEANEIV 446

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLP----------------------------------V 322
              ++D+  + G +++A KL   LP                                  V
Sbjct: 447 MGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNV 506

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFM---LKPQHCGYYILLSNMYAEAGKWDEA 379
             D+  + A+L AC   G V+ G      + +   +KP    +Y  L ++   AG+  EA
Sbjct: 507 RADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPG-IEHYSCLIDLLGRAGRLHEA 565

Query: 380 SKVRELMKSREAKKNPG 396
            ++  L +S+E + + G
Sbjct: 566 YEI--LQRSKETRSDIG 580



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 194/422 (45%), Gaps = 42/422 (9%)

Query: 9   AEASYLFH-NIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLP 66
           A A  +F  N    ++  WNA+++ +  N   ++ALQL  ++  ++   P+  T   VL 
Sbjct: 55  ASAELVFQTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLK 114

Query: 67  ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVS 125
           AC     +  G+ IH  +++ GL +D+F+ ++L +MYAKC     A  +F+    RD   
Sbjct: 115 ACGGLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGC 174

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           +N +I  Y +      +L  F +M+ LG + + V+F   +S+C  L  +++GKE+H   I
Sbjct: 175 WNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELI 234

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
            + +    FV ++++D Y + G +++A ++F+ +P K++ +WN +I GY + G+  + I 
Sbjct: 235 ERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIE 294

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           L   M ++G     ++  +I+ A S    +  GK     +  + +         ++D   
Sbjct: 295 LLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYF 354

Query: 306 RAGLMEDAVKLIKNLP----------------------------------VEPDANIWGA 331
           + G +  A  + + +                                   V+PDA  + +
Sbjct: 355 KCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSS 414

Query: 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDEASKVRELMKS 388
            L AC     ++ G     H  ++  +     I+   L +MYA+ G  DEA K+   +  
Sbjct: 415 TLSACSQLAALDKG--RELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPK 472

Query: 389 RE 390
           R+
Sbjct: 473 RD 474



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 138/286 (48%), Gaps = 4/286 (1%)

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-- 116
           VTL + L  C     L+ GK IH RI   G   ++ L+ +L   Y  C     A+ VF  
Sbjct: 4   VTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQT 63

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIK 175
           N    D   +N L+  Y+      E+L LF ++     ++ D  ++   + AC  L  + 
Sbjct: 64  NDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVI 123

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G+ IH   ++  L   +FV +S+++ Y +  +   A K+FD  P +D   WN +I  Y 
Sbjct: 124 YGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYF 183

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G+ + A+  F+ M+E G   + V++  ++++C+    +E+GK+   E+    +     
Sbjct: 184 KDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAF 243

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
             + +VD+ G+ G +E A ++ + +P   +A  W A++    + G+
Sbjct: 244 VLSALVDMYGKCGCLEMAKEVFEKIP-RKNAITWNAMITGYSLKGD 288



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 7/193 (3%)

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
           D V+ + A+  C +   +KQGK IH         +++ ++ S++ FY        A  +F
Sbjct: 2   DYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVF 61

Query: 217 ---DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG-VGYDPVSYIAILTACSHG 272
              DC P+ D + WN L+  Y        A+ LF+ +  +  V  D  +Y  +L AC   
Sbjct: 62  QTNDC-PL-DVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGL 119

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
           G V  G++  + +    +       + ++++  +     DA+KL    P + D   W A+
Sbjct: 120 GRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFP-QRDVGCWNAV 178

Query: 333 LGACRIYGNVELG 345
           +      G  E+ 
Sbjct: 179 ISCYFKDGKAEMA 191


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 247/450 (54%), Gaps = 37/450 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +Y    R   A  +F N+ E++IVSWNA++A + QN L+  AL+    M   +   P+  
Sbjct: 238 LYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEF 297

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
           T+T+VL ACA    L+ GK++H+ I+R G+ +   + NAL   YAK G +  A+ + +  
Sbjct: 298 TVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKA 357

Query: 118 -------ISF-------------------------RDEVSYNILIVGYSQTSDCSESLSL 145
                  ISF                         RD +++  +IVGY Q     E++ L
Sbjct: 358 VVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMEL 417

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           F  M   G + +  +    +SACA+LA +  GK+IH   IR      + V+N+I+  Y R
Sbjct: 418 FRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYAR 477

Query: 206 SGRIDLANKIFDCLP-VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           SG + LA ++FD +   K++ +W ++I+     G  + AI LFE M   GV  D V+YI 
Sbjct: 478 SGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIG 537

Query: 265 ILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
           + +AC+H G ++KGK+Y+++M     + P   HYACMVDLL RAGL+ +A + I+ +PV 
Sbjct: 538 VFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVA 597

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVR 383
           PD  +WG+LL ACR+  N +L   AAE L  + P + G Y  L+N+Y+  G+W++A+++ 
Sbjct: 598 PDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIW 657

Query: 384 ELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +L K +  KK  G SW   + +V  F  +D
Sbjct: 658 KLRKDKAVKKETGFSWTHVQSKVHVFGADD 687



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 117/490 (23%), Positives = 199/490 (40%), Gaps = 105/490 (21%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS R A+A  +F  + E++ VSW  MV    +      A++   +M      P+   
Sbjct: 106 MYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFM 165

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---- 116
           LTNVL +CA       G+++H+ +I+ GL+  + + N++  MY KCG    A+ VF    
Sbjct: 166 LTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMK 225

Query: 117 ----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                       N+  R  VS+N +I GY+Q      +L  FS 
Sbjct: 226 VRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSR 285

Query: 149 MRLL-GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           M     M+ D  +    +SACANL  +K GK++H   +R  +     + N+++  Y +SG
Sbjct: 286 MLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSG 345

Query: 208 RIDLANKI---------------------------------FDCLPVKDSASWNTLILGY 234
            ++ A +I                                 FD +  +D  +W  +I+GY
Sbjct: 346 SVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGY 405

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK----KYFDEMQADSV 290
              G+ D A+ LF +M   G   +  +  A+L+AC+    +  GK    +    +Q  SV
Sbjct: 406 EQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSV 465

Query: 291 ----------------------------KPTEMHYACMVDLLGRAGLMEDAVKLIKNL-- 320
                                       +   + +  M+  L + GL E A+ L + +  
Sbjct: 466 SVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLR 525

Query: 321 -PVEPDANIWGALLGACRIYGNVELGAWAAEHLFM---LKPQHCGYYILLSNMYAEAGKW 376
             V+PD   +  +  AC   G ++ G    E +     + P+   +Y  + ++ A AG  
Sbjct: 526 VGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPE-MSHYACMVDLLARAGLL 584

Query: 377 DEASKVRELM 386
            EA +  + M
Sbjct: 585 TEAHEFIQRM 594



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 143/304 (47%), Gaps = 14/304 (4%)

Query: 94  FLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL 152
           F  N+L  MYAK G L  A+ VF  +  RD VS+ +++VG ++     +++  F +M   
Sbjct: 98  FTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGE 157

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G+          +S+CA   A   G+++H   I+  L + + VANS+L  Y + G  + A
Sbjct: 158 GLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETA 217

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
             +F+ + V+  +SWN ++  Y   G +D A+++FE M E  +    VS+ AI+   +  
Sbjct: 218 RAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSI----VSWNAIIAGYNQN 273

Query: 273 GLVEKGKKYFDEM-QADSVKPTEMHY-----ACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
           GL +   K+F  M  A S++P E        AC    + + G    +  L   +P    +
Sbjct: 274 GLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYS--S 331

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
            I  AL+      G+VE      +   +       +  LL   Y + G   +A +V ++M
Sbjct: 332 QIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEG-YVKLGDTKQAREVFDVM 390

Query: 387 KSRE 390
            +R+
Sbjct: 391 NNRD 394


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 155/417 (37%), Positives = 244/417 (58%), Gaps = 9/417 (2%)

Query: 3   AKSSRPAEASYLFH---NIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           A S  PA   Y  H   +I   +   +NA++   A+      AL  +  + +H   P+++
Sbjct: 46  ALSPSPAYLPYAAHIHRHIPHPSTNDFNALLRGLARGPHPTHALTFLSTI-LH---PDAL 101

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T +  L A AR   L    +IH+ ++R+G + D+ L   L D YAKCG L+ AQ VF+ I
Sbjct: 102 TFSFSLIASARALALSETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEI 161

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD  ++N LI G +Q S  SE+L+LF+ MR  G K + +S +GA++AC+ L A++ G+
Sbjct: 162 PLRDVAAWNALIAGLAQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGE 221

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KDSASWNTLILGYGML 237
            +H    +  L  ++ V N+++D Y + G  D   ++F  +   K   +WNT+I+ + M 
Sbjct: 222 GVHACVRKMDLDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMH 281

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G+   A+ LFE M +  V  D V+Y+A+L AC+H GLVE+G + FDEM    V     HY
Sbjct: 282 GDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGRGVNRNVKHY 341

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
             +VDLLGRAG + +A ++I ++P+ PD  +W +LLGAC+ YGNVE+   A+  L  +  
Sbjct: 342 GSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEMGS 401

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             CG ++LLSN+YA   +W++  +VRE MKSR+ +K PG S+++    +  FV  D+
Sbjct: 402 NSCGDFVLLSNVYAARERWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKFVNGDQ 458



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 126/245 (51%), Gaps = 3/245 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A  +F  I  +++ +WNA++A  AQ     +AL L   M    E  N +++
Sbjct: 145 YAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQGSKSSEALALFNRMRAEGEKINEISV 204

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--IS 119
              L AC++   LR G+ +HA + +  L+ ++ + NA+ DMYAKCG  +    VF+    
Sbjct: 205 LGALAACSQLGALRAGEGVHACVRKMDLDINVQVCNAVIDMYAKCGFADKGFRVFSTMTC 264

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  V++N +I+ ++   D   +L LF EM    ++ D V+++  + AC +   +++G  
Sbjct: 265 GKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVR 324

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLILGYGMLG 238
           +    + + ++ ++    S++D   R+GR+  A +I + +P V D   W +L+      G
Sbjct: 325 LFDEMVGRGVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSLLGACKTYG 384

Query: 239 EVDTA 243
            V+ A
Sbjct: 385 NVEMA 389


>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
 gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 148/415 (35%), Positives = 249/415 (60%), Gaps = 5/415 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVS---WNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           +++   R   A  +F ++ + ++++   W AM   +++N     AL +  +M      P 
Sbjct: 176 LFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPG 235

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           + +++  L AC     LR G+ IHA+I+++    D  + N L  +Y + G  + A+ VF+
Sbjct: 236 NFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFD 295

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +S R+ V++N LI   S+     E  +LF +M+   +     +    + AC+ +AA+  
Sbjct: 296 GMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLT 355

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GKEIH   ++      + + NS++D Y + G ++ + ++FD +  KD ASWN ++  Y +
Sbjct: 356 GKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAI 415

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G ++  INLFE M E GV  D ++++A+L+ CS  GL E G   F+ M+ +  V P   
Sbjct: 416 NGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALE 475

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYAC+VD+LGRAG +++AVK+I+ +P +P A+IWG+LL +CR++GNV +G  AA+ LF+L
Sbjct: 476 HYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVL 535

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
           +P + G Y+++SN+YA+A  WD   K+RE+MK R  KK  GCSWVQ +D++Q FV
Sbjct: 536 EPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFV 590


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 145/416 (34%), Positives = 241/416 (57%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F     K+ V+WN+++  + Q+    + L+  + M +  + P+SVT
Sbjct: 366 MYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERK-PDSVT 424

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              +L   ++   +  G+ IH  +I+ G   +L + N+L D+YAKCG ++    VF+ +S
Sbjct: 425 FVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMS 484

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D +S+N +I       DC+    + +EMR  G+  D  + +G +  C+ LA  +QGKE
Sbjct: 485 AHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKE 544

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG   +    +++ + N++++ Y++ G ++   K+F  +  KD  +W  LI  +GM GE
Sbjct: 545 IHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGE 604

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+  F+ M   GV  D V++IA + ACSH G+V++G ++FD M+ D +++P   HYA
Sbjct: 605 GKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYA 664

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLL R+GL+  A + I ++P++PDA++WGALL ACR  GN  +    ++ +  L   
Sbjct: 665 CVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSD 724

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             GYY+L+SN+YA  GKWD+   VR  MK++  KK PG SW++ +  V  F   D+
Sbjct: 725 DTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 780



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 181/369 (49%), Gaps = 5/369 (1%)

Query: 2   YAKSSRPAEASYLFHNIA-EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           YA+   P  +  +F +I+   N+  WN+++     N L  +AL    EM      P++ T
Sbjct: 64  YAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFT 123

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +V+ +CAR   L  G  +H   +  G   DL++ NAL DMY++   L+ A+ VF  +S
Sbjct: 124 FPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMS 183

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N LI GY       ++L ++ + R+ GM  D  +    + AC +L A+K+G  
Sbjct: 184 NRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVA 243

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HGV  +  +   + + N +L  Y +  R+  A ++F  + VKDS +WNT+I GY  LG 
Sbjct: 244 VHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGR 303

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + ++ LF  M  DG   D +S  + + AC   G ++ GK     +     +   +    
Sbjct: 304 HEASVKLFMDMI-DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNI 362

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM-LKPQ 358
           ++D+  + G +  A ++      + D+  W +L+      G  + G  + + + M  KP 
Sbjct: 363 LIDMYAKCGDLLAAQEVFDTTKCK-DSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPD 421

Query: 359 HCGYYILLS 367
              + +LLS
Sbjct: 422 SVTFVLLLS 430



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 166/346 (47%), Gaps = 4/346 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++      A Y+F  ++ ++ VSWN++++ +  N     AL +  +  +    P+  T
Sbjct: 165 MYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFT 224

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +++VL AC     ++ G  +H  I + G+  D+ + N L  MY K   L  A+ VF+ ++
Sbjct: 225 MSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMA 284

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V++N +I GY+Q      S+ LF +M + G   D++S    I AC     ++ GK 
Sbjct: 285 VKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKF 343

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I           N ++D Y + G +  A ++FD    KDS +WN+LI GY   G 
Sbjct: 344 VHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGY 403

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
               +  F+ M+ +    D V+++ +L+  S    + +G+    ++     +   +    
Sbjct: 404 YKEGLESFKMMKMERKP-DSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNS 462

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
           ++D+  + G M+D +K+   +    D   W  ++ +   + +  +G
Sbjct: 463 LLDVYAKCGEMDDLLKVFSYMSAH-DIISWNTVIASSVHFDDCTVG 507



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 161/358 (44%), Gaps = 52/358 (14%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVS-YNILIVGYSQ 135
           + +H+ II  GL+  +  +  L   YA+      + +VF +IS  + V  +N +I   + 
Sbjct: 39  RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
               +++L  ++EMR   ++ D  +F   I++CA +  ++ G  +H   +     + L++
Sbjct: 99  NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYI 158

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            N+++D Y+R   +D A  +F+ +  +DS SWN+LI GY   G  + A++++   R  G+
Sbjct: 159 GNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGM 218

Query: 256 GYDPVSYIAILTACSH----------GGLVEK-------------------------GKK 280
             D  +  ++L AC             G++EK                          ++
Sbjct: 219 VPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARR 278

Query: 281 YFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDANIWGALLGACR 337
            F +M   DSV    M   C    LGR    E +VKL  ++     PD     + + AC 
Sbjct: 279 VFSKMAVKDSVTWNTM--ICGYAQLGRH---EASVKLFMDMIDGFVPDMLSITSTIRACG 333

Query: 338 IYGNVELGAWAAEHL----FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
             G++++G +  ++L    F      C    +L +MYA+ G    A +V +  K +++
Sbjct: 334 QSGDLQVGKFVHKYLIGSGFECDTVACN---ILIDMYAKCGDLLAAQEVFDTTKCKDS 388


>gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa]
 gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 157/410 (38%), Positives = 251/410 (61%), Gaps = 3/410 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +A  +FH+I EKN+VSW  ++A +       +ALQ+ REM +     N  +++  + ACA
Sbjct: 166 DACVVFHDIKEKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISIAVRACA 225

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
                  G++IH  +I+ G   DL +TN++ DMY +CGCL+ A   FN ++ +D +++N 
Sbjct: 226 SIGSQNFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMTEKDLITWNT 285

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           LI GY + SD  E   +FS+M   G   +  +F   ++ACAN AA++ G+++HG   R+ 
Sbjct: 286 LIAGYER-SDSIEPFFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRG 344

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L  +L +AN+++D Y + G I  + K F  +   +  SW ++++GYG  G    A+ LF+
Sbjct: 345 LDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFD 404

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            M   G+  D V ++A+L ACSH GLV++G +Y + M  D  +KP +  Y C+VDLLGR 
Sbjct: 405 EMVRSGIRPDQVVFMAVLHACSHAGLVDQGLRYINCMINDYHIKPNQEIYGCVVDLLGRP 464

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           G +EDA +LI+++P   D ++WGALLGAC+ +    LG  AA+    L+P     Y++LS
Sbjct: 465 GRVEDAYQLIRSMPFMADESVWGALLGACKAHNFSRLGKLAAKKALALRPNMVETYVMLS 524

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKT 417
           N+YA  GKW EA+++R+LMK    +K  G SW++ R++V  FVV ++M +
Sbjct: 525 NIYAAEGKWGEAARMRKLMKRAGCRKVAGRSWIEVRNQVYSFVVGNKMGS 574



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 131/234 (55%), Gaps = 4/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +    +EA+  F+++ EK++++WN ++A + ++   ++   +  +M      PN  T
Sbjct: 258 MYCRCGCLSEANKYFNDMTEKDLITWNTLIAGYERSD-SIEPFFIFSQMESEGFSPNCFT 316

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T+++ ACA    L+ G+++H  I R+GL+ +L L NAL DMYAKCG +  +Q  F+ +S
Sbjct: 317 FTSLVAACANAAALQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMS 376

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
             + VS+  +++GY       E++ LF EM   G++ D V FM  + AC++   + QG +
Sbjct: 377 CTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAGLVDQGLR 436

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLI 231
            I+ +    H+  +  +   ++D   R GR++ A ++   +P + D + W  L+
Sbjct: 437 YINCMINDYHIKPNQEIYGCVVDLLGRPGRVEDAYQLIRSMPFMADESVWGALL 490



 Score = 39.7 bits (91), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           +A  +L  Y   G    A  +FD +P +D  +W T+I GY    E   A ++F  M ++ 
Sbjct: 46  LATDLLKSYFERGLTSQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKN- 104

Query: 255 VGYDP---VSYIAILTAC 269
            G DP    +  ++L AC
Sbjct: 105 -GNDPPNAFTISSVLKAC 121


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 245/415 (59%), Gaps = 1/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK      A+ +F  + ++ IVSW ++++ +AQN   ++AL++  EM   N  P+ + 
Sbjct: 217 LYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIA 276

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +VL A      L  GK IH  +I+ GL  +  L  +LT +YAKCG + +A+  FN + 
Sbjct: 277 LVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVE 336

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
               + +N +I GY +     E++ LF  M+   ++ D ++   +I+ACA + +++  + 
Sbjct: 337 NPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARW 396

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +            + V  S++D Y + G +D+A  +FD +P KD   W+ +++GYG+ G+
Sbjct: 397 MDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQ 456

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              +I LF AMR+ GV  + V+++ +LTAC + GLVE+G   F  M+   ++P   HYAC
Sbjct: 457 GRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQHYAC 516

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLLGRAG ++ A   + N+P+EP  ++WGALL AC+I+ +V LG +AAE LF L P +
Sbjct: 517 VVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYN 576

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            G+Y+ LSN+YA +  WD  +KVR LM+ +   K+ G S ++   ++Q F   D+
Sbjct: 577 TGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDK 631



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 158/332 (47%), Gaps = 2/332 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF    + ++  WNA+V  ++++     A+++   M +    P+  +   VL AC+ 
Sbjct: 126 ARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSA 185

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
              L  G+ +H +I R G   D+F+ N L  +YAKCG +  A  VF  +  R  VS+  +
Sbjct: 186 LPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSI 245

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY+Q     E+L +FSEMR   ++ D ++ +  + A  ++  ++ GK IHG  I+  L
Sbjct: 246 ISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGL 305

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
                +  S+   Y + G + +A   F+ +       WN +I GY   G  + AI LF  
Sbjct: 306 ECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRL 365

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M+   +  D ++  + + AC+  G +E  +   + +     +   +    ++D   + G 
Sbjct: 366 MKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGS 425

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           ++ A  +   +P + D  +W A++    ++G 
Sbjct: 426 VDMARFVFDRIP-DKDVVVWSAMMVGYGLHGQ 456



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 148/315 (46%), Gaps = 43/315 (13%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
           +I+A+++  GL +  FL   L +  +  G ++ A+ +F+     D   +N ++  YS+  
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
               ++ +++ M++  +  D  SF   + AC+ L A++ G+ +HG   R    + +FV N
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQN 212

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
            ++  Y + G I  AN +F  L  +   SW ++I GY   G+   A+ +F  MR+  V  
Sbjct: 213 GLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRP 272

Query: 258 DPVSYIAILTACS-----------HGGLVEKG------------------------KKYF 282
           D ++ +++L A +           HG +++ G                        + +F
Sbjct: 273 DWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFF 332

Query: 283 DEMQADSVKPTEMHYACMVDLLGRAGLMEDAV---KLIKNLPVEPDANIWGALLGACRIY 339
           ++++     P+ + +  M+    + G  E+A+   +L+K+  + PD+    + + AC   
Sbjct: 333 NQVE----NPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQI 388

Query: 340 GNVELGAWAAEHLFM 354
           G++EL  W  E++ M
Sbjct: 389 GSLELARWMDEYISM 403


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 152/414 (36%), Positives = 246/414 (59%), Gaps = 2/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YA +    +   +F  I EK I+SWN +++ F +N    +AL L  +M      P+S +
Sbjct: 347 LYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYS 406

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L + L AC    F + G +IH  II+ G NF+ F+ NAL DMYAKCG ++ A  +F  I 
Sbjct: 407 LASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIK 465

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  V++N +I G+SQ     E+++LF +M +  +K D ++F+  I AC++L  +++GK 
Sbjct: 466 EKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKW 525

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I   L    ++  ++ D Y++ G + +A+ +FD +  +   SW+ +I GYGM G+
Sbjct: 526 VHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQ 585

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           ++  I+LF  M   G+  + ++++ IL+ACSH G VE+GK YF+ M    V+P   H+AC
Sbjct: 586 INATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFAC 645

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLL RAG +  A ++I +LP   +++IWGALL  CRI+  +++     ++L  +    
Sbjct: 646 MVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTAD 705

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            GYY LLSN+YAE G WD+  KVR +MKS+  +K PG S ++   ++  F   D
Sbjct: 706 TGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGD 759



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 205/429 (47%), Gaps = 44/429 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY + S   +A   F  +  +++V+W+++V NF QN    + L +  +M      P+SVT
Sbjct: 144 MYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVT 203

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + +V  AC+    LR G+ +H  ++R+ +  +  L N+L  MY K G L  A+ +F N+ 
Sbjct: 204 MLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVP 263

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R    +  +I  Y+Q+    E+L++F++M+   M+ + V+ +G + ACA L  +K+G+ 
Sbjct: 264 CRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRS 323

Query: 180 IHGVTIRKHLHTHL-FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +HG  IR+ +   L F+  ++++ Y  +G +   +K+F+ +  K   SWNTLI  +   G
Sbjct: 324 VHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNG 383

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HG--------------- 272
           + + A+ LF  M+  G+  D  S  + L+AC            HG               
Sbjct: 384 QPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNA 443

Query: 273 --------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---P 321
                   G V    K F++++  S+    + +  M+    + G   +A+ L   +    
Sbjct: 444 LIDMYAKCGFVHSANKMFEKIKEKSL----VTWNSMICGFSQNGYSVEAITLFDQMYMNC 499

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY-ILLSNMYAEAGKWDEAS 380
           V+ D   + +++ AC   G +E G W    L M   +   Y    L++MY++ G+   A 
Sbjct: 500 VKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAH 559

Query: 381 KVRELMKSR 389
            V + M  R
Sbjct: 560 GVFDRMSER 568



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 207/455 (45%), Gaps = 43/455 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVT 60
           YA+      +  +F    + +   W  ++  +       +A+ L  EM   ++   ++  
Sbjct: 43  YAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFV 102

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL AC+    L  G ++H R+I+ G   D  +  +L  MY +  CL+ A   F+ + 
Sbjct: 103 FPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMP 162

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V+++ +++ + Q    SE L +FS+M    ++ D V+ +    AC+ L +++ G+ 
Sbjct: 163 IRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRS 222

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  +R+ + ++  + NS++  Y + G +  A ++F+ +P + +A W  +I  Y   G 
Sbjct: 223 VHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGC 282

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD---------------- 283
              A+N+F  M+E  +  + V+ + +L AC+  G V++G+                    
Sbjct: 283 FQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGP 342

Query: 284 ---EMQADSVKPTEMH-------------YACMVDLLGRAGLMEDAVKLIKNLPVE---P 324
              E+ AD+    + H             +  ++ +  R G  E+A+ L   +  +   P
Sbjct: 343 ALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMP 402

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWDEASKV 382
           D+    + L AC      +LGA    H +++K  +   ++   L +MYA+ G    A+K+
Sbjct: 403 DSYSLASSLSACGTISFSQLGAQI--HGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKM 460

Query: 383 RELMKSRE--AKKNPGCSWVQTRDEVQDFVVNDRM 415
            E +K +      +  C + Q    V+   + D+M
Sbjct: 461 FEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQM 495



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 134/319 (42%), Gaps = 21/319 (6%)

Query: 45  LVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104
           ++  MP+      S TLT                ++HA +   GL+     +  L + YA
Sbjct: 1   MILYMPLFRRCATSTTLT----------------QLHAHLFITGLHRHPPASTKLIESYA 44

Query: 105 KCGCLNLAQNVFNISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-DVVSFM 162
           + G    ++ VF+   + D   + +LI  Y       E++SL+ EM            F 
Sbjct: 45  QIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFP 104

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
             + AC+    +  G ++HG  I+    +   V  S+L  Y     +D A K FD +P++
Sbjct: 105 SVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIR 164

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282
           D  +W++++L +   G+    +++F  M  + V  D V+ +++  ACS  G +  G+   
Sbjct: 165 DVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVH 224

Query: 283 DEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
             +    ++        ++ + G+ G +  A +L +N+P    A  W  ++      G  
Sbjct: 225 GYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAP-WTPMISCYNQSGCF 283

Query: 343 E--LGAWAAEHLFMLKPQH 359
           +  L  +A    F ++P  
Sbjct: 284 QEALNVFAKMQEFKMEPNQ 302


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 152/423 (35%), Positives = 245/423 (57%), Gaps = 4/423 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH--NEFPNS 58
           MYAK     +A  +F  +  ++++ WNA+++  + +    + L L   M     +   N 
Sbjct: 350 MYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNR 409

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
            TL +VL + A    +   +++HA   + GL  D  + N L D Y KCG L+ A  VF  
Sbjct: 410 TTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKE 469

Query: 119 SFRDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           S  D++ S   ++   SQ     +++ LF +M   G++ D       ++AC +L+A +QG
Sbjct: 470 SRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQG 529

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K++H   I++   + +F  N+++  Y + G I+ A+  F  LP +   SW+ +I G    
Sbjct: 530 KQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQH 589

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G    A++LF  M ++GV  + ++  ++L+AC+H GLV+  KKYF+ M+    +  TE H
Sbjct: 590 GHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEH 649

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YACM+D+LGRAG +EDA++L+ N+P + +A +WGALLGA R++ + ELG  AAE LF L+
Sbjct: 650 YACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLE 709

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMK 416
           P+  G ++LL+N YA AG WDE +KVR+LMK    KK P  SWV+ +D+V  F+V D+  
Sbjct: 710 PEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSH 769

Query: 417 TFT 419
             T
Sbjct: 770 PMT 772



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 166/376 (44%), Gaps = 45/376 (11%)

Query: 19  AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78
            E+N VSWN M++ + +N     A+ + REM    E PN    + V+ AC     L  G+
Sbjct: 166 GERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGR 225

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTS 137
           ++H  ++R G   D+F  NAL DMY+K G + +A  VF  +   D VS+N  I G     
Sbjct: 226 QVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHG 285

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
               +L L  +M+  G+  +V +    + ACA   A   G++IHG  ++       FVA 
Sbjct: 286 HDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAV 345

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
            ++D Y + G +D A K+FD +P +D   WN LI G    G     ++LF  MR++G+  
Sbjct: 346 GLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDL 405

Query: 258 D----PVSYIAILTACSHG---------------------------------GLVEKGKK 280
           D     ++ +   TA S                                   G ++   K
Sbjct: 406 DVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIK 465

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACR 337
            F E ++D +  +      M+  L +    EDA+KL   +    +EPD+ +  +LL AC 
Sbjct: 466 VFKESRSDDIISS----TTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACT 521

Query: 338 IYGNVELGAWAAEHLF 353
                E G     HL 
Sbjct: 522 SLSAYEQGKQVHAHLI 537



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 163/341 (47%), Gaps = 9/341 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y++   P+ A  +F  I +   VSW+++V  ++ N +   AL   R M       N   
Sbjct: 46  LYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFA 105

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L  VL  CA    +R G ++HA  +   L  D+F+ NAL  +Y   G ++ A+ +F+   
Sbjct: 106 LPVVLK-CAPD--VRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYV 162

Query: 121 -----RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
                R+ VS+N +I  Y +     +++ +F EM   G + +   F   ++AC     ++
Sbjct: 163 GVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLE 222

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G+++HG  +R      +F AN+++D Y++ G I++A  +F+ +P  D  SWN  I G  
Sbjct: 223 AGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCV 282

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G    A+ L   M+  G+  +  +  ++L AC+  G    G++    M        E 
Sbjct: 283 THGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEF 342

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
               +VD+  + G ++DA K+   +P   D  +W AL+  C
Sbjct: 343 VAVGLVDMYAKHGFLDDARKVFDFMP-RRDLILWNALISGC 382



 Score = 41.6 bits (96), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 188 HLHTHLF-------VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HLH+HL         +N +L  Y+R      A  +FD +P     SW++L+  Y   G  
Sbjct: 25  HLHSHLLKSGLLAGFSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMP 84

Query: 241 DTAINLFEAMREDGV 255
             A+  F AMR  GV
Sbjct: 85  RDALLAFRAMRGRGV 99


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 155/415 (37%), Positives = 241/415 (58%), Gaps = 8/415 (1%)

Query: 3   AKSSRPAEASYLFHNIAE-KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           +K     +A  LF  + E KN+VSW AM++   QN    +A+ L  +M      PN  T 
Sbjct: 341 SKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTY 400

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
           + +L      H+     E+HA +I+        +  AL D Y K G    A  VF I   
Sbjct: 401 SAILTV----HYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEA 456

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN-LAAIKQGKE 179
           +D ++++ ++ GY+QT +  E+  LF ++   G+K +  +F   I+ACA+  AA +QGK+
Sbjct: 457 KDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQ 516

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   I+  L+  L V+++++  Y + G ID A+++F     +D  SWN++I GY   G+
Sbjct: 517 FHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQ 576

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYA 298
              A+ +F+ M++  +  D V++I ++TAC+H GLVEKG+KYF+ M  D  + PT  HY+
Sbjct: 577 AKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYS 636

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DL  RAG++E A+ +I  +P  P A +W  LLGA R++ NVELG  AAE L  L+P+
Sbjct: 637 CMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPE 696

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               Y+LLSNMYA AG W E + VR+LM  R+ KK PG SW++ +++   F+  D
Sbjct: 697 DSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGD 751



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 169/352 (48%), Gaps = 15/352 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+    +   +F  + E+N+VSW +++A ++ N L     +L  +M      PN  T
Sbjct: 137 MYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYT 196

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++ V+ A      +  G ++HA +++ G    + + N+L  +Y++ G L  A++VF+ + 
Sbjct: 197 VSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKME 256

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++N +I GY +     E   +F++M+L G+K   ++F   I +CA+L  +   K 
Sbjct: 257 IRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKL 316

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KDSASWNTLILGYGMLG 238
           +    ++    T   V  +++   ++   +D A  +F  +   K+  SW  +I G    G
Sbjct: 317 MQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNG 376

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             D A+NLF  MR +GV  +  +Y AILT   H  +      +  EM A+ +K      +
Sbjct: 377 GNDQAVNLFSQMRREGVKPNHFTYSAILTV--HYPV------FVSEMHAEVIKTNYERSS 428

Query: 299 ----CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGA 346
                ++D   + G   DAVK+ + +  + D   W A+L      G  E  A
Sbjct: 429 SVGTALLDAYVKLGNTIDAVKVFEIIEAK-DLMAWSAMLAGYAQTGETEEAA 479



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 127/234 (54%), Gaps = 4/234 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K     +A  +F  I  K++++W+AM+A +AQ     +A +L  ++      PN  T 
Sbjct: 438 YVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTF 497

Query: 62  TNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           ++V+ ACA        GK+ HA  I+  LN  L +++AL  MYAK G ++ A  VF    
Sbjct: 498 SSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQK 557

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N +I GYSQ     ++L +F EM+   M  D V+F+G I+AC +   +++G++
Sbjct: 558 ERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQK 617

Query: 180 IHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
                I   H++  +   + ++D Y+R+G ++ A  I + +P    A+ W TL+
Sbjct: 618 YFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLL 671



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 172/376 (45%), Gaps = 21/376 (5%)

Query: 8   PAEASYLFHNIAEK--NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVL 65
           P  A  LF  I  +   +   N ++ ++++++   +AL L   +   +  P+  TL+ V 
Sbjct: 41  PHIAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVF 100

Query: 66  PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEV 124
             CA     + G+++H + ++ GL   + +  +L DMY K   +N  + VF+ +  R+ V
Sbjct: 101 NICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVV 160

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           S+  L+ GYS          LF +M+  G+  +  +    I+A  N   +  G ++H + 
Sbjct: 161 SWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMV 220

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
           ++      + V NS++  Y+R G +  A  +FD + ++D  +WN++I GY   G+     
Sbjct: 221 VKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVF 280

Query: 245 NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP----TEMHYACM 300
            +F  M+  GV    +++ +++ +C+   L E        MQ  ++K      ++    +
Sbjct: 281 EIFNKMQLAGVKPTHMTFASVIKSCA--SLRELA--LVKLMQCKALKSGFTTDQIVITAL 336

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM------ 354
           +  L +   M+DA+ L   +    +   W A++  C   G    G   A +LF       
Sbjct: 337 MVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNG----GNDQAVNLFSQMRREG 392

Query: 355 LKPQHCGYYILLSNMY 370
           +KP H  Y  +L+  Y
Sbjct: 393 VKPNHFTYSAILTVHY 408



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F    E+++VSWN+M++ ++Q+    KAL++  EM   N   ++VT
Sbjct: 539 MYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVT 598

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
              V+ AC     +  G++    +I    +N  +   + + D+Y++ G L  A  + N
Sbjct: 599 FIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIIN 656


>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
 gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
          Length = 605

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 159/404 (39%), Positives = 242/404 (59%), Gaps = 8/404 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVR-EMPIHNEFPNSV 59
           MY ++S  ++A  LF  + E + V W  +++ F +N L  +AL     +   H   P++ 
Sbjct: 206 MYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNY 265

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T  +VL AC     LR G+EIHA++I  G + ++   ++L DMY KCG +  +Q +F+ +
Sbjct: 266 TFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRM 325

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           S R+ VS++ L+  Y    D  ++++LF EM+    + D+ SF   I ACA LAA+  GK
Sbjct: 326 SNRNSVSWSALLAVYCHNGDYEKAVNLFREMK----EVDLYSFGTVIRACAGLAAVTPGK 381

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           EIH   IRK     + V ++++D Y + G I+ A ++FD +P ++  +WN++I G+   G
Sbjct: 382 EIHCQYIRKGGWRDVIVESALVDLYAKCGCINFAYRVFDRMPTRNLITWNSMIHGFAQNG 441

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               AI +FEAM ++G+  D +S+I +L ACSH GLV++ + YFD M     +KP   HY
Sbjct: 442 SSGIAIQIFEAMIKEGIKPDCISFIGLLFACSHTGLVDQARHYFDLMTGKYGIKPGVEHY 501

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY-GNVELGAWAAEHLFMLK 356
            CMVDLLGRAGL+E+A  LI+N     D+++W  LLGAC     N       A+ L  L+
Sbjct: 502 NCMVDLLGRAGLLEEAENLIENAECRNDSSLWLVLLGACTTTCTNSATAERIAKKLMELE 561

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
           PQ    Y+ L+N+Y   G+WD+A KVRELMK+R+ KK PG SW+
Sbjct: 562 PQCYLSYVHLANVYRAVGRWDDAVKVRELMKNRQLKKMPGQSWM 605



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 182/387 (47%), Gaps = 11/387 (2%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  +  K++VSW +M+  + +      A++L  +M      PN  TL+ V+ AC+    
Sbjct: 118 VFDGLFVKDVVSWASMITGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSEIGN 177

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVG 132
           L  GK  H  ++R+G + +  + ++L DMY +    + A+ +F+     D V +  +I  
Sbjct: 178 LVLGKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISA 237

Query: 133 YSQTSDCSESLSLFS-EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           +++     E+L  F  + R   +  D  +F   ++AC NL  ++QG+EIH   I      
Sbjct: 238 FTRNDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVIAYGFSG 297

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
           ++   +S++D Y + G ++ + ++FD +  ++S SW+ L+  Y   G+ + A+NLF  M+
Sbjct: 298 NVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMK 357

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
           E     D  S+  ++ AC+    V  GK+   +          +  + +VDL  + G + 
Sbjct: 358 E----VDLYSFGTVIRACAGLAAVTPGKEIHCQYIRKGGWRDVIVESALVDLYAKCGCIN 413

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--LKPQHCGYYILLSNM 369
            A ++   +P   +   W +++      G+  +     E +    +KP  C  +I L   
Sbjct: 414 FAYRVFDRMPTR-NLITWNSMIHGFAQNGSSGIAIQIFEAMIKEGIKPD-CISFIGLLFA 471

Query: 370 YAEAGKWDEASKVRELMKSREAKKNPG 396
            +  G  D+A    +LM  +   K PG
Sbjct: 472 CSHTGLVDQARHYFDLMTGKYGIK-PG 497



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 151/310 (48%), Gaps = 5/310 (1%)

Query: 28  AMVANFAQNRLELKALQLVREMPIHNEFPNSVTL-TNVLPACARGHFLRPGKEIHARIIR 86
           + +  F ++ L   AL L+  + +++   N   L  ++L  C +      G++ HA +++
Sbjct: 29  SQILQFCKSGLLNDALHLLNSIDLYDSRINKPLLYASLLQTCIKVDSFTRGRQFHAHVVK 88

Query: 87  KGLNFDLFLTNALTDMYAKCGCLNL-AQNVFNISF-RDEVSYNILIVGYSQTSDCSESLS 144
            GL  D F+ N+L  +Y K G  +L  + VF+  F +D VS+  +I GY +      ++ 
Sbjct: 89  SGLETDRFVGNSLLSLYFKLGSDSLLTRRVFDGLFVKDVVSWASMITGYVREGKSGIAIE 148

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
           LF +M   G++ +  +    I AC+ +  +  GK  HGV +R+   ++  + +S++D Y 
Sbjct: 149 LFWDMLDSGIEPNGFTLSAVIKACSEIGNLVLGKCFHGVVVRRGFDSNPVILSSLIDMYG 208

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE-AMREDGVGYDPVSYI 263
           R+     A ++FD L   D   W T+I  +      + A+  F    R   +  D  ++ 
Sbjct: 209 RNSVSSDARQLFDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFG 268

Query: 264 AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
           ++LTAC + G + +G++   ++ A       +  + +VD+ G+ G +E + +L   +   
Sbjct: 269 SVLTACGNLGRLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSNR 328

Query: 324 PDANIWGALL 333
              + W ALL
Sbjct: 329 NSVS-WSALL 337


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 157/420 (37%), Positives = 243/420 (57%), Gaps = 8/420 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++      +  +F N+ E+++V+WN MV+ F QN L+ + L LV EM       +SVT
Sbjct: 366 MYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVT 425

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF--NI 118
           LT +L   +       GK+ HA +IR G+ F+  +   L DMYAK G +  AQ +F  N 
Sbjct: 426 LTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDGYLIDMYAKSGLITTAQQLFEKNS 484

Query: 119 SF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
            + RDE ++N +I GY+Q     E  ++F +M    ++ + V+    + AC  +  I  G
Sbjct: 485 XYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLG 544

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K+IHG  IR  L+ ++FV  ++LD Y++SG I  A  +F     K+S ++ T+IL YG  
Sbjct: 545 KQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQH 604

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G  + A++LF AM   G+  D V+++AIL+ACS+ GLV++G + F  M+ +  ++P+  H
Sbjct: 605 GMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEH 664

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDA-NIWGALLGACRIYGNVELGAWAAEHLFML 355
           Y C+ D+LGR G + +A + +K L  E +   IWG+LLGACRI+G  ELG   A  L  +
Sbjct: 665 YCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLLEM 724

Query: 356 KPQH--CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +      GY++LLSN+YA  G WD   +VR+ M+ +   K  GCSWV+    V  F+  D
Sbjct: 725 EKGSXLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRD 784



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 193/420 (45%), Gaps = 43/420 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSV 59
           MYA+      A  +F    E+N   WN M+  + QN   ++A+ L  ++    +F  + V
Sbjct: 264 MYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDV 323

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T  + L A ++  +L  G+++HA I++      + + NA+  MY++CG +  +  VF N+
Sbjct: 324 TFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNM 383

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD V++N ++  + Q     E L L  EM+  G   D V+    +S  +NL + + GK
Sbjct: 384 LERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGK 443

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD--CLPVKDSASWNTLILGYGM 236
           + H   IR  +     +   ++D Y +SG I  A ++F+      +D A+WN +I GY  
Sbjct: 444 QAHAYLIRHGIQFE-GMDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQ 502

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK---------------- 280
            G  +    +F  M E  V  + V+  +IL AC+  G +  GK+                
Sbjct: 503 NGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFV 562

Query: 281 ---------------YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PV 322
                          Y + + A++++   + Y  M+   G+ G+ E A+ L   +    +
Sbjct: 563 GTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGI 622

Query: 323 EPDANIWGALLGACRIYGNVELGA---WAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA 379
           +PD+  + A+L AC   G V+ G     + E  + ++P    +Y  +++M    G+  EA
Sbjct: 623 KPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSS-EHYCCVADMLGRVGRVXEA 681



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 164/327 (50%), Gaps = 6/327 (1%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + ++N+V+WN M++ + +    ++A ++ R M      P  V+  NV PA  R + 
Sbjct: 174 VFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMND 233

Query: 74  LRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVFNISF-RDEVSYNILI 130
                 ++  +++ G ++  D F+ ++   MYA+ GC++ A+ +F+    R+   +N +I
Sbjct: 234 YDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMI 293

Query: 131 VGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
            GY Q +   E++ LF + M       D V+F+ A++A + L  +  G+++H   ++   
Sbjct: 294 GGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSST 353

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
              + + N+I+  Y+R G I  + K+F  +  +D  +WNT++  +   G  D  + L   
Sbjct: 354 ILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFE 413

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M++ G   D V+  A+L+  S+    E GK+    +    ++   M    ++D+  ++GL
Sbjct: 414 MQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMD-GYLIDMYAKSGL 472

Query: 310 MEDAVKLI-KNLPVEPDANIWGALLGA 335
           +  A +L  KN   + D   W A++  
Sbjct: 473 ITTAQQLFEKNSXYDRDEATWNAMIAG 499



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 158/351 (45%), Gaps = 21/351 (5%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVTLT 62
           +   P +A +LF +I     V WN ++  F  N + + AL     M        +S T +
Sbjct: 49  RQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFS 108

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC--------------GC 108
           + L ACA+   L+ GK +H  ++R        + N+L +MY+ C               C
Sbjct: 109 STLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNC 168

Query: 109 LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
            +L + VF+ +  R+ V++N +I  Y +T    E+  +F  M  +G++   VSF+    A
Sbjct: 169 -DLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227

Query: 168 CANLAAIKQGKEIHGVTIR--KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
              +        ++G+ ++         FV +S +  Y   G +D A +IFDC   +++ 
Sbjct: 228 VWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTE 287

Query: 226 SWNTLILGYGMLGEVDTAINLF-EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            WNT+I GY        AI+LF + M  +    D V++++ LTA S    ++ G++    
Sbjct: 288 VWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAY 347

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +   S     +    ++ +  R G +  + K+  N+ +E D   W  ++ A
Sbjct: 348 ILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNM-LERDVVTWNTMVSA 397


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 158/429 (36%), Positives = 248/429 (57%), Gaps = 22/429 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM--PIHNEFPNS 58
           MY K  R  +A   F  +  KN V+WNAM+ N+  +  + +AL+L REM     +  P+ 
Sbjct: 75  MYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSARPDK 134

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKG--LNFDLFLTNALTDMYAKCGCLNLAQNVF 116
            + +  + AC+    L  G+EIH  + R+G  L+ D+ +  AL +MY+KCG L  A+ VF
Sbjct: 135 FSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVF 194

Query: 117 NISFR---DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV-------SFMGAIS 166
           + S R   D V +N +I  Y+Q     ++L L+  M      HD         +F+  I 
Sbjct: 195 D-SIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSM------HDTTDLAPKQGTFVTVID 247

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
            CA L+A+KQG+ IH      +   +L V+N+++  Y + G +D A  +F  + +KD  S
Sbjct: 248 VCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEIS 307

Query: 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
           WNT+I  Y   G  D A+ L++ M   GV    V+++ +L+ACSHGGLV  G  YF  MQ
Sbjct: 308 WNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQ 367

Query: 287 AD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
            D  +KP+  H+ C++DLLGR G + +A  ++K++P++ +A  W +LLGAC+ +G+++ G
Sbjct: 368 DDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRG 427

Query: 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDE 405
             AA+ +    P   G Y+LLSN+YA AG+W +  K+R++M +R  KK+PG SW++  D 
Sbjct: 428 VRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDV 487

Query: 406 VQDFVVNDR 414
           V +FV  DR
Sbjct: 488 VHEFVSGDR 496



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 175/350 (50%), Gaps = 14/350 (4%)

Query: 30  VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF--LRPGKEIHARIIRK 87
           +A F+ N    +AL   R M    E P+ VT + +L A A+     +  G+EIH      
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 88  GLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLF 146
           GL  ++ +  A+  MY KCG L+ A+  F  + +++ V++N ++  Y       E+L LF
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 147 SEM--RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR--KHLHTHLFVANSILDF 202
            EM  R    + D  SF  AI AC+NL  ++QG+EIH +  R  K LH  + V  ++L+ 
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 203 YTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV- 260
           Y++ G ++ A K+FD +    DS  WN +I  Y   G    A++L+ +M  D     P  
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSM-HDTTDLAPKQ 239

Query: 261 -SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319
            +++ ++  C+    +++G+     ++A +     +    +V + G+ G +++A+ +  +
Sbjct: 240 GTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHS 299

Query: 320 LPVEPDANIWGALLGACRIYGNVE--LGAWAAEHLFMLKPQHCGYYILLS 367
           + ++ + + W  ++ +   +G+ +  L  +    L  +KP    +  LLS
Sbjct: 300 MKLKDEIS-WNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLS 348


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  290 bits (743), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 154/402 (38%), Positives = 232/402 (57%), Gaps = 2/402 (0%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL 74
           F  I   +   WNA++  F Q+     A    + M   +   +++T + VL ACAR    
Sbjct: 62  FSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLAR 121

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGY 133
               +IH  I+RKG   D  L   L D+YAK G ++ A+ VF+ +  RD  S+N LI G+
Sbjct: 122 LESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGF 181

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           +Q S  +E+LSLF  M + G K + +S +GA+SACA L   K+G++IHG    +    + 
Sbjct: 182 AQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNA 241

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPV-KDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
            V N ++D Y + G +D A  +F+ +   KD  +WNT+I+ + M GE   A+ LFE M +
Sbjct: 242 QVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQ 301

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
            GV  D VSY+A+L AC+HGGLVE+G + F+ M+   VKP   HY  +VDLLGRAG + +
Sbjct: 302 SGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHE 361

Query: 313 AVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372
           A  ++ ++P  PD  +W  LLGA R + NVE+    +  L  +   HCG ++LLSN+YA 
Sbjct: 362 AYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAA 421

Query: 373 AGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             +W +  +VRE MK+R+ KK PG S+++    +  F   D+
Sbjct: 422 RERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADK 463



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 125/234 (53%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK      A  +F  + +++I SWNA+++ FAQ     +AL L + M I    PN ++
Sbjct: 149 VYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEIS 208

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +   L ACA+    + G++IH  I  +  + +  + N + DMYAKCG ++ A  VF ++S
Sbjct: 209 VLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMS 268

Query: 120 FR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            R D V++N +I+ ++   +  ++L LF +M   G+  D VS++  + AC +   +++G 
Sbjct: 269 CRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGF 328

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLI 231
            +        +  ++    S++D   R+GR+  A  I + +P V D   W TL+
Sbjct: 329 RLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLL 382


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  290 bits (743), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 146/415 (35%), Positives = 245/415 (59%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y KS    +A  +F  + + +++ W+ M+A +AQ+    +A+++   M      PN  T
Sbjct: 290 LYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFT 349

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L ++L ACA    L+ G +IH  +++ GL+ ++F++NAL DMYAKCG +  +  +F+ S 
Sbjct: 350 LASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESP 409

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
              +VS+N +IVGY Q  +  ++L LF +M    ++   V++   + ACA +AA++ G +
Sbjct: 410 NCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQ 469

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH ++++     +  V N+++D Y + G I  A  +FD L   D  SWN +I GY + G 
Sbjct: 470 IHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGL 529

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+  FE+M E     D V+++ IL+ACS+ GL+++G+ YF  M  +  ++P   HY 
Sbjct: 530 YGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYT 589

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMV LLGR+G ++ A KL+  +P EP   +W ALL AC I+ +VELG  +A+ +  ++P+
Sbjct: 590 CMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPE 649

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               ++LLSN+YA A +W   + +R  MK +  +K PG SW++ +  V  F V D
Sbjct: 650 DEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGD 704



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 159/344 (46%), Gaps = 2/344 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            Y K     +A+ LF  + ++N VS+  ++  ++Q     +A+ L   +       N   
Sbjct: 88  FYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFV 147

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            + VL       + + G  +HA + + G + D F+  AL D Y+ CG    A+ VF+ I 
Sbjct: 148 FSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIE 207

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           ++D VS+  ++  Y +     ESL LFS MR++G K +  +F   + AC  L     GK 
Sbjct: 208 YKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKA 267

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG   +      LFV   ++D Y +SG +D A ++F+ +P  D   W+ +I  Y    +
Sbjct: 268 VHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQ 327

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + AI +F  MR   V  +  +  ++L AC+    ++ G +    +    +         
Sbjct: 328 SEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNA 387

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           ++D+  + G ME++++L    P   D + W  ++      GN E
Sbjct: 388 LMDMYAKCGRMENSLQLFSESPNCTDVS-WNTVIVGYVQAGNGE 430



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 128/279 (45%), Gaps = 2/279 (0%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N+    ++L +C R      GK +H  II+KG   DLF  N L + Y K   L  A  +F
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           + +  R+ VS+  LI GYSQ    SE++ LFS ++  G + +   F   +    +    K
Sbjct: 103 DEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAK 162

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G  +H    +    +  FV  +++D Y+  G  + A ++FD +  KD  SW  ++  Y 
Sbjct: 163 LGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYV 222

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
                + ++ LF  MR  G   +  ++ ++L AC    +   GK         S      
Sbjct: 223 ENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELF 282

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
               ++DL  ++G ++DA+++ + +P + D   W  ++ 
Sbjct: 283 VGVELIDLYIKSGDVDDALQVFEEMP-KDDVIPWSFMIA 320


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  290 bits (743), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 152/419 (36%), Positives = 244/419 (58%), Gaps = 5/419 (1%)

Query: 1   MYAKSSRPAEASYLF--HNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           M +K     EA  +F  H I  +    WNAM++ + ++    KAL+L  +M  ++ + + 
Sbjct: 316 MNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDH 375

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD-LFLTNALTDMYAKCGCLNLAQNVFN 117
            T  +V  A A    L  GK++HAR I+ GL  + + ++NA+ + YAKCG L   + VFN
Sbjct: 376 YTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFN 435

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  RD +S+  L+  YSQ S+  +++ +FS MR  G+  +  +F   + +CANL  ++ 
Sbjct: 436 RMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEY 495

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+++HG+  +  L     + ++++D Y + G +  A K+F+ +   D+ SW  +I G+  
Sbjct: 496 GQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQ 555

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G VD A+ LF  M + GV  + V+++ +L ACSHGGLVE+G +YF  M+    + P   
Sbjct: 556 HGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEME 615

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYAC+VDLL R G + DA++ I  +PVEP+  +W  LLGACR++GNVELG  AA+ +   
Sbjct: 616 HYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSF 675

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           K ++   Y+LLSN Y E+G + +   +R LMK +  KK PGCSW+     +  F   D+
Sbjct: 676 KAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSWISVNGTLHKFYAGDQ 734



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 172/347 (49%), Gaps = 5/347 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     ++  +F+ + E N+VSWNAM+  F  N L L A  L   M      P++ T
Sbjct: 215 MYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQT 274

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
              V  A      +   KE+    +  G++ +  +  AL DM +KCG L  A+++FN   
Sbjct: 275 FIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHF 334

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           I+ R    +N +I GY ++    ++L LF++M    +  D  ++    +A A L  +  G
Sbjct: 335 ITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLG 394

Query: 178 KEIHGVTIRKHLHT-HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           K++H   I+  L   ++ ++N++ + Y + G ++   K+F+ +  +D  SW +L+  Y  
Sbjct: 395 KKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQ 454

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
             E D AI +F  MR +G+  +  ++ ++L +C++  L+E G++    +    +   +  
Sbjct: 455 CSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCI 514

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            + +VD+  + G + DA K+   +    D   W A++     +G V+
Sbjct: 515 ESALVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAIIAGHAQHGIVD 560



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 164/342 (47%), Gaps = 13/342 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K S    A  LF  ++++N  SW  ++A  A+N L L   +   EM     FP+    
Sbjct: 115 YSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAY 174

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           + +L  C     +  G  +HA+I+ +G     F++ AL +MYAK   +  +  VFN ++ 
Sbjct: 175 SGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE 234

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
            + VS+N +I G++      ++  LF  M   G+  D  +F+G   A   L  + + KE+
Sbjct: 235 VNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEV 294

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC--LPVKDSASWNTLILGYGMLG 238
            G  +   + ++  V  +++D  ++ G +  A  IF+   +  + +A WN +I GY   G
Sbjct: 295 SGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSG 354

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP-TEMHY 297
             + A+ LF  M ++ +  D  +Y ++  A +    +  GKK    + A ++K   E++Y
Sbjct: 355 FNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKK----VHARAIKSGLEVNY 410

Query: 298 ACMVDLLGRA----GLMEDAVKLIKNLPVEPDANIWGALLGA 335
             + + +  A    G +ED  K+   +  + D   W +L+ A
Sbjct: 411 VSISNAVANAYAKCGSLEDVRKVFNRME-DRDLISWTSLVTA 451



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 140/312 (44%), Gaps = 38/312 (12%)

Query: 37  RLELKALQLVREM----------PIHNEF-------PNSVT------------LTNVLPA 67
           R ++  LQ++R++           I   F       PNSV             L ++L  
Sbjct: 18  RFKILVLQIIRQIRNSALTITHSAIQKPFATSGIKTPNSVKVDKTDSHLQIQPLVDLLRD 77

Query: 68  CARGHFLRPGKEIHARIIRKGLN--FDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEV 124
           C    FL+  K +H  +++   +    L L N +   Y+KC  ++ A  +F+ +S R+  
Sbjct: 78  CVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTF 137

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           S+ +LI G ++     +    F EM+  G+  D  ++ G +  C  L +I+ G  +H   
Sbjct: 138 SWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQI 197

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
           + +   +H FV+ ++L+ Y +   I+ + K+F+ +   +  SWN +I G+        A 
Sbjct: 198 VIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAF 257

Query: 245 NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK---YFDEMQADSVKPTEMHYACMV 301
           +LF  M  +GV  D  ++I +  A      V K K+   Y  E+  DS     +    ++
Sbjct: 258 DLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDS---NTLVGTALI 314

Query: 302 DLLGRAGLMEDA 313
           D+  + G +++A
Sbjct: 315 DMNSKCGSLQEA 326



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 3/168 (1%)

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTH--LFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
           C +   +KQ K +HG  ++     H  L + N +   Y++   ID A ++FD +  +++ 
Sbjct: 78  CVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTF 137

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           SW  LI G    G        F  M+  G+  D  +Y  IL  C     +E G     ++
Sbjct: 138 SWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQI 197

Query: 286 QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                         ++++  +   +ED+ K+  N   E +   W A++
Sbjct: 198 VIRGFTSHTFVSTALLNMYAKLQEIEDSYKVF-NTMTEVNVVSWNAMI 244


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  290 bits (743), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 152/414 (36%), Positives = 246/414 (59%), Gaps = 2/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YA +    +   +F  I EK I+SWN +++ F +N    +AL L  +M      P+S +
Sbjct: 544 LYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYS 603

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L + L AC    F + G +IH  II+ G NF+ F+ NAL DMYAKCG ++ A  +F  I 
Sbjct: 604 LASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIK 662

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  V++N +I G+SQ     E+++LF +M +  +K D ++F+  I AC++L  +++GK 
Sbjct: 663 EKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKW 722

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I   L    ++  ++ D Y++ G + +A+ +FD +  +   SW+ +I GYGM G+
Sbjct: 723 VHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQ 782

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           ++  I+LF  M   G+  + ++++ IL+ACSH G VE+GK YF+ M    V+P   H+AC
Sbjct: 783 INATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFAC 842

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLL RAG +  A ++I +LP   +++IWGALL  CRI+  +++     ++L  +    
Sbjct: 843 MVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTAD 902

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            GYY LLSN+YAE G WD+  KVR +MKS+  +K PG S ++   ++  F   D
Sbjct: 903 TGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGD 956



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 184/392 (46%), Gaps = 56/392 (14%)

Query: 41  KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLR--------PGKEIHARIIRKGLNFD 92
           + L +  +M      P+SVT+ +V  AC+    LR         G+ +H  +IR+ ++ +
Sbjct: 474 EGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPE 533

Query: 93  L-FLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMR 150
           L FL  AL ++YA  G L     VF  I  +  +S+N LI  +++     E+L LF +M+
Sbjct: 534 LDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQ 593

Query: 151 LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210
             G+  D  S   ++SAC  ++  + G +IHG  I K  + + FV N+++D Y + G + 
Sbjct: 594 TQGLMPDSYSLASSLSACGTISFSQLGAQIHGYII-KTGNFNDFVQNALIDMYAKCGFVH 652

Query: 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
            ANK+F+ +  K   +WN++I G+   G    AI LF+ M  + V  D +++++++ ACS
Sbjct: 653 SANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACS 712

Query: 271 HGGLVEKGK-----------------------------------KYFDEMQADSVKPTEM 295
           H G +EKGK                                     FD M   S+    +
Sbjct: 713 HLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSI----V 768

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
            ++ M+   G  G +   + L   +    ++P+   +  +L AC   G VE G      +
Sbjct: 769 SWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM 828

Query: 353 --FMLKPQHCGYYILLSNMYAEAGKWDEASKV 382
             F ++P+H  ++  + ++ + AG  + A ++
Sbjct: 829 SEFGVEPKH-DHFACMVDLLSRAGDLNGAYQI 859



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 129/297 (43%), Gaps = 51/297 (17%)

Query: 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANLAA--------IKQGKEIHGVTIRKHLHT 191
           SE L +FS+M    ++ D V+ +    AC+ L +        +K+G+ +HG  IR+ +  
Sbjct: 473 SEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDP 532

Query: 192 HL-FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
            L F+  ++++ Y  +G +   +K+F+ +  K   SWNTLI  +   G+ + A+ LF  M
Sbjct: 533 ELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQM 592

Query: 251 REDGVGYDPVSYIAILTACS-----------HG-----------------------GLVE 276
           +  G+  D  S  + L+AC            HG                       G V 
Sbjct: 593 QTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVH 652

Query: 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALL 333
              K F++++  S+    + +  M+    + G   +A+ L   +    V+ D   + +++
Sbjct: 653 SANKMFEKIKEKSL----VTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVI 708

Query: 334 GACRIYGNVELGAWAAEHLFMLKPQHCGYY-ILLSNMYAEAGKWDEASKVRELMKSR 389
            AC   G +E G W    L M   +   Y    L++MY++ G+   A  V + M  R
Sbjct: 709 QACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSER 765



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 92/233 (39%), Gaps = 37/233 (15%)

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           CA    + Q   +H       LH H   +  +++ Y + G  + + ++FD  P  DS  W
Sbjct: 358 CATSTTLTQ---LHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMW 414

Query: 228 NTLILGYGMLGEVDTAINLF-EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
             LI  Y   G  + A++L+ E + +D        + ++L ACS  G +  G K      
Sbjct: 415 GVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKN----- 469

Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGA 346
                             G+A    D    + +  VEPD+    ++  AC   G++ LG 
Sbjct: 470 ------------------GQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGR 511

Query: 347 WA------AEHLFMLK----PQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
                   + H F+++    P+       L  +YA+ G   +  KV E +K +
Sbjct: 512 LGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEK 564


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  290 bits (743), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 246/415 (59%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A+ +F  + E+++V+W ++++ F QNR   +AL   R M      P+S  
Sbjct: 386 MYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDI 445

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + +++ AC     +  G  IH  +I+ GL  D+F+ ++L DMY+K G    A N+F ++ 
Sbjct: 446 MASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMP 505

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ V++N +I  Y + +    S++LFS++    +  D VSF   ++A +++AA+ +GK 
Sbjct: 506 LKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKS 565

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  +R  +   L V N+++D Y + G +  A  IF+ +  K+  +WN++I GYG  GE
Sbjct: 566 VHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGE 625

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AI LF+ MR  G+  D V+++++L++C+H GL+E+G   F+ M+    ++P   HY 
Sbjct: 626 CSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYV 685

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            +VDL GRAG + DA   +KN+PVEPD +IW +LL +C+I+ N+ELG   A  L  ++P 
Sbjct: 686 NIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLELGEMVANKLLNMEPS 745

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               Y+ L N+Y EA  WD  + +R  MK +  KK PGCSW++ R++V  F   D
Sbjct: 746 KGSNYVQLLNLYGEAELWDRTANLRASMKEKGLKKTPGCSWIEVRNKVDVFYSGD 800



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 192/397 (48%), Gaps = 15/397 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F+ + +K I  WNA+++ +  N     AL++ ++M +     +S T
Sbjct: 285 MYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFT 344

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + NVL + +       G+ IH  I+++ L   + + +AL  MY+K G  N A ++F+ + 
Sbjct: 345 ILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMK 404

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++  +I G+ Q     E+L  F  M    +K D       ISAC  L  +  G  
Sbjct: 405 ERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCT 464

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  I+  L   +FVA+S+LD Y++ G  + A  IF  +P+K+  +WN++I  Y     
Sbjct: 465 IHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNL 524

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA- 298
            D +INLF  +  + +  D VS+ ++L A S    + KGK     +    + P ++    
Sbjct: 525 PDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWI-PFDLQVEN 583

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF----- 353
            ++D+  + GL++ A  + + +  E +   W +++G    +G        A  LF     
Sbjct: 584 TLIDMYIKCGLLKYAQHIFERIS-EKNLVAWNSMIGGYGSHGECS----KAIELFDEMRS 638

Query: 354 -MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
             +KP    +  LLS+    +G  +E   + E+MK +
Sbjct: 639 SGIKPDDVTFLSLLSSC-NHSGLIEEGLHLFEMMKMK 674



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 164/339 (48%), Gaps = 4/339 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y K  RP EA YLF  + ++ NIV+WN M+  F +N L   +L+        N    S +
Sbjct: 184 YFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSS 243

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            T  L AC +G F+  GK++H   I+ G   D ++  +L  MY KC  +  A+ VFN   
Sbjct: 244 FTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVP 303

Query: 121 RDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             E+  +N LI  Y       ++L ++ +M+L  +  D  + +  +++ +       G+ 
Sbjct: 304 DKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRL 363

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +++ L + + + +++L  Y++ G  + AN IF  +  +D  +W ++I G+    +
Sbjct: 364 IHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRK 423

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A++ F AM  D V  D     +I++AC+    V+ G      +    ++      + 
Sbjct: 424 YKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASS 483

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA-CR 337
           ++D+  + G  E A  +  ++P++ +   W +++   CR
Sbjct: 484 LLDMYSKFGFPERAGNIFSDMPLK-NLVAWNSIISCYCR 521



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 144/313 (46%), Gaps = 31/313 (9%)

Query: 30  VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
           + +  Q R  ++AL+L  + P+   +    T  ++L ACA    L+ GK IH+ II  GL
Sbjct: 28  IKSLVQQRQYIEALKLYTKSPV---YTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGL 84

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVFN------ISFRDEVSYNILIVGYSQTSDCSESL 143
           + D ++T++L ++Y KCG    A  VF+      +S  D   +N +I GY +     E +
Sbjct: 85  HSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGM 144

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203
             F  M+  G                     K+GK+IH   +R  L+   F+  +++D Y
Sbjct: 145 VQFGRMQSSGY--------------------KEGKQIHSYIVRNMLNFDPFLETALIDTY 184

Query: 204 TRSGRIDLANKIFDCLPVKDS-ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
            + GR   A  +F  L  + +  +WN +I G+G  G  + ++  +   + + V     S+
Sbjct: 185 FKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSF 244

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
              L+AC  G  V  GK+   +      +     +  ++ + G+  ++E A K+   +P 
Sbjct: 245 TCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVP- 303

Query: 323 EPDANIWGALLGA 335
           + +  +W AL+ A
Sbjct: 304 DKEIELWNALISA 316



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 128/267 (47%), Gaps = 6/267 (2%)

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDE---VSYNILIV 131
           + GK+IH+ I+R  LNFD FL  AL D Y KCG    A+ +F    +D    V++N++I 
Sbjct: 156 KEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFK-KLKDRSNIVAWNVMIG 214

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           G+ +      SL  +   +   +K    SF   +SAC     +  GK++H   I+     
Sbjct: 215 GFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFED 274

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
             +V  S+L  Y +   I+ A K+F+ +P K+   WN LI  Y   G    A+ +++ M+
Sbjct: 275 DPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMK 334

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
              V  D  + + +LT+ S  GL + G+    E+    ++ +    + ++ +  + G   
Sbjct: 335 LCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSN 394

Query: 312 DAVKLIKNLPVEPDANIWGALL-GACR 337
            A  +   +  E D   WG+++ G C+
Sbjct: 395 YANSIFSTMK-ERDVVAWGSVISGFCQ 420


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  290 bits (743), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 151/432 (34%), Positives = 250/432 (57%), Gaps = 37/432 (8%)

Query: 20  EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79
           E NIVSWN +++ F ++    +A+ + +++      P+ VT+++VLP+      L  G+ 
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRL 273

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-------------IS------- 119
           IH  +I++GL  D  + +A+ DMY K G +    ++FN             I+       
Sbjct: 274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333

Query: 120 ----------FRDE------VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMG 163
                     F+++      VS+  +I G +Q     E+L LF EM++ G+K + V+   
Sbjct: 334 VDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPS 393

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
            + AC N+AA+  G+  HG  +R HL  ++ V ++++D Y + GRI+L+  +F+ +P K+
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN 453

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283
              WN+L+ G+ M G+    +++FE++    +  D +S+ ++L+AC   GL ++G KYF 
Sbjct: 454 LVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFK 513

Query: 284 EMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
            M  +  +KP   HY+CMV+LLGRAG +++A  LIK +P EPD+ +WGALL +CR+  NV
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573

Query: 343 ELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQT 402
           +L   AAE LF L+P++ G Y+LLSN+YA  G W E   +R  M+S   KKNPGCSW+Q 
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQV 633

Query: 403 RDEVQDFVVNDR 414
           ++ V   +  D+
Sbjct: 634 KNRVYTLLAGDK 645



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 150/332 (45%), Gaps = 36/332 (10%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +A  +  +I +  I S+++++    + +L  +++ +   M  H   P+S  L N+   CA
Sbjct: 68  DADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCA 127

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
                + GK+IH      GL+ D F+  ++  MY +CG +  A+ VF+ +S +D V+ + 
Sbjct: 128 ELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSA 187

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA--------------------- 167
           L+  Y++     E + + SEM   G++ ++VS+ G +S                      
Sbjct: 188 LLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLG 247

Query: 168 -CANLAAIKQ-------------GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
            C +   +               G+ IHG  I++ L     V ++++D Y +SG +    
Sbjct: 248 FCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGII 307

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
            +F+   + ++   N  I G    G VD A+ +FE  +E  +  + VS+ +I+  C+  G
Sbjct: 308 SLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNG 367

Query: 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
              +  + F EMQ   VKP  +    M+   G
Sbjct: 368 KDIEALELFREMQVAGVKPNHVTIPSMLPACG 399



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 3/234 (1%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEV--SYNILIVGYSQT 136
           + HARI++ G   D +++  L   Y+   C N A  V   S  D    S++ LI   ++ 
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQ-SIPDPTIYSFSSLIYALTKA 94

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
              ++S+ +FS M   G+  D          CA L+A K GK+IH V+    L    FV 
Sbjct: 95  KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
            S+   Y R GR+  A K+FD +  KD  + + L+  Y   G ++  + +   M   G+ 
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
            + VS+  IL+  +  G  ++    F ++      P ++  + ++  +G + ++
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEML 268


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 145/416 (34%), Positives = 241/416 (57%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F     K+ V+WN+++  + Q+    + L+  + M +  + P+SVT
Sbjct: 366 MYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERK-PDSVT 424

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              +L   ++   +  G+ IH  +I+ G   +L + N+L D+YAKCG ++    VF+ +S
Sbjct: 425 FVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMS 484

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D +S+N +I       DC+    + +EMR  G+  D  + +G +  C+ LA  +QGKE
Sbjct: 485 AHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKE 544

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG   +    +++ + N++++ Y++ G ++   K+F  +  KD  +W  LI  +GM GE
Sbjct: 545 IHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGE 604

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+  F+ M   GV  D V++IA + ACSH G+V++G ++FD M+ D +++P   HYA
Sbjct: 605 GKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYA 664

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLL R+GL+  A + I ++P++PDA++WGALL ACR  GN  +    ++ +  L   
Sbjct: 665 CVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSD 724

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             GYY+L+SN+YA  GKWD+   VR  MK++  KK PG SW++ +  V  F   D+
Sbjct: 725 DTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 780



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 181/369 (49%), Gaps = 5/369 (1%)

Query: 2   YAKSSRPAEASYLFHNIA-EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           YA+   P  +  +F +I+   N+  WN+++     N L  +AL    EM      P++ T
Sbjct: 64  YAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFT 123

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +V+ +CAR   L  G  +H   +  G   DL++ NAL DMY++   L+ A+ VF  +S
Sbjct: 124 FPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMS 183

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N LI GY       ++L ++ + R+ GM  D  +    + AC +L A+K+G  
Sbjct: 184 NRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVA 243

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HGV  +  +   + + N +L  Y +  R+  A ++F  + VKDS +WNT+I GY  LG 
Sbjct: 244 VHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGR 303

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + ++ LF  M  DG   D +S  + + AC   G ++ GK     +     +   +    
Sbjct: 304 HEASVKLFMDMI-DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNI 362

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM-LKPQ 358
           ++D+  + G +  A ++      + D+  W +L+      G  + G  + + + M  KP 
Sbjct: 363 LIDMYAKCGDLLAAQEVFDTTKCK-DSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPD 421

Query: 359 HCGYYILLS 367
              + +LLS
Sbjct: 422 SVTFVLLLS 430



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 166/346 (47%), Gaps = 4/346 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++      A Y+F  ++ ++ VSWN++++ +  N     AL +  +  +    P+  T
Sbjct: 165 MYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFT 224

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +++VL AC     ++ G  +H  I + G+  D+ + N L  MY K   L  A+ VF+ ++
Sbjct: 225 MSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMA 284

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V++N +I GY+Q      S+ LF +M + G   D++S    I AC     ++ GK 
Sbjct: 285 VKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKF 343

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I           N ++D Y + G +  A ++FD    KDS +WN+LI GY   G 
Sbjct: 344 VHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGY 403

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
               +  F+ M+ +    D V+++ +L+  S    + +G+    ++     +   +    
Sbjct: 404 YKEGLESFKMMKMERKP-DSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNS 462

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
           ++D+  + G M+D +K+   +    D   W  ++ +   + +  +G
Sbjct: 463 LLDVYAKCGEMDDLLKVFSYMSAH-DIISWNTVIASSVHFDDCTVG 507



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 161/358 (44%), Gaps = 52/358 (14%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVS-YNILIVGYSQ 135
           + +H+ II  GL+  +  +  L   YA+      + +VF +IS  + V  +N +I   + 
Sbjct: 39  RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
               +++L  ++EMR   ++ D  +F   I++CA +  ++ G  +H   +     + L++
Sbjct: 99  NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYI 158

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            N+++D Y+R   +D A  +F+ +  +DS SWN+LI GY   G  + A++++   R  G+
Sbjct: 159 GNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGM 218

Query: 256 GYDPVSYIAILTACSH----------GGLVEK-------------------------GKK 280
             D  +  ++L AC             G++EK                          ++
Sbjct: 219 VPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARR 278

Query: 281 YFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDANIWGALLGACR 337
            F +M   DSV    M   C    LGR    E +VKL  ++     PD     + + AC 
Sbjct: 279 VFSKMAVKDSVTWNTM--ICGYAQLGRH---EASVKLFMDMIDGFVPDMLSITSTIRACG 333

Query: 338 IYGNVELGAWAAEHL----FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
             G++++G +  ++L    F      C    +L +MYA+ G    A +V +  K +++
Sbjct: 334 QSGDLQVGKFVHKYLIGSGFECDTVACN---ILIDMYAKCGDLLAAQEVFDTTKCKDS 388


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 153/414 (36%), Positives = 240/414 (57%), Gaps = 1/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F  +A  N+VS+NAM+  +++    ++AL L REM +    P  +T
Sbjct: 400 MYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLT 459

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L   +    L    +IH  II+ G++ D F  +AL D+Y+KC C+  A+ VF  I 
Sbjct: 460 FVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIY 519

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V +N +  GYSQ  +  ESL L+ ++++  +K +  +F   I+A +N+A+++ G++
Sbjct: 520 DRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQ 579

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   I+  L    FV NS++D Y + G I+ ++K F     +D A WN++I  Y   G+
Sbjct: 580 FHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGD 639

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ +FE M  +GV  + V+++ +L+ACSH GL++ G  +F+ M    ++P   HYAC
Sbjct: 640 AAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESMSKFGIEPGIDHYAC 699

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MV LLGRAG + +A + +K +P++P A +W +LL ACR+ G+VELG +AAE      P  
Sbjct: 700 MVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVELGTYAAEMAISCDPAD 759

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G YILLSN++A  G W     VRE M      K PG SW++  +EV  F+  D
Sbjct: 760 SGSYILLSNIFASKGMWASVRMVREKMDMSRVVKEPGWSWIEVNNEVHRFIARD 813



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 136/251 (54%), Gaps = 1/251 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK     EA  +F  +  K  V+W A++A +A+      +L+L  +M   + +P+   +
Sbjct: 199 YAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVI 258

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           ++VL AC+   FL  GK+IH  ++R+G + D+ + N + D Y KC  +   + +FN +  
Sbjct: 259 SSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVD 318

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D VS+  +I G  Q S   +++ LF EM   G K D       +++C +L A+++G+++
Sbjct: 319 KDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQV 378

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   I+ ++    FV N ++D Y +   +  A K+FD +   +  S+N +I GY    ++
Sbjct: 379 HAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKL 438

Query: 241 DTAINLFEAMR 251
             A++LF  MR
Sbjct: 439 VEALDLFREMR 449



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 149/281 (53%), Gaps = 2/281 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLV-REMPIHNEFPNSVT 60
           Y+K +  ++A  LF  +  +N+V+W++MV+ + Q+   ++AL L  R M   +E PN   
Sbjct: 97  YSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYI 156

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+ AC +   L    ++H  +++ G   D+++  +L D YAK G ++ A+ +F+ + 
Sbjct: 157 LASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLK 216

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  V++  +I GY++      SL LF++MR   +  D       +SAC+ L  ++ GK+
Sbjct: 217 VKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQ 276

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R+     + V N I+DFY +  ++    K+F+ L  KD  SW T+I G      
Sbjct: 277 IHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSF 336

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
              A++LF  M   G   D     ++L +C     ++KG++
Sbjct: 337 HGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQ 377



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 125/262 (47%), Gaps = 4/262 (1%)

Query: 78  KEIHARIIRKGLN-FDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           K+IHA I+  G +  D+FL N L   Y+K    + AQ +F+ +  R+ V+++ ++  Y+Q
Sbjct: 71  KKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQ 130

Query: 136 TSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
                E+L LF   MR    K +       + AC  L  + Q  ++HG  ++      ++
Sbjct: 131 HGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVY 190

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           V  S++DFY + G +D A  IFD L VK + +W  +I GY  LG  + ++ LF  MRE  
Sbjct: 191 VGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGD 250

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
           V  D     ++L+ACS    +E GK+    +              ++D   +   ++   
Sbjct: 251 VYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGR 310

Query: 315 KLIKNLPVEPDANIWGALLGAC 336
           KL   L V+ D   W  ++  C
Sbjct: 311 KLFNRL-VDKDVVSWTTMIAGC 331


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 151/415 (36%), Positives = 246/415 (59%), Gaps = 3/415 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK    + A  +F +I  K + SWNA++  ++Q+     +L    +M      P+  T+
Sbjct: 438 YAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTV 497

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++L AC++   L+ GKE+H  IIR  L  D F+  +L  +Y  CG L+ A  +F+ +  
Sbjct: 498 CSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMED 557

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  VS+N ++ GY Q      +LSLF +M L G++   +S M    AC+ L +++ G+E 
Sbjct: 558 KTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREA 617

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  ++  L  + F+A S++D Y ++G +  + K+F+ L  +  ASWN +++GYG+ G  
Sbjct: 618 HGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRA 677

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYAC 299
             AI LFE M+  G   D ++++ +LTAC+H GLV +G  Y D+M+    + PT  HYAC
Sbjct: 678 KEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYAC 737

Query: 300 MVDLLGRAGLMEDAVKL-IKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           ++D+L RAG +++A+K+  + +  EP   IW  LL +CRI+ N+E+G   A  LF+ +P+
Sbjct: 738 VIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPE 797

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               Y+LLSN+YA +GKWDE  KVR+ MK    +K+ GCSW++   +V  FV  +
Sbjct: 798 KPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGE 852



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 206/437 (47%), Gaps = 55/437 (12%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE----FPN 57
           Y  +   ++A  +F  + E+N+VSWN+M+  F+ N L  +   L+ +M   ++     P+
Sbjct: 229 YGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPD 288

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             TL  VLP CAR   +  GK +H   ++  L+ ++ + NAL DMY+KCGC+N AQ +F 
Sbjct: 289 VATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFK 348

Query: 118 I-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAI 174
           + + ++ VS+N ++ G+S   D  ++  L  +M   G  ++ D V+ + A+  C   + +
Sbjct: 349 LNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVL 408

Query: 175 KQGKEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
              KE+H  ++++  +H +  VAN+ +  Y + G +  A+++F  +  K   SWN LI G
Sbjct: 409 PNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGG 468

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS----------------------- 270
           Y    +   +++ +  M+  G+  D  +  ++L+ACS                       
Sbjct: 469 YSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERD 528

Query: 271 ------------HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
                       H G +      FD M+      T + +  MV+   + G  E A+ L +
Sbjct: 529 SFVYISLLSLYIHCGELSTAHVLFDAME----DKTLVSWNTMVNGYLQNGFPERALSLFR 584

Query: 319 NL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQHCGYYILLSNMYAE 372
            +    V+P      ++ GAC +  ++ LG  A  H + LK     +      + +MYA+
Sbjct: 585 QMVLYGVQPCEISMMSVFGACSLLPSLRLGREA--HGYALKCLLEDNAFIACSVIDMYAK 642

Query: 373 AGKWDEASKVRELMKSR 389
            G   E+ KV   +K R
Sbjct: 643 NGSVMESFKVFNGLKER 659



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 163/344 (47%), Gaps = 10/344 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MY+    P ++  +F  + +KN+  WNA+++++++N L    L++  +M   +   P++ 
Sbjct: 126 MYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNF 185

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI- 118
           T   V+ ACA    ++ G  +H  +++  L  D+F++NAL   Y   G ++ A  VF I 
Sbjct: 186 TFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIM 245

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMR----LLGMKHDVVSFMGAISACANLAAI 174
             R+ VS+N +I  +S      E   L  +M      +    DV +    +  CA    I
Sbjct: 246 PERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREI 305

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             GK +HG+ ++  L   + V N+++D Y++ G I+ A  IF     K+  SWNT++ G+
Sbjct: 306 GVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGF 365

Query: 235 GMLGEVDTAINLFEAMREDG--VGYDPVSYIAILTACSHGGLVEKGKK-YFDEMQADSVK 291
              G++    +L   M   G  +  D V+ +  +  C    ++   K+ +   ++ + V 
Sbjct: 366 SAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVH 425

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
             E+     V    + G +  A ++  ++  +   N W AL+G 
Sbjct: 426 NNELVANAFVASYAKCGSLSYAHRVFCSIRSKT-VNSWNALIGG 468



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 14/223 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y      + A  LF  + +K +VSWN MV  + QN    +AL L R+M ++   P  ++
Sbjct: 538 LYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEIS 597

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +V  AC+    LR G+E H   ++  L  + F+  ++ DMYAK G +  +  VFN + 
Sbjct: 598 MMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLK 657

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R   S+N +++GY       E++ LF EM+  G   D ++F+G ++AC +   + +   
Sbjct: 658 ERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHE--- 714

Query: 180 IHGVTIRKHLHTHLFVAN-------SILDFYTRSGRIDLANKI 215
             G+T    + T LF  N        ++D   R+G++D A KI
Sbjct: 715 --GLTYLDQMKT-LFGMNPTLKHYACVIDMLVRAGKLDEALKI 754



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 134/284 (47%), Gaps = 10/284 (3%)

Query: 67  ACARGHFLRPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDE 123
           A  R   ++ G++IH  +       N D+  T  +T MY+ CG  + +++VF+ +  ++ 
Sbjct: 90  ASGRRKDIQLGRKIHQLVSESARLSNDDVLCTRVIT-MYSMCGSPDDSRSVFDALRKKNL 148

Query: 124 VSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
             +N +I  YS+       L +F +M    G+  D  +F   + ACA ++ ++ G  +HG
Sbjct: 149 FQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHG 208

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
           + ++  L   +FV+N+++ FY  +G +  A ++F  +P ++  SWN++I  +   G  + 
Sbjct: 209 LVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEE 268

Query: 243 AINLFEAM--REDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
              L   M  ++D + + P   +   +L  C+    +  GK         S+    +   
Sbjct: 269 CFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNN 328

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
            ++D+  + G + DA ++I  L    +   W  ++G     G++
Sbjct: 329 ALMDMYSKCGCINDA-QVIFKLNNNKNVVSWNTMVGGFSAAGDI 371


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  290 bits (742), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 153/420 (36%), Positives = 246/420 (58%), Gaps = 10/420 (2%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQ---LVREMPIHNEFP- 56
            +Y+K  +  EA +L H   + ++ SWNA++  + ++    KAL+   L+ EM I    P 
Sbjct: 1042 LYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGI----PI 1097

Query: 57   NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
            + +TL   + A      L+ GK+I A  I+ G N DL++++ + DMY KCG +  A  +F
Sbjct: 1098 DEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELF 1157

Query: 117  -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
              IS  DEV++  +I GY +  D   +LS++  MR+ G++ D  +F   I A + L A++
Sbjct: 1158 GEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALE 1217

Query: 176  QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            QGK+IH   ++       FV  S++D Y + G +  A ++F  + V+    WN ++LG  
Sbjct: 1218 QGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLA 1277

Query: 236  MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTE 294
              G VD A+NLF  M+ +G+  D V++I +L+ACSH GL  +  KYFD M +   + P  
Sbjct: 1278 QHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEI 1337

Query: 295  MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
             HY+C+VD LGRAG +++A  +I ++P +  A+++ ALLGACR  G+ E     A+ L  
Sbjct: 1338 EHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLA 1397

Query: 355  LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            L P     Y+LLSN+YA + +WD+ +  R +MK +  KK+PG SW+  +++V  FVV+DR
Sbjct: 1398 LDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDR 1457



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 190/351 (54%), Gaps = 13/351 (3%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MY+K+     A   F N  E +++SWN M++++AQN LE++A+   R++      P+  T
Sbjct: 938  MYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFT 997

Query: 61   LTNVLPACA---RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
            L +VL AC+    G +   G ++H   I+ G+  D F++ AL D+Y+K G ++ A+ + +
Sbjct: 998  LASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLH 1057

Query: 118  ISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
              +  D  S+N ++ GY +++   ++L  FS M  +G+  D ++   AI A   L  +KQ
Sbjct: 1058 GKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQ 1117

Query: 177  GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            GK+I    I+   +  L+V++ +LD Y + G +  A ++F  +   D  +W T+I GY  
Sbjct: 1118 GKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIE 1177

Query: 237  LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK--PTE 294
             G+ D A++++  MR  GV  D  ++  ++ A S    +E+GK    ++ A+ VK   + 
Sbjct: 1178 NGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGK----QIHANVVKLDYSL 1233

Query: 295  MHY--ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             H+    +VD+  + G ++DA ++ + + V      W A+L     +G+V+
Sbjct: 1234 DHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAMLLGLAQHGHVD 1283



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 6/191 (3%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF-RDEVSYNILIVG 132
           L+ GK  HARI+  G   D +LTN L  MY+KCG L  A+ VF+ S  RD V++N ++  
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 133 YSQTSDCS-----ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
           Y+Q +D S     E   LF  +R  G     ++    +  C     ++  + +HG  ++ 
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                LFV+ ++++ Y + G +  A  +FD +P +D+  WN ++  Y      D A+  F
Sbjct: 747 GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 248 EAMREDGVGYD 258
            A    G   D
Sbjct: 807 SAFHRSGFXPD 817



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 152/341 (44%), Gaps = 32/341 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQ--NRLELKALQLVREMPIHNEFPNS 58
           MY+K      A  +F   +++++V+WN+++A +AQ  +      L+  R   +  EF  S
Sbjct: 655 MYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFS 714

Query: 59  VT---LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           +T   L  +L  C    F++  + +H   ++ G   DLF++ AL ++Y K G +  A+ +
Sbjct: 715 ITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLL 774

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ +  RD V +N+++  Y + S   E+L  FS     G   D  +    I      + +
Sbjct: 775 FDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVN--SDV 832

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
              ++ H   ++ +       A  +  F       D  + IF         +WN  +  +
Sbjct: 833 SNNRKRHAEQVKAY-------AMKMFPF-------DQGSNIF---------AWNKKLTEF 869

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G++  AI+ F+ +    +G+D V+ + IL+A      ++ G++    +   S  P  
Sbjct: 870 LHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVV 929

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                ++++  +AG++  A K   N P E D   W  ++ +
Sbjct: 930 PVSNSLMNMYSKAGVVYAAEKTFINSP-ELDLISWNTMISS 969



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 141/341 (41%), Gaps = 38/341 (11%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            +Y K     +A  LF  + E++ V WN M+  + +N  + +AL+           P+   
Sbjct: 761  IYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSN 820

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA-KCGCLNLAQNVFNIS 119
            L  V+        +   ++ HA  ++                YA K    +   N+F   
Sbjct: 821  LHCVIGGVNSD--VSNNRKRHAEQVKA---------------YAMKMFPFDQGSNIF--- 860

Query: 120  FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
                 ++N  +  +        ++  F  +    + HD V+ +  +SA      +  G++
Sbjct: 861  -----AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQ 915

Query: 180  IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            IH + I+      + V+NS+++ Y+++G +  A K F   P  D  SWNT+I  Y     
Sbjct: 916  IHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNL 975

Query: 240  VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF---DEMQADSVK----P 292
               AI  F  +  DG+  D  +  ++L ACS G   ++G +YF    ++   ++K     
Sbjct: 976  EMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYFTLGSQVHVYAIKCGIIN 1031

Query: 293  TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                   ++DL  + G M++A  L+     + D   W A++
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHG-KYDFDLASWNAIM 1071



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 6/170 (3%)

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           +A +K GK  H   +        ++ N+++  Y++ G +  A ++FD    +D  +WN++
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 231 ILGYGMLGE-----VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           +  Y    +     V     LF  +RE G     ++   +L  C   G V+  +      
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 286 QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                +        +V++  + GL+  A  L   +P E DA +W  +L A
Sbjct: 744 VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKA 792


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  290 bits (742), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 155/416 (37%), Positives = 241/416 (57%), Gaps = 33/416 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++      A  LF ++  +++ SWNAM++   QN    +AL ++ EM +     N VT
Sbjct: 159 MYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVT 218

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
           + ++LP                                  DMYAK G L+ A  VF I  
Sbjct: 219 VVSILPV-------------------------------FVDMYAKLGLLDSAHKVFEIIP 247

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGK 178
            +D +S+N LI GY+Q    SE++ ++  M     +  +  +++  + A A++ A++QG 
Sbjct: 248 VKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGM 307

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IHG  I+ +LH  +FVA  ++D Y + GR+  A  +F  +P + S +WN +I  +G+ G
Sbjct: 308 KIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHG 367

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             +  + LF  M ++GV  D V+++++L+ACSH G VE+GK  F  MQ   +KP+  HY 
Sbjct: 368 HAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYG 427

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAG +E A   IK++P++PDA+IWGALLGACRI+GN+ELG +A++ LF +  +
Sbjct: 428 CMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSK 487

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + GYY+LLSN+YA  GKW+   KVR L + R  KK PG S ++   +V  F   ++
Sbjct: 488 NVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQ 543



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 186/388 (47%), Gaps = 50/388 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +YA     + +   F  I +K++ +WN+M++ +  N    +A+    ++ + +E  P+  
Sbjct: 60  LYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFY 119

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T   VL AC     L  G++IH    + G  +++F+  +L  MY++ G   +A+++F ++
Sbjct: 120 TFPPVLKACGT---LVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDM 176

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            FRD  S+N +I G  Q  + +++L +  EMRL G+K + V+ +  +             
Sbjct: 177 PFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPV----------- 225

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
                                +D Y + G +D A+K+F+ +PVKD  SWNTLI GY   G
Sbjct: 226 --------------------FVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNG 265

Query: 239 EVDTAINLFEAMRE-DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
               AI +++ M E   +  +  ++++IL A +H G +++G K    +   ++       
Sbjct: 266 LASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVA 325

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE-----LGAWAAEHL 352
            C++D+ G+ G + DA+ L   +P E     W A++    I+G+ E      G    E  
Sbjct: 326 TCLIDVYGKCGRLVDAMSLFYQVPQESSVT-WNAIISCHGIHGHAEKTLKLFGEMLDEG- 383

Query: 353 FMLKPQHCGYYILLS----NMYAEAGKW 376
             +KP H  +  LLS    + + E GKW
Sbjct: 384 --VKPDHVTFVSLLSACSHSGFVEEGKW 409



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 137/278 (49%), Gaps = 17/278 (6%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           K +HA ++  G    +F++  L ++YA  G ++L++  F+ I  +D  ++N +I  Y   
Sbjct: 36  KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHN 95

Query: 137 SDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
               E++  F ++ L+  ++ D  +F   + AC  L     G++IH    +     ++FV
Sbjct: 96  GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRKIHCWAFKLGFQWNVFV 152

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
           A S++  Y+R G   +A  +FD +P +D  SWN +I G    G    A+++ + MR +G+
Sbjct: 153 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 212

Query: 256 GYDPVSYIAILTAC----SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
             + V+ ++IL       +  GL++   K F+ +    V    + +  ++    + GL  
Sbjct: 213 KMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDV----ISWNTLITGYAQNGLAS 268

Query: 312 DAVKLIKNL----PVEPDANIWGALLGACRIYGNVELG 345
           +A+++ K +     + P+   W ++L A    G ++ G
Sbjct: 269 EAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG 306


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  290 bits (742), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 239/414 (57%), Gaps = 10/414 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++ R  EA  LF  + ++N+VSW AM++ +AQN     A +L   MP  NE   +  L
Sbjct: 184 YCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAML 243

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
              + A   GH      E  A +        +   NA+   + + G ++ A+ VF  +  
Sbjct: 244 VGYIQA---GHV-----EDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCE 295

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD+ +++ +I  Y Q     E+LS F EM   G++ +  S +  ++ CA LA +  G+E+
Sbjct: 296 RDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREV 355

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   +R      +F  ++++  Y + G +D A ++F     KD   WN++I GY   G  
Sbjct: 356 HAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLG 415

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYAC 299
           + A+ +F  MR  G+  D ++YI  LTACS+ G V++G++ F+ M  +S ++P   HY+C
Sbjct: 416 EQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSC 475

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGR+GL+E+A  LIKN+PVEPDA IWGAL+GACR++ N E+  +AA+ L  L+P +
Sbjct: 476 MVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGN 535

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G Y+LLS++Y   G+W++ASK+R+ + SR   K+PGCSW++    V  F   D
Sbjct: 536 AGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGD 589



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 130/330 (39%), Gaps = 71/330 (21%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPI-----HNEFPNSVTLT-NVLP-- 66
           F  +  +   S+NA++A + +NRL   AL L R MP      +N   + ++L    LP  
Sbjct: 40  FEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDA 99

Query: 67  ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVS 125
           A A      P   +    + +G              Y + G L  A  +F  +  R+ VS
Sbjct: 100 AAALASIPFPPSVVSFTSLLRG--------------YVRHGLLADAIRLFQQMPERNHVS 145

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           Y +L+ G       +E+  LF EM       DVV++   +S                   
Sbjct: 146 YTVLLGGLLDAGRVNEARRLFDEMP----DRDVVAWTAMLSG------------------ 183

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
                            Y ++GRI  A  +FD +P ++  SW  +I GY   GEV+ A  
Sbjct: 184 -----------------YCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARK 226

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           LFE M E     + VS+ A+L      G VE   + F+ M      P     A MV   G
Sbjct: 227 LFEVMPER----NEVSWTAMLVGYIQAGHVEDAAELFNAMPE---HPVAACNAMMVG-FG 278

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           + G M DA K +     E D   W A++ A
Sbjct: 279 QRG-MVDAAKTVFEKMCERDDGTWSAMIKA 307



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 134/304 (44%), Gaps = 59/304 (19%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           + + P  A+ L       ++VS+ +++  + ++ L   A++L ++MP  N    +V L  
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L A                                       G +N A+ +F+ +  RD
Sbjct: 153 LLDA---------------------------------------GRVNEARRLFDEMPDRD 173

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            V++  ++ GY Q    +E+ +LF EM     K +VVS+   IS  A    +   +++  
Sbjct: 174 VVAWTAMLSGYCQAGRITEARALFDEMP----KRNVVSWTAMISGYAQNGEVNLARKLFE 229

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
           V   ++  +      ++L  Y ++G ++ A ++F+ +P    A+ N +++G+G  G VD 
Sbjct: 230 VMPERNEVSW----TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDA 285

Query: 243 AINLFEAM--REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           A  +FE M  R+DG      ++ A++ A      + +    F EM    V+P   +Y  +
Sbjct: 286 AKTVFEKMCERDDG------TWSAMIKAYEQNEFLMEALSTFREMLWRGVRP---NYPSV 336

Query: 301 VDLL 304
           + +L
Sbjct: 337 ISIL 340



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +FH    K+IV WN+M+  +AQ+ L  +AL +  +M +    P+ +T
Sbjct: 377 MYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGIT 436

Query: 61  LTNVLPACARGHFLRPGKEI 80
               L AC+    ++ G+EI
Sbjct: 437 YIGALTACSYTGKVKEGREI 456


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  290 bits (742), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 231/393 (58%), Gaps = 2/393 (0%)

Query: 24  VSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHAR 83
           VSWN+++    +   E  AL   ++M   +   +  TL +VL + A    ++    +H  
Sbjct: 7   VSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCL 66

Query: 84  IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSES 142
           II+ G      + NAL DMYAK G L+ A  VF+ +  +D VS+  L+ GYS      E+
Sbjct: 67  IIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEA 126

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
           + LF +MR+ G+  D ++    +SACA L  +  G++IH   ++  L + L V NS++  
Sbjct: 127 IKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTM 186

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y + G I  AN+ FD +P +D  SW  LI+GY   G    ++  ++ M   G   D +++
Sbjct: 187 YAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITF 246

Query: 263 IAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
           I +L ACSH GL+  G+ YF+ M +   +KP   HYACM+DLLGR+G + +A  L+  + 
Sbjct: 247 IGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMV 306

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381
           V PDA +W ALL ACR++  +ELG  AA++LF L+P +   Y++LSNMY+ AGKW++A++
Sbjct: 307 VAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAAR 366

Query: 382 VRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +R LM+SR   K PG SW++T  +V  F+  DR
Sbjct: 367 IRRLMRSRGICKEPGYSWIETNSKVSTFMSEDR 399



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 136/262 (51%), Gaps = 21/262 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  +   A  +F  + +K++VSW ++V  ++ N    +A++L  +M I   +P+ + 
Sbjct: 85  MYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIA 144

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + +VL ACA    +  G++IHA +++ GL   L + N+L  MYAKCG +  A   F N+ 
Sbjct: 145 VASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMP 204

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK- 178
            RD +S+  LIVGY+Q      SL  + +M   G K D ++F+G + AC++   +  G+ 
Sbjct: 205 TRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRA 264

Query: 179 ------EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
                 +++G+      +        ++D   RSG++  A  + + + V  D+  W  L+
Sbjct: 265 YFEAMDKVYGIKPGPEHYA------CMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALL 318

Query: 232 LGYGM-----LGEVDTAINLFE 248
               +     LGE+  A NLFE
Sbjct: 319 AACRVHKELELGEM-AAKNLFE 339



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 111/216 (51%), Gaps = 1/216 (0%)

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           + F DEVS+N LI+G  +     ++LS F +MR   MK D  +    +++ A++  ++  
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNA 60

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
             +H + I+     +  V N+++D Y + G++D A  +F  +  KD  SW +L+ GY   
Sbjct: 61  ISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHN 120

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G  + AI LF  MR  GV  D ++  ++L+AC+   +++ G++    +    ++ +    
Sbjct: 121 GSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVD 180

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
             +V +  + G + DA +   N+P   D   W AL+
Sbjct: 181 NSLVTMYAKCGSIVDANRAFDNMPTR-DVISWTALI 215


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  290 bits (742), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 153/420 (36%), Positives = 246/420 (58%), Gaps = 10/420 (2%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQ---LVREMPIHNEFP- 56
            +Y+K  +  EA +L H   + ++ SWNA++  + ++    KAL+   L+ EM I    P 
Sbjct: 1042 LYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGI----PI 1097

Query: 57   NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
            + +TL   + A      L+ GK+I A  I+ G N DL++++ + DMY KCG +  A  +F
Sbjct: 1098 DEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELF 1157

Query: 117  -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
              IS  DEV++  +I GY +  D   +LS++  MR+ G++ D  +F   I A + L A++
Sbjct: 1158 GEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALE 1217

Query: 176  QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            QGK+IH   ++       FV  S++D Y + G +  A ++F  + V+    WN ++LG  
Sbjct: 1218 QGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLA 1277

Query: 236  MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTE 294
              G VD A+NLF  M+ +G+  D V++I +L+ACSH GL  +  KYFD M +   + P  
Sbjct: 1278 QHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEI 1337

Query: 295  MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
             HY+C+VD LGRAG +++A  +I ++P +  A+++ ALLGACR  G+ E     A+ L  
Sbjct: 1338 EHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLA 1397

Query: 355  LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            L P     Y+LLSN+YA + +WD+ +  R +MK +  KK+PG SW+  +++V  FVV+DR
Sbjct: 1398 LDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDR 1457



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 189/351 (53%), Gaps = 13/351 (3%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MY+K+     A   F N  E +++SWN M++++AQN LE++A+   R++      P+  T
Sbjct: 938  MYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFT 997

Query: 61   LTNVLPACA---RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
            L +VL AC+    G +   G ++H   I+ G+  D F++ AL D+Y+K G ++ A+ + +
Sbjct: 998  LASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLH 1057

Query: 118  ISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
              +  D  S+N ++ GY +++   ++L  FS M  +G+  D ++   AI A   L  +KQ
Sbjct: 1058 GKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQ 1117

Query: 177  GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            GK+I    I+   +  L+V++ +LD Y + G +  A ++F  +   D  +W T+I GY  
Sbjct: 1118 GKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIE 1177

Query: 237  LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM- 295
             G+ D A++++  MR  GV  D  ++  ++ A S    +E+GK    ++ A+ VK     
Sbjct: 1178 NGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGK----QIHANVVKLDYSL 1233

Query: 296  -HY--ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             H+    +VD+  + G ++DA ++ + + V      W A+L     +G+V+
Sbjct: 1234 DHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAMLLGLAQHGHVD 1283



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 6/187 (3%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF-RDEVSYNILIVG 132
           L+ GK  HARI+  G   D +LTN L  MY+KCG L  A+ VF+ S  RD V++N ++  
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 133 YSQTSDCS-----ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
           Y+Q +D S     E   LF  +R  G     ++    +  C     ++  + +HG  ++ 
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                LFV+ ++++ Y + G +  A  +FD +P +D+  WN ++  Y      D A+  F
Sbjct: 747 GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 248 EAMREDG 254
            A    G
Sbjct: 807 SAFHRSG 813



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 152/341 (44%), Gaps = 32/341 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQ--NRLELKALQLVREMPIHNEFPNS 58
           MY+K      A  +F   +++++V+WN+++A +AQ  +      L+  R   +  EF  S
Sbjct: 655 MYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFS 714

Query: 59  VT---LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           +T   L  +L  C    F++  + +H   ++ G   DLF++ AL ++Y K G +  A+ +
Sbjct: 715 ITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLL 774

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ +  RD V +N+++  Y + S   E+L  FS     G   D  +    I      + +
Sbjct: 775 FDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVN--SDV 832

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
              ++ H   ++ +       A  +  F       D  + IF         +WN  +  +
Sbjct: 833 SNNRKRHAEQVKAY-------AMKMFPF-------DQGSNIF---------AWNKKLTEF 869

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G++  AI+ F+ +    +G+D V+ + IL+A      ++ G++    +   S  P  
Sbjct: 870 LHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVV 929

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                ++++  +AG++  A K   N P E D   W  ++ +
Sbjct: 930 PVSNSLMNMYSKAGVVYAAEKTFINSP-ELDLISWNTMISS 969



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 142/341 (41%), Gaps = 38/341 (11%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            +Y K     +A  LF  + E++ V WN M+  + +N  + +AL+          FP+   
Sbjct: 761  IYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSN 820

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA-KCGCLNLAQNVFNIS 119
            L  V+        +   ++ HA  ++                YA K    +   N+F   
Sbjct: 821  LHCVIGGVNSD--VSNNRKRHAEQVKA---------------YAMKMFPFDQGSNIF--- 860

Query: 120  FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
                 ++N  +  +        ++  F  +    + HD V+ +  +SA      +  G++
Sbjct: 861  -----AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQ 915

Query: 180  IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            IH + I+      + V+NS+++ Y+++G +  A K F   P  D  SWNT+I  Y     
Sbjct: 916  IHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNL 975

Query: 240  VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF---DEMQADSVK----P 292
               AI  F  +  DG+  D  +  ++L ACS G   ++G +YF    ++   ++K     
Sbjct: 976  EMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYFTLGSQVHVYAIKCGIIN 1031

Query: 293  TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                   ++DL  + G M++A  L+     + D   W A++
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHG-KYDFDLASWNAIM 1071



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 6/170 (3%)

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           +A +K GK  H   +        ++ N+++  Y++ G +  A ++FD    +D  +WN++
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 231 ILGYGMLGE-----VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           +  Y    +     V     LF  +RE G     ++   +L  C   G V+  +      
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 286 QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                +        +V++  + GL+  A  L   +P E DA +W  +L A
Sbjct: 744 VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKA 792


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/396 (37%), Positives = 235/396 (59%), Gaps = 7/396 (1%)

Query: 22  NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81
           N+VSW AM++ F QN  + +A+ L  EM      PN  T + +L A      + P  E+H
Sbjct: 365 NVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALP---VISPS-EVH 420

Query: 82  ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCS 140
           A++++        +  AL D Y K G ++ A  VF+ I  +D V+++ ++ GY+Q  +  
Sbjct: 421 AQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETE 480

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACA-NLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
            ++ +FSE+   G+K +  +F   ++ CA   A++ QGK+ HG  I+  L + L V++++
Sbjct: 481 AAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSAL 540

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
           L  Y + G I+ A ++F     KD  SWN++I GY   G+   A+++F+ M++  V  D 
Sbjct: 541 LTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDS 600

Query: 260 VSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
           V++I +  AC+H GLVE+G+KYFD M  D  + PT+ H +CMVDL  RAG +E A+K+I 
Sbjct: 601 VTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVID 660

Query: 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDE 378
           N+P    + IW  +L ACR++   ELG  AAE +  + P+    Y+LLSNMYAE+G W E
Sbjct: 661 NMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQE 720

Query: 379 ASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            +KVR+LM  R  KK PG SW++ +++   F+  DR
Sbjct: 721 RAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDR 756



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 170/344 (49%), Gaps = 8/344 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     +A  LF     K++V+WN+M++ +A N L+L+AL +   M +++   +  +
Sbjct: 242 LYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESS 301

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS- 119
             +++  CA    LR  +++H  +++ G  FD  +  AL   Y+KC  +  A  +F  + 
Sbjct: 302 FASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETG 361

Query: 120 -FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              + VS+  +I G+ Q     E++ LFSEM+  G++ +  ++   ++A   ++      
Sbjct: 362 FLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISP----S 417

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+H   ++ +      V  ++LD Y + G++D A K+F  +  KD  +W+ ++ GY   G
Sbjct: 418 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAG 477

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTAC-SHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           E + AI +F  + + GV  +  ++ +IL  C +    + +GK++        +  +    
Sbjct: 478 ETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVS 537

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           + ++ +  + G +E A ++ K    E D   W +++     +G 
Sbjct: 538 SALLTMYAKKGHIESAEEVFKR-QREKDLVSWNSMISGYAQHGQ 580



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 103/435 (23%), Positives = 190/435 (43%), Gaps = 58/435 (13%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K S   +   +F  + E+N+V+W  +++ +A+N L  + L L   M      PNS T 
Sbjct: 142 YMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTF 201

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
              L   A       G ++H  +++ GL+  + ++N+L ++Y KCG +  A+ +F+    
Sbjct: 202 AAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEV 261

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  V++N +I GY+      E+L +F  MRL  ++    SF   I  CANL  ++  +++
Sbjct: 262 KSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQL 321

Query: 181 H------GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF-DCLPVKDSASWNTLILG 233
           H      G    +++ T L VA      Y++   +  A ++F +   + +  SW  +I G
Sbjct: 322 HCSVVKYGFVFDQNIRTALMVA------YSKCMAMLDALRLFKETGFLGNVVSWTAMISG 375

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-------HG-------------- 272
           +      + A+ LF  M+  GV  +  +Y  ILTA         H               
Sbjct: 376 FLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVG 435

Query: 273 ----------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP- 321
                     G V++  K F  +    +    + ++ M+    +AG  E A+K+   L  
Sbjct: 436 TALLDAYVKLGKVDEAAKVFSGIDNKDI----VAWSAMLAGYAQAGETEAAIKIFSELTK 491

Query: 322 --VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ----HCGYYILLSNMYAEAGK 375
             V+P+   + ++L  C       +G     H F +K +     C    LL+ MYA+ G 
Sbjct: 492 GGVKPNEFTFSSILNVCAA-TTASMGQGKQFHGFAIKSRLDSSLCVSSALLT-MYAKKGH 549

Query: 376 WDEASKVRELMKSRE 390
            + A +V +  + ++
Sbjct: 550 IESAEEVFKRQREKD 564



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 175/379 (46%), Gaps = 21/379 (5%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
           A SSR   A  LF    +++  S+ +++  F+++    +A +L   +       +    +
Sbjct: 42  ASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFS 101

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           +VL   A       G+++H + I+ G   D+ +  +L D Y K       +NVF+ +  R
Sbjct: 102 SVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKER 161

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + V++  LI GY++ S   E L+LF  M+  G + +  +F  A+   A      +G ++H
Sbjct: 162 NVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVH 221

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
            V ++  L   + V+NS+++ Y + G +  A  +FD   VK   +WN++I GY   G   
Sbjct: 222 TVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDL 281

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            A+ +F +MR + V     S+ +I+  C++     K  ++ +++    VK     Y  + 
Sbjct: 282 EALGMFYSMRLNHVRLSESSFASIIKLCAN----LKELRFTEQLHCSVVK-----YGFVF 332

Query: 302 DLLGRAGLME---------DAVKLIKNLPVEPDANIWGALL-GACRIYGNVE-LGAWAAE 350
           D   R  LM          DA++L K      +   W A++ G  +  G  E +G ++  
Sbjct: 333 DQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEM 392

Query: 351 HLFMLKPQHCGYYILLSNM 369
               ++P    Y ++L+ +
Sbjct: 393 KRKGVRPNEFTYSVILTAL 411



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F    EK++VSWN+M++ +AQ+   +KAL + +EM       +SVT
Sbjct: 543 MYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVT 602

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNA-LTDMYAKCGCLNLAQNVFN 117
              V  AC     +  G++    ++R          N+ + D+Y++ G L  A  V +
Sbjct: 603 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVID 660


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 249/441 (56%), Gaps = 33/441 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K +   +A  LF  I  ++++SWN M++ +AQ+    +A +L  E P+ + F    T 
Sbjct: 198 YVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVF----TW 253

Query: 62  TNVLPACARGHFLRPGKEI------------------HARIIRKGLNFDLFLT------- 96
           T ++ A  +   L   + +                  +A+  R  +  +LF         
Sbjct: 254 TAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIG 313

Query: 97  --NALTDMYAKCGCLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
             N +   Y + G L  A+N+F++   RD VS+  +I GY+Q     E++++  EM+  G
Sbjct: 314 SWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDG 373

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
              +  +F  A+SACA++AA++ GK++HG  +R        V N+++  Y + G ID A 
Sbjct: 374 ESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAY 433

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
            +F  +  KD  SWNT++ GY   G    A+ +FE+M   GV  D ++ + +L+ACSH G
Sbjct: 434 DVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTG 493

Query: 274 LVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
           L ++G +YF  M  D  + P   HYACM+DLLGRAG +E+A  LI+N+P EPDA  WGAL
Sbjct: 494 LTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGAL 553

Query: 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392
           LGA RI+GN+ELG  AAE +F ++P + G Y+LLSN+YA +G+W + SK+R  M+    +
Sbjct: 554 LGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQ 613

Query: 393 KNPGCSWVQTRDEVQDFVVND 413
           K PG SWV+ ++++  F V D
Sbjct: 614 KTPGYSWVEVQNKIHTFTVGD 634



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 146/300 (48%), Gaps = 23/300 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA++ R  +A  LF ++ EK++VSWNAM++ + ++    +A  +   MP      NS++ 
Sbjct: 105 YARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP----HKNSISW 160

Query: 62  TNVLPACARGHFLRPGK-EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +L A     ++R G+ E   R+     +++L   N L   Y K   L  A+ +F+ I 
Sbjct: 161 NGLLAA-----YVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIP 215

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+N +I GY+Q  D S++  LF E  +     DV ++   + A      + + + 
Sbjct: 216 VRDLISWNTMISGYAQDGDLSQARRLFEESPV----RDVFTWTAMVYAYVQDGMLDEARR 271

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +     +K   ++    N ++  Y +  R+D+  ++F+ +P  +  SWN +I GY   G+
Sbjct: 272 VFDEMPQKREMSY----NVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGD 327

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +  A NLF+ M +     D VS+ AI+   +  GL E+      EM+ D        + C
Sbjct: 328 LAQARNLFDMMPQR----DSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCC 383



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 167/378 (44%), Gaps = 66/378 (17%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  +  +N VS+NAM++ + +N     A  L  +MP  + F  ++ LT      AR   
Sbjct: 55  VFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGY----ARNRR 110

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           LR  + +   +  K    D+   NA+   Y + G ++ A++VF+ +  ++ +S+N L+  
Sbjct: 111 LRDARMLFDSMPEK----DVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAA 166

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y ++    E+  LF        K D                                   
Sbjct: 167 YVRSGRLEEARRLFES------KSD---------------------------------WE 187

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           L   N ++  Y +   +  A ++FD +PV+D  SWNT+I GY   G++  A  LF    E
Sbjct: 188 LISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLF----E 243

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
           +    D  ++ A++ A    G++++ ++ FDEM     +  EM Y  M+    +   M+ 
Sbjct: 244 ESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMP----QKREMSYNVMIAGYAQYKRMDM 299

Query: 313 AVKLIKNLPVEPDANIWGALL-GACRIYGNVELGAWAAEHLFMLKPQH--CGYYILLSNM 369
             +L + +P  P+   W  ++ G C+   N +L    A +LF + PQ     +  +++  
Sbjct: 300 GRELFEEMPF-PNIGSWNIMISGYCQ---NGDLA--QARNLFDMMPQRDSVSWAAIIAG- 352

Query: 370 YAEAGKWDEASKVRELMK 387
           YA+ G ++EA  +   MK
Sbjct: 353 YAQNGLYEEAMNMLVEMK 370



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 118/291 (40%), Gaps = 55/291 (18%)

Query: 107 GCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI 165
           G  +LA  VF+ +  R+ VSYN +I GY + +  S +  LF +M                
Sbjct: 47  GHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMP--------------- 91

Query: 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
                                   H  LF  N +L  Y R+ R+  A  +FD +P KD  
Sbjct: 92  ------------------------HKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVV 127

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           SWN ++ GY   G VD A ++F+ M       + +S+  +L A    G +E+ ++ F+  
Sbjct: 128 SWNAMLSGYVRSGHVDEARDVFDRMPHK----NSISWNGLLAAYVRSGRLEEARRLFESK 183

Query: 286 QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
               +        C++    +  ++ DA +L   +PV  D   W  ++      G++   
Sbjct: 184 SDWELISCN----CLMGGYVKRNMLGDARQLFDQIPVR-DLISWNTMISGYAQDGDLS-- 236

Query: 346 AWAAEHLFMLKP-QHCGYYILLSNMYAEAGKWDEASKV-RELMKSREAKKN 394
              A  LF   P +    +  +   Y + G  DEA +V  E+ + RE   N
Sbjct: 237 --QARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYN 285



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 2/137 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F  +  K+IVSWN M+A +A++    +AL +   M      P+ +T
Sbjct: 422 MYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEIT 481

Query: 61  LTNVLPACARGHFLRPGKE-IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           +  VL AC+       G E  H+     G+  +      + D+  + GCL  AQN+  N+
Sbjct: 482 MVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNM 541

Query: 119 SFRDEVSYNILIVGYSQ 135
            F  + +    ++G S+
Sbjct: 542 PFEPDAATWGALLGASR 558



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 20/166 (12%)

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           ++ H V   K + TH+           R+G  DLA  +FD +P+++S S+N +I GY   
Sbjct: 29  EDPHTVKCTKAISTHM-----------RNGHCDLALCVFDAMPLRNSVSYNAMISGYLRN 77

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
            +   A +LF+ M       D  S+  +LT  +    +   +  FD M    V    + +
Sbjct: 78  AKFSLARDLFDKMPHK----DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDV----VSW 129

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             M+    R+G +++A  +   +P   ++  W  LL A    G +E
Sbjct: 130 NAMLSGYVRSGHVDEARDVFDRMP-HKNSISWNGLLAAYVRSGRLE 174


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 239/414 (57%), Gaps = 10/414 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++ R  EA  LF  + ++N+VSW AM++ +AQN     A +L   MP  NE   +  L
Sbjct: 184 YCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAML 243

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
              + A   GH      E  A +        +   NA+   + + G ++ A+ VF  +  
Sbjct: 244 VGYIQA---GHV-----EDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCE 295

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD+ +++ +I  Y Q     E+LS F EM   G++ +  S +  ++ CA LA +  G+E+
Sbjct: 296 RDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREV 355

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   +R      +F  ++++  Y + G +D A ++F     KD   WN++I GY   G  
Sbjct: 356 HAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLG 415

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYAC 299
           + A+ +F  MR  G+  D ++YI  LTACS+ G V++G++ F+ M  +S ++P   HY+C
Sbjct: 416 EQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSC 475

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGR+GL+E+A  LIKN+PVEPDA IWGAL+GACR++ N E+  +AA+ L  L+P +
Sbjct: 476 MVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGN 535

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G Y+LLS++Y   G+W++ASK+R+ + SR   K+PGCSW++    V  F   D
Sbjct: 536 AGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGD 589



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 131/332 (39%), Gaps = 75/332 (22%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPI-----HNEFPNSVTLT-NVLP-- 66
           F  +  +   S+NA++A + +NRL   AL L R MP      +N   + ++L    LP  
Sbjct: 40  FEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDA 99

Query: 67  ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVS 125
           A A      P   +    + +G              Y + G L  A  +F  +  R+ VS
Sbjct: 100 AAALASIPFPPSVVSFTSLLRG--------------YVRHGLLADAIRLFQQMPERNHVS 145

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           Y +L+ G       +E+  LF EM       DVV++   +S                   
Sbjct: 146 YTVLLGGLLDAGRVNEARRLFDEMP----DRDVVAWTAMLSG------------------ 183

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
                            Y ++GRI  A  +FD +P ++  SW  +I GY   GEV+ A  
Sbjct: 184 -----------------YCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARK 226

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC--MVDL 303
           LFE M E     + VS+ A+L      G VE   + F+ M    V       AC  M+  
Sbjct: 227 LFEVMPER----NEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVA------ACNAMMVG 276

Query: 304 LGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            G+ G M DA K +     E D   W A++ A
Sbjct: 277 FGQRG-MVDAAKTVFEKMCERDDGTWSAMIKA 307



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 134/304 (44%), Gaps = 59/304 (19%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           + + P  A+ L       ++VS+ +++  + ++ L   A++L ++MP  N    +V L  
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L A                                       G +N A+ +F+ +  RD
Sbjct: 153 LLDA---------------------------------------GRVNEARRLFDEMPDRD 173

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            V++  ++ GY Q    +E+ +LF EM     K +VVS+   IS  A    +   +++  
Sbjct: 174 VVAWTAMLSGYCQAGRITEARALFDEMP----KRNVVSWTAMISGYAQNGEVNLARKLFE 229

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
           V   ++  +      ++L  Y ++G ++ A ++F+ +P    A+ N +++G+G  G VD 
Sbjct: 230 VMPERNEVSW----TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDA 285

Query: 243 AINLFEAM--REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           A  +FE M  R+DG      ++ A++ A      + +    F EM    V+P   +Y  +
Sbjct: 286 AKTVFEKMCERDDG------TWSAMIKAYEQNEFLMEALSTFREMLWRGVRP---NYPSV 336

Query: 301 VDLL 304
           + +L
Sbjct: 337 ISIL 340



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +FH    K+IV WN+M+  +AQ+ L  +AL +  +M +    P+ +T
Sbjct: 377 MYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGIT 436

Query: 61  LTNVLPACARGHFLRPGKEI 80
               L AC+    ++ G+EI
Sbjct: 437 YIGALTACSYTGKVKEGREI 456


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/420 (35%), Positives = 249/420 (59%), Gaps = 9/420 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKAL----QLVREMPIHNEFP 56
           MYAK +    A  +F  + E+N+VSWN+M+  F  N L  +A+     ++RE  +    P
Sbjct: 289 MYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTV---IP 345

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N V++++VL ACA    L  G+++H  +++ GL    ++ N+L DMY KC   +    +F
Sbjct: 346 NEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLF 405

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
             +  RD V++N+L++G+ Q     E+ + F  MR  G+  D  SF   + + A+LAA+ 
Sbjct: 406 QCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALH 465

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           QG  IH   I+     ++ +  S++  Y + G +  A ++F+ +   +  SW  +I  Y 
Sbjct: 466 QGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQ 525

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTE 294
           + G  +  I LFE M  +G+    V+++ +L+ACSH G VE+G  +F+ M+    + P  
Sbjct: 526 LHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGP 585

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYACMVDLLGRAG +++A + I+++P++P  ++WGALLGACR YGN+++G  AAE LF 
Sbjct: 586 EHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFE 645

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           ++P + G Y+LL+NM   +G+ +EA++VR LM     +K PGCSW+  ++    F  +DR
Sbjct: 646 MEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDR 705



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 203/406 (50%), Gaps = 17/406 (4%)

Query: 1   MYAKSSRPAEASYLF----HNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP 56
           +YAK     +A  LF    H+   K IV+W +++ + +   + L+AL L  +M     +P
Sbjct: 186 LYAKCGCLNQALLLFSITHHHF--KTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYP 243

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N  T +++L A A    +  G+++H+ I + G + ++F+  AL DMYAKC  ++ A  VF
Sbjct: 244 NQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVF 303

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLAAI 174
           + +  R+ VS+N +IVG+   +    ++ +F + +R   +  + VS    +SACAN+  +
Sbjct: 304 DQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGL 363

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G+++HGV ++  L    +V NS++D Y +    D   K+F C+  +D  +WN L++G+
Sbjct: 364 NFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGF 423

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
               + + A N F  MR +G+  D  S+  +L + +    + +G    D++         
Sbjct: 424 VQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNM 483

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI--WGALLGACRIYGNVELGAWAAEHL 352
                ++ +  + G + DA ++ + +    D N+  W A++ A +++G         EH+
Sbjct: 484 CILGSLITMYAKCGSLVDAYQVFEGI---EDHNVISWTAMISAYQLHGCANQVIELFEHM 540

Query: 353 FM--LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPG 396
               ++P H  +  +LS   +  G+ +E       MK +    NPG
Sbjct: 541 LSEGIEPSHVTFVCVLSAC-SHTGRVEEGLAHFNSMK-KIHDMNPG 584



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 143/277 (51%), Gaps = 5/277 (1%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS- 119
           L ++L    +   L+   +IH +II        FL N L ++YAKCGCLN A  +F+I+ 
Sbjct: 145 LNHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITH 204

Query: 120 --FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
             F+  V++  LI   S  +   ++LSLF++MR  G   +  +F   +SA A    +  G
Sbjct: 205 HHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHG 264

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           +++H +  +     ++FV  +++D Y +   +  A ++FD +P ++  SWN++I+G+   
Sbjct: 265 QQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHN 324

Query: 238 GEVDTAINLF-EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
              D A+ +F + +RE  V  + VS  ++L+AC++ G +  G++    +    + P    
Sbjct: 325 NLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYV 384

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
              ++D+  +    ++ VKL + +  + D   W  L+
Sbjct: 385 MNSLMDMYFKCRFFDEGVKLFQCVG-DRDVVTWNVLV 420


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 149/433 (34%), Positives = 250/433 (57%), Gaps = 39/433 (9%)

Query: 20  EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79
           E NIVSWN +++ F ++    +A+ + ++M      P+ VT+++VLP+      L  G++
Sbjct: 214 EPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQ 273

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCG-------------------------------C 108
           IH  +I++GL  D  + +A+ DMY K G                                
Sbjct: 274 IHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGL 333

Query: 109 LNLAQNVFNISFRDE------VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM 162
           ++ A  +F + F+++      VS+  +I G +Q     E+L LF EM++ G+K + V+  
Sbjct: 334 VDKALEMFGL-FKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIP 392

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
             + AC N+AA+  G+  HG  +R HL   + V ++++D Y + GRI ++  +F+ +P K
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTK 452

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282
           +   WN+L+ GY M G+    +++FE++    +  D +S+ ++L+AC   GL ++G KYF
Sbjct: 453 NLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512

Query: 283 DEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           + M  +  +KP   HY+CMV+LLGRAG +++A  LIK +P EPD+ +WGALL +CR+  N
Sbjct: 513 NMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNN 572

Query: 342 VELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQ 401
           V+L   AA+ LF L+P++ G Y+L+SN+YA  G W E   +R  M+S   KKNPGCSW+Q
Sbjct: 573 VDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQ 632

Query: 402 TRDEVQDFVVNDR 414
            +++V   +  D+
Sbjct: 633 VKNKVYTLLACDK 645



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 152/332 (45%), Gaps = 36/332 (10%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +A  +  +I +  + S+++++    + +L  +++ +   M  H   P++  L N+   CA
Sbjct: 68  DADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCA 127

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
                + GK+IH      GL+ D F+  +L  MY +CG +  A+ VF+ +S +D V+ + 
Sbjct: 128 ELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSA 187

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA--------------------- 167
           L+ GY++     E + + SEM   G++ ++VS+ G +S                      
Sbjct: 188 LLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLG 247

Query: 168 -CANLAAIKQ-------------GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
            C +   +               G++IHG  I++ L     V +++LD Y +SG +    
Sbjct: 248 FCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGII 307

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
           K+FD   + ++   N  I G    G VD A+ +F   +E  +  + VS+ +I+  C+  G
Sbjct: 308 KLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNG 367

Query: 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
              +  + F EMQ   VKP  +    M+   G
Sbjct: 368 KDIEALELFREMQVAGVKPNRVTIPSMLPACG 399



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 3/229 (1%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNI--LIVGYSQT 136
           + HARI++ G   D +++  L   Y+   C N A  +   S  D   Y+   LI   ++ 
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQ-SIPDPTVYSFSSLIYALTKA 94

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
              S+S+ +FS M   G+  D          CA L+A K GK+IH V     L    FV 
Sbjct: 95  KLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQ 154

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
            S+   Y R GR+  A K+FD +  KD  + + L+ GY   G ++  + +   M + G+ 
Sbjct: 155 GSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIE 214

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
            + VS+  IL+  +  G  ++    F +M      P ++  + ++  +G
Sbjct: 215 PNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVG 263


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 156/450 (34%), Positives = 249/450 (55%), Gaps = 37/450 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +Y    R   A  +F N+ E++IVSWN ++A + QN L+  AL+    M   +   P++ 
Sbjct: 422 LYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAF 481

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
           T+T+VL ACA    L+ GK++H+ I+R G+     + NAL   YAK G +  A+ + +  
Sbjct: 482 TVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQA 541

Query: 118 -------ISF-------------------------RDEVSYNILIVGYSQTSDCSESLSL 145
                  ISF                         RD +++  +IVGY Q     E++ L
Sbjct: 542 VVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMEL 601

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           F  M L+G + +  +    +SACA+LA +  GK+IH   IR      + V+N+I+  Y R
Sbjct: 602 FRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYAR 661

Query: 206 SGRIDLANKIFDCLP-VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           SG + LA ++FD +   K++ +W ++I+     G  + A+ LFE M   GV  D ++Y+ 
Sbjct: 662 SGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVG 721

Query: 265 ILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
           +L+AC+H G V+KGK+Y+++MQ +  + P   HYACMVDL  RAGL+ +A + I+ +PV 
Sbjct: 722 VLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVA 781

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVR 383
           PD  +WG+LL ACR+  N +L   AA  L  + P + G Y  L+N+Y+  G+W++A+++ 
Sbjct: 782 PDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIW 841

Query: 384 ELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +L K +  KK  G SW   R +V  F  +D
Sbjct: 842 KLRKDKGVKKETGFSWTHVRGKVHVFGADD 871



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 199/462 (43%), Gaps = 81/462 (17%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAKS R  +A  +F  + +++ VSW  M+    ++     A++   +M      P+  T
Sbjct: 290 LYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFT 349

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---- 116
           LTNVL +CA       G+++H  +++ GL+  + + N++  MY KCG    A+ VF    
Sbjct: 350 LTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQ 409

Query: 117 ----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                       N+  R  VS+N +I GY+Q      +L  FS 
Sbjct: 410 VRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSR 469

Query: 149 M-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           M     M+ D  +    +SACANL  +K GK++H   +R  +     + N+++  Y +SG
Sbjct: 470 MLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSG 529

Query: 208 RIDLANK---------------------------------IFDCLPVKDSASWNTLILGY 234
            ++ A +                                 IFD +  +D  +W  +I+GY
Sbjct: 530 SVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGY 589

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGK----KYFDEMQAD 288
              G+ D A+ LF +M    +G +P S+   A+L+AC+    ++ GK    K    +Q  
Sbjct: 590 HQNGQNDEAMELFRSMIL--IGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQ 647

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWA 348
           SV  +      ++ +  R+G +  A ++   +    +   W +++ A   +G  E     
Sbjct: 648 SVSVSN----AIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVL 703

Query: 349 AEHLFM--LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
            E +    +KP H  Y  +LS   A AG  D+  +  E M++
Sbjct: 704 FEEMVRVGVKPDHITYVGVLSAC-AHAGFVDKGKRYYEQMQN 744



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 143/304 (47%), Gaps = 14/304 (4%)

Query: 94  FLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL 152
           F  N+L  +YAK G L  A  VF  +  RD VS+ I+IVG +++    +++  F +M   
Sbjct: 282 FTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSE 341

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G      +    +S+CA + A   G+++H   ++  L + + VANS+L  Y + G  + A
Sbjct: 342 GFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETA 401

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
             +F+ + V+  +SWN ++  Y   G ++ A+++FE M E  +    VS+  I+   +  
Sbjct: 402 RAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSI----VSWNTIIAGYNQN 457

Query: 273 GLVEKGKKYFDEM-QADSVKP-----TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
           GL     K+F  M  A S++P     T +  AC    + + G    +  L   +P    +
Sbjct: 458 GLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPC--SS 515

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
            I  AL+      G+VE      +   +       +  LL   Y + G   +A ++ ++M
Sbjct: 516 QIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEG-YVKLGDTKQAREIFDIM 574

Query: 387 KSRE 390
            +R+
Sbjct: 575 NNRD 578


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 161/418 (38%), Positives = 250/418 (59%), Gaps = 5/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNS 58
           +YA     + A  LF  +  + N+  WN ++  +A++     A++L REM       P++
Sbjct: 107 LYASCGLVSVARRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDN 166

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T   VL ACA    L  G+E+H R++R     D+F+   L DMYAKCGC++ A  VF+ 
Sbjct: 167 FTYPPVLKACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDS 226

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
            + RD V +N +I    Q    +E+L+L   M   G+   +V+ + AISA A+  A+ +G
Sbjct: 227 TTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRG 286

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           +E+HG   R+   +   +  S+LD Y +SG + +A  +FD L  ++  SWN +I G+GM 
Sbjct: 287 RELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMH 346

Query: 238 GEVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEM 295
           G  D A  LF  MR E  V  D ++++ +L+AC+HGG+V++ K+ FD M    S+KP   
Sbjct: 347 GHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQ 406

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY C+VD+LG +G  ++A  +IK + V+PD+ IWGALL  C+I+ NVEL   A   L  L
Sbjct: 407 HYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIEL 466

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +P+  G Y+LLSN+YA++GKW+EA++VR+LM +R  KK   CSW++ + +   F+V D
Sbjct: 467 EPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGD 524



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 161/376 (42%), Gaps = 60/376 (15%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N      +L +C     +RPG+++HAR++  GL  D  L   L D+YA CG +++A+ +F
Sbjct: 62  NHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLF 121

Query: 117 NISFRDEVS-------YNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISAC 168
                DE+        +N+LI  Y++      ++ L+ EM   G M+ D  ++   + AC
Sbjct: 122 -----DEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKAC 176

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
           A L  +  G+E+H   +R      +FV   ++D Y + G +D A  +FD   V+D+  WN
Sbjct: 177 AALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWN 236

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI------------------------- 263
           ++I   G  G    A+ L   M  +G+    V+ +                         
Sbjct: 237 SMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRR 296

Query: 264 ----------AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
                     ++L   +  G V   +  FD++    +    + +  M+   G  G  + A
Sbjct: 297 GFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHREL----ISWNAMICGFGMHGHADHA 352

Query: 314 VKLIKNL----PVEPDANIWGALLGACRIYGNVELGAWAAE---HLFMLKPQHCGYYILL 366
            +L + +     V PD   +  +L AC   G V+      +    ++ +KP    +Y  L
Sbjct: 353 CELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPM-VQHYTCL 411

Query: 367 SNMYAEAGKWDEASKV 382
            ++   +G++ EAS V
Sbjct: 412 VDVLGHSGRFKEASDV 427


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/414 (37%), Positives = 243/414 (58%), Gaps = 15/414 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++     A  LF  + E++IVSWNAM++ +AQN    +A ++  +MP+     N ++ 
Sbjct: 36  YVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMPL----KNGISW 91

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
             +L A  +   +   K    R+    +++ L   N L       G +   +N+F N+  
Sbjct: 92  NGLLAAYVQNGRIEDAK----RLFESKMDWTLVSWNCLMG-----GFVRKRRNLFDNMPQ 142

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD +S++ +I GYSQ     E+L  F EM+    + +  SF  A+S C+N+AA++ G+++
Sbjct: 143 RDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQL 202

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++    T  +V N++L  Y + G ID A   F  +  KD  SWNT+I GY   G  
Sbjct: 203 HCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFG 262

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
           + A+ +FE M+  G+  D  + +++L ACSH GLV++G +YF  M  D  +    +HY C
Sbjct: 263 EEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTC 322

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGRAG +E+A  L+KN+P EPDA  WGALLGA RI+GN ELG  AA+ +F ++P +
Sbjct: 323 MVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEPHN 382

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G YILLS +YA +G+W +A K+R  M+++  KK PG SW++ ++++  F V D
Sbjct: 383 SGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGD 436



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 2/143 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA   F  I EK++VSWN M+  +A++    +AL +   M      P+  T
Sbjct: 224 MYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDAT 283

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           + +VL AC+    +  G E    + R  G+   L     + D+  + G L  AQN+  N+
Sbjct: 284 MVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNM 343

Query: 119 SFRDEVSYNILIVGYSQTSDCSE 141
            F  + +    ++G S+    +E
Sbjct: 344 PFEPDAATWGALLGASRIHGNTE 366



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 9/133 (6%)

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y R+ + DLA  +FD +P +D  SWN ++ GY    ++ TA  LFE M E     D VS+
Sbjct: 5   YLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPER----DIVSW 60

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
            A+L+  +  G V++ ++ F +M         + +  ++    + G +EDA +L ++  +
Sbjct: 61  NAMLSGYAQNGFVDEAREIFYKMPL----KNGISWNGLLAAYVQNGRIEDAKRLFES-KM 115

Query: 323 EPDANIWGALLGA 335
           +     W  L+G 
Sbjct: 116 DWTLVSWNCLMGG 128



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 18/168 (10%)

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           LF  N +L  Y R+  +  A  +F+ +P +D  SWN ++ GY   G VD A  +F  M  
Sbjct: 26  LFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMPL 85

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
                + +S+  +L A    G +E  K+ F+      +  T + + C++      G +  
Sbjct: 86  K----NGISWNGLLAAYVQNGRIEDAKRLFE----SKMDWTLVSWNCLM-----GGFVRK 132

Query: 313 AVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
              L  N+P + D+  W A++      G  E     A H F+   + C
Sbjct: 133 RRNLFDNMP-QRDSISWSAMIAGYSQNGCSE----EALHFFVEMQRDC 175


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 159/418 (38%), Positives = 251/418 (60%), Gaps = 5/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNS 58
           +YA     + A  +F  +  + N+  WN ++  +A++     A++L R M  +    P++
Sbjct: 112 LYASCGHVSLARRVFDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDN 171

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T   VL ACA    L  G+E+H R++R     D+F+   L DMYAKCGC++ A  VFN 
Sbjct: 172 FTYPPVLKACAALLDLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFND 231

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
            + RD   +N +I    Q    +E+L+L   M   G+   + + + AISA A  +A+ +G
Sbjct: 232 TTIRDAAVWNSMIAACGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRG 291

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           +E+HG   R+   +   +  S+LD Y +SG + +A+ +F+ L  ++  SWN +I G+GM 
Sbjct: 292 RELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMH 351

Query: 238 GEVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEM 295
           G  D A  LF  MR E  V  D ++++ +L+AC+HGG+V++ K+ FD M    S+KPT  
Sbjct: 352 GHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQ 411

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY C+VD+LG +G  ++A  +IK + V+PD+ IWGALL  C+I+ NVEL   A + L  L
Sbjct: 412 HYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIEL 471

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +P+  G Y+LLSN+YAE+GKW+EA++VR+LM +R  KK   CSW++ + +   F+V D
Sbjct: 472 EPEDAGNYVLLSNIYAESGKWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGD 529



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 13/208 (6%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N      +L +C     +RPG+++HAR++  G   D  L   L D+YA CG ++LA+ VF
Sbjct: 67  NHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVF 126

Query: 117 NISFRDEVS-------YNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISAC 168
                DE+        +N+LI  Y++   C  ++ L+  M   G MK D  ++   + AC
Sbjct: 127 -----DEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKAC 181

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
           A L  +  G+E+H   +R +  T +FV   ++D Y + G +D A  +F+   ++D+A WN
Sbjct: 182 AALLDLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWN 241

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVG 256
           ++I   G  G    A+ L   M  +G+ 
Sbjct: 242 SMIAACGQNGRPAEALTLCRNMAAEGIA 269


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 150/407 (36%), Positives = 241/407 (59%), Gaps = 3/407 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           LF   A+K++VSW A++    +N   ++AL+   EM       + VT+ +VL A A    
Sbjct: 160 LFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRD 219

Query: 74  LRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
           +  G+ +H   +  G + +D+++ +AL DMY+KCG  + A  VFN +  R+ VS+  LI 
Sbjct: 220 VWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIA 279

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           GY Q +   E+L +F EM + G++ +  +   A++ACA L ++ QG+ +H    R  L  
Sbjct: 280 GYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGL 339

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
           +  +  +++D Y++ G +D A  +F+ LP KD   W  +I G  M G+  +++NLF  M 
Sbjct: 340 NSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMI 399

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLM 310
              V  + V+++ +L+AC+HGGLV++G + F  M  D  ++P   HY CMVDLLGRAG +
Sbjct: 400 RSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRL 459

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370
           E+A+K I+++P+EP   +WGAL   C I+   ELG     HL  L+P H G YILL+N+Y
Sbjct: 460 EEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLY 519

Query: 371 AEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKT 417
           +   KW+ A+ VR LMK +   K+PGCSW++    + +F+  D+  T
Sbjct: 520 SRCQKWEAAANVRRLMKGKGVDKSPGCSWIEVNGVIHEFIAFDKSHT 566



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 164/330 (49%), Gaps = 4/330 (1%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           LF  +A   I  WN ++  F+ +      L     +  H   P+  T   +L A ++   
Sbjct: 60  LFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVG 132
             P  + +A I++ GL+FD F+ N+L   +A CG ++ ++ +F   + +D VS+  LI G
Sbjct: 120 ENP-FQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING 178

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK-HLHT 191
             +     E+L  F EMR  G++ D V+ +  + A A L  +  G+ +HG  +    +  
Sbjct: 179 CLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIW 238

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            ++V ++++D Y++ G  D A K+F+ +P ++  SW  LI GY        A+ +F+ M 
Sbjct: 239 DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI 298

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
            +G+  +  +  + LTAC+  G +++G+   + +    +         +VD+  + G ++
Sbjct: 299 IEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVD 358

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           +A+ + + LP + D   W A++    + G+
Sbjct: 359 EALLVFEKLPAK-DVYPWTAMINGLAMRGD 387



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 129/236 (54%), Gaps = 3/236 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +F+ +  +N+VSW A++A + Q     +AL++ +EM I    PN  T
Sbjct: 249 MYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQST 308

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +T+ L ACA+   L  G+ +H  + R  L  +  L  AL DMY+KCGC++ A  VF  + 
Sbjct: 309 VTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLP 368

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D   +  +I G +   D   SL+LFS+M    ++ + V+F+G +SACA+   + +G E
Sbjct: 369 AKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLE 428

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILG 233
           +  + I  + L  ++     ++D   R+GR++ A K  + +P++ +   W  L  G
Sbjct: 429 LFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSG 484


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/419 (36%), Positives = 244/419 (58%), Gaps = 5/419 (1%)

Query: 1   MYAKSSRPAEASYLF--HNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           M +K     EA  +F  H I  +    WNAM++ + ++    KAL+L  +M  ++ + + 
Sbjct: 316 MNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDH 375

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD-LFLTNALTDMYAKCGCLNLAQNVFN 117
            T  +V  A A    L  GK++HAR I+ GL  + + ++NA+ + YAKCG L   + VFN
Sbjct: 376 YTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFN 435

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  RD +S+  L+  YSQ S+  +++ +FS MR  G+  +  +F   + +CANL  ++ 
Sbjct: 436 RMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEY 495

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+++HG+  +  L     + ++++D Y + G +  A K+F+ +   D+ SW  +I G+  
Sbjct: 496 GQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQ 555

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G VD A+ LF  M + GV  + V+++ +L ACSHGGLVE+G +YF  M+    + P   
Sbjct: 556 HGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEME 615

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYAC+VDLL R G + DA++ I  +PVEP+  +W  LLGACR++GNVELG  AA+ +   
Sbjct: 616 HYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSF 675

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           K ++   Y+LLSN Y E+G + +   +R +MK +  KK PGCSW+     +  F   D+
Sbjct: 676 KAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCSWISVNGTLHKFYAGDQ 734



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 172/347 (49%), Gaps = 5/347 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     ++  +F+ + E N+VSWNAM+  F  N L L A  L   M      P++ T
Sbjct: 215 MYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQT 274

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
              V  A      +   KE+    +  G++ +  +  AL DM +KCG L  A+++FN   
Sbjct: 275 FIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHF 334

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           I+ R    +N +I GY ++    ++L LF++M    +  D  ++    +A A L  +  G
Sbjct: 335 ITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLG 394

Query: 178 KEIHGVTIRKHLHT-HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           K++H   I+  L   ++ ++N++ + Y + G ++   K+F+ +  +D  SW +L+  Y  
Sbjct: 395 KKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQ 454

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
             E D AI +F  MR +G+  +  ++ ++L +C++  L+E G++    +    +   +  
Sbjct: 455 CSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCI 514

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            + +VD+  + G + DA K+   +    D   W A++     +G V+
Sbjct: 515 ESALVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAIIAGHAQHGIVD 560



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 164/342 (47%), Gaps = 13/342 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K S    A  LF  ++++N  SW  ++A  A+N L L   +   EM     FP+    
Sbjct: 115 YSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAY 174

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           + +L  C     +  G  +HA+I+ +G     F++ AL +MYAK   +  +  VFN ++ 
Sbjct: 175 SGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE 234

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
            + VS+N +I G++      ++  LF  M   G+  D  +F+G   A   L  + + KE+
Sbjct: 235 VNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEV 294

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC--LPVKDSASWNTLILGYGMLG 238
            G  +   + ++  V  +++D  ++ G +  A  IF+   +  + +A WN +I GY   G
Sbjct: 295 SGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSG 354

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP-TEMHY 297
             + A+ LF  M ++ +  D  +Y ++  A +    +  GKK    + A ++K   E++Y
Sbjct: 355 FNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKK----VHARAIKSGLEVNY 410

Query: 298 ACMVDLLGRA----GLMEDAVKLIKNLPVEPDANIWGALLGA 335
             + + +  A    G +ED  K+   +  + D   W +L+ A
Sbjct: 411 VSISNAVANAYAKCGSLEDVRKVFNRME-DRDLISWTSLVTA 451



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 140/312 (44%), Gaps = 38/312 (12%)

Query: 37  RLELKALQLVREM----------PIHNEF-------PNSVT------------LTNVLPA 67
           R ++  LQ++R++           I   F       PNSV             L ++L  
Sbjct: 18  RFKILVLQIIRQIRNSALTITHSAIQKPFATSGIKTPNSVKVDKTDSHLQIQPLVDLLRD 77

Query: 68  CARGHFLRPGKEIHARIIRKGLN--FDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEV 124
           C    FL+  K +H  +++   +    L L N +   Y+KC  ++ A  +F+ +S R+  
Sbjct: 78  CVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTF 137

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           S+ +LI G ++     +    F EM+  G+  D  ++ G +  C  L +I+ G  +H   
Sbjct: 138 SWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQI 197

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
           + +   +H FV+ ++L+ Y +   I+ + K+F+ +   +  SWN +I G+        A 
Sbjct: 198 VIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAF 257

Query: 245 NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK---YFDEMQADSVKPTEMHYACMV 301
           +LF  M  +GV  D  ++I +  A      V K K+   Y  E+  DS     +    ++
Sbjct: 258 DLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDS---NTLVGTALI 314

Query: 302 DLLGRAGLMEDA 313
           D+  + G +++A
Sbjct: 315 DMNSKCGSLQEA 326



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 3/168 (1%)

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTH--LFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
           C +   +KQ K +HG  ++     H  L + N +   Y++   ID A ++FD +  +++ 
Sbjct: 78  CVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTF 137

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           SW  LI G    G        F  M+  G+  D  +Y  IL  C     +E G     ++
Sbjct: 138 SWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQI 197

Query: 286 QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                         ++++  +   +ED+ K+  N   E +   W A++
Sbjct: 198 VIRGFTSHTFVSTALLNMYAKLQEIEDSYKVF-NTMTEVNVVSWNAMI 244


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/447 (33%), Positives = 245/447 (54%), Gaps = 33/447 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA   R  +A +LF  ++ +++V+WN M+  ++QN      L+L  EM      P+++ 
Sbjct: 160 MYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAII 219

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
           L  VL ACA    L  GK IH  I   G      +  +L +MYA CG ++LA+ V++   
Sbjct: 220 LCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLP 279

Query: 118 -----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                        +  +D V ++ +I GY+++    E+L LF+E
Sbjct: 280 SKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNE 339

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M+   +  D ++ +  ISACAN+ A+ Q K IH    +      L + N+++D Y + G 
Sbjct: 340 MQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGN 399

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +  A ++F+ +P K+  SW+++I  + M G+ D+AI LF  M+E  +  + V++I +L A
Sbjct: 400 LVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYA 459

Query: 269 CSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           CSH GLVE+G+K+F  M     + P   HY CMVDL  RA  +  A++LI+ +P  P+  
Sbjct: 460 CSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVI 519

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           IWG+L+ AC+ +G +ELG +AA  L  L+P H G  ++LSN+YA+  +WD+   VR+LMK
Sbjct: 520 IWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMK 579

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVNDR 414
            +   K   CS ++  +EV  F++ DR
Sbjct: 580 HKGVSKEKACSRIEVNNEVHVFMMADR 606



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 115/255 (45%), Gaps = 7/255 (2%)

Query: 74  LRPGKEIHARIIRKGLN-----FDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSY-N 127
           LR  K+IHA+I+R  ++         +    T        L+ A ++F+        + N
Sbjct: 25  LRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPNPPTRFSN 84

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR- 186
            L+  +S+      +LSL+  +R  G   D  SF   + A + L+A+  G EIHG+  + 
Sbjct: 85  QLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIHGLASKF 144

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
              H   F+ ++++  Y   GRI  A  +FD +  +D  +WN +I GY      D  + L
Sbjct: 145 GFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKL 204

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
           +E M+  G   D +    +L+AC+H G +  GK     ++ +  +        +V++   
Sbjct: 205 YEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYAN 264

Query: 307 AGLMEDAVKLIKNLP 321
            G M  A ++   LP
Sbjct: 265 CGAMHLAREVYDQLP 279


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 144/419 (34%), Positives = 253/419 (60%), Gaps = 11/419 (2%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM---PIHNE---FPNSVTLTNV 64
           A+ LF  +A+ N   +NAM+  +  N++ + A+ + ++M   P H E   FP+  T   V
Sbjct: 110 ANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNP-HGENPIFPDKFTFPFV 168

Query: 65  LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDE 123
           + +CA       GK++H  + + G   +  + N+L +MY KC  L+ A  VF  ++ RD 
Sbjct: 169 VKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDA 228

Query: 124 V--SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
              S+  ++ GY++    +++L  F  M+++G++ D +S +  +  CA L A++ GK IH
Sbjct: 229 TIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIH 288

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
               +     ++ V N++++ Y + G ID   ++FD +  +D  SW+T+I+G    G   
Sbjct: 289 IYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAR 348

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACM 300
            AI LF+ M++  +    ++++ +LTAC+H GL+ +G +YF+ M+ D +++P   HY C+
Sbjct: 349 EAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCL 408

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           V+LLG +G ++ A++L+K +P +PD+ IWG+LL +CR +GN+++   A EHL  L+P   
Sbjct: 409 VNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADT 468

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
           G Y+LLSN+YA+ GKWD  S++R+LM+S+  KK PGCS ++  + VQ+F   D  K F+
Sbjct: 469 GNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFS 527



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +   LF  + E++++SW+ M+   A +    +A++L +EM      P+ +T
Sbjct: 309 MYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIIT 368

Query: 61  LTNVLPACARGHFLRPG 77
              +L ACA    L  G
Sbjct: 369 FVGLLTACAHAGLLNEG 385


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 157/449 (34%), Positives = 250/449 (55%), Gaps = 37/449 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++     A  +   + E+  ++WNAM++ +  + L   AL L R+M +     +  T 
Sbjct: 233 YVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTY 292

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLN----FDLFLTNALTDMYAKCGCLNLAQNVF- 116
           T+V+ ACA G F   GK++HA I++  LN    F L + N L  +Y K G ++ A+ +F 
Sbjct: 293 TSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFY 352

Query: 117 NISFRDEVSYNILIVGY-------------------------------SQTSDCSESLSL 145
            +  +D +++N L+ GY                               +Q     ++L L
Sbjct: 353 EMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKL 412

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           F++M+L G + +  +F GAI+AC+ L A++ G+++H   +     + L V N+++  Y R
Sbjct: 413 FNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYAR 472

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
            G ++ A  +F  +P  D  SWN++I   G  G    AI L+E M ++G+  D  +++ +
Sbjct: 473 CGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTV 532

Query: 266 LTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           L+ACSH GLVE+G +YF+ M  +  + P E HYA M+DL  RAG   DA  +I ++P E 
Sbjct: 533 LSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEA 592

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
            A IW ALL  CR +GN++LG  AAE LF L PQH G Y+LLSNMYA  G+W++ ++ R+
Sbjct: 593 RAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRK 652

Query: 385 LMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           LM+ R  KK P CSW +  ++V  F+V+D
Sbjct: 653 LMRDRGVKKEPACSWTEVENKVHVFLVDD 681



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 177/386 (45%), Gaps = 57/386 (14%)

Query: 21  KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF-LRPGKE 79
           ++ V +NAM+  ++       A++L R M   N  P+  T  +VL A     +  R   +
Sbjct: 110 RDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQ 169

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGC---------LNLAQNVFN-ISFRDEVSYNIL 129
           +H  +++ G+     + NAL  +Y KC           +  A+ +F+ +  R+E  +  L
Sbjct: 170 MHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTL 229

Query: 130 IVGYSQTSDCS-------------------------------ESLSLFSEMRLLGMKHDV 158
           I GY +  D +                               ++L+LF +MRLLG++ D 
Sbjct: 230 ITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDE 289

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH----LFVANSILDFYTRSGRIDLANK 214
            ++   ISACA+      GK++H   ++  L+      L V N+++  Y + G++D A K
Sbjct: 290 STYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARK 349

Query: 215 IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL 274
           IF  +PVKD  +WNTL+ GY   G ++ A + F  M E  +    +++  +++  +  G 
Sbjct: 350 IFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNL----LTWTVMISGLAQNGF 405

Query: 275 VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IKNLPVEPDANIWGA 331
            E+  K F++M+ D  +P +  +A  +      G +E+  +L   I +L  +   ++  A
Sbjct: 406 GEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNA 465

Query: 332 LLGACRIYGNVELGAWAAEHLFMLKP 357
           ++      G VE    AA  +F+  P
Sbjct: 466 MITMYARCGIVE----AARTMFLTMP 487



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 144/346 (41%), Gaps = 56/346 (16%)

Query: 92  DLFLTNALTDMYAKCGCLNLAQNVFN---ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
           D+     L   Y+  G L +A+ +FN   +  RD V YN +I GYS  +D   ++ LF  
Sbjct: 78  DVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRA 137

Query: 149 MRLLGMKHDVVSFMGAISA----------CANL--AAIKQGKEIHGVTIRKHLHTHL--- 193
           MR    + D  +F   +SA          C  +    +K G EI    +   L  ++   
Sbjct: 138 MRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCA 197

Query: 194 --------------------------FVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
                                     F+  +++  Y R+G +  A +I D +  +   +W
Sbjct: 198 SSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAW 257

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           N +I GY   G  + A+ LF  MR  GV  D  +Y ++++AC+ GG    GK+    +  
Sbjct: 258 NAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILK 317

Query: 288 DSVKPTEMHYA----CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           + + P           ++ L  + G ++ A K+   +PV+ D   W  LL      G +E
Sbjct: 318 NELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVK-DIITWNTLLSGYVNAGRME 376

Query: 344 LGAWAAEHLFMLKPQH--CGYYILLSNMYAEAGKWDEASKVRELMK 387
                A+  F   P+     + +++S + A+ G  ++A K+   MK
Sbjct: 377 ----EAKSFFAQMPEKNLLTWTVMISGL-AQNGFGEQALKLFNQMK 417



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 2/132 (1%)

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
           NL++    + +HG  I         + N ++D Y +S     A K+FD +P  D  +  T
Sbjct: 25  NLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTT 84

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS 289
           LI  Y  LG +  A  +F     D    D V Y A++T  SH        + F  M+  +
Sbjct: 85  LITAYSALGNLKMAREIFNETPLD--MRDTVFYNAMITGYSHMNDGHSAIELFRAMRWAN 142

Query: 290 VKPTEMHYACMV 301
            +P +  +A ++
Sbjct: 143 FQPDDFTFASVL 154



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+      A  +F  +   + VSWN+M+A   Q+   +KA++L  +M      P+  T
Sbjct: 469 MYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRT 528

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
              VL AC+    +  G      ++   G+         + D++ + G  + A+NV +
Sbjct: 529 FLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVID 586


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 235/416 (56%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K  +  EA  LFHN    ++ SWNAM+  F  +    +AL+L   M    E  + +T
Sbjct: 443 VYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQIT 502

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             N   A      L+ GK+IHA +I+   ++DLF+ + + DMY KCG +  A+ VFN I 
Sbjct: 503 FANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIP 562

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D+V++  +I G  +  +  ++L  + +MRL G++ D  +F   + AC+ L A++QGK+
Sbjct: 563 SPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQ 622

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   ++ +     FV  S++D Y + G I+ A  +F  +  +  A WN +I+G    G 
Sbjct: 623 IHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGN 682

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A+N F  M+  GV  D V++I +L+ACSH GL     K FD MQ    V+P   HY+
Sbjct: 683 AEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYS 742

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VD L RAG +++A K++ ++P E  A ++  LL ACR+ G+ E G   AE LF + P 
Sbjct: 743 CLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPS 802

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y+LLSN+YA A +W+ A   R +MK    KK PG SW+  +++V  FV  DR
Sbjct: 803 DSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDR 858



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 180/345 (52%), Gaps = 3/345 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+     A  +F  + E +++SWN +++  A++ LE  +L+L  ++      P+  T
Sbjct: 341 MYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFT 400

Query: 61  LTNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           +T+VL AC+        G+++H   ++ G+  D F++ AL D+Y+K G +  A+ +F N 
Sbjct: 401 ITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQ 460

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              D  S+N ++ G++ + +  E+L LFS M   G K D ++F  A  A   L  ++QGK
Sbjct: 461 DGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGK 520

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH V I+   H  LFV + ILD Y + G +  A K+F+ +P  D  +W T+I G    G
Sbjct: 521 QIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENG 580

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
           E + A+  +  MR  GV  D  ++  ++ ACS    +E+GK+    +   +         
Sbjct: 581 EEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMT 640

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            +VD+  + G +EDA  L + +     A +W A++     +GN E
Sbjct: 641 SLVDMYAKCGNIEDAYGLFRRMNTRSVA-LWNAMIVGLAQHGNAE 684



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 166/343 (48%), Gaps = 15/343 (4%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVTLTNVLPA 67
           A A+ LF    + ++  WN  ++++ Q     +A+   R+M I +  P +S+T   +L  
Sbjct: 248 AYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDM-IKSRVPCDSLTYIVILSV 306

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSY 126
            A  + L  GK+IH  ++R G +  + + N+  +MY K G +N A+ +F  +   D +S+
Sbjct: 307 VASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISW 366

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA-AIKQGKEIHGVTI 185
           N +I G +++     SL LF ++   G+  D  +    + AC++L  +   G+++H   +
Sbjct: 367 NTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCAL 426

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
           +  +    FV+ +++D Y++ G+++ A  +F      D ASWN ++ G+ +      A+ 
Sbjct: 427 KAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALR 486

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV---- 301
           LF  M E G   D +++     A      +++GK    ++ A  +K    HY   V    
Sbjct: 487 LFSLMHERGEKADQITFANAAKAAGCLVRLQQGK----QIHAVVIK-MRFHYDLFVISGI 541

Query: 302 -DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            D+  + G M+ A K+   +P  PD   W  ++  C   G  E
Sbjct: 542 LDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGCVENGEEE 583



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 15/213 (7%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI---SFRDEVSYNILIVGY 133
           GK  HA I+  GLN D ++TN L  MYAKCG L  A+ +F+I   S RD V+YN ++  Y
Sbjct: 32  GKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAY 91

Query: 134 SQTSD------CSESLSLFSEMR---LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           + T +        E+  +F  +R   +L  +H +         C    +    + + G  
Sbjct: 92  AHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPL---FKLCLLYGSPSASEALQGYA 148

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
           ++  L   +FVA ++++ Y +  RI  A  +FD +PV+D   WN ++  Y  +G  D  +
Sbjct: 149 VKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVL 208

Query: 245 NLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            LF A    G+  D VS   IL       + E+
Sbjct: 209 GLFSAFHRSGLRPDCVSVRTILMGVGKKTVFER 241


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/420 (35%), Positives = 249/420 (59%), Gaps = 9/420 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKAL----QLVREMPIHNEFP 56
           MYAK +    A  +F  + E+N+VSWN+M+  F  N L  +A+     ++RE  +    P
Sbjct: 54  MYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTV---IP 110

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N V++++VL ACA    L  G+++H  +++ GL    ++ N+L DMY KC   +    +F
Sbjct: 111 NEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLF 170

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
             +  RD V++N+L++G+ Q     E+ + F  MR  G+  D  SF   + + A+LAA+ 
Sbjct: 171 QCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALH 230

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           QG  IH   I+     ++ +  S++  Y + G +  A ++F+ +   +  SW  +I  Y 
Sbjct: 231 QGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQ 290

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTE 294
           + G  +  I LFE M  +G+    V+++ +L+ACSH G VE+G  +F+ M+    + P  
Sbjct: 291 LHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGP 350

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYACMVDLLGRAG +++A + I+++P++P  ++WGALLGACR YGN+++G  AAE LF 
Sbjct: 351 EHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFE 410

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           ++P + G Y+LL+NM   +G+ +EA++VR LM     +K PGCSW+  ++    F  +DR
Sbjct: 411 MEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDR 470



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 175/348 (50%), Gaps = 11/348 (3%)

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
           +PN  T +++L A A    +  G+++H+ I + G + ++F+  AL DMYAKC  ++ A  
Sbjct: 7   YPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVR 66

Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLA 172
           VF+ +  R+ VS+N +IVG+   +    ++ +F + +R   +  + VS    +SACAN+ 
Sbjct: 67  VFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMG 126

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
            +  G+++HGV ++  L    +V NS++D Y +    D   K+F C+  +D  +WN L++
Sbjct: 127 GLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVM 186

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
           G+    + + A N F  MR +G+  D  S+  +L + +    + +G    D++       
Sbjct: 187 GFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVK 246

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI--WGALLGACRIYGNVELGAWAAE 350
                  ++ +  + G + DA ++ + +    D N+  W A++ A +++G         E
Sbjct: 247 NMCILGSLITMYAKCGSLVDAYQVFEGI---EDHNVISWTAMISAYQLHGCANQVIELFE 303

Query: 351 HLFM--LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPG 396
           H+    ++P H  +  +LS   +  G+ +E       MK +    NPG
Sbjct: 304 HMLSEGIEPSHVTFVCVLSAC-SHTGRVEEGLAHFNSMK-KIHDMNPG 349



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 93/186 (50%), Gaps = 2/186 (1%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           MR  G   +  +F   +SA A    +  G+++H +  +     ++FV  +++D Y +   
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF-EAMREDGVGYDPVSYIAILT 267
           +  A ++FD +P ++  SWN++I+G+      D A+ +F + +RE  V  + VS  ++L+
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           AC++ G +  G++    +    + P       ++D+  +    ++ VKL + +  + D  
Sbjct: 121 ACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVG-DRDVV 179

Query: 328 IWGALL 333
            W  L+
Sbjct: 180 TWNVLV 185


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 246/418 (58%), Gaps = 8/418 (1%)

Query: 2   YAKSSRPAEASYLFHN-IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y++     +A  +F   +  +++V+WN+M+A F  +  +  A +L  +M      P+  T
Sbjct: 248 YSQCGSLEDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYT 307

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMY--AKCGCLNLAQNVFN- 117
            T ++ AC+       GK +H  +I++GL   + + NA+  MY  +    +  A NVF+ 
Sbjct: 308 YTTIISACSHKD---NGKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHS 364

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  +D VS+N ++ G+SQT     +L LF  MR   +  D  +F   + +C++LA ++ G
Sbjct: 365 MESKDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLG 424

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           ++IH +T++    ++ FVA+S++  Y++ G I+ A K F+      S +WN+++  Y   
Sbjct: 425 QQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSITWNSIMFAYAQH 484

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G+ D A+ LF  MR+  V  D ++++A LTACSH GLVE+G+     M +D  + P   H
Sbjct: 485 GQGDVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEH 544

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YAC VDL GRAG +++A  LI+++P +PDA +W  LLGACR  G++EL A  A HL  L+
Sbjct: 545 YACAVDLFGRAGYLDEAKALIESMPFDPDAMVWKTLLGACRACGDIELAAQVASHLLELE 604

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P+    Y++LSNMY    +WDE + +  LM+ R+ KK PG SW++ ++EV  F+ +DR
Sbjct: 605 PEEHCTYVILSNMYGHLKRWDEKACMARLMRERKVKKVPGWSWIEVKNEVHAFIADDR 662



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 174/352 (49%), Gaps = 12/352 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R  +A  +F  I  +N VSWNA++A F        A  L+R M       +  T
Sbjct: 146 MYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRLDDGT 205

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--I 118
            + +L       F +   ++H +II+ G+ FD  + NA    Y++CG L  A+ VF+  +
Sbjct: 206 FSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERVFDGAV 265

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD V++N ++  +        +  LF +M+  G + D+ ++   ISAC++      GK
Sbjct: 266 GSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSHK---DNGK 322

Query: 179 EIHGVTIRKHLHTHLFVANSILDFY--TRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            +HG+ I++ L   + + N+++  Y  + S  ++ A  +F  +  KD  SWN+++ G+  
Sbjct: 323 SLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSILTGFSQ 382

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G  + A+ LF  MR   V  D  ++ A+L +CS    ++ G++          +  +  
Sbjct: 383 TGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGFESNDFV 442

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANI-WGALLGACRIY--GNVELG 345
            + ++ +  + G++EDA K  +      D++I W +++ A   +  G+V LG
Sbjct: 443 ASSLIFMYSKCGMIEDARKSFEK--TAKDSSITWNSIMFAYAQHGQGDVALG 492



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 127/264 (48%), Gaps = 15/264 (5%)

Query: 81  HARIIRKGLNFDLFLTNALTDMYAKC--GCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
           H + I+ G + D++ TN +   Y +C  G L  A N+F+ +S RD V++N +I GY  + 
Sbjct: 22  HCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSG 81

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
               +  L+  M+  G+  D  +F   +   A    +  G+++H + ++     H++  +
Sbjct: 82  SLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAGS 141

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
           ++LD Y +  R+  A  +F C+P ++S SWN LI G+ + G+ DTA  L   M E+GV  
Sbjct: 142 ALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRL 201

Query: 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQ------ADSVKPTEMHYACMVDLLGRAGLME 311
           D  ++  +LT      L+++ K Y   MQ         V+         +    + G +E
Sbjct: 202 DDGTFSPLLT------LLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLE 255

Query: 312 DAVKLIKNLPVEPDANIWGALLGA 335
           DA ++        D   W ++L A
Sbjct: 256 DAERVFDGAVGSRDLVTWNSMLAA 279



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 129/263 (49%), Gaps = 2/263 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  ++ ++ V+WN M++ +  +     A +L + M      P++ T  ++L   A 
Sbjct: 55  ACNLFDEMSHRDTVTWNTMISGYVNSGSLGSAWELYKSMKSFGLMPDAYTFGSILKGVAC 114

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              L  G+++H+ I++ G    ++  +AL DMYAKC  +  A  VF  I  R+ VS+N L
Sbjct: 115 ACRLDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNAL 174

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I G+    D   +  L   M   G++ D  +F   ++        K   ++H   I+  +
Sbjct: 175 IAGFVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGV 234

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFD-CLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
                V N+ +  Y++ G ++ A ++FD  +  +D  +WN+++  +      +TA  LF 
Sbjct: 235 QFDNTVCNATITSYSQCGSLEDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFL 294

Query: 249 AMREDGVGYDPVSYIAILTACSH 271
            M++ G   D  +Y  I++ACSH
Sbjct: 295 DMQQFGFEPDIYTYTTIISACSH 317


>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/417 (35%), Positives = 244/417 (58%), Gaps = 5/417 (1%)

Query: 2   YAKSSRPAEASYLFHNIAE-KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y+K     +A  +F + A  +++V+WN+++A +     E  A +L+ +M  H   P+  +
Sbjct: 245 YSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYS 304

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC--GCLNLAQNVF-N 117
            T+++ AC   +    G+ +H  +I++G    + ++NAL  MY K   G +  A  +F +
Sbjct: 305 YTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFES 364

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           + F+D VS+N ++ G SQT    +++  F  MR   M  D  SF   + +C++LA  + G
Sbjct: 365 LEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLG 424

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           ++IH + ++  L ++ FV++S++  Y++ G I+ A + F+      S +WN L+ GY   
Sbjct: 425 QQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQH 484

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G+ + A++LF  M E  V  D ++++A+LTACSH GLVE+G K+   M++D  V P   H
Sbjct: 485 GQCNVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEH 544

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YAC VDL GR+G +E+A  LI+ +P +PD  +W   LGACR  GN+EL    A HL  ++
Sbjct: 545 YACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEME 604

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P+    Y+LLSNMY    +WDE +KV+ LMK R  KK PG SW++  + V  F+  D
Sbjct: 605 PEEHCTYVLLSNMYGNLMRWDEKAKVKRLMKERGVKKVPGWSWIEVNNNVHAFIAQD 661



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 169/347 (48%), Gaps = 9/347 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  +  +A   F +I++ N VSWNAM+  +AQ      A  L+  M    E  +  T
Sbjct: 143 MYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGT 202

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS- 119
              +LP      F     ++H +II+ GL     + NAL   Y+KCG L+ A+ +F+ S 
Sbjct: 203 YAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSA 262

Query: 120 -FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD V++N L+  Y   S    +  L  +M+  G + D+ S+   ISAC N      G+
Sbjct: 263 GIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGR 322

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRS--GRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            +HG+ I++     + ++N+++  Y +S  G +  A  IF+ L  KD  SWN+++ G   
Sbjct: 323 SLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQ 382

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G  + A+  F  MR   +  D  S+ A+L +CS     + G++         ++  E  
Sbjct: 383 TGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFV 442

Query: 297 YACMVDLLGRAGLMEDAVKLI----KNLPVEPDANIWG-ALLGACRI 338
            + ++ +  + G++EDA +      KN  +  +A ++G A  G C +
Sbjct: 443 SSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNV 489



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 193/445 (43%), Gaps = 60/445 (13%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A  LF  +  ++ VSWN M+A          +  ++R M       +  T 
Sbjct: 43  YWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGFELDRYTF 102

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            ++L   A       G+++H+ II+ G   +++  +AL DMYAKC  L  A   F +IS 
Sbjct: 103 GSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSISK 162

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
            + VS+N +I GY+Q  D   +  L   M   G K D  ++   +    +        ++
Sbjct: 163 HNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQL 222

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLILGYGMLGE 239
           HG  I+  L     + N+++  Y++ G +D A +IFD    ++D  +WN+L+  Y +  +
Sbjct: 223 HGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQ 282

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG---------- 278
            D A  L   M+E G   D  SY +I++AC            HG ++++G          
Sbjct: 283 EDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNA 342

Query: 279 ------KKYFDEMQA-----DSVK-PTEMHYACMVDLLGRAGLMEDAVKL---IKNLPVE 323
                 K  +  M+      +S++    + +  ++  L + G  EDAVK    +++  ++
Sbjct: 343 LISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMD 402

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN---------MYAEAG 374
            D   + A+L +C      +LG     H+  LK      Y L SN         MY++ G
Sbjct: 403 IDHYSFSAVLRSCSDLATFQLGQQI--HVLALK------YGLESNEFVSSSLIFMYSKCG 454

Query: 375 KWDEASKVRELMKSREAKKNPGCSW 399
             ++A +  E     EA KN   +W
Sbjct: 455 IIEDARRSFE-----EASKNSSITW 474



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 119/267 (44%), Gaps = 23/267 (8%)

Query: 81  HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDC 139
           H+  ++ G   D++  N + + Y KC  L  A  +F+ +  RD VS+N +I G+    + 
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
             S  +   MR  G + D  +F   +   A       G+++H + I+     +++  +++
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSAL 140

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
           LD Y +  +++ A   F  +   ++ SWN +I GY   G+ +TA  L + M ++G   D 
Sbjct: 141 LDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDD 200

Query: 260 VSYIAI-----------LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            +Y  +           LT+  HG +++ G +  + M              ++    + G
Sbjct: 201 GTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTM-----------CNALITSYSKCG 249

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGA 335
            ++DA ++  +     D   W +LL A
Sbjct: 250 SLDDAKRIFDSSAGIRDLVTWNSLLAA 276


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 146/416 (35%), Positives = 252/416 (60%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K          F  + EK+++SW  ++A +AQN   L AL L+R++ +     + + 
Sbjct: 396 MYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMM 455

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + ++L AC+     +  KEIH  +++ GL  D+ + NA+ ++Y +   ++ A++VF +I+
Sbjct: 456 IGSILLACSGLKSEKLIKEIHGYVLKGGLA-DILIQNAIVNVYGELALVDYARHVFESIN 514

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+  +I          E+L LF+ +    ++ D+++ +  + A A L+++K+GKE
Sbjct: 515 SKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKE 574

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  IRK       +ANS++D Y R G ++ A  IF+ +  +D   W ++I   GM G 
Sbjct: 575 IHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGC 634

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AI+LF  M ++ V  D ++++A+L ACSH GLV +GK++F+ M+ +  ++P   HYA
Sbjct: 635 GKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYA 694

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLL R+  +E+A   ++N+P+EP A +W ALLGACRI+ N +LG  AA+ L  L  +
Sbjct: 695 CLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTE 754

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G Y+L+SN +A  G+W++  +VR +MK  + KK PGCSW++  +++  F+  D+
Sbjct: 755 NSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDK 810



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 172/342 (50%), Gaps = 12/342 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  ++E+ I +WNAM+         ++A++L +EM +     ++ T
Sbjct: 91  MYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFT 150

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
              VL AC      R G EIH   ++ G    +F+ NAL  MYAKCG L  A+ +F+   
Sbjct: 151 FPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGL 210

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +   D VS+N +I  +    +  E+LSLF  M+ +G++ +  +F+ A+ AC     IK G
Sbjct: 211 MEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIG 270

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + IH V ++ +  T ++V+N+++  Y   G+++ A ++F  +  KD  SWNTL+ G    
Sbjct: 271 RGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQN 330

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK---PTE 294
                AIN F+ M++ G   D VS + ++ A      +  G     E+ A ++K    + 
Sbjct: 331 DMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGM----EVHAYAIKHGIDSN 386

Query: 295 MHYA-CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           MH    ++D+ G+   ++      + +P E D   W  ++  
Sbjct: 387 MHIGNSLIDMYGKCCCVKYMGSAFEYMP-EKDLISWTTIIAG 427



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 205/437 (46%), Gaps = 57/437 (13%)

Query: 1   MYAKSSRPAEASYLFHN--IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MYAK      A  LF +  + + + VSWN++++        L+AL L R M       N+
Sbjct: 192 MYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNT 251

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
            T  + L AC    F++ G+ IHA I++     D++++NAL  MYA CG +  A+ VF +
Sbjct: 252 YTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKS 311

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           + F+D VS+N L+ G  Q    S++++ F +M+  G K D VS +  I+A    A +  G
Sbjct: 312 MLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAG 371

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            E+H   I+  + +++ + NS++D Y +   +      F+ +P KD  SW T+I GY   
Sbjct: 372 MEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQN 431

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HG-------------- 272
                A+NL   ++ + +  DP+   +IL ACS           HG              
Sbjct: 432 ECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLADILIQN 491

Query: 273 ---------GLVEKGKKYFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-- 320
                     LV+  +  F+ + + D V  T M   C+       GL  +A++L  +L  
Sbjct: 492 AIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCV-----HNGLAIEALELFNSLIE 546

Query: 321 -PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI--LLSN----MYAEA 373
             +EPD     ++L A     +++ G     H F+++    G+++  L++N    MYA  
Sbjct: 547 TNIEPDLITLVSVLYAAAALSSLKKG--KEIHGFLIRK---GFFLEGLIANSLVDMYARC 601

Query: 374 GKWDEASKVRELMKSRE 390
           G  + A  +   +K R+
Sbjct: 602 GTMENARNIFNYVKQRD 618



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 147/320 (45%), Gaps = 13/320 (4%)

Query: 27  NAMVANFAQNRLELK-ALQ-----LVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80
           N  +  F+   + LK A Q         +P    FP     +  L  CA    L  G+++
Sbjct: 9   NHTLPTFSHRPISLKEAFQSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQL 68

Query: 81  HARIIRKGLNFD-LFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSD 138
           HA  ++     D +FL      MY KCG    A  VF+ +S R   ++N +I        
Sbjct: 69  HAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGR 128

Query: 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
             E++ L+ EMR+LG+  D  +F   + AC      + G EIHGV ++      +FV N+
Sbjct: 129 YVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNA 188

Query: 199 ILDFYTRSGRIDLANKIFDC--LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           ++  Y + G +  A  +FD   +   D  SWN++I  +   GE   A++LF  M+E GV 
Sbjct: 189 LIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVE 248

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-CMVDLLGRAGLMEDAVK 315
            +  ++++ L AC     ++ G+     +   S   T+++ +  ++ +    G MEDA +
Sbjct: 249 SNTYTFVSALQACEGPTFIKIGRG-IHAVILKSNHFTDVYVSNALIAMYANCGQMEDAER 307

Query: 316 LIKNLPVEPDANIWGALLGA 335
           + K++  + D   W  LL  
Sbjct: 308 VFKSMLFK-DCVSWNTLLSG 326


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/423 (37%), Positives = 241/423 (56%), Gaps = 16/423 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEK----NIVSWNAMVANFAQNRLELKALQLVREM--PIHNEF 55
           YA      EA  LF ++ E+    N++ WN +      +     ALQL+ +M   IH   
Sbjct: 258 YASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIH--- 314

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF--LTNALTDMYAKCGCLNLAQ 113
            +++ +   L AC+    ++ GKEIH   +R    FD+F  + NAL  MY++C  L  A 
Sbjct: 315 LDAIAMVVGLNACSHIGAIKLGKEIHGHAVRTC--FDVFDNVKNALITMYSRCRDLGHAF 372

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
            +F+    +  +++N ++ GY+      E   LF EM   GM+ + V+    +  CA +A
Sbjct: 373 ILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIA 432

Query: 173 AIKQGKEIHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
            ++ GKE H   ++ K    +L + N+++D Y+RSGR+  A K+FD L  +D  ++ ++I
Sbjct: 433 NLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMI 492

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSV 290
           LGYGM GE +T + LFE M +  +  D V+ +A+LTACSH GLV +G+  F  M     +
Sbjct: 493 LGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQVLFKRMIDVHGI 552

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
            P   HYACM DL GRAGL+  A + I  +P +P + +W  LLGACRI+GN E+G WAA 
Sbjct: 553 VPRLEHYACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLLGACRIHGNTEMGEWAAG 612

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
            L  +KP H GYY+L++NMYA AG W + ++VR  M++   +K PGC+WV    E   F+
Sbjct: 613 KLLEMKPDHSGYYVLIANMYAAAGSWRKLAEVRTYMRNLGVRKAPGCAWVDVGSEFSPFL 672

Query: 411 VND 413
           V D
Sbjct: 673 VGD 675



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/271 (32%), Positives = 139/271 (51%), Gaps = 21/271 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++      A  LFH   EK +++WNAM++ +A      +   L REM      PN VT
Sbjct: 361 MYSRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVT 420

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           + +VLP CAR   L+ GKE H  I++ K     L L NAL DMY++ G +  A+ VF+ +
Sbjct: 421 IASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSL 480

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + RDEV+Y  +I+GY    +   +L LF EM  L +K D V+ +  ++AC++   + QG+
Sbjct: 481 TKRDEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQ 540

Query: 179 -------EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTL 230
                  ++HG+  R   +        + D + R+G ++ A +    +P K  SA W TL
Sbjct: 541 VLFKRMIDVHGIVPRLEHYA------CMADLFGRAGLLNKAKEFITGMPYKPTSAMWATL 594

Query: 231 ILGYGMLGEVD----TAINLFEAMREDGVGY 257
           +    + G  +     A  L E M+ D  GY
Sbjct: 595 LGACRIHGNTEMGEWAAGKLLE-MKPDHSGY 624



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 159/345 (46%), Gaps = 36/345 (10%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           WN +++ + +N   ++AL + + M      P+  T  +VL AC        G E+H  I 
Sbjct: 150 WNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIE 209

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLS 144
              + + LF+ NAL  MY + G L +A+++F N+  RD VS+N +I  Y+      E+  
Sbjct: 210 ASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEAFQ 269

Query: 145 LFSEMRLLGMKHDVV-------------SFMGA---------------------ISACAN 170
           LF  M+  G++ +V+             +F GA                     ++AC++
Sbjct: 270 LFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAMVVGLNACSH 329

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           + AIK GKEIHG  +R        V N+++  Y+R   +  A  +F     K   +WN +
Sbjct: 330 IGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKGLITWNAM 389

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE-MQADS 289
           + GY  +   +    LF  M ++G+  + V+  ++L  C+    ++ GK++    M+   
Sbjct: 390 LSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQ 449

Query: 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
            +   + +  +VD+  R+G + +A K+  +L    +      +LG
Sbjct: 450 FEEYLLLWNALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILG 494



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 1/229 (0%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS- 119
           + ++L AC     L  GK++HA++I  GL+ +  L + L + Y     L  AQ V   S 
Sbjct: 84  IGSLLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSN 143

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D + +N+LI  Y +     E+L ++  M    ++ D  ++   + AC        G E
Sbjct: 144 TLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLE 203

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H       +   LFV N+++  Y R G++++A  +FD +P +DS SWNT+I  Y   G 
Sbjct: 204 VHRSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGI 263

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
              A  LF +M+E+GV  + + +  I   C H G      +   +M+  
Sbjct: 264 WKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTS 312



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 1/167 (0%)

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
           AC +  ++ QGK++H   I   L  +  + + +++FYT    +  A  + +     D   
Sbjct: 90  ACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTLDPLH 149

Query: 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
           WN LI  Y   G    A+ +++ M    +  D  +Y ++L AC        G +    ++
Sbjct: 150 WNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIE 209

Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           A S++ +   +  +V + GR G +E A  L  N+P   D+  W  ++
Sbjct: 210 ASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMP-RRDSVSWNTII 255


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/418 (35%), Positives = 249/418 (59%), Gaps = 6/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS-- 58
           M+ K     +A  LF  +  +N VSW  +++ +  +   ++A +L   + +  EF +   
Sbjct: 176 MHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLF--ILMREEFYDCGP 233

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T   ++ A A    + PG+++H+  I+ GL  D+F++ AL DMY+KCG L  A  VF+ 
Sbjct: 234 RTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDE 293

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  +  V +N +I GY+      E+L L+ EMR  G+K D  +F   I  C+ LA++ + 
Sbjct: 294 MPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARA 353

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K++H   +R      +    +++DFY++ G++D A  +FD +  ++  SWN LI GYG  
Sbjct: 354 KQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNH 413

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G  + AI++FE M  +G+  + V+++A+L+ACS  GL E+G + F  M  D  VKP  MH
Sbjct: 414 GHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMH 473

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           +ACM++LLGR GL+++A  LI+  P +P AN+W ALL ACR++GN+ELG +AAE L+ ++
Sbjct: 474 FACMIELLGREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGME 533

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P+    YI+L N+Y  +GK  EA+ V + +K +  +  P CSW++  ++   F+  D+
Sbjct: 534 PEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDK 591



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 150/317 (47%), Gaps = 16/317 (5%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   ++ AC     +R  K +   ++  G   D ++ N +  M+ KCG +  A  +F+ +
Sbjct: 134 TYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEM 193

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ VS+  +I GY  + +  E+  LF  MR         +F   I A A L  I  G+
Sbjct: 194 PARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASAGLEIIFPGR 253

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++H   I+  L   +FV+ +++D Y++ G ++ A+ +FD +P K    WN++I GY + G
Sbjct: 254 QLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHG 313

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             + A++L+  MR+ GV  D  ++  I+  CS    V + K+    +  +      +   
Sbjct: 314 YSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANT 373

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANI--WGALLGACRIYGNVELGAWAAEHLF--M 354
            +VD   + G ++DA  +   +      NI  W AL+     YGN   G  A + +F  M
Sbjct: 374 ALVDFYSKWGKVDDARHVFDRMSCR---NIISWNALIAG---YGNHGHGEEAID-MFEKM 426

Query: 355 LK----PQHCGYYILLS 367
           L+    P H  +  +LS
Sbjct: 427 LREGMMPNHVTFLAVLS 443


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/411 (36%), Positives = 242/411 (58%), Gaps = 2/411 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  LF  + E+N+VSWN+M+  + QN    +A+ + ++M      P  V+
Sbjct: 280 MYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVS 339

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +   L ACA    L  G+ IH   +   L+ ++ + N+L  MY KC  ++ A ++F  + 
Sbjct: 340 VMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQ 399

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS+N +I+G++Q     E+L+ FS+M+   +K D  +++  I+A A L+     K 
Sbjct: 400 SRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKW 459

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHGV +R  L  ++FV  +++D Y + G I +A  IFD +  +   +WN +I GYG  G 
Sbjct: 460 IHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGI 519

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LFE M++  +  + V+++++++ACSH GLVE G K F  M+ + S++P+  HY 
Sbjct: 520 GKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYG 579

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            MVDLLGRAG + +A   I  +PV+P  N++GA+LGAC+I+ NV      AE LF L P+
Sbjct: 580 AMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPE 639

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
             GY++LL+N+Y  A  W++  +VR  M  +  +K PGCS V+ ++EV  F
Sbjct: 640 DGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSF 690



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 187/351 (53%), Gaps = 5/351 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  +  EA  +F  + E+++VSWN +VA ++QN +   AL++V  M   N  P+ +T
Sbjct: 179 MYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFIT 238

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VLPA +    +R GKEIH   +R G +  + +  AL DMYAKCG L  A+ +F+ + 
Sbjct: 239 IVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGML 298

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+N +I  Y Q  +  E++ +F +M   G+K   VS MGA+ ACA+L  +++G+ 
Sbjct: 299 ERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRF 358

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH +++   L  ++ V NS++  Y +   +D A  +F  L  +   SWN +ILG+   G 
Sbjct: 359 IHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGR 418

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+N F  M+   V  D  +Y++++TA +   +    K     +  + +         
Sbjct: 419 PIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTA 478

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
           +VD+  + G +  A +LI ++  E     W A++     YG   +G  A E
Sbjct: 479 LVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDG---YGTHGIGKAALE 525



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 143/280 (51%), Gaps = 1/280 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           ++ +     EA+ +F  I +K  V +  M+  FA+     KAL+    M      P    
Sbjct: 78  LFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYN 137

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T +L  C     LR GKEIH  +++ G + DLF    L +MYAKC  ++ A+ VF+ + 
Sbjct: 138 FTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMP 197

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N ++ GYSQ      +L + + M    +K   ++ +  + A + L  I+ GKE
Sbjct: 198 ERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKE 257

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R    + + +A +++D Y + G +  A  +FD +  ++  SWN++I  Y     
Sbjct: 258 IHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNEN 317

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
              A+ +F+ M ++GV    VS +  L AC+  G +E+G+
Sbjct: 318 PKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 135/297 (45%), Gaps = 12/297 (4%)

Query: 50  PIHNEFPNSVTLTNVLPACARGH----------FLRPGKEIHARIIRKGLNFDLFLTNAL 99
           PI +   + ++  N +PA    H           L+  + I   I + GL  +      L
Sbjct: 16  PISSSHRHFLSQRNYIPANVYEHPAALLLERCSSLKELRHILPLIFKNGLYQEHLFQTKL 75

Query: 100 TDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
             ++ + G ++ A  VF  I  +  V Y  ++ G+++ SD  ++L  F  MR   ++  V
Sbjct: 76  VSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVV 135

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
            +F   +  C + A ++ GKEIHG+ ++      LF    + + Y +  ++  A K+FD 
Sbjct: 136 YNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDR 195

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P +D  SWNT++ GY   G    A+ +   M E+ +    ++ +++L A S   L+  G
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIG 255

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           K+                   +VD+  + G ++ A +L+ +  +E +   W +++ A
Sbjct: 256 KEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTA-RLLFDGMLERNVVSWNSMIDA 311


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 150/407 (36%), Positives = 244/407 (59%), Gaps = 3/407 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP-IHNEFPNSVTLTNVLPACA 69
           A  +F     +++V+WN M+       L  KA  L+ EM  + N  P+ VT+ +++PACA
Sbjct: 165 ACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACA 224

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
           +   L  GK +H+     GL+ +L + NA+ DMY KC  +  AQ VFN I  +D +S+  
Sbjct: 225 QLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTS 284

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           ++ G +++    E+L+LF +M+L  ++ D ++ +G +SACA   A+ QGK IH +  +  
Sbjct: 285 MLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFE 344

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           ++  L +  +++D Y + G IDLA ++F  + V++  +WN LI G  M G  + AI+LF+
Sbjct: 345 INCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFD 404

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            M  D +  D V++IA+L ACSH GLV++G   F  M+    ++P   HY C+VDLL RA
Sbjct: 405 QMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRA 464

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
             ++DA+  I+N+P++ ++ +W  LLGACR  G+ +L       +  L+P  CG Y++LS
Sbjct: 465 RKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLS 524

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           N+YA   +WD A K+R+ MK++  +K PGCSW++    +  FV  DR
Sbjct: 525 NLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDR 571



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 170/335 (50%), Gaps = 3/335 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  +   +    N M+  +A+++   +A+ L   M       ++ T   VL ACAR
Sbjct: 64  ARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACAR 123

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNIL 129
              ++ G+  H  +++ G   DLF+ NAL   Y  CG    A +VF+ S  RD V++NI+
Sbjct: 124 LGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIM 183

Query: 130 IVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           I  +       ++  L  EM +L  ++ D V+ +  + ACA L  +++GK +H  +    
Sbjct: 184 INAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELG 243

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L  +L V N+ILD Y +   I+ A ++F+ +  KD  SW +++ G    G    A+ LF+
Sbjct: 244 LDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQ 303

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            M+ + +  D ++ + +L+AC+  G +++GK     +    +    +    +VD+  + G
Sbjct: 304 KMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCG 363

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            ++ A+++ + + V  +   W AL+G   ++G+ E
Sbjct: 364 SIDLALQVFRRMRVR-NVFTWNALIGGLAMHGHGE 397



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 127/246 (51%), Gaps = 3/246 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F+ I EK+++SW +M++  A++    +AL L ++M ++    + +T
Sbjct: 257 MYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEIT 316

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L  VL ACA+   L  GK IH  I +  +N DL L  AL DMYAKCG ++LA  VF  + 
Sbjct: 317 LVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMR 376

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+  ++N LI G +      +++SLF +M    +  D V+F+  + AC++   + +G  
Sbjct: 377 VRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLA 436

Query: 180 IHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGML 237
           +      K  +   +     ++D   R+ ++D A    + +P+K +S  W TL+      
Sbjct: 437 MFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSG 496

Query: 238 GEVDTA 243
           G  D A
Sbjct: 497 GHFDLA 502



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 164/353 (46%), Gaps = 43/353 (12%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYA--KCGCLNLAQNVF-NISFRDEVSYNILIVGYS 134
           K+ HA ++R  L  +   ++ L    A    G LN A+ +F  +   D    N +I GY+
Sbjct: 28  KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
           ++ +  E++SL+  M   G+  D  ++   ++ACA L A+K G+  H   ++    + LF
Sbjct: 88  RSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLF 147

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE-D 253
           V N+++ FY   G    A  +FD   V+D  +WN +I  +   G  + A +L + M + D
Sbjct: 148 VINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLD 207

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGK---KYFDEM-----------------QADSVKPT 293
            +  D V+ ++++ AC+  G +E+GK    Y  E+                 + D ++  
Sbjct: 208 NLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESA 267

Query: 294 E-----------MHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIY 339
           +           + +  M+  L ++G  ++A+ L + +    +E D      +L AC   
Sbjct: 268 QEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQT 327

Query: 340 GNVELGAWAAEHLFMLKPQ-HCGYYI--LLSNMYAEAGKWDEASKVRELMKSR 389
           G ++ G +   HL + K + +C   +   L +MYA+ G  D A +V   M+ R
Sbjct: 328 GALDQGKYI--HLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR 378



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 37/213 (17%)

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFY--TRSGRIDLANKIFDCLPVKDSASWNT 229
            +I + K+ H + +R HL  +   ++ ++ F   + SG ++ A K+F  +   D    NT
Sbjct: 22  TSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNT 81

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS 289
           +I GY        A++L+  M E GV  D  +Y  +L AC+  G V+ G+++  E+  + 
Sbjct: 82  MIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNG 141

Query: 290 VKPTEM-------------HYACMVDLLGRA------------------GLMEDAVKLIK 318
                               + C  D+   +                  GL E A  L+ 
Sbjct: 142 FGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLD 201

Query: 319 NLP----VEPDANIWGALLGACRIYGNVELGAW 347
            +     + PD     +L+ AC   GN+E G +
Sbjct: 202 EMTKLDNLRPDEVTMVSLVPACAQLGNLERGKF 234


>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
 gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 153/424 (36%), Positives = 245/424 (57%), Gaps = 12/424 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y KS    EA  LF  I ++++V WN+MV  +AQ     +AL + REM       +  T+
Sbjct: 105 YLKSELMKEARELFDEIPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTV 164

Query: 62  TNVLPACA-RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + VL   A RG F   G+ +H  +I+ G +  + + NAL DMY KC C+  A  +F  ++
Sbjct: 165 SGVLSVFAGRGDF-DNGRLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMN 223

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D  S+N ++      SD   +L LF  M   G++ D+V+    + AC++LAA+  G+E
Sbjct: 224 EKDIFSWNSILSANELCSDHDGTLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGRE 283

Query: 180 IHGVTIRKHL--------HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
           IHG  I              +L   N+++D Y + G +  A  +F  +  +D+ASWN +I
Sbjct: 284 IHGYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIMI 343

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSV 290
           +GYGM G  + A+ +F  M + G+  + ++++ +L ACSH G + +G K+  EM+    V
Sbjct: 344 MGYGMHGYGNEALYMFSDMCKSGLKPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGV 403

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
            PT  HY C++D+LGRAG +E+A KL   +P++ +  +W ALL AC++YGNV+L   AA+
Sbjct: 404 VPTIQHYTCVIDMLGRAGQLEEAYKLAVTMPIQTNPVVWRALLAACQLYGNVDLAEVAAQ 463

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
            +F L P HCG Y+L+SN Y  AG++ E   +R  M+ ++ KK PGCSW++ ++ +  F+
Sbjct: 464 KVFELNPAHCGNYVLMSNAYVAAGRYQEVLDIRHTMRQQDVKKTPGCSWIELKNGMNTFI 523

Query: 411 VNDR 414
             DR
Sbjct: 524 NGDR 527



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 168/366 (45%), Gaps = 18/366 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MYAK ++  +A  + +  A+  +N+ ++NA+++ F  N L    L    EM      P+ 
Sbjct: 1   MYAKCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDK 60

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T   ++        +   K+IH  + + GL+ D+++ ++L   Y K   +  A+ +F+ 
Sbjct: 61  YTFPCLIKGLCEVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDE 120

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           I  RD V +N ++ GY+Q     E+L +  EM   G+     +  G +S  A       G
Sbjct: 121 IPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNG 180

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + +HG  I+    + + V N+++D Y +   +  A +IF+ +  KD  SWN+++    + 
Sbjct: 181 RLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELC 240

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMH 296
            + D  + LF+ M  DGV  D V+   IL ACSH   +  G++    M  +  VK  E  
Sbjct: 241 SDHDGTLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHGYMIVNGFVKDGESE 300

Query: 297 -------YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAA 349
                     ++D+  + G M DA  +  N+    D   W  ++    ++G      +  
Sbjct: 301 NMYNLQTINALMDMYAKCGSMRDAGMVFYNMS-NRDTASWNIMIMGYGMHG------YGN 353

Query: 350 EHLFML 355
           E L+M 
Sbjct: 354 EALYMF 359



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 1/113 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F+N++ ++  SWN M+  +  +    +AL +  +M      PN +T
Sbjct: 314 MYAKCGSMRDAGMVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGLKPNEIT 373

Query: 61  LTNVLPACARGHFLRPGKEIHARI-IRKGLNFDLFLTNALTDMYAKCGCLNLA 112
              VL AC+   F+  G +    + ++ G+   +     + DM  + G L  A
Sbjct: 374 FVGVLLACSHAGFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEA 426


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 232/416 (55%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +      LF  ++ +++VSW  ++    Q   E  A+Q    M   +  PN  T
Sbjct: 261 MYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYT 320

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V+  CA    +  G+++HA I+  GL   L + N++  MYAKCG L  +  +F+ ++
Sbjct: 321 FAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMT 380

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS++ +I GY Q    SE+  L S MR+ G K    +    +SAC N+A ++ GK+
Sbjct: 381 RRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQ 440

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +   L     V +++++ Y + G I+ A++IFD     D  SW  +I GY   G 
Sbjct: 441 LHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGY 500

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
               I+LFE +   G+  D V++I +L+ACSH GLV+ G  YF+ M     + P++ HY 
Sbjct: 501 SREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYG 560

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLL RAG + DA  +I+ +P   D  +W  LL ACR++G+VE G   AE +  L+P 
Sbjct: 561 CMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPN 620

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G +I L+N+YA  GKW EA+ +R+LMKS+   K PG SW++ +D V  FV  DR
Sbjct: 621 CAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGDR 676



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 195/426 (45%), Gaps = 43/426 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+ +  E   +FH +  +N+VSW A++    +     +AL    EM       +S T
Sbjct: 160 MYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYT 219

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
               L ACA    L  G+EIHA+ ++KG +   F+ N L  MY KCG L     +F  +S
Sbjct: 220 FAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMS 279

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  +I    Q      ++  F  MR   +  +  +F   IS CANLA I+ G++
Sbjct: 280 MRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQ 339

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + +   L   L V NSI+  Y + G++  ++ IF  +  +D  SW+T+I GY   G 
Sbjct: 340 LHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGH 399

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           V  A  L   MR +G      +  ++L+AC +  ++E GK+    + +  ++ T M  + 
Sbjct: 400 VSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSA 459

Query: 300 MVDLLGRAGLMEDA-------------------------------VKLIKNLP---VEPD 325
           ++++  + G +E+A                               + L + +P   + PD
Sbjct: 460 LINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPD 519

Query: 326 ANIWGALLGACRIYGNVELG-----AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
           +  +  +L AC   G V+LG     A + ++      +H G  I   ++   AG+  +A 
Sbjct: 520 SVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMI---DLLCRAGRLSDAE 576

Query: 381 KVRELM 386
            + E M
Sbjct: 577 HMIEAM 582



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 193/416 (46%), Gaps = 37/416 (8%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVTLT 62
           K+     A  +F  +++K+ +SW  +++ +       +AL L + M + +    +   L+
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
               AC     +  G+ +H   ++ GL   +F+ +AL DMY K G +   + VF+ +  R
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + VS+  +I G  +     E+L  FSEM    +++D  +F  A+ ACA+  A+  G+EIH
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
              ++K      FVAN++   Y + G+++    +F+ + ++D  SW T+I     +G+ +
Sbjct: 241 AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEE 300

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF------------------- 282
            A+  F  MRE  V  +  ++ A+++ C++   +E G++                     
Sbjct: 301 CAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIM 360

Query: 283 ------DEMQADSVKPTEM------HYACMVDLLGRAGLMEDAVKLIKNLPVE---PDAN 327
                  ++ + SV   EM       ++ ++    + G + +A +L+  + +E   P   
Sbjct: 361 TMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEF 420

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI-LLSNMYAEAGKWDEASKV 382
              ++L AC     +E G     ++  +  +H    +  L NMY + G  +EAS++
Sbjct: 421 ALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRI 476



 Score = 46.2 bits (108), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 106/268 (39%), Gaps = 46/268 (17%)

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
           A + C +L  +++  +     I     T L  +N  L    ++G +  A ++FD +  KD
Sbjct: 20  ASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKD 79

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMR-EDGVGYDP---------------VSY----- 262
             SW TLI GY    +   A+ LF+ MR E G+  DP               V+Y     
Sbjct: 80  EISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLH 139

Query: 263 ---------------IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
                           A+L   +  G + +G++ F EM   +V    + +  ++  L RA
Sbjct: 140 GYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNV----VSWTAIITGLVRA 195

Query: 308 GLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364
           G  ++A+     +    VE D+  +   L AC   G +  G        M K      ++
Sbjct: 196 GYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQA-MKKGFDVSSFV 254

Query: 365 --LLSNMYAEAGKWDEASKVRELMKSRE 390
              L+ MY + GK +    + E M  R+
Sbjct: 255 ANTLATMYNKCGKLEYGLTLFEKMSMRD 282


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 238/414 (57%), Gaps = 10/414 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++ R  EA  LF  + ++N+VSW AM++ +AQN     A +L   MP  NE   +  L
Sbjct: 184 YCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAML 243

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
              + A   GH      E  A +        +   NA+   + + G ++ A+ VF  +  
Sbjct: 244 VGYIQA---GHV-----EDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRE 295

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD+ +++ +I  Y Q     E+LS F EM   G++ +  S +  ++ CA LA +  G+E+
Sbjct: 296 RDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREV 355

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   +R      +F  ++++  Y + G +D A ++F     KD   WN++I GY   G  
Sbjct: 356 HAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLG 415

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYAC 299
           + A+ +F  MR  G+  D ++YI  LTACS+ G V++G++ F+ M  +S ++P   HY+C
Sbjct: 416 EQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSC 475

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGR+GL+E+A  LIKN+PVEPDA IWGAL+GACR++ N E+   AA+ L  L+P +
Sbjct: 476 MVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGN 535

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G Y+LLS++Y   G+W++ASK+R+ + SR   K+PGCSW++    V  F   D
Sbjct: 536 AGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGD 589



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 130/330 (39%), Gaps = 71/330 (21%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPI-----HNEFPNSVTLT-NVLPAC 68
           F  +  +   S+NA++A + +NRL   AL L R MP      +N   + ++L    LP  
Sbjct: 40  FEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDA 99

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
           A            A +        +    +L   Y + G L  A  +F  +  R+ VSY 
Sbjct: 100 A------------AALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYT 147

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
           +L+ G       +E+  LF EM       DVV++   +S                     
Sbjct: 148 VLLGGLLDAGRVNEARRLFDEMP----DRDVVAWTAMLSG-------------------- 183

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                          Y ++GRI  A  +FD +P ++  SW  +I GY   GEV+ A  LF
Sbjct: 184 ---------------YCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLF 228

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC--MVDLLG 305
           E M E     + VS+ A+L      G VE   + F+ M    V       AC  M+   G
Sbjct: 229 EVMPER----NEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVA------ACNAMMVGFG 278

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           + G M DA K +     E D   W A++ A
Sbjct: 279 QRG-MVDAAKTVFEKMRERDDGTWSAMIKA 307



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 133/302 (44%), Gaps = 55/302 (18%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           + + P  A+ L       ++VS+ +++  + ++ L   A++L ++MP  N    +V L  
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L A                                       G +N A+ +F+ +  RD
Sbjct: 153 LLDA---------------------------------------GRVNEARRLFDEMPDRD 173

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            V++  ++ GY Q    +E+ +LF EM     K +VVS+   IS  A    +   +++  
Sbjct: 174 VVAWTAMLSGYCQAGRITEARALFDEMP----KRNVVSWTAMISGYAQNGEVNLARKLFE 229

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
           V   ++  +      ++L  Y ++G ++ A ++F+ +P    A+ N +++G+G  G VD 
Sbjct: 230 VMPERNEVSW----TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDA 285

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
           A  +FE MRE   G    ++ A++ A      + +    F EM    V+P   +Y  ++ 
Sbjct: 286 AKTVFEKMRERDDG----TWSAMIKAYEQNEFLMEALSTFREMLWRGVRP---NYPSVIS 338

Query: 303 LL 304
           +L
Sbjct: 339 IL 340



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +FH    K+IV WN+M+  +AQ+ L  +AL +  +M +    P+ +T
Sbjct: 377 MYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGIT 436

Query: 61  LTNVLPACARGHFLRPGKEI 80
               L AC+    ++ G+EI
Sbjct: 437 YIGALTACSYTGKVKEGREI 456


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 168/485 (34%), Positives = 258/485 (53%), Gaps = 76/485 (15%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MY K  R  +A  +F  +A ++ VSWN MV+ +A N     A ++ R M      PN VT
Sbjct: 1017 MYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVT 1076

Query: 61   LTNVLPACAR-GHFLRP----------------------------------GKEIHARII 85
             T++L + AR G  +                                    GK IH  ++
Sbjct: 1077 WTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVV 1136

Query: 86   RKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDC----- 139
            + G    LF+ N+L  +Y K G +N A+ +F  I  ++ VS+N LI  Y+    C     
Sbjct: 1137 KGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFA 1196

Query: 140  ----------------------------------SESLSLFSEMRLLGMKHDVVSFMGAI 165
                                               E+L LF  M+L  +K + V+    +
Sbjct: 1197 IFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVL 1256

Query: 166  SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
            S CA LAA+  G+EIHG  +R  +  ++ V N +++ YT+SG     N +F+ +  KD  
Sbjct: 1257 SVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLI 1316

Query: 226  SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
            SWNT++ GYG+ G  + AI  F+ M +DG   D V+++A+L+ACSH GLV +G++ FD+M
Sbjct: 1317 SWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKM 1376

Query: 286  QAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344
              +  V+P   HYACMVDLLGRAGL+++A K++K++PVEP+A +WGALL +CR++ N E+
Sbjct: 1377 IKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEV 1436

Query: 345  GAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRD 404
                A  +F L  +  G Y+LLSN+YA +G+W++++KVR   K++  KK PG SW+Q + 
Sbjct: 1437 AEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKK 1496

Query: 405  EVQDF 409
            +V  F
Sbjct: 1497 KVYMF 1501



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 143/323 (44%), Gaps = 42/323 (13%)

Query: 22   NIVSWNAMV-ANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80
            N++ WN+++ AN A    E +AL++   M       +  T   V+ ACA     +  + +
Sbjct: 937  NLLLWNSILRANVAHGYCE-EALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSV 995

Query: 81   HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDC 139
            H  ++  G  ++L + N L  MY K G ++ A+ VF  ++ R  VS+N ++ GY+   DC
Sbjct: 996  HGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDC 1055

Query: 140  S-----------------------------------ESLSLFSEMRLLGMKHDVVSFMGA 164
                                                E++ LF  MR+ G+     +    
Sbjct: 1056 HGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVV 1115

Query: 165  ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
            +S   +LAA  +GK IHG  ++     +LFV NS++  Y + G ++ A  +F  +  K+ 
Sbjct: 1116 LSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNI 1175

Query: 225  ASWNTLILGYGMLGEVDTAINLFEAMREDG----VGYDPVSYIAILTACSHGGLVEKGKK 280
             SWN LI  Y  LG  D A  +F  + +      V  + VS+ A++   +  G  E+  +
Sbjct: 1176 VSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALE 1235

Query: 281  YFDEMQADSVKPTEMHYACMVDL 303
             F  MQ   VK   +  A ++ +
Sbjct: 1236 LFRRMQLAKVKANSVTIASVLSV 1258



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 10/266 (3%)

Query: 45   LVREMPIHNEFPNSVTL---TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101
            L R + I +  PN+  L    ++L  C++ H     ++IH++II  G +   FL   +  
Sbjct: 856  LSRSISIIHHQPNNDVLDFFNDLLQQCSKSHL---SQQIHSQIIVTGSHRSAFLAARVVS 912

Query: 102  MYAKCGCLNLAQNVFNIS----FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157
            +YA  G ++ AQ VF +S    F + + +N ++        C E+L ++  MR LG+  D
Sbjct: 913  VYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSAD 972

Query: 158  VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
              +F   I ACA + + K  + +HG  +      +L V N ++  Y + GR+D A K+F+
Sbjct: 973  GFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFE 1032

Query: 218  CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
             + V+   SWNT++ GY +  +   A  +F  M   G+  + V++ ++L++ +  G   +
Sbjct: 1033 RMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVE 1092

Query: 278  GKKYFDEMQADSVKPTEMHYACMVDL 303
              + F  M+   +  T    A ++ +
Sbjct: 1093 TMELFGRMRMRGIGATAEALAVVLSV 1118


>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Brachypodium distachyon]
          Length = 773

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 150/407 (36%), Positives = 244/407 (59%), Gaps = 6/407 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPI--HNEFPNS 58
           MY K      A  +F  + +++  SW+ MVA + +  L++K L+L R+M    H+EF   
Sbjct: 366 MYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCD 425

Query: 59  VT-LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           +T L + + +C+R   LR G+ +H   I+  L+ +  +TN+L  MY +CG   LA  +F 
Sbjct: 426 ITSLVSAISSCSRLGRLRLGQSVHCYSIKCLLDEN-SITNSLIGMYGRCGNFELACKIFA 484

Query: 118 IS--FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           ++   RD V++N LI  YS     +++LSL+ +M    +K +  + +  ISACANLAA++
Sbjct: 485 VAKLRRDVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACANLAALE 544

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G+ +H       L + + ++ +++D YT+ G++  A  IFD +  +D  +WN +I GYG
Sbjct: 545 HGELLHSYVKNMGLESDVSISTALVDMYTKCGQLGTARGIFDSMLQRDVVTWNVMISGYG 604

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
           M GE + A+ LF  M    +  + ++++AIL+AC H GLV++G+K F  M    ++P   
Sbjct: 605 MHGEANQALKLFSEMEAGSIKPNSLTFLAILSACCHAGLVDEGRKLFIRMGGYRLEPNLK 664

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYACMVDLLG++GL+++A  L+  +P++PD  +WG LL AC+++ N E+G   A+  F  
Sbjct: 665 HYACMVDLLGKSGLLQEAEDLVLAMPIKPDGGVWGTLLSACKVHDNFEMGLRVAKKAFSS 724

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQT 402
            P++ GYYIL+SN Y  A KWDE  K+R+ MK+   +K  G S V  
Sbjct: 725 DPRNDGYYILMSNSYGSAEKWDEIEKLRDTMKNYGVEKGVGWSAVDV 771



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 162/346 (46%), Gaps = 15/346 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKAL----QLVREMPIHNEFP 56
           MYA+     +A  LF  + E+++V+W A+V+   +N    K +    Q++R        P
Sbjct: 160 MYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAGDSGARP 219

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           NS T+ + L AC     L  G+ +H   +++G+     + +AL  MY+KC     A  +F
Sbjct: 220 NSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILF 279

Query: 117 -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
             ++ +D VS+  LI  Y +     E++ LF EM   G++ D V     +S   + A + 
Sbjct: 280 PELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVN 339

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           +GK  H V IR++    + +ANS++  Y +   +D+A  +F  L  +D  SW+ ++ GY 
Sbjct: 340 RGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYC 399

Query: 236 MLGEVDTAINLFEAMR---EDGVGYDPVSYIAILTACSHGGLVEKGKK---YFDEMQADS 289
             G     + L+  M+    D    D  S ++ +++CS  G +  G+    Y  +   D 
Sbjct: 400 KAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYSIKCLLDE 459

Query: 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
              T      ++ + GR G  E A K+     +  D   W AL+ +
Sbjct: 460 NSITNS----LIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISS 501



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 111/268 (41%), Gaps = 10/268 (3%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNILIVGYSQTS 137
            +HA     GL+        L   Y+  G    A   F+ S   D   +N L+  +   S
Sbjct: 33  RLHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCAS 92

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL---HTHLF 194
           D   +LS    MR  G +    +   A SA A LAA+  G  +H  +++  L      + 
Sbjct: 93  DFDSALSAHRRMRASGARPSRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSVA 152

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI-NLFEAMRED 253
           V++S++  Y R G +  A K+FD +  +D  +W  ++ G    GE    I  L + +R  
Sbjct: 153 VSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLA 212

Query: 254 G-VGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
           G  G  P S    + L AC   G +  G+        + ++   +  + +  +  +  + 
Sbjct: 213 GDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMT 272

Query: 311 EDAVKLIKNLPVEPDANIWGALLGA-CR 337
           EDA  L   L  E D   W  L+GA CR
Sbjct: 273 EDACILFPEL-TEKDVVSWTGLIGAYCR 299


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/416 (35%), Positives = 231/416 (55%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  ++EKN V+W  ++  + Q   ++ AL L  +M       +   
Sbjct: 155 MYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYV 214

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            + VL ACA    L  G++IH  I++ GL  ++ +   L D Y KC  L  A   F  IS
Sbjct: 215 FSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWIS 274

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             ++VS++ LI GY Q  +  E+L  F  +R   +  +  ++     AC+ LA    G +
Sbjct: 275 EPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQ 334

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   I+  L  +    ++++  Y+R GR+D A ++F+ +   D+ +W  +I GY   G 
Sbjct: 335 AHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGN 394

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LF  M++ GV  + V++IA+LTACSH GLV +G++Y + M ++  V  T  HY 
Sbjct: 395 APEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYD 454

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+  RAG +++A++LI+++P  PDA  W  LLG C  Y N+E+G  AAE+LF L P+
Sbjct: 455 CMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPE 514

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               YIL+ N+YA  GKW EA+ VR++M  R  +K   CSW+  + +V  F+V D+
Sbjct: 515 DTAGYILMFNLYASFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDK 570



 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 189/367 (51%), Gaps = 17/367 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    A+A  +F  + E+N+VSWN +++ +A+N +  K   +   M      PN  T
Sbjct: 54  MYCKCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGST 113

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
               L +      L  GK+IH+  IR GL  +  +  A+++MY KCG L  A+ VF  +S
Sbjct: 114 YIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMS 173

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ V++  ++VGY+Q     ++L+LF++M   G++ D   F   + ACA L  +  G++
Sbjct: 174 EKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQ 233

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  ++  L + + V   ++DFY +   ++ A K F+ +   +  SW+ LI GY  +GE
Sbjct: 234 IHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGE 293

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY-- 297
            + A+  FE++R   V  +  +Y +I  ACS       G     +  AD++K + + Y  
Sbjct: 294 FEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGA----QAHADAIKSSLVAYQH 349

Query: 298 --ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
             + M+ +  R G ++ A ++ +++  +PDA  W A++      GN      A E L + 
Sbjct: 350 GESAMITMYSRCGRLDYATRVFESID-DPDAVAWTAIIAGYAYQGN------APEALKLF 402

Query: 356 KP-QHCG 361
           +  Q CG
Sbjct: 403 RRMQDCG 409



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 167/366 (45%), Gaps = 40/366 (10%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +  AC +   L  G+  H ++ R   N   FL N++  MY KCG L  A+ VF+ +  R+
Sbjct: 16  LFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEMRERN 75

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            VS+N +I  Y++     +   +FS M  L  K +  +++G + +  N + ++ GK+IH 
Sbjct: 76  LVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHS 135

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             IR  L ++  V  +I + Y + G ++ A  +F+ +  K++ +W  +++GY        
Sbjct: 136 HAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMD 195

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKK----------- 280
           A+ LF  M  +GV  D   +  +L AC+           HG +V+ G +           
Sbjct: 196 ALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVD 255

Query: 281 -YFDEMQADSV--------KPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANI 328
            Y      +S         +P ++ ++ ++    + G  E+A+K  ++L    V+ ++  
Sbjct: 256 FYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFT 315

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY---ILLSNMYAEAGKWDEASKVREL 385
           + ++  AC    +   GA A  H   +K     Y      +  MY+  G+ D A++V E 
Sbjct: 316 YTSIFQACSALADFNSGAQA--HADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFES 373

Query: 386 MKSREA 391
           +   +A
Sbjct: 374 IDDPDA 379



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 1/174 (0%)

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           S+     AC  + ++  G+  H    R   +   F+ NS+L  Y + G +  A K+FD +
Sbjct: 12  SYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEM 71

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
             ++  SWNT+I  Y   G  D    +F  M E     +  +YI  L +  +   +E GK
Sbjct: 72  RERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGK 131

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +         +         + ++  + G +E A  + + +  E +A  W  ++
Sbjct: 132 QIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMS-EKNAVAWTGIM 184


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 148/416 (35%), Positives = 244/416 (58%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +F  +  K+++ WN++++ ++    +++A+ L   M       N  T
Sbjct: 333 MYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTT 392

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
           L+ +L + A        +++H   I+ G  +D ++ N+L D Y KC  L  A  VF +  
Sbjct: 393 LSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCP 452

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V+Y  +I  YSQ     E+L ++  M+   +K D   F    +ACANL+A +QGK+
Sbjct: 453 AEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQ 512

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   ++  L + +F  NS+++ Y + G ID A+ IF+ +  +   SW+ +I G    G 
Sbjct: 513 IHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGH 572

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYA 298
              A+ LF  M ++G+  + ++ +++L+AC+H GLV + +++F  M+    + PT+ HYA
Sbjct: 573 GRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYA 632

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGR G +++A+ L+K +P +  A +WGALLGA RI+ N+ELG  AAE L  L+P+
Sbjct: 633 CMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPE 692

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G +ILL+N+YA  G WD  +KVR  MK+   KK PG SW++ +D+V  F+V DR
Sbjct: 693 KSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDR 748



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 178/342 (52%), Gaps = 2/342 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS  P  A  +F+ I + +IVSWNA++A    +     AL+L+ +M  +   P+  T
Sbjct: 232 MYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFT 291

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
           L++ L ACA    ++ G+++H+ +++  +  D F+   L DMY+KCG L  A+ VF++  
Sbjct: 292 LSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMP 351

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D + +N +I GYS      E++SLF+ M   G++ +  +    + + A   A    ++
Sbjct: 352 XKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQ 411

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H ++I+       +VANS+LD Y +   ++ A K+F+  P +D  ++ ++I  Y   G 
Sbjct: 412 VHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGL 471

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ ++  M++  +  D   + ++  AC++    E+GK+    +    +         
Sbjct: 472 GEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNS 531

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           +V++  + G ++DA  +   +      + W A++G    +G+
Sbjct: 532 LVNMYAKCGSIDDASCIFNEISWRGIVS-WSAMIGGLAQHGH 572



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 125/464 (26%), Positives = 201/464 (43%), Gaps = 92/464 (19%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPI----HNEF- 55
           +Y+K      A  L  + +E ++VSW+A+++ + QN    +AL    EM +     NEF 
Sbjct: 91  LYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFT 150

Query: 56  -----------------------------------PNSVTLTNVLPACARGHFLRPGKEI 80
                                              PN  +L+ VL ACA       G ++
Sbjct: 151 FSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKV 210

Query: 81  HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDC 139
           H  +I+ G + D F  NAL DMYAK GC   A  VF  I   D VS+N +I G       
Sbjct: 211 HGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKN 270

Query: 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
             +L L  +M    +   + +   A+ ACA +  +K G+++H   ++  +    FV   +
Sbjct: 271 DLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGL 330

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
           +D Y++ G +  A  +FD +P KD   WN++I GY   G    A++LF  M ++G+ ++ 
Sbjct: 331 IDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQ 390

Query: 260 VSYIAILTACS-----------HGGLVEKGKKY------------------FDEMQADSV 290
            +   IL + +           H   ++ G +Y                   D  +   V
Sbjct: 391 TTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEV 450

Query: 291 KPTE--MHYACMVDLLGRAGLMEDAVKL---IKNLPVEPDANIWGALLGACRIYGNVELG 345
            P E  + Y  M+    + GL E+A+K+   +++  ++PDA I+ +L  AC      E G
Sbjct: 451 CPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQG 510

Query: 346 AWAAEHLFMLKPQHCGYYILLS---------NMYAEAGKWDEAS 380
                H+ +LK   CG   LLS         NMYA+ G  D+AS
Sbjct: 511 KQI--HVHVLK---CG---LLSDVFAGNSLVNMYAKCGSIDDAS 546



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 161/371 (43%), Gaps = 70/371 (18%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN-VFNISFRDEVSYNILIVGYSQ 135
           G  IHARIIR GL     L N L ++Y+KC C  +A+  V + S  D VS++ LI GY Q
Sbjct: 69  GMAIHARIIRLGLLG---LRNRLVNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQ 125

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL------ 189
                E+L  + EM LLG K +  +F   +  C+    ++ GK+IH V +   +      
Sbjct: 126 NGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGIS 185

Query: 190 -------------------------HTHL---------FVANSILDFYTRSGRIDLANKI 215
                                    H +L         F AN++LD Y +SG  + A  +
Sbjct: 186 PNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAV 245

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275
           F  +P  D  SWN +I G  +  + D A+ L   M    V     +  + L AC+  GLV
Sbjct: 246 FYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLV 305

Query: 276 EKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           + G++    +    ++P       ++D+  + GL++DA +++ +L    D  +W +++  
Sbjct: 306 KLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDA-RMVFDLMPXKDVIVWNSIISG 364

Query: 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYI----LLSNMYAEAGKWDEASKVRELMKSREA 391
              Y N                  CGY I    L +NMY E  ++++ +    L  +  +
Sbjct: 365 ---YSN------------------CGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGS 403

Query: 392 KKNPGCSWVQT 402
           + N  C  V T
Sbjct: 404 QANGFCEQVHT 414


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 144/416 (34%), Positives = 248/416 (59%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +     +A  +   + E+++VSW  M++ ++Q    ++AL L  +M      PN  T
Sbjct: 54  MYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYT 113

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL +C+    +  GK++H+ +++      +F+ ++L DMYAK   +  A+ VF+ + 
Sbjct: 114 LATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP 173

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS   +I GY+Q     E+L LF ++   GM+ + V+F   ++A + LA++  GK+
Sbjct: 174 ERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQ 233

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + +RK L   + + NS++D Y++ G++  + ++FD +  +   SWN +++GYG  G 
Sbjct: 234 VHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGL 293

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
               I+LF+ + ++ V  D V+ +A+L+ CSHGGLV++G   FD + +  S      HY 
Sbjct: 294 GHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYG 352

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C++DLLGR+G +E A+ LI+N+P E   +IWG+LLGACR++ NV +G   A+ L  ++P+
Sbjct: 353 CIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPE 412

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G Y++LSN+YA AG W +  KVR+LM  +   K PG SW+     +  F  ++R
Sbjct: 413 NAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSER 468



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 175/364 (48%), Gaps = 48/364 (13%)

Query: 65  LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDE 123
           + AC     L  G+++HAR+I       +FL   L  MY +CG L+ A+NV + +  R  
Sbjct: 17  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76

Query: 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGV 183
           VS+  +I GYSQT    E+L LF +M   G   +  +    +++C+   +I QGK++H +
Sbjct: 77  VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 136

Query: 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
            ++ +  +H+FV +S+LD Y +S  I  A ++FD LP +D  S   +I GY   G  + A
Sbjct: 137 LVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEA 196

Query: 244 INLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEK--------------- 277
           ++LF  +  +G+  + V++  ++TA S           H  ++ K               
Sbjct: 197 LDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDM 256

Query: 278 ---------GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDA 326
                     ++ FD M   SV    + +  M+   GR GL  + + L K+L   V+PD+
Sbjct: 257 YSKCGKLLYSRRVFDNMLERSV----VSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDS 312

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQ----HCGYYILLSNMYAEAGKWDEASKV 382
               A+L  C   G V+ G    + +  +K Q    H G+Y  + ++   +G+ ++A  +
Sbjct: 313 VTLLAVLSGCSHGGLVDEGLDIFDTV--VKEQSALLHTGHYGCIIDLLGRSGRLEKALNL 370

Query: 383 RELM 386
            E M
Sbjct: 371 IENM 374



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 79/173 (45%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M L G       +  AI+AC    A+ +G+++H   I       +F+   ++  Y R G 
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +D A  + D +P +   SW T+I GY        A++LF  M   G   +  +   +LT+
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
           CS    + +GK+    +   + +      + ++D+  ++  +++A ++   LP
Sbjct: 121 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP 173


>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 736

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 141/403 (34%), Positives = 242/403 (60%), Gaps = 2/403 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + E+N+++W A+++  +QN +   +L L  +M      PN +T  + L AC+    
Sbjct: 45  VFDEMLERNVITWTAIISGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGLQA 104

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVG 132
           L  G++IH  + + G+  +L + +AL D+Y+KCG L  A+ VF  +   DEVS  +++VG
Sbjct: 105 LEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVG 164

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           ++Q     E++  F +M  +G + D       + AC    ++  GK+IH + I++ L ++
Sbjct: 165 FTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACGVDTSLGLGKQIHSLVIKRSLGSN 224

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
            FV N +++ Y++ G +  + K+F+ L  ++S SWN++I  +   G+   A+ L+E M +
Sbjct: 225 PFVGNGLINMYSKCGELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRLYEEMIQ 284

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLME 311
           +G     ++++++L ACSH GLV+KG K+   M +   + P   HYAC+VD+LGRAGL+ 
Sbjct: 285 EGAVPTDLTFLSLLHACSHVGLVDKGMKFLKSMTKVYGISPRAEHYACVVDMLGRAGLLN 344

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371
           +A  LI+ L ++PD  IW ALLGAC I G+ E+G +AAE L +L+P+    Y+LL+N+Y+
Sbjct: 345 EAKSLIERLSIKPDVLIWQALLGACSIRGDTEIGKYAAEQLLLLEPKKPAPYVLLANIYS 404

Query: 372 EAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G+WDE ++  + MK     K  G SW++   +V  FVV D+
Sbjct: 405 SKGRWDERARTIKRMKEMGVAKETGISWIEIEKKVHSFVVEDK 447



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 132/260 (50%), Gaps = 21/260 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQ-LVREMPIHNEF-PNS 58
           +Y+K     +A  +F +  E + VS   ++  F QN  E +A++  V+ + I  E  PN 
Sbjct: 133 LYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNM 192

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           V+   VL AC     L  GK+IH+ +I++ L  + F+ N L +MY+KCG L  +  VFN 
Sbjct: 193 VSA--VLGACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNG 250

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           ++ R+ VS+N +I  +++  D   +L L+ EM   G     ++F+  + AC+++  + +G
Sbjct: 251 LTCRNSVSWNSMIAAFARHGDGFRALRLYEEMIQEGAVPTDLTFLSLLHACSHVGLVDKG 310

Query: 178 -------KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNT 229
                   +++G++ R   +        ++D   R+G ++ A  + + L +K D   W  
Sbjct: 311 MKFLKSMTKVYGISPRAEHYA------CVVDMLGRAGLLNEAKSLIERLSIKPDVLIWQA 364

Query: 230 LILGYGMLGEVDTAINLFEA 249
           L+    + G  DT I  + A
Sbjct: 365 LLGACSIRG--DTEIGKYAA 382



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 102/248 (41%), Gaps = 70/248 (28%)

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE-------------- 248
           Y + G    A K+FD +P +D+ SWNT++ G+   G++DT   +F+              
Sbjct: 2   YFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAII 61

Query: 249 ------AMREDGVGY---------DP--VSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
                  M ED +G          +P  ++Y++ LTACS    +EKG++    +    ++
Sbjct: 62  SGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGIQ 121

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIK--------------------------------- 318
                 + ++DL  + G +EDA ++ +                                 
Sbjct: 122 SNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKM 181

Query: 319 -NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAG 374
            N+  E D N+  A+LGAC +  +  LG     H  ++K        +   L NMY++ G
Sbjct: 182 VNIGTEVDPNMVSAVLGACGV--DTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCG 239

Query: 375 KWDEASKV 382
           +  E+ KV
Sbjct: 240 ELQESIKV 247


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 147/447 (32%), Positives = 256/447 (57%), Gaps = 38/447 (8%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-----FPNSVTLTNVL 65
           A+ LF  +A+ N   +NAM+  +  N++ + A+ + ++M  H+      FP+  T   V+
Sbjct: 65  ANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVV 124

Query: 66  PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEV 124
            +CA       GK++H  + + G   +  + N+L +MY KC  L+ A  VF  ++ RD V
Sbjct: 125 KSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAV 184

Query: 125 SYNILIVG-------------------------------YSQTSDCSESLSLFSEMRLLG 153
           S+N LI G                               Y++    +++L  F  M+++G
Sbjct: 185 SWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVG 244

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
           ++ D +S +  + ACA L A++ GK IH    +     ++ V N++++ Y + G ID   
Sbjct: 245 IEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGR 304

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
           ++FD +  +D  SW+T+I+G    G    AI LF+ M++  +  + ++++ +L+AC+H G
Sbjct: 305 RLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAG 364

Query: 274 LVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
           L+ +G +YF+ M+ D +++P   HY C+V+LLG +G ++ A++LIK +P++PD+ IWG+L
Sbjct: 365 LLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSL 424

Query: 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392
           L +CR + N+E+   A EHL  L+P   G Y+LLSN+YA+ GKWD  S++R+LM+S+  K
Sbjct: 425 LSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMK 484

Query: 393 KNPGCSWVQTRDEVQDFVVNDRMKTFT 419
           K PGCS ++  + VQ+F   D  K F+
Sbjct: 485 KTPGCSSIEVDNMVQEFASGDDSKPFS 511



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 132/265 (49%), Gaps = 34/265 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWN-------------------------------AM 29
           MY K     +A  +F  + E++ VSWN                               A+
Sbjct: 161 MYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAI 220

Query: 30  VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
           V+ +A+      AL+  R M +    P+ ++L +VLPACA+   L  GK IH    + G 
Sbjct: 221 VSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGF 280

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
             ++ + NAL +MYAKCG ++  + +F+ ++ RD +S++ +IVG +      E++ LF E
Sbjct: 281 LRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQE 340

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH-LHTHLFVANSILDFYTRSG 207
           M+   ++ ++++F+G +SACA+   + +G        R + +   +     +++    SG
Sbjct: 341 MQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSG 400

Query: 208 RIDLANKIFDCLPVK-DSASWNTLI 231
           R+D A ++   +P+K DSA W +L+
Sbjct: 401 RLDQALELIKKMPMKPDSAIWGSLL 425


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 144/415 (34%), Positives = 244/415 (58%), Gaps = 35/415 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F  +  K++VSWN+MVA +A N     AL++ REM  + + P+  T
Sbjct: 163 MYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCT 222

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + +++PA A                          T++   +Y         + +F N+ 
Sbjct: 223 MASLMPAVAN-------------------------TSSENVLYV--------EKIFVNLE 249

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ +S+N++I  Y + S  ++++ L+ +M    ++ D ++F   + AC +L+A+  G+ 
Sbjct: 250 RKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRR 309

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH    +K L  +L + NS++D Y R G +D A ++FD +  +D ASW +LI  YGM G+
Sbjct: 310 IHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQ 369

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LF  M   G   D ++++AIL+ACSH GL+++G+ YF +M  D  + P   HYA
Sbjct: 370 GCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYA 429

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGRAG +++A  +IK +P+EP+  +W  LL +CR++ N+++G  AA++L  L P+
Sbjct: 430 CLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPE 489

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             GYY+LLSN+YA+AG+W E +++R +MK ++ +K PG S V+  ++V  F+  D
Sbjct: 490 QSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGD 544



 Score = 38.5 bits (88), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 12/107 (11%)

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANS---------ILDFYTRSGRIDLANKIFDCLPVKD 223
           A+ Q  +I  +   K LHT +F  NS         ++  Y   G   L  K+FD +  ++
Sbjct: 27  ALDQNPDIKTL---KKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRN 83

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
              +N +I  Y      D  + +F  M   G   D  +Y  +L ACS
Sbjct: 84  VVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACS 130


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 155/416 (37%), Positives = 243/416 (58%), Gaps = 7/416 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  + ++N+VSW  M++ ++  +L  KAL+ +  M      PN  T
Sbjct: 9   MYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFT 68

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++VL AC     LR   ++H  II+ GL+ D+F+ +AL D+Y++ G L  A  VF+ + 
Sbjct: 69  YSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMV 125

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V ++ +I G++Q SD  E+L LF  M+  G      +    + AC  LA ++ G++
Sbjct: 126 TGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQ 185

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H V + K+    L + N++LD Y + G ++ AN +F  +  KD  SW+T+I G    G 
Sbjct: 186 VH-VHVLKY-DQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGY 243

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+ LFE+M+  G+  + V+ + +L ACSH GLVE+G  YF  M +   + P   HY 
Sbjct: 244 SKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYG 303

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLGRAG + +AV LI  +  EPDA  W ALL ACR++ NV++   AA+ +  L PQ
Sbjct: 304 CMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQ 363

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G Y+LLSN+YA   +W++ ++VR  M +R  KK PGCSW++   ++  F++ DR
Sbjct: 364 DAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDR 419



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 156/324 (48%), Gaps = 44/324 (13%)

Query: 94  FLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL 152
           FL N L +MY K G L+ AQ+VF+ +  R+ VS+  +I  YS      ++L     M   
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G++ ++ ++   + AC  L  ++Q   +H   I+  L + +FV ++++D Y+R G ++ A
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNLRQ---LHCCIIKIGLDSDVFVRSALIDVYSRWGELENA 117

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
            ++FD +   D   W+++I G+    + D A+ LF+ M+  G      +  ++L AC+  
Sbjct: 118 LRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGL 177

Query: 273 GLVEKGK-------KY-------------------FDEMQADSVKPTE---MHYACMVDL 303
            L+E G+       KY                    ++  A  V+  E   + ++ M+  
Sbjct: 178 ALLELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAG 237

Query: 304 LGRAGLMEDAVKL---IKNLPVEPDANIWGALLGACRIYGNVELGAW---AAEHLFMLKP 357
           L + G  ++A+KL   +K L ++P+      +L AC   G VE G +   + + LF + P
Sbjct: 238 LAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDP 297

Query: 358 --QHCGYYILLSNMYAEAGKWDEA 379
             +H G  I   ++   AG+  EA
Sbjct: 298 GREHYGCMI---DLLGRAGRLSEA 318


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 153/421 (36%), Positives = 250/421 (59%), Gaps = 7/421 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN--- 57
           MY+K      A  +F+++   +++SWN+M+++ AQ+ LE +++ L  ++      P+   
Sbjct: 330 MYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFT 389

Query: 58  --SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
             S+TL     AC     L  GK+IHA  I+ G + DL + + + DMY KCG +  A  V
Sbjct: 390 LASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIV 449

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           FN IS  D+V++  +I G     +  ++L ++  MR   +  D  +F   I A + + A+
Sbjct: 450 FNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTAL 509

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           +QG+++H   I+    +  FV  S++D Y + G I+ A ++F  + V++ A WN +++G 
Sbjct: 510 EQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGL 569

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
              G  + A+NLF++M+  G+  D VS+I IL+ACSH GL  +  +Y   M  D  ++P 
Sbjct: 570 AQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPE 629

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY+C+VD LGRAGL+++A K+I+ +P +  A+I  ALLGACRI G+VE G   A  LF
Sbjct: 630 IEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLF 689

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            L+P     Y+LLSN+YA A +WD+ +  R++MK +  KK+PG SW+  ++ +  FVV+D
Sbjct: 690 ALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDD 749

Query: 414 R 414
           R
Sbjct: 750 R 750



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 179/358 (50%), Gaps = 22/358 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFA-----QNRLELKALQLVREMPIHNEF 55
           MY+K    + A  +F    E+++V+WNA++  +A      +    + L L R +      
Sbjct: 121 MYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGS 180

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
              +TL  VL  C     L   + +H   I+ GL +D+F++ AL ++Y+KCG +  A+ +
Sbjct: 181 TTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLL 240

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC--ANLA 172
           F+ +  RD V +N+++ GY Q     E+  LFSE    G++ D  S    ++ C  A   
Sbjct: 241 FDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTD 300

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
            ++ GK++HG+ ++  L + + VANS+++ Y++ G    A ++F+ +   D  SWN++I 
Sbjct: 301 DLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMIS 360

Query: 233 GYGMLGEVDTAINLF-----EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
                   + ++NLF     E ++ D      ++      AC    L+++GK    ++ A
Sbjct: 361 SCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGK----QIHA 416

Query: 288 DSVKP---TEMHY-ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
            ++K    +++H  + ++D+  + G M +A  ++ N    PD   W +++  C   GN
Sbjct: 417 HAIKAGFDSDLHVNSGILDMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGCVDNGN 473



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 107/217 (49%), Gaps = 8/217 (3%)

Query: 72  HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNILI 130
           H L  GK  HARI+  G   D FL+N L  MY+KCG L+ A+ VF+ +  RD V++N ++
Sbjct: 91  HNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAIL 150

Query: 131 VGYSQTSDCS-----ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
             Y+ + D +     E L LF  +R        ++    +  C N   +   + +HG  I
Sbjct: 151 GAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAI 210

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
           +  L   +FV+ ++++ Y++ GR+  A  +FD +  +D   WN ++ GY  LG    A  
Sbjct: 211 KIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQ 270

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGL--VEKGKK 280
           LF      G+  D  S   IL  C   G   +E GK+
Sbjct: 271 LFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQ 307


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 143/402 (35%), Positives = 241/402 (59%), Gaps = 2/402 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  +  +A  +F  +   +IV W AM+  + QN+  L ALQL       +  PNSVT
Sbjct: 267 MYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVT 326

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  V+ A A+   L  G+ +HA  ++ G      + NAL DMYAKC  L  A ++F  I 
Sbjct: 327 IATVISASAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRIL 386

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V++N ++ GYS+    +ESL LF+ MR+ G+  D +S + A+SAC  LA +  GK 
Sbjct: 387 IKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIGKG 446

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   I+    ++++V  ++L+ Y++   +  A ++F+ +  ++S +W+ +I GYGM G+
Sbjct: 447 FHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGD 506

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              +I+LF  M ++ +  + V + +IL+ACSH G+V  GK+YFD M    ++ P+  HYA
Sbjct: 507 SAGSIDLFNEMLKENIHPNEVVFTSILSACSHTGMVTAGKEYFDSMARHFNITPSMKHYA 566

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD++ RAG +E+A++ I+N+P++   ++WG+ L  C+++  +E G  A + +  L P+
Sbjct: 567 CMVDVMARAGNLEEALEFIQNMPIKAGISVWGSFLHGCKLHSRLEFGEEAIKKMAALHPE 626

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
              +Y+L+SN+Y   G+WD++  +R  M+ +   K PGCS V
Sbjct: 627 TPDFYVLMSNLYTSYGRWDKSQTIRRWMQEQGLVKLPGCSSV 668



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 147/270 (54%), Gaps = 1/270 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+     A  +F  + E+N+VSW +M++   QN +  + L L  EM   N  P+  T
Sbjct: 166 MYAKAGDLENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYT 225

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VL ACA    L  G+ IH  +I+ GL+ + F++ +L DMYAKC  +  A+ VF+ + 
Sbjct: 226 MVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELE 285

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           F D V +  +IVGY+Q     ++L LF   + + +  + V+    ISA A L  +  G+ 
Sbjct: 286 FVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRS 345

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + ++        V N+++D Y +   +  AN IF  + +KD  +WN+++ GY   G 
Sbjct: 346 VHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGM 405

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTAC 269
            + ++ LF  MR  G+  D +S +  L+AC
Sbjct: 406 ANESLVLFNRMRMQGISPDAISVVNALSAC 435



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 132/283 (46%), Gaps = 12/283 (4%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLT--NALTDMYAKCGCLNLAQN 114
           ++  L  +LPAC     LR  + +H R++         +     L   YA  G L  A+ 
Sbjct: 20  DASALVLLLPACGT---LRSLRALHGRLLLLTSGLLRGIRARTKLLSCYAALGDLASARG 76

Query: 115 VFNISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRL---LGMKHDVVSFMGAISACAN 170
           V + + R D  +Y +++         +++++L  +MR       + DVV  + A+ AC  
Sbjct: 77  VLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPAAAQADVVLSL-ALKACVR 135

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
            A  + G+ +H   + K      FV NS++D Y ++G ++ A K+FD +P ++  SW ++
Sbjct: 136 SADFRYGRRLH-CDVVKAGGADGFVMNSLVDMYAKAGDLENARKVFDRVPERNVVSWTSM 194

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           + G    G  +  + LF  MR+D V     + +++L AC+  G + +G+     +    +
Sbjct: 195 LSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGL 254

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                  A ++D+  +   +EDA ++   L    D  +W A++
Sbjct: 255 STNSFISASLLDMYAKCEKVEDARRVFDELEF-VDIVLWTAMI 296


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 168/485 (34%), Positives = 258/485 (53%), Gaps = 76/485 (15%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  R  +A  +F  +A ++ VSWN MV+ +A N     A ++ R M      PN VT
Sbjct: 179 MYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVT 238

Query: 61  LTNVLPACAR-GHFLRP----------------------------------GKEIHARII 85
            T++L + AR G  +                                    GK IH  ++
Sbjct: 239 WTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVV 298

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDC----- 139
           + G    LF+ N+L  +Y K G +N A+ +F  I  ++ VS+N LI  Y+    C     
Sbjct: 299 KGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFA 358

Query: 140 ----------------------------------SESLSLFSEMRLLGMKHDVVSFMGAI 165
                                              E+L LF  M+L  +K + V+    +
Sbjct: 359 IFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVL 418

Query: 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
           S CA LAA+  G+EIHG  +R  +  ++ V N +++ YT+SG     N +F+ +  KD  
Sbjct: 419 SVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLI 478

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           SWNT++ GYG+ G  + AI  F+ M +DG   D V+++A+L+ACSH GLV +G++ FD+M
Sbjct: 479 SWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKM 538

Query: 286 QAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344
             +  V+P   HYACMVDLLGRAGL+++A K++K++PVEP+A +WGALL +CR++ N E+
Sbjct: 539 IKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEV 598

Query: 345 GAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRD 404
               A  +F L  +  G Y+LLSN+YA +G+W++++KVR   K++  KK PG SW+Q + 
Sbjct: 599 AEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKK 658

Query: 405 EVQDF 409
           +V  F
Sbjct: 659 KVYMF 663



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 143/323 (44%), Gaps = 42/323 (13%)

Query: 22  NIVSWNAMV-ANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80
           N++ WN+++ AN A    E +AL++   M       +  T   V+ ACA     +  + +
Sbjct: 99  NLLLWNSILRANVAHGYCE-EALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSV 157

Query: 81  HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDC 139
           H  ++  G  ++L + N L  MY K G ++ A+ VF  ++ R  VS+N ++ GY+   DC
Sbjct: 158 HGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDC 217

Query: 140 S-----------------------------------ESLSLFSEMRLLGMKHDVVSFMGA 164
                                               E++ LF  MR+ G+     +    
Sbjct: 218 HGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVV 277

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           +S   +LAA  +GK IHG  ++     +LFV NS++  Y + G ++ A  +F  +  K+ 
Sbjct: 278 LSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNI 337

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDG----VGYDPVSYIAILTACSHGGLVEKGKK 280
            SWN LI  Y  LG  D A  +F  + +      V  + VS+ A++   +  G  E+  +
Sbjct: 338 VSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALE 397

Query: 281 YFDEMQADSVKPTEMHYACMVDL 303
            F  MQ   VK   +  A ++ +
Sbjct: 398 LFRRMQLAKVKANSVTIASVLSV 420



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 128/256 (50%), Gaps = 10/256 (3%)

Query: 45  LVREMPIHNEFPNSVTL---TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101
           L R + I +  PN+  L    ++L  C++ H     ++IH++II  G +   FL   +  
Sbjct: 18  LSRSISIIHHQPNNDVLDFFNDLLQQCSKSHL---SQQIHSQIIVTGSHRSAFLAARVVS 74

Query: 102 MYAKCGCLNLAQNVFNIS----FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157
           +YA  G ++ AQ VF +S    F + + +N ++        C E+L ++  MR LG+  D
Sbjct: 75  VYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSAD 134

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
             +F   I ACA + + K  + +HG  +      +L V N ++  Y + GR+D A K+F+
Sbjct: 135 GFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFE 194

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            + V+   SWNT++ GY +  +   A  +F  M   G+  + V++ ++L++ +  G   +
Sbjct: 195 RMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVE 254

Query: 278 GKKYFDEMQADSVKPT 293
             + F  M+   +  T
Sbjct: 255 TMELFGRMRMRGIGAT 270


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 152/411 (36%), Positives = 242/411 (58%), Gaps = 2/411 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  LF  + E+N+VSWN+M+  + QN    +A+ + ++M      P  V+
Sbjct: 280 MYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVS 339

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +   L ACA    L  G+ IH   +  GL+ ++ + N+L  MY KC  ++ A ++F  + 
Sbjct: 340 VMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQ 399

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS+N +I+G++Q     ++L+ FS+MR   +K D  +++  I+A A L+     K 
Sbjct: 400 SRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKW 459

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHGV +R  L  ++FV  +++D Y + G I +A  IFD +  +   +WN +I GYG  G 
Sbjct: 460 IHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGF 519

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LFE M++  +  + V+++++++ACSH GLVE G K F  M+ + S++ +  HY 
Sbjct: 520 GKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYG 579

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            MVDLLGRAG + +A   I  +PV+P  N++GA+LGAC+I+ NV     AAE LF L P 
Sbjct: 580 AMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPD 639

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
             GY++LL+N+Y  A  W++  +VR  M  +  +K PGCS V+ ++EV  F
Sbjct: 640 DGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSF 690



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 186/351 (52%), Gaps = 5/351 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  +  EA  +F  + E+++VSWN +VA ++QN +   AL++V+ M   N  P+ +T
Sbjct: 179 MYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFIT 238

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VLPA +    +  GKEIH   +R G +  + ++ AL DMYAKCG L  A+ +F+ + 
Sbjct: 239 IVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGML 298

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+N +I  Y Q  +  E++ +F +M   G+K   VS MGA+ ACA+L  +++G+ 
Sbjct: 299 ERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRF 358

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH +++   L  ++ V NS++  Y +   +D A  +F  L  +   SWN +ILG+   G 
Sbjct: 359 IHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGR 418

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+N F  MR   V  D  +Y++++TA +   +    K     +    +         
Sbjct: 419 PIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTA 478

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
           +VD+  + G +  A +LI ++  E     W A++     YG    G  A E
Sbjct: 479 LVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDG---YGTHGFGKAALE 525



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 144/280 (51%), Gaps = 1/280 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           ++ +     EA+ +F  I  K  V ++ M+  FA+     KALQ    M   +  P    
Sbjct: 78  LFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYN 137

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T +L  C     LR GKEIH  +++ G + DLF    L +MYAKC  +N A+ VF+ + 
Sbjct: 138 FTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMP 197

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N ++ GYSQ      +L +   M    +K   ++ +  + A + L  I  GKE
Sbjct: 198 ERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKE 257

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R    + + ++ +++D Y + G ++ A ++FD +  ++  SWN++I  Y     
Sbjct: 258 IHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNEN 317

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
              A+ +F+ M ++GV    VS +  L AC+  G +E+G+
Sbjct: 318 PKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 129/263 (49%), Gaps = 2/263 (0%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           L+  ++I   + + GL  + F    L  ++ + G ++ A  VF  I  +  V Y+ ++ G
Sbjct: 50  LKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKG 109

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           +++ SD  ++L  F  MR   ++  V +F   +  C + A ++ GKEIHG+ ++      
Sbjct: 110 FAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLD 169

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           LF    + + Y +  +++ A K+FD +P +D  SWNT++ GY   G    A+ + ++M E
Sbjct: 170 LFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCE 229

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
           + +    ++ +++L A S   L+  GK+                   +VD+  + G +E 
Sbjct: 230 ENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLET 289

Query: 313 AVKLIKNLPVEPDANIWGALLGA 335
           A +L   + +E +   W +++ A
Sbjct: 290 ARQLFDGM-LERNVVSWNSMIDA 311


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 243/414 (58%), Gaps = 3/414 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +A  +F  I  KN VSW  ++A +         L++ R+M +     N  + +  + AC 
Sbjct: 163 DACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACT 222

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNI 128
                  G+++HA + + G   +L + N++ DMY +C C + A   F  ++ RD +++N 
Sbjct: 223 SIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNT 282

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           LI GY + S+ +ESL +FS M   G   +  +F   ++ACA LA +  G++IHG  IR+ 
Sbjct: 283 LIAGYER-SNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRG 341

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L  +L ++N+++D Y++ G I  ++++F  +  +D  SW  +++GYG  G  + A+ LF+
Sbjct: 342 LDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFD 401

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            M   G+  D V ++AIL+ACSH GLV++G +YF  M  D ++ P +  Y C+VDLLGRA
Sbjct: 402 KMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRA 461

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           G +E+A +LI+++P +PD  +WG  LGAC+ +    LG  AA  +  L+P   G Y++LS
Sbjct: 462 GKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLS 521

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFTPG 421
           N+YA  GKW E +++R+LMK    KK  G SWV+  + V  FVV D + +   G
Sbjct: 522 NIYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGNHVYSFVVGDEVGSKIEG 575



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 201/434 (46%), Gaps = 53/434 (12%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
            EA  LF  + E+++V+W  M+A +        A  +  EM      PN+ T+++VL AC
Sbjct: 60  GEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKAC 119

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL--AQNVF-NISFRDEVS 125
                L  G+ +H   I+ GL+  +++ NAL DMYA C C+++  A  VF  I  ++EVS
Sbjct: 120 KGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATC-CVSMDDACMVFRGIHLKNEVS 178

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           +  LI GY+   D    L +F +M L  ++ +  SF  A+ AC ++ +   G+++H    
Sbjct: 179 WTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVT 238

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
           +    ++L V NSILD Y R      AN+ F  +  +D  +WNTLI GY      ++ + 
Sbjct: 239 KHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSNPTES-LY 297

Query: 246 LFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQADSVKPTE 294
           +F  M  +G   +  ++ +I+ AC+           HG ++ +G    D   A S    +
Sbjct: 298 VFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRG---LDGNLALSNALID 354

Query: 295 MHYAC-----------------------MVDLLGRAGLMEDAVKLIKNL---PVEPDANI 328
           M+  C                       M+   G  G  E+AV+L   +    + PD  +
Sbjct: 355 MYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVV 414

Query: 329 WGALLGACRIYGNVELGAWAAEHL---FMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385
           + A+L AC   G V+ G    + +   + + P     Y  + ++   AGK +EA    EL
Sbjct: 415 FMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQ-EIYGCVVDLLGRAGKVEEA---YEL 470

Query: 386 MKSREAKKNPGCSW 399
           ++S   K +  C W
Sbjct: 471 IESMPFKPDE-CVW 483



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 132/234 (56%), Gaps = 4/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY + S  +EA+  F+ + ++++++WN ++A + ++    ++L +   M      PN  T
Sbjct: 255 MYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSN-PTESLYVFSMMESEGFSPNCFT 313

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            T+++ ACA   FL  G++IH RIIR+GL+ +L L+NAL DMY+KCG +  +  VF  +S
Sbjct: 314 FTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMS 373

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  +++GY       E++ LF +M   G++ D V FM  +SAC++   + +G  
Sbjct: 374 RRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLR 433

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
              + +  + +     +   ++D   R+G+++ A ++ + +P K D   W   +
Sbjct: 434 YFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFL 487


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 146/410 (35%), Positives = 245/410 (59%), Gaps = 2/410 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A  +F  +  KN VSWNAM+  +AQN    +AL L   M         V++
Sbjct: 206 YCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSV 265

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
              L AC     L  G  +H  ++R GL+ ++ + NAL  MY+KC  ++LA +VF+ +  
Sbjct: 266 LAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDR 325

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R +VS+N +I+G +Q     +++ LF+ M+L  +K D  + +  I A A+++   Q + I
Sbjct: 326 RTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWI 385

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG +IR HL   ++V  +++D Y + GR+++A  +F+    +   +WN +I GYG  G  
Sbjct: 386 HGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFG 445

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             A+ LFE M+  G+  +  +++++L+ACSH GLV++G++YF  M+ D  ++P   HY  
Sbjct: 446 KAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGT 505

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGRAG +++A   I+ +P++P  +++GA+LGAC+++ NVEL   +A+ +F L PQ 
Sbjct: 506 MVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQE 565

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
             Y++LL+N+YA A  W + ++VR  M+    +K PG S +Q ++E+  F
Sbjct: 566 GVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTF 615



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 212/424 (50%), Gaps = 52/424 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLV-REMPIHNEFPNSV 59
           MYAK  RPA+A  +F  +  ++ V+WNA+VA +A+N L   A+++V R      E P+S+
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL +VLPACA    L   +E HA  IR GL   + +  A+ D Y KCG +  A+ VF+ +
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             ++ VS+N +I GY+Q  D  E+L+LF+ M   G+    VS + A+ AC  L  + +G 
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H + +R  L +++ V N+++  Y++  R+DLA+ +FD L  +   SWN +ILG    G
Sbjct: 283 RVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNG 342

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HG--------------- 272
             + A+ LF  M+ + V  D  + ++++ A +           HG               
Sbjct: 343 CSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLT 402

Query: 273 ---------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IKNL 320
                    G V   +  F+  +   V    + +  M+   G  G  + AV+L   +K++
Sbjct: 403 ALIDMYAKCGRVNIARILFNSARERHV----ITWNAMIHGYGSHGFGKAAVELFEEMKSI 458

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-----CGYYILLSNMYAEAGK 375
            + P+   + ++L AC   G V+ G    E+   +K  +       +Y  + ++   AGK
Sbjct: 459 GIVPNETTFLSVLSACSHAGLVDEG---REYFTSMKEDYGLEPGMEHYGTMVDLLGRAGK 515

Query: 376 WDEA 379
            DEA
Sbjct: 516 LDEA 519



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 165/361 (45%), Gaps = 45/361 (12%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P   T T++L  CA    L  G+ +HA++  +G++ +     AL +MYAKC     A+ V
Sbjct: 57  PVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRV 116

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAA 173
           F+ +  RD V++N L+ GY++      ++ +   M+   G + D ++ +  + ACAN  A
Sbjct: 117 FDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARA 176

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           +   +E H   IR  L   + VA +ILD Y + G I  A  +FD +P K+S SWN +I G
Sbjct: 177 LAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDG 236

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK------------- 280
           Y   G+   A+ LF  M E+GV    VS +A L AC   G +++G +             
Sbjct: 237 YAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSN 296

Query: 281 ----------------------YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
                                  FDE+     + T++ +  M+    + G  EDAV+L  
Sbjct: 297 VSVMNALITMYSKCKRVDLASHVFDELD----RRTQVSWNAMILGCAQNGCSEDAVRLFT 352

Query: 319 NLPVE---PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL-LSNMYAEAG 374
            + +E   PD+    +++ A     +     W   +   L      Y +  L +MYA+ G
Sbjct: 353 RMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCG 412

Query: 375 K 375
           +
Sbjct: 413 R 413



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 136/262 (51%), Gaps = 7/262 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  R   AS++F  +  +  VSWNAM+   AQN     A++L   M + N  P+S T
Sbjct: 306 MYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFT 365

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L +V+PA A        + IH   IR  L+ D+++  AL DMYAKCG +N+A+ +FN + 
Sbjct: 366 LVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSAR 425

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  +++N +I GY        ++ LF EM+ +G+  +  +F+  +SAC++   + +G+E
Sbjct: 426 ERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGRE 485

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
                   + L   +    +++D   R+G++D A      +P+    S    +LG   L 
Sbjct: 486 YFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLH 545

Query: 239 E-----VDTAINLFEAMREDGV 255
           +      ++A  +FE   ++GV
Sbjct: 546 KNVELAEESAQKIFELGPQEGV 567



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
           SD   +L+ F  M   G    + +F   +  CA    +  G+ +H     + + +    A
Sbjct: 38  SDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAA 97

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR-EDGV 255
            ++ + Y +  R   A ++FD +PV+D  +WN L+ GY   G    A+ +   M+ E+G 
Sbjct: 98  TALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGE 157

Query: 256 GYDPVSYIAIL 266
             D ++ +++L
Sbjct: 158 RPDSITLVSVL 168


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 154/436 (35%), Positives = 245/436 (56%), Gaps = 37/436 (8%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACARGHF 73
           F  ++E++IVSWN+M+A   Q+  + +ALQ    +       P+  +L + L ACA    
Sbjct: 196 FELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEK 255

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------ISFR--- 121
           L  GK+IH  I+R   +    + NAL  MYAK G + +A+ +           I+F    
Sbjct: 256 LSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALL 315

Query: 122 ----------------------DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
                                 D V++  +IVGY Q    ++++ +F  M   G + +  
Sbjct: 316 NGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSF 375

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           +    +SA +++ ++  GK+IH   IR        V N++   Y ++G I+ A K+F+ L
Sbjct: 376 TLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLL 435

Query: 220 PV-KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
              +D+ SW ++I+     G  + AI LFE M   G+  D ++Y+ +L+AC+HGGLVE+G
Sbjct: 436 RQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQG 495

Query: 279 KKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
           + YFD M+    + PT  HYACMVDL GRAGL+++A K ++N+P+EPD   WG+LL +C+
Sbjct: 496 RSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCK 555

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           +Y NV+L   AAE L +++P + G Y  L+N+Y+  GKWD+A+K+R+LMK+R  KK  G 
Sbjct: 556 VYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGL 615

Query: 398 SWVQTRDEVQDFVVND 413
           SWVQ +++   F V D
Sbjct: 616 SWVQIQNKTHVFGVED 631



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 210/495 (42%), Gaps = 117/495 (23%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQ-NRLELKALQLVREMPIHNEFPNSVT 60
           YAK  +  +A  +F  I  ++ VSW  ++  + Q  R E  A+++  +M      P   T
Sbjct: 51  YAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFE-DAIKIFVDMVKDKVLPTQFT 109

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
           LTNVL +CA       GK++H+ +++ GL+  + + N+L +MYAK G L +A+ VF+   
Sbjct: 110 LTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMK 169

Query: 118 -----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                        +S RD VS+N +I G +Q    +E+L  FS 
Sbjct: 170 LRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSS 229

Query: 149 -MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
            ++   +K D  S   A+SACANL  +  GK+IHG  +R        V N+++  Y +SG
Sbjct: 230 ILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSG 289

Query: 208 RIDLANK---------------------------------IFDCLPVKDSASWNTLILGY 234
            +++A +                                 IF+ L   D  +W  +I+GY
Sbjct: 290 GVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGY 349

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS------HG---------------- 272
              G  + AI +F+ M  +G   +  +  A+L+A S      HG                
Sbjct: 350 VQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSP 409

Query: 273 -------------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319
                        G +   +K F+ ++ +      + +  M+  L + GL E+A++L + 
Sbjct: 410 SVGNALTTMYAKAGSINGARKVFNLLRQNR---DTVSWTSMIMALAQHGLGEEAIELFEQ 466

Query: 320 ---LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-----CGYYILLSNMYA 371
              L ++PD   +  +L AC   G VE G     +  ++K  H       +Y  + +++ 
Sbjct: 467 MLTLGIKPDHITYVGVLSACTHGGLVEQG---RSYFDLMKNVHKIDPTLSHYACMVDLFG 523

Query: 372 EAGKWDEASKVRELM 386
            AG   EA K  E M
Sbjct: 524 RAGLLQEAYKFVENM 538



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 130/246 (52%), Gaps = 4/246 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A  +F+++ + ++V+W AM+  + QN L   A+++ + M      PNS TL
Sbjct: 318 YVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTL 377

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI--S 119
             +L A +    L  GK+IHA  IR G      + NALT MYAK G +N A+ VFN+   
Sbjct: 378 AAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQ 437

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  +I+  +Q     E++ LF +M  LG+K D ++++G +SAC +   ++QG+ 
Sbjct: 438 NRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRS 497

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGML 237
              +    H +   L     ++D + R+G +  A K  + +P++ D  +W +L+    + 
Sbjct: 498 YFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVY 557

Query: 238 GEVDTA 243
             VD A
Sbjct: 558 KNVDLA 563



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 119/248 (47%), Gaps = 37/248 (14%)

Query: 84  IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-------------------------- 117
           +++ GL F ++L N L ++YAK G    A ++FN                          
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 118 ------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
                 I  RD VS+  +IVGY+Q     +++ +F +M    +     +    +++CA  
Sbjct: 61  HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
            +   GK++H   ++  LH  + VANS+L+ Y ++G + +A  +FD + +++++SWN +I
Sbjct: 121 GSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI 180

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SV 290
             +   G VD A+  FE + E     D VS+ +++  C+  G   +  ++F  +  D S+
Sbjct: 181 SLHMNCGRVDLALAQFELLSE----RDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSL 236

Query: 291 KPTEMHYA 298
           KP     A
Sbjct: 237 KPDRFSLA 244


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 240/415 (57%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K+    EA  LF  +  +N+  WNA ++N   +    KA+    E       P+ +T
Sbjct: 102 MYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLIT 161

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
               L ACA    L  G+++H  +IR G   D+ + N + D+Y KC  + LA+ VFN + 
Sbjct: 162 FCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMG 221

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+  ++    Q  +  ++  +F   R  G++         ISA A ++ ++ G+ 
Sbjct: 222 RRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRS 281

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + ++  +   +FV ++++D Y + G I+   ++F  +P ++  SWN +I GY   G+
Sbjct: 282 VHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGD 341

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
           VD A+ LFE M+ + V  + V+ I +L+ACS GG V+ G + F+ M+    ++P   HYA
Sbjct: 342 VDMAMTLFEEMQSEAVA-NYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYA 400

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+ D+LGRAG++E A + ++ +P+ P  ++WGALL ACR+YG  ELG  AA++LF L P+
Sbjct: 401 CIADMLGRAGMVERAYEFVQKMPIRPTISVWGALLNACRVYGEPELGKIAADNLFKLDPK 460

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             G ++LLSNM+A AG+WDEA+ VR+ MK    KK  GCSWV  +++V  F   D
Sbjct: 461 DSGNHVLLSNMFAAAGRWDEATLVRKEMKDVGIKKGAGCSWVTAKNKVHVFQAKD 515



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 160/345 (46%), Gaps = 2/345 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K   P  A  L      + +V+W A+++   QN     AL    +M   N  PN  T
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFT 60

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
                 A         GK+IHA  ++ G   D F+  +  DMY+K G    AQ +F+ + 
Sbjct: 61  FPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMP 120

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+   +N  I          +++  F E R +G + D+++F   ++ACA+   +  G++
Sbjct: 121 PRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQ 180

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+ IR      + VAN I+D Y +   ++LA  +F+ +  ++S SW T++       E
Sbjct: 181 LHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDE 240

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A  +F   R++G+        ++++A +    +E G+          V+      + 
Sbjct: 241 KEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSA 300

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344
           +VD+ G+ G +ED  ++   +P E +   W A++      G+V++
Sbjct: 301 LVDMYGKCGSIEDCEQVFHEMP-ERNLVSWNAMISGYAHQGDVDM 344


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 168/485 (34%), Positives = 258/485 (53%), Gaps = 76/485 (15%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  R  +A  +F  +A ++ VSWN MV+ +A N     A ++ R M      PN VT
Sbjct: 179 MYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVT 238

Query: 61  LTNVLPACAR-GHFLRP----------------------------------GKEIHARII 85
            T++L + AR G  +                                    GK IH  ++
Sbjct: 239 WTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVV 298

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDC----- 139
           + G    LF+ N+L  +Y K G +N A+ +F  I  ++ VS+N LI  Y+    C     
Sbjct: 299 KGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFA 358

Query: 140 ----------------------------------SESLSLFSEMRLLGMKHDVVSFMGAI 165
                                              E+L LF  M+L  +K + V+    +
Sbjct: 359 IFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVL 418

Query: 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
           S CA LAA+  G+EIHG  +R  +  ++ V N +++ YT+SG     N +F+ +  KD  
Sbjct: 419 SVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLI 478

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           SWNT++ GYG+ G  + AI  F+ M +DG   D V+++A+L+ACSH GLV +G++ FD+M
Sbjct: 479 SWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKM 538

Query: 286 QAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344
             +  V+P   HYACMVDLLGRAGL+++A K++K++PVEP+A +WGALL +CR++ N E+
Sbjct: 539 IKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEV 598

Query: 345 GAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRD 404
               A  +F L  +  G Y+LLSN+YA +G+W++++KVR   K++  KK PG SW+Q + 
Sbjct: 599 AEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKK 658

Query: 405 EVQDF 409
           +V  F
Sbjct: 659 KVYMF 663



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 143/323 (44%), Gaps = 42/323 (13%)

Query: 22  NIVSWNAMV-ANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80
           N++ WN+++ AN A    E +AL++   M       +  T   V+ ACA     +  + +
Sbjct: 99  NLLLWNSILRANVAHGYCE-EALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSV 157

Query: 81  HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDC 139
           H  ++  G  ++L + N L  MY K G ++ A+ VF  ++ R  VS+N ++ GY+   DC
Sbjct: 158 HGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDC 217

Query: 140 S-----------------------------------ESLSLFSEMRLLGMKHDVVSFMGA 164
                                               E++ LF  MR+ G+     +    
Sbjct: 218 HGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVV 277

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           +S   +LAA  +GK IHG  ++     +LFV NS++  Y + G ++ A  +F  +  K+ 
Sbjct: 278 LSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNI 337

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDG----VGYDPVSYIAILTACSHGGLVEKGKK 280
            SWN LI  Y  LG  D A  +F  + +      V  + VS+ A++   +  G  E+  +
Sbjct: 338 VSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALE 397

Query: 281 YFDEMQADSVKPTEMHYACMVDL 303
            F  MQ   VK   +  A ++ +
Sbjct: 398 LFRRMQLAKVKANSVTIASVLSV 420



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 128/256 (50%), Gaps = 10/256 (3%)

Query: 45  LVREMPIHNEFPNSVTL---TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101
           L R + I +  PN+  L    ++L  C++ H     ++IH++II  G +   FL   +  
Sbjct: 18  LSRSISIIHHQPNNDVLDFFNDLLQQCSKSHL---SQQIHSQIIVTGSHRSAFLAARVVS 74

Query: 102 MYAKCGCLNLAQNVFNIS----FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157
           +YA  G ++ AQ VF +S    F + + +N ++        C E+L ++  MR LG+  D
Sbjct: 75  VYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSAD 134

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
             +F   I ACA + + K  + +HG  +      +L V N ++  Y + GR+D A K+F+
Sbjct: 135 GFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFE 194

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            + V+   SWNT++ GY +  +   A  +F  M   G+  + V++ ++L++ +  G   +
Sbjct: 195 RMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVE 254

Query: 278 GKKYFDEMQADSVKPT 293
             + F  M+   +  T
Sbjct: 255 TMELFGRMRMRGIGAT 270


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 243/414 (58%), Gaps = 3/414 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +A  +F  I  KN VSW  ++A +         L++ R+M +     N  + +  + AC 
Sbjct: 147 DACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACT 206

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNI 128
                  G+++HA + + G   +L + N++ DMY +C C + A   F  ++ RD +++N 
Sbjct: 207 SIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNT 266

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           LI GY + S+ +ESL +FS M   G   +  +F   ++ACA LA +  G++IHG  IR+ 
Sbjct: 267 LIAGYER-SNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRG 325

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L  +L ++N+++D Y++ G I  ++++F  +  +D  SW  +++GYG  G  + A+ LF+
Sbjct: 326 LDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFD 385

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            M   G+  D V ++AIL+ACSH GLV++G +YF  M  D ++ P +  Y C+VDLLGRA
Sbjct: 386 KMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRA 445

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           G +E+A +LI+++P +PD  +WG  LGAC+ +    LG  AA  +  L+P   G Y++LS
Sbjct: 446 GKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLS 505

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFTPG 421
           N+YA  GKW E +++R+LMK    KK  G SWV+  + V  FVV D + +   G
Sbjct: 506 NIYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGNHVYSFVVGDEVGSKIEG 559



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 132/234 (56%), Gaps = 4/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY + S  +EA+  F+ + ++++++WN ++A + ++    ++L +   M      PN  T
Sbjct: 239 MYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSN-PTESLYVFSMMESEGFSPNCFT 297

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            T+++ ACA   FL  G++IH RIIR+GL+ +L L+NAL DMY+KCG +  +  VF  +S
Sbjct: 298 FTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMS 357

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  +++GY       E++ LF +M   G++ D V FM  +SAC++   + +G  
Sbjct: 358 RRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLR 417

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
              + +  + +     +   ++D   R+G+++ A ++ + +P K D   W   +
Sbjct: 418 YFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFL 471



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 196/432 (45%), Gaps = 53/432 (12%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A+ L  +   K ++    M+A +        A  +  EM      PN+ T+++VL AC  
Sbjct: 46  ATTLIKSYFGKGLIGEALMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKG 105

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL--AQNVF-NISFRDEVSYN 127
              L  G+ +H   I+ GL+  +++ NAL DMYA C C+++  A  VF  I  ++EVS+ 
Sbjct: 106 MKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATC-CVSMDDACMVFRGIHLKNEVSWT 164

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            LI GY+   D    L +F +M L  ++ +  SF  A+ AC ++ +   G+++H    + 
Sbjct: 165 TLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKH 224

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
              ++L V NSILD Y R      AN+ F  +  +D  +WNTLI GY      ++ + +F
Sbjct: 225 GFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSNPTES-LYVF 283

Query: 248 EAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQADSVKPTEMH 296
             M  +G   +  ++ +I+ AC+           HG ++ +G    D   A S    +M+
Sbjct: 284 SMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRG---LDGNLALSNALIDMY 340

Query: 297 YAC-----------------------MVDLLGRAGLMEDAVKLIKNL---PVEPDANIWG 330
             C                       M+   G  G  E+AV+L   +    + PD  ++ 
Sbjct: 341 SKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFM 400

Query: 331 ALLGACRIYGNVELGAWAAEHL---FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           A+L AC   G V+ G    + +   + + P     Y  + ++   AGK +EA    EL++
Sbjct: 401 AILSACSHAGLVDEGLRYFKLMVGDYNISPDQ-EIYGCVVDLLGRAGKVEEA---YELIE 456

Query: 388 SREAKKNPGCSW 399
           S   K +  C W
Sbjct: 457 SMPFKPDE-CVW 467


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 140/416 (33%), Positives = 239/416 (57%), Gaps = 2/416 (0%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MY +     +A  +FH++  +N++SW AM+  FA    + KA +L  +M      P   T
Sbjct: 631  MYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKST 690

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +++L AC     L  GK++ A I+  G   D  + NAL   Y+K G +  A+ VF+ + 
Sbjct: 691  FSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMP 750

Query: 120  FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             RD +S+N +I GY+Q      +L    +M+  G+  +  SF+  ++AC++ +A+++GK 
Sbjct: 751  NRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKR 810

Query: 180  IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            +H   +++ +   + V  +++  Y + G ++ A ++FD    K+  +WN +I  Y   G 
Sbjct: 811  VHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGL 870

Query: 240  VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
               A++ F  M ++G+  D  ++ +IL+AC+H GLV +G + F  +++   + PT  HY 
Sbjct: 871  ASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYG 930

Query: 299  CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            C+V LLGRAG  ++A  LI  +P  PDA +W  LLGACRI+GNV L   AA +   L  +
Sbjct: 931  CLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNAR 990

Query: 359  HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            +   Y+LLSN+YA AG+WD+ +K+R +M+ R  +K PG SW++  + + +F+  DR
Sbjct: 991  NPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADR 1046



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 178/359 (49%), Gaps = 5/359 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+      A  LF+ + +++++SWNA++A +A+     +A++L ++M      P  VT
Sbjct: 429 MYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVT 488

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L AC        GK IH  I+R G+  +  L NAL +MY +CG +  AQNVF    
Sbjct: 489 FLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTR 548

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+N +I G++Q      +  LF EM+  G++ D ++F   +  C N  A++ G++
Sbjct: 549 ARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQ 608

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH + I   L   + + N++++ Y R G +  A ++F  L  ++  SW  +I G+   GE
Sbjct: 609 IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGE 668

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A  LF  M+ DG      ++ +IL AC     +++GKK    +     +        
Sbjct: 669 DRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNA 728

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           ++    ++G M DA K+   +P   D   W  ++     Y    LG  A +  + ++ Q
Sbjct: 729 LISAYSKSGSMTDARKVFDKMP-NRDIMSWNKMIAG---YAQNGLGGTALQFAYQMQEQ 783



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 178/336 (52%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ +    A A       A++++V +NA++A  AQ+    +A +   +M       N  T
Sbjct: 328 MFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTT 387

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL AC+    L  G+ IH+ I   G + D+ + N+L  MYA+CG L  A+ +FN + 
Sbjct: 388 YLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMP 447

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+N +I GY++  D  E++ L+ +M+  G+K   V+F+  +SAC N +A   GK 
Sbjct: 448 KRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKM 507

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +R  + ++  +AN++++ Y R G I  A  +F+    +D  SWN++I G+   G 
Sbjct: 508 IHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGS 567

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A  LF  M+++G+  D +++ ++L  C +   +E G++    +    ++        
Sbjct: 568 YEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNA 627

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++++  R G ++DA ++  +L    +   W A++G 
Sbjct: 628 LINMYIRCGSLQDAYEVFHSLR-HRNVMSWTAMIGG 662



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 164/336 (48%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    ++A  +F  +  ++++SWN++++ +AQ   + KA QL  EM      P+ +T
Sbjct: 126 MYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKIT 185

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L AC     L  GK+IH++II  G   D  + N+L +MY KC  L  A+ VF+ I 
Sbjct: 186 YISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIY 245

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VSYN ++  Y+Q +   E + LF +M   G+  D V+++  + A    + + +GK 
Sbjct: 246 RRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKR 305

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH + + + L++ + V  ++   + R G +  A +  +    +D   +N LI      G 
Sbjct: 306 IHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGH 365

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A   +  MR DGV  +  +Y+++L ACS    +  G+     +              
Sbjct: 366 YEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNS 425

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++ +  R G +  A +L   +P + D   W A++  
Sbjct: 426 LISMYARCGDLPRARELFNTMP-KRDLISWNAIIAG 460



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 142/288 (49%), Gaps = 2/288 (0%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N     +++  C R   L   K IHA+++  G+  D+FL+N L +MY KC  ++ A  VF
Sbjct: 81  NRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVF 140

Query: 117 -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
             +  RD +S+N LI  Y+Q     ++  LF EM+  G     ++++  ++AC + A ++
Sbjct: 141 LKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELE 200

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK+IH   I         V NS+L+ Y +   +  A ++F  +  +D  S+NT++  Y 
Sbjct: 201 YGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYA 260

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
               V+  I LF  M  +G+  D V+YI +L A +   ++++GK+       + +     
Sbjct: 261 QKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIR 320

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
               +  +  R G +  A + ++    + D  ++ AL+ A   +G+ E
Sbjct: 321 VGTALATMFVRCGDVAGAKQALEAF-ADRDVVVYNALIAALAQHGHYE 367


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 144/416 (34%), Positives = 248/416 (59%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +     +A  +   + E+++VSW  M++ ++Q    ++AL L  +M      PN  T
Sbjct: 54  MYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYT 113

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL +C+    +  GK++H+ +++      +F+ ++L DMYAK   +  A+ VF+ + 
Sbjct: 114 LATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP 173

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS   +I GY+Q     E+L LF ++   GM+ + V+F   ++A + LA++  GK+
Sbjct: 174 ERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQ 233

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + +RK L   + + NS++D Y++ G++  + ++FD +  +   SWN +++GYG  G 
Sbjct: 234 VHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGL 293

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
               I+LF+ + ++ V  D V+ +A+L+ CSHGGLV++G   FD + +  S      HY 
Sbjct: 294 GHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYG 352

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C++DLLGR+G +E A+ LI+N+P E   +IWG+LLGACR++ NV +G   A+ L  ++P+
Sbjct: 353 CIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPE 412

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G Y++LSN+YA AG W +  KVR+LM  +   K PG SW+     +  F  ++R
Sbjct: 413 NAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSER 468



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 175/364 (48%), Gaps = 48/364 (13%)

Query: 65  LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDE 123
           + AC     L  G+++HAR+I       +FL   L  MY +CG L+ A+NV + +  R  
Sbjct: 17  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76

Query: 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGV 183
           VS+  +I GYSQT    E+L LF +M   G   +  +    +++C+   +I QGK++H +
Sbjct: 77  VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 136

Query: 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
            ++ +  +H+FV +S+LD Y +S  I  A ++FD LP +D  S   +I GY   G  + A
Sbjct: 137 LVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEA 196

Query: 244 INLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEK--------------- 277
           ++LF  +  +G+  + V++  ++TA S           H  ++ K               
Sbjct: 197 LDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDM 256

Query: 278 ---------GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDA 326
                     ++ FD M   SV    + +  M+   GR GL  + + L K+L   V+PD+
Sbjct: 257 YSKCGKLLYSRRVFDNMLERSV----VSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDS 312

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQ----HCGYYILLSNMYAEAGKWDEASKV 382
               A+L  C   G V+ G    + +  +K Q    H G+Y  + ++   +G+ ++A  +
Sbjct: 313 VTLLAVLSGCSHGGLVDEGLDIFDTV--VKEQSALLHTGHYGCIIDLLGRSGRLEKALNL 370

Query: 383 RELM 386
            E M
Sbjct: 371 IENM 374



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 79/173 (45%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M L G       +  AI+AC    A+ +G+++H   I       +F+   ++  Y R G 
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +D A  + D +P +   SW T+I GY        A++LF  M   G   +  +   +LT+
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
           CS    + +GK+    +   + +      + ++D+  ++  +++A ++   LP
Sbjct: 121 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP 173


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 150/405 (37%), Positives = 237/405 (58%), Gaps = 8/405 (1%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP---IHNEFPNSVTLTNVLPACAR 70
           LF  + E++ VS+N ++A +A N+     L+L REM       +     T+ +V  +   
Sbjct: 293 LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPD 352

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
            H    GK+IHA+++  GL  +  L NAL DMY+KCG L+ A++ F N S +  +S+  L
Sbjct: 353 VHI---GKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTAL 409

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY Q     E+L LFS+MR  G++ D  +F   I A ++LA I  G+++H   IR   
Sbjct: 410 ITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGY 469

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            + +F  + ++D Y + G +D A + FD +P ++S SWN +I  Y   GE   AI +FE 
Sbjct: 470 KSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEG 529

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAG 308
           M   G   D V+++++L ACSH GL ++  KYF  M+   S+ P + HYAC++D LGR G
Sbjct: 530 MLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVG 589

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
                 K++  +P + D  IW ++L +CRI+GN EL   AA+ LF ++P     Y++LSN
Sbjct: 590 CFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSN 649

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +YA AG+W++A+ V+++M+ R  +K  G SWV+ + ++  F  ND
Sbjct: 650 IYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASND 694



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 159/335 (47%), Gaps = 11/335 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+ S     A +LF +   +N  +W  M+   A       AL L R M      P+ VT+
Sbjct: 84  YSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTV 143

Query: 62  TNVL--PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T VL  P C           +H   I+ GL+  +F+ N L D Y K G L  A+ VF  +
Sbjct: 144 TTVLNLPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEM 196

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D V+YN +++G S+    +++L LF+ MR  G+     +F   ++  A +A +  G 
Sbjct: 197 HDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGH 256

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++H + +R     ++FV NS+LDFY++   +D   ++FD +P +D+ S+N +I  Y    
Sbjct: 257 QVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQ 316

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
              T + LF  M++ G     + Y  +L+       V  GK+   ++    +   ++   
Sbjct: 317 CAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGN 376

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            ++D+  + G+++ A     N   E  A  W AL+
Sbjct: 377 ALIDMYSKCGMLDAAKSNFSNRS-EKSAISWTALI 410



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 144/315 (45%), Gaps = 37/315 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A   F N +EK+ +SW A++  + QN    +ALQL  +M      P+  T
Sbjct: 381 MYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRAT 440

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++++ A +    +  G+++H+ +IR G    +F  + L DMYAKCGCL+ A   F+ + 
Sbjct: 441 FSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP 500

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ +S+N +I  Y+   +   ++ +F  M   G   D V+F+  ++AC           
Sbjct: 501 ERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAAC----------- 549

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
                      +H  +A+  + ++       L    +   P K+   +  +I     LG 
Sbjct: 550 -----------SHNGLADECMKYF------HLMKHQYSISPWKE--HYACVI---DTLGR 587

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE-MHYA 298
           V     + + + E     DP+ + +IL +C   G  E  +   D++    ++PT+   Y 
Sbjct: 588 VGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFG--MEPTDATPYV 645

Query: 299 CMVDLLGRAGLMEDA 313
            + ++  RAG  EDA
Sbjct: 646 ILSNIYARAGQWEDA 660



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%)

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
           H ++F  N IL  Y+ SG +  A  +F   P +++ +W  ++  +   G    A++LF A
Sbjct: 71  HKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRA 130

Query: 250 MREDGVGYDPVSYIAIL 266
           M  +GV  D V+   +L
Sbjct: 131 MLGEGVIPDRVTVTTVL 147


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 149/416 (35%), Positives = 242/416 (58%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  I ++++V WNA+++  +      +AL L   M       N  T
Sbjct: 347 MYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTT 406

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
           L  VL + A    +   +++HA   + G   D  + N L D Y KC CLN A  VF    
Sbjct: 407 LAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHG 466

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D +++  +I   SQ     +++ LF EM   G+  D       ++ACA+L+A +QGK+
Sbjct: 467 SYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I++   + +F  N+++  Y + G I+ A+  F  LP K   SW+ +I G    G 
Sbjct: 527 VHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGH 586

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+++F  M ++ +  + ++  ++L AC+H GLV++ K+YF+ M +   ++ TE HYA
Sbjct: 587 GKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYA 646

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLGRAG ++DA++L+ ++P + +A +WGALL A R++ + ELG  AAE LF+L+P+
Sbjct: 647 CMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPE 706

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G ++LL+N YA AG WD+ +KVR+LMK  + KK P  SWV+ +D+V  F+V D+
Sbjct: 707 KSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDK 762



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 164/338 (48%), Gaps = 6/338 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            Y+K   P  A  +F  I +   VSW+++V  ++ N +   AL   R M   +   N   
Sbjct: 46  FYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFV 105

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L  VL       F   G ++HA  +  GL  D+F+ NAL  MY   G ++ A+ VF+ + 
Sbjct: 106 LPVVLKCAPDAGF---GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAG 162

Query: 121 --RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ VS+N L+  Y +   CS ++ +F EM   G++ +   F   ++AC     ++ G+
Sbjct: 163 CERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGR 222

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++H + IR      +F AN+++D Y++ G I +A  +F  +P  D  SWN  I G  + G
Sbjct: 223 KVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHG 282

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
               A+ L   M+  G+  +  +  +IL AC+  G    G++    M   +         
Sbjct: 283 HDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAF 342

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
            +VD+  + GL++DA K+   +P + D  +W AL+  C
Sbjct: 343 GLVDMYAKHGLLDDAKKVFDWIP-QRDLVLWNALISGC 379



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 173/388 (44%), Gaps = 36/388 (9%)

Query: 1   MYAKSSRPAEASYLFHNIA-EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MY       EA  +F     E+N VSWN +++ + +N     A+++  EM      PN  
Sbjct: 144 MYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEF 203

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
             + V+ AC     L  G+++HA +IR G + D+F  NAL DMY+K G + +A  VF  +
Sbjct: 204 GFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKV 263

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              D VS+N  I G         +L L  +M+  G+  +V +    + ACA   A   G+
Sbjct: 264 PETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGR 323

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IHG  ++ +  +  ++A  ++D Y + G +D A K+FD +P +D   WN LI G     
Sbjct: 324 QIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGA 383

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSH----------GGLVEKGKKYFDEMQAD 288
           +   A++LF  MR++G   +  +  A+L + +             L EK     D    +
Sbjct: 384 QHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVN 443

Query: 289 SV--------------KPTEMH-------YACMVDLLGRAGLMEDAVKLIKNL---PVEP 324
            +              +  E H       +  M+  L +    EDA+KL   +    ++P
Sbjct: 444 GLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDP 503

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHL 352
           D  +  +LL AC      E G     HL
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHL 531


>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
 gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
          Length = 577

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 147/419 (35%), Positives = 244/419 (58%), Gaps = 8/419 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K    +    +F  + E+N+++W A+++   Q+ L   +L+L  EM      PNS+T 
Sbjct: 104 YFKCGFSSSGMQVFDEMLERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTY 163

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR 121
            + L AC+    LR G +IH R+ + GL  D  + +AL DMY+KCG +     +F  + +
Sbjct: 164 LSSLMACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQ 223

Query: 122 -DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD---VVSFMGAISACANLAAIKQG 177
            D+VS  I++ G++Q     E++  F +M   G + D   V + +G   A  +L     G
Sbjct: 224 LDKVSMTIILAGFAQNGFEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGL---G 280

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           ++IH + I++   ++ FV N +++ Y++ G ++ + K+F  +P  +S SWN++I  +   
Sbjct: 281 QQIHSLVIKRSFGSNPFVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARH 340

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMH 296
           G+   A+ L++ MR  GV    V+++++L ACSH GLVEKG ++   M +   + P   H
Sbjct: 341 GDGSRALQLYKEMRLKGVEPTDVTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEH 400

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YAC+VD+LGRAGL+ +A   I+ LP++PD  +W ALLGAC I+G+ E+G +AAEHL +  
Sbjct: 401 YACVVDMLGRAGLLNEAKTFIEGLPIKPDVLVWQALLGACGIHGDPEMGKYAAEHLILSA 460

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           P+    YILL+N+Y+  G+W E +K  + MK     K  G SW++  + +  FVV D+M
Sbjct: 461 PEKPSPYILLANIYSSKGRWKERAKTIKRMKEMCVAKETGISWIEIENNLHSFVVEDKM 519



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 159/343 (46%), Gaps = 3/343 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSV 59
           MYAK+    +A+ LF  +  ++ VSWN M++ F ++          ++M     +  +  
Sbjct: 1   MYAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQA 60

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           TLT +L AC R       K +H   +  G   ++ + NAL   Y KCG  +    VF+  
Sbjct: 61  TLTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEM 120

Query: 120 F-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ +++  +I G  Q+    +SL LF EM    ++ + ++++ ++ AC+ L A+++G 
Sbjct: 121 LERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREGC 180

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IHG   +  L +   V ++++D Y++ G +    +IF+     D  S   ++ G+   G
Sbjct: 181 QIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNG 240

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             + A+  F  M E G   D     A+L        +  G++    +   S         
Sbjct: 241 FEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGN 300

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
            ++++  + G +ED+ K+   +P     + W +++ A   +G+
Sbjct: 301 GLINMYSKCGDLEDSTKVFSRMPCMNSVS-WNSMIAAFARHGD 342



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 23/126 (18%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +++ +F  +   N VSWN+M+A FA++    +ALQL +EM +    P  VT
Sbjct: 305 MYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPTDVT 364

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNA------------LTDMYAKCGC 108
             ++L AC+           H  ++ KG+ F   +T              + DM  + G 
Sbjct: 365 FLSLLHACS-----------HVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGL 413

Query: 109 LNLAQN 114
           LN A+ 
Sbjct: 414 LNEAKT 419


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 144/416 (34%), Positives = 248/416 (59%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +     +A  +   + E+++VSW  M++ ++Q    ++AL L  +M      PN  T
Sbjct: 86  MYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYT 145

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL +C+    +  GK++H+ +++      +F+ ++L DMYAK   +  A+ VF+ + 
Sbjct: 146 LATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP 205

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS   +I GY+Q     E+L LF ++   GM+ + V+F   ++A + LA++  GK+
Sbjct: 206 ERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQ 265

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + +RK L   + + NS++D Y++ G++  + ++FD +  +   SWN +++GYG  G 
Sbjct: 266 VHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGL 325

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
               I+LF+ + ++ V  D V+ +A+L+ CSHGGLV++G   FD + +  S      HY 
Sbjct: 326 GHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYG 384

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C++DLLGR+G +E A+ LI+N+P E   +IWG+LLGACR++ NV +G   A+ L  ++P+
Sbjct: 385 CIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPE 444

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G Y++LSN+YA AG W +  KVR+LM  +   K PG SW+     +  F  ++R
Sbjct: 445 NAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSER 500



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 175/364 (48%), Gaps = 48/364 (13%)

Query: 65  LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDE 123
           + AC     L  G+++HAR+I       +FL   L  MY +CG L+ A+NV + +  R  
Sbjct: 49  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 108

Query: 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGV 183
           VS+  +I GYSQT    E+L LF +M   G   +  +    +++C+   +I QGK++H +
Sbjct: 109 VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 168

Query: 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
            ++ +  +H+FV +S+LD Y +S  I  A ++FD LP +D  S   +I GY   G  + A
Sbjct: 169 LVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEA 228

Query: 244 INLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEK--------------- 277
           ++LF  +  +G+  + V++  ++TA S           H  ++ K               
Sbjct: 229 LDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDM 288

Query: 278 ---------GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDA 326
                     ++ FD M   SV    + +  M+   GR GL  + + L K+L   V+PD+
Sbjct: 289 YSKCGKLLYSRRVFDNMLERSV----VSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDS 344

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQ----HCGYYILLSNMYAEAGKWDEASKV 382
               A+L  C   G V+ G    + +  +K Q    H G+Y  + ++   +G+ ++A  +
Sbjct: 345 VTLLAVLSGCSHGGLVDEGLDIFDTV--VKEQSALLHTGHYGCIIDLLGRSGRLEKALNL 402

Query: 383 RELM 386
            E M
Sbjct: 403 IENM 406



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%)

Query: 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
           S M L G       +  AI+AC    A+ +G+++H   I       +F+   ++  Y R 
Sbjct: 31  SGMALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRC 90

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           G +D A  + D +P +   SW T+I GY        A++LF  M   G   +  +   +L
Sbjct: 91  GALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVL 150

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
           T+CS    + +GK+    +   + +      + ++D+  ++  +++A ++   LP
Sbjct: 151 TSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP 205


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 153/402 (38%), Positives = 234/402 (58%), Gaps = 6/402 (1%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + E+N+VSW++MV  +A N    + L L   M      PN  ++ N +    R H 
Sbjct: 157 VFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAMACIHREH- 215

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVG 132
                +    +I  GL+ D  + NA   MYA+CG +++A+  F  I  +D V++  +I  
Sbjct: 216 --EADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEA 273

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y Q      +L LF +M+LLG+  D V+ +  I A +NLA+ +  + +HGV  R     H
Sbjct: 274 YVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNH 333

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           + +  +++D Y + G ++ A K FD +  ++  SW+T+I GYGM G    A+ LF+ M+ 
Sbjct: 334 IALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQMKA 393

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLME 311
             +  D ++++ +L+ACSHGGL+ +G + F  M  D  V P   HYACMVDLLGRAG + 
Sbjct: 394 S-IKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLS 452

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371
           +A   I+ +P+ PDA +WGALLGACRI+ N+E    AA HLF L  ++ G YILLSN+YA
Sbjct: 453 EAQAFIERMPITPDAGVWGALLGACRIHSNLETAETAARHLFNLDAENPGRYILLSNIYA 512

Query: 372 EAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            +GK  EA  +R LMKSR  +K  G + ++ +++V  FV  D
Sbjct: 513 SSGKRKEADDIRALMKSRGVRKTVGHTIIEIKNKVYTFVAGD 554



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 128/252 (50%), Gaps = 16/252 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+  R   A   F+ I +K++V+W +M+  + Q  L + AL+L ++M +    P+SVT
Sbjct: 242 MYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVT 301

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +++ A +     +  + +H  I R      + L  A+ D+Y KCG L  A+  F+ +S
Sbjct: 302 LLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMS 361

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ +S++ +I GY       E+L LF +M+   +K D ++F+  +SAC++   I +G E
Sbjct: 362 ARNLISWSTMISGYGMHGHGREALCLFDQMK-ASIKPDHIAFVMVLSACSHGGLIAEGWE 420

Query: 180 I-------HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
                    GVT R   +        ++D   R+GR+  A    + +P+  D+  W  L+
Sbjct: 421 CFKAMNRDFGVTPRTEHYA------CMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALL 474

Query: 232 LGYGMLGEVDTA 243
               +   ++TA
Sbjct: 475 GACRIHSNLETA 486



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/427 (23%), Positives = 176/427 (41%), Gaps = 51/427 (11%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA     + A  LF      N+  WN ++  F+       +L+L   M        + T 
Sbjct: 44  YASLGSISHAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTF 103

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
             +L AC        G   HA ++  G   D+F+ N+L  MY + GC + ++ VF  +  
Sbjct: 104 PFLLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPE 163

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS++ ++  Y+      E L LF  M   G+  +  S + A+ AC +     +  + 
Sbjct: 164 RNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAM-ACIHRE--HEADDF 220

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
             V I   L +   V N+ +  Y R GRID+A + F  +  KD  +W ++I  Y      
Sbjct: 221 CRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLP 280

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACS-----------HG----------------- 272
             A+ LF+ M+  G+  D V+ ++++ A S           HG                 
Sbjct: 281 INALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAV 340

Query: 273 -------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVE 323
                  G +E  +K FD M A ++    + ++ M+   G  G   +A+ L   +   ++
Sbjct: 341 IDLYVKCGNLEYARKCFDRMSARNL----ISWSTMISGYGMHGHGREALCLFDQMKASIK 396

Query: 324 PDANIWGALLGACRIYGNVELGAW----AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA 379
           PD   +  +L AC  +G +    W    A    F + P+   +Y  + ++   AG+  EA
Sbjct: 397 PDHIAFVMVLSACS-HGGLIAEGWECFKAMNRDFGVTPR-TEHYACMVDLLGRAGRLSEA 454

Query: 380 SKVRELM 386
               E M
Sbjct: 455 QAFIERM 461



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 4/195 (2%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILIVGYSQT 136
           K +HA I++  L+    L  +L   YA  G ++ A  +F+ S    V  +N +I  +S T
Sbjct: 21  KSLHASILKSHLH--PHLCTSLIAQYASLGSISHAYALFSTSHSSNVFLWNHIIRAFSNT 78

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
                SL L+S M  LG++    +F   + AC  LA  + G   H   +     + +FVA
Sbjct: 79  PHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHAHVVVFGYESDVFVA 138

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           NS++  Y R G  D + ++F+ +P ++  SW++++  Y   G  +  + LF  M  +G+ 
Sbjct: 139 NSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIA 198

Query: 257 YDPVSYIAILTACSH 271
            +  S +  + AC H
Sbjct: 199 PNRGSIVNAM-ACIH 212


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 146/410 (35%), Positives = 245/410 (59%), Gaps = 2/410 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A  +F  +  KN VSWNAM+  +AQN    +AL L   M         V++
Sbjct: 206 YCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSV 265

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
              L AC     L  G  +H  ++R GL+ ++ + NAL  MY+KC  ++LA +VF+ +  
Sbjct: 266 LAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDR 325

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R +VS+N +I+G +Q     +++ LF+ M+L  +K D  + +  I A A+++   Q + I
Sbjct: 326 RTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWI 385

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG +IR HL   ++V  +++D Y + GR+++A  +F+    +   +WN +I GYG  G  
Sbjct: 386 HGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFG 445

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             A+ LFE M+  G+  +  +++++L+ACSH GLV++G++YF  M+ D  ++P   HY  
Sbjct: 446 KAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGT 505

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGRAG +++A   I+ +P++P  +++GA+LGAC+++ NVEL   +A+ +F L PQ 
Sbjct: 506 MVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQE 565

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
             Y++LL+N+YA A  W + ++VR  M+    +K PG S +Q ++E+  F
Sbjct: 566 GVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTF 615



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 212/424 (50%), Gaps = 52/424 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLV-REMPIHNEFPNSV 59
           MYAK  RPA+A  +F  +  ++ V+WNA+VA +A+N L   A+++V R      E P+S+
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL +VLPACA    L   +E HA  IR GL   + +  A+ D Y KCG +  A+ VF+ +
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             ++ VS+N +I GY+Q  D  E+L+LF+ M   G+    VS + A+ AC  L  + +G 
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H + +R  L +++ V N+++  Y++  R+DLA+ +FD L  +   SWN +ILG    G
Sbjct: 283 RVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNG 342

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HG--------------- 272
             + A+ LF  M+ + V  D  + ++++ A +           HG               
Sbjct: 343 CSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLT 402

Query: 273 ---------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IKNL 320
                    G V   +  F+  +   V    + +  M+   G  G  + AV+L   +K++
Sbjct: 403 ALIDMYAKCGRVNIARILFNSARERHV----ITWNAMIHGYGSHGFGKAAVELFEEMKSI 458

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-----CGYYILLSNMYAEAGK 375
            + P+   + ++L AC   G V+ G    E+   +K  +       +Y  + ++   AGK
Sbjct: 459 GIVPNETTFLSVLSACSHAGLVDEG---REYFTSMKEDYGLEPGMEHYGTMVDLLGRAGK 515

Query: 376 WDEA 379
            DEA
Sbjct: 516 LDEA 519



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 165/361 (45%), Gaps = 45/361 (12%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P   T T++L  CA    L  G+ +HA++  +G++ +     AL +MYAKC     A+ V
Sbjct: 57  PVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRV 116

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAA 173
           F+ +  RD V++N L+ GY++      ++ +   M+   G + D ++ +  + ACAN  A
Sbjct: 117 FDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARA 176

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           +   +E H   IR  L   + VA +ILD Y + G I  A  +FD +P K+S SWN +I G
Sbjct: 177 LAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDG 236

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK------------- 280
           Y   G+   A+ LF  M E+GV    VS +A L AC   G +++G +             
Sbjct: 237 YAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSN 296

Query: 281 ----------------------YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
                                  FDE+     + T++ +  M+    + G  EDAV+L  
Sbjct: 297 VSVMNALITMYSKCKRVDLASHVFDELD----RRTQVSWNAMILGCAQNGCSEDAVRLFT 352

Query: 319 NLPVE---PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL-LSNMYAEAG 374
            + +E   PD+    +++ A     +     W   +   L      Y +  L +MYA+ G
Sbjct: 353 RMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCG 412

Query: 375 K 375
           +
Sbjct: 413 R 413



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 136/262 (51%), Gaps = 7/262 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  R   AS++F  +  +  VSWNAM+   AQN     A++L   M + N  P+S T
Sbjct: 306 MYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFT 365

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L +V+PA A        + IH   IR  L+ D+++  AL DMYAKCG +N+A+ +FN + 
Sbjct: 366 LVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSAR 425

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  +++N +I GY        ++ LF EM+ +G+  +  +F+  +SAC++   + +G+E
Sbjct: 426 ERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGRE 485

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
                   + L   +    +++D   R+G++D A      +P+    S    +LG   L 
Sbjct: 486 YFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLH 545

Query: 239 E-----VDTAINLFEAMREDGV 255
           +      ++A  +FE   ++GV
Sbjct: 546 KNVELAEESAQKIFELGPQEGV 567



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
           SD   +L+ F  M   G    + +F   +  CA    +  G+ +H     + + +    A
Sbjct: 38  SDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAA 97

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR-EDGV 255
            ++ + Y +  R   A ++FD +PV+D  +WN L+ GY   G    A+ +   M+ E+G 
Sbjct: 98  TALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGE 157

Query: 256 GYDPVSYIAIL 266
             D ++ +++L
Sbjct: 158 RPDSITLVSVL 168


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 143/416 (34%), Positives = 241/416 (57%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+ R   A +LF  +  +N+V+WNA++ N   +   L+ ++    +      PN V+
Sbjct: 56  MYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVS 115

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
                 ACA   +L  G++ H  +++ G   D+ + N++ D Y KC C   A+ VF+ + 
Sbjct: 116 ACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMG 175

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+  ++  Y+Q     E+ + +   R  G +        A++ CA L  +  G+ 
Sbjct: 176 VRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRA 235

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H V +R  +  ++FVA++++D Y + G ++ A +IF   P ++  +WN +I GY  +G+
Sbjct: 236 LHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGD 295

Query: 240 VDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
              A+ +F+ M   G    + ++ + ++T+CS GGL + G + F+ M+    ++P   HY
Sbjct: 296 AQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHY 355

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           AC+VDLLGRAG+ E A ++I+ +P+ P  ++WGALLGAC+++G  ELG  AAE LF L P
Sbjct: 356 ACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDP 415

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           Q  G ++LLSNM+A AG+W EA+ +R+ MK+   KK+PGCSWV  ++ V  F   D
Sbjct: 416 QDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKD 471



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 2/135 (1%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQ-GKEIHGVTIR-KHLHTHLFVANSILDFYTRS 206
           M  LG++ +  +F  A  A A+       G +IH + IR  +L    FV+ + LD Y ++
Sbjct: 1   MLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKT 60

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           GR+ LA  +F  +P ++  +WN ++    + G     I  +  +RE G   + VS  A  
Sbjct: 61  GRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFF 120

Query: 267 TACSHGGLVEKGKKY 281
            AC+    +  G+++
Sbjct: 121 NACAGAMYLSLGEQF 135


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 242/414 (58%), Gaps = 4/414 (0%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MYAK     +A   F  +   +++ W+ M++ +AQ     +A +L   M   +  PN  +
Sbjct: 676  MYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFS 735

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            L++VL ACA    L  GK+IH   I+ G   +LF+ NAL D+YAKC  +  +  +F+ S 
Sbjct: 736  LSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFS-SL 794

Query: 121  RD--EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            RD  EVS+N +IVGYS++     +LS+F EMR   +    V++   + ACA+ A+I    
Sbjct: 795  RDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVG 854

Query: 179  EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            ++H +  +   ++   V+NS++D Y + G I  A +IF+ L   D  SWN +I GY + G
Sbjct: 855  QVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHG 914

Query: 239  EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
            +   A  LF+ M ++ +  + ++++A+L+ C   GLV +G   FD M+ D  ++P+  HY
Sbjct: 915  QAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHY 974

Query: 298  ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
             C+V LLGRAG + DA+  I ++P  P A +W ALL +C ++ NVELG ++AE +  ++P
Sbjct: 975  TCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEP 1034

Query: 358  QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
            Q    Y+LLSNMY+ AG  D+ +  R+ M++   +K PG SWV+ + EV  F V
Sbjct: 1035 QDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSV 1088



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 150/322 (46%), Gaps = 3/322 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  + E+N+VS+  +V   A      +A  L + +       N   
Sbjct: 474 MYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFV 533

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           LT VL        L     +HA   + G + + F+ +AL D Y+ CG ++ A+ VF+ I 
Sbjct: 534 LTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIV 593

Query: 120 FRDEVSYNILIVGYSQTSDCSE-SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            +D V++  ++  YS+ +DC E +L +FS+MR+   K +  +    + A   L+++  GK
Sbjct: 594 GKDAVAWTAMVSCYSE-NDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGK 652

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH  +++    T   V  ++LD Y + G I+ A   F+ +   D   W+ +I  Y    
Sbjct: 653 GIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCN 712

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
           + + A  LF  M    V  +  S  ++L AC++  L++ GK+  +       +       
Sbjct: 713 QNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGN 772

Query: 299 CMVDLLGRAGLMEDAVKLIKNL 320
            ++DL  +   ME ++++  +L
Sbjct: 773 ALIDLYAKCSDMESSLEIFSSL 794



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 137/306 (44%), Gaps = 22/306 (7%)

Query: 42  ALQLVREMPIHNEFP----NSVTLTNVLPAC-ARGHFLRPGKEIHARIIRKG--LNFDLF 94
           ALQ + +      FP    +S     +L  C ARG   R G+ +H  ++R G     DLF
Sbjct: 408 ALQWLEDELTSLAFPWPGVDSYAYARLLQGCVARGD-ARGGRAVHGHVVRSGGLARLDLF 466

Query: 95  LTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
             N L +MY K G    A  VF+ +  R+ VS+  L+ G++   +  E+ +LF  +R  G
Sbjct: 467 CANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEG 526

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
            + +       +     +  +     +H    +     + FV ++++D Y+  G +  A 
Sbjct: 527 HEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDAR 586

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA--CSH 271
           ++FD +  KD+ +W  ++  Y      +  + +F  MR      +P +  ++L A  C  
Sbjct: 587 RVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLS 646

Query: 272 GGLVEKGKKYFDEMQADSVKP---TEMH-YACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
             ++ KG      + A SVK    TE H Y  ++D+  + G +EDA +L   +    D  
Sbjct: 647 SVVLGKG------IHACSVKTLYDTERHVYGALLDMYAKCGNIEDA-RLAFEMVTNDDVI 699

Query: 328 IWGALL 333
           +W  ++
Sbjct: 700 LWSLMI 705


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 153/416 (36%), Positives = 241/416 (57%), Gaps = 7/416 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K +   EA  LF  + E+N+VSW  M++ ++  +L  +A++L+  M      PN  T
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++VL AC R + L   K++H+ I++ GL  D+F+ +AL D+Y+K G L  A  VF  + 
Sbjct: 389 FSSVLRACERLYDL---KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMM 445

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V +N +I  ++Q SD  E+L L+  MR +G   D  +    + AC +L+ ++ G++
Sbjct: 446 TGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQ 505

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   ++      L + N++LD Y + G ++ A  IF+ +  KD  SW+T+I G    G 
Sbjct: 506 AHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGF 563

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYA 298
              A+NLFE+M+  G   + ++ + +L ACSH GLV +G  YF  M     + P   HY 
Sbjct: 564 SMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYG 623

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLGRA  ++D VKLI  +  EPD   W  LL ACR   NV+L  +AA+ +  L PQ
Sbjct: 624 CMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQ 683

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G Y+LLSN+YA + +W++ ++VR  MK R  +K PGCSW++   ++  F++ D+
Sbjct: 684 DTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDK 739



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 144/295 (48%), Gaps = 7/295 (2%)

Query: 42  ALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101
           A+ ++  M     + +S+T + ++  C     +R GK +H  I   G +   FLTN L +
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 102 MYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS 160
           MY K   L  AQ +F+ +  R+ VS+  +I  YS       ++ L + M   G+  ++ +
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           F   + AC  L  +KQ   +H   ++  L + +FV ++++D Y++ G +  A K+F  + 
Sbjct: 389 FSSVLRACERLYDLKQ---LHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMM 445

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
             DS  WN++I  +    + D A++L+++MR  G   D  +  ++L AC+   L+E G++
Sbjct: 446 TGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQ 505

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
               +         +    ++D+  + G +EDA K I N   + D   W  ++  
Sbjct: 506 --AHVHVLKFDQDLILNNALLDMYCKCGSLEDA-KFIFNRMAKKDVISWSTMIAG 557



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 92/198 (46%), Gaps = 4/198 (2%)

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
           D   ++ +   M   G+  D +++   I  C    A+++GK +H        H   F+ N
Sbjct: 265 DLPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTN 324

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
            +++ Y +   ++ A  +FD +P ++  SW T+I  Y      D A+ L   M  DGV  
Sbjct: 325 ILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMP 384

Query: 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317
           +  ++ ++L AC     +   K+    +    ++      + ++D+  + G + +A+K+ 
Sbjct: 385 NMFTFSSVLRACER---LYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVF 441

Query: 318 KNLPVEPDANIWGALLGA 335
           + + +  D+ +W +++ A
Sbjct: 442 REM-MTGDSVVWNSIIAA 458


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  287 bits (734), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 143/416 (34%), Positives = 241/416 (57%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+ R   A +LF  +  +N+V+WNA++ N   +   L+ ++    +      PN V+
Sbjct: 163 MYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVS 222

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
                 ACA   +L  G++ H  +++ G   D+ + N++ D Y KC C   A+ VF+ + 
Sbjct: 223 ACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMG 282

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+  ++  Y+Q     E+ + +   R  G +        A++ CA L  +  G+ 
Sbjct: 283 VRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRA 342

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H V +R  +  ++FVA++++D Y + G ++ A +IF   P ++  +WN +I GY  +G+
Sbjct: 343 LHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGD 402

Query: 240 VDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
              A+ +F+ M   G    + ++ + ++T+CS GGL + G + F+ M+    ++P   HY
Sbjct: 403 AQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHY 462

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           AC+VDLLGRAG+ E A ++I+ +P+ P  ++WGALLGAC+++G  ELG  AAE LF L P
Sbjct: 463 ACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDP 522

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           Q  G ++LLSNM+A AG+W EA+ +R+ MK+   KK+PGCSWV  ++ V  F   D
Sbjct: 523 QDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKD 578



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 156/348 (44%), Gaps = 8/348 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K   PA A+    +     +VS+ A ++  AQ+   L AL     M      PN  T
Sbjct: 60  LYSKLDLPAAAAAALASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFT 119

Query: 61  LTNVLPACARGHFLRP-GKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
             +   A A        G +IH+  IR G L  D F++ A  DMY K G L LA+++F  
Sbjct: 120 FPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGE 179

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  R+ V++N ++          E++  +  +R  G   +VVS     +ACA    +  G
Sbjct: 180 MPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLG 239

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           ++ HG  ++      + V NS++DFY +      A  +FD + V++S SW +++  Y   
Sbjct: 240 EQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQN 299

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
           G  + A   +   R    G +P  ++  + LT C+    +  G+          +     
Sbjct: 300 GAEEEAFAAYLGARRS--GEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIF 357

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             + +VD+ G+ G +EDA ++    P + +   W A++G     G+ +
Sbjct: 358 VASALVDMYGKCGCVEDAEQIFYETP-QRNLVTWNAMIGGYAHIGDAQ 404



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 10/214 (4%)

Query: 75  RPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDE----VSYNIL 129
           R G+  HAR +R        F+   L ++Y+K   L+L          D     VSY   
Sbjct: 32  RLGRAAHARALRLIAPALSPFICAHLVNLYSK---LDLPAAAAAALASDPHPTVVSYTAF 88

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ-GKEIHGVTIR-K 187
           I G +Q      +LS F+ M  LG++ +  +F  A  A A+       G +IH + IR  
Sbjct: 89  ISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFG 148

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
           +L    FV+ + LD Y ++GR+ LA  +F  +P ++  +WN ++    + G     I  +
Sbjct: 149 YLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAY 208

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
             +RE G   + VS  A   AC+    +  G+++
Sbjct: 209 FGLREAGGLPNVVSACAFFNACAGAMYLSLGEQF 242


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  287 bits (734), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 143/417 (34%), Positives = 251/417 (60%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K S    A   F+ +  K++VSWN ++    QN  + +AL+L+ +M       N  T
Sbjct: 87  MYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFT 146

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +++VL  CA    +    ++HA  I+  ++ + F+  AL  +YAKC  +  A  +F ++ 
Sbjct: 147 ISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMP 206

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ V+++ ++ GY Q     E+L +F   +L+G   D      A+SACA LA + +GK+
Sbjct: 207 EKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQ 266

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD-CLPVKDSASWNTLILGYGMLG 238
           +H ++ +    ++++V++S++D Y + G I  A  +F   L V+    WN +I G+    
Sbjct: 267 VHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHA 326

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               A+ LFE M++ G   D V+Y+ +L ACSH GL E+G+KYFD M +  ++ P+ +HY
Sbjct: 327 RAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHY 386

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +CM+D+LGRAGL+  A  LI+ +P    +++WG+LL +C+IYGN+E    AA++LF ++P
Sbjct: 387 SCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEP 446

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            + G +ILL+N+YA   KWDE ++ R+L++  + +K  G SW++ ++++  F V +R
Sbjct: 447 NNAGNHILLANIYAANKKWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGER 503



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 157/334 (47%), Gaps = 14/334 (4%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  +L  CA+      G+  HA+IIR GL  D+  +N L +MY+KC  ++ A+  FN + 
Sbjct: 46  LHYLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMP 105

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N +I   +Q ++  E+L L  +M+  G   +  +    +  CA   AI +  +
Sbjct: 106 VKSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQ 165

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H  +I+  + ++ FV  ++L  Y +   I  A+++F+ +P K++ +W++++ GY   G 
Sbjct: 166 LHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGF 225

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ +F   +  G   DP    + ++AC+    + +GK+                 + 
Sbjct: 226 HEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSS 285

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML-KPQ 358
           ++D+  + G + +A  + + +       +W A++            A A E + +  K Q
Sbjct: 286 LIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISG------FARHARAPEAMILFEKMQ 339

Query: 359 HCGY------YILLSNMYAEAGKWDEASKVRELM 386
             G+      Y+ + N  +  G  +E  K  +LM
Sbjct: 340 QRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLM 373


>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
 gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
          Length = 703

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 143/416 (34%), Positives = 241/416 (57%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+ R   A +LF  +  +N+V+WNA++ N   +   L+ ++    +      PN V+
Sbjct: 163 MYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVS 222

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
                 ACA   +L  G++ H  +++ G   D+ + N++ D Y KC C   A+ VF+ + 
Sbjct: 223 ACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMG 282

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+  ++  Y+Q     E+ + +   R  G +        A++ CA L  +  G+ 
Sbjct: 283 VRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRA 342

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H V +R  +  ++FVA++++D Y + G ++ A +IF   P ++  +WN +I GY  +G+
Sbjct: 343 LHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGD 402

Query: 240 VDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
              A+ +F+ M   G    + ++ + ++T+CS GGL + G + F+ M+    ++P   HY
Sbjct: 403 AQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHY 462

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           AC+VDLLGRAG+ E A ++I+ +P+ P  ++WGALLGAC+++G  ELG  AAE LF L P
Sbjct: 463 ACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDP 522

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           Q  G ++LLSNM+A AG+W EA+ +R+ MK+   KK+PGCSWV  ++ V  F   D
Sbjct: 523 QDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKD 578



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 156/348 (44%), Gaps = 8/348 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K   PA A+    +     +VS+ A ++  AQ+   L AL     M      PN  T
Sbjct: 60  LYSKLDLPAAAAAALASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFT 119

Query: 61  LTNVLPACARGHFLRP-GKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
             +   A A        G +IH+  IR G L  D F++ A  DMY K G L LA+++F  
Sbjct: 120 FPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGE 179

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  R+ V++N ++          E++  +  +R  G   +VVS     +ACA    +  G
Sbjct: 180 MPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLG 239

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           ++ HG  ++      + V NS++DFY +      A  +FD + V++S SW +++  Y   
Sbjct: 240 EQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQN 299

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
           G  + A   +   R    G +P  ++  + LT C+    +  G+          +     
Sbjct: 300 GAEEEAFAAYLGARRS--GEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIF 357

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             + +VD+ G+ G +EDA ++    P + +   W A++G     G+ +
Sbjct: 358 VASALVDMYGKCGCVEDAEQIFYETP-QRNLVTWNAMIGGYAHIGDAQ 404



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 10/214 (4%)

Query: 75  RPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDE----VSYNIL 129
           R G+  HAR +R        F+   L ++Y+K   L+L          D     VSY   
Sbjct: 32  RLGRAAHARALRLIAPALSPFICAHLVNLYSK---LDLPAAAAAALASDPHPTVVSYTAF 88

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ-GKEIHGVTIR-K 187
           I G +Q      +LS F+ M  LG++ +  +F  A  A A+       G +IH + IR  
Sbjct: 89  ISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFG 148

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
           +L    FV+ + LD Y ++GR+ LA  +F  +P ++  +WN ++    + G     I  +
Sbjct: 149 YLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAY 208

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
             +RE G   + VS  A   AC+    +  G+++
Sbjct: 209 FGLREAGGLPNVVSACAFFNACAGAMYLSLGEQF 242


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 238/405 (58%), Gaps = 6/405 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F  +  +++VSWN++++ F +     +A+ +   M +    P+  TL +VL ACAR
Sbjct: 159 AGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRMDVE---PSMTTLVSVLAACAR 215

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              L  GK IH  +I +    +L L NA+ DMY K GC   A+N+F+ +  RD VS+ I+
Sbjct: 216 NGDLCTGKGIHG-VIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIM 274

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I G  Q+    +SL LFS MR LG+  D +     +SACA+L  +  G  +H    ++ +
Sbjct: 275 ITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGI 334

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
              + +  +I+D Y + G I++A KIF  +  +++ +WN L+ G  M G V  A+NLFE 
Sbjct: 335 KWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEV 394

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAG 308
           M   GV  + ++++AILTAC H GLV++G+KYFD M +  ++ P   HY CM+DL  RAG
Sbjct: 395 MIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAG 454

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
           L+E+AV+L + +P++PD  IWG LL AC   GN+EL     +++  L     G ++LLSN
Sbjct: 455 LLEEAVELARTMPMKPDVLIWGLLLNACTTVGNIELSHRIQDYILELDHDDSGVFVLLSN 514

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + A   +W   +++R LMK R  +K PG S ++   +  +FVV D
Sbjct: 515 ISAINQRWSNVTRLRRLMKDRGVRKAPGSSVIEVDGKAHEFVVGD 559



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 177/374 (47%), Gaps = 14/374 (3%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           +N+++  +        A+ + R M      P+  T   +L AC+     R G+++H  ++
Sbjct: 73  FNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVV 132

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLS 144
           + GL  D ++ N+L   Y  CG  + A  VF+ +  RD VS+N LI G+ +     E++S
Sbjct: 133 KLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAIS 192

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
           +F  M +   +  + + +  ++ACA    +  GK IHGV I +    +L + N++LD Y 
Sbjct: 193 VFFRMDV---EPSMTTLVSVLAACARNGDLCTGKGIHGV-IERRFKVNLVLGNAMLDMYV 248

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           ++G    A  IFD LP +D  SW  +I G         ++ LF  MR  G+  D +   +
Sbjct: 249 KNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTS 308

Query: 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           +L+AC+  G ++ G    + +    +K        +VD+  + G +E A+K+  ++  + 
Sbjct: 309 VLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMS-QR 367

Query: 325 DANIWGALLGACRIYGNVE--LGAWAAEHLFMLKPQHCGYYILLS-----NMYAEAGKW- 376
           +   W ALL    ++G V   L  +    +  +KP    +  +L+      +  E  K+ 
Sbjct: 368 NTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYF 427

Query: 377 DEASKVRELMKSRE 390
           D  SK+  L+   E
Sbjct: 428 DNMSKLYNLLPKLE 441



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 133/246 (54%), Gaps = 3/246 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+    EA  +F  +  ++IVSW  M+    Q+    ++L+L   M      P+++ 
Sbjct: 246 MYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAII 305

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           LT+VL ACA    L  G  +H  I ++G+ +D+ +  A+ DMYAKCGC+ +A  +F ++S
Sbjct: 306 LTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMS 365

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+  ++N L+ G +      E+L+LF  M + G+K + ++F+  ++AC +   + +G++
Sbjct: 366 QRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRK 425

Query: 180 -IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGML 237
               ++   +L   L     ++D + R+G ++ A ++   +P+K D   W  L+     +
Sbjct: 426 YFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTV 485

Query: 238 GEVDTA 243
           G ++ +
Sbjct: 486 GNIELS 491



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 163/362 (45%), Gaps = 58/362 (16%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC------GCLNLAQNVFNISFRDEVSYN 127
           LR  ++IHA+++  GL +D F+T+ + + +A         C  L Q    +       +N
Sbjct: 18  LRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTRLG---SFPFN 74

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            LI GY        ++S++  M   G   D+ +F   + AC+N +  ++G+++HGV ++ 
Sbjct: 75  SLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKL 134

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            L    +V NS++  Y   G    A K+FD + V+D  SWN+LI G+   G  D AI++F
Sbjct: 135 GLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVF 194

Query: 248 EAMREDGVGYDPVSYIAILTACS-----------HG-----------------------G 273
             M    V     + +++L AC+           HG                       G
Sbjct: 195 FRM---DVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGNAMLDMYVKNG 251

Query: 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IKNLPVEPDANIWG 330
              + K  FDE+    +    + +  M+  L ++   + +++L   ++ L + PDA I  
Sbjct: 252 CFYEAKNIFDELPTRDI----VSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILT 307

Query: 331 ALLGACRIYGNVELGAWAAEHLFMLKPQ---HCGYYILLSNMYAEAGKWDEASKVRELMK 387
           ++L AC   G ++ G W  E++     +   H G  I+  +MYA+ G  + A K+   M 
Sbjct: 308 SVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIV--DMYAKCGCIEMALKIFYSMS 365

Query: 388 SR 389
            R
Sbjct: 366 QR 367


>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
 gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
          Length = 598

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 149/415 (35%), Positives = 242/415 (58%), Gaps = 5/415 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y    +  +A  +F  +AE+++VSW A+++ F +  + ++AL ++ EM +    PN VTL
Sbjct: 163 YGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMDVT---PNEVTL 219

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF- 120
            +VL AC      R GK +H    R+    +L + NAL DMY KC  L+LA+ VF++   
Sbjct: 220 ASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLA 279

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VS+ ++I G  Q    SE+L +F+ M++ G+K D V     +SACA+L A++ G+ +
Sbjct: 280 RDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWV 339

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H    RK +   + V  S++D Y + G +D A  IF  +P+K+ +SWN LI G+ + G  
Sbjct: 340 HEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRG 399

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYAC 299
             A++ F+ M   G+  + V++I +L AC H GLV++G++ F+ M ++  + P E HY C
Sbjct: 400 REALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGC 459

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGRAGL+++A  +IK +P+ P    W  LL AC+ +G ++       H+  L+   
Sbjct: 460 MVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQAHGRMDFSQQILMHIHELESSG 519

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            G Y+LLSNMYA + +W +  K R  M  +  +K PG S ++   +  +F+V  +
Sbjct: 520 NGIYVLLSNMYAVSDRWADVGKARGFMNEKGMQKEPGSSVIEVNGKTCEFLVGQQ 574



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 150/302 (49%), Gaps = 6/302 (1%)

Query: 42  ALQLVREMPIHNEFPNSVTLTNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALT 100
           AL LV         P+  TL   L ACAR G  LR G + HA   + G    + + NAL 
Sbjct: 101 ALLLVASGAGAGARPDGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALV 160

Query: 101 DMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
             Y  CG    A+ VF+ ++ RD VS+  L+  +++     E+L + +EM +     + V
Sbjct: 161 TFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMDV---TPNEV 217

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           +    + AC NL   + GK +HG   R+    +L V N++LD Y +  ++DLA ++FD L
Sbjct: 218 TLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDML 277

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
             +D  SW  +I G         A+ +F AM+  GV  D V    +L+AC+  G +E G+
Sbjct: 278 LARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGR 337

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
              + ++   ++        +VD+  + G ++ AV + + +P++ + + W AL+    ++
Sbjct: 338 WVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLK-NVSSWNALINGFALH 396

Query: 340 GN 341
           G 
Sbjct: 397 GR 398



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 128/255 (50%), Gaps = 3/255 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +   A  +F  +  ++IVSW  M++   Q +   +AL++   M I    P+ V 
Sbjct: 260 MYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVV 319

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L+ VL ACA    L  G+ +H  I RKG+ +D+ +  ++ DMY KCGCL+ A ++F  + 
Sbjct: 320 LSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMP 379

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++  S+N LI G++      E+L  F  M   G+  + V+F+  + AC +   +++G++
Sbjct: 380 LKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQ 439

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA-SWNTLILGYGML 237
           +  +  + + L         ++D   R+G I  A  +   +P++    +W TL+      
Sbjct: 440 LFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQAH 499

Query: 238 GEVDTAINLFEAMRE 252
           G +D +  +   + E
Sbjct: 500 GRMDFSQQILMHIHE 514



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 127/304 (41%), Gaps = 48/304 (15%)

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLL-----GMKHDVVSFMGAISACANLAA-IKQGKE 179
           +N LI   +   D S +   F+ + +      G + D  +   A+ ACA L   +++G +
Sbjct: 80  FNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREGCQ 139

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H V  +      + V N+++ FY   G+   A K+FD +  +D  SW  L+  +   G 
Sbjct: 140 AHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGGM 199

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK----YFDEMQADSV----K 291
              A+ +   M    V  + V+  ++L AC + G    GK     YF   +  ++     
Sbjct: 200 FMEALGVLAEMD---VTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNA 256

Query: 292 PTEMHYAC-MVDLLGR-----------------AGLME-----DAVKLIKNLP---VEPD 325
             +M+  C  +DL  R                 +GL++     +A+++   +    V+PD
Sbjct: 257 LLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPD 316

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ---HCGYYILLSNMYAEAGKWDEASKV 382
             +   +L AC   G +E G W  E++     +   H G  ++  +MY + G  D A  +
Sbjct: 317 KVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVV--DMYVKCGCLDTAVSI 374

Query: 383 RELM 386
            + M
Sbjct: 375 FQEM 378


>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 148/417 (35%), Positives = 243/417 (58%), Gaps = 5/417 (1%)

Query: 2   YAKSSRPAEASYLFHNIAE-KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y+K     +A  +F + A  +++V+WN+++A +     E  A +L+ +M  H   P+  +
Sbjct: 245 YSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYS 304

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC--GCLNLAQNVF-N 117
            T+++ AC   +    G+ +H  +I++G    + ++NAL  MY K   G +  A  +F +
Sbjct: 305 YTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFES 364

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           + F+D VS+N ++ G SQT    +++  F  MR   M  D  SF   + +C++LA  + G
Sbjct: 365 LEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLG 424

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           ++IH + ++  L ++ FV++S++  Y++ G I+ A + F+      S +WN L+ GY   
Sbjct: 425 QQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQH 484

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G+ + A++LF  M    V  D ++++A+LTACSH GLVE+G K+   M++D  V P   H
Sbjct: 485 GQCNVALDLFFLMEXKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEH 544

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YAC VDL GR+G +E+A  LI+ +P +PD  +W   LGACR  GN+EL    A HL  ++
Sbjct: 545 YACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEME 604

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P+    Y+LLSNMY    +WDE +KV+ LMK R  KK PG SW++  + V  F+  D
Sbjct: 605 PEEHCTYVLLSNMYGNLMRWDEKAKVKRLMKERGVKKVPGWSWIEVNNNVHAFIAQD 661



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 169/347 (48%), Gaps = 9/347 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  +  +A   F +I++ N VSWNAM+  +AQ      A  L+  M    E  +  T
Sbjct: 143 MYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGT 202

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS- 119
              +LP      F     ++H +II+ GL     + NAL   Y+KCG L+ A+ +F+ S 
Sbjct: 203 YAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSA 262

Query: 120 -FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD V++N L+  Y   S    +  L  +M+  G + D+ S+   ISAC N      G+
Sbjct: 263 GIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGR 322

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRS--GRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            +HG+ I++     + ++N+++  Y +S  G +  A  IF+ L  KD  SWN+++ G   
Sbjct: 323 SLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQ 382

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G  + A+  F  MR   +  D  S+ A+L +CS     + G++         ++  E  
Sbjct: 383 TGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFV 442

Query: 297 YACMVDLLGRAGLMEDAVKLI----KNLPVEPDANIWG-ALLGACRI 338
            + ++ +  + G++EDA +      KN  +  +A ++G A  G C +
Sbjct: 443 SSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNV 489



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 193/445 (43%), Gaps = 60/445 (13%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A  LF  +  ++ VSWN M+A          +  ++R M       +  T 
Sbjct: 43  YWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGFELDRYTF 102

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            ++L   A       G+++H+ II+ G   +++  +AL DMYAKC  L  A   F +IS 
Sbjct: 103 GSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSISK 162

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
            + VS+N +I GY+Q  D   +  L   M   G K D  ++   +    +        ++
Sbjct: 163 HNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQL 222

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLILGYGMLGE 239
           HG  I+  L     + N+++  Y++ G +D A +IFD    ++D  +WN+L+  Y +  +
Sbjct: 223 HGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQ 282

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG---------- 278
            D A  L   M+E G   D  SY +I++AC            HG ++++G          
Sbjct: 283 EDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNA 342

Query: 279 ------KKYFDEMQA-----DSVK-PTEMHYACMVDLLGRAGLMEDAVKL---IKNLPVE 323
                 K  +  M+      +S++    + +  ++  L + G  EDAVK    +++  ++
Sbjct: 343 LISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMD 402

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN---------MYAEAG 374
            D   + A+L +C      +LG     H+  LK      Y L SN         MY++ G
Sbjct: 403 IDHYSFSAVLRSCSDLATFQLGQQI--HVLALK------YGLESNEFVSSSLIFMYSKCG 454

Query: 375 KWDEASKVRELMKSREAKKNPGCSW 399
             ++A +  E     EA KN   +W
Sbjct: 455 IIEDARRSFE-----EASKNSSITW 474



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 119/267 (44%), Gaps = 23/267 (8%)

Query: 81  HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDC 139
           H+  ++ G   D++  N + + Y KC  L  A  +F+ +  RD VS+N +I G+    + 
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
             S  +   MR  G + D  +F   +   A       G+++H + I+     +++  +++
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSAL 140

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
           LD Y +  +++ A   F  +   ++ SWN +I GY   G+ +TA  L + M ++G   D 
Sbjct: 141 LDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDD 200

Query: 260 VSYIAI-----------LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            +Y  +           LT+  HG +++ G +  + M              ++    + G
Sbjct: 201 GTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTM-----------CNALITSYSKCG 249

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGA 335
            ++DA ++  +     D   W +LL A
Sbjct: 250 SLDDAKRIFDSSAGIRDLVTWNSLLAA 276


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 150/405 (37%), Positives = 237/405 (58%), Gaps = 8/405 (1%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP---IHNEFPNSVTLTNVLPACAR 70
           LF  + E++ VS+N ++A +A N+     L+L REM       +     T+ +V  +   
Sbjct: 491 LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPD 550

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
            H    GK+IHA+++  GL  +  L NAL DMY+KCG L+ A++ F N S +  +S+  L
Sbjct: 551 VHI---GKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTAL 607

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY Q     E+L LFS+MR  G++ D  +F   I A ++LA I  G+++H   IR   
Sbjct: 608 ITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGY 667

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            + +F  + ++D Y + G +D A + FD +P ++S SWN +I  Y   GE   AI +FE 
Sbjct: 668 KSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEG 727

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAG 308
           M   G   D V+++++L ACSH GL ++  KYF  M+   S+ P + HYAC++D LGR G
Sbjct: 728 MLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVG 787

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
                 K++  +P + D  IW ++L +CRI+GN EL   AA+ LF ++P     Y++LSN
Sbjct: 788 CFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSN 847

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +YA AG+W++A+ V+++M+ R  +K  G SWV+ + ++  F  ND
Sbjct: 848 IYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASND 892



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 149/335 (44%), Gaps = 27/335 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+ S     A +LF +   +N  +W  M+   A       AL L R M      P+ VT+
Sbjct: 298 YSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTV 357

Query: 62  TNVL--PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T VL  P C           +H   I+ GL+  +F+ N L D Y K G L  A+ VF  +
Sbjct: 358 TTVLNLPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEM 410

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D V+YN +++G S+    +++L LF+ MR  G     +  +    + +   ++    
Sbjct: 411 HDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQYSHSRSRSTSV---- 466

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
                        ++FV NS+LDFY++   +D   ++FD +P +D+ S+N +I  Y    
Sbjct: 467 ------------LNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQ 514

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
              T + LF  M++ G     + Y  +L+       V  GK+   ++    +   ++   
Sbjct: 515 CAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGN 574

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            ++D+  + G+++ A     N   E  A  W AL+
Sbjct: 575 ALIDMYSKCGMLDAAKSNFSNRS-EKSAISWTALI 608



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 146/320 (45%), Gaps = 37/320 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A   F N +EK+ +SW A++  + QN    +ALQL  +M      P+  T
Sbjct: 579 MYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRAT 638

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++++ A +    +  G+++H+ +IR G    +F  + L DMYAKCGCL+ A   F+ + 
Sbjct: 639 FSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP 698

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ +S+N +I  Y+   +   ++ +F  M   G   D V+F+  ++AC           
Sbjct: 699 ERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAAC----------- 747

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
                      +H  +A+  + ++       L    +   P K+   +  +I     LG 
Sbjct: 748 -----------SHNGLADECMKYF------HLMKHQYSISPWKE--HYACVI---DTLGR 785

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE-MHYA 298
           V     + + + E     DP+ + +IL +C   G  E  +   D++    ++PT+   Y 
Sbjct: 786 VGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFG--MEPTDATPYV 843

Query: 299 CMVDLLGRAGLMEDAVKLIK 318
            + ++  RAG  EDA  + K
Sbjct: 844 ILSNIYARAGQWEDAACVKK 863



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%)

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
           H ++F  N IL  Y+ SG +  A  +F   P +++ +W  ++  +   G    A++LF A
Sbjct: 285 HKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRA 344

Query: 250 MREDGVGYDPVSYIAIL 266
           M  +GV  D V+   +L
Sbjct: 345 MLGEGVIPDRVTVTTVL 361


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 255/416 (61%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  LF  +  +++VSWN MV +  QN    KAL L  +M       +  T
Sbjct: 91  MYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDSEKALVLFMQMQKEGISCSEFT 150

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +++V+ ACA    +   K++H   ++  L+ ++F+  AL D+YAKCG +  A  VF  + 
Sbjct: 151 VSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMP 210

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R +V+++ ++ GY Q     E+L LF   + +G++H+  +   A+SACA  AA+ +GK+
Sbjct: 211 ERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQ 270

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +  V  +  + +++FV +S++D Y + G I+ A  +F  +  K+   WN ++ G+     
Sbjct: 271 VQAVLCKTGIGSNIFVISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFSRHVR 330

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+  FE M++ G+  + ++YI++LTACSH GLVEKG+KYFD M +  +V P  +HY+
Sbjct: 331 SLEAMIYFEKMQQMGICPNEITYISVLTACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYS 390

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGRAGL+ +A  LI  +P +  A++WG+LL +CRIY N+E    AA+HLF ++P 
Sbjct: 391 CMVDILGRAGLLHEAKDLIDRMPFDATASMWGSLLASCRIYRNLEXAEVAAKHLFEIEPH 450

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G ++LLSN+YA   +W+E ++ R L+K  +AKK  G SW++ + +V  F+V +R
Sbjct: 451 NAGNHVLLSNIYAANNRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGER 506



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 146/275 (53%), Gaps = 2/275 (0%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L ++L + AR      G   HA+IIR GL  D   +N L +MY+KCG +  A+ +F+ + 
Sbjct: 50  LQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMP 109

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS+N ++  ++Q  D  ++L LF +M+  G+     +    + ACA    + + K+
Sbjct: 110 VRSLVSWNTMVGSHTQNGDSEKALVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFECKQ 169

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  ++  L +++FV  ++LD Y + G +  A+ +F+C+P +   +W++++ GY     
Sbjct: 170 LHGFALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNEL 229

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ LF   +  G+ ++  +  + L+AC+    + +GK+    +    +       + 
Sbjct: 230 YEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVLCKTGIGSNIFVISS 289

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
           ++D+  + G++E+A  +  ++  E +  +W A+L 
Sbjct: 290 LIDMYAKCGIIEEAYIVFSSVE-EKNVVLWNAMLS 323


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  286 bits (733), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 152/417 (36%), Positives = 241/417 (57%), Gaps = 8/417 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP---IHNEFPNS 58
           Y+K     +   LF  + E++ VS+N ++A +A N+     L+L REM       +    
Sbjct: 281 YSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPY 340

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
            T+ +V  +    H    GK+IHA+++  GL  +  L NAL DMY+KCG L+ A++ F N
Sbjct: 341 ATMLSVAGSLPDVHI---GKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSN 397

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
            S +  +S+  LI GY Q     E+L LFS+MR  G++ D  +F   I A ++LA I  G
Sbjct: 398 RSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLG 457

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           +++H   IR    + +F  + ++D Y + G +D A + FD +P ++S SWN +I  Y   
Sbjct: 458 RQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHY 517

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           GE   AI +FE M   G   D V+++++L ACSH GL ++  KYF  M+   S+ P + H
Sbjct: 518 GEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEH 577

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YAC++D LGR G      K++  +P + D  IW ++L +CRI+GN EL   AA+ LF ++
Sbjct: 578 YACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGME 637

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P     Y++LSN+YA AG+W++A+ V+++M+ R  +K  G SWV+ + ++  F  ND
Sbjct: 638 PTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASND 694



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 159/335 (47%), Gaps = 11/335 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+ S     A +LF +   +N  +W  M+   A       AL L R M      P+ VT+
Sbjct: 84  YSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTV 143

Query: 62  TNVL--PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T VL  P C           +H   I+ GL+  +F+ N L D Y K G L  A+ VF  +
Sbjct: 144 TTVLNLPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEM 196

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D V+YN +++G S+    +++L LF+ MR  G+     +F   ++  A +A +  G 
Sbjct: 197 HDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGH 256

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++H + +R     ++FV NS+LDFY++   +D   ++FD +P +D+ S+N +I  Y    
Sbjct: 257 QVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQ 316

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
              T + LF  M++ G     + Y  +L+       V  GK+   ++    +   ++   
Sbjct: 317 CAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGN 376

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            ++D+  + G+++ A     N   E  A  W AL+
Sbjct: 377 ALIDMYSKCGMLDAAKSNFSNRS-EKSAISWTALI 410



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 144/315 (45%), Gaps = 37/315 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A   F N +EK+ +SW A++  + QN    +ALQL  +M      P+  T
Sbjct: 381 MYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRAT 440

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++++ A +    +  G+++H+ +IR G    +F  + L DMYAKCGCL+ A   F+ + 
Sbjct: 441 FSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP 500

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ +S+N +I  Y+   +   ++ +F  M   G   D V+F+  ++AC           
Sbjct: 501 ERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAAC----------- 549

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
                      +H  +A+  + ++       L    +   P K+   +  +I     LG 
Sbjct: 550 -----------SHNGLADECMKYF------HLMKHQYSISPWKE--HYACVI---DTLGR 587

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE-MHYA 298
           V     + + + E     DP+ + +IL +C   G  E  +   D++    ++PT+   Y 
Sbjct: 588 VGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFG--MEPTDATPYV 645

Query: 299 CMVDLLGRAGLMEDA 313
            + ++  RAG  EDA
Sbjct: 646 ILSNIYARAGQWEDA 660



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%)

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
           H ++F  N IL  Y+ SG +  A  +F   P +++ +W  ++  +   G    A++LF A
Sbjct: 71  HKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRA 130

Query: 250 MREDGVGYDPVSYIAIL 266
           M  +GV  D V+   +L
Sbjct: 131 MLGEGVIPDRVTVTTVL 147


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  286 bits (733), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 152/434 (35%), Positives = 239/434 (55%), Gaps = 43/434 (9%)

Query: 20  EKNIVSWNAMVANFAQN-RLELKALQLVREMPIHNE--FPNSVTLTNVLPACARGHFLRP 76
           E N+++WN +V+   ++ R     L LVR   +H E   P++  ++  L A      +  
Sbjct: 118 EPNVITWNGLVSGLNRSGRARDAVLALVR---MHGEGFLPDATGVSCALSAVGDVGDVAV 174

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           G+++H  +++ G   D  +  AL DMY KCG  +    VF+  S  D  S N L+ G S+
Sbjct: 175 GEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSR 234

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC--------------------------- 168
            +  SE+L LF E    G++ +VVS+   ++ C                           
Sbjct: 235 NAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVT 294

Query: 169 --------ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
                   AN+AA+  G+  H  ++RK  H  ++V ++++D Y + GR+  A  IF+ +P
Sbjct: 295 IPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMP 354

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            ++  SWN +I GY M GE + A+ LF +M+      D V++  +L ACS  G  E+G+ 
Sbjct: 355 YRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRS 414

Query: 281 YFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
           YF+EMQ    + P   HYACMV LLGRAG ++DA  +I  +P EPD  IWG+LLG+CR++
Sbjct: 415 YFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVH 474

Query: 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSW 399
           GNV L   AAE+LF L+P++ G Y+LLSN+YA    WD  +++R++MK+   KK  GCSW
Sbjct: 475 GNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSW 534

Query: 400 VQTRDEVQDFVVND 413
           ++ +++V   +  D
Sbjct: 535 IEIKNKVHMLLAGD 548



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 143/273 (52%), Gaps = 13/273 (4%)

Query: 3   AKSSRPAEASYLFHNIA----EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           +++++ +EA  LF        E N+VSW ++VA   QN  +L+A+ L REM      PNS
Sbjct: 233 SRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNS 292

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           VT+  VLPA A    L  G+  H   +RKG + D+++ +AL DMYAKCG +  A+ +F  
Sbjct: 293 VTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEA 352

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           + +R+ VS+N +I GY+   +   ++ LF  M+    K D+V+F   + AC+     ++G
Sbjct: 353 MPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEG 412

Query: 178 KEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTL----- 230
           +        KH +   +     ++    R+G++D A  I + +P + D   W +L     
Sbjct: 413 RSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCR 472

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
           + G  +L EV  A NLF+   E+   Y  +S I
Sbjct: 473 VHGNVVLAEV-AAENLFQLEPENAGNYVLLSNI 504



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 143/359 (39%), Gaps = 75/359 (20%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P+   L + L +C+    LR  + +HA     G++ D F+ ++L   Y + G    A++V
Sbjct: 21  PDPRLLPSALKSCS---ALRLARALHAAAAVAGVSRDAFVASSLLHAYLRFGATADARSV 77

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMG----------- 163
            + +  R  V ++ LI  ++   D   +  L   MR  G++ +V+++ G           
Sbjct: 78  LDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRA 137

Query: 164 ------------------------AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
                                   A+SA  ++  +  G+++HG  ++        VA ++
Sbjct: 138 RDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATAL 197

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
           +D Y + GR D   ++FD     D AS N L+ G     +V  A+ LF      G+  + 
Sbjct: 198 IDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNV 257

Query: 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC-------------------- 299
           VS+ +I+  C   G   +    F EMQ++ ++P  +   C                    
Sbjct: 258 VSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCF 317

Query: 300 ---------------MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
                          +VD+  + G + DA  + + +P   +   W A++G   ++G  E
Sbjct: 318 SLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYR-NVVSWNAMIGGYAMHGEAE 375



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R  +A  +F  +  +N+VSWNAM+  +A +     A++L R M    E P+ VT
Sbjct: 336 MYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVT 395

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
            T VL AC++  +   G+     +  K G++  +     +  +  + G L+ A ++ N
Sbjct: 396 FTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIIN 453


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 147/417 (35%), Positives = 237/417 (56%), Gaps = 4/417 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K     +A  +   + EKN+VSW AM++ ++Q     +AL +  EM   +  PN  T 
Sbjct: 97  YGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTF 156

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL +C R   L  GK+IH  I++   +  +F+ ++L DMYAK G +  A+ +F  +  
Sbjct: 157 ATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPE 216

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VS   +I GY+Q     E+L +F  +   GM  + V++   ++A + LA +  GK+ 
Sbjct: 217 RDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQA 276

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   +R+ L  +  + NS++D Y++ G +  A ++FD +P + + SWN +++GY   G  
Sbjct: 277 HCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLG 336

Query: 241 DTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS--VKPTEMHY 297
              + LF  MR E  V  D V+ +A+L+ CSHG + + G   FD M A     KP   HY
Sbjct: 337 REVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHY 396

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C+VD+LGRAG +++A + IK +P +P A + G+LLGACR++ +V++G      L  ++P
Sbjct: 397 GCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEP 456

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           ++ G Y++LSN+YA AG+W + + VR +M  +   K PG SW+Q    +  F  NDR
Sbjct: 457 ENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDR 513



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 148/271 (54%), Gaps = 2/271 (0%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L AC     LR G+ +HA +I+       +L   L   Y KC CL  A+ V + +  ++
Sbjct: 58  LLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 117

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            VS+  +I  YSQT   SE+L++F+EM     K +  +F   +++C   + +  GK+IHG
Sbjct: 118 VVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHG 177

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
           + ++ +  +H+FV +S+LD Y ++G+I  A +IF+CLP +D  S   +I GY  LG  + 
Sbjct: 178 LIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEE 237

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
           A+ +F  +  +G+  + V+Y ++LTA S   L++ GK+    +    +    +    ++D
Sbjct: 238 ALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLID 297

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +  + G +  A +L  N+P E  A  W A+L
Sbjct: 298 MYSKCGNLSYARRLFDNMP-ERTAISWNAML 327



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 4/237 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+ +  EA  +F  + E+++VS  A++A +AQ  L+ +AL++   +      PN VT
Sbjct: 197 MYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVT 256

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             ++L A +    L  GK+ H  ++R+ L F   L N+L DMY+KCG L+ A+ +F N+ 
Sbjct: 257 YASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMP 316

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMR-LLGMKHDVVSFMGAISACANLAAIKQGK 178
            R  +S+N ++VGYS+     E L LF  MR    +K D V+ +  +S C++      G 
Sbjct: 317 ERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGL 376

Query: 179 EIHGVTIRKHLHTHLFVAN--SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
            I    +     T     +   I+D   R+GRID A +    +P K +A     +LG
Sbjct: 377 NIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLG 433



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 84/175 (48%), Gaps = 2/175 (1%)

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           EM +LG +     +   ++AC +  A++ G+ +H   I+       ++   +L FY +  
Sbjct: 42  EMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCD 101

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF-EAMREDGVGYDPVSYIAIL 266
            ++ A K+ D +P K+  SW  +I  Y   G    A+ +F E MR DG   +  ++  +L
Sbjct: 102 CLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKP-NEFTFATVL 160

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
           T+C     +  GK+    +   +        + ++D+  +AG +++A ++ + LP
Sbjct: 161 TSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLP 215


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 151/406 (37%), Positives = 240/406 (59%), Gaps = 2/406 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           +A  LF  +  ++ VSW+ MV  FA+    +      RE+      P++ TL  V+ AC 
Sbjct: 112 DAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACR 171

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
               L+ G+ IH  + + GL+ D F+  AL DMY KC  +  A+ +F+ +  RD V++ +
Sbjct: 172 DLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTV 231

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +I GY++    +ESL LF +MR  G+  D V+ +  + ACA L A+ + + I     RK 
Sbjct: 232 MIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKK 291

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
               + +  +++D Y + G ++ A +IFD +  K+  SW+ +I  YG  G+   A++LF 
Sbjct: 292 FQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFP 351

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
            M   G+  D ++  ++L ACSH GLVE+G ++F  M  D SV+    HY C+VDLLGRA
Sbjct: 352 MMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRA 411

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
           G +++A+KLIK++ +E D  +WGA LGACR + +V L   AA  L  L+ Q+ G+Y+LLS
Sbjct: 412 GRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLS 471

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           N+YA AG+W++ +K+R+LM  R  KK PG +W++  ++   F V D
Sbjct: 472 NIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGD 517



 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/406 (36%), Positives = 241/406 (59%), Gaps = 2/406 (0%)

Query: 10   EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
            +A  LF  +  ++ VSW+ MV  FA+    +      RE+      P++ TL  V+ AC 
Sbjct: 788  DAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACR 847

Query: 70   RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
                L+ G+ IH  + + GL+ D F+  AL DMY KC  +  A+ +F+ +  RD V++ +
Sbjct: 848  DLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTV 907

Query: 129  LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
            +I GY++  + +ESL LF +MR  G+  D V+ +  + ACA L A+ + + I     RK 
Sbjct: 908  MIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKK 967

Query: 189  LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
                + +  +++D + + G ++ A +IFD +  K+  SW+ +I  YG  G+   A++LF 
Sbjct: 968  FQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFP 1027

Query: 249  AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
             M   G+  + ++ +++L ACSH GLVE+G ++F  M  D SV+    HY C+VDLLGRA
Sbjct: 1028 MMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRA 1087

Query: 308  GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
            G +++A+KLI ++  E D  +WGA LGACR + +V L   AA  L  L+PQ+ G+YILLS
Sbjct: 1088 GRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLS 1147

Query: 368  NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            N+YA AG+W++ +K+R+LM  R  KK PG +W++  ++   F V D
Sbjct: 1148 NIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGD 1193



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 136/300 (45%), Gaps = 12/300 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A +LF  + E+++V+W  M+  +A+     ++L L  +M      P+ V 
Sbjct: 204 MYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVA 263

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  V+ ACA+   +   + I   I RK    D+ L  A+ DMYAKCGC+  A+ +F+ + 
Sbjct: 264 MVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRME 323

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ +S++ +I  Y       ++L LF  M   GM  D ++    + AC++   +++G  
Sbjct: 324 EKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLR 383

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KDSASWNTLILGYGML 237
                   + + T +     ++D   R+GR+D A K+   + + KD   W   +      
Sbjct: 384 FFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTH 443

Query: 238 GEV----DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
            +V      A +L E   +     +P  Y+ +    ++ G  E   K  D M    +K T
Sbjct: 444 KDVVLAEKAATSLLELQSQ-----NPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKT 498



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 113/234 (48%), Gaps = 3/234 (1%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MY K     +A +LF  + E+++V+W  M+  +A+     ++L L  +M      P+ V 
Sbjct: 880  MYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVA 939

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +  V+ ACA+   +   + I   I RK    D+ L  A+ DM+AKCGC+  A+ +F+ + 
Sbjct: 940  MVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRME 999

Query: 120  FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             ++ +S++ +I  Y       ++L LF  M   G+  + ++ +  + AC++   +++G  
Sbjct: 1000 EKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLR 1059

Query: 180  IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KDSASWNTLI 231
                    + +   +     ++D   R+GR+D A K+   +   KD   W   +
Sbjct: 1060 FFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFL 1113



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 1/168 (0%)

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           + Q +++H       +  +L VAN ++ FY+    +D A  +FD + V+DS SW+ ++ G
Sbjct: 751 LTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 810

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
           +  +G+       F  +   G   D  +   ++ AC     ++ G+     +    +   
Sbjct: 811 FAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLD 870

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
               A +VD+ G+   +EDA  L   +  E D   W  ++G     GN
Sbjct: 871 HFVCAALVDMYGKCREIEDARFLFDKM-XERDLVTWTVMIGGYAECGN 917



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 1/171 (0%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           ISA  N   + Q +++H       +  ++ VAN ++ FY+    +D A  +FD + V+DS
Sbjct: 66  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 125

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            SW+ ++ G+  +G+       F  +   G   D  +   ++ AC     ++ G+     
Sbjct: 126 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHI 185

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +    +       A +VD+  +   +EDA  L   +  E D   W  ++G 
Sbjct: 186 VYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQ-ERDLVTWTVMIGG 235


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 154/414 (37%), Positives = 238/414 (57%), Gaps = 4/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  I   +++ W+ +++ +AQ+    +A ++   M   +  PN  +
Sbjct: 295 MYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFS 354

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L+ VL ACA   FL  G++IH  +I+ G   +LF+ NAL D+YAKC  +  +  +F  S 
Sbjct: 355 LSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFR-SL 413

Query: 121 RD--EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           RD  EVS+N +IVGY Q+    ++LS+F EMR   +    V+F   + ACAN A+IK   
Sbjct: 414 RDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTV 473

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH +  +   +    V NS++D Y + G I  A K+F+ +   D  SWN +I GY + G
Sbjct: 474 QIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHG 533

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A+ LF  M +     + V+++A+L+ C   GLV +G   F+ M  D  +KP+  HY
Sbjct: 534 RATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHY 593

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C+V LLGRAG + DA+K I ++P  P   +W ALL +C ++ NV LG ++AE +  ++P
Sbjct: 594 TCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEP 653

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           Q    Y+LLSNMYA AG  D+ + +R+ M++   KK  G SWV+ + EV  F V
Sbjct: 654 QDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSV 707



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 161/340 (47%), Gaps = 5/340 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK    A A  LF  + E+N+VS+  +V  +A      +A  L R +       N   
Sbjct: 93  LYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFV 152

Query: 61  LTNVLPACARGHFLRPGKE--IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           LT +L          PG    IHA   + G + + F+ ++L D Y+ CG ++ A+ VF+ 
Sbjct: 153 LTTILKVLVAMD--APGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDG 210

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           I ++D V++  ++  YS+     ++L+ FS+MR+ G K +       + A   L++   G
Sbjct: 211 IIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLG 270

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K IHG  ++    T   V  ++LD Y + G I+ A  +F+ +P  D   W+ LI  Y   
Sbjct: 271 KGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQS 330

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
            + + A  +F  M    V  +  S   +L AC++   ++ G++  + +     +      
Sbjct: 331 YQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVG 390

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
             ++D+  +   ME+++++ ++L    + +    ++G C+
Sbjct: 391 NALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQ 430



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 151/337 (44%), Gaps = 26/337 (7%)

Query: 8   PAEASYLFHNIAEKNIVSWNAMVANFAQNRL--ELKALQLVREMPIHNEFPNSVTLTNVL 65
           P+    L    ++ N+     + AN A   L  EL +L L +         +S     +L
Sbjct: 3   PSRCRRLLPTFSQPNVPLRRNLAANAALQWLDDELASLALPK--------LDSYACARLL 54

Query: 66  PAC-ARGHFLRPGKEIHARIIRKG--LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
             C ARG   R G+ +HAR++++G     D F  N L ++YAK G L  A+ +F+ +  R
Sbjct: 55  QRCIARGD-ARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPER 113

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE-- 179
           + VS+  L+ GY+      E+  LF  ++  G  H+V  F+        +A    G    
Sbjct: 114 NMVSFVTLVQGYALRGGFEEAAGLFRRLQREG--HEVNHFVLTTILKVLVAMDAPGLTCC 171

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH    +     + FV +S++D Y+  G +  A  +FD +  KD+ +W  ++  Y     
Sbjct: 172 IHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDI 231

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTA--CSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
            + A+N F  MR  G   +P    ++L A  C    ++ KG          ++  TE H 
Sbjct: 232 PEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKG---IHGCAVKTLCDTEPHV 288

Query: 298 -ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
              ++D+  + G +EDA  + + +P   D  +W  L+
Sbjct: 289 GGALLDMYAKCGYIEDARTVFEIIP-HDDVILWSFLI 324


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 151/416 (36%), Positives = 231/416 (55%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  +   A  +    A K++VSW  M+A + Q   + KAL   R+M       + V 
Sbjct: 517 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 576

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           LTN + ACA    L+ G++IHA+    G + DL   NAL  +Y+KCG +  A   F    
Sbjct: 577 LTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTE 636

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D +++N L+ G+ Q+ +  E+L +F+ M   G+  +  +F  A+ A +  A +KQGK+
Sbjct: 637 AGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQ 696

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H V  +    +   V N+I+  Y + G I  A K F  L +K+  SWN +I  Y   G 
Sbjct: 697 VHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGF 756

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++ F+ M    V  + V+ + +L+ACSH GLV+KG +YF+ M  +  + P   HY 
Sbjct: 757 GSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYV 816

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VD+L RAGL+  A   I  +P+EPDA +W  LL AC ++ N+E+G +AA HL  L+P+
Sbjct: 817 CVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPE 876

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y+LLSN+YA   KWD     R+ MK +  KK PG SW++ ++ +  F V D+
Sbjct: 877 DSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQ 932



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 190/407 (46%), Gaps = 45/407 (11%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + E+ I +WN M+   A   L  K   L   M   N  PN  T + VL AC  G  
Sbjct: 125 VFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSV 184

Query: 74  -LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
                ++IHARII +GL     + N L D+Y++ G ++ A+ VF+ +  +D  S+  +I 
Sbjct: 185 AFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMIS 244

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           G S+     E++ LF +M +LG+     +F   +SAC  + +++ G+++HG+ ++    +
Sbjct: 245 GLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSS 304

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
             +V N+++  Y   G +  A  IF  +  +D+ ++NTLI G    G  + A+ LF+ M+
Sbjct: 305 DTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQ 364

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKK------------------------------- 280
            DG+  D  +  +++ ACS  G +  G++                               
Sbjct: 365 LDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIE 424

Query: 281 ----YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE---PDANIWGALL 333
               YF E + ++V    + +  M+   G    + ++ ++ + + +E   P+   + ++L
Sbjct: 425 TALNYFLETEVENV----VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSIL 480

Query: 334 GACRIYGNVELGAWAAEHLFMLKPQHCGYYI-LLSNMYAEAGKWDEA 379
             C   G++ELG      +     Q   Y   +L +MYA+ GK D A
Sbjct: 481 KTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTA 527



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 165/314 (52%), Gaps = 1/314 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+++     A  +F  +  K+  SW AM++  ++N  E++A++L  +M +    P    
Sbjct: 214 LYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYA 273

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            ++VL AC +   L  G+++H  +++ G + D ++ NAL  +Y   G L  A+++F N+S
Sbjct: 274 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMS 333

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V+YN LI G SQ     +++ LF  M+L G++ D  +    + AC++   +  G++
Sbjct: 334 QRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQ 393

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H  T +    ++  +  ++L+ Y +   I+ A   F    V++   WN +++ YG+L +
Sbjct: 394 LHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDD 453

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +  +  +F  M+ + +  +  +Y +IL  C   G +E G++   ++   S +      + 
Sbjct: 454 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSV 513

Query: 300 MVDLLGRAGLMEDA 313
           ++D+  + G ++ A
Sbjct: 514 LIDMYAKLGKLDTA 527



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 160/335 (47%), Gaps = 4/335 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A ++F N+++++ V++N ++   +Q     KA++L + M +    P+S TL +++ AC+ 
Sbjct: 325 AEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSS 384

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
              L  G+++HA   + G   +  +  AL ++YAKC  +  A N F      + V +N++
Sbjct: 385 DGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVM 444

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           +V Y    D   S  +F +M++  +  +  ++   +  C  L  ++ G++IH   I+   
Sbjct: 445 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSF 504

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             + +V + ++D Y + G++D A  I      KD  SW T+I GY      D A+  F  
Sbjct: 505 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 564

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M + G+  D V     ++AC+    +++G++   +               +V L  + G 
Sbjct: 565 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGN 624

Query: 310 MEDAVKLIKNLPVEPDANI-WGALLGACRIYGNVE 343
           +E+A    +    E   NI W AL+   +  GN E
Sbjct: 625 IEEAYLAFEQ--TEAGDNIAWNALVSGFQQSGNNE 657



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 148/327 (45%), Gaps = 37/327 (11%)

Query: 56  PNSVTLTNVLPACARGH-FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
           PN  TL  +L  C + +  L  G+++H++I++ G + +  L+  L D Y   G L+ A  
Sbjct: 65  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALK 124

Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC-ANLA 172
           VF+ +  R   ++N +I   +  S   +   LF  M    +  +  +F G + AC     
Sbjct: 125 VFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSV 184

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           A    ++IH   I + L     V N ++D Y+R+G +D A ++FD L +KD +SW  +I 
Sbjct: 185 AFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMIS 244

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK------------ 280
           G         AI LF  M   G+   P ++ ++L+AC     +E G++            
Sbjct: 245 GLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSS 304

Query: 281 -----------YF--------DEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
                      YF        + + ++  +   + Y  +++ L + G  E A++L K + 
Sbjct: 305 DTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQ 364

Query: 322 ---VEPDANIWGALLGACRIYGNVELG 345
              +EPD+N   +L+ AC   G +  G
Sbjct: 365 LDGLEPDSNTLASLVVACSSDGTLFSG 391


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 150/448 (33%), Positives = 254/448 (56%), Gaps = 33/448 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+ S   + A  +F   ++ ++V+WN M++ + +++   ++++L  EM      P+S+T
Sbjct: 163 LYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSIT 222

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
           L +VL AC++   L  GK +H  +    +     L NAL DMYA CG ++ A  +F+   
Sbjct: 223 LVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMK 282

Query: 118 ----ISF-------------------------RDEVSYNILIVGYSQTSDCSESLSLFSE 148
               IS+                         RD VS+  +I GY Q +   E LSLF E
Sbjct: 283 SRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFRE 342

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M+   +K D  + +  ++ACA+L A++ G+ I     +  +    FV N+++D Y   G 
Sbjct: 343 MQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGN 402

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           ++ A +IF+ +P +D  SW  +I G  + G  + A+++F  M +  +  D V+ I +L A
Sbjct: 403 VEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCA 462

Query: 269 CSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           C+H G+V+KGKK+F  M     ++P   HY CMVDLLGRAG +++A ++IKN+PV+P++ 
Sbjct: 463 CTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSI 522

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           +WG+LLGACR++ + E+   AA+ +  L+P++   Y+LL N+YA   +W++  +VR+LM 
Sbjct: 523 VWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMM 582

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVNDRM 415
            R  KK PGCS ++    V +FV  D++
Sbjct: 583 DRGIKKTPGCSLIEMNGSVHEFVAGDQV 610



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 171/365 (46%), Gaps = 39/365 (10%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F  +   N   WN M+  +++      A+ +  EM      P+  T   +L    R
Sbjct: 72  ARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTR 131

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNIL 129
              ++ G+E+H  I++ G + ++F+ NAL  +Y+  G +++A+ VF+ S + D V++N++
Sbjct: 132 DTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVM 191

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY+++    ES+ LF EM  + +    ++ +  +SAC+ L  +  GK +H       +
Sbjct: 192 ISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKI 251

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
                + N+++D Y   G +D A  IFD +  +D  SW  ++ G+  LG+V  A N F+ 
Sbjct: 252 EPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDK 311

Query: 250 MRE----------DG---------------------VGYDPVSYIAILTACSHGGLVEKG 278
           M E          DG                     +  D  + ++ILTAC+H G +E G
Sbjct: 312 MPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELG 371

Query: 279 ---KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
              K Y D+   + +K        ++D+    G +E A+++   +P   D   W A++  
Sbjct: 372 EWIKAYIDK---NEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMP-HRDKISWTAVIFG 427

Query: 336 CRIYG 340
             I G
Sbjct: 428 LAING 432



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 130/271 (47%), Gaps = 4/271 (1%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAK--CGCLNLAQNVFN-ISFRDEVSYNILIVGYS 134
           K+IH++ I  GL  +  +   +     K   G +  A+ VF+ +   +   +N +I GYS
Sbjct: 36  KQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYS 95

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
           +    + ++S++ EM   G+  D  ++   +       A+K G+E+H   ++    +++F
Sbjct: 96  RVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVF 155

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           V N+++  Y+ SG + +A  +FD     D  +WN +I GY    + D ++ LF+ M    
Sbjct: 156 VQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMR 215

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
           V    ++ +++L+ACS    +  GK+    ++   ++P  +    ++D+    G M+ A+
Sbjct: 216 VLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTAL 275

Query: 315 KLIKNLPVEPDANIWGALLGACRIYGNVELG 345
            +  N+    D   W A++      G V L 
Sbjct: 276 GIFDNMKSR-DVISWTAIVTGFTNLGQVGLA 305


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 150/415 (36%), Positives = 240/415 (57%), Gaps = 3/415 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+++    EA  LF      ++V+WNAM++ + Q+    K L+L   M    E  +  TL
Sbjct: 469 YSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTL 527

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL  C     +  GK++HA  I+ G + DL++++ + DMY KCG ++ AQ  F+ I  
Sbjct: 528 ATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV 587

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
            D+V++  LI G  +  +   +L +FS+MRL+G+  D  +      A + L A++QG++I
Sbjct: 588 PDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQI 647

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++ +  +  FV  S++D Y + G ID A  +F  + + +  +WN +++G    GE 
Sbjct: 648 HANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEG 707

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             A+ LF+ M   G+  D V++I +L+ACSH GLV +  KY   M  D  +KP   HY+C
Sbjct: 708 KEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSC 767

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           + D LGRAGL+++A  LI ++ +E  A+++  LL ACR+ G+ E G   A  L  L+P  
Sbjct: 768 LADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLD 827

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
              Y+LLSNMYA A KWDE    R +MK  + KK+PG SW++ ++++  FVV+DR
Sbjct: 828 SSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDR 882



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 174/334 (52%), Gaps = 2/334 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +   A  +F+N++E++++SWN+++A  AQ+ LE++A+ L  ++      P+  T
Sbjct: 366 MYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYT 425

Query: 61  LTNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           +T+VL A +     L   K+IH   I+     D F++ AL D Y++  C+  A+ +F  +
Sbjct: 426 MTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGRN 485

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V++N ++ GY+Q+ D  ++L LF+ M   G + D  +    +  C  L AI QGK+
Sbjct: 486 NFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQ 545

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+      L+V++ ILD Y + G +  A   FD +PV D  +W TLI G    GE
Sbjct: 546 VHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGE 605

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+++F  MR  GV  D  +   +  A S    +E+G++        +          
Sbjct: 606 EERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTS 665

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +VD+  + G ++DA  L K + +  +   W A+L
Sbjct: 666 LVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAML 698



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 146/320 (45%), Gaps = 4/320 (1%)

Query: 19  AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78
           A   I+S N +++ +         L+   +M   +   + VT   VL    R   L  G+
Sbjct: 283 AVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQ 342

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTS 137
           ++H   ++ GL+  L ++N+L +MY K   + LA+ VF N+S RD +S+N +I G +Q+ 
Sbjct: 343 QVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSD 402

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA-AIKQGKEIHGVTIRKHLHTHLFVA 196
              E++ LF ++   G+K D  +    + A ++L   +   K+IH   I+ +     FV+
Sbjct: 403 LEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVS 462

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
            +++D Y+R+  +  A  +F      D  +WN ++ GY    +    + LF  M + G  
Sbjct: 463 TALIDAYSRNRCMKEAEVLFGRNNF-DLVAWNAMMSGYTQSHDGHKTLELFALMHKQGER 521

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            D  +   +L  C     + +GK+                 + ++D+  + G M  A   
Sbjct: 522 SDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFA 581

Query: 317 IKNLPVEPDANIWGALLGAC 336
             ++PV PD   W  L+  C
Sbjct: 582 FDSIPV-PDDVAWTTLISGC 600



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 6/185 (3%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           GK  HARI+    N + FL N L  MY+KCG L  A+ VF+ +  RD VS+N ++  Y+Q
Sbjct: 65  GKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQ 124

Query: 136 TSD-----CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH 190
           +S+       E+  LF  +R   +    ++    +  C +   +   +  HG   +  L 
Sbjct: 125 SSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLD 184

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
              FVA ++++ Y + G++     +F+ +P +D   WN ++  Y  +G  + AI+L  A 
Sbjct: 185 GDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF 244

Query: 251 REDGV 255
              G+
Sbjct: 245 HTSGL 249



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/369 (20%), Positives = 155/369 (42%), Gaps = 57/369 (15%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLEL-----KALQLVREMPIHNEF 55
           MY+K      A  +F  + E+++VSWN+++A +AQ+   +     +A  L R +     +
Sbjct: 90  MYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVY 149

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
            + +TL+ +L  C    ++   +  H    + GL+ D F+  AL ++Y K G +   + +
Sbjct: 150 TSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVL 209

Query: 116 F-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM------GAISAC 168
           F  + +RD V +N+++  Y +     E++ L S     G+  + ++        G  S  
Sbjct: 210 FEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSEA 269

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR--------IDLANKIFDC-- 218
             + + + G +   V       + +   N IL  Y  +G+        +D+     +C  
Sbjct: 270 GQVKSFENGNDASAV-------SEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQ 322

Query: 219 ----LPVKDSASWNTLILGYG------------MLGEVDTAINLFEAMREDGVG------ 256
               L +  +   ++L LG              ML   ++ IN++  +R+ G+       
Sbjct: 323 VTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNN 382

Query: 257 ---YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
               D +S+ +++   +   L  +    F ++    +KP   HY  M  +L  A  + + 
Sbjct: 383 MSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPD--HYT-MTSVLKAASSLPEG 439

Query: 314 VKLIKNLPV 322
           + L K + V
Sbjct: 440 LSLSKQIHV 448



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  LF  I   NI +WNAM+   AQ+    +ALQL ++M      P+ VT
Sbjct: 669 MYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVT 728

Query: 61  LTNVLPACARGHFLRPG-KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
              VL AC+    +    K I +     G+  ++   + L D   + G +  A+N+ +
Sbjct: 729 FIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLID 786


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 159/416 (38%), Positives = 242/416 (58%), Gaps = 8/416 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  LF  + ++N+VSW  M++ ++ + L  KAL  +  M      PN  T
Sbjct: 60  MYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYT 119

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++VL AC     LR   ++H  I++ GL  D+F+ +AL D Y+K G  + A NVFN + 
Sbjct: 120 YSSVLRACDGLLNLR---QLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMI 176

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V +N +I G++Q SD  E+L L+  M+      D  +    + AC  LA ++ G++
Sbjct: 177 TGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQ 236

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD-CLPVKDSASWNTLILGYGMLG 238
           +H V + K+    L + N++LD Y + G ++ AN +F   +  KD  SW+T+I G    G
Sbjct: 237 VH-VHVLKY-DQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNG 294

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A+ LFEAM+  G   + ++ + +L ACSH GLV  G  YF  M+    + P   HY
Sbjct: 295 FSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHY 354

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C++DLLGRAG +++AVKLI  +  EPDA  W  LLGACR++ NV+L  +AA+ +  L P
Sbjct: 355 GCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDP 414

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
              G YILLSN+YA + KW++ ++VR  M++R  KK+PGCSW++   +V  F++ D
Sbjct: 415 ADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGD 470



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 136/280 (48%), Gaps = 6/280 (2%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           +++T + ++  C     ++  + +H  +   G     FL N L +MY K G L+ A+N+F
Sbjct: 15  DAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLF 74

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           + +  R+ VS+  +I  YS ++   ++L     M   G++ ++ ++   + AC  L  ++
Sbjct: 75  DEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNLR 134

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           Q   +HG  ++  L + +FV ++++D Y++ G    A  +F+ +   D   WN++I G+ 
Sbjct: 135 Q---LHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFA 191

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
              + D  ++L++ M+      D  +  ++L AC+   L+E G++    +         +
Sbjct: 192 QNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQV--HVHVLKYDQDLI 249

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
               ++D+  + G +EDA  L   +  E D   W  ++  
Sbjct: 250 LNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAG 289


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 153/416 (36%), Positives = 256/416 (61%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  LF  +  +++VSWN MV +  QN    KAL L  +M       +  T
Sbjct: 64  MYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFT 123

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +++V+ ACA    +   K++H   ++  L+ ++F+  AL D+YAKCG +  A  VF  + 
Sbjct: 124 VSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMP 183

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R +V+++ ++ GY Q     E+L LF   + +G++H+  +   A+SACA  AA+ +GK+
Sbjct: 184 ERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQ 243

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +  V+ +  + +++FV +S++D Y + G I+ A  +F  +  K+   WN ++ G+     
Sbjct: 244 VQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVR 303

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+  FE M++ G+  + ++YI++L+ACSH GLVEKG+KYFD M +  +V P  +HY+
Sbjct: 304 SLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYS 363

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGRAGL+ +A   I  +P +  A++WG+LL +CRIY N+EL   AA+HLF ++P 
Sbjct: 364 CMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPH 423

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G ++LLSN+YA   +W+E ++ R L+K  +AKK  G SW++ + +V  F+V +R
Sbjct: 424 NAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGER 479



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 149/280 (53%), Gaps = 10/280 (3%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L ++L + AR      G   HA+IIR GL  D   +N L +MY+KCG +  A+ +F+ + 
Sbjct: 23  LQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMP 82

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS+N ++  ++Q  DC ++L LF +M+  G      +    + ACA    + + K+
Sbjct: 83  VRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQ 142

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  ++  L +++FV  ++LD Y + G +  AN +F+C+P +   +W++++ GY     
Sbjct: 143 LHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNEL 202

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK----PTEM 295
            + A+ LF   +  G+ ++  +  + L+AC+    + +GK    ++QA S K        
Sbjct: 203 YEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGK----QVQAVSCKTGIGSNIF 258

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
             + ++D+  + G++E+A  +  ++  E +  +W A+L  
Sbjct: 259 VISSLIDMYAKCGIIEEAYTVFSSVE-EKNVVLWNAILSG 297


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 153/416 (36%), Positives = 256/416 (61%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  LF  +  +++VSWN MV +  QN    KAL L  +M       +  T
Sbjct: 91  MYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFT 150

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +++V+ ACA    +   K++H   ++  L+ ++F+  AL D+YAKCG +  A  VF  + 
Sbjct: 151 VSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMP 210

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R +V+++ ++ GY Q     E+L LF   + +G++H+  +   A+SACA  AA+ +GK+
Sbjct: 211 ERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQ 270

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +  V+ +  + +++FV +S++D Y + G I+ A  +F  +  K+   WN ++ G+     
Sbjct: 271 VQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVR 330

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+  FE M++ G+  + ++YI++L+ACSH GLVEKG+KYFD M +  +V P  +HY+
Sbjct: 331 SLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYS 390

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGRAGL+ +A   I  +P +  A++WG+LL +CRIY N+EL   AA+HLF ++P 
Sbjct: 391 CMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPH 450

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G ++LLSN+YA   +W+E ++ R L+K  +AKK  G SW++ + +V  F+V +R
Sbjct: 451 NAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGER 506



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 149/280 (53%), Gaps = 10/280 (3%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L ++L + AR      G   HA+IIR GL  D   +N L +MY+KCG +  A+ +F+ + 
Sbjct: 50  LQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMP 109

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS+N ++  ++Q  DC ++L LF +M+  G      +    + ACA    + + K+
Sbjct: 110 VRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQ 169

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  ++  L +++FV  ++LD Y + G +  AN +F+C+P +   +W++++ GY     
Sbjct: 170 LHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNEL 229

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK----PTEM 295
            + A+ LF   +  G+ ++  +  + L+AC+    + +GK    ++QA S K        
Sbjct: 230 YEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGK----QVQAVSCKTGIGSNIF 285

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
             + ++D+  + G++E+A  +  ++  E +  +W A+L  
Sbjct: 286 VISSLIDMYAKCGIIEEAYTVFSSVE-EKNVVLWNAILSG 324


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 151/398 (37%), Positives = 234/398 (58%), Gaps = 4/398 (1%)

Query: 21  KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACARGHFLRPGKE 79
           +++VSWN+M++ + Q+     AL++  E+       P+ VTL + L  C R   L  GK+
Sbjct: 193 RDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKK 252

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSD 138
           IH      G   D+F+ ++L DMY+KCG +  A+ VF+ I  R+ V +  +I GY+Q+  
Sbjct: 253 IHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDL 312

Query: 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
             E++ LF EM++ G   D  +    +SAC +  A+ QG+ IH    R  +   L   N+
Sbjct: 313 FKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNA 372

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE-DGVGY 257
           ++  Y++ G I  A +IF  L   D  SW+ +I G  M GE D A++LF  M     +  
Sbjct: 373 LIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRP 432

Query: 258 DPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
           + ++++ +L AC+HGG V+KG  YF+ M Q  ++ P   HY CMVDLLGRA L+ +A K 
Sbjct: 433 NEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKF 492

Query: 317 IKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376
           I+ LP++PD  IW +LL ACR +GN+EL  +AA+ +  L+P+ CG  +LLSN+YA A +W
Sbjct: 493 IRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRW 552

Query: 377 DEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            +  +VR+ M ++  KK PGCS+V+    V +  V DR
Sbjct: 553 GDVKRVRKDMATQRIKKQPGCSFVEIDGLVHELFVADR 590



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 179/346 (51%), Gaps = 13/346 (3%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           LF  I + N+ SWN M   ++++    + + L   M  +   P++ +   VL ACAR   
Sbjct: 83  LFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSL 142

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI---SFRDEVSYNILI 130
           L  G+EIH+  ++ G++ D+F+ NAL   ++ CG +  A+ VF++     RD VS+N +I
Sbjct: 143 LHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMI 202

Query: 131 VGYSQTSDCSESLSLFSEMRLLG---MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            GY Q+     +L +F E  LLG   +  D V+ + A+S C  L  +  GK+IHG+    
Sbjct: 203 SGYLQSHRYELALKVFWE--LLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGS 260

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                +FV +S++D Y++ G+I+ A K+FD +P +++  W ++I GY        AI LF
Sbjct: 261 GFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELF 320

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
             M+  G   D  +   +L+AC H G + +G+      + +S++        ++ +  + 
Sbjct: 321 REMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKC 380

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
           G ++ A+++   L  +PD   W A++    + G  +     A HLF
Sbjct: 381 GDIQKALEIFHGL-TQPDIFSWSAVISGLAMNGESD----KALHLF 421



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 126/247 (51%), Gaps = 4/247 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  +  +A  +F  I  +N V W +M+A +AQ+ L  +A++L REM I     ++ T
Sbjct: 275 MYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAAT 334

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  VL AC     L  G+ IH    R  +  DL   NAL  MY+KCG +  A  +F+ ++
Sbjct: 335 IACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLT 394

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQG- 177
             D  S++ +I G +   +  ++L LFS+M ++  ++ + ++F+G + AC +   + +G 
Sbjct: 395 QPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGL 454

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGM 236
              + +T   +L   +     ++D   R+  +  A K    LP++ D   W +L+     
Sbjct: 455 YYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRN 514

Query: 237 LGEVDTA 243
            G ++ A
Sbjct: 515 HGNIELA 521


>gi|222636858|gb|EEE66990.1| hypothetical protein OsJ_23896 [Oryza sativa Japonica Group]
          Length = 659

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/437 (34%), Positives = 253/437 (57%), Gaps = 18/437 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP---- 56
           MYAK    A A  +F  + ++++VSWN+M++++A      +A++L R M      P    
Sbjct: 194 MYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLI 253

Query: 57  ----------NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC 106
                     + VTL   L AC+R  +LR GKEIH   +R   +    ++NAL  MYA+C
Sbjct: 254 REMVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARC 313

Query: 107 GCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSE-SLSLFSEMRLLGMKHDVVSFMGA 164
             +  A+ +F  +     V++N ++  ++  SDC+E + S+F EM   G+K + V+ +  
Sbjct: 314 KDMECARMLFRMLECPGVVTWNTMLSSFA-LSDCAEEASSIFREMICRGVKPNYVTVVTY 372

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           ++ CA +A ++ G+E+HG  ++     +  + NS++D Y++SGR+ +A  +FD +   D 
Sbjct: 373 LALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDM 432

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            S+ ++I GYGM G+   A+ LFE M + G+  D +  + +L+ACSH GLV +G++ F++
Sbjct: 433 ISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNK 492

Query: 285 MQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           M     +KP   HY+CM+DL  RAGL+E A +++ + P  P + +W AL+GAC   GN+E
Sbjct: 493 MVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGACHDRGNIE 552

Query: 344 LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTR 403
           +G  AA  L  ++ ++ G+Y+L++NMYA AG WDE + VR+LM+     K PG +W    
Sbjct: 553 IGERAARKLLEMRTENAGHYVLIANMYAAAGCWDELATVRKLMRDLGVTKAPGLAWTDLG 612

Query: 404 DEVQDFVVNDRMKTFTP 420
           +    F+V DR     P
Sbjct: 613 NGFTPFLVGDRSNPLAP 629



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 178/392 (45%), Gaps = 61/392 (15%)

Query: 47  REMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC 106
           +EM  +   P+  T  +VL ACA    L  G+ +H      G++ +LF  NAL  MYAKC
Sbjct: 139 QEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAKC 198

Query: 107 GCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMR--------LL----- 152
           G L  A+ VF+ +  RD VS+N +I  Y+     +E++ LF  MR        L+     
Sbjct: 199 GDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLIREMVR 258

Query: 153 -GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211
            G + D V+ +  ++AC+ +  ++ GKEIHG+ +R        V+N+++  Y R   ++ 
Sbjct: 259 GGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDMEC 318

Query: 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271
           A  +F  L      +WNT++  + +    + A ++F  M   GV  + V+ +  L  C+ 
Sbjct: 319 ARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCAR 378

Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG----------LMED--------- 312
              ++ G++    +     K   + +  ++D+  ++G           M+D         
Sbjct: 379 VANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSM 438

Query: 313 ------------AVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--- 354
                       A++L + +    ++PD  I   +L AC   G V  G    E LF    
Sbjct: 439 IAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEG----EELFNKMV 494

Query: 355 ----LKPQHCGYYILLSNMYAEAGKWDEASKV 382
               +KPQ   +Y  + ++YA AG  ++A ++
Sbjct: 495 ISYGIKPQ-MEHYSCMIDLYARAGLLEKAEEM 525



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 21/207 (10%)

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           + EM   G+  DV ++   + ACA    +  G+ +H       +  +LF  N+++  Y +
Sbjct: 138 YQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAK 197

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV---------- 255
            G +  A K+FD +  +D  SWN++I  Y  +G+   A+ LF  MR++G           
Sbjct: 198 CGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLIREMV 257

Query: 256 -GYDPVSYIAI---LTACSHGGLVEKGKKYFD---EMQADSVKPTEMHYACMVDLLGRAG 308
            G   V Y+ +   L ACS  G +  GK+       M  D V+        ++ +  R  
Sbjct: 258 RGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVS---NALITMYARCK 314

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGA 335
            ME A  L + L   P    W  +L +
Sbjct: 315 DMECARMLFRMLEC-PGVVTWNTMLSS 340


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 151/416 (36%), Positives = 240/416 (57%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +   A  +F  +  K +V+WN+M+  +      +  +QL + M      P   T
Sbjct: 251 MYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTT 310

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           LT+ L AC++   L  GK +H  IIR  +  D+FL ++L D+Y KCG +  A+ +F +  
Sbjct: 311 LTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMP 370

Query: 121 RDE-VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           +   VS+N++I GY       ++L LF EM    ++ D ++F   ++AC+ LAA+++G+E
Sbjct: 371 KTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGRE 430

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH + + ++L  +  V  ++LD Y + G ++ A  +F CLP +D  SW ++I  YG  G 
Sbjct: 431 IHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGR 490

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
           V  A+ LF  M +  V  D V+++AIL+ACSH GLV+ G  +F++M     + P   HY+
Sbjct: 491 VYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYS 550

Query: 299 CMVDLLGRAGLMEDAVKLIKNLP-VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           C++ LLGRAG + +A +++++ P +  D  +   L  ACR++ N++LG   AE+L    P
Sbjct: 551 CLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDP 610

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
                YI+LSNMYA  GKWDE   VR  MK    KKNPGCSW++  +++  F V D
Sbjct: 611 DDSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWIEINEKIVPFFVED 666



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 194/372 (52%), Gaps = 8/372 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK +    A  LF  + +K++  WN +++ + Q+    +AL+    M      P+SVT
Sbjct: 150 MYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVT 209

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +T  + +CAR   L  G+EIH  ++  G   D F++ AL DMY KCG L +A  VF  + 
Sbjct: 210 ITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMP 269

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  V++N +I GY    D    + LF  M   G+K  + +    + AC+  A + +GK 
Sbjct: 270 NKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKF 329

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  IR  +   +F+ +S++D Y + G+++ A  IF  +P   + SWN +I GY   G+
Sbjct: 330 VHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGK 389

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +  A+ LF  M +  V  D +++ ++L ACS    +EKG++  + +   ++   E+    
Sbjct: 390 LFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGA 449

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC----RIYGNVELGAWAAEHLFML 355
           ++D+  + G +E+A  + K LP E D   W +++ A     R+Y  +EL A   +    +
Sbjct: 450 LLDMYAKCGAVEEAFGVFKCLP-ERDLVSWTSMITAYGSHGRVYEALELFAEMLQS--NV 506

Query: 356 KPQHCGYYILLS 367
           KP    +  +LS
Sbjct: 507 KPDRVTFLAILS 518



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 192/402 (47%), Gaps = 39/402 (9%)

Query: 27  NAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACARGHFLRPGKEIHARII 85
           N ++A + +N +  +AL L  ++  +    P+S T  +VL AC     +  G+ IH  ++
Sbjct: 74  NGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLV 133

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLS 144
           ++GL  D+ + ++L  MYAKC     A  +F+ +  +D   +N +I  Y Q+    E+L 
Sbjct: 134 KEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALR 193

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
            F  MR  G + D V+   AIS+CA L  + +G+EIH   +        FV+ +++D Y 
Sbjct: 194 YFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYG 253

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           + G++++A ++F+ +P K   +WN++I GYG  G+  + I LF+ M  +GV     +  +
Sbjct: 254 KCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTS 313

Query: 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP--- 321
            L ACS    + +GK     +  + ++P     + ++DL  + G +E A  + K +P   
Sbjct: 314 TLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTT 373

Query: 322 -------------------------------VEPDANIWGALLGACRIYGNVELGAWAAE 350
                                          VEPDA  + ++L AC     +E G     
Sbjct: 374 TVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGR-EIH 432

Query: 351 HLFMLKPQHCGYYIL--LSNMYAEAGKWDEASKVRELMKSRE 390
           +L + +       ++  L +MYA+ G  +EA  V + +  R+
Sbjct: 433 NLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERD 474



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 134/264 (50%), Gaps = 3/264 (1%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  +L A      L+ GK +H +++  GL  D+++   L  +Y  C   + A+NVF+ I 
Sbjct: 6   LIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIE 65

Query: 120 FRDEVSY-NILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQG 177
              E+S  N L+ GY++     E+L LF ++     +K D  ++   + AC  L  +  G
Sbjct: 66  NPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLG 125

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + IH   +++ L   + V +S++  Y +    + A K+FD +P KD A WNT+I  Y   
Sbjct: 126 QMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQS 185

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G+ + A+  F  MR  G   D V+    +++C+    +++G++   E+     +      
Sbjct: 186 GKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVS 245

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLP 321
           A +VD+ G+ G +E A+++ + +P
Sbjct: 246 AALVDMYGKCGQLEMAIEVFEQMP 269


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 155/415 (37%), Positives = 242/415 (58%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY  +    EA  LF  +  K+IVSW  M++ +  N L  KA+   R M   +  P+ +T
Sbjct: 341 MYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEIT 400

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +  VL ACA    L  G E+H   I+  L   + + N L +MY+KC C++ A ++F NI 
Sbjct: 401 VAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIP 460

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ +S+  +I G    + C E+L    +M++  ++ + ++   A++ACA + A+  GKE
Sbjct: 461 RKNVISWTSIIAGLRLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKE 519

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +R  +    F+ N++LD Y R GR++ A   F+    KD  SWN L+ GY   G+
Sbjct: 520 IHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLTGYSERGQ 578

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
               + LF+ M +  V  D +++I++L  CS   +V +G  YF +M+   V P   HYAC
Sbjct: 579 GSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYAC 638

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLLGRAG +++A K I+ +PV PD  +WGALL ACRI+  ++LG  +A+H+F L  + 
Sbjct: 639 VVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKS 698

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            GYYILL N+YA+ GKW E +KVR +MK      + GCSWV+ + +V  F+ +D+
Sbjct: 699 VGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDK 753



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 171/344 (49%), Gaps = 11/344 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLV-REMPIHNEFPNSV 59
           M+ +     +A Y+F  ++E+N+ SWN +V  +A+     +A+ L  R + +    P+  
Sbjct: 138 MFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVY 197

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   VL  C     L  GKE+H  ++R G   D+ + NAL  MY KCG +  A+ +F+ +
Sbjct: 198 TFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRM 257

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD +S+N +I GY +   C E L LF  MR L +  D+++    ISAC  L   + G+
Sbjct: 258 PRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGR 317

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH   I       + V NS+   Y  +G    A K+F  +  KD  SW T+I GY    
Sbjct: 318 DIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNF 377

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             D AI+ +  M +D V  D ++  A+L+AC+  G ++ G     E+   ++K   + Y 
Sbjct: 378 LPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGV----ELHKLAIKARLISYV 433

Query: 299 C----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
                ++++  +   ++ A+ +  N+P   +   W +++   R+
Sbjct: 434 IVANNLINMYSKCKCIDKALDIFHNIP-RKNVISWTSIIAGLRL 476



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 121/298 (40%), Gaps = 42/298 (14%)

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           G        E++ L + M+ L +  D   F+  +  C    A ++G +++ + +      
Sbjct: 68  GLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSL 127

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            + + N+ L  + R G +  A  +F  +  ++  SWN L+ GY   G  D A+ L+  M 
Sbjct: 128 GVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRML 187

Query: 252 -EDGVGYDPVSYIAILTACSHGGLVEKGK-------KYFDEMQADSVKP-TEMHYAC--- 299
              GV  D  ++  +L  C     + +GK       +Y  E+  D V     M+  C   
Sbjct: 188 WVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDV 247

Query: 300 -----MVDLLGRA---------------GLMEDAVKL---IKNLPVEPDANIWGALLGAC 336
                + D + R                G+  + ++L   ++ L V+PD     +++ AC
Sbjct: 248 KSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISAC 307

Query: 337 RIYGNVELG----AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390
            + G+  LG    A+     F +    C     L+ MY  AG W EA K+   M+ ++
Sbjct: 308 ELLGDRRLGRDIHAYVITTGFAVDISVCNS---LTQMYLNAGSWREAEKLFSRMERKD 362


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 246/456 (53%), Gaps = 42/456 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  LF+ + E++ VSWN +++N+A   L  +A +L  EM +     N +T
Sbjct: 187 MYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVNIIT 246

Query: 61  LTNV-----------------------------------LPACARGHFLRPGKEIHARII 85
              +                                   L AC+    ++ G  IHA  I
Sbjct: 247 WNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHASAI 306

Query: 86  RKGLNFDLF--LTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSES 142
           R    FD F  + NAL  MY++C  L  A  +F +I  +   ++N ++ GY+      E+
Sbjct: 307 RSC--FDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEA 364

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH-LHTHLFVANSILD 201
             LF EM   G++ + V+    +  CA +A ++QGKE H   +R+     +L + NS+++
Sbjct: 365 SFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVE 424

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y RSG++  A ++FD L  +D  ++ +LI GYG+ GE  TA+ LF+ M +  +  D V+
Sbjct: 425 MYARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVT 484

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
            +A+L+ACSH GLV +G   F++M     + P   H++CMVDL GRAGL+  A K+I ++
Sbjct: 485 MVAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSM 544

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
           P  P   +W  L+GACRI+GN E+G WAAE L  +KP++ GYY+L++NM+A AG+W + +
Sbjct: 545 PYRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAGRWSKLA 604

Query: 381 KVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMK 416
           +VR  M+    +K PGC+WV        FVV D  K
Sbjct: 605 EVRTYMRDLGVRKAPGCTWVDVGSGFSPFVVGDTSK 640



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 168/357 (47%), Gaps = 38/357 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+  S  A+A  +  N    N + WN +++++  N L  +AL   REM      P++ T 
Sbjct: 86  YSSFSLLADAHTITVNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTY 145

Query: 62  TNVLPACARGHFLRPGKEIHARI-IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +VL AC     L  G+E+H  I    G  ++L++ N+L  MY K G L+ A+ +FN + 
Sbjct: 146 PSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMP 205

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS-------------FMGA-- 164
            RD VS+N +I  Y+      E+  LF EMRL G + ++++             F GA  
Sbjct: 206 ERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALE 265

Query: 165 --------------------ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
                               + AC+++ AIK G  IH   IR        V N+++  Y+
Sbjct: 266 LLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITMYS 325

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           R   +  A+ +F  +  K   +WN+++ GY  +   + A  LF  M   G+  + V+  +
Sbjct: 326 RCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIAS 385

Query: 265 ILTACSHGGLVEKGKKYFDE-MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           IL  C+    +++GK++    M+ +  +   + +  +V++  R+G +  A ++  +L
Sbjct: 386 ILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSL 442



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 172/430 (40%), Gaps = 81/430 (18%)

Query: 40  LKALQLVREMPIHNEFPNSV----TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFL 95
           LKA +    + +H    N      +++++L +C     L  GK++HA  I  G    L L
Sbjct: 19  LKAFETFSLIKLHASSANRDAILHSISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVL 78

Query: 96  TNALTDMYAKCGCLNLAQNV-FNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154
              L   Y+    L  A  +  N    + + +N+LI  Y       E+LS + EM   G+
Sbjct: 79  VPKLVTFYSSFSLLADAHTITVNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGV 138

Query: 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT-HLFVANSILDFYTRSGRIDLAN 213
           + D  ++   + AC     +  G+E+H      + H  +L+V NS++  Y + G +D A 
Sbjct: 139 RPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAAR 198

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG------------------- 254
           ++F+ +P +D+ SWN +I  Y   G    A  LFE MR  G                   
Sbjct: 199 RLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTR 258

Query: 255 ----------------VGYDPVSYIAILTACSHGGLVEKG--------KKYFDEMQADSV 290
                           +  DPV+ I  L ACSH G ++ G        +  FD       
Sbjct: 259 NFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRN 318

Query: 291 KPTEMHYACM----VDLLGRA-------------------GLMEDAVKLIKNL---PVEP 324
               M+  C      D+L ++                      E+A  L + +    +EP
Sbjct: 319 ALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEP 378

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN----MYAEAGKWDEAS 380
           +     ++L  C    N++ G     H ++++ +    Y+LL N    MYA +GK   A 
Sbjct: 379 NYVTIASILPHCARVANLQQG--KEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAK 436

Query: 381 KVRELMKSRE 390
           +V + ++ R+
Sbjct: 437 RVFDSLRRRD 446


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 246/416 (59%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K    A A  +F  +  K+++SW  ++A +AQN    +AL+L+R++       +++ 
Sbjct: 257 MYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMM 316

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + + L AC+    L   KE+H   +++GL+ DL + N + D+YA CG +N A  +F +I 
Sbjct: 317 IGSTLLACSGLRCLSHAKEVHGYTLKRGLS-DLMMQNMIIDVYADCGNINYATRMFESIK 375

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+  +I  Y      +E+L +F  M+   ++ D ++ +  +SA A+L+A+ +GKE
Sbjct: 376 CKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKE 435

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG   RK         NS++D Y   G ++ A K+F C   K    W T+I  YGM G 
Sbjct: 436 IHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGR 495

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LF  M +  +  D ++++A+L ACSH GL+ +GK+  + M+    ++P   HYA
Sbjct: 496 GKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYA 555

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGRA  +E+A   +K++ +EP A +W A LGACRI+ N +LG  AA+ L  L P 
Sbjct: 556 CLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPD 615

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G Y+L+SN++A +G+W +  +VR  MK    KKNPGCSW++  ++V  F+V D+
Sbjct: 616 SPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDK 671



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 145/272 (53%), Gaps = 2/272 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKN-IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MYAK +    A  LF  + E+N +VSWN++++ ++ N   ++AL L REM       N+ 
Sbjct: 54  MYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTY 113

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL   L AC    F + G EIHA I++     D+++ NAL  M+ + G ++ A  +F+ +
Sbjct: 114 TLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDEL 173

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D +++N +I G++Q    +E+L  F  ++   +K D VS +  ++A   L  +  GK
Sbjct: 174 DEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGK 233

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           EIH   ++  L ++L + N+++D Y++   +  A  +FD +  KD  SW T+I  Y    
Sbjct: 234 EIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNN 293

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
               A+ L   ++  G+  D +   + L ACS
Sbjct: 294 CHTEALKLLRKVQTKGMDVDTMMIGSTLLACS 325



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 2/226 (0%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           +S T   VL AC     +  G EIH  II+ G +  +F+ N+L  MYAKC  +  A+ +F
Sbjct: 9   DSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLF 68

Query: 117 NI--SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           +      D VS+N +I  YS    C E+L LF EM+  G+  +  + + A+ AC + +  
Sbjct: 69  DRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFK 128

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           K G EIH   ++ +    ++VAN+++  + R G++  A +IFD L  KD+ +WN++I G+
Sbjct: 129 KLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGF 188

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
              G  + A+  F  +++  +  D VS I+IL A    G +  GK+
Sbjct: 189 TQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKE 234



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 10/192 (5%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           MR+LG+  D  +F   + AC  +  I +G EIHG+ I+    + +FVANS++  Y +   
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 209 IDLANKIFDCLPVK-DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
           I  A K+FD +  + D  SWN++I  Y + G+   A+ LF  M++ GVG +  + +A L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYA----CMVDLLGRAGLMEDAVKLIKNLPVE 323
           AC         KK   E+ A  +K  ++        +V +  R G M  A ++   L  E
Sbjct: 121 ACEDSSF----KKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELD-E 175

Query: 324 PDANIWGALLGA 335
            D   W +++  
Sbjct: 176 KDNITWNSMIAG 187


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 158/449 (35%), Positives = 252/449 (56%), Gaps = 37/449 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++     A  +F  + E    +WNAM++ +       +AL L R+M       + +T 
Sbjct: 233 YVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITY 292

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLN----FDLFLTNALTDMYAKCGCLNLAQNVF- 116
           T ++ ACA     + GK++HA I++  LN    F L ++NAL  +Y K   ++ A+ +F 
Sbjct: 293 TTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFY 352

Query: 117 -----NI--------------------SFRDE------VSYNILIVGYSQTSDCSESLSL 145
                NI                    SF +E      ++  ++I G +Q     E L L
Sbjct: 353 AMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKL 412

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           F +MRL G +    +F GA++AC+ L A++ G+++H   +     + L V N+++  Y +
Sbjct: 413 FKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAK 472

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
            G ++ A  +F  +P  D  SWN++I   G  G    AI LF+ M ++GV  D ++++ +
Sbjct: 473 CGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTV 532

Query: 266 LTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           LTACSH GLVEKG+ YF+ M ++  + P E HYA MVDL  RAG+   A  +I ++P +P
Sbjct: 533 LTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKP 592

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
            A +W ALL  CRI+GN++LG  AAE LF L PQ+ G Y+LLSN+YA+ G+W+E +KVR+
Sbjct: 593 GAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRK 652

Query: 385 LMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           LM+ +  +K P CSW++  ++V  F+V+D
Sbjct: 653 LMRDQAVRKEPACSWIEVENKVHVFMVDD 681



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 141/307 (45%), Gaps = 50/307 (16%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNA-------------------------------M 29
           +Y K+++  EA  +F+ +  +NI++WNA                               M
Sbjct: 337 LYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVM 396

Query: 30  VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
           ++  AQN    + L+L ++M +    P        L AC+    L  G+++HA+++  G 
Sbjct: 397 ISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGY 456

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
              L + NA+  MYAKCG +  A++VF  +   D VS+N +I    Q     +++ LF +
Sbjct: 457 ESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQ 516

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGK-------EIHGVTIRKHLHTHLFVANSILD 201
           M   G+  D ++F+  ++AC++   +++G+       E +G+T  +  +  +      +D
Sbjct: 517 MLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARM------VD 570

Query: 202 FYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGMLGEVDTAI----NLFEAMREDGVG 256
            + R+G    A  + D +P K  A  W  L+ G  + G +D  I     LF+ M ++   
Sbjct: 571 LFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGT 630

Query: 257 YDPVSYI 263
           Y  +S I
Sbjct: 631 YVLLSNI 637



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 136/333 (40%), Gaps = 62/333 (18%)

Query: 70  RGHFL--------RPGKEIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
           RGHFL        +    ++AR + + + N D      L   Y   G L L + +FN   
Sbjct: 47  RGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTP 106

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA-IKQ 176
           +  RD V YN +I GY+   D   +L LF  MR    + D  +F   +SA        +Q
Sbjct: 107 LYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQ 166

Query: 177 GKEIHGVTIRKHLH-THLFVANSILDFYT-RSGRIDL-------ANKIFDCLPVKDS--- 224
             ++H   ++  +      V N++L  Y  R+  + +       A K+FD +P +D    
Sbjct: 167 CGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTW 226

Query: 225 ----------------------------ASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
                                       A+WN +I GY   G    A+ L   MR  G+ 
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC------MVDLLGRAGLM 310
           +D ++Y  I++AC++ G  + GK+    +  + + P   H  C      ++ L  +   +
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQVHAYILKNELNPN--HSFCLSVSNALITLYCKNNKV 344

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           ++A K+   +PV  +   W A+L      G +E
Sbjct: 345 DEARKIFYAMPVR-NIITWNAILSGYVNAGRME 376


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/363 (40%), Positives = 220/363 (60%), Gaps = 4/363 (1%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           PN  T   ++ AC   + +  GK+IHA +++ G   D F  N L  MY     L  A+ V
Sbjct: 92  PNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRV 151

Query: 116 F-NISFRDE--VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
           F N+  RD   VS+N +I  Y Q++   E+ +LF  MRL  +  D       +SAC  L 
Sbjct: 152 FDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLG 211

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           A++QGK IHG   +  +     +A +++D Y + G ++ A+++F+ LP K  +SWN +I 
Sbjct: 212 ALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIG 271

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVK 291
           G  M G+ + AI LF+ M  + V  D ++++ +L+AC+H GLVE+GK YF  M +   +K
Sbjct: 272 GLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLK 331

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
           P   H+ CMVDLLGRAGL+E+A KLI  +PV PDA + GAL+GACRI+GN ELG    + 
Sbjct: 332 PGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKK 391

Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           +  L+P + G Y+LL+N+YA AG+W++ +KVR+LM  R  KK PG S +++   V +F+ 
Sbjct: 392 VIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIA 451

Query: 412 NDR 414
             R
Sbjct: 452 GGR 454



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 4/229 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEK--NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY       +A  +F N+ ++  N VSWNAM+A + Q+    +A  L   M + N   + 
Sbjct: 138 MYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDK 197

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
               ++L AC     L  GK IH  I + G+  D  L   + DMY KCGCL  A  VFN 
Sbjct: 198 FVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNE 257

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  +   S+N +I G +       ++ LF EM    +  D ++F+  +SACA+   +++G
Sbjct: 258 LPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEG 317

Query: 178 KE-IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
           K     +T    L   +     ++D   R+G ++ A K+ + +PV   A
Sbjct: 318 KHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDA 366



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 118/268 (44%), Gaps = 26/268 (9%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTS 137
           K+ H++IIR GL+ D    +A+  +   C                     I   GY +  
Sbjct: 37  KQYHSQIIRLGLSAD---NDAMGRVIKFCA--------------------ISKSGYLRWQ 73

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
                + ++S M    +  +  ++   I AC    AI++GK+IH   ++       F  N
Sbjct: 74  LARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLN 133

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKD--SASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
           +++  Y     ++ A ++FD +P +D  S SWN +I  Y     +  A  LF+ MR + V
Sbjct: 134 NLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENV 193

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
             D     ++L+AC+  G +E+GK     ++   ++        ++D+  + G +E A +
Sbjct: 194 VLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASE 253

Query: 316 LIKNLPVEPDANIWGALLGACRIYGNVE 343
           +   LP +   + W  ++G   ++G  E
Sbjct: 254 VFNELP-QKGISSWNCMIGGLAMHGKGE 280


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/415 (36%), Positives = 242/415 (58%), Gaps = 2/415 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K     E   LFH + E++ VS+N M+A +A NR     L+L REM   +    ++  
Sbjct: 285 YSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPY 344

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ-NVFNISF 120
            ++L        +  GK+IHA+++  GL+ +  + NAL DMY+KCG L+ A+ N  N + 
Sbjct: 345 ASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKND 404

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  VS+  +I G  Q     E+L LF  MR  G+  D  +F   I A +NLA I  G+++
Sbjct: 405 KTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQL 464

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   IR    + +F  +++LD YT+ G +D A + FD +P ++S SWN +I  Y   G+ 
Sbjct: 465 HSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQA 524

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             AI +FE M   G   D V+++++L+ACSH GL E+  KYF+ M+ +  + P + HY+C
Sbjct: 525 KNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSC 584

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           ++D LGR G  +   +++  +P E D  IW ++L +CR +GN +L   AAE LF +    
Sbjct: 585 VIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTD 644

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
              Y++LSN++A+AGKW++A+ V+++M+ R  +K  G SWV+ + +V  F  ND+
Sbjct: 645 ATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQ 699



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 164/351 (46%), Gaps = 11/351 (3%)

Query: 2   YAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQ--NRLELKALQLVREMPIHNEFPN 57
           Y++S + + A +LF +     ++ V+W  M+  FA         A+ L R+M      P+
Sbjct: 76  YSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPD 135

Query: 58  SVTLTNVL---PACARGHFLRPGKEIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQ 113
            VT+  VL   PA            +H   ++ GL + ++ + N L D Y K G L  A+
Sbjct: 136 RVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAAR 195

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
            VF  +  RD V+YN +++G S+    +E+L LF+ MR  G+     +F   ++    + 
Sbjct: 196 RVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVG 255

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
            +  G+++HG+  R    +++FV NS+LDFY++   +D   K+F  +  +D+ S+N +I 
Sbjct: 256 DLCLGRQVHGLVARA-TSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIA 314

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
           GY         + LF  M+        + Y ++L+       +  GK+   ++    +  
Sbjct: 315 GYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSS 374

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            ++    ++D+  + G+++ A     N   +   + W A++  C   G  E
Sbjct: 375 EDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVS-WTAMITGCVQNGQQE 424



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 141/329 (42%), Gaps = 55/329 (16%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A   F N  +K  VSW AM+    QN  + +ALQL   M      P+  T
Sbjct: 385 MYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRAT 444

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++ + A +    +  G+++H+ +IR G    +F  +AL DMY KCGCL+ A   F+ + 
Sbjct: 445 FSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMP 504

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ +S+N +I  Y+       ++ +F  M   G K D V+F+  +SAC++    ++  +
Sbjct: 505 ERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMK 564

Query: 180 I-------HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
                   +G++  K  ++       ++D   R GR D   ++   +P +D         
Sbjct: 565 YFELMEYEYGISPWKEHYS------CVIDTLGRVGRFDKVQEMLGEMPFED--------- 609

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC-SHGG--LVEKGKKYFDEMQADS 289
                                    DP+ + +IL +C +HG   L     +    M +  
Sbjct: 610 -------------------------DPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTD 644

Query: 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
             P    Y  + ++  +AG  EDA  + K
Sbjct: 645 ATP----YVILSNIFAKAGKWEDAAGVKK 669



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 101/196 (51%), Gaps = 9/196 (4%)

Query: 94  FLTNALTDMYAKCGCLNLAQNVFNIS---FRDEVSYNILIVGYSQT--SDCSESLSLFSE 148
           F  N +   Y++ G L+ A ++F  S    RD V++ ++I  ++    +  S+++SLF +
Sbjct: 67  FSLNRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRD 126

Query: 149 MRLLGMKHDVVSFMGAIS---ACANLAAIKQGKEIHGVTIR-KHLHTHLFVANSILDFYT 204
           M   G+  D V+    ++   A    AA      +H   ++   LH+++ V N++LD Y 
Sbjct: 127 MLREGVAPDRVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYC 186

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           + G +  A ++F  +P +DS ++N +++G    G    A++LF AMR  G+     ++  
Sbjct: 187 KHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFST 246

Query: 265 ILTACSHGGLVEKGKK 280
           +LT  +  G +  G++
Sbjct: 247 VLTVATGVGDLCLGRQ 262


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/404 (36%), Positives = 239/404 (59%), Gaps = 3/404 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           LF   A+K++VSW A++    +N   ++AL+   EM       + VT+ +VL A A    
Sbjct: 160 LFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRD 219

Query: 74  LRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
           +  G+ +H   +  G + +D+++ +AL DMY+KCG  + A  VFN +  R+ VS+  LI 
Sbjct: 220 VWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIA 279

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           GY Q +   E+L +F EM + G++ +  +   A++ACA L ++ QG+ +H    R  L  
Sbjct: 280 GYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGL 339

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
           +  +  +++D Y++ G +D A  +F+ LP KD   W  +I G  M G+  +++NLF  M 
Sbjct: 340 NSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMI 399

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLM 310
              V  + V+++ +L+AC+HGGLV++G + F  M  D  ++P   HY CMVDLLGRAG +
Sbjct: 400 RSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRL 459

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370
           E+A+K I+++P+EP   +WGAL   C I+   ELG     HL  L+P H G YILL+N+Y
Sbjct: 460 EEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLY 519

Query: 371 AEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +   KW+ A+ VR LMK +   K+P CSW++    + +F+  D+
Sbjct: 520 SRCQKWEAAANVRRLMKGKGVDKSPACSWIEVNGVIHEFIAFDK 563



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 165/330 (50%), Gaps = 4/330 (1%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           LF  +A   I  WN +V +F+ +      L     +  H   P+  T   +L A ++   
Sbjct: 60  LFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVG 132
             P  + +A I++ GL+FD F+ N+L   +A CG ++ ++ +F   + +D VS+  LI G
Sbjct: 120 ENP-FQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING 178

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK-HLHT 191
             +     E+L  F EMR  G++ D V+ +  + A A L  +  G+ +HG  +    +  
Sbjct: 179 CLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIW 238

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            ++V ++++D Y++ G  D A K+F+ +P ++  SW  LI GY        A+ +F+ M 
Sbjct: 239 DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI 298

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
            +G+  +  +  + LTAC+  G +++G+   + +    +         +VD+  + G ++
Sbjct: 299 IEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVD 358

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           +A+ + + LP + D   W A++    + G+
Sbjct: 359 EALLVFEKLPAK-DVYPWTAMINGLAMRGD 387



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 129/236 (54%), Gaps = 3/236 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +F+ +  +N+VSW A++A + Q     +AL++ +EM I    PN  T
Sbjct: 249 MYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQST 308

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +T+ L ACA+   L  G+ +H  + R  L  +  L  AL DMY+KCGC++ A  VF  + 
Sbjct: 309 VTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLP 368

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D   +  +I G +   D   SL+LFS+M    ++ + V+F+G +SACA+   + +G E
Sbjct: 369 AKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLE 428

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILG 233
           +  + I  + L  ++     ++D   R+GR++ A K  + +P++ +   W  L  G
Sbjct: 429 LFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSG 484


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 241/418 (57%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+    +A  LF  I E+N+ +WNA ++N   +    +A++   E       PNS+T
Sbjct: 152 MYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSIT 211

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
               L AC+ G  L  G ++H  + R G + D+ + N L D Y KC  +  ++ +F  + 
Sbjct: 212 FCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMG 271

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+  L+  Y Q  +  ++  L+   R   ++         +SACA +A ++ G+ 
Sbjct: 272 MKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRS 331

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   ++  +  ++FV ++++D Y + G I+ + + FD +P K+  + N+LI GY   G+
Sbjct: 332 IHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQ 391

Query: 240 VDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           VD A+ LFE M   G G  P  ++++++L+ACS  G VE G K FD M++   ++P   H
Sbjct: 392 VDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEH 451

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y+C+VD+LGRAG++E A + IK +P++P  ++WGAL  ACR++G   LG  AAE+LF L 
Sbjct: 452 YSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLD 511

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P+  G ++LLSN +A AG+W EA+ VRE MK    KK  G SW+  +++V  F   DR
Sbjct: 512 PKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDR 569



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 182/395 (46%), Gaps = 11/395 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K   P  A  +      +N+VSW ++V+  AQN     AL    EM      PN  T
Sbjct: 51  MYSKLDHPESARLVLRLTPARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFT 110

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V  A A       GK+IHA  ++ G   D+F+  +  DMY K    + A+ +F+ I 
Sbjct: 111 FPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 170

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+  ++N  I          E++  F E R +G + + ++F G ++AC++   +  G +
Sbjct: 171 ERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQ 230

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+  R    T + V N ++DFY +  +I  +  IF  + +K++ SW +L+  Y    E
Sbjct: 231 MHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHE 290

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A  L+   R++ V        ++L+AC+    +E G+          V+      + 
Sbjct: 291 DEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSA 350

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VD+ G+ G +ED+ +    +P E +     +L+G     G V++     E    + P+ 
Sbjct: 351 LVDMYGKCGCIEDSEQAFDEMP-EKNLVTLNSLIGGYAHQGQVDMALALFED---MAPRG 406

Query: 360 CG------YYILLSNMYAEAGKWDEASKVRELMKS 388
           CG       ++ L +  + AG  +   K+ + MKS
Sbjct: 407 CGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKS 441



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 122/267 (45%), Gaps = 9/267 (3%)

Query: 74  LRPGKEIHARIIRKGLNFDL----FLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNI 128
           +R G+ +HARI++     D     FL N L +MY+K      A+ V  ++  R+ VS+  
Sbjct: 22  MRLGRVVHARIVK---TLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTS 78

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           L+ G +Q    S +L  F EMR  G+  +  +F     A A+L     GK+IH + ++  
Sbjct: 79  LVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCG 138

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
               +FV  S  D Y ++   D A K+FD +P ++  +WN  I      G    AI  F 
Sbjct: 139 RILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFI 198

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
             R  G   + +++   L ACS G L++ G +    +           Y  ++D  G+  
Sbjct: 199 EFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCK 258

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGA 335
            +  +  +   + ++ +A  W +L+ A
Sbjct: 259 QIRSSEIIFAEMGMK-NAVSWCSLVAA 284


>gi|255564460|ref|XP_002523226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537522|gb|EEF39147.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 488

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 155/410 (37%), Positives = 238/410 (58%), Gaps = 7/410 (1%)

Query: 1   MYAKSSR--PAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PN 57
           MY+  +R  P   S  FH +  KNI SWN ++  FA++ L  K++ L  +M   + F P+
Sbjct: 78  MYSHHNRLTPHSLSTFFH-MPCKNIYSWNIIIGEFARSNLPEKSVDLFIDMRRDSHFQPD 136

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             +L  VL ACA     + G  +H   ++ GL   LF+ +AL  MY   G ++ A+ VF+
Sbjct: 137 DFSLPLVLRACAGSGLGKLGSSVHGLCVKMGLAVSLFVGSALVFMYVTFGNVSNARVVFD 196

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFMGAISACANLAAI 174
            ++ RD V +  L+ GY+Q  +    L +F EM      +K D V  +  +  C  L ++
Sbjct: 197 EMAKRDSVLWTALLSGYAQNGEPKLGLQVFREMVDNSTRVKLDWVVMVSLLLVCGQLGSL 256

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           K GK +HG  +R  L   L + N+I+  Y + G +  A++ FD +P +D  SW++LILGY
Sbjct: 257 KHGKSVHGWCVRNCLRLELSLGNAIVHMYIKCGMLAYAHRFFDKMPERDVFSWSSLILGY 316

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
           G+ G V  A+ LF+ M   G+  + V+++ IL+AC HGGLVE+ + YF  MQ   +    
Sbjct: 317 GLSGNVSVALCLFDQMHMRGIKPNDVTFLGILSACGHGGLVEQARSYFKMMQNYGLVAEL 376

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYA +VD L RAG  E+A K I ++P+EPD  + GA+L  CR++ NVE+G   A+ L  
Sbjct: 377 RHYATIVDCLARAGRFEEAEKFISDIPMEPDEAVLGAILAGCRVHNNVEVGERIAKRLIR 436

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRD 404
           LKP+  GYY+LL+NMYA  G++ EA  VR+ M+ +   K PGCS ++++ 
Sbjct: 437 LKPEKAGYYVLLANMYAGVGRFHEAEMVRDSMQEKNMSKVPGCSLLESKS 486



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 148/318 (46%), Gaps = 9/318 (2%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCL--NLAQNVFNISFRDEVSYNILIVGYSQ 135
           + +HAR++R  L  ++ L++ L  MY+    L  +     F++  ++  S+NI+I  +++
Sbjct: 54  RHLHARLLRTSLYDNVVLSSKLVLMYSHHNRLTPHSLSTFFHMPCKNIYSWNIIIGEFAR 113

Query: 136 TSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
           ++   +S+ LF +MR     + D  S    + ACA     K G  +HG+ ++  L   LF
Sbjct: 114 SNLPEKSVDLFIDMRRDSHFQPDDFSLPLVLRACAGSGLGKLGSSVHGLCVKMGLAVSLF 173

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           V ++++  Y   G +  A  +FD +  +DS  W  L+ GY   GE    + +F  M ++ 
Sbjct: 174 VGSALVFMYVTFGNVSNARVVFDEMAKRDSVLWTALLSGYAQNGEPKLGLQVFREMVDNS 233

Query: 255 --VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
             V  D V  +++L  C   G ++ GK        + ++        +V +  + G++  
Sbjct: 234 TRVKLDWVVMVSLLLVCGQLGSLKHGKSVHGWCVRNCLRLELSLGNAIVHMYIKCGMLAY 293

Query: 313 AVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--LKPQHCGYYILLSNMY 370
           A +    +P E D   W +L+    + GNV +     + + M  +KP    +  +LS   
Sbjct: 294 AHRFFDKMP-ERDVFSWSSLILGYGLSGNVSVALCLFDQMHMRGIKPNDVTFLGILSAC- 351

Query: 371 AEAGKWDEASKVRELMKS 388
              G  ++A    ++M++
Sbjct: 352 GHGGLVEQARSYFKMMQN 369


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 160/419 (38%), Positives = 244/419 (58%), Gaps = 14/419 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A   F  + E+++VSWNAM++ +AQN L  +AL+L  EM      P+  T 
Sbjct: 204 YAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTW 263

Query: 62  TNVLPACARGHFLRPGKEIHARIIR----KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             V+ AC+     R    + A ++R    K +  + F+  AL DMYAK G L+ A+ +FN
Sbjct: 264 VTVISACSS----RGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFN 319

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIK 175
            +  R+ V++N +I GY+Q    + ++ LF EM     +  D V+ +  ISAC +L A++
Sbjct: 320 TMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALE 379

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G  +        +   +   N+++  Y+R G ++ A ++F  +  +D  S+NTLI G+ 
Sbjct: 380 LGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFA 439

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G    AINL   M+E G+  D V++I +LTACSH GL+E+G+K F+ ++     P   
Sbjct: 440 AHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK----DPAID 495

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYACMVDLLGR G +EDA + ++ +P+EP A ++G+LL A RI+  VELG  AA  LF L
Sbjct: 496 HYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFEL 555

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +P + G +ILLSN+YA AG+W +  ++RE MK    KK  G SWV+   ++  F+V DR
Sbjct: 556 EPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADR 614



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MYAK      A  LF+ +  +N+V+WN+M+A +AQN     A++L +EM    +  P+ V
Sbjct: 304 MYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEV 363

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T+ +V+ AC     L  G  +   +    +   +   NA+  MY++CG +  A+ VF  +
Sbjct: 364 TMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 423

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + RD VSYN LI G++      E+++L S M+  G++ D V+F+G ++AC++   +++G+
Sbjct: 424 ATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGR 483

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
           ++   +I+     H      ++D   R G ++ A +  + +P++  A
Sbjct: 484 KVFE-SIKDPAIDHY---ACMVDLLGRVGELEDAKRTMERMPMEPHA 526



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/479 (20%), Positives = 189/479 (39%), Gaps = 108/479 (22%)

Query: 8   PAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPA 67
           P     LF++    N+  + +M+  ++  +   K + +  +M      P++     ++ +
Sbjct: 50  PHYTHLLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKS 109

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------- 117
              G     G   HA +++ G   D F+ NA+ DMYA+ G +  A+ VF+          
Sbjct: 110 AGTG-----GIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVA 164

Query: 118 ------------------------ISFRDEVSYNILIVGYSQTSD--------------- 138
                                   +  R+ +++  ++ GY++  D               
Sbjct: 165 DWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERS 224

Query: 139 ----------------CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
                             E+L LF EM   G++ D  +++  ISAC++         +  
Sbjct: 225 VVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVR 284

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
              +K +  + FV  ++LD Y + G +D A K+F+ +P ++  +WN++I GY   G+   
Sbjct: 285 TLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAM 344

Query: 243 AINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
           AI LF+ M     +  D V+ +++++AC H G +E G      +  + +K +   +  M+
Sbjct: 345 AIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMI 404

Query: 302 DLLGRAGLMEDAVKLIKNLP----------------------------------VEPDAN 327
            +  R G MEDA ++ + +                                   +EPD  
Sbjct: 405 FMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRV 464

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
            +  +L AC   G +E G    E    +K     +Y  + ++    G+ ++A +  E M
Sbjct: 465 TFIGVLTACSHAGLLEEGRKVFES---IKDPAIDHYACMVDLLGRVGELEDAKRTMERM 520


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 141/418 (33%), Positives = 248/418 (59%), Gaps = 7/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K+  P  +  +F    +K+  +W+++++ FAQN   L ALQ  R M      P+   
Sbjct: 69  LYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHI 128

Query: 61  LTNVLPACARGHFLRP---GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             +   AC    FLR    GK +H   ++ G   D+F+ ++L DMYAKCG +  A+++F+
Sbjct: 129 YPSATKACG---FLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFD 185

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  R+ VS++ +I GY+Q  D  E+L+LF +  +  +  +  +F   I  C++   ++ 
Sbjct: 186 EMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLEL 245

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK IHG+ ++    +  FV ++++  Y++ G I+ A ++FD +P ++   WN++++    
Sbjct: 246 GKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQ 305

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
                    LFE M   G+  + +S++++L ACSH GLVEKG++YF  M+   ++P   H
Sbjct: 306 HAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEH 365

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YA +VDLLGRAG +++AV +IK +P+ P  ++WGALL  CRI+ + E+ A+ A+ +  + 
Sbjct: 366 YASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMD 425

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               G ++LLSN YA AG+++EA+++R++++ R  KK  G SWV+  ++V  F   DR
Sbjct: 426 SSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDR 483



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 139/295 (47%), Gaps = 9/295 (3%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N   + N+L +  R   LR G ++HA I++ GL     +++ L ++Y+K      +  VF
Sbjct: 24  NYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVF 83

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           +    +   +++ +I  ++Q      +L  F  M   G++ D   +  A  AC  L    
Sbjct: 84  DETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSD 143

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK +H + ++   +  +FV +S++D Y + G I  A  +FD +P ++  SW+ +I GY 
Sbjct: 144 VGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYA 203

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
            L +   A+ LF+    + V  +  ++ +++  CS    +E GK         S   +  
Sbjct: 204 QLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSF 263

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC-------RIYGNVE 343
             + ++ L  + G++E A ++   +P   +  +W ++L AC       R++G  E
Sbjct: 264 VGSALISLYSKCGVIEGAYQVFDEIPTR-NLGLWNSMLIACAQHAHTQRVFGLFE 317


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 146/409 (35%), Positives = 240/409 (58%), Gaps = 7/409 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPI-HNEFPNSV 59
           M+ ++    +A  LF  + E + + W ++++   +N    +AL+    M   H   P+  
Sbjct: 264 MHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGF 323

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   VL AC     L+ GKE+HA++I  G   ++ + ++L DMY KCG +  +Q +F+ +
Sbjct: 324 TFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRM 383

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             ++ VS++ L+ GY Q  D    + +F +M     K D+  F   +  CA LAA++QGK
Sbjct: 384 PIKNSVSWSALLGGYCQNGDFKSVIQIFRKME----KVDLYCFGTILRTCAGLAAVRQGK 439

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+H   IRK     + V ++++D Y + G I+ A  IFD +PV++  +WN++I G+   G
Sbjct: 440 EVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNG 499

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
             + A+ +F  M ++G+  D +S+I IL ACSH GLV++G++YF  M  D  +K    HY
Sbjct: 500 RGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHY 559

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +CMVDLLGRAGL+E+A  LI+      D+++W ALLGAC    N E+    A+ +  L+P
Sbjct: 560 SCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEP 619

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEV 406
            +   Y+LL+N+Y   G+W++A ++R LMK R   K PG SW++T++ +
Sbjct: 620 DYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIETKNNL 668



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 165/328 (50%), Gaps = 7/328 (2%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           E   +F  +  K+++SW +M++ + +    + +L+L  +M  +   PN+ TL+ V+ AC+
Sbjct: 172 ETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACS 231

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNI 128
               L+ G+  H  ++ +G + +  + +AL DM+ +   L+ A+ +F+     D + +  
Sbjct: 232 ELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTS 291

Query: 129 LIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
           +I   ++     E+L  F  M R  GM  D  +F   ++AC NL  +KQGKE+H   I  
Sbjct: 292 IISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITT 351

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
               ++ V +S++D Y + G +  + +IFD +P+K+S SW+ L+ GY   G+  + I +F
Sbjct: 352 GFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIF 411

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
             M +     D   +  IL  C+    V +GK+   +          +  + +VDL  + 
Sbjct: 412 RKMEK----VDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKC 467

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGA 335
           G +E A  +   +PV  +   W +++G 
Sbjct: 468 GCIEYAQTIFDQMPVR-NLITWNSMIGG 494



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 152/297 (51%), Gaps = 4/297 (1%)

Query: 42  ALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101
           ALQL++ +         V   ++L  C +      G +IHA +I+ GL FD F+ N+L  
Sbjct: 102 ALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLT 161

Query: 102 MYAKCGC-LNLAQNVFNISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
           +Y K G      + VF+  F +D +S+  +I GY +      SL LF +M   G++ +  
Sbjct: 162 LYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAF 221

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           +    I AC+ L  +K G+  HGV + +   ++  +A++++D + R+  +D A ++FD L
Sbjct: 222 TLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDEL 281

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMRED-GVGYDPVSYIAILTACSHGGLVEKG 278
              D+  W ++I         D A+  F +M+ D G+  D  ++  +LTAC + G +++G
Sbjct: 282 LEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQG 341

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           K+   ++         +  + +VD+ G+ G + ++ ++   +P++   + W ALLG 
Sbjct: 342 KEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVS-WSALLGG 397



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 2/207 (0%)

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I+   ++ + S +L L   +    +    V +   +  C  + A   G +IH   I+  L
Sbjct: 90  ILQLCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGL 149

Query: 190 HTHLFVANSILDFYTRSGR-IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
               FV NS+L  Y + G       K+FD L VKD  SW ++I GY  +G+   ++ LF 
Sbjct: 150 EFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFW 209

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            M   GV  +  +  A++ ACS  G ++ G+ +   +         +  + ++D+ GR  
Sbjct: 210 KMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNC 269

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGA 335
            ++DA +L   L +EPDA  W +++ A
Sbjct: 270 ALDDARQLFDEL-LEPDAICWTSIISA 295


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 156/438 (35%), Positives = 244/438 (55%), Gaps = 25/438 (5%)

Query: 1   MYAKSSRPAEASYLFHNI--AEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPN 57
           MYA   R   A  +F  +   E+ +  WNAM+  +AQ  L+  AL+L   M       P+
Sbjct: 314 MYASHERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPS 373

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF- 116
             T+  VLP+CAR       + +H  ++++G+  + F+ NAL D+YA+ G ++ A+ +F 
Sbjct: 374 ETTIAGVLPSCARSETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWIFA 433

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV------------------ 158
            I  RD VS+N LI G        ++  L  EM+  G   D                   
Sbjct: 434 TIEPRDVVSWNTLITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVVPNN 493

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
           ++ M  +  CA LAA  +GKEIHG  +R  L + + V ++++D Y + G + L+  +FD 
Sbjct: 494 ITLMTLLPGCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRAVFDR 553

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEK 277
           LP ++  +WN LI+ YGM G  D AI LF+ M   D    + V++IA L ACSH G+V++
Sbjct: 554 LPRRNVITWNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGMVDR 613

Query: 278 GKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGA 335
           G + F  M+ +  V+PT   +AC VD+LGRAG +++A ++I ++ P E   + W + LGA
Sbjct: 614 GLEMFRSMKRNHGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWSSFLGA 673

Query: 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395
           CR++ NV LG  AAE LF L+P    +Y+LL N+Y+ AG W+++S+VR  M+ R   K P
Sbjct: 674 CRLHRNVALGEIAAERLFELEPDEASHYVLLCNIYSAAGLWEKSSEVRSRMRQRGVSKEP 733

Query: 396 GCSWVQTRDEVQDFVVND 413
           GCSW++    +  F+  +
Sbjct: 734 GCSWIELDGVIHRFMAGE 751



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 172/366 (46%), Gaps = 38/366 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+      A  LF  +  ++ V++N+++A     R  L AL  +R+M +      S TL
Sbjct: 104 YARCGDLTAALALFDAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTL 163

Query: 62  TNVLPACAR-GHFLRPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVF-- 116
            +VL AC+     LR G+E HA  ++ G     + F  NAL  MYA+ G ++ AQ +F  
Sbjct: 164 VSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGS 223

Query: 117 ----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
               ++     V++N ++    Q+  C E++ +  +M   G++ D V+F  A+ AC+ L 
Sbjct: 224 VGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLE 283

Query: 173 AIKQGKEIHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNT 229
            +  G+E+H   ++   L  + FVA++++D Y    R+  A  +FD +P   +    WN 
Sbjct: 284 MLSLGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNA 343

Query: 230 LILGYGMLGEVDTAINLFEAMR-EDGVGYDPVSYIAILTACS-----------HGGLVEK 277
           +I GY   G  + A+ LF  M  E GV     +   +L +C+           HG +V++
Sbjct: 344 MICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKR 403

Query: 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP-DANIWGALLGAC 336
           G      +Q             ++DL  R G M+ A  +     +EP D   W  L+  C
Sbjct: 404 GMADNPFVQ-----------NALMDLYARLGDMDAARWIFAT--IEPRDVVSWNTLITGC 450

Query: 337 RIYGNV 342
            + G++
Sbjct: 451 VVQGHI 456



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 172/368 (46%), Gaps = 29/368 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNI-----VSWNAMVANFAQNRLELKALQLVREMPIHNEF 55
           MYA+     +A  LF ++   ++     V+WN MV+   Q+    +A++++ +M      
Sbjct: 207 MYARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVR 266

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQN 114
           P+ VT  + LPAC++   L  G+E+HA +++   L  + F+ +AL DMYA    +  A+ 
Sbjct: 267 PDGVTFASALPACSQLEMLSLGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARL 326

Query: 115 VFNISFRDEVS---YNILIVGYSQTSDCSESLSLFSEMRL-LGMKHDVVSFMGAISACAN 170
           VF++    E     +N +I GY+Q     ++L LF+ M    G+     +  G + +CA 
Sbjct: 327 VFDMVPAGERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCAR 386

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
                  + +HG  +++ +  + FV N+++D Y R G +D A  IF  +  +D  SWNTL
Sbjct: 387 SETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWIFATIEPRDVVSWNTL 446

Query: 231 ILGYGMLGEVDTAINLFEAMR----------EDGV-GYDP-------VSYIAILTACSHG 272
           I G  + G +  A  L   M+          EDG+ G D        ++ + +L  C+  
Sbjct: 447 ITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVVPNNITLMTLLPGCAML 506

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
               +GK+        ++       + +VD+  + G +  +  +   LP   +   W  L
Sbjct: 507 AAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRAVFDRLP-RRNVITWNVL 565

Query: 333 LGACRIYG 340
           + A  ++G
Sbjct: 566 IMAYGMHG 573



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 15/229 (6%)

Query: 78  KEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYS 134
           + IH   +R  L       ++NAL   YA+CG L  A  +F+ +  RD V++N LI    
Sbjct: 77  RSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAALALFDAMPSRDAVTFNSLIAALC 136

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA-IKQGKEIHGVTIRKHL--HT 191
                  +L    +M L G      + +  + AC++LA  ++ G+E H   ++       
Sbjct: 137 LFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGD 196

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKD-----SASWNTLILGYGMLGEVDTAINL 246
             F  N++L  Y R G +D A  +F  +   D       +WNT++      G    AI +
Sbjct: 197 ERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEV 256

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
              M   GV  D V++ + L ACS   ++  G+    EM A  +K  ++
Sbjct: 257 LYDMVARGVRPDGVTFASALPACSQLEMLSLGR----EMHAYVLKDADL 301



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 11/165 (6%)

Query: 164 AISACANLAAIKQGKEIHGVTIRKHL--HTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
           A  + A L ++   + IHG  +R  L       V+N++L  Y R G +  A  +FD +P 
Sbjct: 63  AAKSAAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAALALFDAMPS 122

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
           +D+ ++N+LI    +      A++    M  +G      + +++L ACSH   + +  + 
Sbjct: 123 RDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSH---LAEDLRL 179

Query: 282 FDEMQADSVK------PTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
             E  A ++K           +  ++ +  R GL++DA  L  ++
Sbjct: 180 GREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSV 224


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 167/433 (38%), Positives = 254/433 (58%), Gaps = 34/433 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEK----NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           Y+++ R  +A  LF  + E+    ++V+W+++++ +AQ     +A+ + R+M      PN
Sbjct: 307 YSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPN 366

Query: 58  SVTLTNVLPACARGHFLRPGKEIH---ARIIRKGLNFD----LFLTNALTDMYAKCGCLN 110
            VTL ++L ACA    L  GKE H    + I KG + D    L + NAL DMYAKC  L 
Sbjct: 367 VVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLE 426

Query: 111 LAQNVFN---ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS- 166
           +A+ +F+      RD V++ ++I GY+Q  D + +L LFSEM    + + +V     IS 
Sbjct: 427 VARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEM--FKIDNCIVPNDFTISC 484

Query: 167 ---ACANLAAIKQGKEIHGVTIRKHL--HTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
              ACA LAA+K GK+IH   +R+       LFVAN ++D Y++SG +D A  +FD +  
Sbjct: 485 VLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSK 544

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
           +++ SW +L+ GYGM G  + A  +F+ MR++ +  D ++++ +L ACSH G+       
Sbjct: 545 RNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM------- 597

Query: 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
                   V P   HYACMVDLLGRAG + +A++LI ++P+EP   +W ALL ACRI+ N
Sbjct: 598 -----DFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSN 652

Query: 342 VELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQ 401
            EL  +AA+ L  LK  + G Y LLSN+YA A +W + +++  LMK    KK PG SWV+
Sbjct: 653 EELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVK 712

Query: 402 TRDEVQDFVVNDR 414
            R  ++ F V DR
Sbjct: 713 GRKGMETFYVGDR 725



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 141/279 (50%), Gaps = 5/279 (1%)

Query: 19  AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78
           +  ++  WN ++ +         AL+L R M   +  P+  T   V  AC        G 
Sbjct: 87  SHSSVYWWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGA 146

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR---DEVSYNILIVGYS 134
            IH  +IR G   ++F+ NA+  MY KC  +  A+ VF+ + +R   D V++N ++  YS
Sbjct: 147 SIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYS 206

Query: 135 QTSDCSESLSLFSEMRL-LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
                + ++SLF EM +  G+  D V  +  +  C  L     G+++HG  +R  L   +
Sbjct: 207 HCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDV 266

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
           FV N+++D Y + G+++ ANK+F+ +  KD  +WN ++ GY   G  + A++LF  MRE+
Sbjct: 267 FVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREE 326

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
            +  D V++ ++++  +  G   +    F +M     +P
Sbjct: 327 KIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRP 365



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 104/257 (40%), Gaps = 76/257 (29%)

Query: 142 SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201
           +L LF  M+ L    D  +F     AC  ++  + G  IHG  IR    +++FV N+++ 
Sbjct: 110 ALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVIS 169

Query: 202 FYTRSGRIDLANKIFDCLPVK---DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY- 257
            Y +   +  A K+FD L  +   DS +WN+++  Y      + A++LF   RE  VGY 
Sbjct: 170 MYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLF---REMTVGYG 226

Query: 258 ---DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
              D V  + IL  C + GL   G+              ++H  C+     R+GL+ED  
Sbjct: 227 ILPDTVGVVNILPVCGYLGLGLCGR--------------QVHGFCV-----RSGLVEDV- 266

Query: 315 KLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374
                                    GN                        L +MYA+ G
Sbjct: 267 -----------------------FVGNA-----------------------LVDMYAKCG 280

Query: 375 KWDEASKVRELMKSREA 391
           K ++A+KV E M+ ++ 
Sbjct: 281 KMEDANKVFERMRFKDV 297


>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 752

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 149/420 (35%), Positives = 252/420 (60%), Gaps = 8/420 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP---N 57
           MY  S  P EA  +F +++EKN++SW A+++ ++++    KA+     + +H+E     +
Sbjct: 313 MYGNSGMPKEAERMFSSMSEKNLISWTALISGYSRSGYGKKAVDAF--LGLHDELGINFD 370

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           S  LT +L  C+  + L  G +IH  +++ G   D+ +  AL D+YAKC  L  A+ VF+
Sbjct: 371 STLLTAILDCCSDCNNLELGLQIHGFVMKLGCACDVNVATALVDLYAKCEKLQSARIVFD 430

Query: 118 -ISFRDEVSYNILIVGYSQTS-DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
            +S +   S+N ++ G+ ++S D  + + LF+++RL G+K D+V+F   +S  AN A+++
Sbjct: 431 HLSNKGIASFNAILAGFLESSGDEEDPMILFNQLRLAGVKPDMVTFSRLLSLLANQASLE 490

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           +G+  H  T++    T++ VANS++  Y + G I+ A+++F+ +  +DS SWN LI  Y 
Sbjct: 491 KGRSFHAYTVKTGFDTNISVANSVISMYAKCGSIEDAHQMFNIMNCRDSISWNALISAYA 550

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
           + G+   ++ LFE M+  G   D  + +AIL AC++ GL + G   F+ M+    +KP  
Sbjct: 551 LHGQAQKSLFLFEEMKRKGFDPDEFTILAILQACTYSGLWKDGICLFNLMEPKYGIKPLL 610

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYACM DLLGRAG + +A+ +IK  P      +W  L+  C+++GN+  G  A++HL  
Sbjct: 611 EHYACMADLLGRAGYLSEAMDIIKRSPFPKSTLLWRTLVNVCKLHGNLNFGKLASKHLLD 670

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           L P   G YIL+SNMYA     DEA+KVR++M   + +K  G SW++  ++V  FV +D+
Sbjct: 671 LSPVEAGSYILVSNMYASEKMSDEAAKVRKVMNDLKFRKEAGSSWIEIDNKVHHFVASDK 730



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 136/280 (48%), Gaps = 2/280 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K +R   A  +F  +  +N ++W +++  + ++     A  +  +M    E  N  T
Sbjct: 111 LYVKFNRLDLAQKVFDRMRTRNTITWTSLIKGYLEDNDFQSAFSIAGDMHKFGENFNEHT 170

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T +L AC+       G++IH  +I+ G + ++F+  +L  MY K G  ++A+ VF+ + 
Sbjct: 171 CTVILQACSSPDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKSGFFDVAEKVFDSMG 230

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           F+D    N +I+ Y +  +  +++ +F  +   G +    +F   IS C     +++GK+
Sbjct: 231 FKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFTNIISTCNGDLGVEEGKQ 290

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           + G+  +    +   V N+I+  Y  SG    A ++F  +  K+  SW  LI GY   G 
Sbjct: 291 LQGLAFKYGFLSETSVGNAIITMYGNSGMPKEAERMFSSMSEKNLISWTALISGYSRSGY 350

Query: 240 VDTAINLFEAMRED-GVGYDPVSYIAILTACSHGGLVEKG 278
              A++ F  + ++ G+ +D     AIL  CS    +E G
Sbjct: 351 GKKAVDAFLGLHDELGINFDSTLLTAILDCCSDCNNLELG 390



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 145/316 (45%), Gaps = 38/316 (12%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           G+ +H+ +++ G   D F  N + ++Y K   L+LAQ VF+ +  R+ +++  LI GY +
Sbjct: 86  GQAVHSYLVKAGSQDDTFKGNNVLNLYVKFNRLDLAQKVFDRMRTRNTITWTSLIKGYLE 145

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
            +D   + S+  +M   G   +  +    + AC++      G++IH   I+     ++FV
Sbjct: 146 DNDFQSAFSIAGDMHKFGENFNEHTCTVILQACSSPDDRILGEQIHCFVIKSGFDENVFV 205

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
             S++  YT+SG  D+A K+FD +  KD    N +IL YG  G    AI +F+ +  DG 
Sbjct: 206 GTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDGF 265

Query: 256 GYDPVSYIAILTACSHGGLVEKGKK---------YFDE---------MQADSVKPTE--- 294
                ++  I++ C+    VE+GK+         +  E         M  +S  P E   
Sbjct: 266 EPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGFLSETSVGNAIITMYGNSGMPKEAER 325

Query: 295 ----------MHYACMVDLLGRAGLMEDAVK----LIKNLPVEPDANIWGALLGACRIYG 340
                     + +  ++    R+G  + AV     L   L +  D+ +  A+L  C    
Sbjct: 326 MFSSMSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAILDCCSDCN 385

Query: 341 NVELGAWAAEHLFMLK 356
           N+ELG     H F++K
Sbjct: 386 NLELGLQI--HGFVMK 399


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/415 (36%), Positives = 243/415 (58%), Gaps = 3/415 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP-IHNEFPNSVT 60
           YAK     EA  LF  + E++  SW AM++ + ++    +AL+L R M    N   N  T
Sbjct: 146 YAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFT 205

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +++ L A A    LR GKEIH  I+R GL+ D  + +AL+DMY KCG +  A+++F+ + 
Sbjct: 206 VSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMV 265

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++  +I  Y Q     E   LF+++   G++ +  +F G ++ACAN  + + GK+
Sbjct: 266 DRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKK 325

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG   R       F A++++  Y++ G +  A ++F   P  D  SW +LI GY   G+
Sbjct: 326 VHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQ 385

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            D AI  FE + + G   D ++++ +L+AC+H GLV+KG  YF  ++    +  T  HYA
Sbjct: 386 PDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYA 445

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C++DLL R+G  ++A  +I  + ++PD  +W +LLG CRI+GN++L   AAE LF ++P+
Sbjct: 446 CIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPE 505

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +   Y+ L+N+YA AG W E +K+R+ M  R   K PG SW+  + +V  F+V D
Sbjct: 506 NPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGD 560



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 154/334 (46%), Gaps = 39/334 (11%)

Query: 35  QNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF 94
           QNRL+ +ALQ++ ++    + P++   + ++ +C +   L+ GK++H  I   G    LF
Sbjct: 52  QNRLK-EALQILHQI----DKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLF 106

Query: 95  LTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM---- 149
           + N L +MYAKC  L  +Q +F+ +  RD  S+NILI GY++     E+ SLF +M    
Sbjct: 107 ILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERD 166

Query: 150 ------------------------RLLGMKHDVVSFMGAISA----CANLAAIKQGKEIH 181
                                   R++    +  S    +S+     A +  ++ GKEIH
Sbjct: 167 NFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIH 226

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
           G  +R  L +   V +++ D Y + G I+ A  IFD +  +D  +W  +I  Y   G   
Sbjct: 227 GYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRK 286

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
              +LF  +   G+  +  ++  +L AC++    E GKK    M      P     + +V
Sbjct: 287 EGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALV 346

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            +  + G M  A ++ K  P +PD   W +L+  
Sbjct: 347 HMYSKCGNMVSAERVFKETP-QPDLFSWTSLIAG 379



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 143/296 (48%), Gaps = 19/296 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA ++F  + +++IV+W AM+  + Q+    +   L  ++      PN  T
Sbjct: 247 MYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFT 306

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            + VL ACA       GK++H  + R G +   F  +AL  MY+KCG +  A+ VF  + 
Sbjct: 307 FSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETP 366

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
           + D  S+  LI GY+Q     E++  F  +   G + D ++F+G +SACA+   + +G  
Sbjct: 367 QPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLD 426

Query: 178 -----KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
                KE +G+T     HT    A  I+D   RSG+ D A  I   + +K D   W +L+
Sbjct: 427 YFHSIKEQYGLT-----HTADHYA-CIIDLLARSGQFDEAENIISKMSMKPDKFLWASLL 480

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL---VEKGKKYFDE 284
            G  + G +  A    EA+ E     +P +Y+ +    +  G+   V K +K  D+
Sbjct: 481 GGCRIHGNLKLAQRAAEALFEIE-PENPATYVTLANIYATAGMWSEVAKIRKTMDD 535


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/417 (35%), Positives = 240/417 (57%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K+    EA  +F  + E+NI +WNA ++N         AL    E       PN +T
Sbjct: 152 MYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLIT 211

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
               L ACA   +LR G+++H  +++ G   D+ + N L D Y KC  +  ++ +F+ IS
Sbjct: 212 FCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGIS 271

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             ++VS+  +IV Y Q  +  ++  +F   R  G++         +SACA L+ ++ GK 
Sbjct: 272 KPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKS 331

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + ++  +  ++FV ++++D Y + G I+ A + FD +P ++  +WN +I GY   G+
Sbjct: 332 VHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQ 391

Query: 240 VDTAINLFEAMR--EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
            D A+ LF+ M      V  + V+++ +L+ACS  G V  G + F+ M+    ++P   H
Sbjct: 392 ADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEH 451

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YAC+VDLLGRAG++E A + IK +P+ P  ++WGALLGA +++G  ELG  AA++LF L 
Sbjct: 452 YACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELD 511

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P   G ++LLSNM+A AG+W+EA+ VR+ MK    KK  GCSW+   + V  F   D
Sbjct: 512 PLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKD 568



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 185/396 (46%), Gaps = 11/396 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  RP  A  L      +++V+W A++A   QN     AL     M   +  PN  T
Sbjct: 51  MYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFT 110

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
                 A         GK++HA  ++ G   D+F+  +  DMY+K G    A+ +F+ + 
Sbjct: 111 FPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMP 170

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+  ++N  +          ++L+ F E R  G + ++++F   ++ACA  + ++ G++
Sbjct: 171 ERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQ 230

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  ++      + VAN ++DFY +  ++  +  IF  +   +  SW ++I+ Y    E
Sbjct: 231 LHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDE 290

Query: 240 VDTAINLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
            + A  +F   R++G+  +P  ++  ++L+AC+   ++E GK          V       
Sbjct: 291 EEKACLVFLRARKEGI--EPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVG 348

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL----F 353
           + +VD+ G+ G +EDA +    +P E +   W A++G     G  ++     + +     
Sbjct: 349 SALVDMYGKCGSIEDAERAFDEMP-ERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSH 407

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
            + P +  +  +LS   + AG  +   ++ E M+ R
Sbjct: 408 RVAPNYVTFVCVLSAC-SRAGSVNVGMEIFESMRGR 442



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLN-FDLFLTNALTDMYAKCGCLNLAQN 114
           PNS  L +++ +       R G+  HA+II+   N    F+ N L +MY+K    N AQ 
Sbjct: 6   PNS--LASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQL 63

Query: 115 VFNIS-FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           + +++  R  V++  LI G  Q    + +L  FS MR   ++ +  +F  A  A  +L +
Sbjct: 64  LLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRS 123

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
              GK++H + ++    + +FV  S  D Y+++G  + A K+FD +P ++ A+WN  +  
Sbjct: 124 PLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSN 183

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
             + G  D A+  F   R +G   + +++ A L AC+    +  G++
Sbjct: 184 SVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQ 230


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 146/409 (35%), Positives = 240/409 (58%), Gaps = 7/409 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPI-HNEFPNSV 59
           M+ ++    +A  LF  + E + + W ++++   +N    +AL+    M   H   P+  
Sbjct: 205 MHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGF 264

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   VL AC     L+ GKE+HA++I  G   ++ + ++L DMY KCG +  +Q +F+ +
Sbjct: 265 TFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRM 324

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             ++ VS++ L+ GY Q  D    + +F +M     K D+  F   +  CA LAA++QGK
Sbjct: 325 PIKNSVSWSALLGGYCQNGDFKSVIQIFRKME----KVDLYCFGTILRTCAGLAAVRQGK 380

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+H   IRK     + V ++++D Y + G I+ A  IFD +PV++  +WN++I G+   G
Sbjct: 381 EVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNG 440

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
             + A+ +F  M ++G+  D +S+I IL ACSH GLV++G++YF  M  D  +K    HY
Sbjct: 441 RGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHY 500

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +CMVDLLGRAGL+E+A  LI+      D+++W ALLGAC    N E+    A+ +  L+P
Sbjct: 501 SCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEP 560

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEV 406
            +   Y+LL+N+Y   G+W++A ++R LMK R   K PG SW++T++ +
Sbjct: 561 DYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIETKNNL 609



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 165/328 (50%), Gaps = 7/328 (2%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           E   +F  +  K+++SW +M++ + +    + +L+L  +M  +   PN+ TL+ V+ AC+
Sbjct: 113 ETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACS 172

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNI 128
               L+ G+  H  ++ +G + +  + +AL DM+ +   L+ A+ +F+     D + +  
Sbjct: 173 ELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTS 232

Query: 129 LIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
           +I   ++     E+L  F  M R  GM  D  +F   ++AC NL  +KQGKE+H   I  
Sbjct: 233 IISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITT 292

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
               ++ V +S++D Y + G +  + +IFD +P+K+S SW+ L+ GY   G+  + I +F
Sbjct: 293 GFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIF 352

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
             M +     D   +  IL  C+    V +GK+   +          +  + +VDL  + 
Sbjct: 353 RKMEK----VDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKC 408

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGA 335
           G +E A  +   +PV  +   W +++G 
Sbjct: 409 GCIEYAQTIFDQMPVR-NLITWNSMIGG 435



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 152/297 (51%), Gaps = 4/297 (1%)

Query: 42  ALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101
           ALQL++ +         V   ++L  C +      G +IHA +I+ GL FD F+ N+L  
Sbjct: 43  ALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLT 102

Query: 102 MYAKCGC-LNLAQNVFNISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
           +Y K G      + VF+  F +D +S+  +I GY +      SL LF +M   G++ +  
Sbjct: 103 LYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAF 162

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           +    I AC+ L  +K G+  HGV + +   ++  +A++++D + R+  +D A ++FD L
Sbjct: 163 TLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDEL 222

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMRED-GVGYDPVSYIAILTACSHGGLVEKG 278
              D+  W ++I         D A+  F +M+ D G+  D  ++  +LTAC + G +++G
Sbjct: 223 LEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQG 282

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           K+   ++         +  + +VD+ G+ G + ++ ++   +P++   + W ALLG 
Sbjct: 283 KEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVS-WSALLGG 338



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 2/207 (0%)

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I+   ++ + S +L L   +    +    V +   +  C  + A   G +IH   I+  L
Sbjct: 31  ILQLCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGL 90

Query: 190 HTHLFVANSILDFYTRSGR-IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
               FV NS+L  Y + G       K+FD L VKD  SW ++I GY  +G+   ++ LF 
Sbjct: 91  EFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFW 150

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            M   GV  +  +  A++ ACS  G ++ G+ +   +         +  + ++D+ GR  
Sbjct: 151 KMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNC 210

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGA 335
            ++DA +L   L +EPDA  W +++ A
Sbjct: 211 ALDDARQLFDEL-LEPDAICWTSIISA 236


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 149/420 (35%), Positives = 257/420 (61%), Gaps = 8/420 (1%)

Query: 2   YAKSSRPAEASYLFHNI-AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y+K     EA  +F+ +   ++ VSWN+M+  + Q++   KAL L +EM       +  T
Sbjct: 183 YSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFT 242

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC---LNLAQNVFN 117
           L +VL A      L  G++ H ++I+ G + +  + + L D Y+KCG    ++ ++ VF 
Sbjct: 243 LASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQ 302

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSE-SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
            I   D V +N +I GYS   + SE ++  F +M+ +G + D  SF+   SAC+NL++  
Sbjct: 303 EILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPS 362

Query: 176 QGKEIHGVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           QGK+IHG+ I+ ++ ++ + V N+++  Y +SG +  A ++FD +P  ++ S+N +I GY
Sbjct: 363 QGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGY 422

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
              G    A+ L++ M + G+  + ++++AIL+AC+H G V++G+KYF+ M+    ++P 
Sbjct: 423 AQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPE 482

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY+CM+DLLGRAG +E+A + I  +P +P +  W ALLGACR + N+ L   AA+ L 
Sbjct: 483 AEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELM 542

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +++P     Y++L+NMYA+AGKW+E + VR+ M+ +  +K PGCSW++ + +   FV  D
Sbjct: 543 VMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAED 602



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 196/434 (45%), Gaps = 57/434 (13%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK S+   A  LF    + + VS+N +++ +A  R  + A+ L + M       +  TL
Sbjct: 84  YAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTL 143

Query: 62  TNVLPACA-RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--I 118
           + ++ AC  R   +   K++H   +  G +    + NA    Y+K G L  A +VF    
Sbjct: 144 SGLIAACCDRVDLI---KQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMD 200

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RDEVS+N +IV Y Q  + +++L+L+ EM   G K D+ +    ++A  +L  +  G+
Sbjct: 201 GLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGR 260

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL---ANKIFDCLPVKDSASWNTLILGYG 235
           + HG  I+   H +  V + ++DFY++ G  D    + K+F  +   D   WNT+I GY 
Sbjct: 261 QFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYS 320

Query: 236 MLGE-VDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HG----------- 272
           M  E  + A+  F  M+  G   D  S++ + +ACS           HG           
Sbjct: 321 MNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNR 380

Query: 273 --------------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
                         G +   ++ FD M     +   + + CM+    + G   +A++L +
Sbjct: 381 ISVNNALISLYYKSGNLLDARRVFDRMP----ELNAVSFNCMIKGYAQHGHGTEALRLYQ 436

Query: 319 NL---PVEPDANIWGALLGACRIYGNVELGAW---AAEHLFMLKPQHCGYYILLSNMYAE 372
            +    + P+   + A+L AC   G V+ G       +  F ++P+   +Y  + ++   
Sbjct: 437 RMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPE-AEHYSCMIDLLGR 495

Query: 373 AGKWDEASKVRELM 386
           AGK +EA +  + M
Sbjct: 496 AGKLEEAERFIDAM 509



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 135/296 (45%), Gaps = 39/296 (13%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ---------NVF--NISFR- 121
           L  GK +HA  ++  +    +L+N   ++Y+KCGCL+ A+         NVF  N+  + 
Sbjct: 24  LFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKA 83

Query: 122 --------------------DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
                               D VSYN LI GY+   +   ++ LF  MR LG + D  + 
Sbjct: 84  YAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTL 143

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP- 220
            G I+AC +   +   K++H   +     ++  V N+ + +Y++ G +  A  +F  +  
Sbjct: 144 SGLIAACCDRVDLI--KQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDG 201

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
           ++D  SWN++I+ YG   E   A+ L++ M   G   D  +  ++L A +    +  G++
Sbjct: 202 LRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQ 261

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAG---LMEDAVKLIKNLPVEPDANIWGALL 333
           +  ++            + ++D   + G    M D+ K+ + + + PD  +W  ++
Sbjct: 262 FHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEI-LSPDLVLWNTMI 316



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 7/158 (4%)

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
           ++F  N I+  Y +  +I +A ++FD  P  D+ S+NTLI GY    E   A+ LF+ MR
Sbjct: 73  NVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMR 132

Query: 252 EDGVGYDPVSYIAILTA-CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
           E G   D  +   ++ A C    L+++   +      DS       +   V    + GL+
Sbjct: 133 ELGFEVDGFTLSGLIAACCDRVDLIKQLHCFAVSGGFDSYSSVNNAF---VTYYSKGGLL 189

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWA 348
            +AV +   +    D   W +++ A   YG  + GA A
Sbjct: 190 REAVSVFYGMDGLRDEVSWNSMIVA---YGQHKEGAKA 224



 Score = 45.1 bits (105), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y KS    +A  +F  + E N VS+N M+  +AQ+    +AL+L + M      PN++T
Sbjct: 390 LYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNIT 449

Query: 61  LTNVLPACA 69
              +L ACA
Sbjct: 450 FVAILSACA 458


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/421 (35%), Positives = 236/421 (56%), Gaps = 17/421 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +   A  +F+ I  KNIV+WNAM+    ++                   P+ +T
Sbjct: 269 MYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQED---------------DKVIPDVIT 313

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + N+LP+C++   L  GK IH   IRK     L L  AL DMY KCG L LA++VFN ++
Sbjct: 314 MINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMN 373

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N ++  Y Q     E+L +F  +    +K D ++    + A A LA+  +GK+
Sbjct: 374 EKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQ 433

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   ++  L ++ F++N+I+  Y + G +  A + FD +  KD  SWNT+I+ Y + G 
Sbjct: 434 IHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGF 493

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
             T+I  F  MR  G   +  +++++LTACS  GL+++G  +F+ M+ +  + P   HY 
Sbjct: 494 GRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYG 553

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLGR G +++A   I+ +P+ P A IWG+LL A R + +V L   AA H+  LK  
Sbjct: 554 CMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHD 613

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
           + G Y+LLSNMYAEAG+W++  +++ LMK +   K  GCS V      + F+  DR    
Sbjct: 614 NTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHAH 673

Query: 419 T 419
           T
Sbjct: 674 T 674



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 155/335 (46%), Gaps = 17/335 (5%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           + +S     A  +F  +   +   WN ++  +  N L  +A+     M       ++ T 
Sbjct: 68  FVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTF 127

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             V+ AC     L  G+++H ++I+ G + D+++ N L DMY K G + LA+ VF+ +  
Sbjct: 128 PFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPV 187

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VS+N ++ GY    D   SL  F EM  LG K D    + A+ AC+    ++ G EI
Sbjct: 188 RDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEI 247

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   IR  L   + V  S++D Y + G++D A ++F+ +  K+  +WN +I G       
Sbjct: 248 HCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGG------- 300

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
                      +D V  D ++ I +L +CS  G + +GK            P  +    +
Sbjct: 301 --------MQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETAL 352

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           VD+ G+ G ++ A  +   +  E +   W  ++ A
Sbjct: 353 VDMYGKCGELKLAEHVFNQMN-EKNMVSWNTMVAA 386



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 163/341 (47%), Gaps = 17/341 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  +  +++VSWN+MV+ +  +   L +L   +EM       +   
Sbjct: 168 MYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFG 227

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + + L AC+  H LR G EIH ++IR  L  D+ +  +L DMY KCG ++ A+ VFN I 
Sbjct: 228 MISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIY 287

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ V++N +I G  +                  +  DV++ +  + +C+   A+ +GK 
Sbjct: 288 SKNIVAWNAMIGGMQEDDK---------------VIPDVITMINLLPSCSQSGALLEGKS 332

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  IRK    +L +  +++D Y + G + LA  +F+ +  K+  SWNT++  Y    +
Sbjct: 333 IHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQ 392

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ +F+ +  + +  D ++  ++L A +      +GK+    +    +         
Sbjct: 393 YKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNA 452

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           +V +  + G ++ A +    + V  D   W  ++ A  I+G
Sbjct: 453 IVYMYAKCGDLQTAREFFDGM-VCKDVVSWNTMIMAYAIHG 492



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 149/321 (46%), Gaps = 26/321 (8%)

Query: 92  DLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMR 150
           DL +T  L   + + G +  A ++F  ++  D   +N++I GY+      E++  +  M 
Sbjct: 58  DLNITRDLCG-FVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRME 116

Query: 151 LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210
             G++ D  +F   I AC  L A+  G+++HG  I+      ++V N ++D Y + G I+
Sbjct: 117 CEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIE 176

Query: 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
           LA K+FD +PV+D  SWN+++ GY + G+  +++  F+ M   G   D    I+ L ACS
Sbjct: 177 LAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACS 236

Query: 271 HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI-----KNL----- 320
               +  G +   ++    ++   M    ++D+ G+ G ++ A ++      KN+     
Sbjct: 237 IEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNA 296

Query: 321 ---------PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSN 368
                     V PD      LL +C   G +  G   + H F ++     Y +L   L +
Sbjct: 297 MIGGMQEDDKVIPDVITMINLLPSCSQSGALLEG--KSIHGFAIRKMFLPYLVLETALVD 354

Query: 369 MYAEAGKWDEASKVRELMKSR 389
           MY + G+   A  V   M  +
Sbjct: 355 MYGKCGELKLAEHVFNQMNEK 375


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 153/414 (36%), Positives = 241/414 (58%), Gaps = 4/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A   F  I   +++  + M++ +AQ+    +A +L   +   +  PN  +
Sbjct: 307 MYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYS 366

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L++VL AC     L  GK+IH   I+ G   DLF+ NAL D YAKC  ++ +  +F+ S 
Sbjct: 367 LSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFS-SL 425

Query: 121 RD--EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           RD  EVS+N ++VG+SQ+    E+LS+F EM+   M    V++   + ACA+ A+I+   
Sbjct: 426 RDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAG 485

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH    +   +    + NS++D Y + G I  A K+F  L  +D  SWN +I GY + G
Sbjct: 486 QIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHG 545

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
           +   A+ LF+ M +  V  + ++++A+L+ CS  GLV  G   FD M+ D  +KP+  HY
Sbjct: 546 QAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHY 605

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C+V LLGRAG + DA++ I ++P  P A +W ALL +C I+ NV LG ++AE +  ++P
Sbjct: 606 TCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEP 665

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           Q    Y+LLSNMYA AG  D+ + +R+ M++   +K PG SWV+ + E+  F V
Sbjct: 666 QDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSV 719



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 130/282 (46%), Gaps = 3/282 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    A A  LF  + E+N+VS+  +V   AQ      A  L R +       N   
Sbjct: 105 MYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFV 164

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           LT +L              +H+   + G + + F+ + L D Y+ C  ++ A++VFN I 
Sbjct: 165 LTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIV 224

Query: 120 FRDEVSYNILIVGYSQTSDCSE-SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            +D V +  ++  YS+ +DC E +  +FS+MR+ G K +  +    + A   L ++  GK
Sbjct: 225 RKDAVVWTAMVSCYSE-NDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGK 283

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IHG  I+    T   V  ++LD Y + G I  A   F+ +P  D    + +I  Y    
Sbjct: 284 GIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSN 343

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
           + + A  LF  +    V  +  S  ++L AC++   ++ GK+
Sbjct: 344 QNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQ 385



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 135/293 (46%), Gaps = 17/293 (5%)

Query: 39  ELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL--NFDLFLT 96
           EL +L ++  +P  + F  +  L   +   ARG   R G+ +H  ++R+G     DLF  
Sbjct: 44  ELTSLAILPSVPGVDSFACARQLQGCI---ARGD-ARGGRAVHGHVVRRGGVGRLDLFCA 99

Query: 97  NALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-- 153
           N L +MY K G L  A+ +F+ +  R+ VS+  L+  ++Q  D   + +LF  +R  G  
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHE 159

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
           +   V++ M  ++   + A +  G  +H    +     + FV + ++D Y+    +  A 
Sbjct: 160 VNQFVLTTMLKLAIAMDAAGLAGG--VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAE 217

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA--CSH 271
            +F+ +  KD+  W  ++  Y      + A  +F  MR  G   +P +  ++L A  C  
Sbjct: 218 HVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLP 277

Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHY-ACMVDLLGRAGLMEDAVKLIKNLPVE 323
             ++ KG          ++  TE H    ++D+  + G ++DA    + +P +
Sbjct: 278 SVVLGKG---IHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYD 327


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 143/359 (39%), Positives = 226/359 (62%), Gaps = 5/359 (1%)

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           V+ T ++    +  F R G  ++  IIR   +N D+F+ NAL DMY KCG  N A+ VF 
Sbjct: 207 VSWTTMIQGYVKMGFAREGVGLY--IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQ 264

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  ++ VS+N +I G +Q     ESL +F +M+ LG+K D V+ +  +++CANL  ++ 
Sbjct: 265 EMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLEL 324

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK +H    R  +    F+ N+++D Y + G ID A  +F  +  KD  S+  +I+G  M
Sbjct: 325 GKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAM 384

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G+   A++LF  M + G+  D V+++ +LTACSH GLVE+G+KYF++M    +++P   
Sbjct: 385 HGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLE 444

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY CMVDLLGRAGL+ +A + I+N+P+EPDA + GALLGAC+I+G VELG    + +  +
Sbjct: 445 HYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKI 504

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +P+  G Y+L+SN+Y+ A +W +A K+R+ MK R  +K PGCS ++    + +F   D+
Sbjct: 505 EPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDK 563



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 157/323 (48%), Gaps = 39/323 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  +  KN+VSWN+M++  AQ     ++L + R+M      P+ VT
Sbjct: 249 MYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVT 308

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L  VL +CA    L  GK +HA + R  +  D F+ NAL DMYAKCG ++ A  VF    
Sbjct: 309 LVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMN 368

Query: 121 RDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           R +V SY  +IVG +      ++L LFSEM  +G++ D V+F+G ++AC+++  +++G++
Sbjct: 369 RKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRK 428

Query: 180 -IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
               ++   +L   L     ++D   R+G I+ A +    +P++  A     +LG     
Sbjct: 429 YFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDA----FVLG----- 479

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP-TEMHY 297
                                    A+L AC   G VE G+    +++   ++P  +  Y
Sbjct: 480 -------------------------ALLGACKIHGKVELGESVMKKIE--KIEPRKDGAY 512

Query: 298 ACMVDLLGRAGLMEDAVKLIKNL 320
             M ++   A    DA+KL K +
Sbjct: 513 VLMSNIYSSANRWRDALKLRKTM 535



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 166/350 (47%), Gaps = 20/350 (5%)

Query: 52  HNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL 111
           H+  P+ ++  + L  C     ++  K+IHA II+   + D  LT + T + A C     
Sbjct: 31  HDFNPHKLSFLSTLQTCKS---IKGLKQIHASIIKTMPSPDAQLTIS-TRLSALCAQSLP 86

Query: 112 AQNVFNISFRDEVS------YNILIVGYSQTS-DCSESLSLFSEMRLLGMKHDVVSFMGA 164
               + +S   ++       YN +I G + ++ D  E L ++ +M   G+  D  +    
Sbjct: 87  IDPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFV 146

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           + ACA   A+++G+E+HG  I+  L + ++V+N+++  Y     I  A K+FD  P +D 
Sbjct: 147 LKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDL 206

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            SW T+I GY  +G     + L+  +R   V  D     A++      G     +K F E
Sbjct: 207 VSWTTMIQGYVKMGFAREGVGLY-IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQE 265

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IKNLPVEPDANIWGALLGACRIYGN 341
           M   +V    + +  M+  L + G  ++++ +   ++ L V+PD     A+L +C   G 
Sbjct: 266 MPVKNV----VSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGV 321

Query: 342 VELGAWAAEHLFMLKPQHCGYY-ILLSNMYAEAGKWDEASKVRELMKSRE 390
           +ELG W   +L   + +  G+    L +MYA+ G  D+A  V + M  ++
Sbjct: 322 LELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKD 371


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 152/417 (36%), Positives = 238/417 (57%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K+     A+ LF  +  K+I+SW++MVA +A N  E  AL L  EM       N VT
Sbjct: 251 LYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVT 310

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + + L ACA    L  GK IH   +  G   D+ ++ AL DMY KC     A ++FN + 
Sbjct: 311 VISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMP 370

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+ +L  GY++     +SL +F  M   G + D ++ +  ++A + L  ++Q   
Sbjct: 371 KKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQALC 430

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H    +     + F+  S+++ Y +   ID ANK+F  +  KD  +W+++I  YG  G+
Sbjct: 431 LHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVTWSSIIAAYGFHGQ 490

Query: 240 VDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
            + A+ LF  M     V  + V++++IL+ACSH GL+E+G K F  M  +  + P   HY
Sbjct: 491 GEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNTEHY 550

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
             MVDLLGR G ++ A+ +I  +P++   ++WGALLGACRI+ N+++G  AA +LF+L P
Sbjct: 551 GIMVDLLGRMGELDKALDMINEMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDP 610

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            H GYY LLSN+Y     W +A+K+R L+K    KK  G S V+ ++EV  F+ +DR
Sbjct: 611 NHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRFKKIVGQSMVEIKNEVHSFIASDR 667



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 175/359 (48%), Gaps = 29/359 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM---PIHNEFPN 57
           +YA+ +    A  LF     K +  WNA++ ++      ++ L L  +M    I  E P+
Sbjct: 45  LYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAITEERPD 104

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           + T++  L +C+    L  GK IH  + +K ++ D+F+ +AL ++Y+KCG +N A  VF 
Sbjct: 105 NYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFT 164

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAAIK 175
               +D V +  +I GY Q      +L+ FS M +L  +  D V+ + A SACA L+   
Sbjct: 165 EYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFN 224

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G+ +HG   R+   T L +ANSIL+ Y ++G I  A  +F  +P KD  SW++++  Y 
Sbjct: 225 LGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYA 284

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G    A+NLF  M +  +  + V+ I+ L AC+    +E+GK          +    +
Sbjct: 285 DNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKH---------IHKLAV 335

Query: 296 HYACMVDLLGRAGLME---------DAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
           +Y   +D+     LM+         +A+ L   +P + D   W  L       G  E+G
Sbjct: 336 NYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMP-KKDVVSWAVLFS-----GYAEIG 388



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 127/263 (48%), Gaps = 7/263 (2%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILIVGYSQTS 137
           ++H++ ++ GL  D F+   L  +YA+   L  A  +F  +    V  +N L+  Y    
Sbjct: 22  QLHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 138 DCSESLSLFSEMR---LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
              E+LSLF +M    +   + D  +   A+ +C+ L  ++ GK IHG   +K +   +F
Sbjct: 82  KWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMF 141

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE-D 253
           V +++++ Y++ G+++ A K+F   P +D   W ++I GY   G  + A+  F  M   +
Sbjct: 142 VGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLE 201

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
            V  DPV+ ++  +AC+       G+     ++             +++L G+ G +  A
Sbjct: 202 QVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSA 261

Query: 314 VKLIKNLPVEPDANIWGALLGAC 336
             L + +P + D   W +++ AC
Sbjct: 262 ANLFREMPYK-DIISWSSMV-AC 282



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 7/184 (3%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           +  C +  +I Q   +H   ++  L    FV   +   Y R   +  A+K+F+  P K  
Sbjct: 11  LETCCSKISIPQ---LHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTV 67

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD-PVSYIA--ILTACSHGGLVEKGKKY 281
             WN L+  Y + G+    ++LF  M  D +  + P +Y     L +CS    +E GK  
Sbjct: 68  YLWNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMI 127

Query: 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
              ++   +       + +++L  + G M DAVK+    P + D  +W +++      G+
Sbjct: 128 HGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYP-KQDVVLWTSIITGYEQNGS 186

Query: 342 VELG 345
            EL 
Sbjct: 187 PELA 190


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 152/423 (35%), Positives = 251/423 (59%), Gaps = 10/423 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPI-HNEFPNSVT 60
           Y        A  LF  I  K++VSWNAM++ + +     +AL+L +EM +  N  P+  T
Sbjct: 165 YVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDEST 224

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  V+ ACA+   +  G+ +H+ I   G   +L + NAL D+Y+K G +  A  +F+ + 
Sbjct: 225 MVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLW 284

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+N LI GY+  +   E+L LF EM   G   + V+ +  + ACA+L AI  G+ 
Sbjct: 285 NKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 344

Query: 180 IHGVTIRKHLHTHLF----VANSILDFYTRSGRIDLANKIFDC-LPVKDSASWNTLILGY 234
           IH V I K L   +     +  S++D Y + G ID A ++FD  +  +  ++WN +I G+
Sbjct: 345 IH-VYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGF 403

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPT 293
            M G  + A ++F  MR +G+  D ++++ +L+ACSH G+++ G+  F  M +   + P 
Sbjct: 404 AMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPK 463

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY CM+DLLG +GL ++A ++I  +P+EPD  IW +LL AC+I+GN+ELG   A+ L 
Sbjct: 464 LEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLI 523

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN-PGCSWVQTRDEVQDFVVN 412
            ++P + G Y+LLSN+YA AG+W+E +K+R L+  +  KK  PGCS ++    V +F++ 
Sbjct: 524 KIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIG 583

Query: 413 DRM 415
           D++
Sbjct: 584 DKL 586



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 187/392 (47%), Gaps = 38/392 (9%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  I E N++ WN M    A +   + AL+L   M      P+S T   +L +CA+   
Sbjct: 45  VFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKI 104

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF------------- 120
            + G++IH  +++ G + D+++  +L  MYA+ G L  A+ VF+IS              
Sbjct: 105 RKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAG 164

Query: 121 -------------------RDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVS 160
                              +D VS+N +I GY +T +  E+L LF EM ++  ++ D  +
Sbjct: 165 YVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDEST 224

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
            +  +SACA   +I+ G+ +H         ++L + N+++D Y++ G ++ A ++FD L 
Sbjct: 225 MVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLW 284

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK- 279
            KD  SWNTLI GY  +     A+ LF+ M   G   + V+ ++IL AC+H G ++ G+ 
Sbjct: 285 NKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 344

Query: 280 --KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
              Y ++     V         ++D+  + G ++ A ++  +       + W A++    
Sbjct: 345 IHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFA 404

Query: 338 IYG--NVELGAWAAEHLFMLKPQHCGYYILLS 367
           ++G  N     ++   +  ++P    +  LLS
Sbjct: 405 MHGRANAAFDIFSRMRMNGIEPDDITFVGLLS 436



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 128/238 (53%), Gaps = 7/238 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K      A  LF  +  K+++SWN ++  +    L  +AL L +EM    E PN VT
Sbjct: 266 LYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 325

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR--KGLNFDL-FLTNALTDMYAKCGCLNLAQNVFN 117
           + ++LPACA    +  G+ IH  I +  KG+  ++  L  +L DMYAKCG ++ AQ VF+
Sbjct: 326 MLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFD 385

Query: 118 --ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
             +S R   ++N +I G++     + +  +FS MR+ G++ D ++F+G +SAC++   + 
Sbjct: 386 SSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLD 445

Query: 176 QGKEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
            G+ I     R + +   L     ++D    SG    A ++ + +P++ D   W +L+
Sbjct: 446 LGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLL 503



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 127/297 (42%), Gaps = 43/297 (14%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKC------GCLNLAQNVFN-ISFRDEVSYNILI 130
           + IHA++I+ GL+   +   AL+ +   C           A +VF+ I   + + +N + 
Sbjct: 5   RXIHAQMIKTGLHNTNY---ALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMF 61

Query: 131 VGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH 190
            G++ +SD   +L L+  M  LG+  D  +F   + +CA     K+G++IHG  ++    
Sbjct: 62  RGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFD 121

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDC-------------------------------L 219
             ++V  S++  Y ++GR++ A K+FD                                +
Sbjct: 122 LDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEI 181

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLF-EAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           P KD  SWN +I GY   G    A+ LF E M    V  D  + + +++AC+    +E G
Sbjct: 182 PGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELG 241

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +     +              ++DL  + G +E A +L   L    D   W  L+G 
Sbjct: 242 RHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGL-WNKDVISWNTLIGG 297


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 157/415 (37%), Positives = 245/415 (59%), Gaps = 5/415 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YA S R AE   LF  +  K+IVSW  M++ +  N L  KA+   R M   +  P+ +T
Sbjct: 343 LYAGSWREAEK--LFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEIT 400

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +  VL ACA    L  G E+H   I+  L   + + N L +MY+KC C++ A ++F NI 
Sbjct: 401 VAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIP 460

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ +S+  +I G    + C E+L  F +M++  ++ + ++   A++ACA + A+  GKE
Sbjct: 461 RKNVISWTSIIAGLRLNNRCFEALIFFRQMKMT-LQPNAITLTAALAACARIGALMCGKE 519

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +R  +    F+ N++LD Y R GR+++A   F+    KD +SWN L+ GY   G+
Sbjct: 520 IHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNSQK-KDVSSWNILLTGYSERGQ 578

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
               + LF+ M +  V  D +++I++L  C    +V +G  YF +M+   V P   HYAC
Sbjct: 579 GSVVVELFDRMVKARVRPDEITFISLLCGCGKSQMVRQGLMYFSKMEEYGVTPNLKHYAC 638

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLLGRAG +++A K I+ +PV PD  +WGALL ACRI+ N++LG  +A+ +F L    
Sbjct: 639 VVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHNIDLGELSAQRIFELDKGS 698

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            GYYILL N+YA+ GKW E +KVR +MK      + GCSWV+ + +V  F+ +D+
Sbjct: 699 VGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDK 753



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 170/344 (49%), Gaps = 11/344 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLV-REMPIHNEFPNSV 59
           M+ +     +A Y+F  ++E+N+ SWN +V  +A+     +A+ L  R + +    P+  
Sbjct: 138 MFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVY 197

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   VL  C     L  G+E+H  ++R G   D+ + NAL  MY KCG +  A+ +F+ +
Sbjct: 198 TFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRM 257

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD +S+N +I GY +     E L LF  MR L +  D+++    ISAC  L   + G+
Sbjct: 258 PRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGR 317

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH   I       + V NS+   Y  +G    A K+F  +  KD  SW T+I GY    
Sbjct: 318 DIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNF 377

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             + AI+ +  M +D V  D ++  A+L+AC+  G ++ G     E+   ++K   + Y 
Sbjct: 378 LPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGV----ELHKLAIKARLISYV 433

Query: 299 C----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
                ++++  +   ++ A+ +  N+P   +   W +++   R+
Sbjct: 434 IVANNLINMYSKCKCIDKALDIFHNIP-RKNVISWTSIIAGLRL 476



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 120/298 (40%), Gaps = 42/298 (14%)

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           G        E++ L + M+ L +  D   F+  +  C    A ++G +++ V +      
Sbjct: 68  GLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMNSL 127

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            + + N+ L  + R G +  A  +F  +  ++  SWN L+ GY   G  D AI L+  M 
Sbjct: 128 SVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRML 187

Query: 252 -EDGVGYDPVSYIAILTACSHGGLVEKGK-------KYFDEMQADSVKP-TEMHYAC--- 299
              GV  D  ++  +L  C     + +G+       +Y  E+  D V     M+  C   
Sbjct: 188 WVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDV 247

Query: 300 -----MVDLLGRA---------------GLMEDAVKL---IKNLPVEPDANIWGALLGAC 336
                + D + R                G+  + +KL   ++ L V+PD     +++ AC
Sbjct: 248 KSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISAC 307

Query: 337 RIYGNVELG----AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390
            + G+  LG    A+     F +    C     L+ MY  AG W EA K+   M  ++
Sbjct: 308 ELLGDRRLGRDIHAYVITTGFAVDISVCNS---LTQMYLYAGSWREAEKLFSRMDCKD 362


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 147/416 (35%), Positives = 241/416 (57%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ K     +A  LF  + EKNI+SWN ++          +A +L   M        S  
Sbjct: 175 MHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRM 234

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              ++ A A    +  G+++H+  ++ G+  D+F+  AL DMY+KCG +  AQ VF+ + 
Sbjct: 235 FVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMP 294

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  V +N +I GY+      E+LS++ EMR  G+K D  +F   I  CA LA+++  K+
Sbjct: 295 EKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQ 354

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   +R      +    +++D Y++ GRI+ A  +FD +P K+  SWN LI GYG  G 
Sbjct: 355 AHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGR 414

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ +FE M  +G+  + V+++A+L+ACS+ GL ++G + F+ M  D  +KP  MHYA
Sbjct: 415 GVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYA 474

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM++LLGR GL+++A  LIK+ P +P  N+W ALL ACR++ N ELG +AAE L+ + P+
Sbjct: 475 CMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPE 534

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y++L N+Y  +G+ +EA+ V + +K R  +  P CSW++ + +   F+  D+
Sbjct: 535 KLSNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDK 590



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 175/363 (48%), Gaps = 15/363 (4%)

Query: 41  KALQLVREMPIHNEFP-NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99
           +AL+L   + ++  +  +S T   ++ AC     +R  K++   +I  GL+ D +L N +
Sbjct: 113 EALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRV 172

Query: 100 TDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
             M+ KCG +  A+ +F+ +  ++ +S+N +I G     D  E+  LF  M         
Sbjct: 173 LLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGS 232

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
             F+  I A A L  I  G+++H  +++  +   +FVA +++D Y++ G I+ A  +FD 
Sbjct: 233 RMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQ 292

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P K +  WN++I GY + G  + A++++  MR+ GV  D  ++  I+  C+    +E  
Sbjct: 293 MPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHA 352

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
           K+    +         +    +VDL  + G +EDA  +   +P   +   W AL+     
Sbjct: 353 KQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMP-HKNVISWNALIAG--- 408

Query: 339 YGNVELGAWAAE------HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392
           YGN   G  A E      H  M+ P H  +  +LS   + +G  D   ++ E M SR+ K
Sbjct: 409 YGNHGRGVEAVEMFERMLHEGMV-PNHVTFLAVLSAC-SYSGLSDRGWEIFESM-SRDHK 465

Query: 393 KNP 395
             P
Sbjct: 466 IKP 468


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 155/420 (36%), Positives = 242/420 (57%), Gaps = 8/420 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++      +  +F N+ E+++V+WN MV+ F QN L+ + L LV  M       +SVT
Sbjct: 366 MYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVT 425

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF--NI 118
           LT +L   +       GK+ HA +IR G+ F+  + + L DMYAK G +  AQ +F  N 
Sbjct: 426 LTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDSYLIDMYAKSGLITTAQQLFEKNS 484

Query: 119 SF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
            + RDE ++N +I GY+Q     E  ++F +M    ++ + V+    + AC  +  I  G
Sbjct: 485 DYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLG 544

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K+IHG  IR  L+ ++FV  ++LD Y++SG I  A  +F     K+S ++ T+I  YG  
Sbjct: 545 KQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQH 604

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G  + A++LF AM   G+  D V+++AIL+ACS+ GLV++G + F  M+ +  ++P+  H
Sbjct: 605 GMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEH 664

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDA-NIWGALLGACRIYGNVELGAWAAEHLFML 355
           Y C+ D+LGR G + +A + +K L  E +   IWG+LLGACRI+G  ELG   A  L  +
Sbjct: 665 YCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEM 724

Query: 356 KPQH--CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +      GY++LLSN+YA  G WD   +VR+ M+ +   K  GCSWV+    V  F+  D
Sbjct: 725 EKGSSLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRD 784



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 193/420 (45%), Gaps = 43/420 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSV 59
           MYA+      A  +F    E+N   WN M+  + QN   ++A+ L  ++    +F  + V
Sbjct: 264 MYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDV 323

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T  + L A ++  +L  G+++HA I++      + + NA+  MY++CG +  +  VF N+
Sbjct: 324 TFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNM 383

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD V++N ++  + Q     E L L   M+  G   D V+    +S  +NL + + GK
Sbjct: 384 LERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGK 443

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD--CLPVKDSASWNTLILGYGM 236
           + H   IR  +     + + ++D Y +SG I  A ++F+      +D A+WN +I GY  
Sbjct: 444 QAHAYLIRHGIQFE-GMDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQ 502

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK---------------- 280
            G  +    +F  M E  V  + V+  +IL AC+  G +  GK+                
Sbjct: 503 NGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFV 562

Query: 281 ---------------YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PV 322
                          Y + + A++++   + Y  M+   G+ G+ E A+ L   +    +
Sbjct: 563 GTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGI 622

Query: 323 EPDANIWGALLGACRIYGNVELGA---WAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA 379
           +PD+  + A+L AC   G V+ G     + E  + ++P    +Y  +++M    G+  EA
Sbjct: 623 KPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPS-AEHYCCVADMLGRVGRVVEA 681



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 166/327 (50%), Gaps = 6/327 (1%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + ++N+V+WN M++ + +    ++A ++ R M      P  V+  NV PA  R   
Sbjct: 174 VFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSD 233

Query: 74  LRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVFNISF-RDEVSYNILI 130
                 ++  +++ G +F  D F+ ++   MYA+ GC++ A+ +F+    R+   +N +I
Sbjct: 234 YDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMI 293

Query: 131 VGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
            GY Q +   E++ LF + M       D V+F+ A++A + L  ++ G+++H   ++   
Sbjct: 294 GGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSST 353

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
              + + N+I+  Y+R G I  + K+F  +  +D  +WNT++  +   G  D  + L  A
Sbjct: 354 ILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFA 413

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M++ G   D V+  A+L+  S+    E GK+    +    ++   M  + ++D+  ++GL
Sbjct: 414 MQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMD-SYLIDMYAKSGL 472

Query: 310 MEDAVKLI-KNLPVEPDANIWGALLGA 335
           +  A +L  KN   + D   W A++  
Sbjct: 473 ITTAQQLFEKNSDYDRDEATWNAMIAG 499



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 160/352 (45%), Gaps = 23/352 (6%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP--NSVTL 61
           +   P +A +LF +I     V WN ++  F  N + + AL     M      P  +S T 
Sbjct: 49  RQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPS-PKFDSYTF 107

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC--------------G 107
           ++ L ACA+   L+ GK +H  ++R        + N+L +MY+ C               
Sbjct: 108 SSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNN 167

Query: 108 CLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS 166
           C +L + VF+ +  R+ V++N +I  Y +T    E+  +F  M  +G++   VSF+    
Sbjct: 168 C-DLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFP 226

Query: 167 ACANLAAIKQGKEIHGVTIR--KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           A   ++       ++G+ ++         FV +S +  Y   G +D A +IFDC   +++
Sbjct: 227 AVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNT 286

Query: 225 ASWNTLILGYGMLGEVDTAINLF-EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283
             WNT+I GY        AI+LF + M  +    D V++++ LTA S    +E G++   
Sbjct: 287 EVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHA 346

Query: 284 EMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            +   S     +    ++ +  R G +  + K+  N+ +E D   W  ++ A
Sbjct: 347 YILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNM-LERDVVTWNTMVSA 397


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 152/418 (36%), Positives = 241/418 (57%), Gaps = 3/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K+     AS LF  +++K+I+SW+ MVA +A N  E   L L  EM      PN VT
Sbjct: 388 LYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVT 447

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VL ACA    L  G +IH   +  G   +  ++ AL DMY KC     A ++FN + 
Sbjct: 448 VVSVLRACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMP 507

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +++ +L  GY+      ES+ +F  M   G + D ++ +  ++  + L  ++Q   
Sbjct: 508 KKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVC 567

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+     + F+  S+++ Y +   I+ ANK+F  +  KD  +W+++I  YG  G+
Sbjct: 568 LHAFVIKNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQ 627

Query: 240 VDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
            + A+ LF  M        + V++I+IL+ACSH GL+++G   FD M     +KP   HY
Sbjct: 628 GEEALKLFYQMANHSDTKPNNVTFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHY 687

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           A MVDLLGR G ++ A+ +I N+P++   +IWGALLGACRI+ N+++G  AA++LF L P
Sbjct: 688 AIMVDLLGRMGELDMALDVINNMPMQAGPDIWGALLGACRIHQNIKMGEVAAKNLFSLDP 747

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
            H GYYILLSN+Y+    W  A+K+R L+K +   K  G S V+ ++EV+ F+  DR+
Sbjct: 748 NHAGYYILLSNIYSVDENWHSATKLRRLVKEKRLNKIVGQSVVELKNEVRSFIAGDRI 805



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 169/360 (46%), Gaps = 8/360 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP-----IHNEF 55
           +YA+ +    A  LF     + +  WNA++ ++      ++ L L R+M         E 
Sbjct: 180 LYARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEER 239

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P++ +++  L +CA    L  GK IH  + +  ++ D+F+ +AL D+Y KCG +N A  V
Sbjct: 240 PDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKV 299

Query: 116 F-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAA 173
           F      D V +  +I GY Q+     +L+ FS M +   +  D V+ +   SACA L+ 
Sbjct: 300 FMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSN 359

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
            K G+ +HG   RK L   L +ANS+L  Y ++G I  A+ +F  +  KD  SW+T++  
Sbjct: 360 FKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVAC 419

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
           Y   G     ++LF  M +  +  + V+ +++L AC+    +E+G K  +       +  
Sbjct: 420 YADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEME 479

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
                 ++D+  +    E AV L   +P + D   W  L       G V    W   ++ 
Sbjct: 480 TTVSTALMDMYMKCFSPEKAVDLFNRMP-KKDVIAWAVLFSGYADNGMVHESMWVFRNML 538



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 127/265 (47%), Gaps = 9/265 (3%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
           ++H++ ++ GL  D F+   L  +YA+   ++ A  +F     R    +N L+  Y    
Sbjct: 157 QLHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEG 216

Query: 138 DCSESLSLFSEMRLLGM-----KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           +  E+LSLF +M  +       + D  S   A+ +CA L  +  GK IHG   +  +   
Sbjct: 217 EWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGD 276

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM-R 251
           +FV ++++D YT+ G+++ A K+F   P  D   W ++I GY   G  + A+  F  M  
Sbjct: 277 MFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVV 336

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
            + V  DPV+ +++ +AC+     + G+     ++   +         ++ L G+ G ++
Sbjct: 337 SEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIK 396

Query: 312 DAVKLIKNLPVEPDANIWGALLGAC 336
           +A  L + +  + D   W  ++ AC
Sbjct: 397 NASNLFREMS-DKDIISWSTMV-AC 419



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 9/186 (4%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           +  C +  +I Q   +H   ++  L    F+   +   Y R   I  A+K+F   P +  
Sbjct: 146 LETCCSKLSISQ---LHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHKLFQETPHRTV 202

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMR---EDGVGYDPVSYIAILTACSHGGLVE--KGK 279
             WN L+  Y   GE    ++LF  M       +   P +Y   +   S  GL +   GK
Sbjct: 203 YLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGK 262

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
                ++   +       + ++DL  + G M DAVK+    P +PD  +W +++      
Sbjct: 263 VIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYP-KPDVVLWTSIISGYEQS 321

Query: 340 GNVELG 345
           G+ EL 
Sbjct: 322 GSPELA 327


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 148/416 (35%), Positives = 246/416 (59%), Gaps = 4/416 (0%)

Query: 1   MYAKSSRPAE-ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MYA      + A  +F +I  KN VSW  ++  +   R     L++ R+M +     +  
Sbjct: 152 MYATCCDSMDNARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPF 211

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           + +  + ACA       GK++HA +I  G   +L + NA+ DMY +C C + A+ +F  +
Sbjct: 212 SFSIAVSACASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEM 271

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + +D +++N LI G+ +T D  ESL +FS+M   G   +  +F   I+ACANLA +  G+
Sbjct: 272 TQKDTITWNTLIAGF-ETLDSYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQ 330

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++HG  I + L  +L ++N+++D Y + G +  ++KIF  +   +  SW ++++GYG  G
Sbjct: 331 QLHGGIIHRGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHG 390

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A++LF  M   G+  D + ++A+L+ACSH GLV++G +YF  M +  +V P    Y
Sbjct: 391 HGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIY 450

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           AC+VDLL RAG +++A +LI+N+P +PD +IW ALLGAC+ Y    +   AA  +  +KP
Sbjct: 451 ACVVDLLSRAGRVKEAYELIENMPFKPDESIWVALLGACKKYKQPSIQKLAALKVLEMKP 510

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
              G Y+LLSN  A  G W + + +R+LM+S ++KK  G SW++ +++V  F+V D
Sbjct: 511 NKAGTYVLLSNFSAAEGNWADFASLRKLMRSTKSKKEVGRSWIELKNQVCSFIVGD 566



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 4/244 (1%)

Query: 95  LTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
           LT  L   Y   G    A  +F+ +  RD +++  +I GY+  +  S + ++F+ M   G
Sbjct: 43  LTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDG 102

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH-THLFVANSILDFY-TRSGRIDL 211
           +K +  +    + AC +L A+  GK +HG+ I+     + ++V N+++D Y T    +D 
Sbjct: 103 VKPNAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDN 162

Query: 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271
           A  +F+ +  K++ SW TLI GY    +    + +F  M  +     P S+   ++AC+ 
Sbjct: 163 ARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACAS 222

Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
            G    GK+    +     +        ++D+  R     +A +L   +  + D   W  
Sbjct: 223 IGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEM-TQKDTITWNT 281

Query: 332 LLGA 335
           L+  
Sbjct: 282 LIAG 285


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 146/416 (35%), Positives = 247/416 (59%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K  +   A  +F  ++ ++I+SWN M+A +  NR +++AL+L   M          T
Sbjct: 100 LYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFT 159

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L++ L ACA  + +   K++H   I+  L+   F+  A  D+YAKC  +  A  VF N+ 
Sbjct: 160 LSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMP 219

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  V+++ L  G+ Q     E L LF   +  GM+    +    +S CA+LA I +G +
Sbjct: 220 EKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQ 279

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H V ++   H +LFVA S++D Y + G+I+ + ++F  +  K+   WN +I  +     
Sbjct: 280 VHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAH 339

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LFE M++ G+  + V+Y++IL+ACSH GLVE+G+ YF+ + +D + +P  +HY+
Sbjct: 340 SWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYS 399

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGR+G  ++A KL+  +P EP A++WG+LLG+ RI+ N+ L   AAE LF L+P+
Sbjct: 400 CMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPE 459

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G ++LLSN+YA +G W+     R+ ++   AKK  G SW++ + ++  FV  +R
Sbjct: 460 NGGNHVLLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGER 515



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 157/329 (47%), Gaps = 10/329 (3%)

Query: 36  NRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFL 95
           +R+  K   LVR   +  +  +  TL  +L  CA+   L  GK  H   I  GL  D   
Sbjct: 37  HRIVHKDKNLVR---VERDLIDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVT 93

Query: 96  TNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154
            N L ++Y KCG  + A+ VF+ +S R  +S+N +I GY+   +  E+L LFS M   G 
Sbjct: 94  CNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGT 153

Query: 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANK 214
           +    +    + ACA   AI + K++H + I+  L +  FV  + LD Y +   I  A  
Sbjct: 154 QMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACW 213

Query: 215 IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL 274
           +F+ +P K S +W++L  G+   G  +  + LF++ + +G+     +  +IL+ C+   L
Sbjct: 214 VFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLAL 273

Query: 275 VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
           + +G +    +              +VD+  + G +E + ++  ++  E +  +W A++ 
Sbjct: 274 IIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADME-EKNVVLWNAMIA 332

Query: 335 ACRIYGNVELGAWAAEHLFMLKPQHCGYY 363
           +   + +    +W A  LF  K Q  G +
Sbjct: 333 SFSRHAH----SWEAMILFE-KMQQVGIF 356


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 150/425 (35%), Positives = 239/425 (56%), Gaps = 34/425 (8%)

Query: 22  NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81
            +V++NAM++ +    L  +AL++VR M       +  T  +V+ ACA    L+ GK++H
Sbjct: 250 KLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVH 309

Query: 82  ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCS 140
           A ++R+  +F     N+L  +Y KCG  N A+ +F  +  +D VS+N L+ GY  +    
Sbjct: 310 AYVLRRE-DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIG 368

Query: 141 ES-------------------------------LSLFSEMRLLGMKHDVVSFMGAISACA 169
           E+                               L LFS M+  G +    +F GAI +CA
Sbjct: 369 EAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCA 428

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
            L A   G++ H   ++    + L   N+++  Y + G ++ A ++F  +P  DS SWN 
Sbjct: 429 VLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNA 488

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-D 288
           LI   G  G    A++++E M + G+  D ++++ +LTACSH GLV++G+KYF+ M+   
Sbjct: 489 LIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVY 548

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWA 348
            + P   HYA ++DLL R+G   +A  +I++LP +P A IW ALL  CR++GN+ELG  A
Sbjct: 549 RIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIA 608

Query: 349 AEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQD 408
           A+ LF L P+H G Y+LLSNMYA  G+W+E ++VR+LM+ R  KK   CSW++   +V  
Sbjct: 609 ADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHT 668

Query: 409 FVVND 413
           F+V+D
Sbjct: 669 FLVDD 673



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 120/254 (47%), Gaps = 19/254 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y  S    EA  +F  + EKNI+SW  M++  A+N    + L+L   M      P     
Sbjct: 361 YVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAF 420

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
           +  + +CA       G++ HA++++ G +  L   NAL  MYAKCG +  AQ VF  +  
Sbjct: 421 SGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPC 480

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
            D VS+N LI    Q     E++ ++ EM   G++ D ++F+  ++AC++   + QG   
Sbjct: 481 LDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQG--- 537

Query: 181 HGVTIRKHLHTHLFVAN---------SILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTL 230
                RK+ ++   V            ++D   RSG+   A  I + LP K +A  W  L
Sbjct: 538 -----RKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEAL 592

Query: 231 ILGYGMLGEVDTAI 244
           + G  + G ++  I
Sbjct: 593 LSGCRVHGNMELGI 606



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 177/415 (42%), Gaps = 81/415 (19%)

Query: 2   YAKSSRPAEASYLFHN--IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           Y  S   A A  +F    ++ ++ V +NAM+  F+ N     A+ L  +M      P+  
Sbjct: 90  YCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDF 149

Query: 60  TLTNVLPACARG-HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC----LNLAQN 114
           T  +VL   A      +   + HA  ++ G  +   ++NAL  +Y++C      L+ A+ 
Sbjct: 150 TYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARK 209

Query: 115 VFN-ISFRDE--------------------------------VSYNILIVGYSQTSDCSE 141
           VF+ I  +DE                                V+YN +I GY       E
Sbjct: 210 VFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQE 269

Query: 142 SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201
           +L +   M   G++ D  ++   I ACAN   ++ GK++H   +R+   +  F  NS++ 
Sbjct: 270 ALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHF-DNSLVT 328

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y + G+ + A  IF+ +P KD  SWN L+ GY   G +  A  +F+ M+E  +    +S
Sbjct: 329 LYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI----LS 384

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA----------------------- 298
           ++ +++  +  G  E+G K F  M+ +  +P +  ++                       
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLV 444

Query: 299 ------------CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
                        ++ +  + G++E+A ++ + +P   D+  W AL+ A   +G+
Sbjct: 445 KIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPC-LDSVSWNALIAALGQHGH 498



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 145/344 (42%), Gaps = 61/344 (17%)

Query: 92  DLFLTNALTDMYAKCGCLNLAQNVFN---ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
           D      +   Y   G + LA++VF    +S RD V YN +I G+S  +D   +++LF +
Sbjct: 79  DKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCK 138

Query: 149 MRLLGMKHDVVSFMGAISACANLAAI----KQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
           M+  G K D  ++    S  A LA +    KQ  + H   ++        V+N+++  Y+
Sbjct: 139 MKHEGFKPDDFTYA---SVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYS 195

Query: 205 RSGR----IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED------- 253
           R       +  A K+FD +P KD  SW T++ GY   G  D    L + M E+       
Sbjct: 196 RCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYN 255

Query: 254 -------------------------GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
                                    G+  D  +Y +++ AC++  L++ GK    ++ A 
Sbjct: 256 AMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGK----QVHAY 311

Query: 289 SVKPTEMHYA---CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
            ++  +  +     +V L  + G   +A  + + +P + D   W ALL      G V  G
Sbjct: 312 VLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAK-DLVSWNALLS-----GYVSSG 365

Query: 346 AWAAEHLFM--LKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
                 L    +K ++   ++++ +  AE G  +E  K+   MK
Sbjct: 366 HIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMK 409



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 12/151 (7%)

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
            +++  + +HG  I      H  + N ++D Y +S  +D A ++FD +   D  +  T++
Sbjct: 28  TSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMV 87

Query: 232 LGYGMLGEVDTAINLFE----AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
            GY   G++  A ++FE    +MR      D V Y A++T  SH          F +M+ 
Sbjct: 88  SGYCASGDIALARSVFEETPVSMR------DTVMYNAMITGFSHNNDGYSAINLFCKMKH 141

Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
           +  KP +  YA +  L G A +++D  + ++
Sbjct: 142 EGFKPDDFTYASV--LAGLALVVDDEKQCVQ 170



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     EA  +F  +   + VSWNA++A   Q+   ++A+ +  EM      P+ +T
Sbjct: 461 MYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRIT 520

Query: 61  LTNVLPACARGHFLRPGKE 79
              VL AC+    +  G++
Sbjct: 521 FLTVLTACSHAGLVDQGRK 539


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 144/416 (34%), Positives = 243/416 (58%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY        A  +F N+  +++VSW  M+  +A+N     A  L   M      P+ +T
Sbjct: 303 MYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRIT 362

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +++ ACA    L   +EIH+++   G   DL ++ AL  MYAKCG +  A+ VF+ + 
Sbjct: 363 YMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMP 422

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS++ +I  Y +    +E+   F  M+   ++ D V+++  ++AC +L A+  G E
Sbjct: 423 RRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGME 482

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I+   I+  L +H+ + N+++    + G ++ A  IFD +  +D  +WN +I GY + G 
Sbjct: 483 IYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGN 542

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+ LF+ M ++    + V+++ +L+ACS  G V++G+++F  + +   + PT   Y 
Sbjct: 543 AREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYG 602

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAG +++A  LIK++PV+P ++IW +LL ACRI+GN+++   AAE   M+ P 
Sbjct: 603 CMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPY 662

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y+ LS+MYA AG W+  +KVR++M+SR  +K  GC+W++   +V  FVV DR
Sbjct: 663 DGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDR 718



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 178/336 (52%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+      EA  +F ++  K +V+WNA++A +AQ     +A  L R+M      P+ +T
Sbjct: 101 LYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIIT 160

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL AC+    L  GKE+HA+++  G   D  +  AL  MY K G ++ A+ VF+ + 
Sbjct: 161 FLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLH 220

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD  ++N+++ GY+++ D  ++  LF  M+ +G+K + +SF+  +  C    A+  GK 
Sbjct: 221 IRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKA 280

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +   L   + VA S++  YT  G I+ A ++FD + V+D  SW  +I GY   G 
Sbjct: 281 VHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGN 340

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           ++ A  LF  M+E+G+  D ++Y+ I+ AC+    +   ++   ++         +    
Sbjct: 341 IEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTA 400

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +V +  + G ++DA ++   +P   D   W A++GA
Sbjct: 401 LVHMYAKCGAIKDARQVFDAMP-RRDVVSWSAMIGA 435



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 173/377 (45%), Gaps = 50/377 (13%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           +S T   +   C        GK++   II+ G   +++  N L  +Y+ CG +  A+ +F
Sbjct: 56  DSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIF 115

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           + +  +  V++N LI GY+Q     E+ +LF +M   G++  +++F+  + AC++ A + 
Sbjct: 116 DSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLN 175

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GKE+H   +     +   +  +++  Y + G +D A ++FD L ++D +++N ++ GY 
Sbjct: 176 WGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYA 235

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC-------------------------- 269
             G+ + A  LF  M++ G+  + +S+++IL  C                          
Sbjct: 236 KSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIR 295

Query: 270 ---------SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
                    +  G +E  ++ FD M+   V    + +  M++     G +EDA  L   +
Sbjct: 296 VATSLIRMYTTCGSIEGARRVFDNMKVRDV----VSWTVMIEGYAENGNIEDAFGLFATM 351

Query: 321 P---VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS----NMYAEA 373
               ++PD   +  ++ AC I  N+     A E    +     G  +L+S    +MYA+ 
Sbjct: 352 QEEGIQPDRITYMHIMNACAISANLN---HAREIHSQVDIAGFGTDLLVSTALVHMYAKC 408

Query: 374 GKWDEASKVRELMKSRE 390
           G   +A +V + M  R+
Sbjct: 409 GAIKDARQVFDAMPRRD 425


>gi|222630191|gb|EEE62323.1| hypothetical protein OsJ_17112 [Oryza sativa Japonica Group]
          Length = 591

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 151/416 (36%), Positives = 242/416 (58%), Gaps = 11/416 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +   PA A  +FH +AEKN+++W AM++  A+  L  ++  L  +M I     N+ T 
Sbjct: 168 YFECGSPASAERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQM-IRTVDANNATY 226

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR 121
           +  L ACAR    R G+++H  +++ G   DL + + L D+Y+KCG +  A  VF  S R
Sbjct: 227 SCALLACARSLAAREGQQVHGLVVKAGFEDDLHVESGLMDVYSKCGLMEDALTVFR-SCR 285

Query: 122 --DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD---VVSFMGAISACANLAAIKQ 176
             DEV   +++VG++Q     ++  LF+EM   G + D   V + +GA  A A  A    
Sbjct: 286 EPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSAVLGAFGASAPFA---L 342

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK+IH + I++    + +V N +++ Y++ G +  + ++FD +P K+S SWN++I  +  
Sbjct: 343 GKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVRVFDEMPSKNSVSWNSIIAAFAR 402

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G       LFE+M+ DG     V+++++L ACSH G  +KG +  + M +   V P   
Sbjct: 403 HGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRME 462

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYAC+VD+LGRAGL++DA   I++ P   +A +W AL+GAC  +GN E+G +AAE L +L
Sbjct: 463 HYACVVDMLGRAGLLDDAKSFIEDGPFTDNALLWQALMGACSFHGNSEVGKYAAEKLLLL 522

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
            P     Y+LLSN+Y+  G+WD+ +KV + M     +K+ G SW++   EV  FVV
Sbjct: 523 DPSCTAAYVLLSNIYSSEGRWDDRAKVMKRMSEMGLRKDTGKSWIELEKEVHSFVV 578



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 166/349 (47%), Gaps = 17/349 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSV 59
           MYA+  R  +A+ +F  +  ++ VSWN+++   A +R    AL L R M   +    +  
Sbjct: 66  MYARCGRREDAARVFDEMRVRDAVSWNSLI---AASRGAGDALALFRRMLRSDARACDRA 122

Query: 60  TLTNVLPACAR--GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           T T VL  CAR     L     +H  ++  G   ++ + NAL   Y +CG    A+ VF+
Sbjct: 123 TFTTVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFH 182

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            ++ ++ +++  +I G ++     ES SLF +M +  +  +  ++  A+ ACA   A ++
Sbjct: 183 GMAEKNVITWTAMISGMARAELYKESFSLFGQM-IRTVDANNATYSCALLACARSLAARE 241

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+++HG+ ++      L V + ++D Y++ G ++ A  +F      D      +++G+  
Sbjct: 242 GQQVHGLVVKAGFEDDLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQ 301

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT--E 294
            G  + A  LF  M   G   D  +  A+L A         GK    ++ A  +K     
Sbjct: 302 NGLEEKAFELFAEMVGAGNEIDENTVSAVLGAFGASAPFALGK----QIHALVIKRCFGV 357

Query: 295 MHYAC--MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
             Y C  +V++  + G + ++V++   +P +   + W +++ A   +G+
Sbjct: 358 NTYVCNGLVNMYSKCGELRESVRVFDEMPSKNSVS-WNSIIAAFARHGH 405



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 15/240 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K     +A  +F +  E + V    ++  FAQN LE KA +L  EM       +  T
Sbjct: 267 VYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENT 326

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++ VL A         GK+IHA +I++    + ++ N L +MY+KCG L  +  VF+ + 
Sbjct: 327 VSAVLGAFGASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVRVFDEMP 386

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N +I  +++    SE   LF  M+  G K   V+F+  + AC+++ + K+G E
Sbjct: 387 SKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLE 446

Query: 180 I-------HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA-SWNTLI 231
           I       +GV  R   +        ++D   R+G +D A    +  P  D+A  W  L+
Sbjct: 447 ILNSMSSQYGVLPRMEHYA------CVVDMLGRAGLLDDAKSFIEDGPFTDNALLWQALM 500



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 123/284 (43%), Gaps = 20/284 (7%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLT-----------NALTDMYAK 105
           N    + +L +C R   LR G  +HA +++   +F L  +           N+L  MYA+
Sbjct: 10  NYARFSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNSLVSMYAR 69

Query: 106 CGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMG 163
           CG    A  VF+ +  RD VS+N LI       D   +L+LF  M R      D  +F  
Sbjct: 70  CGRREDAARVFDEMRVRDAVSWNSLIAASRGAGD---ALALFRRMLRSDARACDRATFTT 126

Query: 164 AISACA--NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
            +S CA    A++     +HG+ +       + V N+++  Y   G    A ++F  +  
Sbjct: 127 VLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAE 186

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
           K+  +W  +I G         + +LF  M    V  +  +Y   L AC+      +G++ 
Sbjct: 187 KNVITWTAMISGMARAELYKESFSLFGQMIRT-VDANNATYSCALLACARSLAAREGQQV 245

Query: 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD 325
              +     +      + ++D+  + GLMEDA+ + ++   EPD
Sbjct: 246 HGLVVKAGFEDDLHVESGLMDVYSKCGLMEDALTVFRSCR-EPD 288


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 153/420 (36%), Positives = 248/420 (59%), Gaps = 8/420 (1%)

Query: 2   YAKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           Y++    +EA  +F  + E   ++ VSWNAM+    Q+R  ++A+ L REM       + 
Sbjct: 184 YSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDM 243

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC-GCLNLAQNVFN 117
            T+ +VL A      L  G++ H  +I+ G + +  + + L D+Y+KC G +   + VF 
Sbjct: 244 FTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFE 303

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSE-SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
            I+  D V +N +I G+S   D SE  L  F EM+  G + D  SF+   SAC+NL++  
Sbjct: 304 EITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPS 363

Query: 176 QGKEIHGVTIRKHL-HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
            GK++H + I+  + +  + V N+++  Y++ G +  A ++FD +P  ++ S N++I GY
Sbjct: 364 LGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGY 423

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
              G    ++ LFE M E  +  + +++IA+L+AC H G VE+G+KYF+ M+    ++P 
Sbjct: 424 AQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPE 483

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY+CM+DLLGRAG +++A ++I+ +P  P +  W  LLGACR +GNVEL   AA    
Sbjct: 484 AEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFL 543

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            L+P +   Y++LSNMYA A +W+EA+ V+ LM+ R  KK PGCSW++   +V  FV  D
Sbjct: 544 RLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAED 603



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 209/450 (46%), Gaps = 74/450 (16%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLE----LKALQLVREMPIHNEFPN 57
           YAK S    A  +F  I + +IVS+N ++A +A +R E    L+  + VRE+ +     +
Sbjct: 85  YAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYA-DRGECGPTLRLFEEVRELRLG---LD 140

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             TL+ V+ AC  G  +   +++H  ++  G +    + NA+   Y++ G L+ A+ VF 
Sbjct: 141 GFTLSGVITAC--GDDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFR 198

Query: 118 I----SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
                  RDEVS+N +IV   Q  +  E++ LF EM   G+K D+ +    ++A   +  
Sbjct: 199 EMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKD 258

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTR-SGRIDLANKIFDCLPVKDSASWNTLIL 232
           +  G++ HG+ I+   H +  V + ++D Y++ +G +    K+F+ +   D   WNT+I 
Sbjct: 259 LVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMIS 318

Query: 233 GYGMLGEV-DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
           G+ +  ++ +  +  F  M+ +G   D  S++ + +ACS+      GK    ++ A ++K
Sbjct: 319 GFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGK----QVHALAIK 374

Query: 292 PTEMHY------ACMVDLLGRAGLMEDAVKLIKNLP------------------------ 321
            +++ Y        +V +  + G + DA ++   +P                        
Sbjct: 375 -SDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESL 433

Query: 322 ----------VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC-----GYYILL 366
                     + P++  + A+L AC   G VE G    ++  M+K + C      +Y  +
Sbjct: 434 RLFELMLEKDIAPNSITFIAVLSACVHTGKVEEG---QKYFNMMKERFCIEPEAEHYSCM 490

Query: 367 SNMYAEAGKWDEASKVRELMKSREAKKNPG 396
            ++   AGK  EA ++ E M       NPG
Sbjct: 491 IDLLGRAGKLKEAERIIETMPF-----NPG 515



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 149/347 (42%), Gaps = 42/347 (12%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ------ 113
           T  N+L AC     L  GK +HA   +  +    +L+N  T +Y+KCG L+ AQ      
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 114 ---NVFN-----------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
              NVF+                       I   D VSYN LI  Y+   +C  +L LF 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFE 130

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           E+R L +  D  +  G I+AC +   +   +++H   +      +  V N++L  Y+R G
Sbjct: 131 EVRELRLGLDGFTLSGVITACGDDVGLV--RQLHCFVVVCGHDCYASVNNAVLACYSRKG 188

Query: 208 RIDLANKIFDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
            +  A ++F  +     +D  SWN +I+  G   E   A+ LF  M   G+  D  +  +
Sbjct: 189 FLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMAS 248

Query: 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR-AGLMEDAVKLIKNLPVE 323
           +LTA +    +  G+++   M            + ++DL  + AG M +  K+ + +   
Sbjct: 249 VLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITA- 307

Query: 324 PDANIWGALLGACRIYGNV-ELGAWAAEHLFM--LKPQHCGYYILLS 367
           PD  +W  ++    +Y ++ E G W    +     +P  C +  + S
Sbjct: 308 PDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTS 354



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +F  + E N VS N+M+A +AQ+ +E+++L+L   M   +  PNS+T
Sbjct: 391 MYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSIT 450

Query: 61  LTNVLPACARGHFLRPGKE 79
              VL AC     +  G++
Sbjct: 451 FIAVLSACVHTGKVEEGQK 469


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 147/416 (35%), Positives = 241/416 (57%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ K     +A  LF  + EKNI+SWN ++          +A +L   M        S  
Sbjct: 175 MHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRM 234

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              ++ A A    +  G+++H+  ++ G+  D+F+  AL DMY+KCG +  AQ VF+ + 
Sbjct: 235 FVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMP 294

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  V +N +I GY+      E+LS++ EMR  G+K D  +F   I  CA LA+++  K+
Sbjct: 295 EKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQ 354

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   +R      +    +++D Y++ GRI+ A  +FD +P K+  SWN LI GYG  G 
Sbjct: 355 AHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGR 414

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ +FE M  +G+  + V+++A+L+ACS+ GL ++G + F+ M  D  +KP  MHYA
Sbjct: 415 GVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYA 474

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM++LLGR GL+++A  LIK+ P +P  N+W ALL ACR++ N ELG +AAE L+ + P+
Sbjct: 475 CMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPE 534

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y++L N+Y  +G+ +EA+ V + +K R  +  P CSW++ + +   F+  D+
Sbjct: 535 KLSNYVVLLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDK 590



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 175/363 (48%), Gaps = 15/363 (4%)

Query: 41  KALQLVREMPIHNEFP-NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99
           +AL+L   + ++  +  +S T   ++ AC     +R  K++   +I  GL+ D +L N +
Sbjct: 113 EALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRV 172

Query: 100 TDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
             M+ KCG +  A+ +F+ +  ++ +S+N +I G     D  E+  LF  M         
Sbjct: 173 LLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGS 232

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
             F+  I A A L  I  G+++H  +++  +   +FVA +++D Y++ G I+ A  +FD 
Sbjct: 233 RMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQ 292

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P K +  WN++I GY + G  + A++++  MR+ GV  D  ++  I+  C+    +E  
Sbjct: 293 MPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHA 352

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
           K+    +         +    +VDL  + G +EDA  +   +P   +   W AL+     
Sbjct: 353 KQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMP-HKNVISWNALIAG--- 408

Query: 339 YGNVELGAWAAE------HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392
           YGN   G  A E      H  M+ P H  +  +LS   + +G  D   ++ E M SR+ K
Sbjct: 409 YGNHGRGVEAVEMFERMLHEGMV-PNHVTFLAVLSAC-SYSGLSDRGWEIFESM-SRDHK 465

Query: 393 KNP 395
             P
Sbjct: 466 IKP 468


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 147/421 (34%), Positives = 250/421 (59%), Gaps = 6/421 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+     +A  +F  +  + +V+WNAM++ +++     K++ L R++       +  T
Sbjct: 187 MYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYT 246

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL   A    +    ++H+ II +G   D F  NAL ++Y+KCG +  A  +F  I 
Sbjct: 247 YAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIP 306

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+ ++IVG+ Q+    E++ LF +M+L  ++ +  +F G + ACA+  A ++G+ 
Sbjct: 307 DQDVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRH 366

Query: 180 IHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            HG+ ++   L   + V ++++D Y++ G +  A + F  +P +D ASWN +I GY   G
Sbjct: 367 FHGLVLKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNG 426

Query: 239 EVDTAINLFEAM---REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTE 294
               A+ L+  M      G+  + V+++ +L ACSH GL+++G  YF EM     +KPT 
Sbjct: 427 AGMKALKLYNEMVLLGPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTA 486

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HY CMVDLLGRAGL+++A  LI  LP++PD  +WGALLGAC+++G+V++    AEHL+ 
Sbjct: 487 EHYTCMVDLLGRAGLLQEAEALILALPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYT 546

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            +P++   Y+LL+N Y + G+W EA ++RE+M++R  +K  GCSWV+    +  F+  D 
Sbjct: 547 NEPRNSSNYVLLANSYTDIGEWGEAVEIREVMEARGVEKTAGCSWVEIGTCMHSFLAGDX 606

Query: 415 M 415
           +
Sbjct: 607 L 607



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 169/339 (49%), Gaps = 17/339 (5%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K    +EA  LF   ++++  SWN +++   +N    + L    +M   +  P++ T 
Sbjct: 91  YFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTY 150

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             ++P C  G     G+++HA I++   + D F+   L  MYA+ G +  A+ VF+ +  
Sbjct: 151 AIIIPCCDLGF----GQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPS 206

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R  V++N +I  YS+     +S+ LF ++   G+  D  ++   ++  A    + +  ++
Sbjct: 207 RGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFEAMQV 266

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H + I +   +  F  N++++ Y++ G +  A+++F+ +P +D  SW  +I+G+   G +
Sbjct: 267 HSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHM 326

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY------FDEMQADSVKPTE 294
           + A+ LF  M+   +  +  ++  +L AC+     +KG+ +      F  + AD V  + 
Sbjct: 327 EEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSA 386

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                +VD+  + G M DA++  + +P E D   W  ++
Sbjct: 387 -----VVDMYSKCGEMGDALRAFQEMP-ERDIASWNGII 419



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 154/369 (41%), Gaps = 55/369 (14%)

Query: 97  NALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155
           N +   Y K G ++ A  +F+  S RD  S+NI++ G  +     E L+ F +MR   ++
Sbjct: 85  NTILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVR 144

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
            D  ++   I  C     +  G+++H   ++       F+  ++L  Y   G I  A K+
Sbjct: 145 PDNFTYAIIIPCCD----LGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKV 200

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS----- 270
           FD +P +   +WN +I  Y   G  D +I LF  +  +G+  D  +Y  +L   +     
Sbjct: 201 FDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQV 260

Query: 271 ------HGGLVEKG------------------------KKYFDEMQADSVKPTEMHYACM 300
                 H  ++E+G                         + F+E+    V    + +  +
Sbjct: 261 FEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDV----VSWTVI 316

Query: 301 VDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +    ++G ME+A+ L   +    +EP++  +G LLGAC      + G     H  +LK 
Sbjct: 317 IVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHF--HGLVLKF 374

Query: 358 QHCGYYILLS----NMYAEAGKWDEASKVRELMKSREAKKNPG--CSWVQTRDEVQDFVV 411
              G  +++     +MY++ G+  +A +  + M  R+     G  C + Q    ++   +
Sbjct: 375 GLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKL 434

Query: 412 NDRMKTFTP 420
            + M    P
Sbjct: 435 YNEMVLLGP 443



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 15/170 (8%)

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++  L  H++  N +L  Y  S  +  A+K+   +P     S+NT++ GY   G 
Sbjct: 37  LHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTILSGYFKFGL 96

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           V  AI LF+   +     D  S+  +L+ C     + +G  +F +M+  SV+P    YA 
Sbjct: 97  VSEAIKLFDGTSKR----DCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTYAI 152

Query: 300 MV---DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV-ELG 345
           ++   DL     +  D VK+  +L    DA I   LL   R+Y  V E+G
Sbjct: 153 IIPCCDLGFGQQVHADIVKVCSDL----DAFIGTNLL---RMYAEVGEIG 195


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 148/448 (33%), Positives = 255/448 (56%), Gaps = 40/448 (8%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM---PIHNE---FPNSVTLTNV 64
           A+ LF  +A+ N   +NAM+  +  N++ + A+ + ++M   P H E   FP+  T   V
Sbjct: 65  ANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNP-HGENPIFPDKFTFPFV 123

Query: 65  LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDE 123
           + +CA       GK++H  + + G   +  + N+L +MY KC  L+ A  VF  ++ RD 
Sbjct: 124 VKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDA 183

Query: 124 VSYNILIVG-------------------------------YSQTSDCSESLSLFSEMRLL 152
           VS+N LI G                               Y++    +++L  F  M+++
Sbjct: 184 VSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMV 243

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G++ D +S +  +  CA L A++ GK IH    +     ++ V N++++ Y + G ID  
Sbjct: 244 GIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQG 303

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
            ++FD +  +D  SW+T+I+G    G    AI LF+ M++  +    ++++ +LTAC+H 
Sbjct: 304 RRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHA 363

Query: 273 GLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
           GL+ +G +YF+ M+ D +++P   HY C+V+LLG +G ++ A++L+K +P +PD+ IWG+
Sbjct: 364 GLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGS 423

Query: 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
           LL +CR +GN+++   A EHL  L+P   G Y+LLSN+YA+ GKWD  S++R+LM+S+  
Sbjct: 424 LLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSM 483

Query: 392 KKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
           KK PGCS ++  + VQ+F   D  K F+
Sbjct: 484 KKTPGCSSIEVDNMVQEFASGDDSKPFS 511



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 134/286 (46%), Gaps = 34/286 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWN-------------------------------AM 29
           MY K     +A  +F  + E++ VSWN                               A+
Sbjct: 161 MYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAI 220

Query: 30  VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
           V+ +A+      AL+  R M +    P+ ++L +VLP CA+   L  GK IH    + G 
Sbjct: 221 VSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGF 280

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
             ++ + NAL +MYAKCG ++  + +F+ +  RD +S++ +IVG +      E++ LF E
Sbjct: 281 LRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQE 340

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH-LHTHLFVANSILDFYTRSG 207
           M+   ++  +++F+G ++ACA+   + +G        R + +   +     +++    SG
Sbjct: 341 MQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSG 400

Query: 208 RIDLANKIFDCLPVK-DSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           R+D A ++   +P K DS  W +L+      G +  A+   E + E
Sbjct: 401 RLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLE 446


>gi|302768953|ref|XP_002967896.1| hypothetical protein SELMODRAFT_89004 [Selaginella moellendorffii]
 gi|300164634|gb|EFJ31243.1| hypothetical protein SELMODRAFT_89004 [Selaginella moellendorffii]
          Length = 471

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 148/396 (37%), Positives = 234/396 (59%), Gaps = 5/396 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +      A  +F  IA++N+ SW  M+A +AQN  +  AL+L REM +H E  + + 
Sbjct: 43  MYGQCGAAEIARAVFDRIADRNVFSWTLMIAAYAQNGHDAAALRLFREMDLHGEPADRIV 102

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  +L  CAR   L  G+ IHARI+  G + D     A+ +MYA+CG L  A+ +F+ + 
Sbjct: 103 LVEILGVCARLELLAQGQTIHARIVALGFDADTVAATAIFNMYARCGFLRRARELFDRLE 162

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N +I  Y++T    ++L +F  +   G++ D +S+ G ++A A   ++ +G+ 
Sbjct: 163 EKSVVSWNAMITAYARTGQARQALDIFRRLDQEGIEADEMSYSGLLAAFAMRQSLDKGRI 222

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H           L VAN +++ Y + G ++ A +IFD +P K+  SWNT++  Y   G 
Sbjct: 223 LHARIKACGFEAMLQVANPLINMYGKCGCVEEARRIFDAVPSKNIVSWNTILAAYAGNGR 282

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
           V  A++LF  +    +  D +S+  +L ACSH GLV++   +   M++   ++P   HY+
Sbjct: 283 VTEALDLFAKI---AMPPDWISFCVVLQACSHAGLVDEAWDFLLSMRSQHGIEPRRAHYS 339

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            MV++ G+AG +E+A +LI  +PVEPDA IW +LLGAC+I+G+ E G  AA  +  LKP 
Sbjct: 340 AMVEIFGKAGKLEEAERLIAAMPVEPDAVIWRSLLGACKIHGDTERGTRAALKVIELKPD 399

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394
             G YILLSN++A AG+ DE  KVR+LMK R   K+
Sbjct: 400 ESGPYILLSNLHAAAGRLDELDKVRKLMKERRLGKS 435



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 159/352 (45%), Gaps = 40/352 (11%)

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSY 126
           C     L  GK IH  I+ +G   D FL N L  MY +CG   +A+ VF+ I+ R+  S+
Sbjct: 9   CGSRQLLGEGKRIHQHIVDRGHGDDRFLANLLVQMYGQCGAAEIARAVFDRIADRNVFSW 68

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
            ++I  Y+Q    + +L LF EM L G   D +  +  +  CA L  + QG+ IH   + 
Sbjct: 69  TLMIAAYAQNGHDAAALRLFREMDLHGEPADRIVLVEILGVCARLELLAQGQTIHARIVA 128

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
                    A +I + Y R G +  A ++FD L  K   SWN +I  Y   G+   A+++
Sbjct: 129 LGFDADTVAATAIFNMYARCGFLRRARELFDRLEEKSVVSWNAMITAYARTGQARQALDI 188

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
           F  + ++G+  D +SY  +L A +    ++KG+     ++A   +        ++++ G+
Sbjct: 189 FRRLDQEGIEADEMSYSGLLAAFAMRQSLDKGRILHARIKACGFEAMLQVANPLINMYGK 248

Query: 307 AGLMEDAVKLIKNLP-------------------------------VEPDANIWGALLGA 335
            G +E+A ++   +P                               + PD   +  +L A
Sbjct: 249 CGCVEEARRIFDAVPSKNIVSWNTILAAYAGNGRVTEALDLFAKIAMPPDWISFCVVLQA 308

Query: 336 CRIYGNVELGAWAAEHLFMLKPQHC-----GYYILLSNMYAEAGKWDEASKV 382
           C   G V+  AW  + L  ++ QH       +Y  +  ++ +AGK +EA ++
Sbjct: 309 CSHAGLVD-EAW--DFLLSMRSQHGIEPRRAHYSAMVEIFGKAGKLEEAERL 357



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/266 (19%), Positives = 103/266 (38%), Gaps = 53/266 (19%)

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C +   + +GK IH   + +      F+AN ++  Y + G  ++A  +FD +  ++  SW
Sbjct: 9   CGSRQLLGEGKRIHQHIVDRGHGDDRFLANLLVQMYGQCGAAEIARAVFDRIADRNVFSW 68

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC------------------ 269
             +I  Y   G    A+ LF  M   G   D +  + IL  C                  
Sbjct: 69  TLMIAAYAQNGHDAAALRLFREMDLHGEPADRIVLVEILGVCARLELLAQGQTIHARIVA 128

Query: 270 -----------------SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
                            +  G + + ++ FD ++  SV    + +  M+    R G    
Sbjct: 129 LGFDADTVAATAIFNMYARCGFLRRARELFDRLEEKSV----VSWNAMITAYARTGQARQ 184

Query: 313 AVKLIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS-- 367
           A+ + + L    +E D   +  LL A  +  +++ G      +   + + CG+  +L   
Sbjct: 185 ALDIFRRLDQEGIEADEMSYSGLLAAFAMRQSLDKG-----RILHARIKACGFEAMLQVA 239

Query: 368 ----NMYAEAGKWDEASKVRELMKSR 389
               NMY + G  +EA ++ + + S+
Sbjct: 240 NPLINMYGKCGCVEEARRIFDAVPSK 265


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 164/472 (34%), Positives = 257/472 (54%), Gaps = 64/472 (13%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           +A+  + AEA  LF  +  +N+V+WNAM+A + QN    +A+ L  EMP      NS++ 
Sbjct: 243 FARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPE----KNSISW 298

Query: 62  TNVLPACARGHFLRPGKEI--------------------------HARIIRKGLNF-DLF 94
           T V+    R   L   +++                           AR I   ++  D+ 
Sbjct: 299 TTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVV 358

Query: 95  LTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMR--- 150
             N +   Y++CG ++ A ++F  +  +D VS+N ++  Y+Q      ++ +F EM+   
Sbjct: 359 CWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKN 418

Query: 151 -------------------------LLG---MKHDVVSFMGAISACANLAAIKQGKEIHG 182
                                    L+G    K D  +F   +S+CA+LAA++ GK++H 
Sbjct: 419 IVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQ 478

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
           + ++    T LFV+N+++  Y + G I  A  +F  +   D  SWN+LI  Y + G    
Sbjct: 479 LVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGRE 538

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMV 301
           A+ LF  M  +GV  D V+++ IL+ACSH GL+++G K F  M QA +++P   HYACMV
Sbjct: 539 ALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMV 598

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361
           DLLGRAG +E+A +L++ + +  +A IWGALLGACRI+GN+EL  +AAE L   +P    
Sbjct: 599 DLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTS 658

Query: 362 YYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            Y+LLSNM AEAG+WDE ++VR LMK + A+K PG SW++ ++ V  F+  D
Sbjct: 659 NYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSED 710



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 185/393 (47%), Gaps = 36/393 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           +AK+ R ++A  LF  + ++NIVSWN+M+A +  N    +A QL  +MP  + +  ++ +
Sbjct: 56  FAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMI 115

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T     C    + R G+   AR +   L   ++    NA+   YAK    + A+ +F+ +
Sbjct: 116 T-----C----YTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAM 166

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D VS+N ++ GY++  +    L  F EM     + DVVS+   +     +  +    
Sbjct: 167 PAKDLVSWNSMLTGYTRNGEMRLGLQFFEEM----AERDVVSWNLMVDGFVEVGDLNSSW 222

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E       K  + +     ++L  + R G+I  A ++FD +P+++  +WN +I  Y    
Sbjct: 223 EF----FEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNC 278

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
            VD AI+LF  M E     + +S+  ++      G +++ ++  ++M   +V        
Sbjct: 279 HVDEAISLFMEMPEK----NSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQ----T 330

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF--MLK 356
            M+    +   M+DA ++   + +  D   W  ++      G ++     A HLF  M+K
Sbjct: 331 AMISGYVQNKRMDDARQIFNQISIR-DVVCWNTMIAGYSQCGRMD----EALHLFKQMVK 385

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
                +  ++++ YA+ G+ D A K+ E MK +
Sbjct: 386 KDIVSWNTMVAS-YAQVGQMDAAIKIFEEMKEK 417



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 134/295 (45%), Gaps = 22/295 (7%)

Query: 97  NALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155
           N++   +AK G ++ A+ +F+ +  R+ VS+N +I  Y       E+  LF +M      
Sbjct: 50  NSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMP----T 105

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
            D+ S+   I+       + + + +  +   K    +    N+++  Y ++ + D A ++
Sbjct: 106 RDLYSWTLMITCYTRNGELAKARNLFNLLPYK---WNPVCCNAMVAGYAKNRQFDEARRL 162

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275
           FD +P KD  SWN+++ GY   GE+   +  FE M E     D VS+  ++      G +
Sbjct: 163 FDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAER----DVVSWNLMVDGFVEVGDL 218

Query: 276 EKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
               ++F+++      P  + +  M+    R G + +A +L   +P+  +   W A++ A
Sbjct: 219 NSSWEFFEKIP----NPNTVSWVTMLCGFARFGKIAEARRLFDQMPIR-NVVAWNAMIAA 273

Query: 336 CRIYGNVELGAWAAEHLFMLKPQHCGY-YILLSNMYAEAGKWDEASKVRELMKSR 389
                +V+     A  LFM  P+     +  + N Y   GK DEA ++   M  R
Sbjct: 274 YVQNCHVD----EAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYR 324



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 15/175 (8%)

Query: 175 KQGKEIHGVTIRKHL-HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           K G+    + + +H+ H +    NS++  + ++GRI  A ++FD +P ++  SWN++I  
Sbjct: 27  KSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAA 86

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
           Y     V+ A  LF+ M       D  S+  ++T  +  G + K +  F+ +      P 
Sbjct: 87  YLHNDRVEEARQLFDKMPTR----DLYSWTLMITCYTRNGELAKARNLFNLL------PY 136

Query: 294 EMHYAC---MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
           + +  C   MV    +    ++A +L   +P + D   W ++L      G + LG
Sbjct: 137 KWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAK-DLVSWNSMLTGYTRNGEMRLG 190



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK    + A  LF +I   ++VSWN+++A +A N    +AL+L  +M +    P+ VT
Sbjct: 498 MYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVT 557

Query: 61  LTNVLPACARGHFLRPG 77
              +L AC+    +  G
Sbjct: 558 FVGILSACSHVGLIDQG 574



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 12/133 (9%)

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
           +++F  N  +    +SG+ID A K+F  +  K++ + N++I  +   G +  A  LF+ M
Sbjct: 13  SYVFRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGM 72

Query: 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA--CMVDLLGRAG 308
            +  +    VS+ +++ A  H   VE+ ++ FD+M      PT   Y+   M+    R G
Sbjct: 73  PQRNI----VSWNSMIAAYLHNDRVEEARQLFDKM------PTRDLYSWTLMITCYTRNG 122

Query: 309 LMEDAVKLIKNLP 321
            +  A  L   LP
Sbjct: 123 ELAKARNLFNLLP 135


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 147/403 (36%), Positives = 239/403 (59%), Gaps = 4/403 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQ-NRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGH 72
           LF+  ++++IVSW AM+A + + N LE      VR M   N FPN +T+ +++ +C    
Sbjct: 188 LFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVR-MIEENVFPNDITMLSLIISCGFVG 246

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
            ++ GK +HA I+R G    L L  AL DMY KCG +  A+ +F+ +  +D +++  +I 
Sbjct: 247 AVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMIS 306

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
            Y+Q +    +  LF +MR  G++ + ++ +  +S CA   A+  GK  H    ++ +  
Sbjct: 307 AYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEV 366

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            + +  +++D Y + G I  A ++F     +D  +WN ++ GYGM G  + A+ LF  M 
Sbjct: 367 DVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEME 426

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLM 310
             GV  + +++I  L ACSH GLV +GK  F++M  D  + P   HY CMVDLLGRAGL+
Sbjct: 427 TLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLL 486

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370
           ++A K+I+++PV P+  IWGA+L AC+I+ N  +G  AA  L  L+PQ+CGY +L+SN+Y
Sbjct: 487 DEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIY 546

Query: 371 AEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           A A +W++ + +R+ +K    KK PG S ++    V DF + D
Sbjct: 547 AAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGD 589



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 146/307 (47%), Gaps = 24/307 (7%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           +S  + +VL AC++    R GKEIH   ++ GL  D+F+ NAL  MY++CG L  A+ +F
Sbjct: 108 DSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLF 167

Query: 117 N-----------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
           +                        S R  VS+  +I GY + +D  E   LF  M    
Sbjct: 168 DKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEEN 227

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
           +  + ++ +  I +C  + A++ GK +H   +R      L +A +++D Y + G I  A 
Sbjct: 228 VFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSAR 287

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
            IFD +  KD  +W  +I  Y     +D A  LF  MR++GV  + ++ +++L+ C+  G
Sbjct: 288 AIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNG 347

Query: 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            ++ GK +   +    V+   +    ++D+  + G +  A +L     ++ D   W  ++
Sbjct: 348 ALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSE-AIDRDICTWNVMM 406

Query: 334 GACRIYG 340
               ++G
Sbjct: 407 AGYGMHG 413



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 130/238 (54%), Gaps = 11/238 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F ++  K++++W AM++ +AQ      A QL  +M  +   PN +T
Sbjct: 276 MYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELT 335

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + ++L  CA    L  GK  HA I ++G+  D+ L  AL DMYAKCG ++ AQ +F+ + 
Sbjct: 336 MVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAI 395

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD  ++N+++ GY       ++L LF+EM  LG+K + ++F+GA+ AC++   + +GK 
Sbjct: 396 DRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKG 455

Query: 180 IHGVTIRKHLHTHLFVAN-----SILDFYTRSGRIDLANKIFDCLPVKDS-ASWNTLI 231
           +      K +H    V        ++D   R+G +D A K+ + +PV  + A W  ++
Sbjct: 456 L----FEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAML 509



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 100/216 (46%), Gaps = 23/216 (10%)

Query: 142 SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201
           +L+ ++ MR L ++ D       + AC+ ++  + GKEIHG +++  L + +FV N+++ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNT----------------------LILGYGMLGE 239
            Y+  G +  A  +FD +  +D  SW+T                      +I GY    +
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           ++    LF  M E+ V  + ++ ++++ +C   G V+ GK+    +  +    +      
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATA 272

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +VD+ G+ G +  A  +  ++    D   W A++ A
Sbjct: 273 LVDMYGKCGEIRSARAIFDSMK-NKDVMTWTAMISA 307


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 149/405 (36%), Positives = 233/405 (57%), Gaps = 7/405 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           MY ++S   +A  +F  + + + + W ++++ F +N +  KAL     M   H   P+  
Sbjct: 206 MYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGF 265

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   VL AC     L+ GKE+HA++I  GL+ ++F+ ++L DMY KC  +N +Q VF+ +
Sbjct: 266 TFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRM 325

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           S ++ VS+  L+ GY Q  D    + +F E    G K D  SF   + ACA LAA++QGK
Sbjct: 326 SVKNLVSWTALLGGYCQNGDFESVIRIFRE----GKKVDTYSFGTVLRACAGLAAVRQGK 381

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+H   +++     +   ++++D Y + G ID A +IF  + V++  +WN++I G+   G
Sbjct: 382 EVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQNG 441

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
                  LF+ M E+G+  D +S++ +L ACSH GLV++GKKYF  M +   +KP   HY
Sbjct: 442 RGGEVFQLFDEMIEEGIRPDYISFVGVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIEHY 501

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CM+DLLGRAGL+E+A  LI+N     + ++W  LLGAC    +       A+    LKP
Sbjct: 502 NCMIDLLGRAGLLEEAENLIENANCRDEPSLWTVLLGACAASPHSATAERIAKKAVELKP 561

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQT 402
            H   Y+ L+N+Y   G+WD+A K+R LM  R   K PG SW++T
Sbjct: 562 DHHLSYVYLANVYRAVGRWDDAVKIRNLMTKRGVGKMPGTSWIET 606



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 158/316 (50%), Gaps = 6/316 (1%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EA  +F  +  K+++SW +M+  + +     K+L+L  EM      PN  TL+ V+ AC+
Sbjct: 114 EARRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACS 173

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNI 128
               LR GK  H  ++ +G + +  ++ AL DMY +   ++ A  VF  +   D + +  
Sbjct: 174 GLGDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTS 233

Query: 129 LIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
           +I  +++     ++L  F  M R  G+  D  +F   ++AC NL  +KQGKE+H   I  
Sbjct: 234 IISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITS 293

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            L  ++FV +S++D Y +   ++ +  +FD + VK+  SW  L+ GY   G+ ++ I +F
Sbjct: 294 GLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIF 353

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
                +G   D  S+  +L AC+    V +GK+   +          +  + +VDL  + 
Sbjct: 354 ----REGKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKC 409

Query: 308 GLMEDAVKLIKNLPVE 323
           G ++ A ++   + V 
Sbjct: 410 GCIDFAYRIFVRMSVR 425



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 145/284 (51%), Gaps = 4/284 (1%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC-LNLAQNVFN-ISF 120
           ++L  C +      G + H+  I+ GL+ D F+ N+L  +Y K G  L  A+ VF+ + +
Sbjct: 65  SLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFDGLFY 124

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D +S+  +I GY +     +SL LF EM  LG++ +  +    I AC+ L  ++ GK  
Sbjct: 125 KDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCF 184

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HGV + +    +  ++ +++D Y R+  +D A  +F  LP  D+  W ++I  +      
Sbjct: 185 HGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRNDVY 244

Query: 241 DTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           D A+  F +M R+ G+  D  ++  +LTAC + G +++GK+   ++    +       + 
Sbjct: 245 DKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFVESS 304

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           +VD+ G+  L+  +  +   + V+   + W ALLG     G+ E
Sbjct: 305 LVDMYGKCRLVNQSQCVFDRMSVKNLVS-WTALLGGYCQNGDFE 347


>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
 gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 147/414 (35%), Positives = 241/414 (58%), Gaps = 2/414 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K     +   LF  ++E++ VS+N M++  + NR    ALQL R+M        ++  
Sbjct: 279 YSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLGFDRRTLPY 338

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
            ++L        ++ G++IHA++I  GL  + F+ NAL DMY+KCG L+ A+ +F   S 
Sbjct: 339 ASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFAYKSD 398

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  +S+  LI G  Q     E+L LF +MR  G+  D  +    + + ++LA I  G+++
Sbjct: 399 KTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIGRQL 458

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H    +      +F  +++LD Y + G +D A + F+ +P K+S +WN +I  Y   G+ 
Sbjct: 459 HAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQYGQA 518

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             AI +F++M   G+  DPV+++++L AC H GL E+  KYFD M+   S+ P + HY+C
Sbjct: 519 KNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFDLMRYYYSMSPWKEHYSC 578

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           ++D LGRAG  +   K+I  +P E D  IW ++L +CRIYGN +L   AAE LF + P  
Sbjct: 579 VIDTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRIYGNQDLATVAAEKLFTMVPTD 638

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
              Y++LSN+YA+AG W+ A++V+++M+ R  KK  G SWV+ + ++  F  ND
Sbjct: 639 ATAYVILSNIYAKAGNWEGAARVKKIMRDRGVKKESGNSWVEIKQKIYMFSSND 692



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 166/343 (48%), Gaps = 2/343 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K    A A  +F  +  ++ +++NAM+   ++     +AL+L   M       +  T 
Sbjct: 178 YCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGRHGEALELFAAMRREGVDTSHFTF 237

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           +++L        L  G++IH   +R   + ++F+ NAL D Y+KC  L   + +F+ +S 
Sbjct: 238 SSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFVNNALLDFYSKCDSLGDLKQLFDEMSE 297

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VSYN++I   S       +L LF +M+ LG     + +   +S    L  IK G++I
Sbjct: 298 RDNVSYNVMISACSWNRCGGMALQLFRDMQTLGFDRRTLPYASLLSVAGALPHIKIGRQI 357

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   I   L    FV N+++D Y++ G +D A  IF     K + SW  LI G    G+ 
Sbjct: 358 HAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFAYKSDKTAISWTALITGCVQNGQN 417

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           + A+ LF  MR  G+  D  +  +I+ + S   ++  G++    +      P+    + +
Sbjct: 418 EEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIGRQLHAYLTKSGHMPSVFSGSAL 477

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           +D+  + G +++A++    +P E ++  W A++ A   YG  +
Sbjct: 478 LDMYAKCGCLDEAIRTFNEMP-EKNSITWNAVISAYAQYGQAK 519



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 152/328 (46%), Gaps = 12/328 (3%)

Query: 20  EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVL--PACARGHFLRP 76
            +N  +W  M+     +     A+ L R+M    E  P+ VT+T VL  P C  G     
Sbjct: 99  RRNAKTWTIMMRMLPADGRGSDAVSLFRDMLREGEASPDDVTITTVLNVPGCDVG----- 153

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQ 135
              +H  + + G    + + N L D Y K G +  A+ VF  +  RD ++YN +I+G S+
Sbjct: 154 --TLHPVVTKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSR 211

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
                E+L LF+ MR  G+     +F   ++    +  +  G++IHG+ +R +   ++FV
Sbjct: 212 QGRHGEALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFV 271

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            N++LDFY++   +    ++FD +  +D+ S+N +I           A+ LF  M+  G 
Sbjct: 272 NNALLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLGF 331

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
               + Y ++L+       ++ G++   ++    +   +     ++D+  + G++ DA K
Sbjct: 332 DRRTLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGML-DAAK 390

Query: 316 LIKNLPVEPDANIWGALLGACRIYGNVE 343
            I     +  A  W AL+  C   G  E
Sbjct: 391 TIFAYKSDKTAISWTALITGCVQNGQNE 418



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 131/271 (48%), Gaps = 9/271 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F   ++K  +SW A++    QN    +ALQL  +M      P+  T
Sbjct: 379 MYSKCGMLDAAKTIFAYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRAT 438

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++++ + +    +  G+++HA + + G    +F  +AL DMYAKCGCL+ A   FN + 
Sbjct: 439 CSSIMKSSSSLAVIGIGRQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMP 498

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ +++N +I  Y+Q      ++ +F  M   G+  D V+F+  ++AC +    ++  +
Sbjct: 499 EKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMK 558

Query: 180 IHGVTIRKHLHTHLFVA--NSILDFYTRSGRIDLANKIFDCLPVKDSA-SWNTLILGYGM 236
              + +R +     +    + ++D   R+G  D   K+ D +P +D    W++++    +
Sbjct: 559 YFDL-MRYYYSMSPWKEHYSCVIDTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRI 617

Query: 237 LGEVDTAI----NLFEAMREDGVGYDPVSYI 263
            G  D A      LF  +  D   Y  +S I
Sbjct: 618 YGNQDLATVAAEKLFTMVPTDATAYVILSNI 648


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 142/418 (33%), Positives = 239/418 (57%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            Y+K+  P  +  +FH+   K+  +W++++++FAQN L L +L   R M      P+   
Sbjct: 64  FYSKTHLPYSSLQIFHDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHI 123

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +   +C     L   K +H   ++   + D+F+ +++ DMYAKCG +  A NVF+ + 
Sbjct: 124 FPSATKSCGILSSLPVAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMP 183

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM--GAISACANLAAIKQG 177
           +R+ VS++ LI GY Q  +  ESL LF    +      V  F     +  C     ++ G
Sbjct: 184 YRNVVSWSGLIYGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMG 243

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + IHG++ +    +  FVA+S++  Y++ G ++ A  +F+ + V++   WN +++     
Sbjct: 244 RLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQH 303

Query: 238 GEVDTAINLFEAMRE-DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
              D    LF+ M+   G+  + ++++ +L ACSH GLVEKGK YF+ M+   ++P   H
Sbjct: 304 AHTDKTFELFDKMKSVGGMKANFITFLCVLYACSHAGLVEKGKYYFELMKDYGIEPGTQH 363

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y+ MVDLLGRAG + DAVKLI+ +P+EP  ++WGALL  CR++GN +L ++ A+ +  L 
Sbjct: 364 YSTMVDLLGRAGKLNDAVKLIEEMPMEPTESVWGALLTGCRLHGNTKLASYVADRVSELG 423

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               G +++LSN YA AG+W+EA+K R++M+ R  KK  G SWV+  + +  F   DR
Sbjct: 424 SVSSGLHVMLSNAYAAAGRWEEAAKARKMMRDRGIKKETGLSWVEEGNRIHTFAAGDR 481



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 158/340 (46%), Gaps = 6/340 (1%)

Query: 53  NEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
           N+ P    L N L +      L  G ++HA II+ GL     L++ L + Y+K      +
Sbjct: 15  NQQPLYRNLCNTLLSLTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSS 74

Query: 113 QNVFNIS-FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
             +F+ S  +   +++ +I  ++Q      SL+ F  M   G+  D   F  A  +C  L
Sbjct: 75  LQIFHDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGIL 134

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
           +++   K +H   ++   H  +FV +S++D Y + G I  A+ +FD +P ++  SW+ LI
Sbjct: 135 SSLPVAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLI 194

Query: 232 LGYGMLGEVDTAINLFEA--MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS 289
            GY  LGE D ++ LF+   + E+  G +  +  ++L  C    L++ G+         S
Sbjct: 195 YGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTS 254

Query: 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAA 349
              +    + ++ L  + G++E+A  + + + V  +  +W A+L AC  + + +      
Sbjct: 255 FDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVR-NLGMWNAMLIACAQHAHTDKTFELF 313

Query: 350 EHLFMLKPQHCGYYILLSNMYA--EAGKWDEASKVRELMK 387
           + +  +      +   L  +YA   AG  ++     ELMK
Sbjct: 314 DKMKSVGGMKANFITFLCVLYACSHAGLVEKGKYYFELMK 353


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 145/417 (34%), Positives = 245/417 (58%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A+ +F  ++ +++V+W+AMVA +A+N    +AL L R+M +    PN VT
Sbjct: 105 MYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVT 164

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L + L ACA    LR G  +H R+  +G+   + +  AL ++Y KCG +  A   F  I 
Sbjct: 165 LVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIV 224

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ V+++ +   Y++     +++ +   M L G+  +  +F+  + ACA +AA+KQG+ 
Sbjct: 225 EKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRR 284

Query: 180 IHGVT--IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           IH  T  +   L + ++V  ++++ Y++ G + LA  +FD +   D   WN+LI      
Sbjct: 285 IHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQH 344

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G+ + A+ LFE MR +G+    +++ ++L ACSH G++++G+K+F     D  + P   H
Sbjct: 345 GQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEH 404

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           + CMVDLLGRAG + D+  L+ ++P EP    W A LGACR Y N++   WAAE+LF L 
Sbjct: 405 FGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLD 464

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P+    Y+LLSNMYA+AG+W + +++R+ M+     K  G SW++ +D V +F+  D
Sbjct: 465 PRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGD 521



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 134/273 (49%), Gaps = 1/273 (0%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL 74
           F  +   +IVSWNA++A +  NR   +     R M +    P  V ++  L AC     +
Sbjct: 18  FDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGEVGISIFLSACTDAREI 77

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG-CLNLAQNVFNISFRDEVSYNILIVGY 133
             G+ I   I+  G+  +  +  AL  MY K G C + A     +S RD V+++ ++  Y
Sbjct: 78  TIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAY 137

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           ++     E+L LF +M L G+  + V+ +  + ACA+L  ++ G  +H     + + + +
Sbjct: 138 ARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGV 197

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
            V  ++++ Y + GRI+ A + F  +  K+  +W+ +   Y        AI +   M  +
Sbjct: 198 VVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLE 257

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
           G+  +  +++++L AC+    +++G++  +  Q
Sbjct: 258 GLVPNSTTFVSVLDACAAIAALKQGRRIHERTQ 290



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 2/234 (0%)

Query: 103 YAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
           Y++ G +   +  F+ +   D VS+N LI  Y    D       F  M L G+    V  
Sbjct: 5   YSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGEVGI 64

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
              +SAC +   I  G+ I    +   +     V  +++  Y + G    A  +F  +  
Sbjct: 65  SIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSH 124

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
           +D  +W+ ++  Y   G    A+ LF  M  DGV  + V+ ++ L AC+  G +  G   
Sbjct: 125 RDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALM 184

Query: 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
              ++A  ++   +    +V+L G+ G +E AV+    + VE +   W A+  A
Sbjct: 185 HQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQI-VEKNVVAWSAISAA 237



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 1/137 (0%)

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
           +L  Y++ G I    K FD +PV D  SWN LI  Y    + D     F  M   G+   
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
            V     L+AC+    +  G+     +    ++   +    +V + G+ G   DA  +  
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 319 NLPVEPDANIWGALLGA 335
            +    D   W A++ A
Sbjct: 121 RMS-HRDVVAWSAMVAA 136


>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 800

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 148/413 (35%), Positives = 250/413 (60%), Gaps = 2/413 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+  + +    + H I ++NI+SWN +++ +A   L  +AL +  +M    + P+S +L
Sbjct: 346 YAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSL 405

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           ++ + ACA    L  G +IH   I++ +  D F+ N+L DMY+KCG ++LA  +F+ I  
Sbjct: 406 SSSISACANVGLLWLGHQIHGYAIKRHI-LDEFVQNSLIDMYSKCGHVDLAYLIFDRIQS 464

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  V++N +I G+SQ  +  E++ LF +M L  +  + V+F+ AI AC+++  +++GK +
Sbjct: 465 KSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWL 524

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   I   +   LF+  +++D Y + G + +A+++FD +  +   SW+ +I G GM G++
Sbjct: 525 HHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMSERSVVSWSAMIGGCGMHGDI 584

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           D AI+LF  M +  +  + ++++ IL+ACSH G VE+GK YF+ M+   V+P   H+ACM
Sbjct: 585 DAAISLFAEMIQREMKPNDITFMNILSACSHSGYVEEGKFYFNSMKNFEVEPNLEHFACM 644

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           VDLL RAG +++A ++I ++P   +A+IWGALL  CRI+  +++       L  ++    
Sbjct: 645 VDLLSRAGDLDEAYRIINSMPFPAEASIWGALLNGCRIHQRMDMIRNIERDLLDMRTDDT 704

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           GYY LLSN+YAE G WD + KVR  MK    KK PG S ++   +V  F   D
Sbjct: 705 GYYTLLSNIYAEEGNWDVSRKVRSAMKGIGLKKVPGYSTIELDKKVYRFGAGD 757



 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 207/387 (53%), Gaps = 17/387 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++    + A  +F N+  ++I SW AM++ + ++R   +ALQ+  EM      PN+VT
Sbjct: 244 MYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVT 303

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  VL +CA  + LR GK +H   ++     D  L  AL + YA+ G L+  + V + I 
Sbjct: 304 IMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPALIEYYAQFGKLSYCEKVLHTIG 363

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ +S+N+LI  Y+      E+L +F +M+  G   D  S   +ISACAN+  +  G +
Sbjct: 364 KRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANVGLLWLGHQ 423

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  I++H+    FV NS++D Y++ G +DLA  IFD +  K   +WN++I G+  +G 
Sbjct: 424 IHGYAIKRHILDE-FVQNSLIDMYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGN 482

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              AI LF+ M  + +  + V+++  + ACSH G +EKGK    ++ A  VK        
Sbjct: 483 SLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTA 542

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM----- 354
           ++D+  + G +  A ++  ++  E     W A++G C ++G+++    AA  LF      
Sbjct: 543 LIDMYAKCGDLRIAHRVFDSMS-ERSVVSWSAMIGGCGMHGDID----AAISLFAEMIQR 597

Query: 355 -LKPQHCGYYILLS----NMYAEAGKW 376
            +KP    +  +LS    + Y E GK+
Sbjct: 598 EMKPNDITFMNILSACSHSGYVEEGKF 624



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 138/262 (52%), Gaps = 5/262 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  I  K++V+WN+M+  F+Q    L+A++L  +M ++    N VT
Sbjct: 445 MYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVT 504

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
               + AC+    L  GK +H ++I  G+  DLF+  AL DMYAKCG L +A  VF+ +S
Sbjct: 505 FLTAIQACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMS 564

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS++ +I G     D   ++SLF+EM    MK + ++FM  +SAC++   +++GK 
Sbjct: 565 ERSVVSWSAMIGGCGMHGDIDAAISLFAEMIQREMKPNDITFMNILSACSHSGYVEEGKF 624

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGMLG 238
                    +  +L     ++D  +R+G +D A +I + +P    AS W  L+ G  +  
Sbjct: 625 YFNSMKNFEVEPNLEHFACMVDLLSRAGDLDEAYRIINSMPFPAEASIWGALLNGCRIHQ 684

Query: 239 EVDTAINL---FEAMREDGVGY 257
            +D   N+      MR D  GY
Sbjct: 685 RMDMIRNIERDLLDMRTDDTGY 706



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 138/275 (50%), Gaps = 14/275 (5%)

Query: 31  ANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLN 90
           +NF    + L    + +++PI +        ++VL ACA    L  G+E+H RII+ GL+
Sbjct: 77  SNFCGEAISLYNKMIYKQIPISD-----FIFSSVLRACAGFGNLDVGEEVHGRIIKYGLD 131

Query: 91  FDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
            D  +  +L  MY   GCL+ A+ VF N++ RD VS++ +I  Y    + SE L +F  +
Sbjct: 132 VDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRLL 191

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
               ++ D V+ +    AC  L  ++  K +HG  IR+ + T   + ++++  Y+R    
Sbjct: 192 VSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDALVLMYSRCDDF 251

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
             A +IF  +  +  ASW  +I  Y        A+ +F  M E  V  + V+ +A+L++C
Sbjct: 252 SSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSC 311

Query: 270 SHGGLVEKGK-------KYFDEMQADSVKPTEMHY 297
           +   L+ +GK       K+ D +  DS+ P  + Y
Sbjct: 312 AGFNLLREGKSVHCYAVKHID-LDDDSLGPALIEY 345



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 143/281 (50%), Gaps = 1/281 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY      + A  +F N+  +++VSW+++++ +  N    + L++ R +   +   +SVT
Sbjct: 143 MYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRLLVSQDVELDSVT 202

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + ++  AC    FLR  K +H  IIR+ +     L +AL  MY++C   + A+ +F+  F
Sbjct: 203 MLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDALVLMYSRCDDFSSAERIFSNMF 262

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R   S+  +I  Y+++    ++L +F EM    +  + V+ M  +S+CA    +++GK 
Sbjct: 263 NRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLLREGKS 322

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++        +  +++++Y + G++    K+   +  ++  SWN LI  Y   G 
Sbjct: 323 VHCYAVKHIDLDDDSLGPALIEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGL 382

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
              A+ +F  M+  G   D  S  + ++AC++ GL+  G +
Sbjct: 383 FKEALGIFVQMQRQGQIPDSFSLSSSISACANVGLLWLGHQ 423



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 3/208 (1%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR--DEVSYNILIV 131
           LRP   +H+ ++  GL+ D   +  L + Y++ GCL  ++ VF  +F+  D   + +LI 
Sbjct: 14  LRPLTLLHSHLLVTGLHHDPQASTKLIESYSQIGCLQSSKLVFE-TFQNPDSFMWAVLIK 72

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
            +  ++ C E++SL+++M    +      F   + ACA    +  G+E+HG  I+  L  
Sbjct: 73  CHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVHGRIIKYGLDV 132

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
              V  S+L  Y   G +  A K+FD +  +D  SW+++I  Y   GE    + +F  + 
Sbjct: 133 DHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRLLV 192

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGK 279
              V  D V+ ++I  AC   G +   K
Sbjct: 193 SQDVELDSVTMLSIAGACGELGFLRLAK 220


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 245/450 (54%), Gaps = 42/450 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++    EA  LF  +  +N +SW  M+A +AQN    +AL L++ +  +   P+  +L
Sbjct: 362 YMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSL 421

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T+   AC+    L  G+++H+  ++ G  F+ ++ NAL  MY KC  +   + VFN +  
Sbjct: 422 TSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRV 481

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA------------- 167
           +D VS+N  I    Q +   ++  +F  M    +  DVVS+   ISA             
Sbjct: 482 KDTVSWNSFIAALVQNNMLEDARHIFDNM----LSRDVVSWTTIISAYAQAERGDEAVEF 537

Query: 168 ----------------------CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
                                 C  L + K G++IH V I+  + + L VAN+++  Y +
Sbjct: 538 FKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFK 597

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
            G  D ++K+FD +  +D  +WNT I G    G    AI ++E M   GV  + V+++ +
Sbjct: 598 CGCAD-SHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGL 656

Query: 266 LTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           L ACSH GLV++G ++F  M  D  + P   HYACMVDLLGR G ++ A K I ++P+EP
Sbjct: 657 LNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEP 716

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
           D  IW ALLGAC+I+ N E+G  AAE LF  +P + G Y++LSN+Y+  G W E +++R+
Sbjct: 717 DTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRK 776

Query: 385 LMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +MK R   K PGCSW+Q R++V  FV  D+
Sbjct: 777 IMKQRGVSKEPGCSWMQIRNKVHSFVTGDK 806



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 181/402 (45%), Gaps = 28/402 (6%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y  S +  +A  LF  + ++N+V+W  M++ + +     K   + R M      P+    
Sbjct: 167 YCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNF 226

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK-CGCLNLAQNVFN-IS 119
            +VL A      L   + +   +++ G   D+ +  ++ ++Y +    L++A   F+ + 
Sbjct: 227 ASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMV 286

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+E +++ +I   S       +++++        +  V S     +    LA  + G+ 
Sbjct: 287 ERNEYTWSTMIAALSHGGRIDAAIAVYG-------RDPVKSIPSQTALLTGLA--RCGRI 337

Query: 180 IHGVTIRKHLHTHLFVA-NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
                + + +   + V+ N+++  Y ++G +D A ++FD +P +++ SW  +I GY   G
Sbjct: 338 TEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNG 397

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM--H 296
             + A++L +A+  +G+     S  +   ACSH G +E G+    ++ + +VK       
Sbjct: 398 RSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGR----QVHSLAVKAGCQFNS 453

Query: 297 YAC--MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF- 353
           Y C  ++ + G+   ME   ++   + V+ D   W + + A      +E     A H+F 
Sbjct: 454 YVCNALISMYGKCRNMEYVRQVFNRMRVK-DTVSWNSFIAALVQNNMLE----DARHIFD 508

Query: 354 -MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394
            ML      +  ++S  YA+A + DEA +  + M     K N
Sbjct: 509 NMLSRDVVSWTTIIS-AYAQAERGDEAVEFFKTMLHEHEKPN 549



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 161/370 (43%), Gaps = 59/370 (15%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
           A+  R  EA  +F  +  ++I++WN+M++ +  + +   A  L   +   N    ++ L+
Sbjct: 44  ARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLS 103

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
                     + R G+ + AR +  G+   +    NA+   Y + G + +A+ +F+ +  
Sbjct: 104 G---------YARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPS 154

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEM----------------------------RLL 152
           RD  S+N ++ GY  +    ++ +LF +M                            R++
Sbjct: 155 RDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMM 214

Query: 153 ---GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR-SGR 208
              G   D  +F   +SA   L  +   + +  + ++    + + +  SIL+ YTR +  
Sbjct: 215 HHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASA 274

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI----A 264
           +D+A K FD +  ++  +W+T+I      G +D AI ++        G DPV  I    A
Sbjct: 275 LDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVY--------GRDPVKSIPSQTA 326

Query: 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           +LT  +  G + + +  F+++      P  + +  M+    + G++++A +L   +P   
Sbjct: 327 LLTGLARCGRITEARILFEQIP----DPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRN 382

Query: 325 DANIWGALLG 334
             +  G + G
Sbjct: 383 TISWAGMIAG 392


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 138/323 (42%), Positives = 204/323 (63%), Gaps = 2/323 (0%)

Query: 94  FLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL 152
            + NAL DMYAK G  + A +VF  ++ +D +S+  L+ G        E+L LF EMR++
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G+  D +     +SACA L  ++ GK++H   ++  L + L V NS++  Y + G I+ A
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
           NK+FD + ++D  +W  LI+GY   G    ++N +  M   GV  D +++I +L ACSH 
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHA 182

Query: 273 GLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
           GLVE G+ YF  M+    +KP   HYACM+DLLGR+G + +A +L+  + V+PDA +W A
Sbjct: 183 GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKA 242

Query: 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
           LL ACR++GNVELG  AA +LF L+P++   Y+LLSN+Y+ AGKW+EA+K R LMK R  
Sbjct: 243 LLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGV 302

Query: 392 KKNPGCSWVQTRDEVQDFVVNDR 414
            K PGCSW++   +V  F+  DR
Sbjct: 303 SKEPGCSWIEMSSKVHRFMSEDR 325



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 142/270 (52%), Gaps = 19/270 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F  + +K+++SW ++V     N    +AL+L  EM I    P+ + 
Sbjct: 11  MYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIV 70

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  VL ACA    L  GK++HA  ++ GL   L + N+L  MYAKCGC+  A  VF+ + 
Sbjct: 71  IAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSME 130

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK- 178
            +D +++  LIVGY+Q     ESL+ +++M   G+K D ++F+G + AC++   ++ G+ 
Sbjct: 131 IQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRS 190

Query: 179 ------EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
                 E++G+      +        ++D   RSG++  A ++ + + V+ D+  W  L+
Sbjct: 191 YFQSMEEVYGIKPGPEHYA------CMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALL 244

Query: 232 LGYGMLGEVD----TAINLFEAMREDGVGY 257
               + G V+     A NLFE   ++ V Y
Sbjct: 245 AACRVHGNVELGERAANNLFELEPKNAVPY 274


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 149/421 (35%), Positives = 242/421 (57%), Gaps = 2/421 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+    +A  +F  +  ++++  NA+++  +      +AL L  E+       N  T
Sbjct: 347 MYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTT 406

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL + A        +++HA  ++ G  FD  + N L D Y KC CL+ A  VF   S
Sbjct: 407 LAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECS 466

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D ++   +I   SQ      ++ LF EM   G++ D       ++ACA+L+A +QGK+
Sbjct: 467 SGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I++   +  F  N+++  Y + G I+ A   F  LP +   SW+ +I G    G 
Sbjct: 527 VHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGH 586

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+ LF  M ++G+  + ++  ++L AC+H GLV++ K+YF+ M +   +  TE HY+
Sbjct: 587 GKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYS 646

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLGRAG ++DA++L+ ++P + +A+IWGALLGA R++ + ELG  AAE LF+L+P+
Sbjct: 647 CMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPE 706

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
             G ++LL+N YA AG W+E +KVR+LMK    KK P  SW++ +D+V  F+V D+    
Sbjct: 707 KSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPM 766

Query: 419 T 419
           T
Sbjct: 767 T 767



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 165/341 (48%), Gaps = 14/341 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH----NEFPN 57
           Y+K  RP  A   F  I +   VSW+++V  ++ N L   A+Q    M       NEF  
Sbjct: 47  YSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFAL 106

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
            V L  V  A       R G ++HA  +  G   D+F+ NAL  MY   G ++ A+ VFN
Sbjct: 107 PVVLKCVPDA-------RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 118 --ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
              S R+ VS+N L+  Y +   C +++ +F EM   G++     F   ++AC     I+
Sbjct: 160 EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIE 219

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G+++H + +R      +F AN+++D Y + GR+D+A+ IF+ +P  D  SWN LI G  
Sbjct: 220 AGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCV 279

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
           + G    AI L   M+  G+  +  +  +IL ACS  G  + G++    M   +    + 
Sbjct: 280 LNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDY 339

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
               +VD+  +   ++DA K+   +    D  +  AL+  C
Sbjct: 340 IGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCNALISGC 379



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 162/342 (47%), Gaps = 2/342 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  R   AS +F  + + ++VSWNA+++    N  + +A++L+ +M      PN  T
Sbjct: 246 MYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFT 305

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L+++L AC+       G++IH  +I+   + D ++   L DMYAK   L+ A+ VF+  F
Sbjct: 306 LSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMF 365

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +  N LI G S      E+LSLF E+R  G+  +  +    + + A+L A    ++
Sbjct: 366 HRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQ 425

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + ++        V N ++D Y +   +  AN++F+     D  +  ++I        
Sbjct: 426 VHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDH 485

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + AI LF  M   G+  DP    ++L AC+     E+GK+    +              
Sbjct: 486 GEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNA 545

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           +V    + G +EDA     +LP E     W A++G    +G+
Sbjct: 546 LVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGH 586



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 169/375 (45%), Gaps = 47/375 (12%)

Query: 19  AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78
           +E+N VSWN +++ + +N     A+Q+  EM      P     + V+ AC     +  G+
Sbjct: 163 SERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGR 222

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTS 137
           ++HA ++R G + D+F  NAL DMY K G +++A  +F  +   D VS+N LI G     
Sbjct: 223 QVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 282

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
               ++ L  +M+  G+  +V +    + AC+   A   G++IHG  I+ +  +  ++  
Sbjct: 283 HDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGV 342

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
            ++D Y ++  +D A K+FD +  +D    N LI G    G  D A++LF  +R++G+G 
Sbjct: 343 GLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGV 402

Query: 258 DPVSYIAILTACSH--------------------------GGLVEK---------GKKYF 282
           +  +  A+L + +                            GL++            + F
Sbjct: 403 NRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVF 462

Query: 283 DEMQADSVKPTEMHYAC--MVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACR 337
           +E  +  +       AC  M+  L +    E A+KL   +    +EPD  +  +LL AC 
Sbjct: 463 EECSSGDI------IACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACA 516

Query: 338 IYGNVELGAWAAEHL 352
                E G     HL
Sbjct: 517 SLSAYEQGKQVHAHL 531



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 126/284 (44%), Gaps = 8/284 (2%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T++  L   A    L PG  +HA +++ G +   F  N L   Y+KC     A+  F+ I
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHASLLKSG-SLASF-RNHLISFYSKCRRPCCARRFFDEI 63

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
                VS++ L+  YS       ++  F  MR  G+  +  + +  +  C   A  + G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFA-LPVVLKCVPDA--RLGA 120

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF-DCLPVKDSASWNTLILGYGML 237
           ++H + +     + +FVAN+++  Y   G +D A ++F +    +++ SWN L+  Y   
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
            +   AI +F  M   G+      +  ++ AC+    +E G++    +            
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTA 240

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
             +VD+  + G ++ A  + + +P + D   W AL+  C + G+
Sbjct: 241 NALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNGH 283


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 152/408 (37%), Positives = 235/408 (57%), Gaps = 5/408 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP-IHNEFPNSVTLTNVLPACA 69
           A  +F  I  K + SWNA++   AQN     A++L REM     + P+  ++ ++L AC 
Sbjct: 326 ACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACG 385

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
               L  GK  H  I+R GL  D F+  +L  +Y +CG  +LA+ +F+ +  +DEVS+N 
Sbjct: 386 NLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNT 445

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKH--DVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           +I GYSQ     ESL LF EM+     H   +++   A+ AC+ L A++ GKE+H   ++
Sbjct: 446 MIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCFALK 505

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
             L    F+++SI+D Y++ G +D A   FD L  KD+ SW  +I GY + G    A+ L
Sbjct: 506 ADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGL 565

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLG 305
           ++ M  +G+  D  +Y+ +L AC H G++E G  +F EM+    ++    HYAC++ +L 
Sbjct: 566 YDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLS 625

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365
           RAG   DAV L++ +P EPDA I  ++L AC ++G VELG   A+ L  L+P    +Y+L
Sbjct: 626 RAGRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVELGKKVADKLLELEPHKAEHYVL 685

Query: 366 LSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            SNMYA + +WDE  KVR++++     K PGCSW+    +V  FV  +
Sbjct: 686 ASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWIDIAGKVYSFVAGE 733



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 214/465 (46%), Gaps = 61/465 (13%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +  R  +A  +F  +A +N+VSWNA++A  A  R  L+  +   E       P+  T
Sbjct: 108 MYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPRRGLELFRDCLEDLGGTAAPDEAT 167

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---- 116
           L  VLP CA   +   G+ +H   ++ G +    ++N L DMYAKCG +  A+  F    
Sbjct: 168 LVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAP 227

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL--LGMKHDVVSFMGAISACANLAAI 174
             + R+ VS+N+++ GY++  +   +  L  EM++   G+  D ++ +  +  C+ L  +
Sbjct: 228 PGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPEL 287

Query: 175 KQGKEIHGVTIRKHLH-THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
            + +E+H   +R+ LH T   V N+++  Y R G +  A ++FD +  K  +SWN LI  
Sbjct: 288 AKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGA 347

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDP--VSYIAILTAC-----------SHG-----GL- 274
           +   GE   AI LF  M  +  G  P   S  ++L AC           +HG     GL 
Sbjct: 348 HAQNGEASAAIELFREM-TNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLE 406

Query: 275 -------------VEKGKKYFDEMQADSVKPT-EMHYACMVDLLGRAGLMEDAVKLIKNL 320
                        ++ G++    +  D+V+   E+ +  M+    + GL  ++++L + +
Sbjct: 407 KDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREM 466

Query: 321 PVEPDANIWGALLG------ACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS---NMYA 371
             +   + W +LL       AC     V LG     H F LK   C    L S   +MY+
Sbjct: 467 QSKKGGH-WPSLLAATSALVACSELPAVRLG--KEMHCFALKADLCEDSFLSSSIIDMYS 523

Query: 372 EAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMK 416
           + G  D+A    + +K+++A      SW      +  + VN R K
Sbjct: 524 KCGSVDDARVFFDRLKAKDA-----VSWTVM---ITGYAVNGRGK 560



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 140/260 (53%), Gaps = 11/260 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH--NEFPNS 58
           +Y +  R + A  LF  + EK+ VSWN M+A ++QN L  ++LQL REM       +P+ 
Sbjct: 418 VYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSL 477

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           +  T+ L AC+    +R GKE+H   ++  L  D FL++++ DMY+KCG ++ A+  F+ 
Sbjct: 478 LAATSALVACSELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDR 537

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  +D VS+ ++I GY+      E++ L+ +M   GM+ D  +++G + AC +   ++ G
Sbjct: 538 LKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDG 597

Query: 178 ----KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLIL 232
               +E+  +     +   L     ++   +R+GR   A  + + +P + D+   ++++ 
Sbjct: 598 LCFFQEMRNLP---KIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILSSVLS 654

Query: 233 GYGMLGEVDTAINLFEAMRE 252
              M GEV+    + + + E
Sbjct: 655 ACHMHGEVELGKKVADKLLE 674



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 166/357 (46%), Gaps = 33/357 (9%)

Query: 22  NIVSWNAMVANFAQNRLELKALQLVREMPIHNE--FPNSVTLTNVLPACARGHFLRPGKE 79
           ++  WN ++A+ ++      AL ++  +   ++   P+  TL   L +C RG     G++
Sbjct: 29  SLPQWNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSC-RGD---DGRQ 84

Query: 80  IHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTS 137
           +HA   + GL + D F+ N+L  MY +CG ++ A+ VF  ++ R+ VS+N L+   +  +
Sbjct: 85  VHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALM---AAVA 141

Query: 138 DCSESLSLFSE-MRLLG--MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
           D    L LF + +  LG     D  + +  +  CA LA  + G+ +HG+ ++        
Sbjct: 142 DPRRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPR 201

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMR 251
           V+N ++D Y + G +  A   F   P    ++  SWN ++ GY   GE   A  L   M+
Sbjct: 202 VSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQ 261

Query: 252 --EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK-----PTEMHYACMVDLL 304
             E GV  D ++ +++L  CS  GL E  K    E+ A  V+       +M    ++   
Sbjct: 262 MEERGVPADEITMLSVLPVCS--GLPELAK--LRELHAFVVRRGLHLTGDMVPNALIAAY 317

Query: 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361
           GR G +  A ++   +      + W AL+GA    G     A AA  LF      CG
Sbjct: 318 GRCGCLLHACRVFDGI-CSKMVSSWNALIGAHAQNGE----ASAAIELFREMTNACG 369


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 153/414 (36%), Positives = 241/414 (58%), Gaps = 4/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A   F  I   +++  + M++ +AQ+    +A +L   +   +  PN  +
Sbjct: 307 MYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYS 366

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L++VL AC     L  GK+IH   I+ G   DLF+ NAL D YAKC  ++ +  +F+ S 
Sbjct: 367 LSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFS-SL 425

Query: 121 RD--EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           RD  EVS+N ++VG+SQ+    E+LS+F EM+   M    V++   + ACA+ A+I+   
Sbjct: 426 RDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAG 485

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH    +   +    + NS++D Y + G I  A K+F  L  +D  SWN +I GY + G
Sbjct: 486 QIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHG 545

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
           +   A+ LF+ M +  V  + ++++A+L+ CS  GLV  G   FD M+ D  +KP+  HY
Sbjct: 546 QAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHY 605

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C+V LLGRAG + DA++ I ++P  P A +W ALL +C I+ NV LG ++AE +  ++P
Sbjct: 606 TCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEP 665

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           Q    Y+LLSNMYA AG  D+ + +R+ M++   +K PG SWV+ + E+  F V
Sbjct: 666 QDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSV 719



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 147/329 (44%), Gaps = 6/329 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    A A  LF  + E+N+VS+  +V   AQ      A  L R +       N   
Sbjct: 105 MYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFV 164

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           LT +L              +H+   + G + + F+ + L D Y+ C  ++ A++VFN I 
Sbjct: 165 LTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIV 224

Query: 120 FRDEVSYNILIVGYSQTSDCSE-SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            +D V +  ++  YS+ +DC E +  +FS+MR+ G K +  +    + A   L ++  GK
Sbjct: 225 RKDAVVWTAMVSCYSE-NDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGK 283

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IHG  I+    T   V  ++LD Y + G I  A   F+ +P  D    + +I  Y    
Sbjct: 284 GIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSN 343

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
           + + A  LF  +    V  +  S  ++L AC++   ++ GK+  +       +       
Sbjct: 344 QNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGN 403

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
            ++D   +   M+ ++K+  +L    DAN
Sbjct: 404 ALMDFYAKCNDMDSSLKIFSSL---RDAN 429



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 135/293 (46%), Gaps = 17/293 (5%)

Query: 39  ELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL--NFDLFLT 96
           EL +L ++  +P  + F  +  L   +   ARG   R G+ +H  ++R+G     DLF  
Sbjct: 44  ELTSLAILPSVPGVDSFACARQLQGCI---ARGD-ARGGRAVHGHVVRRGGVGRLDLFCA 99

Query: 97  NALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-- 153
           N L +MY K G L  A+ +F+ +  R+ VS+  L+  ++Q  D   + +LF  +R  G  
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHE 159

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
           +   V++ M  ++   + A +  G  +H    +     + FV + ++D Y+    +  A 
Sbjct: 160 VNQFVLTTMLKLAIAMDAAGLAGG--VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAE 217

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA--CSH 271
            +F+ +  KD+  W  ++  Y      + A  +F  MR  G   +P +  ++L A  C  
Sbjct: 218 HVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLP 277

Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHY-ACMVDLLGRAGLMEDAVKLIKNLPVE 323
             ++ KG          ++  TE H    ++D+  + G ++DA    + +P +
Sbjct: 278 SVVLGKG---IHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYD 327


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 149/421 (35%), Positives = 242/421 (57%), Gaps = 2/421 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+    +A  +F  +  ++++  NA+++  +      +AL L  E+       N  T
Sbjct: 347 MYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTT 406

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL + A        +++HA  ++ G  FD  + N L D Y KC CL+ A  VF   S
Sbjct: 407 LAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECS 466

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D ++   +I   SQ      ++ LF EM   G++ D       ++ACA+L+A +QGK+
Sbjct: 467 SGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I++   +  F  N+++  Y + G I+ A   F  LP +   SW+ +I G    G 
Sbjct: 527 VHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGH 586

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+ LF  M ++G+  + ++  ++L AC+H GLV++ K+YF+ M +   +  TE HY+
Sbjct: 587 GKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYS 646

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLGRAG ++DA++L+ ++P + +A+IWGALLGA R++ + ELG  AAE LF+L+P+
Sbjct: 647 CMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPE 706

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
             G ++LL+N YA AG W+E +KVR+LMK    KK P  SW++ +D+V  F+V D+    
Sbjct: 707 KSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPM 766

Query: 419 T 419
           T
Sbjct: 767 T 767



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 166/341 (48%), Gaps = 14/341 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH----NEFPN 57
           Y+K  RP  A  +F  I +   VSW+++V  ++ N L   A+Q    M       NEF  
Sbjct: 47  YSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFAL 106

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
            V L  V  A       R G ++HA  +  G   D+F+ NAL  MY   G ++ A+ VFN
Sbjct: 107 PVVLKCVPDA-------RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 118 --ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
              S R+ VS+N L+  Y +   C +++ +F EM   G++     F   ++AC     I+
Sbjct: 160 EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIE 219

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G+++H + +R      +F AN+++D Y + GR+D+A+ IF+ +P  D  SWN LI G  
Sbjct: 220 AGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCV 279

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
           + G    AI L   M+  G+  +  +  +IL ACS  G  + G++    M   +    + 
Sbjct: 280 LNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDY 339

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
               +VD+  +   ++DA K+   +    D  +  AL+  C
Sbjct: 340 IGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCNALISGC 379



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 162/342 (47%), Gaps = 2/342 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  R   AS +F  + + ++VSWNA+++    N  + +A++L+ +M      PN  T
Sbjct: 246 MYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFT 305

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L+++L AC+       G++IH  +I+   + D ++   L DMYAK   L+ A+ VF+  F
Sbjct: 306 LSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMF 365

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +  N LI G S      E+LSLF E+R  G+  +  +    + + A+L A    ++
Sbjct: 366 HRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQ 425

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + ++        V N ++D Y +   +  AN++F+     D  +  ++I        
Sbjct: 426 VHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDH 485

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + AI LF  M   G+  DP    ++L AC+     E+GK+    +              
Sbjct: 486 GEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNA 545

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           +V    + G +EDA     +LP E     W A++G    +G+
Sbjct: 546 LVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGH 586



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 169/376 (44%), Gaps = 47/376 (12%)

Query: 19  AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78
           +E+N VSWN +++ + +N     A+Q+  EM      P     + V+ AC     +  G+
Sbjct: 163 SERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGR 222

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTS 137
           ++HA ++R G + D+F  NAL DMY K G +++A  +F  +   D VS+N LI G     
Sbjct: 223 QVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 282

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
               ++ L  +M+  G+  +V +    + AC+   A   G++IHG  I+ +  +  ++  
Sbjct: 283 HDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGV 342

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
            ++D Y ++  +D A K+FD +  +D    N LI G    G  D A++LF  +R++G+G 
Sbjct: 343 GLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGV 402

Query: 258 DPVSYIAILTACSH--------------------------GGLVEK---------GKKYF 282
           +  +  A+L + +                            GL++            + F
Sbjct: 403 NRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVF 462

Query: 283 DEMQADSVKPTEMHYAC--MVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACR 337
           +E  +  +       AC  M+  L +    E A+KL   +    +EPD  +  +LL AC 
Sbjct: 463 EECSSGDI------IACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACA 516

Query: 338 IYGNVELGAWAAEHLF 353
                E G     HL 
Sbjct: 517 SLSAYEQGKQVHAHLI 532



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 127/284 (44%), Gaps = 8/284 (2%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T++  L   A    L PG  +HA +++ G +   F  N L   Y+KC     A+ VF+ I
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHASLLKSG-SLASF-RNHLISFYSKCRRPCCARRVFDEI 63

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
                VS++ L+  YS       ++  F  MR  G+  +  + +  +  C   A  + G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFA-LPVVLKCVPDA--RLGA 120

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF-DCLPVKDSASWNTLILGYGML 237
           ++H + +     + +FVAN+++  Y   G +D A ++F +    +++ SWN L+  Y   
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
            +   AI +F  M   G+      +  ++ AC+    +E G++    +            
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTA 240

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
             +VD+  + G ++ A  + + +P + D   W AL+  C + G+
Sbjct: 241 NALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNGH 283


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 239/415 (57%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ K     +A  LF  + E+N+VSWN +++        ++A +L   M        S T
Sbjct: 19  MHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLNMWEEFSDAGSFT 78

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              ++ A A    +  G+++HA  ++ G+  D+F++ AL DMY+KCG +  A+ VF  + 
Sbjct: 79  FAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEMP 138

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  V +N +I GY+      E+L ++ EMR  G+K D  +F   +  CA LA+++  K+
Sbjct: 139 EKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLASVEHAKQ 198

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   IR    + +    +++DFY++ GRI+ A  +FD +  K+  SWN LI GYG  G 
Sbjct: 199 AHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYGNHGR 258

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYA 298
              A+ LFE M ++ +  + ++++A+L+ACSH GL E+G + F  M  D+ +KP  MHYA
Sbjct: 259 GSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEIFQSMGRDNRIKPRAMHYA 318

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM++L+GR GL+++A+ LI+  P +P AN+W ALL ACR+  N ELG +AAE L+ ++P 
Sbjct: 319 CMIELMGREGLLDEALALIRGAPFKPTANMWAALLTACRVNENFELGKFAAEKLYGMEPD 378

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               YI+L N+Y  AG   EA+ V   +K +  +  P CSW++ +     F+  D
Sbjct: 379 KLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSWIEVKRRPHVFLSGD 433



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 140/291 (48%), Gaps = 12/291 (4%)

Query: 84  IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSES 142
           +I  G  FD ++ N +  M+ KCG +  A+ +F+ +  R+ VS+N +I G     D  E+
Sbjct: 1   MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEA 60

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
             LF  M          +F   I A A L  I  G+++H  T++  +   +FV+ +++D 
Sbjct: 61  FRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDM 120

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y++ G I+ A  +F+ +P K +  WNT+I GY + G  + A++++  MR+ GV  D  ++
Sbjct: 121 YSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTF 180

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
             I+  C+    VE  K+    +         +    +VD   + G +EDA  +   +  
Sbjct: 181 SMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKM-A 239

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLF------MLKPQHCGYYILLS 367
             +   W AL+G    YGN   G+ A E LF       + P H  +  +LS
Sbjct: 240 SKNVISWNALIGG---YGNHGRGSEAVE-LFEQMIQERMNPNHITFLAVLS 286


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 143/407 (35%), Positives = 235/407 (57%), Gaps = 2/407 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F  I+  ++ +WN +++ + Q       ++L R M   N  P+  TL  +L +C++
Sbjct: 93  ARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSK 152

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              L  G+++H+  +R  L+ D+F+ + L DMY+KCG + +A+++FN ++ RD V +N +
Sbjct: 153 LGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSI 212

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I G +  S   E+   F +MR  G+     S+   I++C+ L++I  G++IH   ++   
Sbjct: 213 ISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGY 272

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             +++V ++++D Y + G +D A   FD + +K+  +WN +I GY   G  D A+ LFE 
Sbjct: 273 DQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEY 332

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAG 308
           M       D V++IA+LT CSH GLV+K   +F+ M+    + P   HY C++D LGRAG
Sbjct: 333 MLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAG 392

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
              +   LI  +P + D  IW  LL AC ++ N ELG  AAEHLF + P++   Y+LLSN
Sbjct: 393 RFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSN 452

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           +YA  G+  +AS VR LM +R   K  G SW+  +D V+ F+V D +
Sbjct: 453 IYASLGRHGDASAVRALMSNRGVVKGRGYSWIDQKDGVRAFMVADDL 499



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 144/313 (46%), Gaps = 34/313 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F ++    IVSWN ++  F Q     KA++++  M      PN VT
Sbjct: 17  MYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT 76

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            +N+L +C +   +   + +  +I R  +                               
Sbjct: 77  YSNLLASCIKARDVHSARAMFDKISRPSV------------------------------- 105

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
               ++N L+ GY Q     +++ LF  M+   ++ D  +    +S+C+ L  +  G+++
Sbjct: 106 ---TTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQV 162

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H  ++R  LH  +FVA+ ++D Y++ G+I +A  IF+ +  +D   WN++I G  +    
Sbjct: 163 HSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLN 222

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A + F+ MRE+G+     SY +++ +CS    +  G++   ++  D         + +
Sbjct: 223 KEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSAL 282

Query: 301 VDLLGRAGLMEDA 313
           +D+  + G M+DA
Sbjct: 283 IDMYAKCGNMDDA 295



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 124/240 (51%), Gaps = 15/240 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  +   A  +F+ + E+++V WN++++    + L  +A    ++M  +   P   +
Sbjct: 184 MYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESS 243

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +++ +C+R   +  G++IHA++++ G + ++++ +AL DMYAKCG ++ A+  F+ + 
Sbjct: 244 YASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMM 303

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN-------LA 172
            ++ V++N +I GY+Q     +++ LF  M     K D V+F+  ++ C++       +A
Sbjct: 304 MKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMA 363

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA-SWNTLI 231
                +  +G+      +T L      +D   R+GR      +   +P KD    W  L+
Sbjct: 364 FFNSMENSYGIIPLAEHYTCL------IDALGRAGRFVEVEALIHKMPCKDDPIIWEVLL 417



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 14/212 (6%)

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
           RK   +   V NS++D YT+   +D A K+F+ LP     SWN LI G+G  G    A+ 
Sbjct: 1   RKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVE 60

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           +   M+E G   + V+Y  +L +C     V   +  FD++     +P+   +  ++    
Sbjct: 61  VLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKIS----RPSVTTWNTLLSGYC 116

Query: 306 RAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELG--AWAAEHLFMLKPQHC 360
           +    +D ++L + +    V+PD      +L +C   G ++ G    +A   F+L   H 
Sbjct: 117 QEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLL---HN 173

Query: 361 GYYIL--LSNMYAEAGKWDEASKVRELMKSRE 390
             ++   L +MY++ G+   A  +   M  R+
Sbjct: 174 DMFVASGLVDMYSKCGQIGIARSIFNKMTERD 205



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 116/259 (44%), Gaps = 45/259 (17%)

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLS 144
           RKG   D  + N+L DMY KC  ++ A  VF ++     VS+NILI G+ Q   C++++ 
Sbjct: 1   RKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVE 60

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
           + S M+  G + + V++   +++C       + +++H                       
Sbjct: 61  VLSLMQEAGFEPNEVTYSNLLASCI------KARDVHS---------------------- 92

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
                  A  +FD +      +WNTL+ GY    +    I LF  M+   V  D  +   
Sbjct: 93  -------ARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAV 145

Query: 265 ILTACSHGGLVEKGKKYFDEMQADSVK---PTEMHYAC-MVDLLGRAGLMEDAVKLIKNL 320
           IL++CS  G+++ G+    ++ + SV+     +M  A  +VD+  + G +  A + I N 
Sbjct: 146 ILSSCSKLGILDFGR----QVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIA-RSIFNK 200

Query: 321 PVEPDANIWGALLGACRIY 339
             E D   W +++    I+
Sbjct: 201 MTERDVVCWNSIISGLTIH 219


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 143/407 (35%), Positives = 235/407 (57%), Gaps = 2/407 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F  I+  ++ +WN +++ + Q       ++L R M   N  P+  TL  +L +C++
Sbjct: 370 ARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSK 429

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              L  G+++H+  +R  L+ D+F+ + L DMY+KCG + +A+++FN ++ RD V +N +
Sbjct: 430 LGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSI 489

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I G +  S   E+   F +MR  G+     S+   I++C+ L++I  G++IH   ++   
Sbjct: 490 ISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGY 549

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             +++V ++++D Y + G +D A   FD + +K+  +WN +I GY   G  D A+ LFE 
Sbjct: 550 DQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEY 609

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAG 308
           M       D V++IA+LT CSH GLV+K   +F+ M+    + P   HY C++D LGRAG
Sbjct: 610 MLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAG 669

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
              +   LI  +P + D  IW  LL AC ++ N ELG  AAEHLF + P++   Y+LLSN
Sbjct: 670 RFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSN 729

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           +YA  G+  +AS VR LM +R   K  G SW+  +D V+ F+V D +
Sbjct: 730 IYASLGRHGDASAVRALMSNRGVVKGRGYSWIDQKDGVRAFMVADDL 776



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 188/394 (47%), Gaps = 24/394 (6%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLEL-KALQLVREMPIHNEFPNSVTLTNVLPACARGH 72
           L   +  +N VSWN +++  A++  +  +A+++   M      P   TL +VL AC    
Sbjct: 96  LLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLA 155

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIV 131
            L  G+  H   ++ GL+ + F+ NAL  MY KCG +  A  +F  ++  +EVS+  ++ 
Sbjct: 156 ALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMG 215

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA--------IKQGKEIHGV 183
           G +QT    ++L LF+ M   G+  D VS    + ACA   A         + G+ IH +
Sbjct: 216 GLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHAL 275

Query: 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
            +RK   +   V NS++D YT+   +D A K+F+ LP     SWN LI G+G  G    A
Sbjct: 276 VVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKA 335

Query: 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303
           + +   M+E G   + V+Y  +L +C     V   +  FD++     +P+   +  ++  
Sbjct: 336 VEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKIS----RPSVTTWNTLLSG 391

Query: 304 LGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELG--AWAAEHLFMLKPQ 358
             +    +D ++L + +    V+PD      +L +C   G ++ G    +A   F+L   
Sbjct: 392 YCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLL--- 448

Query: 359 HCGYYIL--LSNMYAEAGKWDEASKVRELMKSRE 390
           H   ++   L +MY++ G+   A  +   M  R+
Sbjct: 449 HNDMFVASGLVDMYSKCGQIGIARSIFNKMTERD 482



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 160/352 (45%), Gaps = 53/352 (15%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  LF+ +A  N VS+ AM+   AQ      AL+L   M       + V+
Sbjct: 185 MYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVS 244

Query: 61  LTNVLPACAR--------GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
           +++VL ACA+            R G+ IHA ++RKG   D  + N+L DMY KC  ++ A
Sbjct: 245 VSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEA 304

Query: 113 QNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
             VF ++     VS+NILI G+ Q   C++++ + S M+  G + + V++   +++C   
Sbjct: 305 VKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCI-- 362

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
               + +++H                              A  +FD +      +WNTL+
Sbjct: 363 ----KARDVHS-----------------------------ARAMFDKISRPSVTTWNTLL 389

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
            GY    +    I LF  M+   V  D  +   IL++CS  G+++ G+    ++ + SV+
Sbjct: 390 SGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGR----QVHSASVR 445

Query: 292 ---PTEMHYAC-MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
                +M  A  +VD+  + G +  A + I N   E D   W +++    I+
Sbjct: 446 FLLHNDMFVASGLVDMYSKCGQIGIA-RSIFNKMTERDVVCWNSIISGLTIH 496



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 124/240 (51%), Gaps = 15/240 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  +   A  +F+ + E+++V WN++++    + L  +A    ++M  +   P   +
Sbjct: 461 MYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESS 520

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +++ +C+R   +  G++IHA++++ G + ++++ +AL DMYAKCG ++ A+  F+ + 
Sbjct: 521 YASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMM 580

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN-------LA 172
            ++ V++N +I GY+Q     +++ LF  M     K D V+F+  ++ C++       +A
Sbjct: 581 MKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMA 640

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA-SWNTLI 231
                +  +G+      +T L      +D   R+GR      +   +P KD    W  L+
Sbjct: 641 FFNSMENSYGIIPLAEHYTCL------IDALGRAGRFVEVEALIHKMPCKDDPIIWEVLL 694



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 129/260 (49%), Gaps = 11/260 (4%)

Query: 73  FLRPGKEIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILI 130
           + R G   HA +  + L + + +  NA      + G L+ A+++   +  R+ VS+N +I
Sbjct: 53  YSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVI 112

Query: 131 VGYSQT-SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
              +++  D  E++ ++  MR  G+     +    +SAC  LAA+  G+  HGV ++  L
Sbjct: 113 SALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGL 172

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             + FV N++L  YT+ G +  A ++F  +   +  S+  ++ G    G +D A+ LF  
Sbjct: 173 DANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFAR 232

Query: 250 MREDGVGYDPVSYIAILTACSHGGL----VEKGKKYFDEMQADSVKP---TEMHYA-CMV 301
           M   GV  DPVS  ++L AC+        V +  +    + A  V+    ++ H    ++
Sbjct: 233 MCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLI 292

Query: 302 DLLGRAGLMEDAVKLIKNLP 321
           D+  +   M++AVK+ ++LP
Sbjct: 293 DMYTKCVEMDEAVKVFESLP 312



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 111/276 (40%), Gaps = 87/276 (31%)

Query: 194 FVANSILDFYT-------------------------------RSGRIDLANKIFDCLPVK 222
           F+AN +++ Y+                               R+G +D A  +   +P +
Sbjct: 44  FLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMPRR 103

Query: 223 DSASWNTLILGYGML-GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG--- 278
           ++ SWNT+I       G+   A+ ++  MR +G+     +  ++L+AC  GGL   G   
Sbjct: 104 NAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSAC--GGLAALGDGR 161

Query: 279 -------KKYFDEMQ----------------ADSV-------KPTEMHYACMVDLLGRAG 308
                  K   D  Q                 D+V       +P E+ +  M+  L + G
Sbjct: 162 RCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTG 221

Query: 309 LMEDAVKLIKNL-----PVEP--DANIWGALLGACRIYGNV----ELGAWAAEHLFMLKP 357
            ++DA++L   +     PV+P   +++ GA   AC    +V     LG   A H  +++ 
Sbjct: 222 SIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLG--QAIHALVVRK 279

Query: 358 -----QHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
                QH G  ++  +MY +  + DEA KV E + S
Sbjct: 280 GFGSDQHVGNSLI--DMYTKCVEMDEAVKVFESLPS 313


>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
          Length = 518

 Score =  284 bits (726), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 143/407 (35%), Positives = 235/407 (57%), Gaps = 2/407 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F  I+  ++ +WN +++ + Q       ++L R M   N  P+  TL  +L +C++
Sbjct: 77  ARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSK 136

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              L  G+++H+  +R  L+ D+F+ + L DMY+KCG + +A+++FN ++ RD V +N +
Sbjct: 137 LGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSI 196

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I G +  S   E+   F +MR  G+     S+   I++C+ L++I  G++IH   ++   
Sbjct: 197 ISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGY 256

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             +++V ++++D Y + G +D A   FD + +K+  +WN +I GY   G  D A+ LFE 
Sbjct: 257 DQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEY 316

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAG 308
           M       D V++IA+LT CSH GLV+K   +F+ M+    + P   HY C++D LGRAG
Sbjct: 317 MLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAG 376

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
              +   LI  +P + D  IW  LL AC ++ N ELG  AAEHLF + P++   Y+LLSN
Sbjct: 377 RFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSN 436

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           +YA  G+  +AS VR LM +R   K  G SW+  +D V+ F+V D +
Sbjct: 437 IYASLGRHGDASAVRALMSNRGVVKGRGYSWIDQKDGVRAFMVADDL 483



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 144/313 (46%), Gaps = 34/313 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F ++    IVSWN ++  F Q     KA++++  M      PN VT
Sbjct: 1   MYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT 60

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            +N+L +C +   +   + +  +I R  +                               
Sbjct: 61  YSNLLASCIKARDVHSARAMFDKISRPSVT------------------------------ 90

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
               ++N L+ GY Q     +++ LF  M+   ++ D  +    +S+C+ L  +  G+++
Sbjct: 91  ----TWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQV 146

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H  ++R  LH  +FVA+ ++D Y++ G+I +A  IF+ +  +D   WN++I G  +    
Sbjct: 147 HSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLN 206

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A + F+ MRE+G+     SY +++ +CS    +  G++   ++  D         + +
Sbjct: 207 KEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSAL 266

Query: 301 VDLLGRAGLMEDA 313
           +D+  + G M+DA
Sbjct: 267 IDMYAKCGNMDDA 279



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 124/240 (51%), Gaps = 15/240 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  +   A  +F+ + E+++V WN++++    + L  +A    ++M  +   P   +
Sbjct: 168 MYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESS 227

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +++ +C+R   +  G++IHA++++ G + ++++ +AL DMYAKCG ++ A+  F+ + 
Sbjct: 228 YASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMM 287

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN-------LA 172
            ++ V++N +I GY+Q     +++ LF  M     K D V+F+  ++ C++       +A
Sbjct: 288 MKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMA 347

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA-SWNTLI 231
                +  +G+      +T L      +D   R+GR      +   +P KD    W  L+
Sbjct: 348 FFNSMENSYGIIPLAEHYTCL------IDALGRAGRFVEVEALIHKMPCKDDPIIWEVLL 401



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 14/195 (7%)

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           YT+   +D A K+F+ LP     SWN LI G+G  G    A+ +   M+E G   + V+Y
Sbjct: 2   YTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTY 61

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP- 321
             +L +C     V   +  FD++     +P+   +  ++    +    +D ++L + +  
Sbjct: 62  SNLLASCIKARDVHSARAMFDKIS----RPSVTTWNTLLSGYCQEEQHQDTIELFRRMQH 117

Query: 322 --VEPDANIWGALLGACRIYGNVELG--AWAAEHLFMLKPQHCGYYIL--LSNMYAEAGK 375
             V+PD      +L +C   G ++ G    +A   F+L   H   ++   L +MY++ G+
Sbjct: 118 QNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLL---HNDMFVASGLVDMYSKCGQ 174

Query: 376 WDEASKVRELMKSRE 390
              A  +   M  R+
Sbjct: 175 IGIARSIFNKMTERD 189



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 107/243 (44%), Gaps = 45/243 (18%)

Query: 102 MYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS 160
           MY KC  ++ A  VF ++     VS+NILI G+ Q   C++++ + S M+  G + + V+
Sbjct: 1   MYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT 60

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           +   +++C       + +++H                              A  +FD + 
Sbjct: 61  YSNLLASCI------KARDVHS-----------------------------ARAMFDKIS 85

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
                +WNTL+ GY    +    I LF  M+   V  D  +   IL++CS  G+++ G+ 
Sbjct: 86  RPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGR- 144

Query: 281 YFDEMQADSVK---PTEMHYAC-MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
              ++ + SV+     +M  A  +VD+  + G +  A + I N   E D   W +++   
Sbjct: 145 ---QVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIA-RSIFNKMTERDVVCWNSIISGL 200

Query: 337 RIY 339
            I+
Sbjct: 201 TIH 203


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  284 bits (726), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 148/419 (35%), Positives = 236/419 (56%), Gaps = 10/419 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-----F 55
           +Y+K  R  +A  +F     +N+V+WNAM++ +A       +L + REM    +      
Sbjct: 150 LYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQ 209

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCL-NLA 112
           P+  T  ++L AC      R G ++HA ++ +G++   +  L  AL DMY KC CL  +A
Sbjct: 210 PDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMA 269

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
             VFN +  ++ + +  +IVG++Q     E++ LF      G++ D       +   A+ 
Sbjct: 270 MQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGVFADF 329

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
           A ++QG+++H  T++      + VANS++D Y + G  D A + F  +P ++  SW  +I
Sbjct: 330 ALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPARNVVSWTAMI 389

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SV 290
            G G  G    AI++FE MR +GV  D V+Y+A+L+ACSH GLVE+ ++YF  ++ D  +
Sbjct: 390 NGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYFSAIRHDRRL 449

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
           +P   HYACMVDLLGRAG + +A  L+  +P+ P   +W  LL ACR++ NV +G  A E
Sbjct: 450 RPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLSACRVHKNVTVGREAGE 509

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
            L  +   +   Y++LSN++AEAG W E  +VR  M+ R  +K  GCSWV+   E   F
Sbjct: 510 TLLAIDGDNPVNYVMLSNIFAEAGDWRECQRVRGAMRRRGLRKQGGCSWVEVGKEAHFF 568



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 203/435 (46%), Gaps = 52/435 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           MYAK      A  +F  + E+N+VSW A++  F ++    + L+L+  M  + +  PN  
Sbjct: 48  MYAKCGELRMAGEVFGGMPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEF 107

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           TL+  L AC     +  G  IH   +R G      + N+L  +Y+K G +  A+ VF+ +
Sbjct: 108 TLSASLKACGVVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGT 167

Query: 120 -FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-----DVVSFMGAISACANLAA 173
            FR+ V++N +I GY+      +SL +F EM+    +      D  +F   + AC +L A
Sbjct: 168 VFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGA 227

Query: 174 IKQGKEIHGVTIRKHLHT--HLFVANSILDFYTRSG-RIDLANKIFDCLPVKDSASWNTL 230
            ++G ++H   + + + T  +  +A ++LD Y +    + +A ++F+ L  K++  W T+
Sbjct: 228 AREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTV 287

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY--------- 281
           I+G+   G+V  A+ LF      GV  D     +++   +   LVE+G++          
Sbjct: 288 IVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPA 347

Query: 282 -FDEMQADSVKPTEMHYAC-----------------------MVDLLGRAGLMEDAVKLI 317
             D   A+S+   +M++ C                       M++ LG+ G  ++A+ + 
Sbjct: 348 GLDVSVANSL--IDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMF 405

Query: 318 KNL---PVEPDANIWGALLGACRIYGNVELGAW---AAEHLFMLKPQHCGYYILLSNMYA 371
           + +    VEPD   + ALL AC   G VE       A  H   L+P+   +Y  + ++  
Sbjct: 406 EEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYFSAIRHDRRLRPR-AEHYACMVDLLG 464

Query: 372 EAGKWDEASKVRELM 386
            AG+  EA  +   M
Sbjct: 465 RAGELSEAKDLVATM 479



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 7/232 (3%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + ++L A A    +  G ++H  +++ G   D  L N L DMYAKCG L +A  VF  + 
Sbjct: 7   IADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMP 66

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGK 178
            R+ VS+  L+VG+ +  D  E L L   MR L  +  +  +   ++ AC  +  +  G 
Sbjct: 67  ERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGV 126

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IHG  +R     H  VANS++  Y++ GRI  A ++FD    ++  +WN +I GY   G
Sbjct: 127 WIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAG 186

Query: 239 EVDTAINLFEAMR-----EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
               ++ +F  M+     E+    D  ++ ++L AC   G   +G +    M
Sbjct: 187 HGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAM 238


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  284 bits (726), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 157/449 (34%), Positives = 252/449 (56%), Gaps = 37/449 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++     A  +F  + E    +WNAM++ +       +AL L R+M       + +T 
Sbjct: 233 YVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITY 292

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLN----FDLFLTNALTDMYAKCGCLNLAQNVF- 116
           T ++ ACA     + GK++HA I++  LN    F L ++NAL  +Y K   ++ A+ +F 
Sbjct: 293 TTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFY 352

Query: 117 -----NI--------------------SFRDE------VSYNILIVGYSQTSDCSESLSL 145
                NI                    SF +E      ++  ++I G +Q     E L L
Sbjct: 353 AMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKL 412

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           F +MRL G +    +F GA++AC+ L A++ G+++H   +     + L V N+++  Y +
Sbjct: 413 FKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAK 472

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
            G ++ A  +F  +P  D  SWN++I   G  G    AI LF+ M ++GV  D ++++ +
Sbjct: 473 CGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTV 532

Query: 266 LTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           LTACSH GLVEKG+ YF+ M ++  + P E HYA MVDL  RAG+   A  +I ++P +P
Sbjct: 533 LTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKP 592

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
            A +W ALL  CRI+GN++LG  AAE LF L PQ+ G Y+LLSN+YA+ G+W++ +KVR+
Sbjct: 593 GAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRK 652

Query: 385 LMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           LM+ +  +K P CSW++  ++V  F+V+D
Sbjct: 653 LMRDQAVRKEPACSWIEVENKVHVFMVDD 681



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 141/307 (45%), Gaps = 50/307 (16%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNA-------------------------------M 29
           +Y K+++  EA  +F+ +  +NI++WNA                               M
Sbjct: 337 LYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVM 396

Query: 30  VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
           ++  AQN    + L+L ++M +    P        L AC+    L  G+++HA+++  G 
Sbjct: 397 ISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGY 456

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
              L + NA+  MYAKCG +  A++VF  +   D VS+N +I    Q     +++ LF +
Sbjct: 457 ESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQ 516

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGK-------EIHGVTIRKHLHTHLFVANSILD 201
           M   G+  D ++F+  ++AC++   +++G+       E +G+T  +  +  +      +D
Sbjct: 517 MLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARM------VD 570

Query: 202 FYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGMLGEVDTAI----NLFEAMREDGVG 256
            + R+G    A  + D +P K  A  W  L+ G  + G +D  I     LF+ M ++   
Sbjct: 571 LFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGT 630

Query: 257 YDPVSYI 263
           Y  +S I
Sbjct: 631 YVLLSNI 637



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 136/333 (40%), Gaps = 62/333 (18%)

Query: 70  RGHFL--------RPGKEIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
           RGHFL        +    ++AR + + + N D      L   Y   G L L + +FN   
Sbjct: 47  RGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTP 106

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA-IKQ 176
           +  RD V YN +I GY+   D   +L LF  MR    + D  +F   +SA        +Q
Sbjct: 107 LYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQ 166

Query: 177 GKEIHGVTIRKHLH-THLFVANSILDFYT-RSGRIDL-------ANKIFDCLPVKDS--- 224
             ++H   ++  +      V N++L  Y  R+  + +       A K+FD +P +D    
Sbjct: 167 CGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTW 226

Query: 225 ----------------------------ASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
                                       A+WN +I GY   G    A+ L   MR  G+ 
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC------MVDLLGRAGLM 310
           +D ++Y  I++AC++ G  + GK+    +  + + P   H  C      ++ L  +   +
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQMHAYILKNELNPN--HSFCLSVSNALITLYCKNNKV 344

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           ++A K+   +PV  +   W A+L      G +E
Sbjct: 345 DEARKIFYAMPVR-NIITWNAILSGYVNAGRME 376


>gi|357129835|ref|XP_003566566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Brachypodium distachyon]
          Length = 614

 Score =  284 bits (726), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 145/416 (34%), Positives = 245/416 (58%), Gaps = 9/416 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +   P  A   FH +AE+N+++W AM++  A+  L   ++ L ++M    +  NS T 
Sbjct: 168 YFECESPGSAERAFHGMAERNVITWTAMISGMAREELYKDSIVLFQQMRRTVD-ANSATY 226

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR 121
           ++ L ACA    L+ G++IH  +++ GL  DL + + L D+Y+KCG +    +VF +  +
Sbjct: 227 SSSLLACAGSLALKEGQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQ 286

Query: 122 -DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD---VVSFMGAISACANLAAIKQG 177
            DE+S  +++VG++Q     ++  LF+EM   G+  D   V + +GA  A A  A    G
Sbjct: 287 PDEISLTVILVGFAQNGLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFAL---G 343

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K+IH + I+K    +++V N +++ Y++ G ++ + ++F+  P K+S SWN++I  +   
Sbjct: 344 KQIHALVIKKCFGRNIYVCNGLINMYSKCGELEESIQVFNETPSKNSISWNSIIAAFARH 403

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G+      LFE+M+ DG     V+++++L  CSH G  +KG +  + M ++  + P   H
Sbjct: 404 GQGSEVFKLFESMKADGANPTDVTFLSLLHGCSHVGSAKKGLEILNSMSSEYGILPRVEH 463

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YAC+VD+LGRAGL+EDA   I++ P +  A +W AL+GAC   GN E+G +AAE L  L 
Sbjct: 464 YACVVDMLGRAGLLEDARSFIEDGPFKDSALLWQALMGACSFRGNSEIGKYAAEKLLHLD 523

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVN 412
           P     Y+LLSN+Y+  G+WD+ ++V + M+    +K+ G SW++   EV  FVV 
Sbjct: 524 PDSPAAYVLLSNIYSSEGRWDDRARVMKSMREMGLRKDTGKSWIELEKEVHSFVVG 579



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 167/348 (47%), Gaps = 13/348 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP--NS 58
           MYA+  R AEA+ +F  +  ++ VSWN+++ +        +  +++R           + 
Sbjct: 64  MYARCGRHAEAARVFDEMRIRDSVSWNSLIGSSGAEDALSQFRRMLRSSSSPGGGVSCDH 123

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T T VL ACAR   L     +H  ++ +G   ++ + NAL   Y +C     A+  F+ 
Sbjct: 124 ATFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESPGSAERAFHG 183

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           ++ R+ +++  +I G ++     +S+ LF +MR   +  +  ++  ++ ACA   A+K+G
Sbjct: 184 MAERNVITWTAMISGMAREELYKDSIVLFQQMRRT-VDANSATYSSSLLACAGSLALKEG 242

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           ++IHG+ ++  L T L V + ++D Y++ G ++    +F      D  S   +++G+   
Sbjct: 243 QQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEISLTVILVGFAQN 302

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT--EM 295
           G  + A  LF  M  +G+  D     A+L A         GK    ++ A  +K      
Sbjct: 303 GLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFALGK----QIHALVIKKCFGRN 358

Query: 296 HYAC--MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
            Y C  ++++  + G +E+++++    P +   + W +++ A   +G 
Sbjct: 359 IYVCNGLINMYSKCGELEESIQVFNETPSKNSIS-WNSIIAAFARHGQ 405



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 126/284 (44%), Gaps = 26/284 (9%)

Query: 61  LTNVLPACARGHFLRPGKEIHARII-----------RKGLNFDLFLTNALTDMYAKCGCL 109
           L+ +L  C R    R G  +H  I+           R  L   L   NAL  MYA+CG  
Sbjct: 12  LSGLLSRCGRAADHRLGAALHVTIVKNPSHFLLCPLRPSLRHVLVAWNALVSMYARCGRH 71

Query: 110 NLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM------RLLGMKHDVVSFM 162
             A  VF+ +  RD VS+N LI     +S   ++LS F  M         G+  D  +F 
Sbjct: 72  AEAARVFDEMRIRDSVSWNSLI----GSSGAEDALSQFRRMLRSSSSPGGGVSCDHATFT 127

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
             +SACA  A++     +HG+ + +     + V N+++  Y        A + F  +  +
Sbjct: 128 TVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESPGSAERAFHGMAER 187

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282
           +  +W  +I G         +I LF+ MR   V  +  +Y + L AC+ G L  K  +  
Sbjct: 188 NVITWTAMISGMAREELYKDSIVLFQQMRRT-VDANSATYSSSLLACA-GSLALKEGQQI 245

Query: 283 DEMQADSVKPTEMHY-ACMVDLLGRAGLMEDAVKLIKNLPVEPD 325
             +   +   T++H  + ++DL  + GLMED + + + L  +PD
Sbjct: 246 HGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFR-LCRQPD 288



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     E+  +F+    KN +SWN+++A FA++    +  +L   M      P  VT
Sbjct: 368 MYSKCGELEESIQVFNETPSKNSISWNSIIAAFARHGQGSEVFKLFESMKADGANPTDVT 427

Query: 61  LTNVLPACARGHFLRPGKEI 80
             ++L  C+     + G EI
Sbjct: 428 FLSLLHGCSHVGSAKKGLEI 447


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  284 bits (726), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 148/417 (35%), Positives = 239/417 (57%), Gaps = 7/417 (1%)

Query: 2   YAKSSRPAEASYLF--HNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           Y+++    EA  LF  HN    ++V+WNAM+A + Q+    K L+L   M    E  +  
Sbjct: 462 YSRNRCMKEAEILFERHNF---DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDF 518

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL  V   C     +  GK++HA  I+ G + DL++++ + DMY KCG ++ AQ  F+ I
Sbjct: 519 TLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSI 578

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              D+V++  +I G  +  +   +  +FS+MRL+G+  D  +      A + L A++QG+
Sbjct: 579 PVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGR 638

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH   ++ +     FV  S++D Y + G ID A  +F  + + +  +WN +++G    G
Sbjct: 639 QIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHG 698

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
           E    + LF+ M+  G+  D V++I +L+ACSH GLV +  K+   M  D  +KP   HY
Sbjct: 699 EGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHY 758

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +C+ D LGRAGL++ A  LI+++ +E  A+++  LL ACR+ G+ E G   A  L  L+P
Sbjct: 759 SCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEP 818

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
                Y+LLSNMYA A KWDE    R +MK  + KK+PG SW++ ++++  FVV+DR
Sbjct: 819 LDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDR 875



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 170/334 (50%), Gaps = 2/334 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +   A  +F N++E++++SWN+++A  AQN LE++A+ L  ++      P+  T
Sbjct: 359 MYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYT 418

Query: 61  LTNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           +T+VL A +     L   K++H   I+     D F++ AL D Y++  C+  A+ +F   
Sbjct: 419 MTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERH 478

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V++N ++ GY+Q+ D  ++L LF+ M   G + D  +       C  L AI QGK+
Sbjct: 479 NFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQ 538

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+      L+V++ ILD Y + G +  A   FD +PV D  +W T+I G    GE
Sbjct: 539 VHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGE 598

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A ++F  MR  GV  D  +   +  A S    +E+G++        +          
Sbjct: 599 EERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTS 658

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +VD+  + G ++DA  L K + +  +   W A+L
Sbjct: 659 LVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAML 691



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 130/282 (46%), Gaps = 4/282 (1%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           + VT   +L    +   L  G+++H   ++ GL+  L ++N+L +MY K      A+ VF
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373

Query: 117 -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL-AAI 174
            N+S RD +S+N +I G +Q     E++ LF ++   G+K D  +    + A ++L   +
Sbjct: 374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGL 433

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
              K++H   I+ +  +  FV+ +++D Y+R+  +  A  +F+     D  +WN ++ GY
Sbjct: 434 SLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGY 492

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
               +    + LF  M + G   D  +   +   C     + +GK+              
Sbjct: 493 TQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDL 552

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
              + ++D+  + G M  A     ++PV PD   W  ++  C
Sbjct: 553 WVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGC 593



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 97/194 (50%), Gaps = 6/194 (3%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           L  GK  HARI+    N + FL N L  MY+KCG L  A+ VF+ +  RD VS+N ++  
Sbjct: 55  LMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114

Query: 133 YSQTSDC-----SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
           Y+Q+S+C      ++  LF  +R   +    ++    +  C +   +   +  HG   + 
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKI 174

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            L    FVA ++++ Y + G++     +F+ +P +D   WN ++  Y  +G  + AI+L 
Sbjct: 175 GLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLS 234

Query: 248 EAMREDGVGYDPVS 261
            A    G+  + ++
Sbjct: 235 SAFHSSGLNPNEIT 248



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 115/270 (42%), Gaps = 31/270 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K  +  E   LF  +  +++V WN M+  + +   + +A+ L          PN +T
Sbjct: 189 IYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEIT 248

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L                  + ARI   G + D     +  +        N A +V  I F
Sbjct: 249 L-----------------RLLARI--SGDDSDAGQVKSFANG-------NDASSVSEIIF 282

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R     N  +  Y  +   S  L  F++M    ++ D V+F+  ++    + ++  G+++
Sbjct: 283 R-----NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQV 337

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H + ++  L   L V+NS+++ Y +  +   A  +FD +  +D  SWN++I G    G  
Sbjct: 338 HCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLE 397

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACS 270
             A+ LF  +   G+  D  +  ++L A S
Sbjct: 398 VEAVCLFMQLLRCGLKPDQYTMTSVLKAAS 427



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 73/362 (20%), Positives = 149/362 (41%), Gaps = 43/362 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLEL-----KALQLVREMPIHNEF 55
           MY+K      A  +F  + ++++VSWN+++A +AQ+   +     +A  L R +     +
Sbjct: 83  MYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVY 142

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
            + +TL+ +L  C    ++   +  H    + GL+ D F+  AL ++Y K G +   + +
Sbjct: 143 TSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVL 202

Query: 116 F-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM------GAISAC 168
           F  + +RD V +N+++  Y +     E++ L S     G+  + ++        G  S  
Sbjct: 203 FEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDA 262

Query: 169 ANLAAIKQGKEIHGVT--------IRKHLHTHLFVA--NSILDFYTRSGRIDLANKIF-- 216
             + +   G +   V+        + ++LH+  + A      D        D    I   
Sbjct: 263 GQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILML 322

Query: 217 ------DCLPVKDSASWNTLILGYG-MLGEVDTAINLFEAMREDGVG---------YDPV 260
                 D L +        L LG   ML   ++ IN++  +R+ G            D +
Sbjct: 323 ATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLI 382

Query: 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           S+ +++   +  GL  +    F ++    +KP +     M  +L  A  + + + L K +
Sbjct: 383 SWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQY---TMTSVLKAASSLPEGLSLSKQV 439

Query: 321 PV 322
            V
Sbjct: 440 HV 441



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  LF  I   NI +WNAM+   AQ+    + LQL ++M      P+ VT
Sbjct: 662 MYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVT 721

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK--GLNFDLFLTNALTDMYAKCGCLNLAQNV 115
              VL AC+    +    + H R +    G+  ++   + L D   + G +  A+N+
Sbjct: 722 FIGVLSACSHSGLVSEAYK-HMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENL 777


>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 824

 Score =  284 bits (726), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 146/421 (34%), Positives = 256/421 (60%), Gaps = 8/421 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++     ++  +FH++ E+++VSWN M++ F QN L+ + L LV EM       + +T
Sbjct: 366 MYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYIT 425

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           +T +L A +       GK+ H  +IR+G+ F+  + + L DMYAK G + ++Q +F  S 
Sbjct: 426 VTALLSAASNLRNKEIGKQTHGFLIRQGIQFE-GMNSYLIDMYAKSGLIRISQKLFEGSG 484

Query: 121 ---RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              RD+ ++N +I GY+Q     E+  +F +M    ++ + V+    + AC+ + ++  G
Sbjct: 485 YAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLG 544

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K++HG +IR++L  ++FVA++++D Y+++G I  A  +F     ++S ++ T+ILGYG  
Sbjct: 545 KQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQH 604

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMH 296
           G  + AI+LF +M+E G+  D ++++A+L+ACS+ GLV++G K F++M +  +++P+  H
Sbjct: 605 GMGERAISLFLSMQELGIKPDAIAFVAVLSACSYSGLVDEGLKIFEDMREVYNIQPSSEH 664

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFML 355
           Y C+ D+LGR G + +A + +K L  E + A +WG+LLG+CR++G +EL    +E L  L
Sbjct: 665 YCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCRLHGELELAETVSERLAKL 724

Query: 356 K--PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
                  GY +LLSNMYAE   W    +VR+ M+ +  KK  G S ++    V  FV  D
Sbjct: 725 DKGKNFSGYEVLLSNMYAEEQNWKSVDRVRKGMREKGLKKEVGRSGIEVAGHVNCFVSRD 784

Query: 414 R 414
           +
Sbjct: 785 Q 785



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 195/420 (46%), Gaps = 43/420 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MYA+      +  +F +  E+NI  WN M+  + QN   +++++L  E     E   + V
Sbjct: 264 MYAELGDLESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEV 323

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T      A +    +  G++ H  + +      + + N+L  MY++CG +  +  VF ++
Sbjct: 324 TFLLAASAVSGLQQVELGRQFHGFVSKNFRELPIVIINSLMVMYSRCGFVQKSFGVFHSM 383

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD VS+N +I  + Q     E L L  EM+  G K D ++    +SA +NL   + GK
Sbjct: 384 RERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGK 443

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD--CLPVKDSASWNTLILGYGM 236
           + HG  IR+ +     + + ++D Y +SG I ++ K+F+      +D A+WN++I GY  
Sbjct: 444 QTHGFLIRQGIQFE-GMNSYLIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQ 502

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK----------------- 279
            G  +    +F  M E  +  + V+  +IL ACS  G V+ GK                 
Sbjct: 503 NGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIRQYLDQNVFV 562

Query: 280 --------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IKNLPV 322
                         KY + M + + +   + Y  M+   G+ G+ E A+ L   ++ L +
Sbjct: 563 ASALVDMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQELGI 622

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAE---HLFMLKPQHCGYYILLSNMYAEAGKWDEA 379
           +PDA  + A+L AC   G V+ G    E    ++ ++P    +Y  +++M    G+ +EA
Sbjct: 623 KPDAIAFVAVLSACSYSGLVDEGLKIFEDMREVYNIQPSS-EHYCCITDMLGRVGRVNEA 681



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 190/425 (44%), Gaps = 52/425 (12%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F N+  KN+V+WN +++ + +     +A +    M      P+ V+  NV PA A    
Sbjct: 174 VFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVATSRS 233

Query: 74  LRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILI 130
           ++     +  +++ G  +  DLF+ ++   MYA+ G L  ++ VF+      +  +N +I
Sbjct: 234 IKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEVWNTMI 293

Query: 131 VGYSQTSDCSESLSLFSEMRLLGMKH---DVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
             Y Q     ES+ LF E   +G K    D V+F+ A SA + L  ++ G++ HG   + 
Sbjct: 294 GVYVQNDCLVESIELFLEA--IGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFVSKN 351

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                + + NS++  Y+R G +  +  +F  +  +D  SWNT+I  +   G  D  + L 
Sbjct: 352 FRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLMLV 411

Query: 248 EAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG------KKYFDEMQADS- 289
             M++ G   D ++  A+L+A S           HG L+ +G        Y  +M A S 
Sbjct: 412 YEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQFEGMNSYLIDMYAKSG 471

Query: 290 --------------VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGAL 332
                          +  +  +  M+    + G  E+   + + +    + P+A    ++
Sbjct: 472 LIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASI 531

Query: 333 LGACRIYGNVELGAWAAEHLFMLKP---QHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
           L AC   G+V+LG     H F ++    Q+      L +MY++AG    A K  E M S+
Sbjct: 532 LPACSQVGSVDLGKQL--HGFSIRQYLDQNVFVASALVDMYSKAG----AIKYAENMFSQ 585

Query: 390 EAKKN 394
             ++N
Sbjct: 586 TKERN 590



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 158/345 (45%), Gaps = 19/345 (5%)

Query: 8   PAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP--NSVTLTNVL 65
           P  A  LF  I +   V WN ++  F  N L  +AL     M     F   ++ T ++ L
Sbjct: 55  PQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTKCDAYTYSSTL 114

Query: 66  PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC--------GCL--NLAQNV 115
            ACA    L+ GK +H  +IR   N    + N+L +MY  C         C   ++ + V
Sbjct: 115 KACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDVVRKV 174

Query: 116 F-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F N+  ++ V++N LI  Y +T   +E+   F+ M  + +K   VSF+    A A   +I
Sbjct: 175 FDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVATSRSI 234

Query: 175 KQGKEIHGVTIR--KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           K+    +G+ ++        LFV +S +  Y   G ++ + ++FD    ++   WNT+I 
Sbjct: 235 KKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEVWNTMIG 294

Query: 233 GYGMLGEVDTAINLF-EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
            Y     +  +I LF EA+    +  D V+++   +A S    VE G+++   +  +  +
Sbjct: 295 VYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFVSKNFRE 354

Query: 292 -PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            P  +  + MV +  R G ++ +  +  ++  E D   W  ++ A
Sbjct: 355 LPIVIINSLMV-MYSRCGFVQKSFGVFHSMR-ERDVVSWNTMISA 397


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  284 bits (726), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 145/404 (35%), Positives = 238/404 (58%), Gaps = 4/404 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + E+N+ +WNAMV+   Q       L L REM      P+  TL +VL  CA    
Sbjct: 45  VFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRA 104

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
              GK++HA +++ G  F+L + ++L  MY K G L   + V   +  R+ V++N LI G
Sbjct: 105 SYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAG 164

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
            +Q       L L++ M++ G++ D ++ +  IS+ A LA + QG++IH   I+   ++ 
Sbjct: 165 NAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSA 224

Query: 193 LFVANSILDFYTRSGRIDLANK-IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
           + V +S++  Y++ G ++ + K + DC    DS  W+++I  YG  G  + A++LFE M 
Sbjct: 225 VAVLSSLISMYSKCGCLEDSMKALLDC-EHPDSVLWSSMIAAYGFHGRGEEAVHLFEQME 283

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLM 310
           ++G+G + V+++++L ACSH GL EKG  +F  M +   +KP   HY C+VDLLGR+G +
Sbjct: 284 QEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCL 343

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370
           ++A  +I+++P+E D  IW  LL ACRI+ N ++    AE +  L PQ    Y+LLSN++
Sbjct: 344 DEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVLLSNIH 403

Query: 371 AEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           A A +W + SKVR  M+ R  KK PG SW++ ++ V  F + D+
Sbjct: 404 ASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDK 447



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY KS    E   +   +  +N+V+WN ++A  AQN      L L   M +    P+ +T
Sbjct: 133 MYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKIT 192

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL-NLAQNVFNIS 119
           L +V+ + A    L  G++IHA  I+ G N  + + ++L  MY+KCGCL +  + + +  
Sbjct: 193 LVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCE 252

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V ++ +I  Y       E++ LF +M   G+  + V+F+  + AC++    ++G  
Sbjct: 253 HPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMG 312

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
              + + K+ L   L     ++D   RSG +D A  +   +P++ D   W TL+
Sbjct: 313 FFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLL 366



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 124/284 (43%), Gaps = 37/284 (13%)

Query: 102 MYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSES------------------ 142
           MY K G +  A   FN +  R+ +S+NILI G+ Q  D   +                  
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAM 60

Query: 143 -------------LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
                        L LF EM  LG   D  +    +  CA L A   GK++H   ++   
Sbjct: 61  VSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGY 120

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             +L V +S+   Y +SG +    K+   + +++  +WNTLI G    G  +  ++L+  
Sbjct: 121 EFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNM 180

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M+  G+  D ++ ++++++ +    + +G++   E             + ++ +  + G 
Sbjct: 181 MKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGC 240

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
           +ED++K + +    PD+ +W +++ A   +G  E     A HLF
Sbjct: 241 LEDSMKALLDCE-HPDSVLWSSMIAAYGFHGRGE----EAVHLF 279


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 140/418 (33%), Positives = 247/418 (59%), Gaps = 7/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K+  P  +  +F    +K+  +W+++++ FAQN   L ALQ  R M      P+   
Sbjct: 69  LYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHI 128

Query: 61  LTNVLPACARGHFLRP---GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             +   AC    FLR    GK +H   ++ G   D+F+ ++L DMYAKCG +  A+++F+
Sbjct: 129 YPSATKACG---FLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFD 185

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  R+ VS++ +I GY+Q  D  E+L+LF +  +  +  +  +F   I  C++   ++ 
Sbjct: 186 EMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLEL 245

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK IHG+ ++    +  FV ++++  Y++ G I+ A ++FD +P ++   WN++++    
Sbjct: 246 GKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQ 305

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
                    LFE M   G+  + + ++++L ACSH GLVEKG++YF  M+   ++P   H
Sbjct: 306 HAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEH 365

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YA +VDLLGRAG +++AV +IK +P+ P  ++WGALL  CRI+ + E+ A+ A+ +  + 
Sbjct: 366 YASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMD 425

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               G ++LLSN YA AG+++EA+++R++++ R  KK  G SWV+  ++V  F   DR
Sbjct: 426 SSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDR 483



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 156/336 (46%), Gaps = 9/336 (2%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N   + N+L +  R   LR G ++HA I++ GL     +++ L ++Y+K      +  VF
Sbjct: 24  NYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVF 83

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           +    +   +++ +I  ++Q      +L  F  M   G++ D   +  A  AC  L    
Sbjct: 84  DETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSD 143

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK +H + ++   +  +FV +S++D Y + G I  A  +FD +P ++  SW+ +I GY 
Sbjct: 144 VGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYA 203

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
            L +   A+ LF+    + V  +  ++ +++  CS    +E GK         S   +  
Sbjct: 204 QLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSF 263

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE--LGAWAAEHLF 353
             + ++ L  + G++E A ++   +P   +  +W ++L AC  + + +   G +      
Sbjct: 264 VGSALISLYSKCGVIEGAYQVFDEIPTR-NLGLWNSMLIACAQHAHTQRVFGLFEEMGNV 322

Query: 354 MLKPQHCGYYILLSNMYA--EAGKWDEASKVRELMK 387
            +KP    +   LS +YA   AG  ++  +   LM+
Sbjct: 323 GMKPN---FIXFLSVLYACSHAGLVEKGREYFSLMR 355


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 148/421 (35%), Positives = 241/421 (57%), Gaps = 36/421 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     EA  +   +  K++VSWN+MVA +AQN     AL + REM    + P++ T
Sbjct: 177 LYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACT 236

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + ++LPA                           +TN  ++       L + +   N+  
Sbjct: 237 MASLLPA---------------------------VTNTSSE-----NVLYVEEMFMNLEK 264

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  VS+N++I  Y + S   +S+ L+ +M    ++ D ++    + AC +L+A+  G+ I
Sbjct: 265 KSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRI 324

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H    RK L  ++ + NS++D Y R G ++ A ++FD +  +D ASW +LI  YGM G+ 
Sbjct: 325 HEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQG 384

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             A+ LF  M+  G   D ++++AIL+ACSH GL+ +GK YF +M  D  + P   H+AC
Sbjct: 385 YNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFAC 444

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLLGR+G +++A  +IK +P++P+  +WGALL +CR+Y N+++G  AA+ L  L P+ 
Sbjct: 445 LVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEE 504

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
            GYY+LLSN+YA+AG+W E + +R LMK R  +K PG S V+  ++V  F+  D   T+ 
Sbjct: 505 SGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGD---TYH 561

Query: 420 P 420
           P
Sbjct: 562 P 562



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 153/323 (47%), Gaps = 15/323 (4%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           K +H+++     + +  L   L   YA  G   LA+NVF+ I  R+ + YN++I  Y   
Sbjct: 52  KNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNN 111

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               ++L +F +M   G   D  ++   + AC+    ++ G ++HG   +  L  +LFV 
Sbjct: 112 HLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVG 171

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N ++  Y + G +  A  + D +  KD  SWN+++ GY    + D A+++   M  DGV 
Sbjct: 172 NGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREM--DGVR 229

Query: 257 YDP--VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
             P   +  ++L A ++     +   Y +EM  +  K + + +  M+ +  +  +   +V
Sbjct: 230 QKPDACTMASLLPAVTNTS--SENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSV 287

Query: 315 KL---IKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSN 368
            L   +    VEPDA    ++L AC     + LG     H ++ + + C   +L   L +
Sbjct: 288 DLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRI--HEYVERKKLCPNMLLENSLID 345

Query: 369 MYAEAGKWDEASKVRELMKSREA 391
           MYA  G  ++A +V + MK R+ 
Sbjct: 346 MYARCGCLEDAKRVFDRMKFRDV 368



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 41/97 (42%)

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           IK  K +H        H +  +   ++  Y   G   LA  +FD +P ++   +N +I  
Sbjct: 48  IKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRS 107

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
           Y      D A+ +F  M   G   D  +Y  +L ACS
Sbjct: 108 YMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACS 144


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 144/413 (34%), Positives = 233/413 (56%), Gaps = 32/413 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +   I  +++VSWN+MV+ +AQN     AL+L REM   N  PN  T
Sbjct: 164 MYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCT 223

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + ++LPA                           +TN  +D       L + +    ++ 
Sbjct: 224 MASLLPA---------------------------VTNTTSD-----NVLYVKEMFLKLTK 251

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  +S+N++I  Y   S   E++ L+S+M   G++ DVVS +  + A  +L+A+  G+ +
Sbjct: 252 KSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRV 311

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H    RK L  +L + N+++D Y + G +  A  +F+ +  +D  SW ++I  YG  G+ 
Sbjct: 312 HKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQG 371

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A+ +F  MR  G+  D ++++++L ACSH GL++ G+ YF+ M    + P   H+AC+
Sbjct: 372 RDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAECGITPKLEHFACV 431

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           VDLLGRAG +++A   I+ +P+EPD  +WG LL ACR+Y N+ +G  AA+ L ML P+H 
Sbjct: 432 VDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHS 491

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           GYY+LLSN+YA+AG+W + + +R +M+ +  KK PG S V+  D V  F+  D
Sbjct: 492 GYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGD 544



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 143/336 (42%), Gaps = 35/336 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YA    P  A ++F  I +KN+V +N M+ ++  N L   AL + + M      P+  T
Sbjct: 63  VYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYT 122

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL A +R   L  G +IH  +++ GL+ +L++ N L  MY KC  L  AQ V + I 
Sbjct: 123 YPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIP 182

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N ++  Y+Q    +++L L  EM  L +K +  +    + A  N         
Sbjct: 183 CRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTN--------- 233

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
                                   T S  +    ++F  L  K   SWN +I  Y     
Sbjct: 234 ------------------------TTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSM 269

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ L+  M  +GV  D VS +++L A      +  G++     +   + P  +    
Sbjct: 270 PKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENA 329

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++D+  + G + DA  +   +    D   W +++ A
Sbjct: 330 LIDMYAKCGCLRDARAVFNQMQFR-DVVSWTSIISA 364



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 150/322 (46%), Gaps = 14/322 (4%)

Query: 78  KEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           K++H +++  + L ++  +   L  +YA CG   LA+++F+ I+ ++ V +N++I  Y  
Sbjct: 38  KKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVN 97

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
                ++L ++  M   G   D+ ++   + A +   ++  G +IHG  ++  L  +L+V
Sbjct: 98  NHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYV 157

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            N ++  Y +   +  A ++ D +P +D  SWN+++  Y   G  + A+ L   M    +
Sbjct: 158 GNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNL 217

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
             +  +  ++L A ++         Y  EM     K + + +  M+ +     + ++AV 
Sbjct: 218 KPNDCTMASLLPAVTN--TTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVV 275

Query: 316 LIKNLP---VEPDANIWGALLGACRIYGNVE-LGAWAAEHLFMLKPQHCGYYIL---LSN 368
           L   +    VEPD     ++L A   YG++  L      H F  + +     +L   L +
Sbjct: 276 LYSQMEANGVEPDVVSIVSVLPA---YGDLSALSLGRRVHKFAERKKLLPNLLLENALID 332

Query: 369 MYAEAGKWDEASKVRELMKSRE 390
           MYA+ G   +A  V   M+ R+
Sbjct: 333 MYAKCGCLRDARAVFNQMQFRD 354


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 158/452 (34%), Positives = 247/452 (54%), Gaps = 37/452 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP---- 56
           MYAKS   A+A  +F  + EK+ VSWN++++   QN     A ++   MP +++      
Sbjct: 349 MYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSV 408

Query: 57  ----------------------------NSVTLTNVLPACARGHFLRPGKEIHARIIRKG 88
                                       + VT  N+L A +         +IHA +++  
Sbjct: 409 IGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYC 468

Query: 89  LNFDLFLTNALTDMYAKCGCLNLAQNVFN--ISFRDEVSYNILIVGYSQTSDCSESLSLF 146
           L+ D  + NAL   Y KCG +N  + +F      RDEVS+N +I GY       +++ L 
Sbjct: 469 LSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLV 528

Query: 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
             M   G + D  +F   +SACA++A +++G E+H   IR  L + + V ++++D Y++ 
Sbjct: 529 WFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKC 588

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           GRID A++ F+ +P+++  SWN++I GY   G  + A+ LF  M  DG   D V+++ +L
Sbjct: 589 GRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVL 648

Query: 267 TACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD 325
           +ACSH G VE+G ++F  M +   + P   H++CMVDLLGRAG +++    I ++P++P+
Sbjct: 649 SACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPN 708

Query: 326 ANIWGALLGA-CRIYG-NVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVR 383
             IW  +LGA CR  G N ELG  AAE L  L+PQ+   Y+LL+NMYA   KW++ +K R
Sbjct: 709 VLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKAR 768

Query: 384 ELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
             MK    KK  GCSWV  +D V  FV  D++
Sbjct: 769 TAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKL 800



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 139/296 (46%), Gaps = 20/296 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y +      A  LF  ++ +N+V+W  +++ + QN    +A    R+M      PN   
Sbjct: 143 IYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYA 202

Query: 61  LTNVLPACARG--HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC-GCLNLAQNVFN 117
             + L AC        + G +IH  I +     D+ + N L  MY  C    N A++VF+
Sbjct: 203 FGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFD 262

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM-----KHDVVSFMGAISACANL 171
            I  R+ +S+N +I  YS+  D   +  LFS M+  G+      +D  S    +      
Sbjct: 263 GIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLE----- 317

Query: 172 AAIKQGKEIHGVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
              ++G+E+H   IR  L+ + + + N +++ Y +SG I  A  +F+ +  KDS SWN+L
Sbjct: 318 EGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSL 377

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG-GLVEKGKKYFDEM 285
           I G       + A  +F  M E    YD VS+ +++ A S     V +  KYF +M
Sbjct: 378 ISGLDQNECSEDAAEMFSLMPE----YDQVSWNSVIGALSDSEASVSQAVKYFLQM 429



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 152/293 (51%), Gaps = 22/293 (7%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           +E+H + I+ G   +LFL+N L ++Y + G L  AQ +F+ +S R+ V++  LI GY+Q 
Sbjct: 119 RELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQN 178

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISAC--ANLAAIKQGKEIHGVTIRKHLHTHLF 194
               E+ + F +M   G   +  +F  A+ AC  +  +  K G +IHG+  +    + + 
Sbjct: 179 GKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVV 238

Query: 195 VANSILDFYTRSGRIDLAN---KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
           V N ++  Y     +D AN    +FD + +++S SWN++I  Y   G+  +A +LF +M+
Sbjct: 239 VCNVLISMYGSC--LDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQ 296

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP--TEMHYAC---MVDLLGR 306
           ++G+G+          A S   ++E+G++   E+ A  ++    +   A    +V++  +
Sbjct: 297 KEGLGFS----FKPNDAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAK 352

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +G + DA  + + L VE D+  W +L+         E    AAE +F L P++
Sbjct: 353 SGAIADACSVFE-LMVEKDSVSWNSLISG---LDQNECSEDAAE-MFSLMPEY 400



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 52/99 (52%)

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           ++ +E+H  +I+     +LF++N++++ Y R G +  A K+FD +  ++  +W  LI GY
Sbjct: 116 EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 175

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
              G+ D A   F  M   G   +  ++ + L AC   G
Sbjct: 176 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 214


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 136/417 (32%), Positives = 243/417 (58%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+  +  +A  +F  I++K++VSWN+M++ +++ R   +A+ L REM      PN ++
Sbjct: 171 MYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMS 230

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +VL AC     L+ G  +   ++   +  + F+ +AL  MY KCG L  A+ +F+ + 
Sbjct: 231 LVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMK 290

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D+V++N +I GY+Q     E++ LF +MR+     D ++ +G +SACA++ A+  GK+
Sbjct: 291 KKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQ 350

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +      +     ++V  +++D Y + G +D A ++F  +P K+  SWN +I      G+
Sbjct: 351 VEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQ 410

Query: 240 VDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
              A+ LF++M  +G    P  ++++ +L+AC H GLV++G++ F  M +   + P   H
Sbjct: 411 AQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEH 470

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y+CMVDL  RAG +E+A   +  +P +PD  I GALLGAC+   N+++     + L  L+
Sbjct: 471 YSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELE 530

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P + G Y++ S +YA   +WD+++++R LMK +   K PGCSW+    ++ +F   D
Sbjct: 531 PSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGD 587



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 176/340 (51%), Gaps = 9/340 (2%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANF--AQNRLELKALQLVREMPIHNEFPNSVTLTNVLP 66
           A AS  F NI +    S+N M+     A N+  L AL+    M      PN++T   +  
Sbjct: 77  AYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSL-ALEFYSRMKFLGLKPNNLTYPFLFI 135

Query: 67  ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVS 125
           AC+    +  G+  H  +IR+GL+ D  ++++L  MYA+CG +  A+ VF+ IS +D VS
Sbjct: 136 ACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVS 195

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           +N +I GYS+     E++ LF EM   G + + +S +  + AC  L  +K G  +    +
Sbjct: 196 WNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVV 255

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
              +  + F+ ++++  Y + G +  A +IFD +  KD  +WN +I GY   G  + AI 
Sbjct: 256 ENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIK 315

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY--ACMVDL 303
           LF+ MR      D ++ I IL+AC+  G ++ GK+   E+ A      +  Y    +VD+
Sbjct: 316 LFQDMRMSSTAPDQITLIGILSACASIGALDLGKQV--EIYASERGFQDDVYVGTALVDM 373

Query: 304 LGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             + G +++A ++   +P + + + W A++ A   +G  +
Sbjct: 374 YAKCGSLDNAFRVFYGMPKKNEVS-WNAMISALAFHGQAQ 412



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 174/389 (44%), Gaps = 68/389 (17%)

Query: 43  LQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL---NFDLFLTNAL 99
           LQ     P  N    S    ++L  C     ++  K+IHA+++   +   N  L+    L
Sbjct: 17  LQKPHSKPNPNRQALSDKFNSLLQQCLS---IKQLKQIHAQLLTNSIHKPNSFLYKIADL 73

Query: 100 TDM-YAKCGCLNLAQNVF--NISFRDEVSYNILIVGYSQT-SDCSESLSLFSEMRLLGMK 155
            D  YA         +VF  NI    E S+N++I G S   +  S +L  +S M+ LG+K
Sbjct: 74  KDFAYA---------SVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLK 124

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
            + +++     AC+NL A++ G+  H   IR+ L     V++S++  Y R G++  A K+
Sbjct: 125 PNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKV 184

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275
           FD +  KD  SWN++I GY  +     A+ LF  M E G   + +S +++L AC   G +
Sbjct: 185 FDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDL 244

Query: 276 EKG-----------------------------------KKYFDEMQADSVKPTEMHYACM 300
           + G                                   ++ FD M+    K  ++ +  M
Sbjct: 245 KLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMK----KKDKVTWNAM 300

Query: 301 VDLLGRAGLMEDAVKLIKNLPVE---PDANIWGALLGACRIYGNVELGA----WAAEHLF 353
           +    + G+ E+A+KL +++ +    PD      +L AC   G ++LG     +A+E  F
Sbjct: 301 ITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGF 360

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKV 382
                + G    L +MYA+ G  D A +V
Sbjct: 361 Q-DDVYVG--TALVDMYAKCGSLDNAFRV 386


>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 703

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 153/426 (35%), Positives = 247/426 (57%), Gaps = 8/426 (1%)

Query: 2   YAKSSRPAEASYLFHNI----AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           YA   + AEA  LF  +     E N V+WN +   + Q R    A+ L+REM       +
Sbjct: 249 YAAVGQWAEAMELFRRMRDEGTEVNSVTWNTIAGGYIQMRDYRAAVGLIREMVRGGAEVD 308

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
            VTL   L AC+R  +LR GKEIH   +R   +    ++NAL  MYA+C  +  A+ +F 
Sbjct: 309 YVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDMECARMLFR 368

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSE-SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
            +     V++N ++  ++  SDC+E + S+F EM   G+K + V+ +  ++ CA +A ++
Sbjct: 369 MLECPGVVTWNTMLSSFA-LSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANLQ 427

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G+E+HG  ++     +  + NS++D Y++SGR+ +A  +FD +   D  S+ ++I GYG
Sbjct: 428 HGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYG 487

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
           M G+   A+ LFE M + G+  D +  + +L+ACSH GLV +G++ F++M     +KP  
Sbjct: 488 MQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQM 547

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HY+CM+DL  RAGL+E A +++ + P  P + +W AL+GAC   GN+E+G  AA  L  
Sbjct: 548 EHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGACHDRGNIEIGERAARKLLE 607

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           ++ ++ G+Y+L++NMYA AG WDE + VR+LM+     K PG +W    +    F+V DR
Sbjct: 608 MRTENAGHYVLIANMYAAAGCWDELATVRKLMRDLGVTKAPGLAWTDLGNGFTPFLVGDR 667

Query: 415 MKTFTP 420
                P
Sbjct: 668 SNPLAP 673



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 194/436 (44%), Gaps = 82/436 (18%)

Query: 24  VSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHAR 83
           + +N ++++  ++ L L+AL   +EM  +   P+  T  +VL ACA    L  G+ +H  
Sbjct: 139 LPYNVLISSCLRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMH 198

Query: 84  IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSES 142
               G++ +LF  NAL  MYAKCG L  A+ VF+ +  RD VS+N +I  Y+     +E+
Sbjct: 199 AAGAGMDGNLFFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEA 258

Query: 143 LSLFSEMR-----------------------------LL------GMKHDVVSFMGAISA 167
           + LF  MR                             L+      G + D V+ +  ++A
Sbjct: 259 MELFRRMRDEGTEVNSVTWNTIAGGYIQMRDYRAAVGLIREMVRGGAEVDYVTLVIGLNA 318

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C+ +  ++ GKEIHG+ +R        V+N+++  Y R   ++ A  +F  L      +W
Sbjct: 319 CSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDMECARMLFRMLECPGVVTW 378

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVE 276
           NT++  + +    + A ++F  M   GV  + V+ +  L  C+           HG +V+
Sbjct: 379 NTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHIVK 438

Query: 277 KGKKYFD-------EMQA------------DSVKPTEM-HYACMVDLLGRAGLMEDAVKL 316
            G K +        +M +            D++   +M  Y  M+   G  G    A++L
Sbjct: 439 HGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRL 498

Query: 317 IKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFM-------LKPQHCGYYILL 366
            + +    ++PD  I   +L AC   G V  G    E LF        +KPQ   +Y  +
Sbjct: 499 FEQMIDSGIKPDHIIMVTVLSACSHSGLVLEG----EELFNKMVISYGIKPQ-MEHYSCM 553

Query: 367 SNMYAEAGKWDEASKV 382
            ++YA AG  ++A ++
Sbjct: 554 IDLYARAGLLEKAEEM 569



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+      A  LF  +    +V+WN M+++FA +    +A  + REM      PN VT
Sbjct: 353 MYARCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVT 412

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +   L  CAR   L+ G+E+H  I++ G      L N+L DMY+K G L++AQNVF+ + 
Sbjct: 413 VVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMD 472

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D +SY  +I GY      + +L LF +M   G+K D +  +  +SAC++   + +G+E
Sbjct: 473 DCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEE 532

Query: 180 I-HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
           + + + I   +   +   + ++D Y R+G ++ A ++ D  P   +++ W  L+
Sbjct: 533 LFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALV 586



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 1/196 (0%)

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNIL 129
           R H LR G ++HA  +  GL+    L   L  +Y     L  +           + YN+L
Sbjct: 86  RSH-LRLGVQLHALSLSLGLSRHPILLPRLLSVYTSHPSLLPSAASVAADSTLPLPYNVL 144

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I    +     ++L+ + EM   G+  DV ++   + ACA    +  G+ +H       +
Sbjct: 145 ISSCLRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGM 204

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             +LF  N+++  Y + G +  A K+FD +  +D  SWN++I  Y  +G+   A+ LF  
Sbjct: 205 DGNLFFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRR 264

Query: 250 MREDGVGYDPVSYIAI 265
           MR++G   + V++  I
Sbjct: 265 MRDEGTEVNSVTWNTI 280


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  283 bits (725), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 144/413 (34%), Positives = 243/413 (58%), Gaps = 29/413 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++  R   A  +F+ +AE+N  SWN+M+  + QN    +AL+L ++M ++   P+  +
Sbjct: 322 MYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFS 381

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L+++L +C      + G+E+H  I+R  +  +  L   L DMYAKCG ++ A  V++ + 
Sbjct: 382 LSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTI 441

Query: 121 ---RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              R+   +N ++ GY+      ES + F EM    +++DV++ +  ++           
Sbjct: 442 KKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNL---------- 491

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
                          L +  +++D Y++ G I  A  +FD +  K+  SWN +I GY   
Sbjct: 492 ---------------LVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKH 536

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G    A+ L+E M + G+  + V+++AIL+ACSH GLVE+G + F  MQ D +++    H
Sbjct: 537 GCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEH 596

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y CMVDLLGRAG +EDA + ++ +P+EP+ + WGALLGACR++ ++++G  AA+ LF L 
Sbjct: 597 YTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELD 656

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
           PQ+ G Y+++SN+YA AG+W E   +R++MK +  KK+PG SW++   E+Q F
Sbjct: 657 PQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIF 709



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 203/411 (49%), Gaps = 26/411 (6%)

Query: 1   MYAKSSRPAEASY---LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           +YA+S    +  Y   LF  + E+N+ +WN M+  +A+    ++A  +   M      P+
Sbjct: 115 LYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPD 174

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           + T  + L  C        GK++H+++I  G   D F+ NAL DMYAKC        VF+
Sbjct: 175 NFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFD 234

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL--GMKHDVVSFMGAISACANLAAI 174
            +  R++V++N +I   +Q    +++L LF  M+    G++ D  +F   ++ CAN    
Sbjct: 235 EMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRND 294

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
            QG++IH   IR ++  ++ V   ++  Y+  GR++ A +IF+ +  +++ SWN++I GY
Sbjct: 295 NQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGY 354

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              GE   A+ LF+ M+ +G+  D  S  ++L++C      +KG++  + +  ++++   
Sbjct: 355 QQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEG 414

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN--IWGALLGACRIYGNVELGAWAAEHL 352
           +    +VD+  + G M+ A K + +  ++ D N  +W ++L     Y N  L   +  H 
Sbjct: 415 ILQVVLVDMYAKCGSMDYAWK-VYDQTIKKDRNTALWNSILAG---YANKGLKKESFNHF 470

Query: 353 FMLKPQHCGYYIL--------------LSNMYAEAGKWDEASKVRELMKSR 389
             +      Y +L              L +MY++ G   +A  V + M  +
Sbjct: 471 LEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNMNGK 521



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 166/369 (44%), Gaps = 45/369 (12%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN---LAQ 113
           N +  ++++  C   +  + GK IH ++I  G N D +L   +  +YA+ GCL+    A+
Sbjct: 70  NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYAR 129

Query: 114 NVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
            +F  +  R+  ++N +I+ Y++  D  E+  +F  M  +G+  D  +F  A+  C  L 
Sbjct: 130 KLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALR 189

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           +   GK++H   I        FV N+++D Y +    +   K+FD +  ++  +WN++I 
Sbjct: 190 SRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIIS 249

Query: 233 GYGMLGEVDTAINLFEAMR--EDGVGYDPVSYIAILTACSHGGLVEKGKK---------- 280
                G  + A+ LF  M+  EDG+  D  ++  +LT C++     +G++          
Sbjct: 250 AEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANI 309

Query: 281 ---------------------YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319
                                Y  E+     +     +  M++   + G  ++A++L K 
Sbjct: 310 TKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQ 369

Query: 320 LP---VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQHCGYYILLSNMYAEA 373
           +    ++PD     ++L +C    + + G     H F+++    +     ++L +MYA+ 
Sbjct: 370 MQLNGIKPDCFSLSSMLSSCVSLSDSQKG--RELHNFIVRNTMEEEGILQVVLVDMYAKC 427

Query: 374 GKWDEASKV 382
           G  D A KV
Sbjct: 428 GSMDYAWKV 436


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  283 bits (725), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 136/417 (32%), Positives = 243/417 (58%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+  +  +A  +F  I++K++VSWN+M++ +++ R   +A+ L REM      PN ++
Sbjct: 171 MYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMS 230

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +VL AC     L+ G  +   ++   +  + F+ +AL  MY KCG L  A+ +F+ + 
Sbjct: 231 LVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMK 290

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D+V++N +I GY+Q     E++ LF +MR+     D ++ +G +SACA++ A+  GK+
Sbjct: 291 KKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQ 350

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +      +     ++V  +++D Y + G +D A ++F  +P K+  SWN +I      G+
Sbjct: 351 VEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQ 410

Query: 240 VDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
              A+ LF++M  +G    P  ++++ +L+AC H GLV++G++ F  M +   + P   H
Sbjct: 411 AQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEH 470

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y+CMVDL  RAG +E+A   +  +P +PD  I GALLGAC+   N+++     + L  L+
Sbjct: 471 YSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELE 530

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P + G Y++ S +YA   +WD+++++R LMK +   K PGCSW+    ++ +F   D
Sbjct: 531 PSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGD 587



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 176/340 (51%), Gaps = 9/340 (2%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANF--AQNRLELKALQLVREMPIHNEFPNSVTLTNVLP 66
           A AS  F NI +    S+N M+     A N+  L AL+    M      PN++T   +  
Sbjct: 77  AYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSL-ALEFYSRMKFLGLKPNNLTYPFLFI 135

Query: 67  ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVS 125
           AC+    +  G+  H  +IR+GL+ D  ++++L  MYA+CG +  A+ VF+ IS +D VS
Sbjct: 136 ACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVS 195

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           +N +I GYS+     E++ LF EM   G + + +S +  + AC  L  +K G  +    +
Sbjct: 196 WNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVV 255

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
              +  + F+ ++++  Y + G +  A +IFD +  KD  +WN +I GY   G  + AI 
Sbjct: 256 ENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIK 315

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY--ACMVDL 303
           LF+ MR      D ++ I IL+AC+  G ++ GK+   E+ A      +  Y    +VD+
Sbjct: 316 LFQDMRMSSTAPDQITLIGILSACASIGALDLGKQV--EIYASERGFQDDVYVGTALVDM 373

Query: 304 LGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             + G +++A ++   +P + + + W A++ A   +G  +
Sbjct: 374 YAKCGSLDNAFRVFYGMPNKNEVS-WNAMISALAFHGQAQ 412



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 174/389 (44%), Gaps = 68/389 (17%)

Query: 43  LQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL---NFDLFLTNAL 99
           LQ     P  N    S    ++L  C     ++  K+IHA+++   +   N  L+    L
Sbjct: 17  LQKPHSKPNPNRQALSDKFNSLLQQCLS---IKQLKQIHAQLLTNSIHKPNSFLYKIADL 73

Query: 100 TDM-YAKCGCLNLAQNVF--NISFRDEVSYNILIVGYSQT-SDCSESLSLFSEMRLLGMK 155
            D  YA         +VF  NI    E S+N++I G S   +  S +L  +S M+ LG+K
Sbjct: 74  KDFAYA---------SVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLK 124

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
            + +++     AC+NL A++ G+  H   IR+ L     V++S++  Y R G++  A K+
Sbjct: 125 PNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKV 184

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275
           FD +  KD  SWN++I GY  +     A+ LF  M E G   + +S +++L AC   G +
Sbjct: 185 FDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDL 244

Query: 276 EKG-----------------------------------KKYFDEMQADSVKPTEMHYACM 300
           + G                                   ++ FD M+    K  ++ +  M
Sbjct: 245 KLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMK----KKDKVTWNAM 300

Query: 301 VDLLGRAGLMEDAVKLIKNLPVE---PDANIWGALLGACRIYGNVELGA----WAAEHLF 353
           +    + G+ E+A+KL +++ +    PD      +L AC   G ++LG     +A+E  F
Sbjct: 301 ITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGF 360

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKV 382
                + G    L +MYA+ G  D A +V
Sbjct: 361 Q-DDVYVG--TALVDMYAKCGSLDNAFRV 386


>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 581

 Score =  283 bits (725), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 150/418 (35%), Positives = 239/418 (57%), Gaps = 5/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY+  + PA A  +  +      ++VSWN ++A + +  +  KALQ   +M       + 
Sbjct: 137 MYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDE 196

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           VTL NVL ACAR   ++ G   HA ++  G   + ++ ++L  MYAKCG +  A+ VFN 
Sbjct: 197 VTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNR 256

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  R+ V +  +I G +Q+    E++ LF +M++ G+K D  +    +S+C  + A+  G
Sbjct: 257 MPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLG 316

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + +H       L   L V NS++D Y++ G ++ A +IF  L  +D  +W  +I+G+ M 
Sbjct: 317 RYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMN 376

Query: 238 GEVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEM 295
           G    A++LF  M  ED V  + V ++ +LTACSHGGLVE+G  +F  M +  ++ P   
Sbjct: 377 GLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIE 436

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY CMVDLLGRA L+ +A + IK++PV PD  +W +LL ACR  G V L  +AAE +  L
Sbjct: 437 HYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQL 496

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +P+ CG ++LLSN+YA   +W + + VR  M +    K PGCS+++    + +F   D
Sbjct: 497 EPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFFAGD 554



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 130/277 (46%), Gaps = 4/277 (1%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           +L   + A AR   L  G + HA  ++  L  D F+ NAL +MY+ C     A+ V + +
Sbjct: 95  SLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSA 154

Query: 120 FR---DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            R   D VS+N +I GY +    +++L  F +M    ++ D V+ +  + ACA   A+K 
Sbjct: 155 PRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKV 214

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G   H + +      + ++ +S++  Y + G ++ A ++F+ +P ++   W ++I G   
Sbjct: 215 GSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQ 274

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G    A++LF  M+  GV  D  +   ++++C   G ++ G+          +      
Sbjct: 275 SGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSV 334

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
              ++D+  + G +  A ++   L  + D   W  ++
Sbjct: 335 KNSLIDMYSKCGDVNKAYQIFHGL-TKRDVFTWTVMI 370


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  283 bits (725), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 149/416 (35%), Positives = 236/416 (56%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  I  K+++ WNA+++  +      ++L L   M       N  T
Sbjct: 349 MYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTT 408

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L  VL + A    +    ++HA   + G   D  + N L D Y KC CL  A  VF    
Sbjct: 409 LAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHS 468

Query: 121 RDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            D + ++  +I   SQ     +++ LF EM   G++ D       ++ACA+L+A +QGK+
Sbjct: 469 SDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 528

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I++   T +F  N+++  Y + G I+ A+  F  LP K   SW+ +I G    G 
Sbjct: 529 VHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGH 588

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+++F  M ++ +  + ++  ++L AC+H GLV++ K YF  M +   +  TE HY+
Sbjct: 589 GKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYS 648

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLGRAG ++DA++L+ ++P E +A +WGALL A R++ + ELG  AAE LF+L+P+
Sbjct: 649 CMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPE 708

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G ++LL+N YA AG WDE +KVR+LMK  + KK P  SWV+ +D V  F+V D+
Sbjct: 709 KSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDK 764



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 166/340 (48%), Gaps = 8/340 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            Y+K   P  A  +F    +   VSW+++V  ++ N L  +AL   R M       N   
Sbjct: 46  FYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFA 105

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L  VL  CA    L  G ++HA  +  GL+ D+F+ NAL  MY   G ++ A+ VF+ + 
Sbjct: 106 LPIVLK-CAPDAGL--GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAA 162

Query: 121 RDE--VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           RD   VS+N ++  + +   CS+++ LF EM   G++ +   F   ++AC     ++ G+
Sbjct: 163 RDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGR 222

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++H + +R      +F AN+++D Y++ G I +A  +F  +P  D  SWN  I G  + G
Sbjct: 223 KVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHG 282

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAIL--TACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
               A+ L   M+  G+  +  +  +IL   A +  G    G++    M        +  
Sbjct: 283 HDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYI 342

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
              +VD+  + GL++DA K+ + +P   D  +W AL+  C
Sbjct: 343 GVALVDMYAKYGLLDDARKVFEWIP-RKDLLLWNALISGC 381



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 179/398 (44%), Gaps = 46/398 (11%)

Query: 1   MYAKSSRPAEASYLFHNIA-EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MY       EA  +F   A ++N VSWN M++ F +N     A++L  EM      PN  
Sbjct: 144 MYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEF 203

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
             + V+ AC     L  G+++HA ++R G + D+F  NAL DMY+K G +++A  VF  +
Sbjct: 204 GFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKV 263

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG- 177
              D VS+N  I G         +L L  +M+  G+  +V +    + ACA   A     
Sbjct: 264 PKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFAL 323

Query: 178 -KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            ++IHG  I+    +  ++  +++D Y + G +D A K+F+ +P KD   WN LI G   
Sbjct: 324 GRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSH 383

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTAC------------------------SH- 271
            G    +++LF  MR++G   +  +  A+L +                         SH 
Sbjct: 384 GGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHV 443

Query: 272 -GGLVEK---------GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL- 320
             GL++            K F+E  +D++    + +  M+  L +    EDA+KL   + 
Sbjct: 444 VNGLIDSYWKCNCLRYANKVFEEHSSDNI----IAFTSMITALSQCDHGEDAIKLFMEML 499

Query: 321 --PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
              +EPD  +  +LL AC      E G     HL   K
Sbjct: 500 RKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRK 537



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 10/155 (6%)

Query: 188 HLHTHLFVA-------NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H+H HL  +       N +L FY++      A ++FD  P     SW++L+  Y      
Sbjct: 25  HIHAHLLKSGLLHAFRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALP 84

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A+  F AMR  GV  +  +   +L      GL   G +      +  +         +
Sbjct: 85  REALAAFRAMRARGVRCNEFALPIVLKCAPDAGL---GVQVHAVAVSTGLSGDIFVANAL 141

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           V + G  G +++A ++      + +A  W  ++ A
Sbjct: 142 VAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSA 176


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  283 bits (725), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 147/397 (37%), Positives = 238/397 (59%), Gaps = 5/397 (1%)

Query: 27  NAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIR 86
           N+M+  +  +   L ++ +  +M  +  FP+S T   VL + A+      GK IH  II+
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 87  KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSL 145
            G   +++++ AL +MY  C  ++ A+ VF+ I  R+ VS+N LI GY+      + + +
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           F EM++ G K   V+ +G + ACA+L A+ QG+ I        L  ++FV  +++D Y +
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAK 290

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
            G +D A KIF  + VK+  +WN LI GY M G  ++A+  F  M  +    D V+++ +
Sbjct: 291 CGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGV 350

Query: 266 LTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           L AC H GLV +G+ YF  M+ +  ++P   HY CMVDLLGRAG +++A +LI+ + ++P
Sbjct: 351 LCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQP 410

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
           D  IW  LLGACRI+GN++LG +A + L  L+P +   Y+LL+N+YA   +WD+  +VRE
Sbjct: 411 DPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVRE 470

Query: 385 LMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFTPG 421
           +M  R  +K PGCS ++  + V +FVV++ +K   PG
Sbjct: 471 MMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIK---PG 504



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 5/235 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY   S  ++A  +F  I ++NIVSWNA++  +  NR+  K + + REM I    P  VT
Sbjct: 186 MYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVT 245

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  VL ACA    L  G+ I   I    L  ++F+  AL DMYAKCG ++ A+ +F  + 
Sbjct: 246 MVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMR 305

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++  ++N+LI GY+       +L  FS M +   K D V+F+G + AC +   + +G+ 
Sbjct: 306 VKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGR- 364

Query: 180 IHGVTIRKH--LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
            +  ++++   L   +     ++D   R+G +D A ++   + ++ D   W  L+
Sbjct: 365 TYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELL 419



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 114/237 (48%), Gaps = 1/237 (0%)

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           F D    N +I  Y+ ++    S+ ++++M   G+  D  +F   + + A L   + GK 
Sbjct: 104 FIDSDLCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKA 163

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+    ++++V+ ++++ Y     +  A ++FD +P ++  SWN LI GY     
Sbjct: 164 IHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRM 223

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
               I++F  M+  G     V+ + +L AC+H G + +G+   D +  + ++        
Sbjct: 224 FRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTA 283

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           ++D+  + G++++A K+ K + V+ +   W  L+    + G  E    A   + M K
Sbjct: 284 LIDMYAKCGVVDEAEKIFKAMRVK-NVYTWNVLISGYAMNGRGESALQAFSRMIMEK 339


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 158/422 (37%), Positives = 246/422 (58%), Gaps = 9/422 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY   SRP +A   F  I   N V   AM + + +N L   +L L R++ I +    +V 
Sbjct: 134 MYNHCSRPIDARKAFDEIPSPNPVIITAMASGYVRNNLVYPSLALFRKL-IASGSATAVD 192

Query: 61  LTNVL---PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL--AQNV 115
               L    A AR         +HA +++ GL+ D  + N + D YAK G  +L  A+ V
Sbjct: 193 EAAALVAFSASARIPDCGITSSLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKV 252

Query: 116 FNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAA 173
           F+   +D VS+N +I  Y+Q    +++L L+ +M  +   +K + V+    + ACA+   
Sbjct: 253 FDTMEKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGT 312

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           I+ GK IH   +R  L  +++V  S++D Y++ GR+++A K F  +  K+  SW+ +I G
Sbjct: 313 IQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITG 372

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKP 292
           YGM G    A+++F  M   G   + +++I++L ACSH GL++KG+ +++ M+    ++P
Sbjct: 373 YGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEP 432

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
              HY CMVDLLGRAG +++A  LIK + V+PDA IWGALL ACRI+ NVEL   +A+ L
Sbjct: 433 GVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRL 492

Query: 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVN 412
           F L   +CGYY+LLSN+YAEAG W +  ++R L+K+R  +K PG S V+ +     F V 
Sbjct: 493 FELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVG 552

Query: 413 DR 414
           D+
Sbjct: 553 DK 554


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 152/440 (34%), Positives = 240/440 (54%), Gaps = 35/440 (7%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF--PNSVTLTNVLPAC 68
           A  +F  I   N+  WN ++  F+Q+     A+ L  +M   +    P  +T  +V  A 
Sbjct: 48  AYLVFTQIRNPNLFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAY 107

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN----------- 117
           A+      G ++H R+I+ GL  D F+ N + +MY  CG L  AQ +F+           
Sbjct: 108 AQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWN 167

Query: 118 ---------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH 156
                                +  R+ VS+N +I GY +     E++ LFS M+  G+K 
Sbjct: 168 TMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKP 227

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
              + +  ++ACA L A++QG+ IH   ++ +   +  V  +I+D Y++ G ID A ++F
Sbjct: 228 SEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVF 287

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
              P K  + WN+LILG  M G  + A+ LF  +    +  D VS+I +LTAC+H G+V+
Sbjct: 288 KSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVD 347

Query: 277 KGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           + K YF  M +   ++P+  HY+CMVD+LGRAGL+E+A +LIK++PV PDA IWG+LL +
Sbjct: 348 RAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSS 407

Query: 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395
           CR YGN+E+   AA+ +  L P     +ILLSN+YA    ++EA + R  +K ++  K P
Sbjct: 408 CREYGNIEMAKQAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEP 467

Query: 396 GCSWVQTRDEVQDFVVNDRM 415
           GCS ++   EV +FV   R+
Sbjct: 468 GCSLIEVNGEVHEFVAGGRL 487



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 128/277 (46%), Gaps = 34/277 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQ-----------NRLELK-------- 41
           MY       EA  +F      ++V+WN M+   A+           +++ L+        
Sbjct: 141 MYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSM 200

Query: 42  ------------ALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
                       A++L   M      P+  T+ ++L ACA    LR G+ IH  I++   
Sbjct: 201 ISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNF 260

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILIVGYSQTSDCSESLSLFSE 148
             +  +  A+ DMY+KCG ++ A  VF  + +  +S +N LI+G + +   +E++ LFS+
Sbjct: 261 ALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSK 320

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH-LHTHLFVANSILDFYTRSG 207
           +    +K D VSF+G ++AC +   + + K+   +    + +   +   + ++D   R+G
Sbjct: 321 LESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAG 380

Query: 208 RIDLANKIFDCLPVK-DSASWNTLILGYGMLGEVDTA 243
            ++ A ++   +PV  D+  W +L+      G ++ A
Sbjct: 381 LLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMA 417



 Score = 39.3 bits (90), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR-SGRIDLANKIFDCLPVKDSASWN 228
           N  ++K  ++IH   I+  L      A+ +L F T  +G I+ A  +F  +   +   WN
Sbjct: 5   NCTSMKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWN 64

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKK 280
           T+I G+        AI+LF  M        P  ++Y ++  A +  GL  +G +
Sbjct: 65  TIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQ 118


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 150/416 (36%), Positives = 237/416 (56%), Gaps = 31/416 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y KS    +A   F  I +K+++ W+ M+A +AQ+    +A+++  +M      PN  T
Sbjct: 284 LYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFT 343

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS- 119
             +VL ACA    L  G +IH  +I+ GL+ D+F++NAL D+YAKCG +  +  +F  S 
Sbjct: 344 FASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESP 403

Query: 120 FRDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            R++V+ +N +IVG+ Q  D  ++L LF  M    ++   V++  A+ ACA+LAA++ G 
Sbjct: 404 HRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGL 463

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH +T++      + V N+++D Y + G I  A  +FD +  +D  SWN +I GY M G
Sbjct: 464 QIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHG 523

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
                                        AC++ GL+++G+ YF  M  D  ++P   HY
Sbjct: 524 ----------------------------LACANAGLLDQGQAYFTSMIQDHGIEPCIEHY 555

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMV LLGR G ++ AVKLI  +P +P   +W ALLGAC I+ ++ELG  +A+H+  ++P
Sbjct: 556 TCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEP 615

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           Q    ++LLSNMYA A +WD  + VR+ MK +  KK PG SW++++  V  F V D
Sbjct: 616 QDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGD 671



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 169/346 (48%), Gaps = 6/346 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY KS    +AS LF  + E+N +S+  ++  +A++   L+A++L   +       N   
Sbjct: 82  MYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFV 141

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T +L           G  IHA I + G   + F+  AL D Y+ CG +++A+ VF+ I 
Sbjct: 142 FTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGIL 201

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           ++D VS+  ++  +++     E+L LFS+MR++G K +  +F     AC  L A   GK 
Sbjct: 202 YKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKS 261

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  ++      L+V  ++LD YT+SG ID A   F+ +P KD   W+ +I  Y    +
Sbjct: 262 VHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQ 321

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ +F  MR+  V  +  ++ ++L AC+    +  G +    +    +         
Sbjct: 322 SKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNA 381

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
           ++D+  + G ME+++ L    P   D   W  +     I G+V+LG
Sbjct: 382 LMDVYAKCGRMENSMXLFAESPHRNDVTPWNTV-----IVGHVQLG 422



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 148/334 (44%), Gaps = 9/334 (2%)

Query: 27  NAMVANFAQNRLELKALQLVREMPIH---NEFPNSVTLTNVLPACARGHFLRPGKEIHAR 83
           N  +  F++    +++ +L +E   H   +EF NS    N L  C +      GK +H  
Sbjct: 5   NNFLIRFSRRGFSVQSAKLTQEFVGHVSPSEF-NSHAYANALQDCIQKDEPSRGKGLHCE 63

Query: 84  IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSES 142
           I+++G   DLF  N L +MY K   L  A  +F+ +  R+ +S+  LI GY+++    E+
Sbjct: 64  ILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEA 123

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
           + LF  +   G + +   F   +    ++   + G  IH    +    ++ FV  +++D 
Sbjct: 124 IELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDA 183

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y+  GR+D+A ++FD +  KD  SW  ++  +        A+ LF  MR  G   +  ++
Sbjct: 184 YSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTF 243

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
            ++  AC      + GK           +        ++DL  ++G ++DA    + +P 
Sbjct: 244 ASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIP- 302

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           + D   W  ++     Y   +    A E  F ++
Sbjct: 303 KKDVIPWSFMIAR---YAQSDQSKEAVEMFFQMR 333


>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
          Length = 446

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 147/399 (36%), Positives = 234/399 (58%), Gaps = 40/399 (10%)

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCG------ 107
           FP+ VTL++V+ ACA     R G+++HA ++++  L  D+ L NAL DMYAKCG      
Sbjct: 7   FPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEAR 66

Query: 108 CL-------------------------NLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSE 141
           C+                           AQ VF+ +  ++ +++N+LI  Y+Q  +  E
Sbjct: 67  CIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEE 126

Query: 142 SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH------THLFV 195
           ++ LF +++   +     ++   ++AC N+A ++ G++ H   +++         + +FV
Sbjct: 127 AIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFV 186

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            NS++D Y ++G ID   K+F+ +  +D+ SWN +I+GY   G    A++LFE M     
Sbjct: 187 GNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNE 246

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAV 314
             D V+ I +L+AC H GLV++G+++F  M  D  + P+  HY CMVDLLGRAG +++A 
Sbjct: 247 NPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAE 306

Query: 315 KLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374
           +LIK++P EPD+ +W +LLGACR++ NVELG   A  LF L P++ G Y+LLSNMYAE G
Sbjct: 307 ELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMG 366

Query: 375 KWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           KW +  +VR  MK R   K PGCSW++   ++  F+  D
Sbjct: 367 KWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARD 405



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 143/275 (52%), Gaps = 25/275 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAKS+   +A  +F  + EKN+++WN ++A +AQN  E +A++L  ++   + +P   T 
Sbjct: 87  YAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTY 146

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNF------DLFLTNALTDMYAKCGCLNLAQNV 115
            NVL AC     L+ G++ H  ++++G  F      D+F+ N+L DMY K G ++    V
Sbjct: 147 GNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKV 206

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F  ++ RD VS+N +IVGY+Q     ++L LF  M       D V+ +G +SAC +   +
Sbjct: 207 FERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLV 266

Query: 175 KQGK-------EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSAS 226
            +G+       E HG+T  +  +T       ++D   R+G +  A ++   +P + DS  
Sbjct: 267 DEGRRHFHFMTEDHGITPSRDHYT------CMVDLLGRAGHLKEAEELIKDMPTEPDSVL 320

Query: 227 WNTLILGYGMLGEVD----TAINLFEAMREDGVGY 257
           W +L+    +   V+    TA  LFE   E+   Y
Sbjct: 321 WASLLGACRLHKNVELGERTAGRLFELDPENSGPY 355



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 110/250 (44%), Gaps = 44/250 (17%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI-RKHLHTHLFVANSILDFYTRSG 207
           M   G   D V+    +SACA LAA ++G+++H   + R  L   + + N+++D Y + G
Sbjct: 1   MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 60

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
           R   A  IFD +P +   S  +++ GY     V+ A  +F  M E  V    +++  ++ 
Sbjct: 61  RTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNV----IAWNVLIA 116

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           A +  G  E+  + F +++ DS+ PT  HY                              
Sbjct: 117 AYAQNGEEEEAIRLFVQLKRDSIWPT--HYT----------------------------- 145

Query: 328 IWGALLGACRIYGNVELGAWAAEHL------FMLKPQHCGYY-ILLSNMYAEAGKWDEAS 380
            +G +L AC     ++LG  A  H+      F   P+   +    L +MY + G  D+ +
Sbjct: 146 -YGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGA 204

Query: 381 KVRELMKSRE 390
           KV E M +R+
Sbjct: 205 KVFERMAARD 214



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 1/117 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+    + + +F  +A ++ VSWNAM+  +AQN     AL L   M   NE P+SVT
Sbjct: 193 MYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVT 252

Query: 61  LTNVLPACARGHFLRPGKE-IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           +  VL AC     +  G+   H      G+         + D+  + G L  A+ + 
Sbjct: 253 MIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELI 309


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 147/446 (32%), Positives = 244/446 (54%), Gaps = 34/446 (7%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
           AK     +   L      ++++SW +++A +++     +A+   + M  H   P+ VT+ 
Sbjct: 184 AKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVI 243

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN----- 117
            VL ACA+   L  G+ +H  +  KG+     L  AL DMYAKCG    AQ VF+     
Sbjct: 244 AVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRG 303

Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                       +  RD +++N ++ GY  +    E+L LF  M
Sbjct: 304 PRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSM 363

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
           R   ++ D  + +  ++ACA+L A++QG+ +H    ++ +   +++  ++LD Y + GR+
Sbjct: 364 RRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRV 423

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           D A  +F  +  +D  +W  +I G    G    A+  F  MR DG   + VSYIA+LTAC
Sbjct: 424 DEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTAC 483

Query: 270 SHGGLVEKGKKYFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           SH  L+ +G+ YFDEM+   ++ P   HY CM+DLLGR+GL+++A+ L+K +P++P+A I
Sbjct: 484 SHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVI 543

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
           W ++L ACR++ +++L   AAEHL  L+P   G Y+ L N+Y ++ +W+ ASK+R LM+ 
Sbjct: 544 WASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEE 603

Query: 389 REAKKNPGCSWVQTRDEVQDFVVNDR 414
           R+ KK  G S +    +V  FVV+D+
Sbjct: 604 RQVKKTAGYSSITVAGQVHKFVVSDK 629



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 103/245 (42%), Gaps = 37/245 (15%)

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSF---MGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           SD      LF  MR  G++ D  +F       S+ +   ++     +H   +R  L +  
Sbjct: 82  SDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAA 141

Query: 194 -FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV-DT--------- 242
            FV+NS++  Y R G    A + FD + VKD+ +W  LI G   +G + DT         
Sbjct: 142 PFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPV 201

Query: 243 ---------------------AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
                                A+  F+ M   G+  D V+ IA+L+AC+    +E G+  
Sbjct: 202 RDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSL 261

Query: 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL-GACRIYG 340
              ++   +  +E     ++D+  + G    A ++   L   P    W A++ G C+ +G
Sbjct: 262 HLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCK-HG 320

Query: 341 NVELG 345
           +V++ 
Sbjct: 321 HVDVA 325



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  R  EA+ +F  + ++++ +W AM+A  A N +   AL+   +M      PNSV+
Sbjct: 416 MYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVS 475

Query: 61  LTNVLPACARGHFLRPGK----------EIHARIIRKGLNFDLFLTNALTD 101
              VL AC+    L  G+           IH +I   G   DL   + L D
Sbjct: 476 YIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLD 526


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 146/416 (35%), Positives = 233/416 (56%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  +   A  +    A K++VSW  M+A + Q   + KAL   R+M       + V 
Sbjct: 494 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 553

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           LTN + ACA    L+ G++IHA+    G + DL   NAL  +Y++CG +  +   F    
Sbjct: 554 LTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTE 613

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D +++N L+ G+ Q+ +  E+L +F  M   G+ ++  +F  A+ A +  A +KQGK+
Sbjct: 614 AGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ 673

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H V  +    +   V N+++  Y + G I  A K F  +  K+  SWN +I  Y   G 
Sbjct: 674 VHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGF 733

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++ F+ M    V  + V+ + +L+ACSH GLV+KG  YF+ M ++  + P   HY 
Sbjct: 734 GSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYV 793

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VD+L RAGL+  A + I+ +P++PDA +W  LL AC ++ N+E+G +AA HL  L+P+
Sbjct: 794 CVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPE 853

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y+LLSN+YA + KWD     R+ MK +  KK PG SW++ ++ +  F V D+
Sbjct: 854 DSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQ 909



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 193/403 (47%), Gaps = 37/403 (9%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + E+ I +WN M+   A   L  +   L   M   N  PN  T + VL AC  G  
Sbjct: 102 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 161

Query: 74  -LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
                ++IHARI+ +GL     + N L D+Y++ G ++LA+ VF+ +  +D  S+  +I 
Sbjct: 162 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 221

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           G S+    +E++ LF +M +LG+     +F   +SAC  + +++ G+++HG+ ++    +
Sbjct: 222 GLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSS 281

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
             +V N+++  Y   G +  A  IF  +  +D+ ++NTLI G    G  + A+ LF+ M 
Sbjct: 282 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 341

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFD---------------------------E 284
            DG+  D  +  +++ ACS  G + +G++                              E
Sbjct: 342 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 401

Query: 285 MQADSVKPTEMHYACMVDLLGRA-GLMED---AVKLIKNLPVE---PDANIWGALLGACR 337
              D    TE+    + +++  A GL++D   + ++ + + +E   P+   + ++L  C 
Sbjct: 402 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 461

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYI-LLSNMYAEAGKWDEA 379
             G++ELG      +     Q   Y   +L +MYA+ GK D A
Sbjct: 462 RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTA 504



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 163/314 (51%), Gaps = 1/314 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+++     A  +F  +  K+  SW AM++  ++N  E +A++L  +M +    P    
Sbjct: 191 LYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYA 250

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            ++VL AC +   L  G+++H  +++ G + D ++ NAL  +Y   G L  A+++F N+S
Sbjct: 251 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS 310

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V+YN LI G SQ     +++ LF  M L G++ D  +    + AC+    + +G++
Sbjct: 311 QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQ 370

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H  T +    ++  +  ++L+ Y +   I+ A   F    V++   WN +++ YG+L +
Sbjct: 371 LHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDD 430

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +  +  +F  M+ + +  +  +Y +IL  C   G +E G++   ++   + +      + 
Sbjct: 431 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSV 490

Query: 300 MVDLLGRAGLMEDA 313
           ++D+  + G ++ A
Sbjct: 491 LIDMYAKLGKLDTA 504



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 161/335 (48%), Gaps = 4/335 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A ++F N+++++ V++N ++   +Q     KA++L + M +    P+S TL +++ AC+ 
Sbjct: 302 AEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA 361

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
              L  G+++HA   + G   +  +  AL ++YAKC  +  A + F      + V +N++
Sbjct: 362 DGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVM 421

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           +V Y    D   S  +F +M++  +  +  ++   +  C  L  ++ G++IH   I+ + 
Sbjct: 422 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNF 481

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             + +V + ++D Y + G++D A  I      KD  SW T+I GY      D A+  F  
Sbjct: 482 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 541

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M + G+  D V     ++AC+    +++G++   +               +V L  R G 
Sbjct: 542 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGK 601

Query: 310 MEDAVKLIKNLPVEPDANI-WGALLGACRIYGNVE 343
           +E++    +    E   NI W AL+   +  GN E
Sbjct: 602 IEESYLAFEQ--TEAGDNIAWNALVSGFQQSGNNE 634



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 149/327 (45%), Gaps = 37/327 (11%)

Query: 56  PNSVTLTNVLPACARGH-FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
           PN  TL  +L  C + +  L  G+++H++I++ GL+ +  L+  L D Y   G L  A  
Sbjct: 42  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFK 101

Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC-ANLA 172
           VF+ +  R   ++N +I   +  +   E   LF  M    +  +  +F G + AC     
Sbjct: 102 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 161

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           A    ++IH   + + L     V N ++D Y+R+G +DLA ++FD L +KD +SW  +I 
Sbjct: 162 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 221

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK------------ 280
           G         AI LF  M   G+   P ++ ++L+AC     +E G++            
Sbjct: 222 GLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSS 281

Query: 281 -----------YF--------DEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL- 320
                      YF        + + ++  +   + Y  +++ L + G  E A++L K + 
Sbjct: 282 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 341

Query: 321 --PVEPDANIWGALLGACRIYGNVELG 345
              +EPD+N   +L+ AC   G +  G
Sbjct: 342 LDGLEPDSNTLASLVVACSADGTLFRG 368


>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
          Length = 493

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 150/418 (35%), Positives = 239/418 (57%), Gaps = 5/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY+  + PA A  +  +      ++VSWN ++A + +  +  KALQ   +M       + 
Sbjct: 49  MYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDE 108

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           VTL NVL ACAR   ++ G   HA ++  G   + ++ ++L  MYAKCG +  A+ VFN 
Sbjct: 109 VTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNR 168

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  R+ V +  +I G +Q+    E++ LF +M++ G+K D  +    +S+C  + A+  G
Sbjct: 169 MPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLG 228

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + +H       L   L V NS++D Y++ G ++ A +IF  L  +D  +W  +I+G+ M 
Sbjct: 229 RYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMN 288

Query: 238 GEVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEM 295
           G    A++LF  M  ED V  + V ++ +LTACSHGGLVE+G  +F  M +  ++ P   
Sbjct: 289 GLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIE 348

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY CMVDLLGRA L+ +A + IK++PV PD  +W +LL ACR  G V L  +AAE +  L
Sbjct: 349 HYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQL 408

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +P+ CG ++LLSN+YA   +W + + VR  M +    K PGCS+++    + +F   D
Sbjct: 409 EPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFFAGD 466



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 132/280 (47%), Gaps = 4/280 (1%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           ++ +L   + A AR   L  G + HA  ++  L  D F+ NAL +MY+ C     A+ V 
Sbjct: 4   DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 63

Query: 117 NISFR---DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           + + R   D VS+N +I GY +    +++L  F +M    ++ D V+ +  + ACA   A
Sbjct: 64  DSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGA 123

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           +K G   H + +      + ++ +S++  Y + G ++ A ++F+ +P ++   W ++I G
Sbjct: 124 MKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAG 183

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
               G    A++LF  M+  GV  D  +   ++++C   G ++ G+          +   
Sbjct: 184 CTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKE 243

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                 ++D+  + G +  A ++   L  + D   W  ++
Sbjct: 244 LSVKNSLIDMYSKCGDVNKAYQIFHGL-TKRDVFTWTVMI 282


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 161/421 (38%), Positives = 241/421 (57%), Gaps = 8/421 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +      A  +F    E+ I  WNA+    A      + L L  +M       +  T
Sbjct: 122 MYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFT 181

Query: 61  LTNVLPACARGHF----LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
            T VL AC         LR GKEIHA I+R G   ++ +   L D+YAK G ++ A +VF
Sbjct: 182 YTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVF 241

Query: 117 -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH--DVVSFMGAISACANLAA 173
             +  ++ VS++ +I  +++     ++L LF  M         + V+ +  + ACA LAA
Sbjct: 242 CAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAA 301

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           ++QGK IHG  +R+ L + L V N+++  Y R G + +  ++FD +  +D  SWN+LI  
Sbjct: 302 LEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISI 361

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKP 292
           YGM G    AI +FE M   GV    +S+I +L ACSH GLVE+GK  F+ M +   + P
Sbjct: 362 YGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHP 421

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
              HYACMVDLLGRA  + +A+KLI+++  EP   +WG+LLG+CRI+ NVEL   A+  L
Sbjct: 422 GMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVL 481

Query: 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVN 412
           F L+P++ G Y+LL+++YAEA  W EA  V +L+++R  +K PGCSW++ + +V  FV  
Sbjct: 482 FELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSV 541

Query: 413 D 413
           D
Sbjct: 542 D 542



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 164/375 (43%), Gaps = 45/375 (12%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P   T  +++ +CA+ + L  G ++H  ++  G + D FL   L +MY + G ++ A  V
Sbjct: 76  PTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKV 135

Query: 116 FNISFRDEVSY--NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA---- 169
           F+ + R+   Y  N L    +      E L L+ +M  +G   D  ++   + AC     
Sbjct: 136 FDET-RERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSEL 194

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
           ++  +++GKEIH   +R     ++ V  ++LD Y + G +  AN +F  +P K+  SW+ 
Sbjct: 195 SVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSA 254

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGK---KYFDE 284
           +I  +        A+ LF+ M  +     P  V+ + +L AC+    +E+GK    Y   
Sbjct: 255 MIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILR 314

Query: 285 MQADSVKPT-----EMHYAC-----------------------MVDLLGRAGLMEDAVKL 316
            Q DS+ P       M+  C                       ++ + G  G  + A+++
Sbjct: 315 RQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQI 374

Query: 317 IKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG--YYILLSNMYA 371
            +N+    V P    +  +LGAC   G VE G    E +      H G  +Y  + ++  
Sbjct: 375 FENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLG 434

Query: 372 EAGKWDEASKVRELM 386
            A +  EA K+ E M
Sbjct: 435 RANRLGEAIKLIEDM 449


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 147/446 (32%), Positives = 244/446 (54%), Gaps = 34/446 (7%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
           AK     +   L      ++++SW +++A +++     +A+   + M  H   P+ VT+ 
Sbjct: 184 AKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVI 243

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN----- 117
            VL ACA+   L  G+ +H  +  KG+     L  AL DMYAKCG    AQ VF+     
Sbjct: 244 AVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRG 303

Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                       +  RD +++N ++ GY  +    E+L LF  M
Sbjct: 304 PRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSM 363

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
           R   ++ D  + +  ++ACA+L A++QG+ +H    ++ +   +++  ++LD Y + GR+
Sbjct: 364 RRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRV 423

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           D A  +F  +  +D  +W  +I G    G    A+  F  MR DG   + VSYIA+LTAC
Sbjct: 424 DEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTAC 483

Query: 270 SHGGLVEKGKKYFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           SH  L+ +G+ YFDEM+   ++ P   HY CM+DLLGR+GL+++A+ L+K +P++P+A I
Sbjct: 484 SHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVI 543

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
           W ++L ACR++ +++L   AAEHL  L+P   G Y+ L N+Y ++ +W+ ASK+R LM+ 
Sbjct: 544 WASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEE 603

Query: 389 REAKKNPGCSWVQTRDEVQDFVVNDR 414
           R+ KK  G S +    +V  FVV+D+
Sbjct: 604 RQVKKTAGYSSITVAGQVHKFVVSDK 629



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 103/245 (42%), Gaps = 37/245 (15%)

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSF---MGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           SD      LF  MR  G++ D  +F       S+ +   ++     +H   +R  L +  
Sbjct: 82  SDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAA 141

Query: 194 -FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV-DT--------- 242
            FV+NS++  Y R G    A + FD + VKD+ +W  LI G   +G + DT         
Sbjct: 142 PFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPV 201

Query: 243 ---------------------AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
                                A+  F+ M   G+  D V+ IA+L+AC+    +E G+  
Sbjct: 202 RDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSL 261

Query: 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL-GACRIYG 340
              ++   +  +E     ++D+  + G    A ++   L   P    W A++ G C+ +G
Sbjct: 262 HLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCK-HG 320

Query: 341 NVELG 345
           +V++ 
Sbjct: 321 HVDVA 325



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  R  EA+ +F  + ++++ +W AM+A  A N +   AL+   +M      PNSV+
Sbjct: 416 MYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVS 475

Query: 61  LTNVLPACARGHFLRPGK----------EIHARIIRKGLNFDLFLTNALTD 101
              VL AC+    L  G+           IH +I   G   DL   + L D
Sbjct: 476 YIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLD 526


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 151/417 (36%), Positives = 234/417 (56%), Gaps = 2/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     ++  +F    +KN ++W+AM+  +AQ+    KAL+L   M      P+  T
Sbjct: 256 MYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFT 315

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL AC+    +  GK++H  +++ G    L++  AL DMYAK G    A+  FN + 
Sbjct: 316 LVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQ 375

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V +  +I GY Q  +  ++LSL+  M++ G+  + ++    + AC+NLAA  QG++
Sbjct: 376 QPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQ 435

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH  TI+  L   + + +++   Y + G ++  N +F  +P +D  SWN +I G    G 
Sbjct: 436 IHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGY 495

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LFE MR+     D V+++ +L+ACSH GLV+ G  YF  M  +  + P   HYA
Sbjct: 496 GKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYA 555

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+L RAG + +A + I++  ++    +W  LLGACR Y N ELGA+A E L  L  Q
Sbjct: 556 CMVDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQ 615

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
               Y+LLS +Y   G+ ++  +VR +MK R   K PGCSW++ +  V  FVV D+M
Sbjct: 616 ESSAYVLLSGIYTALGRPEDVERVRSMMKVRGVSKEPGCSWIELKSNVHVFVVGDQM 672



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 179/334 (53%), Gaps = 2/334 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+    EA  +F  + E+N V+W  M++ +A  RL  +A ++   M    E  N   
Sbjct: 155 MYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFA 214

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            T+VL A A   F+  GK+IH   ++ GL   L + NAL  MYAKCG L+ +  VF +S 
Sbjct: 215 FTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSN 274

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ ++++ +I GY+Q+ D  ++L LFS M   G+     + +G ++AC++  A+++GK+
Sbjct: 275 DKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQ 334

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++    + L++  +++D Y +SG  + A K F+ L   D   W ++I GY   GE
Sbjct: 335 VHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGE 394

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A++L+  M+ +G+  + ++  ++L ACS+    ++G++         +       + 
Sbjct: 395 NEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSA 454

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +  +  + G +E+   + + +P E D   W A++
Sbjct: 455 LSTMYAKCGNLEEGNIVFRRMP-ERDIISWNAMI 487



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 169/337 (50%), Gaps = 4/337 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKA--LQLVREMPIHNEFPNSV 59
           YAK     +A  +F  I  K+++SWN ++  ++Q      +  ++L + M   N  PN+ 
Sbjct: 53  YAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAH 112

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T + +  A +    +  G++ HA  I+    +D+F+ ++L +MY K G L  A+ VF+ +
Sbjct: 113 TFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRM 172

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+EV++  +I GY+      E+  +F  MR      +  +F   +SA A    +  GK
Sbjct: 173 PERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGK 232

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH + ++  L   L + N+++  Y + G +D + ++F+    K+S +W+ +I GY   G
Sbjct: 233 QIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSG 292

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
           +   A+ LF  M   G+     + + +L ACS    VE+GK+  + +     +       
Sbjct: 293 DSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMT 352

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            +VD+  ++G+ EDA K    L  +PD  +W +++  
Sbjct: 353 ALVDMYAKSGVTEDARKGFNYLQ-QPDLVLWTSMIAG 388



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 177/372 (47%), Gaps = 42/372 (11%)

Query: 49  MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD-LFLTNALTDMYAKCG 107
           MP+H   P +++  N L        L+ G+ +HA+II+   +   ++L N+L + YAKC 
Sbjct: 1   MPLH---PQNLSSFNSLVQFTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCC 57

Query: 108 CLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSES--LSLFSEMRLLGMKHDVVSFMGA 164
            L  A+ VF+ I  +D +S+N LI GYSQ      S  + LF  MR   +  +  +F G 
Sbjct: 58  HLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGI 117

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
            +A +NL++I  G++ H V I+      +FV +S+L+ Y ++G +  A ++FD +P ++ 
Sbjct: 118 FTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNE 177

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK---- 280
            +W T+I GY +      A  +FE MR +    +  ++ ++L+A +    V+ GK+    
Sbjct: 178 VTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCL 237

Query: 281 --------YFDEMQA------------DSVKPTEMH-------YACMVDLLGRAGLMEDA 313
                   +   + A            DS++  EM        ++ M+    ++G    A
Sbjct: 238 AVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKA 297

Query: 314 VKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL-LSNM 369
           +KL   +    + P       +L AC     VE G     +L  L  +   Y +  L +M
Sbjct: 298 LKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDM 357

Query: 370 YAEAGKWDEASK 381
           YA++G  ++A K
Sbjct: 358 YAKSGVTEDARK 369


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 152/437 (34%), Positives = 243/437 (55%), Gaps = 33/437 (7%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF     +++VSWN+++  + +  L  +A  L  +M   N  P+ VT+  V+ A A+
Sbjct: 209 ARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQ 268

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC------------------------ 106
              L  G+++H  I   GLN  + L NAL DMY KC                        
Sbjct: 269 LENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTM 328

Query: 107 -------GCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
                  G L  A  +FN +  +D V +N LI G+ Q     E+L+LF EM+   +  D 
Sbjct: 329 VIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDK 388

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
           ++ +  +SAC+ L A+  G  +H    + +L  ++ +  +++D Y + G I  A ++F+ 
Sbjct: 389 ITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEE 448

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P ++S +W  +I G  + G+   AI+ F  M   G+  D +++I +L+AC HGGLV++G
Sbjct: 449 MPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQG 508

Query: 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
           + YF +M +   + P   HY+C+VDLLGRAG +E+A +LI+++P EPDA +WGAL    R
Sbjct: 509 RDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSR 568

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           I+GNV +G  AA  L  L P   G Y+LL+NMY +A  W++A KVR++M+ R  +K PGC
Sbjct: 569 IHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGC 628

Query: 398 SWVQTRDEVQDFVVNDR 414
           S ++    V DF++ D+
Sbjct: 629 SSIEMNGLVYDFIIRDK 645



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 173/383 (45%), Gaps = 43/383 (11%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPNSVTLTNVLPACARGH 72
           + +N A  N+ SWN  +  + ++   + A+ L R M    +  P++ T   +   CA   
Sbjct: 110 ILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFS 169

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNILIV 131
                 EI   +I+ G + DLF+ NA+  +   CG L  A+ +F+ S  RD VS+N +I 
Sbjct: 170 LSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIIN 229

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           GY +     E+  L+ +M  L +  D V+ +G +SA A L  +  G+++H       L+ 
Sbjct: 230 GYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNL 289

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            + +AN+++D Y +   I+ A  +F+ +  K   SW T+++GY   G +++A+ LF  M 
Sbjct: 290 TVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMP 349

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
           E     D V + A++         ++    F EMQA SV P                   
Sbjct: 350 EK----DVVLWNALIGGFVQAKRSKEALALFHEMQASSVAP------------------- 386

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQHCGYYILLSN 368
           D + ++               L AC   G +++G W   H ++ K     +      L +
Sbjct: 387 DKITVVN-------------CLSACSQLGALDVGIWM--HHYVDKHNLTMNVALGTALVD 431

Query: 369 MYAEAGKWDEASKVRELMKSREA 391
           MYA+ G   +A +V E M  R +
Sbjct: 432 MYAKCGNIKKAIQVFEEMPGRNS 454



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 148/333 (44%), Gaps = 47/333 (14%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVS-------------------------------WNAM 29
           MY K      A  LF N+ +K +VS                               WNA+
Sbjct: 300 MYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNAL 359

Query: 30  VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
           +  F Q +   +AL L  EM   +  P+ +T+ N L AC++   L  G  +H  + +  L
Sbjct: 360 IGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNL 419

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
             ++ L  AL DMYAKCG +  A  VF  +  R+ +++  +I G +       ++S FSE
Sbjct: 420 TMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSE 479

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKE-IHGVTIRKHLHTHLFVANSILDFYTRSG 207
           M  +G+  D ++F+G +SAC +   + QG++  + +T +  +   L   + ++D   R+G
Sbjct: 480 MISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAG 539

Query: 208 RIDLANKIFDCLPVK-DSASWNTLILGYGMLGEVD----TAINLFEAMREDGVGYDPVSY 262
            ++ A ++   +P + D+  W  L  G  + G V      A  L E    DG  Y     
Sbjct: 540 FLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIY----- 594

Query: 263 IAILTACSHG--GLVEKGKKYFDEMQADSVKPT 293
             +L A  +G   + E+ +K    M+   V+ T
Sbjct: 595 --VLLANMYGDANMWEQARKVRKMMEERGVEKT 625



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 141/340 (41%), Gaps = 61/340 (17%)

Query: 47  REMPIHNEFP----------NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLT 96
           R +P H + P           S  L ++L AC     +   KEIHA++I  GL  D F  
Sbjct: 33  RSLPHHKDKPTNWNASHVLIQSNPLLSLLEACTS---MAKMKEIHAQMISTGLISDGF-- 87

Query: 97  NALTDMYAKCG---------CLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
            AL+ + A C          C  +  N  N++     S+N+ I GY ++ +   ++ L+ 
Sbjct: 88  -ALSRLVAFCAISEWRNLDYCDKILNNAANLNV---FSWNMAIRGYVESENPINAVLLYR 143

Query: 148 EMRLLGMK-HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
            M   G    D  ++      CA  +      EI G  I+    + LFV N+I+      
Sbjct: 144 NMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSC 203

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           G +  A K+FD   V+D  SWN++I GY   G  D A +L+  M E  V  D V+ I ++
Sbjct: 204 GELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVV 263

Query: 267 TACSHGGLVEKGKKYFDEMQ-------------------------------ADSVKPTEM 295
           +A +    +  G+K    ++                                +  K T +
Sbjct: 264 SASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVV 323

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            +  MV    + GL+E AV+L   +P E D  +W AL+G 
Sbjct: 324 SWTTMVIGYAKFGLLESAVRLFNEMP-EKDVVLWNALIGG 362


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 153/414 (36%), Positives = 237/414 (57%), Gaps = 4/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  I   +++ W+ +++ +AQ+    +A ++   M      PN  +
Sbjct: 293 MYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFS 352

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L+ VL ACA   FL  G++IH   I+ G   +LF+ NAL DMYAKC  +  +  +F+ S 
Sbjct: 353 LSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFS-SL 411

Query: 121 RD--EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           +D  EVS+N +IVGY Q+    ++LS+F EMR   M    V+F   + ACAN ++IK   
Sbjct: 412 QDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAV 471

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH +  +   +    V NS++D Y + G I  A K+F+ +   D  SWN++I  Y + G
Sbjct: 472 QIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHG 531

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A+ LF+ M +  +  + V+++++L+ C   GLV +G   F+ M  D  +KP+  HY
Sbjct: 532 RATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHY 591

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C+V LLGRAG + DA+K I ++P  P   +W ALL +C ++ NV LG +AAE +  ++P
Sbjct: 592 TCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEP 651

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
                Y+LLSNMYA AG  DE +  R+ M++   KK  G SWV+ + EV  F V
Sbjct: 652 HDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSV 705



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 156/337 (46%), Gaps = 1/337 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK    A A  LF  + E+N VS+  ++  +A      +AL+L R +       N   L
Sbjct: 92  YAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVL 151

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T +L              IHA   + G + + F+  AL D Y+ CG +  A+ VF+ I  
Sbjct: 152 TTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVG 211

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D V++  ++  YS+      +L+ FS+MR+ G K +      A+ A   L++   GK I
Sbjct: 212 KDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGI 271

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG +++    T   V  ++LD Y + G I+ A+ IF+ +P  D   W+ LI  Y    + 
Sbjct: 272 HGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQN 331

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           + A  +F  M    V  +  S   +L AC++   +E G++  +       +        +
Sbjct: 332 EQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNAL 391

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
           +D+  +   ME+++++  +L    + +    ++G C+
Sbjct: 392 MDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQ 428



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 129/273 (47%), Gaps = 15/273 (5%)

Query: 69  ARGHFLRPGKEIHARIIRKG--LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVS 125
           ARG   R G+ +HAR++++G     D F  N L + YAK G L  A+ +F+ +  R+ VS
Sbjct: 57  ARGD-ARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVS 115

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAIKQGKEIHGV 183
           +  L+ GY+   +  E+L LF  ++  G  + H V++ +  +    +   +  G  IH  
Sbjct: 116 FVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACG--IHAC 173

Query: 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
             +     + FV  +++D Y+  G +  A  +FD +  KD+ +W  ++  Y      + A
Sbjct: 174 ACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYA 233

Query: 244 INLFEAMREDGVGYDPVSYIAILTA--CSHGGLVEKGKKYFDEMQADSVKPTEMHY-ACM 300
           +N F  MR  G   +P    + L A  C    L+ KG          ++  TE H    +
Sbjct: 234 LNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKG---IHGCSVKTLYDTEPHVGGAL 290

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +D+  + G +EDA  + + +P   D  +W  L+
Sbjct: 291 LDMYAKCGDIEDAHAIFEMIP-HDDVILWSFLI 322


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 163/423 (38%), Positives = 243/423 (57%), Gaps = 12/423 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +      A  +F    E+ I  WNA+    A      + L L  +M       +  T
Sbjct: 122 MYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFT 181

Query: 61  LTNVLPACARGHF----LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
            T VL AC         L+ GKEIHA I+R G   ++ +   L D+YAK G ++ A +VF
Sbjct: 182 YTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVF 241

Query: 117 -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV----SFMGAISACANL 171
             +  ++ VS++ +I  +++     ++L LF  M L    HD V    + +  + ACA L
Sbjct: 242 CAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEA--HDSVPNSVTMVNVLQACAGL 299

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
           AA++QGK IHG  +R+ L + L V N+++  Y R G I +  ++FD +  +D  SWN+LI
Sbjct: 300 AALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLI 359

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SV 290
             YGM G    AI +FE M   G     +S+I +L ACSH GLVE+GK  F+ M +   +
Sbjct: 360 SIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRI 419

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
            P   HYACMVDLLGRA  +++A+KLI+++  EP   +WG+LLG+CRI+ NVEL   A+ 
Sbjct: 420 HPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERAST 479

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
            LF L+P++ G Y+LL+++YAEA  W EA  V +L+++R  +K PGCSW++ + +V  FV
Sbjct: 480 LLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFV 539

Query: 411 VND 413
             D
Sbjct: 540 SVD 542



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 168/375 (44%), Gaps = 45/375 (12%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P   T  +++ +CA+ + L  G ++H R++  G + D FL   L +MY + G ++ A+ V
Sbjct: 76  PTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKV 135

Query: 116 FNISFRDEVSY--NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA---- 169
           F+ + R+   Y  N L    +      E L L+ +M  +G+  D  ++   + AC     
Sbjct: 136 FDET-RERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSEL 194

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
           +++ +++GKEIH   +R     ++ V  ++LD Y + G +  AN +F  +P K+  SW+ 
Sbjct: 195 SVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSA 254

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGK---KYFDE 284
           +I  +        A+ LF+ M  +     P  V+ + +L AC+    +E+GK    Y   
Sbjct: 255 MIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILR 314

Query: 285 MQADSVKPT-----EMHYAC-----------------------MVDLLGRAGLMEDAVKL 316
              DS+ P       M+  C                       ++ + G  G  + A+++
Sbjct: 315 RGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQI 374

Query: 317 IKNLPVE---PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG--YYILLSNMYA 371
            +N+  +   P    +  +LGAC   G VE G    E +      H G  +Y  + ++  
Sbjct: 375 FENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLG 434

Query: 372 EAGKWDEASKVRELM 386
            A + DEA K+ E M
Sbjct: 435 RANRLDEAIKLIEDM 449


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 237/414 (57%), Gaps = 2/414 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A ++F  +  K++ SWNA++   AQN   +KAL    EM      P+  ++
Sbjct: 461 YAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSI 520

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            ++L AC R   L+ GKEIH  ++R GL  + F+  +L  +Y  C      +  F  +  
Sbjct: 521 VSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGD 580

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ V +N ++ GYSQ    +E+LSLF +M   G++ D ++    + AC+ L+A+  GKE+
Sbjct: 581 KNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEV 640

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++  L    FVA S++D Y +SG +  + +IF+ L  K+ ASWN +I G+G+ G+ 
Sbjct: 641 HCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQG 700

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYAC 299
           + A+ LFE M+      D  +++ +L AC H GLV +G  Y  +MQ    ++P   HYAC
Sbjct: 701 NKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYAC 760

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           ++D+LGRAG + +A+  I  +P EPDA IW +LL +   Y ++E+G   AE L  L+   
Sbjct: 761 VIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANK 820

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
              YILLSN+YA AGKWD    VR+ MK    +K+ GCSW++ R +V  F+  +
Sbjct: 821 ADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGE 874



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 196/432 (45%), Gaps = 44/432 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE--FPNS 58
           +Y K     EA  LF  + E+N++SWN+++  F++N   L+A +  R +    +   P+ 
Sbjct: 254 LYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDV 313

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
            T+  +LP C+    +  G  IH   ++ GL  +L + NAL DMY+KCGCL+ A  +F  
Sbjct: 314 ATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRK 373

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAIK 175
           I  +  VS+N +I  YS+     E+  L  +M +    M+ + V+ +  + AC   + + 
Sbjct: 374 IENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELL 433

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
             + +HG ++R        + N+ +  Y + G +  A  +F  +  K  +SWN +I G+ 
Sbjct: 434 SLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHA 493

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD-------EMQA- 287
             G+   A++ +  M   G+  D  S +++L AC   GL++ GK+          EM + 
Sbjct: 494 QNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSF 553

Query: 288 DSVKPTEMHYACMVDLLGRA-----------------------GLMEDAVKLIKNL---P 321
            +V    +++ C     GR                         L  +A+ L + +    
Sbjct: 554 VAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDG 613

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDE 378
           +EPD     ++LGAC     + LG     H F LK        +   L +MYA++G    
Sbjct: 614 LEPDEIAIASILGACSQLSALGLGKEV--HCFALKNSLMEDNFVACSLMDMYAKSGFLGH 671

Query: 379 ASKVRELMKSRE 390
           + ++   +  +E
Sbjct: 672 SQRIFNRLNGKE 683



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 139/275 (50%), Gaps = 6/275 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MY+    P E+  +F  +  KN+  WNA+V+ + +N L  +A+    E+    EF P++ 
Sbjct: 152 MYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNF 211

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   ++ AC     +  GK +H   ++ GL  DLF+ NA+  +Y KCG L+ A  +F+ +
Sbjct: 212 TFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKM 271

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL--GMKHDVVSFMGAISACANLAAIKQ 176
             ++ +S+N LI G+S+     E+   F  +     G+  DV + +  +  C+    +  
Sbjct: 272 PEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDV 331

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G  IHG+ ++  L   L V N+++D Y++ G +  A  +F  +  K   SWN++I  Y  
Sbjct: 332 GMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSR 391

Query: 237 LGEVDTAINLFEA--MREDGVGYDPVSYIAILTAC 269
            G V    +L     M E+ +  + V+ + +L AC
Sbjct: 392 EGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 121/230 (52%), Gaps = 3/230 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y   S+P      F  + +KN V WNAM++ ++QN L  +AL L R+M      P+ + 
Sbjct: 561 LYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIA 620

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + ++L AC++   L  GKE+H   ++  L  D F+  +L DMYAK G L  +Q +FN ++
Sbjct: 621 IASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLN 680

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
            ++  S+N++I G+      ++++ LF +M+    + D  +F+G + AC +   + +G  
Sbjct: 681 GKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLN 740

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASW 227
            +  +     L   L     ++D   R+GR++ A    + +P + D+  W
Sbjct: 741 YLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIW 790



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 134/281 (47%), Gaps = 14/281 (4%)

Query: 64  VLPACARGHFLRPGKEIHARI-IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           +L  C +   +  G+++   + +    + D  L   L  MY+ CG    ++ VF+ +  +
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +   +N L+ GY +     E++  F E+  +   + D  +F   I AC     I  GK +
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV 232

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG+ ++  L   LFV N+++  Y + G +D A ++FD +P ++  SWN+LI G+   G  
Sbjct: 233 HGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFW 292

Query: 241 DTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH-- 296
             A   F ++ E G G  P   + + +L  CS  G V+ G      +   +VK   +H  
Sbjct: 293 LEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMV----IHGMAVKLGLVHEL 348

Query: 297 YAC--MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
             C  ++D+  + G + +A  L + +  +   + W +++GA
Sbjct: 349 MVCNALIDMYSKCGCLSEAAILFRKIENKSVVS-WNSMIGA 388


>gi|125550837|gb|EAY96546.1| hypothetical protein OsI_18451 [Oryza sativa Indica Group]
          Length = 591

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 151/416 (36%), Positives = 240/416 (57%), Gaps = 11/416 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +   PA A  +FH +AEKN+++W AM++  A+  L  ++  L  +M I     N+ T 
Sbjct: 168 YFECGSPASAERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQM-IRTVDANNATY 226

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR 121
           +  L ACAR    R G+++H  +++ G   DL + + L D+Y+KCG +  A  VF  S R
Sbjct: 227 SCTLLACARSLAAREGQQVHGLVVKAGFEADLHVESGLMDVYSKCGLMEDALTVFR-SCR 285

Query: 122 --DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD---VVSFMGAISACANLAAIKQ 176
             DEV   +++VG++Q     ++  LF+EM   G + D   V + +GA  A A  A    
Sbjct: 286 EPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSTVLGAFGASAPFA---L 342

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK+IH + I++    + +V N +++ Y++ G +  + ++FD +P K+S SWN++I  +  
Sbjct: 343 GKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVQVFDEMPSKNSVSWNSIIAAFAR 402

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G       LFE+M+ DG     V+++++L ACSH G  +KG +  + M +   V P   
Sbjct: 403 HGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRME 462

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYAC+VD+LGRAGL++DA   I++ P    A +W AL+GAC  +GN E+G  AAE L +L
Sbjct: 463 HYACVVDMLGRAGLLDDAKSFIEDGPFTDSALLWQALMGACSFHGNSEVGKHAAEKLLLL 522

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
            P     Y+LLSN+Y+  G+WD+ +KV + M     +K+ G SW++   EV  FVV
Sbjct: 523 DPSCTAAYVLLSNIYSSEGRWDDRAKVMKRMSEMGLRKDTGKSWIELEKEVHSFVV 578



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 164/349 (46%), Gaps = 17/349 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSV 59
           MYA+  R  +A+ +F  +  ++ VSWN+++   A +R    AL L R M   +    +  
Sbjct: 66  MYARCGRREDAARVFDEMRVRDAVSWNSLI---AASRGAGDALALFRRMLRSDARACDRA 122

Query: 60  TLTNVLPACAR--GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           T T VL  CAR     L     +H  ++  G   ++ + NAL   Y +CG    A+ VF+
Sbjct: 123 TFTTVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFH 182

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            ++ ++ +++  +I G ++     ES SLF +M +  +  +  ++   + ACA   A ++
Sbjct: 183 GMAEKNVITWTAMISGMARAELYKESFSLFGQM-IRTVDANNATYSCTLLACARSLAARE 241

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+++HG+ ++      L V + ++D Y++ G ++ A  +F      D      +++G+  
Sbjct: 242 GQQVHGLVVKAGFEADLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQ 301

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT--E 294
            G  + A  LF  M   G   D  +   +L A         GK    ++ A  +K     
Sbjct: 302 NGLEEKAFELFAEMVGAGNEIDENTVSTVLGAFGASAPFALGK----QIHALVIKRCFGV 357

Query: 295 MHYAC--MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
             Y C  +V++  + G + ++V++   +P +   + W +++ A   +G+
Sbjct: 358 NTYVCNGLVNMYSKCGELRESVQVFDEMPSKNSVS-WNSIIAAFARHGH 405



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 15/240 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K     +A  +F +  E + V    ++  FAQN LE KA +L  EM       +  T
Sbjct: 267 VYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENT 326

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++ VL A         GK+IHA +I++    + ++ N L +MY+KCG L  +  VF+ + 
Sbjct: 327 VSTVLGAFGASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVQVFDEMP 386

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N +I  +++    SE   LF  M+  G K   V+F+  + AC+++ + K+G E
Sbjct: 387 SKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLE 446

Query: 180 I-------HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA-SWNTLI 231
           I       +GV  R   +        ++D   R+G +D A    +  P  DSA  W  L+
Sbjct: 447 ILNSMSSQYGVLPRMEHYA------CVVDMLGRAGLLDDAKSFIEDGPFTDSALLWQALM 500



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 123/284 (43%), Gaps = 20/284 (7%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLT-----------NALTDMYAK 105
           N    + +L +C R   LR G  +HA +++   +F L  +           NAL  MYA+
Sbjct: 10  NYARFSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNALVSMYAR 69

Query: 106 CGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMG 163
           CG    A  VF+ +  RD VS+N LI       D   +L+LF  M R      D  +F  
Sbjct: 70  CGRREDAARVFDEMRVRDAVSWNSLIAASRGAGD---ALALFRRMLRSDARACDRATFTT 126

Query: 164 AISACA--NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
            +S CA    A++     +HG+ +       + V N+++  Y   G    A ++F  +  
Sbjct: 127 VLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAE 186

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
           K+  +W  +I G         + +LF  M    V  +  +Y   L AC+      +G++ 
Sbjct: 187 KNVITWTAMISGMARAELYKESFSLFGQMIRT-VDANNATYSCTLLACARSLAAREGQQV 245

Query: 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD 325
              +     +      + ++D+  + GLMEDA+ + ++   EPD
Sbjct: 246 HGLVVKAGFEADLHVESGLMDVYSKCGLMEDALTVFRSCR-EPD 288


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 148/416 (35%), Positives = 240/416 (57%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK  +  EA  +F  +  +++V W  M+   AQN    +A+ + R+M       + V 
Sbjct: 149 LYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVV 208

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  ++ AC      + G  IH  +IRK +  D+ +  +L DMYAK G L LA  VF  + 
Sbjct: 209 MLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRML 268

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           +++ +S++ LI G++Q      +L L  +M+  G K D VS +  + AC+ +  +K GK 
Sbjct: 269 YKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKS 328

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  +R+ LH     + +++D Y++ G +  A  +FD +  +DS SWN +I  YG+ G 
Sbjct: 329 VHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGS 387

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A++LF  MRE  V  D  ++ ++L+A SH GLVEKG+ +F  M  +  ++P+E HYA
Sbjct: 388 GEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYA 447

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLL RAG +E+A +LI+++  EP   IW ALL  C  +G   +G  AA+ +  L P 
Sbjct: 448 CMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPD 507

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G Y L+SN +A A +WDE ++VR++MK    KK PG S ++   ++  F++ D+
Sbjct: 508 DPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDK 563



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 184/378 (48%), Gaps = 23/378 (6%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+      A  +F    +  + +WNAM+  +++     +AL L   M      P+S T 
Sbjct: 49  YARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTY 108

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T VL AC R   LR G+E   + + +G   D+F+  A+ ++YAKCG ++ A  VF+ +  
Sbjct: 109 TVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGR 168

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD V +  +I G +Q     E++ ++ +M    ++ D V  +G I AC  L   K G  I
Sbjct: 169 RDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSI 228

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  IRK +   + V  S++D Y ++G ++LA+ +F  +  K+  SW+ LI G+   G  
Sbjct: 229 HGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFA 288

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC- 299
             A+ L   M+  G   D VS +++L ACS  G ++ GK     +         +H+ C 
Sbjct: 289 GNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYI------VRRLHFDCV 342

Query: 300 ----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM- 354
               ++D+  + G +  A  +   +    D+  W A++ +  I+G+ E     A  LF+ 
Sbjct: 343 SSTAVIDMYSKCGSLSFARTVFDQISFR-DSISWNAIIASYGIHGSGE----EALSLFLQ 397

Query: 355 -----LKPQHCGYYILLS 367
                +KP H  +  LLS
Sbjct: 398 MRETNVKPDHATFASLLS 415



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 126/257 (49%), Gaps = 4/257 (1%)

Query: 79  EIHARIIRKGLNFDLFLTNA-LTDMYAKCGCLNLAQNVFNISFRDEV-SYNILIVGYSQT 136
           +IHA +I  G+ F    +NA L   YA+ G +  A+ VF+ S +  V ++N +I+ YS+ 
Sbjct: 25  KIHALMILTGI-FGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRR 83

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               E+LSL+  M   G++ D  ++   + AC     ++ G+E     + +     +FV 
Sbjct: 84  GAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVG 143

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
            ++L+ Y + G++D A ++FD +  +D   W T+I G    G+   A++++  M +  V 
Sbjct: 144 AAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVE 203

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            D V  + ++ AC+  G  + G      M    +    +    +VD+  + G +E A  +
Sbjct: 204 GDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCV 263

Query: 317 IKNLPVEPDANIWGALL 333
            + + +  +   W AL+
Sbjct: 264 FRRM-LYKNVISWSALI 279


>gi|356504050|ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Glycine max]
          Length = 753

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 145/407 (35%), Positives = 240/407 (58%), Gaps = 8/407 (1%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + E+N+V+W A+++  AQN      L+L  +M   +  PNS+T  + L AC+    
Sbjct: 45  VFDEMLERNVVTWTAVISGLAQNEFYEDGLRLFDQMRRGSVSPNSLTYLSALMACSGLQA 104

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVG 132
           L  G++IH  + + G+  DL + +AL D+Y+KCG L  A  +F  +   D+VS  +++V 
Sbjct: 105 LLEGRKIHGLLWKLGMQSDLCIESALMDLYSKCGSLEEAWEIFESAEELDDVSLTVILVA 164

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHD---VVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           + Q     E++ +F  M  LG++ D   V + +G      +L     GK+IH + I+K+ 
Sbjct: 165 FMQNGLEEEAIQIFMRMVKLGIEVDPNMVSAILGVFGVGTSLTL---GKQIHSLIIKKNF 221

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             +LFV+N +++ Y++ G +  + ++F  +  K+S SWN++I  Y   G+   A+  ++ 
Sbjct: 222 IQNLFVSNGLINMYSKCGDLYDSLQVFHEMTQKNSVSWNSVIAAYARYGDGFRALQFYDD 281

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAG 308
           MR +G+    V+++++L ACSH GLVEKG ++ + M  D  + P   HYAC+VD+LGRAG
Sbjct: 282 MRVEGIALTDVTFLSLLHACSHAGLVEKGMEFLESMTRDHGLSPRSEHYACVVDMLGRAG 341

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
           L+++A K I+ LP  P   +W ALLGAC I+G+ E+G +AA  LF+  P     Y+L++N
Sbjct: 342 LLKEAKKFIEGLPENPGVLVWQALLGACSIHGDSEMGKYAANQLFLATPDSPAPYVLMAN 401

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           +Y+  GKW E ++  + MK     K  G SWV+   +V  FVV D+M
Sbjct: 402 IYSSEGKWKERARSIKKMKEMGVAKEVGISWVEIEKKVNSFVVGDKM 448



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 8/148 (5%)

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y++ G++  A K+FD +PVKD+ SWN +I G+    + DT   +F+ M E  V    V++
Sbjct: 2   YSKCGKLQDAIKLFDHMPVKDTVSWNAIISGFLRNRDCDTGRQVFDEMLERNV----VTW 57

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY-ACMVDLLGRAGLMEDAV--KLIKN 319
            A+++  +     E G + FD+M+  SV P  + Y + ++   G   L+E      L+  
Sbjct: 58  TAVISGLAQNEFYEDGLRLFDQMRRGSVSPNSLTYLSALMACSGLQALLEGRKIHGLLWK 117

Query: 320 LPVEPDANIWGALLGACRIYGNVELGAW 347
           L ++ D  I  AL+      G++E  AW
Sbjct: 118 LGMQSDLCIESALMDLYSKCGSLE-EAW 144



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 1/115 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     ++  +FH + +KN VSWN+++A +A+     +ALQ   +M +       VT
Sbjct: 234 MYSKCGDLYDSLQVFHEMTQKNSVSWNSVIAAYARYGDGFRALQFYDDMRVEGIALTDVT 293

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQN 114
             ++L AC+    +  G E    + R  GL+        + DM  + G L  A+ 
Sbjct: 294 FLSLLHACSHAGLVEKGMEFLESMTRDHGLSPRSEHYACVVDMLGRAGLLKEAKK 348


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 149/415 (35%), Positives = 238/415 (57%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A  +F +I +KN  SW A ++ +       +A+ + R +      P+S +
Sbjct: 152 LYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFS 211

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL AC R   LR G+ I   I   G+  ++F+  AL D Y KCG +  A++VF+ + 
Sbjct: 212 LVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGML 271

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS++ +I GY+      E+L LF +M   G+K D  + +G + +CA L A++ G  
Sbjct: 272 EKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDW 331

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
              +        +  +  +++D Y + GR+D A ++F  +  KD   WN  I G  M G 
Sbjct: 332 ASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGH 391

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
           V  A+ LF  M + G+  D  +++ +L AC+H GLVE+G++YF+ M+   ++ P   HY 
Sbjct: 392 VKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYG 451

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAG +++A +LIK++P+E +A +WGALLG CR++ + +L     + L  L+P 
Sbjct: 452 CMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPW 511

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           H G Y+LLSN+YA + KW+EA+K+R +M  R  KK PG SW++    V  F+V D
Sbjct: 512 HSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGD 566



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 189/413 (45%), Gaps = 42/413 (10%)

Query: 20  EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79
           E NI  +N M+     N    +++++   M      P+S T   VL ACAR      G +
Sbjct: 70  EPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVK 129

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSD 138
           +H+ +++ G   D F+  +L ++Y KCG ++ A  VF +I  ++  S+   I GY     
Sbjct: 130 MHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGK 189

Query: 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
           C E++ +F  +  +G++ D  S +  +SAC     ++ G+ I        +  ++FVA +
Sbjct: 190 CREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATA 249

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
           ++DFY + G ++ A  +FD +  K+  SW+++I GY   G    A++LF  M  +G+  D
Sbjct: 250 LVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPD 309

Query: 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
             + + +L +C+  G +E G    + +  +      +    ++D+  + G M+ A ++ +
Sbjct: 310 CYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFR 369

Query: 319 NL----------------------------------PVEPDANIWGALLGACRIYGNVEL 344
            +                                   ++PD N +  LL AC   G VE 
Sbjct: 370 GMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEE 429

Query: 345 GAW---AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394
           G     + E +F L P+   +Y  + ++   AG  DEA    +L+KS   + N
Sbjct: 430 GRRYFNSMECVFTLTPE-IEHYGCMVDLLGRAGCLDEA---HQLIKSMPMEAN 478



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 161/356 (45%), Gaps = 42/356 (11%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILIVG 132
           L+  K IHA ++R GL+ D +L N +       G  N +  + + +    +  +N +I G
Sbjct: 23  LKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRG 82

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
                   ES+ ++  MR  G+  D  +F   + ACA +   + G ++H + ++      
Sbjct: 83  LVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEAD 142

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
            FV  S+++ YT+ G ID A K+FD +P K+ ASW   I GY  +G+   AI++F  + E
Sbjct: 143 AFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLE 202

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-CMVDLLGRAGLME 311
            G+  D  S + +L+AC   G +  G ++ DE   ++     +  A  +VD  G+ G ME
Sbjct: 203 MGLRPDSFSLVEVLSACKRTGDLRSG-EWIDEYITENGMVRNVFVATALVDFYGKCGNME 261

Query: 312 DAVKLI-----KN---------------LPVE--------------PDANIWGALLGACR 337
            A  +      KN               LP E              PD      +L +C 
Sbjct: 262 RARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCA 321

Query: 338 IYGNVELGAWAAEHL---FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390
             G +ELG WA+  +     L     G  ++  +MYA+ G+ D A +V   M+ ++
Sbjct: 322 RLGALELGDWASNLINGNEFLDNSVLGTALI--DMYAKCGRMDRAWEVFRGMRKKD 375



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/216 (18%), Positives = 85/216 (39%), Gaps = 34/216 (15%)

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
            + +K  K IH   +R  L    ++ N +L F    G  + + +I D     +   +NT+
Sbjct: 20  FSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTM 79

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           I G  +      +I ++ +MR++G+  D  ++  +L AC+     E G K    +     
Sbjct: 80  IRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGC 139

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLP----------------------------- 321
           +        +++L  + G +++A K+  ++P                             
Sbjct: 140 EADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRR 199

Query: 322 -----VEPDANIWGALLGACRIYGNVELGAWAAEHL 352
                + PD+     +L AC+  G++  G W  E++
Sbjct: 200 LLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYI 235


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 146/416 (35%), Positives = 233/416 (56%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  +   A  +    A K++VSW  M+A + Q   + KAL   R+M       + V 
Sbjct: 534 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 593

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           LTN + ACA    L+ G++IHA+    G + DL   NAL  +Y++CG +  +   F    
Sbjct: 594 LTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTE 653

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D +++N L+ G+ Q+ +  E+L +F  M   G+ ++  +F  A+ A +  A +KQGK+
Sbjct: 654 AGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ 713

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H V  +    +   V N+++  Y + G I  A K F  +  K+  SWN +I  Y   G 
Sbjct: 714 VHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGF 773

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++ F+ M    V  + V+ + +L+ACSH GLV+KG  YF+ M ++  + P   HY 
Sbjct: 774 GSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYV 833

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VD+L RAGL+  A + I+ +P++PDA +W  LL AC ++ N+E+G +AA HL  L+P+
Sbjct: 834 CVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPE 893

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y+LLSN+YA + KWD     R+ MK +  KK PG SW++ ++ +  F V D+
Sbjct: 894 DSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQ 949



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 193/403 (47%), Gaps = 37/403 (9%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + E+ I +WN M+   A   L  +   L   M   N  PN  T + VL AC  G  
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 201

Query: 74  -LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
                ++IHARI+ +GL     + N L D+Y++ G ++LA+ VF+ +  +D  S+  +I 
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 261

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           G S+    +E++ LF +M +LG+     +F   +SAC  + +++ G+++HG+ ++    +
Sbjct: 262 GLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSS 321

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
             +V N+++  Y   G +  A  IF  +  +D+ ++NTLI G    G  + A+ LF+ M 
Sbjct: 322 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 381

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFD---------------------------E 284
            DG+  D  +  +++ ACS  G + +G++                              E
Sbjct: 382 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 441

Query: 285 MQADSVKPTEMHYACMVDLLGRA-GLMED---AVKLIKNLPVE---PDANIWGALLGACR 337
              D    TE+    + +++  A GL++D   + ++ + + +E   P+   + ++L  C 
Sbjct: 442 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 501

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYI-LLSNMYAEAGKWDEA 379
             G++ELG      +     Q   Y   +L +MYA+ GK D A
Sbjct: 502 RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTA 544



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 163/314 (51%), Gaps = 1/314 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+++     A  +F  +  K+  SW AM++  ++N  E +A++L  +M +    P    
Sbjct: 231 LYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYA 290

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            ++VL AC +   L  G+++H  +++ G + D ++ NAL  +Y   G L  A+++F N+S
Sbjct: 291 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS 350

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V+YN LI G SQ     +++ LF  M L G++ D  +    + AC+    + +G++
Sbjct: 351 QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQ 410

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H  T +    ++  +  ++L+ Y +   I+ A   F    V++   WN +++ YG+L +
Sbjct: 411 LHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDD 470

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +  +  +F  M+ + +  +  +Y +IL  C   G +E G++   ++   + +      + 
Sbjct: 471 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSV 530

Query: 300 MVDLLGRAGLMEDA 313
           ++D+  + G ++ A
Sbjct: 531 LIDMYAKLGKLDTA 544



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 161/335 (48%), Gaps = 4/335 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A ++F N+++++ V++N ++   +Q     KA++L + M +    P+S TL +++ AC+ 
Sbjct: 342 AEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA 401

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
              L  G+++HA   + G   +  +  AL ++YAKC  +  A + F      + V +N++
Sbjct: 402 DGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVM 461

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           +V Y    D   S  +F +M++  +  +  ++   +  C  L  ++ G++IH   I+ + 
Sbjct: 462 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNF 521

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             + +V + ++D Y + G++D A  I      KD  SW T+I GY      D A+  F  
Sbjct: 522 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 581

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M + G+  D V     ++AC+    +++G++   +               +V L  R G 
Sbjct: 582 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGK 641

Query: 310 MEDAVKLIKNLPVEPDANI-WGALLGACRIYGNVE 343
           +E++    +    E   NI W AL+   +  GN E
Sbjct: 642 IEESYLAFEQ--TEAGDNIAWNALVSGFQQSGNNE 674



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 149/327 (45%), Gaps = 37/327 (11%)

Query: 56  PNSVTLTNVLPACARGH-FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
           PN  TL  +L  C + +  L  G+++H++I++ GL+ +  L+  L D Y   G L  A  
Sbjct: 82  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFK 141

Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC-ANLA 172
           VF+ +  R   ++N +I   +  +   E   LF  M    +  +  +F G + AC     
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 201

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           A    ++IH   + + L     V N ++D Y+R+G +DLA ++FD L +KD +SW  +I 
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 261

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK------------ 280
           G         AI LF  M   G+   P ++ ++L+AC     +E G++            
Sbjct: 262 GLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSS 321

Query: 281 -----------YF--------DEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL- 320
                      YF        + + ++  +   + Y  +++ L + G  E A++L K + 
Sbjct: 322 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 381

Query: 321 --PVEPDANIWGALLGACRIYGNVELG 345
              +EPD+N   +L+ AC   G +  G
Sbjct: 382 LDGLEPDSNTLASLVVACSADGTLFRG 408


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 152/437 (34%), Positives = 243/437 (55%), Gaps = 33/437 (7%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF     +++VSWN+++  + +  L  +A  L  +M   N  P+ VT+  V+ A A+
Sbjct: 209 ARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQ 268

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC------------------------ 106
              L  G+++H  I   GLN  + L NAL DMY KC                        
Sbjct: 269 LENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTM 328

Query: 107 -------GCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
                  G L  A  +FN +  +D V +N LI G+ Q     E+L+LF EM+   +  D 
Sbjct: 329 VIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDK 388

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
           ++ +  +SAC+ L A+  G  +H    + +L  ++ +  +++D Y + G I  A ++F+ 
Sbjct: 389 ITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEE 448

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P ++S +W  +I G  + G+   AI+ F  M   G+  D +++I +L+AC HGGLV++G
Sbjct: 449 MPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQG 508

Query: 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
           + YF +M +   + P   HY+C+VDLLGRAG +E+A +LI+++P EPDA +WGAL    R
Sbjct: 509 RDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSR 568

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           I+GNV +G  AA  L  L P   G Y+LL+NMY +A  W++A KVR++M+ R  +K PGC
Sbjct: 569 IHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGC 628

Query: 398 SWVQTRDEVQDFVVNDR 414
           S ++    V DF++ D+
Sbjct: 629 SSIEMNGLVYDFIIRDK 645



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 172/383 (44%), Gaps = 43/383 (11%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPNSVTLTNVLPACARGH 72
           + +N A  N  SWN  +  + ++   + A+ L R M    +  P++ T   +   CA   
Sbjct: 110 ILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFS 169

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNILIV 131
                 EI   +I+ G + DLF+ NA+  +   CG L  A+ +F+ S  RD VS+N +I 
Sbjct: 170 LSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIIN 229

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
           GY +     E+  L+ +M  L +  D V+ +G +SA A L  +  G+++H       L+ 
Sbjct: 230 GYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNL 289

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            + +AN+++D Y +   I+ A  +F+ +  K   SW T+++GY   G +++A+ LF  M 
Sbjct: 290 TVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMP 349

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
           E     D V + A++         ++    F EMQA SV P                   
Sbjct: 350 EK----DVVLWNALIGGFVQAKRSKEALALFHEMQASSVAP------------------- 386

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQHCGYYILLSN 368
           D + ++               L AC   G +++G W   H ++ K     +      L +
Sbjct: 387 DKITVVN-------------CLSACSQLGALDVGIWM--HHYVDKHNLTMNVALGTALVD 431

Query: 369 MYAEAGKWDEASKVRELMKSREA 391
           MYA+ G   +A +V E M  R +
Sbjct: 432 MYAKCGNIKKAIQVFEEMPGRNS 454



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 148/333 (44%), Gaps = 47/333 (14%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVS-------------------------------WNAM 29
           MY K      A  LF N+ +K +VS                               WNA+
Sbjct: 300 MYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNAL 359

Query: 30  VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
           +  F Q +   +AL L  EM   +  P+ +T+ N L AC++   L  G  +H  + +  L
Sbjct: 360 IGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNL 419

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
             ++ L  AL DMYAKCG +  A  VF  +  R+ +++  +I G +       ++S FSE
Sbjct: 420 TMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSE 479

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKE-IHGVTIRKHLHTHLFVANSILDFYTRSG 207
           M  +G+  D ++F+G +SAC +   + QG++  + +T +  +   L   + ++D   R+G
Sbjct: 480 MISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAG 539

Query: 208 RIDLANKIFDCLPVK-DSASWNTLILGYGMLGEVD----TAINLFEAMREDGVGYDPVSY 262
            ++ A ++   +P + D+  W  L  G  + G V      A  L E    DG  Y     
Sbjct: 540 FLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIY----- 594

Query: 263 IAILTACSHG--GLVEKGKKYFDEMQADSVKPT 293
             +L A  +G   + E+ +K    M+   V+ T
Sbjct: 595 --VLLANMYGDANMWEQARKVRKMMEERGVEKT 625



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 141/340 (41%), Gaps = 61/340 (17%)

Query: 47  REMPIHNEFP----------NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLT 96
           R +P H + P           S  L ++L AC     +   KEIHA++I  GL  D F  
Sbjct: 33  RSLPHHKDKPTNWNASHVLIQSNPLLSLLEACTS---MAKMKEIHAQMISTGLISDGF-- 87

Query: 97  NALTDMYAKCG---------CLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
            AL+ + A C          C  +  N  N+   +  S+N+ I GY ++ +   ++ L+ 
Sbjct: 88  -ALSRLVAFCAISEWRNLDYCDKILNNAANL---NXFSWNMAIRGYVESENPINAVLLYR 143

Query: 148 EMRLLGMK-HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
            M   G    D  ++      CA  +      EI G  I+    + LFV N+I+      
Sbjct: 144 NMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSC 203

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           G +  A K+FD   V+D  SWN++I GY   G  D A +L+  M E  V  D V+ I ++
Sbjct: 204 GELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVV 263

Query: 267 TACSHGGLVEKGKKYFDEMQ-------------------------------ADSVKPTEM 295
           +A +    +  G+K    ++                                +  K T +
Sbjct: 264 SASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVV 323

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            +  MV    + GL+E AV+L   +P E D  +W AL+G 
Sbjct: 324 SWTTMVIGYAKFGLLESAVRLFNEMP-EKDVVLWNALIGG 362


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 157/474 (33%), Positives = 255/474 (53%), Gaps = 64/474 (13%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
           AK  + AEA  LF  +  KN+VSWNAM+A + Q+    +A++L ++MP      +SV+ T
Sbjct: 246 AKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMP----HKDSVSWT 301

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLN---------------------------FDLFL 95
            ++    R   L   ++++ ++  K +                             D+  
Sbjct: 302 TIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVC 361

Query: 96  TNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMR---- 150
            N++   Y++ G ++ A N+F  +  ++ VS+N +I GY+Q      +  +F  MR    
Sbjct: 362 WNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNI 421

Query: 151 -----LL----------------------GMKHDVVSFMGAISACANLAAIKQGKEIHGV 183
                L+                      G K D  +F   +SACANLAA++ G ++H  
Sbjct: 422 VSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEY 481

Query: 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
            ++      LFV N+++  Y + GR+  A ++F  +   D  SWN+LI GY + G  + A
Sbjct: 482 ILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKA 541

Query: 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVD 302
              FE M  + V  D V++I +L+ACSH GL  +G   F  M  D +++P   HY+C+VD
Sbjct: 542 FKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVD 601

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362
           LLGR G +E+A   ++ + V+ +A +WG+LLGACR++ N+ELG +AAE LF L+P +   
Sbjct: 602 LLGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAERLFELEPHNASN 661

Query: 363 YILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMK 416
           YI LSNM+AEAG+W+E  +VR LM+ + A K PGCSW++ ++++Q F+ +D  K
Sbjct: 662 YITLSNMHAEAGRWEEVERVRMLMRGKRAGKQPGCSWIEVQNQIQHFLSHDPAK 715



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 146/302 (48%), Gaps = 23/302 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++ +   A   F ++ E+N+VSWN MVA + ++     A QL  ++P     PN+V+ 
Sbjct: 183 YTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIP----NPNAVSW 238

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
             +L   A+   +   +E+  R+  K    ++   NA+   Y +   ++ A  +F  +  
Sbjct: 239 VTMLCGLAKYGKMAEARELFDRMPSK----NVVSWNAMIATYVQDLQVDEAVKLFKKMPH 294

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D VS+  +I GY +     E+  ++++M       D+ +    +S       I+ G+  
Sbjct: 295 KDSVSWTTIINGYIRVGKLDEARQVYNQMPC----KDITAQTALMSGL-----IQNGRID 345

Query: 181 HGVTIRKHLHTHLFVA-NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
               +   +  H  V  NS++  Y+RSGR+D A  +F  +P+K+S SWNT+I GY   G+
Sbjct: 346 EADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQ 405

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +D A  +F+AMRE  +    VS+ +++       L     K    M  +  KP +  +AC
Sbjct: 406 MDRATEIFQAMREKNI----VSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFAC 461

Query: 300 MV 301
            +
Sbjct: 462 TL 463



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 169/365 (46%), Gaps = 60/365 (16%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
           AK++R  +A  LF  ++ +N+VSWN M+A +  N +  +A +L   MP  + F  ++ +T
Sbjct: 59  AKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNFSWALMIT 118

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVF---- 116
                C    + R GK   AR + + +    D    NA+   YAK G  N A+ VF    
Sbjct: 119 -----C----YTRKGKLEKARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMP 169

Query: 117 ----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                       +++ R+ VS+N+++ GY ++ D S +  LF +
Sbjct: 170 AKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEK 229

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           +       + VS++  +   A    + + +E+      K++ +     N+++  Y +  +
Sbjct: 230 IP----NPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSW----NAMIATYVQDLQ 281

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +D A K+F  +P KDS SW T+I GY  +G++D A  ++  M       D  +  A+++ 
Sbjct: 282 VDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQM----PCKDITAQTALMSG 337

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
               G +++  + F  + A  V    + +  M+    R+G M++A+ L + +P++   + 
Sbjct: 338 LIQNGRIDEADQMFSRIGAHDV----VCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVS- 392

Query: 329 WGALL 333
           W  ++
Sbjct: 393 WNTMI 397



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 141/310 (45%), Gaps = 22/310 (7%)

Query: 83  RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSE 141
           RI     + +L   N++  + AK   +  A+ +F+ +S R+ VS+N +I GY   +   E
Sbjct: 38  RIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEE 97

Query: 142 SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201
           +  LF  M     + D  S+   I+       +++ +E+  +   K L T  +  N+++ 
Sbjct: 98  ASELFDVMP----ERDNFSWALMITCYTRKGKLEKARELLELVPDK-LDTACW--NAMIA 150

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y + G+ + A K+F+ +P KD  S+N+++ GY   G++  A+  FE+M E  V    VS
Sbjct: 151 GYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNV----VS 206

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
           +  ++      G +    + F+++      P  + +  M+  L + G M +A +L   +P
Sbjct: 207 WNLMVAGYVKSGDLSSAWQLFEKIP----NPNAVSWVTMLCGLAKYGKMAEARELFDRMP 262

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY-YILLSNMYAEAGKWDEAS 380
              +   W A++         +L    A  LF   P      +  + N Y   GK DEA 
Sbjct: 263 -SKNVVSWNAMIATYV----QDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEAR 317

Query: 381 KVRELMKSRE 390
           +V   M  ++
Sbjct: 318 QVYNQMPCKD 327



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R   A  +F +I   +++SWN++++ +A N    KA +   +M      P+ VT
Sbjct: 500 MYAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVT 559

Query: 61  LTNVLPACARGHFLRPGKEI 80
              +L AC+       G +I
Sbjct: 560 FIGMLSACSHAGLANQGLDI 579



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
           H F  N  +    + G+++ A +IF  +  K+  ++N++I        +  A  LF+ M 
Sbjct: 16  HAFNHNRQIIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMS 75

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
              +    VS+  ++    H  +VE+  + FD M     +     +A M+    R G +E
Sbjct: 76  LRNL----VSWNTMIAGYLHNNMVEEASELFDVMP----ERDNFSWALMITCYTRKGKLE 127

Query: 312 DAVKLIKNLPVEPDANIWGALLGA 335
            A +L++ +P + D   W A++  
Sbjct: 128 KARELLELVPDKLDTACWNAMIAG 151


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 237/414 (57%), Gaps = 2/414 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A ++F  +  K++ SWNA++   AQN   +KAL    EM      P+  ++
Sbjct: 461 YAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSI 520

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++L AC R   L+ GKEIH  ++R GL  + F+  +L  +Y  C      +  F  +  
Sbjct: 521 VSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGD 580

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ V +N ++ GYSQ    +E+LSLF +M   G++ D ++    + AC+ L+A+  GKE+
Sbjct: 581 KNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEV 640

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++  L    FVA S++D Y +SG +  + +IF+ L  K+ ASWN +I G+G+ G+ 
Sbjct: 641 HCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQG 700

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYAC 299
           + A+ LFE M+      D  +++ +L AC H GLV +G  Y  +MQ    ++P   HYAC
Sbjct: 701 NKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYAC 760

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           ++D+LGRAG + +A+  I  +P EPDA IW +LL +   Y ++E+G   AE L  L+   
Sbjct: 761 VIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANK 820

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
              YILLSN+YA AGKWD    VR+ MK    +K+ GCSW++ R +V  F+  +
Sbjct: 821 ADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGE 874



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 196/432 (45%), Gaps = 44/432 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE--FPNS 58
           +Y K     EA  LF  + E+N++SWN+++  F++N   L+A +  R +    +   P+ 
Sbjct: 254 LYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDV 313

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
            T+  +LP C+    +  G  IH   ++ GL  +L + NAL DMY+KCGCL+ A  +F  
Sbjct: 314 ATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRK 373

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAIK 175
           I  +  VS+N +I  YS+     E+  L  +M +    M+ + V+ +  + AC   + + 
Sbjct: 374 IENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELL 433

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
             + +HG ++R        + N+ +  Y + G +  A  +F  +  K  +SWN +I G+ 
Sbjct: 434 SLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHA 493

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD-------EMQA- 287
             G+   A++ +  M   G+  D  S +++L AC   GL++ GK+          EM + 
Sbjct: 494 QNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSF 553

Query: 288 DSVKPTEMHYACMVDLLGRA-----------------------GLMEDAVKLIKNL---P 321
            +V    +++ C     GR                         L  +A+ L + +    
Sbjct: 554 VAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDG 613

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDE 378
           +EPD     ++LGAC     + LG     H F LK        +   L +MYA++G    
Sbjct: 614 LEPDEIAIASILGACSQLSALGLGKEV--HCFALKNSLMEDNFVACSLMDMYAKSGFLGH 671

Query: 379 ASKVRELMKSRE 390
           + ++   +  +E
Sbjct: 672 SQRIFNRLNGKE 683



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 139/275 (50%), Gaps = 6/275 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MY+    P E+  +F  +  KN+  WNA+V+ + +N L  +A+    E+    EF P++ 
Sbjct: 152 MYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNF 211

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   ++ AC     +  GK +H   ++ GL  DLF+ NA+  +Y KCG L+ A  +F+ +
Sbjct: 212 TFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKM 271

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL--GMKHDVVSFMGAISACANLAAIKQ 176
             ++ +S+N LI G+S+     E+   F  +     G+  DV + +  +  C+    +  
Sbjct: 272 PEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDV 331

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G  IHG+ ++  L   L V N+++D Y++ G +  A  +F  +  K   SWN++I  Y  
Sbjct: 332 GMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSR 391

Query: 237 LGEVDTAINLFEA--MREDGVGYDPVSYIAILTAC 269
            G V    +L     M E+ +  + V+ + +L AC
Sbjct: 392 EGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 121/230 (52%), Gaps = 3/230 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y   S+P      F  + +KN V WNAM++ ++QN L  +AL L R+M      P+ + 
Sbjct: 561 LYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIA 620

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + ++L AC++   L  GKE+H   ++  L  D F+  +L DMYAK G L  +Q +FN ++
Sbjct: 621 IASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLN 680

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
            ++  S+N++I G+      ++++ LF +M+    + D  +F+G + AC +   + +G  
Sbjct: 681 GKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLN 740

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASW 227
            +  +     L   L     ++D   R+GR++ A    + +P + D+  W
Sbjct: 741 YLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIW 790



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 134/281 (47%), Gaps = 14/281 (4%)

Query: 64  VLPACARGHFLRPGKEIHARI-IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           +L  C +   +  G+++   + +    + D  L   L  MY+ CG    ++ VF+ +  +
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +   +N L+ GY +     E++  F E+  +   + D  +F   I AC     I  GK +
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV 232

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG+ ++  L   LFV N+++  Y + G +D A ++FD +P ++  SWN+LI G+   G  
Sbjct: 233 HGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFW 292

Query: 241 DTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH-- 296
             A   F ++ E G G  P   + + +L  CS  G V+ G      +   +VK   +H  
Sbjct: 293 LEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMV----IHGMAVKLGLVHEL 348

Query: 297 YAC--MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
             C  ++D+  + G + +A  L + +  +   + W +++GA
Sbjct: 349 MVCNALIDMYSKCGCLSEAAILFRKIENKSVVS-WNSMIGA 388


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 154/420 (36%), Positives = 240/420 (57%), Gaps = 8/420 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLEL-KALQLVREMPIHNEFPNSV 59
           +YA++SR AE   +F  + E++ VSWN ++   A +   + +A+++  EM      PN V
Sbjct: 248 LYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRV 307

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
           T  N+L   +     +   +IHA I++  +  D  + NAL   Y K G +   + +F+  
Sbjct: 308 TFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRM 367

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              RDEVS+N +I GY       +++ L   M   G + D  +F   +SACA +A ++ G
Sbjct: 368 SERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECG 427

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            E+H   IR  L + + + ++++D Y++ GRID A++ F+ +PV++  SWN++I GY   
Sbjct: 428 MEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARH 487

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMH 296
           G  D A+ LF  M+  G   D ++++ +L+ACSH GLV++G +YF  M +   + P   H
Sbjct: 488 GHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEH 547

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN---VELGAWAAEHLF 353
           Y+CMVDLLGRAG ++     I  +P++P+  IW  +LGAC   GN    ELG  AAE LF
Sbjct: 548 YSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGAC-CRGNGRKTELGRRAAEMLF 606

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            + PQ+   Y+LLSNMYA  GKW++ ++ R  M+    KK  GCSWV  +D V  FV  D
Sbjct: 607 NMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGD 666



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 163/337 (48%), Gaps = 4/337 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y +      A  LF  + ++N V+W  +++ + QN +   A  +++EM      PN   
Sbjct: 44  VYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLPNRFA 103

Query: 61  LTNVLPACARGH-FLRPGKEIHARIIRKGLN-FDLFLTNALTDMYAKCGCLNLAQNVFNI 118
             + + AC     + R G+++H   IR GLN   + + N L +MYAKCG ++ A++VF +
Sbjct: 104 FGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGL 163

Query: 119 SF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              +D VS+N +I G  Q     +++  ++ MR  G+     + + A+S+CA+L  I  G
Sbjct: 164 MVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLG 223

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           ++ HG  I+  L   + V+N++L  Y  + R+    K+F  +  +D  SWNT+I      
Sbjct: 224 QQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADS 283

Query: 238 G-EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
           G  V  AI +F  M   G   + V++I +L   S     +   +    +   +VK     
Sbjct: 284 GASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAI 343

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
              ++   G++G ME+  ++   +    D   W +++
Sbjct: 344 ENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMI 380



 Score = 44.7 bits (104), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 1/102 (0%)

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   ++    + LF+ N++++ Y R G    A K+FD +P ++  +W  LI GY   G 
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL-VEKGKK 280
            + A  + + M  +G   +  ++ + + AC    L   KG++
Sbjct: 82  PEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQ 123


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 152/414 (36%), Positives = 240/414 (57%), Gaps = 4/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A   F  I   +++  + M++ +AQ+    +A +L   +   +  PN  +
Sbjct: 288 MYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYS 347

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L++VL AC     L  GK+IH   I+ G   DLF+ NAL D YAKC  ++ +  +F+ S 
Sbjct: 348 LSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFS-SL 406

Query: 121 RD--EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           RD  EVS+N ++VG+SQ+    E+LS+F EM+   M    V++   + ACA+ A+I+   
Sbjct: 407 RDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAG 466

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH    +   +    + NS++D Y + G I  A K+F  L  +D  SWN +I GY + G
Sbjct: 467 QIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHG 526

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
           +   A+ LF+ M +  V  + ++++A+L+ C   GLV  G   FD M+ D  +KP+  HY
Sbjct: 527 QAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHY 586

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C+V LLGRAG + DA++ I ++P  P A +W ALL +C I+ NV LG ++AE +  ++P
Sbjct: 587 TCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEP 646

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           Q    Y+LLSNMYA AG  D+ + +R+ M++   +K PG SWV+ + E+  F V
Sbjct: 647 QDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSV 700



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 138/328 (42%), Gaps = 23/328 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    A A  LF  + E+N+VS+  +V   AQ      A  L R +       N   
Sbjct: 105 MYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFV 164

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           LT +L              +H+   + G + + F+ + L D Y+ C  ++ A++VFN I 
Sbjct: 165 LTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIV 224

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V +  ++  YS+ +DC E+                 +F  A S C+ LA     + 
Sbjct: 225 RKDAVVWTAMVSCYSE-NDCPEN-----------------AFRCAQS-CSLLAISCARQG 265

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  I+    T   V  ++LD Y + G I  A   F+ +P  D    + +I  Y    +
Sbjct: 266 IHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQ 325

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A  LF  +    V  +  S  ++L AC++   ++ GK+  +       +        
Sbjct: 326 NEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNA 385

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           ++D   +   M+ ++K+  +L    DAN
Sbjct: 386 LMDFYAKCNDMDSSLKIFSSL---RDAN 410



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 131/291 (45%), Gaps = 32/291 (10%)

Query: 39  ELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL--NFDLFLT 96
           EL +L ++  +P  + F  +  L   +   ARG   R G+ +H  ++R+G     DLF  
Sbjct: 44  ELTSLAILPSVPGVDSFACARQLQGCI---ARGD-ARGGRAVHGHVVRRGGVGRLDLFCA 99

Query: 97  NALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-- 153
           N L +MY K G L  A+ +F+ +  R+ VS+  L+  ++Q  D   + +LF  +R  G  
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHE 159

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
           +   V++ M  ++   + A +  G  +H    +     + FV + ++D Y+    +  A 
Sbjct: 160 VNQFVLTTMLKLAIAMDAAGLAGG--VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAE 217

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
            +F+ +  KD+  W  ++  Y    E D   N F   +         S +AI  +C+  G
Sbjct: 218 HVFNGIVRKDAVVWTAMVSCY---SENDCPENAFRCAQS-------CSLLAI--SCARQG 265

Query: 274 LVEKGKKYFDEMQADSVKPTEMHY-ACMVDLLGRAGLMEDAVKLIKNLPVE 323
           +     K  ++        TE H    ++D+  + G ++DA    + +P +
Sbjct: 266 IHGCAIKTLND--------TEPHVGGALLDMYAKCGDIKDARLAFEMIPYD 308


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 150/415 (36%), Positives = 238/415 (57%), Gaps = 3/415 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP-IHNEFPNSVT 60
           YA+     EA  LF  + EK+  SW AMV  + +     +AL L   M  + N  PN  T
Sbjct: 161 YAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFT 220

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++  + A A    +R GKEIH  I+R GL+ D  L ++L DMY KCGC++ A+N+F+ I 
Sbjct: 221 VSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIV 280

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+  +I  Y ++S   E  SLFSE+     + +  +F G ++ACA+L   + GK+
Sbjct: 281 EKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQ 340

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG   R     + F ++S++D YT+ G I+ A  + D  P  D  SW +LI G    G+
Sbjct: 341 VHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQ 400

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
            D A+  F+ + + G   D V+++ +L+AC+H GLVEKG ++F  + +   +  T  HY 
Sbjct: 401 PDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYT 460

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLL R+G  E    +I  +P++P   +W ++LG C  YGN++L   AA+ LF ++P+
Sbjct: 461 CLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPE 520

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +   Y+ ++N+YA AGKW+E  K+R+ M+     K PG SW + + +   F+  D
Sbjct: 521 NPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAAD 575



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 137/293 (46%), Gaps = 12/293 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F  I EK++VSW +M+  + ++    +   L  E+    E PN  T
Sbjct: 262 MYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYT 321

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
              VL ACA       GK++H  + R G +   F +++L DMY KCG +  A++V +   
Sbjct: 322 FAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCP 381

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           + D VS+  LI G +Q     E+L  F  +   G K D V+F+  +SAC +   +++G E
Sbjct: 382 KPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLE 441

Query: 180 IHGVTIRKHLHTHLFVANSIL-DFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGML 237
                  KH  +H     + L D   RSGR +    +   +P+K S   W +++ G    
Sbjct: 442 FFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTY 501

Query: 238 GEVD----TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
           G +D     A  LF+   E     +PV+Y+ +    +  G  E+  K    MQ
Sbjct: 502 GNIDLAEEAAQELFKIEPE-----NPVTYVTMANIYAAAGKWEEEGKMRKRMQ 549



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 17/137 (12%)

Query: 139 CSESLSLFSEMRLLGM--KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
           C + L L   ++LLG   K    ++   I  C+   A+++GK++H     +H+ T  FV 
Sbjct: 65  CGQKL-LREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVH-----EHIRTSGFVP 118

Query: 197 -----NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
                N +L  Y + G +  A K+FD +P +D  SWN ++ GY  +G ++ A  LF+ M 
Sbjct: 119 GIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMT 178

Query: 252 EDGVGYDPVSYIAILTA 268
           E     D  S+ A++T 
Sbjct: 179 EK----DSYSWTAMVTG 191


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 155/450 (34%), Positives = 243/450 (54%), Gaps = 37/450 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A  +F ++  K++VSW +M + +    L    L +  EM  +   PNSVTL
Sbjct: 177 YGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTL 236

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
           +++LPAC+    L+ G+ IH   +R G+  ++F+ +AL  +YA+C  +  A+ VF++   
Sbjct: 237 SSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPH 296

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSE-------------------------------- 148
           RD VS+N ++  Y    +  + L+LFS+                                
Sbjct: 297 RDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEM 356

Query: 149 ---MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
              M+ LG K + ++    + AC+ L +++ GKE+H    R  L   L    +++  Y +
Sbjct: 357 LRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAK 416

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
            G ++L+  +FD +  KD  +WNT+I+   M G     + LFE+M + G+  + V++  +
Sbjct: 417 CGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGV 476

Query: 266 LTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           L+ CSH  LVE+G + F+ M  D  V+P   HYACMVD+  RAG + +A + I+ +P+EP
Sbjct: 477 LSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEP 536

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
            A+ WGALLGACR+Y NVEL   +A  LF ++P + G Y+ L N+   A  W EAS+ R 
Sbjct: 537 TASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARI 596

Query: 385 LMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           LMK R   K PGCSW+Q  D V  FVV D+
Sbjct: 597 LMKERGITKTPGCSWLQVGDRVHTFVVGDK 626



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 136/287 (47%), Gaps = 1/287 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
            A  LF NI + +  + + +++ F    L  +A++L   +      P++     V  AC 
Sbjct: 84  RAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACG 143

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
                   KE+H   IR G+  D FL NAL   Y KC C+  A+ VF+ +  +D VS+  
Sbjct: 144 ASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTS 203

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +   Y         L++F EM   G+K + V+    + AC+ L  +K G+ IHG  +R  
Sbjct: 204 MSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHG 263

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           +  ++FV ++++  Y R   +  A  +FD +P +D  SWN ++  Y    E D  + LF 
Sbjct: 264 MIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFS 323

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
            M   GV  D  ++ A++  C   G  EK  +   +MQ    KP ++
Sbjct: 324 QMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQI 370



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 1/113 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      +  +F  I  K++V+WN M+   A +    + L L   M      PNSVT
Sbjct: 413 MYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVT 472

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLA 112
            T VL  C+    +  G +I   + R  L   D      + D++++ G L+ A
Sbjct: 473 FTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEA 525


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 246/423 (58%), Gaps = 14/423 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+    +A  LF  I E+N+ +WNA ++N   +    +A++   E    +  PNS+T
Sbjct: 152 MYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSIT 211

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
               L AC+    L  G ++H  ++R G + D+ + N L D Y KC  +  ++ +F  + 
Sbjct: 212 FCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMG 271

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS---FM--GAISACANLAAI 174
            ++ VS+  L+  Y Q  +  ++  L+     L  + D+V    FM    +SACA +A +
Sbjct: 272 TKNAVSWCSLVAAYVQNHEDEKASVLY-----LRSRKDIVETSDFMISSVLSACAGMAGL 326

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           + G+ IH   ++  +   +FV ++++D Y + G I+ + + FD +P K+  + N+LI GY
Sbjct: 327 ELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGY 386

Query: 235 GMLGEVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQAD-SVK 291
              G+VD A+ LFE M   G G  P  ++++++L+ACS  G VE G K FD M++   ++
Sbjct: 387 AHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIE 446

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
           P   HY+C+VD+LGRAG++E A + IK +P++P  ++WGAL  ACR++G  +LG  AAE+
Sbjct: 447 PGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAEN 506

Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           LF L P+  G ++LLSN +A AG+W EA+ VRE +K    KK  G SW+  +++V  F  
Sbjct: 507 LFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQA 566

Query: 412 NDR 414
            DR
Sbjct: 567 KDR 569



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 179/395 (45%), Gaps = 11/395 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K   P  A  +      +N+VSW ++++  AQN     AL    EM      PN  T
Sbjct: 51  MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 110

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
                 A A       GK+IHA  ++ G   D+F+  +  DMY K    + A+ +F+ I 
Sbjct: 111 FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 170

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+  ++N  I          E++  F E R +    + ++F   ++AC++   +  G +
Sbjct: 171 ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ 230

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+ +R    T + V N ++DFY +  +I  +  IF  +  K++ SW +L+  Y    E
Sbjct: 231 LHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHE 290

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A  L+   R+D V        ++L+AC+    +E G+          V+ T    + 
Sbjct: 291 DEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSA 350

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VD+ G+ G +ED+ +    +P E +     +L+G     G V++     E    + P+ 
Sbjct: 351 LVDMYGKCGCIEDSEQAFDEMP-EKNLVTRNSLIGGYAHQGQVDMALALFEE---MAPRG 406

Query: 360 CG------YYILLSNMYAEAGKWDEASKVRELMKS 388
           CG       ++ L +  + AG  +   K+ + M+S
Sbjct: 407 CGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRS 441



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 97/202 (48%), Gaps = 8/202 (3%)

Query: 74  LRPGKEIHARIIRKGLNFDL----FLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNI 128
           +R G+ +HARI++     D     FL N L +MY+K      A+ V  ++  R+ VS+  
Sbjct: 22  MRLGRVVHARIVK---TLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTS 78

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           LI G +Q    S +L  F EMR  G+  +  +F  A  A A+L     GK+IH + ++  
Sbjct: 79  LISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCG 138

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
               +FV  S  D Y ++   D A K+FD +P ++  +WN  I      G    AI  F 
Sbjct: 139 RILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFI 198

Query: 249 AMREDGVGYDPVSYIAILTACS 270
             R      + +++ A L ACS
Sbjct: 199 EFRRIDGHPNSITFCAFLNACS 220


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 246/423 (58%), Gaps = 14/423 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+    +A  LF  I E+N+ +WNA ++N   +    +A++   E    +  PNS+T
Sbjct: 102 MYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSIT 161

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
               L AC+    L  G ++H  ++R G + D+ + N L D Y KC  +  ++ +F  + 
Sbjct: 162 FCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMG 221

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS---FM--GAISACANLAAI 174
            ++ VS+  L+  Y Q  +  ++  L+     L  + D+V    FM    +SACA +A +
Sbjct: 222 TKNAVSWCSLVAAYVQNHEDEKASVLY-----LRSRKDIVETSDFMISSVLSACAGMAGL 276

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           + G+ IH   ++  +   +FV ++++D Y + G I+ + + FD +P K+  + N+LI GY
Sbjct: 277 ELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGY 336

Query: 235 GMLGEVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQAD-SVK 291
              G+VD A+ LFE M   G G  P  ++++++L+ACS  G VE G K FD M++   ++
Sbjct: 337 AHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIE 396

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
           P   HY+C+VD+LGRAG++E A + IK +P++P  ++WGAL  ACR++G  +LG  AAE+
Sbjct: 397 PGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAEN 456

Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           LF L P+  G ++LLSN +A AG+W EA+ VRE +K    KK  G SW+  +++V  F  
Sbjct: 457 LFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQA 516

Query: 412 NDR 414
            DR
Sbjct: 517 KDR 519



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 179/395 (45%), Gaps = 11/395 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K   P  A  +      +N+VSW ++++  AQN     AL    EM      PN  T
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
                 A A       GK+IHA  ++ G   D+F+  +  DMY K    + A+ +F+ I 
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 120

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+  ++N  I          E++  F E R +    + ++F   ++AC++   +  G +
Sbjct: 121 ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ 180

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+ +R    T + V N ++DFY +  +I  +  IF  +  K++ SW +L+  Y    E
Sbjct: 181 LHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHE 240

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A  L+   R+D V        ++L+AC+    +E G+          V+ T    + 
Sbjct: 241 DEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSA 300

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VD+ G+ G +ED+ +    +P E +     +L+G     G V++     E    + P+ 
Sbjct: 301 LVDMYGKCGCIEDSEQAFDEMP-EKNLVTRNSLIGGYAHQGQVDMALALFEE---MAPRG 356

Query: 360 CG------YYILLSNMYAEAGKWDEASKVRELMKS 388
           CG       ++ L +  + AG  +   K+ + M+S
Sbjct: 357 CGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRS 391


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 246/414 (59%), Gaps = 11/414 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA++   +EA  LF  +  +++ +W AMV+ F QN +  +A ++  EMP  NE    V+ 
Sbjct: 256 YAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNE----VSW 311

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             ++    +   +   +E+  ++  +  +      N +   YA+CG ++ A+ +F+ +  
Sbjct: 312 NAMIAGYVQSQQIEKARELFDQMPSRNTSS----WNTMVTGYAQCGNIDQAKILFDEMPQ 367

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD +S+  +I GY+Q+    E+L LF +M+  G   +  +   A+S+CA +AA++ GK++
Sbjct: 368 RDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQL 427

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  ++    T     N++L  Y + G I+ A  +F+ +  KD  SWNT+I GY   G  
Sbjct: 428 HGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFG 487

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYAC 299
             A+ LFE+M+   +  D V+ + +L+ACSH GLV+KG +YF+ M Q   +     HY C
Sbjct: 488 KEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTC 546

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           M+DLLGRAG +++A+ L+K++P  PDA  WGALLGA RI+G+ ELG  AAE +F ++P +
Sbjct: 547 MIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDN 606

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G Y+LLSN+YA +G+W E  ++R  M+ +  KK PG SWV+ +++   F V D
Sbjct: 607 SGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGD 660



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 154/289 (53%), Gaps = 23/289 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K+   + A  LF+ + EK++VSWNAM++ FAQN    +A ++  +M + NE    ++ 
Sbjct: 132 YVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNE----ISW 187

Query: 62  TNVLPACARGHFLRPGK-EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +L A     +++ G+ E   R+    +++++   N L   Y +   L+ A+++F+ + 
Sbjct: 188 NGLLSA-----YVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMP 242

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD++S+NI+I GY+Q    SE+  LF E+ +     DV ++   +S       + +   
Sbjct: 243 VRDKISWNIMITGYAQNGLLSEARRLFEELPI----RDVFAWTAMVSGFVQNGMLDEATR 298

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I      K+  +     N+++  Y +S +I+ A ++FD +P ++++SWNT++ GY   G 
Sbjct: 299 IFEEMPEKNEVSW----NAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGN 354

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           +D A  LF+ M +     D +S+ A+++  +  G  E+    F +M+ D
Sbjct: 355 IDQAKILFDEMPQ----RDCISWAAMISGYAQSGQSEEALHLFIKMKRD 399



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 166/364 (45%), Gaps = 31/364 (8%)

Query: 18  IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPG 77
           I + +IV WN  ++ +      ++  Q    + + N      T+T    A   G+     
Sbjct: 55  IVDSDIVKWNRKISAY------MRKGQCESALSVFNGMRRRSTVT--YNAMISGYLSNNK 106

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
            +   ++  K  + DL   N +   Y K G L+ A+ +FN +  +D VS+N ++ G++Q 
Sbjct: 107 FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               E+  +F +M    +  + +S+ G +SA      I+  + +        +   +   
Sbjct: 167 GFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRL----FDSKMDWEIVSW 218

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N ++  Y R  R+D A  +FD +PV+D  SWN +I GY   G +  A  LFE +      
Sbjct: 219 NCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL----PI 274

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            D  ++ A+++     G++++  + F+EM     +  E+ +  M+    ++  +E A +L
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKAREL 330

Query: 317 IKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-CGYYILLSNMYAEAGK 375
              +P   + + W  ++      GN++     A+ LF   PQ  C  +  + + YA++G+
Sbjct: 331 FDQMPSR-NTSSWNTMVTGYAQCGNID----QAKILFDEMPQRDCISWAAMISGYAQSGQ 385

Query: 376 WDEA 379
            +EA
Sbjct: 386 SEEA 389



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F +I EK+IVSWN M+A +A++    +AL L   M +  + P+ VT
Sbjct: 449 MYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIK-PDDVT 507

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           L  VL AC+    +  G E    + +  G+  +      + D+  + G L+ A N+
Sbjct: 508 LVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNL 563


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 238/415 (57%), Gaps = 5/415 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVS--WNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           +Y+   R  EA  +F    EK      W AM   +++N    +AL L R+M      P +
Sbjct: 116 LYSVCGRVNEARRVFQIDDEKPPEEPVWVAMAIGYSRNGFSHEALLLYRDMLSCCVKPGN 175

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN 117
              +  L AC+       G+ IHA+I++  +   D  + NAL  +Y + GC +    VF 
Sbjct: 176 FAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFE 235

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  R+ VS+N LI G++      E+LS F  M+  GM    ++    +  CA + A+  
Sbjct: 236 EMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGFSWITLTTMLPVCAQVTALHS 295

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GKEIHG  ++   +  + + NS++D Y + G I    K+FD +  KD  SWNT++ G+ +
Sbjct: 296 GKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSI 355

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE-MQADSVKPTEM 295
            G++  A+ LF+ M   G+  + ++++A+L+ CSH GL  +GK+ F   MQ   V+P+  
Sbjct: 356 NGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLE 415

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYAC+VD+LGR+G  ++A+ + +N+P+ P  +IWG+LL +CR+YGNV L    AE LF +
Sbjct: 416 HYACLVDILGRSGKFDEALSVAENIPMRPSGSIWGSLLNSCRLYGNVALAEVVAERLFEI 475

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
           +P + G Y++LSN+YA AG W++  +VRE+M     KK+ GCSW+Q + ++  FV
Sbjct: 476 EPNNPGNYVMLSNIYANAGMWEDVKRVREMMALTGMKKDAGCSWIQIKHKIHTFV 530


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 140/416 (33%), Positives = 245/416 (58%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y +     +A  +   + E+N+VSW AM++ ++Q+    +AL+L   M       N  T
Sbjct: 85  LYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFT 144

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL +C     ++  +++H+ +++      +F+ ++L DMY K G +  A+ VF+ + 
Sbjct: 145 LATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLP 204

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS   +I GY+Q     E+L LF ++   GM+ + V+F   +++ + LA++  GK+
Sbjct: 205 ERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQ 264

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+ +RK L   + + NS++D Y++ G++  + ++FD +P + + SWN +++GYG  G 
Sbjct: 265 VHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGI 324

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HYA 298
               + LF  M E+ V  D V+ +A+L+ CSHGGLV++G   FD +  +      + HY 
Sbjct: 325 GQEVVQLFRTMTEE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYG 383

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C++DLLGR+G ++ A+ LI+++P EP   IWG+LLGACR++ NV +G   A+ L  ++P 
Sbjct: 384 CVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPG 443

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G Y++LSN+YA AG W +  +VR+LM      K P  SW+     +  F  ++R
Sbjct: 444 NAGNYVILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSER 499



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 179/360 (49%), Gaps = 40/360 (11%)

Query: 65  LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDE 123
           + AC     L  G+++HA +++      ++L   L  +Y +CG L+ A+NV + +  R+ 
Sbjct: 48  ITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNV 107

Query: 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGV 183
           VS+  +I GYSQ+   +E+L LF  M   G K +  +    +++C    +I+Q +++H +
Sbjct: 108 VSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSL 167

Query: 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
            ++ +  +H+FV +S+LD Y +SG I  A K+FD LP +D+ S   +I GY  LG  D A
Sbjct: 168 VVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEA 227

Query: 244 INLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQADSV-- 290
           ++LF  +   G+  + V++  +LT+ S           HG ++ K   +F  +Q   +  
Sbjct: 228 LDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDM 287

Query: 291 ------------------KPTEMHYACMVDLLGRAGLMEDAVKLIKNLP--VEPDANIWG 330
                             + + + +  M+   GR G+ ++ V+L + +   V+PD+    
Sbjct: 288 YSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEEVKPDSVTLL 347

Query: 331 ALLGACRIYGNVELGAWAAEHLFMLKPQ----HCGYYILLSNMYAEAGKWDEASKVRELM 386
           A+L  C   G V+ G    +   ++K Q    H G+Y  + ++   +G+  +A  + E M
Sbjct: 348 AVLSGCSHGGLVDEGLDIFD--LIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHM 405



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 8/163 (4%)

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
            AI+AC    A+ +G+++H   ++      +++A  ++  Y R G +D A  + D +P +
Sbjct: 46  AAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPER 105

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282
           +  SW  +I GY   G    A+ LF  M   G   +  +   +LT+C     V +  +  
Sbjct: 106 NVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCP----VHQSIQQV 161

Query: 283 DEMQADSVKPT-EMHY---ACMVDLLGRAGLMEDAVKLIKNLP 321
           +++ +  VK   E H    + ++D+ G++G +++A K+   LP
Sbjct: 162 EQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLP 204


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 146/416 (35%), Positives = 245/416 (58%), Gaps = 4/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A ++F+ +  +N+VSWNAM++   +N L  ++  L   +   +   +  T
Sbjct: 275 MYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTT 334

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + ++L  C++   L  GK +H   IR     +L L+ A+ D+Y+KCG L  A  VFN + 
Sbjct: 335 IVSLLQGCSQTASLATGKILHGCAIRS-FESNLILSTAIVDLYSKCGSLKQATFVFNRMK 393

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ +++  ++VG +Q     ++L LF++M+  G+  + V+F+  + +CA+L ++K+G+ 
Sbjct: 394 DRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRS 453

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KDSASWNTLILGYGMLG 238
           IHG   R      +    +++D Y + G+I+LA +IF    + KD   WN++I GYGM G
Sbjct: 454 IHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHG 513

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A+ ++  M E+G+  +  +++++L+ACSH  LVE+G   F+ M+ D +++P E HY
Sbjct: 514 HGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHY 573

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           AC+VDLL RAG  E+A  LI+ +P +P   +  ALL  CR + N+ LG   ++ L  L  
Sbjct: 574 ACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDA 633

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            + G YI+LSN+YAEA +WD+   +R LM++R  KK PG S V+T + V  F   D
Sbjct: 634 MNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGD 689



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 184/367 (50%), Gaps = 4/367 (1%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           K  +  EA  +F  +  K++V WN+++  + Q      A QL  EM      P+ +T+T+
Sbjct: 177 KFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTS 236

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRD 122
           ++ AC     L+ GK +H  ++  GL  D+ +  +  DMY+K G +  A+ VF  +  R+
Sbjct: 237 LIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRN 296

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            VS+N +I G  +     ES  LF  +       D+ + +  +  C+  A++  GK +HG
Sbjct: 297 LVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHG 356

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             IR    ++L ++ +I+D Y++ G +  A  +F+ +  ++  +W  +++G    G  + 
Sbjct: 357 CAIRS-FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAED 415

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
           A+ LF  M+E+G+  + V++++++ +C+H G +++G+     +         ++   +VD
Sbjct: 416 ALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVD 475

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN--VELGAWAAEHLFMLKPQHC 360
           +  + G +  A ++  +  +  D  +W +++    ++G+    +G +       LKP   
Sbjct: 476 MYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQT 535

Query: 361 GYYILLS 367
            +  LLS
Sbjct: 536 TFLSLLS 542



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 179/412 (43%), Gaps = 45/412 (10%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A Y+F    +   +  NAM+  + Q+    + L+L   M   N   +S + T  L ACA 
Sbjct: 83  ARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACAS 142

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
                 G EI +  + KG+  + F+ +++     K G +  AQ VF+ +  +D V +N +
Sbjct: 143 SLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSI 202

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY Q      +  LF EM   G+K   ++    I AC  +  +K GK +HG  +   L
Sbjct: 203 IGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGL 262

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
              + V  S +D Y++ G I+ A  +F  +P ++  SWN +I G    G V  + +LF  
Sbjct: 263 GNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHR 322

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGK-------KYFDEMQADSVKPTEMHYAC--- 299
           +     G+D  + +++L  CS    +  GK       + F+     S    +++  C   
Sbjct: 323 LVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSL 382

Query: 300 --------------------MVDLLGRAGLMEDAVKLIKNLPVE---PDANIWGALLGAC 336
                               M+  L + G  EDA++L   +  E    ++  + +L+ +C
Sbjct: 383 KQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSC 442

Query: 337 RIYGNVELGAWAAEHLFMLKPQHCGY------YILLSNMYAEAGKWDEASKV 382
              G+++ G     HLF L     G+         L +MYA+ GK + A ++
Sbjct: 443 AHLGSLKRGRSIHGHLFRL-----GFAFDIVNMTALVDMYAKCGKINLAERI 489



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 124/260 (47%), Gaps = 2/260 (0%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDE-VSYNILIVGYSQT 136
           K  HA+II   L+ D F+   L   Y+    L  A+ VF+  F+ + +  N ++ GY Q+
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQS 108

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               E+L LF  MR   ++ D  S   A+ ACA+    + G EI    + K +  + FV 
Sbjct: 109 GRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVG 168

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           +S++ F  + G+I  A ++FD +P KD   WN++I GY   G  D A  LF  M   G+ 
Sbjct: 169 SSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIK 228

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
             P++  +++ AC   G ++ GK     +    +    +     VD+  + G +E A  +
Sbjct: 229 PSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWV 288

Query: 317 IKNLPVEPDANIWGALLGAC 336
              +P     + W A++  C
Sbjct: 289 FYKMPTRNLVS-WNAMISGC 307


>gi|302791754|ref|XP_002977643.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
 gi|300154346|gb|EFJ20981.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
          Length = 879

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 152/424 (35%), Positives = 239/424 (56%), Gaps = 4/424 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F ++  ++++SWN ++A   Q+    +AL L+  M +     + ++
Sbjct: 347 MYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKIS 406

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             N LP CA    L  G+ IH+ I+  G+  D+ L NA+ DMY  C   + A  VF  + 
Sbjct: 407 FVNALPLCATSEALAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMK 466

Query: 120 FRDEVSYNILIVGYS-QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            RD+VS+N +I  Y+ Q    SE+L LF +M+L G   DV+SF+ A+SACA  A++ +GK
Sbjct: 467 VRDQVSWNAMITAYAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGK 526

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H       L +++ VAN++L+ Y +SG + LA K+F  +P+ D  SWN +I  +   G
Sbjct: 527 LLHDRIRETGLESNMTVANAVLNMYAKSGTLVLARKMFGKMPLPDVISWNGMISAFAQHG 586

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPTEMH 296
             D  +  F  M  +G   + V+++++++ACSHGGLV+ G + F  +  D  ++ P   H
Sbjct: 587 HADQVLRFFRRMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEH 646

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y CMVDL+ RAG ++ A K I   P++PD  I   +LGA +++ +VE    +AEHL  L 
Sbjct: 647 YYCMVDLIARAGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELT 706

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMK 416
           P     Y++LSN+Y E GK DE +K+R LM  +  +K P  S +  +  V +F   D   
Sbjct: 707 PDRSAAYVVLSNLYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTN 766

Query: 417 TFTP 420
             TP
Sbjct: 767 ARTP 770



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 158/337 (46%), Gaps = 3/337 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K S   +A  +F  I  K +V WNAM+  +AQ     +A+Q+   M +       +T
Sbjct: 144 MYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERIT 203

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVFNI 118
              VL AC++   L   K +   +  +  +   D     AL + Y  CG L  A   F+ 
Sbjct: 204 FIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAFSR 263

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              + +    +I  Y+Q     E+L LF  M L G+K D ++ M  ++AC+    +++G+
Sbjct: 264 HRLELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGR 323

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IHG         H+   N++++ Y + G ++ A ++F  +  +D  SWNT+I  +G   
Sbjct: 324 IIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHS 383

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
           +   A++L   M+ DGV  D +S++  L  C+    + KG+     +    +K   M   
Sbjct: 384 QHPEALHLLHLMQLDGVKADKISFVNALPLCATSEALAKGRMIHSWIVESGIKADVMLDN 443

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            ++D+ G     +DA ++ + + V  D   W A++ A
Sbjct: 444 AILDMYGSCKSTDDASRVFRAMKVR-DQVSWNAMITA 479



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 160/345 (46%), Gaps = 18/345 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY       +A   F  +  ++ ++W  ++    Q     +AL L R M +    P +  
Sbjct: 42  MYVDCGSLIDAKACFDRMPVQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRN 101

Query: 61  LTNVLPAC-ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
              VL AC A    L  G+ IH  +    +  D +++  L  MY KC  +  A+ VF+ I
Sbjct: 102 FVAVLGACSADPELLEEGRRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGI 161

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +  V +N +I  Y+Q     +++ +F  M L G+K + ++F+G + AC+ L  ++  K
Sbjct: 162 RHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAK 221

Query: 179 EIH-GVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            +   V  R+H H H    A ++++FY   G ++ A + F       S     LIL   M
Sbjct: 222 LVKLCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAF-------SRHRLELILATAM 274

Query: 237 LGEV------DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           + +       D A+ LF+ M  +GV  D ++ +A+L ACS    +E+G+     M+    
Sbjct: 275 ITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRIIHGFMREIRF 334

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                    ++++ G+ G +E+AV++ +++    D   W  ++ A
Sbjct: 335 DRHVNAGNALINMYGKCGSLEEAVEVFRSMQ-HRDVISWNTIIAA 378



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 130/258 (50%), Gaps = 6/258 (2%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           ++L   A    L  GKE+HARI +  ++   F+ + L  MY  CG L  A+  F+ +  +
Sbjct: 3   DLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQ 62

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC-ANLAAIKQGKEI 180
           D +++  LI  + Q  D  ++L LF  M+L G+     +F+  + AC A+   +++G+ I
Sbjct: 63  DALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRI 122

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HGV     + +  +V+ ++L  Y +   ++ A K+FD +  K    WN +I  Y      
Sbjct: 123 HGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHH 182

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY---FDEMQADSVKPTEMHY 297
           + AI +F AM  +GV  + +++I +L ACS    +E  K      +E + D +  +    
Sbjct: 183 EQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFAT 242

Query: 298 ACMVDLLGRAGLMEDAVK 315
           A +V+  G  G +E A +
Sbjct: 243 A-LVNFYGSCGDLEQAFR 259



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 89/172 (51%), Gaps = 2/172 (1%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           +   A+  ++  GKE+H    +  +    F+ + ++  Y   G +  A   FD +PV+D+
Sbjct: 5   LDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDA 64

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG-GLVEKGKKYFD 283
            +W  LI  +G +G+ + A++LF +M+ +GV     +++A+L ACS    L+E+G++   
Sbjct: 65  LTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIHG 124

Query: 284 EMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            ++  +++        ++ + G+   +EDA K+   +  +     W A++ A
Sbjct: 125 VLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVE-WNAMITA 175


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/426 (35%), Positives = 251/426 (58%), Gaps = 12/426 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN--- 57
           MY+K  + + A  LF  I  +NIV+W +++  + QN    +AL + +E        N   
Sbjct: 126 MYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEE 185

Query: 58  ------SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL 111
                 SV + +VL AC+R       + +H   I+ GL+  + + N L D YAKCG ++L
Sbjct: 186 VGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSL 245

Query: 112 AQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACA 169
           ++ VF+ ++ +D VS+N +I  Y+Q    +++  +F  M +  G K++ V+    + ACA
Sbjct: 246 SRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACA 305

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
           +  A++ G  +H   I+     ++ +A SI+D Y + G+ ++A   FD +  K+  SW  
Sbjct: 306 HEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTA 365

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD- 288
           +I GYGM G    A+++F  M   GV  + +++I++L ACSH G +E+G ++F+ M  + 
Sbjct: 366 MIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEY 425

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWA 348
           +V+P   HY CMVDLLGRAG +++A  LIK++ V  D  +WG+LL ACRI+ +VEL   +
Sbjct: 426 NVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEIS 485

Query: 349 AEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQD 408
           A  LF L P +CGYY+LL+N+YA+AG+W +  ++R L+K R   K PG S V+ +  V  
Sbjct: 486 ARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHV 545

Query: 409 FVVNDR 414
           F+V D+
Sbjct: 546 FLVGDK 551



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 165/333 (49%), Gaps = 18/333 (5%)

Query: 22  NIVSWNAMVANFAQNR---LELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78
           ++ SWN+++A  A+       L+A   +R++ I    PN  T    + +C+    L  GK
Sbjct: 46  DVYSWNSLIAELARGGDSCESLRAFSWMRKLDIK---PNRSTFPCAIKSCSALFDLNSGK 102

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
           + H + +  G   DLF+++AL DMY+KCG L+ A+ +F+ I  R+ V++  LI GY Q  
Sbjct: 103 QAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQND 162

Query: 138 DCSESLSLFSEMRL---------LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           D  E+L +F E            +G   D V+ +  +SAC+ ++     + +HGV I+  
Sbjct: 163 DAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVG 222

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L   + V N++LD Y + G + L+ K+FD +  KD  SWN++I  Y   G    A  +F 
Sbjct: 223 LDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFH 282

Query: 249 AMREDGVG-YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
            M + G G Y+ V+   +L AC+H G +  G    D++         +    ++D+  + 
Sbjct: 283 GMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKC 342

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           G  E A      +  E +   W A++    ++G
Sbjct: 343 GQAEMARNAFDGMK-EKNVRSWTAMIAGYGMHG 374


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 163/430 (37%), Positives = 254/430 (59%), Gaps = 12/430 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+       A  +F     + I  +NA+    +      + L + R M       +  T
Sbjct: 114 MYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFT 173

Query: 61  LTNVLPACARGH----FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
            T VL AC         L  G+EIHA I+R G +  + +   L DMYAK GC++ A  VF
Sbjct: 174 YTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVF 233

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL--LGMKHDVVSFMGAISACANLAA 173
           N +  ++ VS++ +I  Y++     E+L LF E+ L    +  + V+ +  + ACA LAA
Sbjct: 234 NQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAA 293

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           ++QG+ IHG  +RK L + L V ++++  Y R G+++L  ++FD +  +D  SWN+LI  
Sbjct: 294 LEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISS 353

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKP 292
           YG+ G    AI +FE M  +GV   P+S++++L ACSH GLV++GK  F+ M  A  + P
Sbjct: 354 YGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICP 413

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
           +  HYACMVDLLGRA  +E+A K+I+N+ +EP   +WG+LLG+CRI+ NVEL   A+  L
Sbjct: 414 SVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRL 473

Query: 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV-- 410
           F L+P + G Y+LL+++YAEAG WD   +V++L+++R  +K PG SW++ + ++  FV  
Sbjct: 474 FDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSV 533

Query: 411 --VNDRMKTF 418
             VN RM+  
Sbjct: 534 DEVNPRMEQL 543



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/414 (21%), Positives = 176/414 (42%), Gaps = 55/414 (13%)

Query: 27  NAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIR 86
           N ++ +  +     +AL+L+   P     P   T   ++ +C   + L   + +H  ++ 
Sbjct: 43  NKLIQSLCKQGNLTQALELLSLEP----NPAQHTYELLILSCTHQNSLLDAQRVHRHLLE 98

Query: 87  KGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF-RDEVSYNILIVGYSQTSDCSESLSL 145
            G + D FL   L +MY+    ++ A+ VF+ +  R    YN L    S      E L++
Sbjct: 99  NGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNM 158

Query: 146 FSEMRLLGMKHDVVSFMGAISACAN----LAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201
           +  M  +G+  D  ++   + AC      ++ + +G+EIH   +R     ++ +  +++D
Sbjct: 159 YRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVD 218

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y + G +  A+ +F+ +PVK+  SW+ +I  Y   G+   A+ LF  +  +     P S
Sbjct: 219 MYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNS 278

Query: 262 ------------------------YI-------------AILTACSHGGLVEKGKKYFDE 284
                                   YI             A++T  +  G +E G++ FD+
Sbjct: 279 VTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQ 338

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGN 341
           M    V    + +  ++   G  G  + A+ + + +    VEP    + ++LGAC   G 
Sbjct: 339 MDKRDV----VSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGL 394

Query: 342 VELGA--WAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKK 393
           V+ G   + + H+         +Y  + ++   A + +EA+K+ E M+     K
Sbjct: 395 VDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPK 448


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 157/446 (35%), Positives = 245/446 (54%), Gaps = 38/446 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MYA+ +       LF  + +++++SWN M++ + + R    A+ +   M   +   P+  
Sbjct: 181 MYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEA 240

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF--- 116
           T+ + L AC     L  GK+IH   +R  + F   + NAL DMY KCGCL++A+ VF   
Sbjct: 241 TVVSTLSACTALKRLELGKKIH-HYVRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEM 299

Query: 117 ---NI--------------------------SFRDEVSYNILIVGYSQTSDCSESLSLFS 147
              N+                            RD V +  +I GY Q +   E+++LF 
Sbjct: 300 PSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFR 359

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           EM++  +K D    +  ++ CA   AI+QGK IH       +     V  ++++ Y + G
Sbjct: 360 EMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCG 419

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
            I+ A +IF  L VKD+ASW ++I G  M G+   A+ LF  M++ GV  D +++I +L+
Sbjct: 420 FIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLS 479

Query: 268 ACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
           ACSHGGLVE+G+K+F+ M+ +  +KP   HY C+VDLLGRAGL+ +A +LIK +P E  A
Sbjct: 480 ACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKA 539

Query: 327 ---NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVR 383
               ++G+LL ACRIYGNVE+G   A+ L   +      + LL+N+YA A +W++ +KVR
Sbjct: 540 ITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVR 599

Query: 384 ELMKSREAKKNPGCSWVQTRDEVQDF 409
             MK    KK PGCS ++    + +F
Sbjct: 600 RKMKDLGVKKTPGCSSIEVDSIIHEF 625



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 169/356 (47%), Gaps = 35/356 (9%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F  I    ++ +N ++  FA+     + L L  ++     +P++ T   V  A   
Sbjct: 90  AEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGY 149

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              +   +++   + + GL FD ++ N+L DMYA+    ++ + +F+ +  RD +S+N++
Sbjct: 150 LGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVM 209

Query: 130 IVGYSQTSDCSESLSLFSEMR-LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           I GY +     +++++F  M+   G+  D  + +  +SAC  L  ++ GK+IH   +R +
Sbjct: 210 ISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHY-VRDN 268

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV-------- 240
           +     + N++LD Y + G + +A  +F+ +P K+   W T++ GY   GE+        
Sbjct: 269 VKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFE 328

Query: 241 -----------------------DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
                                  D A+ LF  M+   V  D    +++LT C+  G +E+
Sbjct: 329 GSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQ 388

Query: 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           GK   + +  + +    +    ++++  + G +E A+++   L V+  A+ W +++
Sbjct: 389 GKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTAS-WTSII 443



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 161/324 (49%), Gaps = 15/324 (4%)

Query: 78  KEIHARIIRKGLNFDLFLTNAL----TDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           K+IHA+I R GL+ D+   N L    TD +   G LN A+ +F  I +   + YN++I  
Sbjct: 54  KQIHAQIFRVGLHQDIVSLNKLMAFCTDPFN--GNLNYAEKMFKYIRYPCLLIYNLIIKA 111

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           +++  +   +L LFS++R  G+  D  ++     A   L  + + +++ G+  +  L   
Sbjct: 112 FAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFD 171

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
            +V NS++D Y +    D+   +FD +P +D  SWN +I GY      + AIN+F  M+E
Sbjct: 172 TYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQE 231

Query: 253 D-GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
           + G+  D  + ++ L+AC+    +E GKK    ++ D+VK T +    ++D+  + G + 
Sbjct: 232 ESGLMPDEATVVSTLSACTALKRLELGKKIHHYVR-DNVKFTPIIGNALLDMYCKCGCLS 290

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP-QHCGYYILLSNMY 370
            A  + + +P   +   W  ++      G +E     A  LF   P +    +  + N Y
Sbjct: 291 IARAVFEEMP-SKNVICWTTMVSGYANCGELE----EARELFEGSPIRDVVIWTAMINGY 345

Query: 371 AEAGKWDEASKVRELMKSREAKKN 394
            +  ++DEA  +   M+ R+ K +
Sbjct: 346 VQFNRFDEAVALFREMQIRKVKPD 369



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 9/185 (4%)

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR--SGRIDLANKIFD 217
           S +  + +C ++  +KQ   IH    R  LH  +   N ++ F T   +G ++ A K+F 
Sbjct: 39  SCISYLKSCKSMTHLKQ---IHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFK 95

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            +       +N +I  +   G     + LF  +REDG+  D  +Y  +  A  + G V K
Sbjct: 96  YIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSK 155

Query: 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA-- 335
            +K    +    ++        ++D+  +  L +    L   +P + D   W  ++    
Sbjct: 156 AEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMP-DRDVISWNVMISGYV 214

Query: 336 -CRIY 339
            CR +
Sbjct: 215 KCRRF 219


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 148/439 (33%), Positives = 248/439 (56%), Gaps = 33/439 (7%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
            EA  LF  + EK++V+W+A++A F QN +  +A++    M       + V   + L AC
Sbjct: 327 VEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSAC 386

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF-------- 120
           A    +  GK IH+  ++ G    + L NAL  MY+KCG + +A+ +F+ ++        
Sbjct: 387 ANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWN 446

Query: 121 ------------------------RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH 156
                                   +D VS++ +I GY+Q     E+L+LF EM++ G K 
Sbjct: 447 SMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKP 506

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
           D  + +  ISACA LAA++QGK +H    R  L  ++ +  +++D Y + G ++ A ++F
Sbjct: 507 DETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVF 566

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
             +  K  ++WN LILG  M G V++++++F  M++  V  + ++++ +L AC H GLV+
Sbjct: 567 YGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVD 626

Query: 277 KGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +G+ +F  M  D  ++P   HY CMVDLLGRAG +++A +L+  +P+ PD   WGALLGA
Sbjct: 627 EGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGA 686

Query: 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395
           C+ +G+ E+G      L  L+P H G+++LLSN+YA  GKWD+  ++R +M      K P
Sbjct: 687 CKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIP 746

Query: 396 GCSWVQTRDEVQDFVVNDR 414
           GCS ++    + +F+  D+
Sbjct: 747 GCSMIEANGVIHEFLAGDK 765



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 126/233 (54%), Gaps = 3/233 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K +    A  +F ++ EK++VSW++M++ +AQN L  + L L +EM +    P+  TL
Sbjct: 452 YLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTL 511

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR 121
            +V+ ACAR   L  GK +HA I R GL  ++ L   L DMY KCGC+  A  VF     
Sbjct: 512 VSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIE 571

Query: 122 DEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
             +S +N LI+G +       SL +FS M+   +  + ++FMG + AC ++  + +G+  
Sbjct: 572 KGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHH 631

Query: 181 HGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
               I  H +  ++     ++D   R+G++  A ++ + +P+  D A+W  L+
Sbjct: 632 FYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALL 684



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 157/374 (41%), Gaps = 95/374 (25%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           ++ AC+        K++H  +++ G + D+++ N L + ++ C  +  A  VFN  S  D
Sbjct: 219 LIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLD 278

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMR------------LLGMKHDVV----------- 159
            VS+N ++ GY +  +  E+  ++ +M             L GM+  VV           
Sbjct: 279 SVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLE 338

Query: 160 ------------------------SFMG---------------AISACANLAAIKQGKEI 180
                                   +F+G               A+SACANL  +  GK I
Sbjct: 339 KDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLI 398

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANK-------------------------- 214
           H ++++    +++ + N+++  Y++ G I +A K                          
Sbjct: 399 HSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLV 458

Query: 215 -----IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
                IFD +P KD  SW+++I GY      D  + LF+ M+  G   D  + +++++AC
Sbjct: 459 DNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISAC 518

Query: 270 SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIW 329
           +    +E+GK     ++ + +    +    ++D+  + G +E A+++   + +E   + W
Sbjct: 519 ARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTW 577

Query: 330 GALLGACRIYGNVE 343
            AL+    + G VE
Sbjct: 578 NALILGLAMNGLVE 591



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 78/154 (50%), Gaps = 4/154 (2%)

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
            Y QT+    + +L+  M    +  D  ++   I AC+   +  + K++H   ++    +
Sbjct: 187 AYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDS 246

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            ++V N++++ ++    +  A ++F+   V DS SWN+++ GY  +G V+ A +++  M 
Sbjct: 247 DVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMP 306

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           E  +    ++  +++      GLV +  K FDEM
Sbjct: 307 ERSI----IASNSMIVLFGMRGLVVEACKLFDEM 336



 Score = 44.7 bits (104), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F+ + EK I +WNA++   A N L   +L +   M   +  PN +T
Sbjct: 552 MYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEIT 611

Query: 61  LTNVLPACARGHFLRPGK-EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
              VL AC     +  G+   ++ I    +  ++     + D+  + G L  A+ + N
Sbjct: 612 FMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLN 669


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 153/420 (36%), Positives = 246/420 (58%), Gaps = 8/420 (1%)

Query: 2   YAKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           Y++     EA  +F  + E   ++ VSWNAM+    Q+R  L+A++L REM       + 
Sbjct: 184 YSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDM 243

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC-GCLNLAQNVFN 117
            T+ +VL A      L  G + H  +I+ G + +  + + L D+Y+KC G +   + VF 
Sbjct: 244 FTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFE 303

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSE-SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
            I+  D V +N +I G+SQ  D SE  +  F EM+  G   D  SF+   SAC+NL++  
Sbjct: 304 EIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPS 363

Query: 176 QGKEIHGVTIRKHL-HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
            GK++H + I+  + +  + V N+++  Y++ G +  A ++FD +P  +  S N++I GY
Sbjct: 364 VGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGY 423

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
              G    ++ LFE M +  +  + +++IA+L+AC H G VE+G+KYF+ M+    ++P 
Sbjct: 424 AQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPE 483

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY+CM+DLLGRAG +++A ++I+ +P  P +  W  LLGACR +GNVEL   AA    
Sbjct: 484 AEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFL 543

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            L+P +   Y++LSNMYA A +W+EA+ V+ LM+ R  KK PGCSW++   +V  FV  D
Sbjct: 544 QLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAED 603



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 200/444 (45%), Gaps = 62/444 (13%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK S    A  +F  I + +IVS+N ++A +A       AL+L  E+       +  TL
Sbjct: 85  YAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTL 144

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI--- 118
           + V+ AC  G  +   +++H  ++  G +    + NA+   Y++ G LN A+ VF     
Sbjct: 145 SGVIIAC--GDDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGE 202

Query: 119 -SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              RDEVS+N +IV   Q  +  E++ LF EM   G+K D+ +    ++A   +  +  G
Sbjct: 203 GGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGG 262

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTR-SGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            + HG+ I+   H +  V + ++D Y++ +G +    K+F+ +   D   WNT+I G+  
Sbjct: 263 MQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQ 322

Query: 237 LGEV-DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             ++ +  I  F  M+ +G   D  S++ + +ACS+      GK    ++ A ++K +++
Sbjct: 323 YEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGK----QVHALAIK-SDI 377

Query: 296 HY------ACMVDLLGRAGLMEDAVKLIKNLP---------------------------- 321
            Y        +V +  + G + DA ++   +P                            
Sbjct: 378 PYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFE 437

Query: 322 ------VEPDANIWGALLGACRIYGNVELGAW---AAEHLFMLKPQHCGYYILLSNMYAE 372
                 + P+   + A+L AC   G VE G       +  F ++P+   +Y  + ++   
Sbjct: 438 LMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPE-AEHYSCMIDLLGR 496

Query: 373 AGKWDEASKVRELMKSREAKKNPG 396
           AGK  EA ++ E M       NPG
Sbjct: 497 AGKLKEAERIIETMPF-----NPG 515



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 147/347 (42%), Gaps = 46/347 (13%)

Query: 55  FPNSV-TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ 113
           FP  + T  N+L AC     L  GK +HA   +  +    +L+N  T +Y+KCG L+ AQ
Sbjct: 5   FPLQLQTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQ 64

Query: 114 NVFN--------------------------------ISFRDEVSYNILIVGYSQTSDCSE 141
             F+                                I   D VSYN LI  Y+   +C  
Sbjct: 65  TSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRP 124

Query: 142 SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201
           +L LF+E+R L    D  +  G I AC +   +   +++H   +      +  V N++L 
Sbjct: 125 ALRLFAEVRELRFGLDGFTLSGVIIACGDDVGLV--RQLHCFVVVCGYDCYASVNNAVLA 182

Query: 202 FYTRSGRIDLANKIFDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
            Y+R G ++ A ++F  +     +D  SWN +I+  G   E   A+ LF  M   G+  D
Sbjct: 183 CYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVD 242

Query: 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR-AGLMEDAVKLI 317
             +  ++LTA +    +  G ++   M            + ++DL  + AG M +  K+ 
Sbjct: 243 MFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVF 302

Query: 318 KNLPVEPDANIWGALLGACRIYGNV-ELGAWAAEHLFMLKPQHCGYY 363
           + +   PD  +W  ++     Y ++ E G W    +     QH G++
Sbjct: 303 EEIAA-PDLVLWNTMISGFSQYEDLSEDGIWCFREM-----QHNGFH 343



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 46/79 (58%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +F  + E N+VS N+M+A +AQ+ +E+++L+L   M   +  PN++T
Sbjct: 391 MYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTIT 450

Query: 61  LTNVLPACARGHFLRPGKE 79
              VL AC     +  G++
Sbjct: 451 FIAVLSACVHTGKVEEGQK 469


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 156/422 (36%), Positives = 248/422 (58%), Gaps = 9/422 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY   SRP +A   F  I + N V   AM + + +N L   +L+L R M I ++  + V 
Sbjct: 138 MYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAM-IASDSASVVD 196

Query: 61  LTNVL---PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC--LNLAQNV 115
               L    A AR         +HA I + G   +  + N + D YAK G   L +A+ V
Sbjct: 197 EAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKV 256

Query: 116 FNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAA 173
           F+   RD VS+N +I  Y+Q    +E++ L+S+M  +G  +K + V+    + ACA+  A
Sbjct: 257 FDTMERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGA 316

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           I+ GK IH   +R  L  +++V  SI+D Y++ GR+++A++ F  +  K+  SW+ +I G
Sbjct: 317 IQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITG 376

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKP 292
           YGM G    A+ +F  M+  G+  + +++I++L ACSH GL+++G+ +++ M+ +  ++ 
Sbjct: 377 YGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEA 436

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
              HY CMVDLLGRAG +++A  LIK + V+PDA IWGALL ACRI+ NVEL   + + L
Sbjct: 437 GVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRL 496

Query: 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVN 412
           F L   + GYY+LLSN+YAEA  W +  ++R L+K+R  +K PG S  + + ++  F V 
Sbjct: 497 FELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVG 556

Query: 413 DR 414
           D+
Sbjct: 557 DK 558



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 121/270 (44%), Gaps = 10/270 (3%)

Query: 79  EIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           ++H   +R GL   D +  +AL  MY  C     A+  F+ I   + V    +  GY + 
Sbjct: 114 QLHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRN 173

Query: 137 SDCSESLSLFSEMRLLGMKH--DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
           +    SL LF  M         D  + + A SA A +        +H +  +     +  
Sbjct: 174 NLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAG 233

Query: 195 VANSILDFYTRSGRIDL--ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           V N++LD Y + G  DL  A K+FD +  +D  SWN++I  Y   G    AI L+  M  
Sbjct: 234 VVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLN 292

Query: 253 DGVGY--DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
            G G   + V+  A+L AC+H G ++ GK+  +++    ++        +VD+  + G +
Sbjct: 293 VGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRV 352

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           E A +  + +  E +   W A++    ++G
Sbjct: 353 EMASRAFRKIK-EKNILSWSAMITGYGMHG 381


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 150/441 (34%), Positives = 248/441 (56%), Gaps = 40/441 (9%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  I   N   WN M+  + Q+    KAL L + M  +N  P++ T   V+ ACA    
Sbjct: 85  IFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLL 144

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
              GKEIH  +++ G + D+++ N L +MYA CG +  A+ +F+                
Sbjct: 145 EFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAG 204

Query: 118 -------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
                              +  +D VS++ LI GY Q     E+L +F EM   GM+ D 
Sbjct: 205 YVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDE 264

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL----DFYTRSGRIDLANK 214
           V  +  +SACA+L+ +K GK IHG+ IR  + +++ + N+++    D Y + G ++ A +
Sbjct: 265 VVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALE 324

Query: 215 IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL 274
           +F+ +  K  +SWN LI+G  + G V+ ++++F  M+ +GV  + ++++ +L AC H GL
Sbjct: 325 VFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGL 384

Query: 275 VEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           V++G+ +F  M +   ++P   HY CMVDLLGRAGL+ +A KLI+++P+ PD   WGALL
Sbjct: 385 VDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALL 444

Query: 334 GACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKK 393
           GAC+ +G+ E+G      L  L+P H G+++LLSN++A  G W++  +VR +MK +   K
Sbjct: 445 GACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVK 504

Query: 394 NPGCSWVQTRDEVQDFVVNDR 414
            PGCS ++    V +F+  D+
Sbjct: 505 TPGCSLIEANGVVHEFLAGDK 525



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 129/229 (56%), Gaps = 7/229 (3%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EA  LF+ + EK++VSW+A+++ + QN +  +AL +  EM  +    + V + +VL ACA
Sbjct: 216 EAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACA 275

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNAL----TDMYAKCGCLNLAQNVFN-ISFRDEV 124
               ++ GK IH  +IR G+   + L NAL    +DMY KCGC+  A  VFN +  +   
Sbjct: 276 HLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVS 335

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           S+N LI+G +       SL +FSEM+  G+  + ++FMG + AC ++  + +G+      
Sbjct: 336 SWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASM 395

Query: 185 IRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
           I KH +  ++     ++D   R+G ++ A K+ + +P+  D A+W  L+
Sbjct: 396 IEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALL 444



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 10/247 (4%)

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL--A 112
           F  ++TL+ +       H L+    I +++I  G   D F  + L         + L  +
Sbjct: 23  FKPTITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYS 82

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
             +F+ I   +   +N ++  Y Q++   ++L L+  M    +  D  ++   + ACA  
Sbjct: 83  LQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVR 142

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
                GKEIH   ++    + ++V N++++ Y   G +  A K+FD  PV DS SWN+++
Sbjct: 143 LLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSIL 202

Query: 232 LGY---GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
            GY   G +G+V  A  LF  M E     D VS+ A+++     G+ E+    F EM A+
Sbjct: 203 AGYVKKGDMGQVMEAWKLFNEMDEK----DMVSWSALISGYEQNGMYEEALVMFIEMNAN 258

Query: 289 SVKPTEM 295
            ++  E+
Sbjct: 259 GMRLDEV 265



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F+ + EK + SWNA++   A N L  ++L +  EM  +   PN +T
Sbjct: 312 MYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEIT 371

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
              VL AC     +  G+   A +I K G+  ++     + D+  + G LN A+ + 
Sbjct: 372 FMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLI 428


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 149/413 (36%), Positives = 251/413 (60%), Gaps = 4/413 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF--PNS 58
           +Y+K     +A  +F ++ EK++V+W ++++   +N    +AL++  +M   ++   P+S
Sbjct: 417 LYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDS 476

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
             +T+V  ACA    LR G ++H  +I+ GL  ++F+ ++L D+Y+KCG   +A  VF +
Sbjct: 477 DIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTS 536

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +S  + V++N +I  YS+ +    S+ LF+ M   G+  D VS    + A ++ A++ +G
Sbjct: 537 MSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKG 596

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K +HG T+R  + +   + N+++D Y + G    A  IF  +  K   +WN +I GYG  
Sbjct: 597 KSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSH 656

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G+  TA++LF+ M++ G   D V+++++++AC+H G VE+GK  F+ M+ D  ++P   H
Sbjct: 657 GDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEH 716

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YA MVDLLGRAGL+E+A   IK +P+E D++IW  LL A R + NVELG  +AE L  ++
Sbjct: 717 YANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRME 776

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
           P+    Y+ L N+Y EAG  +EA+K+  LMK +   K PGCSW++  D    F
Sbjct: 777 PERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSDRTNVF 829



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 165/324 (50%), Gaps = 5/324 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     EA  +F  + +K +  WNAMVA +A+N     AL L   M   +  P+S T
Sbjct: 316 MYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFT 375

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L+NV+  C+       GK +HA + ++ +     + +AL  +Y+KCGC   A  VF ++ 
Sbjct: 376 LSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSME 435

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMR--LLGMKHDVVSFMGAISACANLAAIKQG 177
            +D V++  LI G  +     E+L +F +M+     +K D        +ACA L A++ G
Sbjct: 436 EKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFG 495

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            ++HG  I+  L  ++FV +S++D Y++ G  ++A K+F  +  ++  +WN++I  Y   
Sbjct: 496 LQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRN 555

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
              + +I+LF  M   G+  D VS  ++L A S    + KGK          + P++ H 
Sbjct: 556 NLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGI-PSDTHL 614

Query: 298 A-CMVDLLGRAGLMEDAVKLIKNL 320
              ++D+  + G  + A  + K +
Sbjct: 615 KNALIDMYVKCGFSKYAENIFKKM 638



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 161/326 (49%), Gaps = 8/326 (2%)

Query: 18  IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPA-CARGHFLRP 76
           ++ +++  WN+M+  + + R   + +   R M +    P++ +L+ V+   C  G+F R 
Sbjct: 128 VSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRRE 187

Query: 77  -GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDE---VSYNILIVG 132
            GK+IH  ++R  L+ D FL  AL DMY K G    A  VF +   D+   V +N++IVG
Sbjct: 188 EGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVF-VEIEDKSNVVLWNVMIVG 246

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           +  +  C  SL L+   +   +K    SF GA+ AC+       G++IH   ++  LH  
Sbjct: 247 FGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHND 306

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
            +V  S+L  Y++ G +  A  +F C+  K    WN ++  Y       +A++LF  MR+
Sbjct: 307 PYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQ 366

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
             V  D  +   +++ CS  GL   GK    E+    ++ T    + ++ L  + G   D
Sbjct: 367 KSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPD 426

Query: 313 AVKLIKNLPVEPDANIWGALL-GACR 337
           A  + K++  E D   WG+L+ G C+
Sbjct: 427 AYLVFKSME-EKDMVAWGSLISGLCK 451



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 158/330 (47%), Gaps = 27/330 (8%)

Query: 25  SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV-TLTNVLPACARGHFLRPGKEIHAR 83
           S N+ +    Q    L+AL L  +    + F  SV T  ++L AC+    L  GK IH  
Sbjct: 26  SINSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHGS 85

Query: 84  IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--------ISFRDEVSYNILIVGYSQ 135
           ++  G  +D F+  +L +MY KCG L+ A  VF+        +S RD   +N +I GY +
Sbjct: 86  VVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFK 145

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK--QGKEIHGVTIRKHLHTHL 193
                E +  F  M + G++ D  S    +S        +  +GK+IHG  +R  L T  
Sbjct: 146 FRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDS 205

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSAS---WNTLILGYGMLGEVDTAINLFEAM 250
           F+  +++D Y + G    A ++F  + ++D ++   WN +I+G+G  G  +++++L+   
Sbjct: 206 FLKTALIDMYFKFGLSIDAWRVF--VEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLA 263

Query: 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH---YAC--MVDLLG 305
           + + V     S+   L ACS      +   +  ++  D VK   +H   Y C  ++ +  
Sbjct: 264 KNNSVKLVSTSFTGALGACSQ----SENSGFGRQIHCDVVK-MGLHNDPYVCTSLLSMYS 318

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           + G++ +A + + +  V+    IW A++ A
Sbjct: 319 KCGMVGEA-ETVFSCVVDKRLEIWNAMVAA 347


>gi|125557892|gb|EAZ03428.1| hypothetical protein OsI_25566 [Oryza sativa Indica Group]
          Length = 519

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 153/424 (36%), Positives = 237/424 (55%), Gaps = 11/424 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVT 60
           YAKS     A  +F     ++ V WN MV+ ++ + L  +   +   M   + FP +  T
Sbjct: 51  YAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGLVRECWDVFGSMR-RSGFPGDGFT 109

Query: 61  LTNVLPACARGH-------FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ 113
            + +L   A           L  G  +H  +IR GL+ D+ +  AL DMYAKCG +  A 
Sbjct: 110 FSALLSVRASSSCYDHANLLLVLGSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEAS 169

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
            VF+ +  R+ VS+N +IV Y +     E+  LF  M   G   D ++    +S+CA++A
Sbjct: 170 RVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCADMA 229

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           A  +  ++H  T+R+ L   L V N+++  Y ++G +  A + F  +   D  +W++++ 
Sbjct: 230 AANEATQLHAYTVRRGLQDFLQVGNALIMVYGKNGFVQEAKRTFGMIHNPDLVTWSSMVS 289

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVK 291
            +  LG   +AI+LF+ M + G+  D ++++ +L+ACSH GL+E G KYF  M  D  + 
Sbjct: 290 SFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFKYFLLMTRDYKID 349

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
           PT  H AC+VDLLGRAG + DA + + N+  + + ++ GA LGACR+ GN+E   WAA  
Sbjct: 350 PTPQHLACLVDLLGRAGRIRDAYEFLVNMSCDANVDVIGAFLGACRMRGNIESAKWAASR 409

Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           LF LKP     Y+L+SN YA AG W+E +KVR +M++    K PGCSW++    VQ FV 
Sbjct: 410 LFSLKPDDPINYLLISNTYAAAGDWNELAKVRSVMRNMCGNKVPGCSWIEIGGIVQTFVS 469

Query: 412 NDRM 415
           ND M
Sbjct: 470 NDMM 473



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 109/214 (50%), Gaps = 8/214 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  + AEAS +F  +  +N VSWNA++  + ++    +A  L   M  H   P+ +T
Sbjct: 158 MYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELT 217

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L ++L +CA         ++HA  +R+GL   L + NAL  +Y K G +  A+  F  I 
Sbjct: 218 LASLLSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMVYGKNGFVQEAKRTFGMIH 277

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V+++ ++  ++       ++ LF  M   G++ D ++F+G +SAC++   I+ G +
Sbjct: 278 NPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFK 337

Query: 180 IHGVTIRKH----LHTHLFVANSILDFYTRSGRI 209
              +  R +       HL     ++D   R+GRI
Sbjct: 338 YFLLMTRDYKIDPTPQHL---ACLVDLLGRAGRI 368



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%)

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + ++    +   VA ++ D Y +SG +D A ++FD  P++D   WN ++  Y   G 
Sbjct: 28  VHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGL 87

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILT 267
           V    ++F +MR  G   D  ++ A+L+
Sbjct: 88  VRECWDVFGSMRRSGFPGDGFTFSALLS 115


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 150/417 (35%), Positives = 239/417 (57%), Gaps = 8/417 (1%)

Query: 2   YAKSSRPAEASYLFH-NIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y+K    A+A  +F      +N+VSW A+++   QN     A+ L   M      PN  T
Sbjct: 347 YSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFT 406

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            + +L A      L P  +IHA++I+       F+  AL   Y+K G    A ++F  I 
Sbjct: 407 YSAMLKASLS--ILPP--QIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIE 462

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA-IKQGK 178
            +D V+++ ++  ++Q  DC  +  LF++M + G+K +  +    I ACA  +A + QG+
Sbjct: 463 QKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGR 522

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           + H ++I+   H  + V+++++  Y+R G ID A  +F+    +D  SWN++I GY   G
Sbjct: 523 QFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHG 582

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               AI  F  M   G+  D V+++A++  C+H GLV +G++YFD M  D  + PT  HY
Sbjct: 583 YSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHY 642

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACMVDL  RAG +++ + LI+++P    A +W  LLGACR++ NVELG ++A+ L  L+P
Sbjct: 643 ACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEP 702

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
                Y+LLSN+YA AGKW E  +VR+LM  R+ KK  GCSW+Q +++V  F+  D+
Sbjct: 703 HDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDK 759



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 168/360 (46%), Gaps = 21/360 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     E   +F  + +KN+V+W +++   A  ++  + + L   M     +PN  T
Sbjct: 144 MYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFT 203

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL A A    L  G+ +HA+ ++ G    +F+ N+L +MYAKCG +  A++VFN + 
Sbjct: 204 FASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWME 263

Query: 120 FRDEVSYNILIVGYSQTSDCS-ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            RD VS+N L+ G  Q ++C  E+L LF E R    K    ++   I  CANL  +   +
Sbjct: 264 TRDMVSWNTLMAGL-QLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALAR 322

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLILGYGML 237
           ++H   ++   H    V  ++ D Y++ G +  A  IF      ++  SW  +I G    
Sbjct: 323 QLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQN 382

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G++  A+ LF  MRED V  +  +Y A+L A               ++ A  +K    H 
Sbjct: 383 GDIPLAVVLFSRMREDRVMPNEFTYSAMLKA--------SLSILPPQIHAQVIKTNYQHI 434

Query: 298 ----ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
                 ++    + G  EDA+ + K +  + D   W A+L      G+ E     A +LF
Sbjct: 435 PFVGTALLASYSKFGSTEDALSIFKMIE-QKDVVAWSAMLSCHAQAGDCE----GATYLF 489



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 153/342 (44%), Gaps = 5/342 (1%)

Query: 8   PAEASYLFHNIAEKNI-VSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLP 66
           P  A Y    I  ++  V  N ++ ++A+  + L+ L             +S TL+ VL 
Sbjct: 48  PPGARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLK 107

Query: 67  ACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEV 124
           AC        G+++H   ++ G +  ++    +L DMY KCG +     VF  +  ++ V
Sbjct: 108 ACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVV 167

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           ++  L+ G +     SE ++LF  MR  G+  +  +F   +SA A+  A+  G+ +H  +
Sbjct: 168 TWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQS 227

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD-TA 243
           ++    + +FV NS+++ Y + G ++ A  +F+ +  +D  SWNTL+ G   L E +  A
Sbjct: 228 VKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGL-QLNECELEA 286

Query: 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303
           + LF   R         +Y  ++  C++   +   ++    +       T      + D 
Sbjct: 287 LQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADA 346

Query: 304 LGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
             + G + DA+ +        +   W A++  C   G++ L 
Sbjct: 347 YSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 1/111 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++      A  +F    ++++VSWN+M++ +AQ+   +KA++  R+M       + VT
Sbjct: 546 MYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVT 605

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLN 110
              V+  C     +  G++    ++R   +N  +     + D+Y++ G L+
Sbjct: 606 FLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLD 656


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 144/411 (35%), Positives = 241/411 (58%), Gaps = 3/411 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A  +F  +  +N VSWNAM+  +A N    +A+ L   M          ++
Sbjct: 164 YCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASV 223

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI--S 119
              L AC    +L   + +H  ++R GL+ ++ +TNAL   YAKC   +LA  VFN   +
Sbjct: 224 LAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGN 283

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  +S+N +I+G++Q     ++  LF+ M+L  ++ D  + +  I A A+++   Q + 
Sbjct: 284 KKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARW 343

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG +IR  L   ++V  +++D Y++ GR+ +A ++FD    +   +WN +I GYG  G 
Sbjct: 344 IHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGF 403

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LFE M+  G   +  +++++L ACSH GLV++G+KYF  M+ D  ++P   HY 
Sbjct: 404 GQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYG 463

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            MVDLLGRAG +++A   IKN+P+EP  +++GA+LGAC+++ NVEL   +A+ +F L P+
Sbjct: 464 TMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPE 523

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
              Y++LL+N+YA A  W + ++VR  M+ +  +K PG S +Q ++EV  F
Sbjct: 524 EGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTF 574



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 122/228 (53%), Gaps = 3/228 (1%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P   T T +L  CA    L  G+ +HA++  +GL  +   + AL +MY KC     A+ V
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL--GMKHDVVSFMGAISACANLA 172
           F+ +  RD V++N ++ GY++    S ++     M+    G + D V+ +  + ACA+  
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           A+   +E+H   +R  L   + V+ ++LD Y + G ++ A  +FDC+PV++S SWN +I 
Sbjct: 134 ALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMID 193

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
           GY   G    A+ LF  M ++GV     S +A L AC   G +++ ++
Sbjct: 194 GYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRR 241



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  R + A  LF +  ++++++WNAM+  +  +     A++L  EM      PN  T
Sbjct: 366 MYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETT 425

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLA 112
             +VL AC+    +  G++  A + +  GL   +     + D+  + G L+ A
Sbjct: 426 FLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEA 478


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 249/441 (56%), Gaps = 28/441 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNR-LELKALQLVREMPIHNE-FP 56
           MYA + + + A  +F  + E  + +  WNAM+  +AQ+  ++ +A++L   M       P
Sbjct: 305 MYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAP 364

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           +  T+  VLPACAR       + +H  ++++ +  + F+ NAL DMYA+ G ++ A  +F
Sbjct: 365 SETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIF 424

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-----------GMKHDV------ 158
             I  RD VS+N LI G       SE+  L  EM+L            G    V      
Sbjct: 425 AMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCM 484

Query: 159 ---VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
              ++ M  +  CA LAA  +GKEIHG  +R  L + L V ++++D Y + G + LA  +
Sbjct: 485 PNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAV 544

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGL 274
           FD LP ++  +WN LI+ YGM G  D A+ LF+ M  +G    + V++IA L ACSH GL
Sbjct: 545 FDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGL 604

Query: 275 VEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGAL 332
           V++G + F  M+ D   +PT   +AC+VD+LGRAG +++A  +I ++ P E   + W  +
Sbjct: 605 VDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTM 664

Query: 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392
           LGACR++ NV+LG  AAE LF L+P    +Y+LL N+Y+ AG W+ +++VR +M+ R   
Sbjct: 665 LGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVA 724

Query: 393 KNPGCSWVQTRDEVQDFVVND 413
           K PGCSW++    +  F+  +
Sbjct: 725 KEPGCSWIELDGAIHRFMAGE 745



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 135/259 (52%), Gaps = 8/259 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEK--NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MYA+     +A  LF +      ++V+WN M++   Q     +A+Q++ +M      P+ 
Sbjct: 201 MYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDG 260

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           VT  + LPAC+R   L  G+E+HA +++   L  + F+ +AL DMYA    ++ A+ VF+
Sbjct: 261 VTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFD 320

Query: 118 I---SFRDEVSYNILIVGYSQTSDC-SESLSLFSEMRL-LGMKHDVVSFMGAISACANLA 172
           +     R    +N +I GY+Q      E++ LFS M    G      +  G + ACA   
Sbjct: 321 MVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSE 380

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
                + +HG  +++ + ++ FV N+++D Y R GR+D A+ IF  + ++D  SWNTLI 
Sbjct: 381 VFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLIT 440

Query: 233 GYGMLGEVDTAINLFEAMR 251
           G  + G +  A  L   M+
Sbjct: 441 GCIVQGLISEAFQLVREMQ 459



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 163/335 (48%), Gaps = 19/335 (5%)

Query: 21  KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA----RGHFLRP 76
           ++ VS+N++++     R    AL  +R+M   +E  +S TL +VL AC+    +GH  R 
Sbjct: 116 RDAVSYNSLISALCLFRRWGHALDALRDMLADHEV-SSFTLVSVLLACSHLADQGH--RL 172

Query: 77  GKEIHARIIRKGL---NFDLFLTNALTDMYAKCGCLNLAQNVFNIS---FRDEVSYNILI 130
           G+E HA  ++ G      + F  NAL  MYA+ G ++ AQ +F  S     D V++N +I
Sbjct: 173 GREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMI 232

Query: 131 VGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR-KHL 189
               Q   C E++ +  +M  LG++ D V+F  A+ AC+ L  +  G+E+H   ++   L
Sbjct: 233 SLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDL 292

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNTLILGYGMLGEVD-TAINL 246
             + FVA++++D Y  + ++  A ++FD +P   +    WN +I GY   G +D  AI L
Sbjct: 293 AANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIEL 352

Query: 247 FEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           F  M  E G      +   +L AC+   +    +     +    +         ++D+  
Sbjct: 353 FSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYA 412

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           R G M++A  +   + +  D   W  L+  C + G
Sbjct: 413 RLGRMDEAHTIFAMIDLR-DIVSWNTLITGCIVQG 446



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 151/371 (40%), Gaps = 59/371 (15%)

Query: 75  RPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVFNIS---FRDEVSYNIL 129
           R  + IH   +R+ L       ++NAL   YA+CG L+ A  +F  +    RD VSYN L
Sbjct: 65  RSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALALFAATPPDLRDAVSYNSL 124

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF--MGAISACANLA--AIKQGKEIHGVTI 185
           I           +L    +M      H+V SF  +  + AC++LA    + G+E H   +
Sbjct: 125 ISALCLFRRWGHALDALRDML---ADHEVSSFTLVSVLLACSHLADQGHRLGREAHAFAL 181

Query: 186 RKHL---HTHLFVANSILDFYTRSGRIDLANKIF--DCLPVKDSASWNTLILGYGMLGEV 240
           +          F  N++L  Y R G +D A ++F      V D  +WNT+I      G  
Sbjct: 182 KHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRC 241

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF------DEMQADSVKPTE 294
           + A+ +   M   GV  D V++ + L ACS   L+  G++        D++ A+S   + 
Sbjct: 242 EEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASA 301

Query: 295 M--HYAC------------MVDLLGR---------------AGLMEDAVKLIKNLPVE-- 323
           +   YA             MV   GR                G+ E+A++L   +  E  
Sbjct: 302 LVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAG 361

Query: 324 --PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWDEA 379
             P       +L AC     V  G  A     + +      ++   L +MYA  G+ DEA
Sbjct: 362 CAPSETTMAGVLPAC-ARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEA 420

Query: 380 SKVRELMKSRE 390
             +  ++  R+
Sbjct: 421 HTIFAMIDLRD 431



 Score = 44.7 bits (104), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 14/165 (8%)

Query: 164 AISACANLAAIKQGKEIHGVTIRKHL--HTHLFVANSILDFYTRSGRIDLANKIFDCLP- 220
           AI + A L   +  + IHG ++R+ L       V+N++L  Y R G +D A  +F   P 
Sbjct: 54  AIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALALFAATPP 113

Query: 221 -VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
            ++D+ S+N+LI    +      A++    M  D       + +++L ACSH  L ++G 
Sbjct: 114 DLRDAVSYNSLISALCLFRRWGHALDALRDMLADH-EVSSFTLVSVLLACSH--LADQGH 170

Query: 280 KYFDEMQADSVK-------PTEMHYACMVDLLGRAGLMEDAVKLI 317
           +   E  A ++K            +  ++ +  R GL++DA +L 
Sbjct: 171 RLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLF 215


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 139/384 (36%), Positives = 223/384 (58%), Gaps = 2/384 (0%)

Query: 29  MVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKG 88
           M   +++N    +AL +  EM  +   P +   +  L ACA    L  G+ +HA++++  
Sbjct: 1   MAIGYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSS 60

Query: 89  LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
              D  + N L  +Y +C C N    VF+ +  R+  S+N LI G+ +     E+L +F 
Sbjct: 61  EGPDQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFR 120

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
            M+  GM    V+    +  CA + A+  GKEIH   ++      + V NS++D Y + G
Sbjct: 121 RMQREGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCG 180

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
            +D   ++FD +  KD  SWNT++ GY + G +  A++LF  M   G+  D V++IA+L+
Sbjct: 181 VVDYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLS 240

Query: 268 ACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
            CSH GL E G+K F  M+ D  V P+  HYAC+VD+LGRAG ++ A+ ++KN+P++   
Sbjct: 241 GCSHAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSG 300

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
           +IWG+LL +CR++  V L    A  LF L+P + G Y++LSN+YA AG WD  + VRE+M
Sbjct: 301 SIWGSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAGMWDSVNMVREMM 360

Query: 387 KSREAKKNPGCSWVQTRDEVQDFV 410
           ++R  +K  GCSW+Q ++++  FV
Sbjct: 361 QTRRIRKEAGCSWIQVKNKIHSFV 384



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 152/294 (51%), Gaps = 4/294 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y +     E   +F  + E+N+ SWN++++ F +     +AL + R M       + VT
Sbjct: 74  LYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVT 133

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           LT +LP CAR   L  GKEIHA+I++     D+ + N+L DMY KCG ++  + +F+ + 
Sbjct: 134 LTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMR 193

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D  S+N ++ GY+       ++ LF+EM   G++ D V+F+  +S C++    + G++
Sbjct: 194 SKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQK 253

Query: 180 I-HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGML 237
           + H + +   +   L     ++D   R+GRID A  +   +P+K S S W +L+    + 
Sbjct: 254 LFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCRLH 313

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
            EV  A  +   + E    Y+P +Y+ +    ++ G+ +      + MQ   ++
Sbjct: 314 NEVPLAEAIANRLFELE-PYNPGNYVMLSNIYANAGMWDSVNMVREMMQTRRIR 366


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 146/423 (34%), Positives = 242/423 (57%), Gaps = 13/423 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVS------WNAMVANFAQNRLELKALQLVREMPIHNE 54
           MY+K     +A  +F    + N ++      WNAM++ ++Q+    +AL+L  +M  +  
Sbjct: 366 MYSKCGSLHDARSVF----DTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGI 421

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF-LTNALTDMYAKCGCLNLAQ 113
             +  T  +V  A A    L+ G+ +H  +++ GL+  +  + NA+ D Y+KCG L   +
Sbjct: 422 TSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVR 481

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
            VF+ +  RD VS+  L+  YSQ+S   E+L+ F  MR  G   +  +F   + +CA+L 
Sbjct: 482 KVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLC 541

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
            ++ G+++HG+  +  L T   + ++++D Y + G I  A K+FD +   D  SW  +I 
Sbjct: 542 FLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIIS 601

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVK 291
           GY   G V+ A+ LF  M   G+  + V+ + +L ACSHGG+VE+G  YF +M+    V 
Sbjct: 602 GYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVV 661

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
           P   HYAC++DLLGR G ++DA++ I+ +P+EP+  +W  LLG CR++GNVELG  AA  
Sbjct: 662 PEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARK 721

Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           +  ++P++   Y+LLSN Y E G +++   +R +MK +  KK PG SW+  +  V  F  
Sbjct: 722 ILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYS 781

Query: 412 NDR 414
            D+
Sbjct: 782 GDQ 784



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 177/347 (51%), Gaps = 5/347 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     ++ ++F+ + E N VSWNAM++    N L L+A  L   M      PN  T
Sbjct: 265 MYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYT 324

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L +V  A  +   +  GKE+       G+  ++ +  AL DMY+KCG L+ A++VF+ +F
Sbjct: 325 LVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNF 384

Query: 121 RD---EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
            +      +N +I GYSQ+    E+L L+ +M   G+  D+ ++    +A A   +++ G
Sbjct: 385 INCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFG 444

Query: 178 KEIHGVTIRKHLHTHLF-VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           + +HG+ ++  L   +  V N+I D Y++ G ++   K+FD +  +D  SW TL+  Y  
Sbjct: 445 RVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQ 504

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
               + A+  F  MRE+G   +  ++ ++L +C+    +E G++    +    +   +  
Sbjct: 505 SSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCI 564

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            + ++D+  + G + +A K+   +   PD   W A++     +G VE
Sbjct: 565 ESALIDMYAKCGSITEAGKVFDKIS-NPDIVSWTAIISGYAQHGLVE 610



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 182/426 (42%), Gaps = 49/426 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K S    A  +F  + ++N+ SW  M+    ++ L     +   EM      P+   
Sbjct: 164 VYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFA 223

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            + ++ +C     L  GK +HA+I+ +G    +F++ +L +MYAK G +  +  VFN ++
Sbjct: 224 YSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMT 283

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             ++VS+N +I G +      E+  LF  M+      ++ + +    A   L  +  GKE
Sbjct: 284 EHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKE 343

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC--LPVKDSASWNTLILGYGML 237
           +        +  ++ V  +++D Y++ G +  A  +FD   +    +  WN +I GY   
Sbjct: 344 VQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQS 403

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HG-------------- 272
           G    A+ L+  M ++G+  D  +Y ++  A +           HG              
Sbjct: 404 GCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSV 463

Query: 273 -----------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK---LIK 318
                      G +E  +K FD M+   +    + +  +V    ++ L E+A+    L++
Sbjct: 464 NNAIADAYSKCGFLEDVRKVFDRMEERDI----VSWTTLVTAYSQSSLGEEALATFCLMR 519

Query: 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--LKPQHCGYYILLSNMYAEAGKW 376
                P+   + ++L +C     +E G      L    L  + C    L+ +MYA+ G  
Sbjct: 520 EEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALI-DMYAKCGSI 578

Query: 377 DEASKV 382
            EA KV
Sbjct: 579 TEAGKV 584



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 127/279 (45%), Gaps = 8/279 (2%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFD----LFLTNALTDMYAKCGCLNLAQNVF 116
           L +VL  CA    +R  K +H  +++   NF+    + L N    +Y+KC     A  VF
Sbjct: 121 LIDVLRDCAEKGSIREAKAVHGLVLKS--NFEDKDLMVLFNHAAHVYSKCSEFRAACGVF 178

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           + +  R+  S+ ++IVG ++     +    F EM   G+  D  ++   I +C  L +++
Sbjct: 179 DEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLE 238

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK +H   + +   TH+FV+ S+L+ Y + G I+ +  +F+ +   +  SWN +I G  
Sbjct: 239 LGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCT 298

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G    A +LF  M+      +  + +++  A      V  GK+  +      ++   +
Sbjct: 299 SNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVL 358

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI-WGALL 333
               ++D+  + G + DA  +     +    N  W A++
Sbjct: 359 VGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMI 397



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 78/188 (41%), Gaps = 3/188 (1%)

Query: 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH--LFVANSILDFYTRSGRIDLA 212
           +  V   +  +  CA   +I++ K +HG+ ++ +      + + N     Y++      A
Sbjct: 115 QTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAA 174

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
             +FD +P ++  SW  +I+G    G        F  M   G+  D  +Y AI+ +C   
Sbjct: 175 CGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGL 234

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
             +E GK    ++              ++++  + G +ED+   + N+  E +   W A+
Sbjct: 235 DSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSY-WVFNMMTEHNQVSWNAM 293

Query: 333 LGACRIYG 340
           +  C   G
Sbjct: 294 ISGCTSNG 301


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 149/417 (35%), Positives = 236/417 (56%), Gaps = 37/417 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    +EA  +   ++ +++VSWN++VA +AQN+    AL++ REM       ++ T
Sbjct: 185 MYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGT 244

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD--MYAKCGCLNLAQNVFNI 118
           + ++LPA                           ++N  T+  MY K          F +
Sbjct: 245 MASLLPA---------------------------VSNTTTENVMYVK-------DMFFKM 270

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +  VS+N++I  Y + +   E++ L+S M   G + D VS    + AC + +A+  GK
Sbjct: 271 GKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGK 330

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IHG   RK L  +L + N+++D Y + G +D A  +F+ +  +D  SW  +I  YG  G
Sbjct: 331 KIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSG 390

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A+ LF  M++ G+  D ++++  L ACSH GL+E+G+  F  M     + P   H 
Sbjct: 391 RGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHL 450

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACMVDLLGRAG +++A K I+ +P+EP+  +WGALLGACR++ N ++G  AA+ LF L P
Sbjct: 451 ACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAP 510

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +  GYY+LLSN+YA+AG+W+E + +R +MKS+  KKNPG S V+    +  F+V DR
Sbjct: 511 EQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDR 567



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 149/324 (45%), Gaps = 11/324 (3%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           L+  + +H+RII + L ++  L   L   YA    +  A+ VF+ I  R+ +  N++I  
Sbjct: 56  LKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRS 115

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y       E + +F  M    +K D  +F   + AC+    I  GK+IHG   +  L + 
Sbjct: 116 YVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSST 175

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           LFV N ++  Y + G +  A  + D +  +D  SWN+L+ GY      D A+ +   M  
Sbjct: 176 LFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMES 235

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
             + +D  +  ++L A S+     +   Y  +M     K + + +  M+ +  +  +  +
Sbjct: 236 VKISHDAGTMASLLPAVSN--TTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVE 293

Query: 313 AVKLIKNLPV---EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---L 366
           AV+L   +     EPDA    ++L AC     + LG     H ++ + +     +L   L
Sbjct: 294 AVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKI--HGYIERKKLIPNLLLENAL 351

Query: 367 SNMYAEAGKWDEASKVRELMKSRE 390
            +MYA+ G  D A  V E MKSR+
Sbjct: 352 IDMYAKCGCLDRARDVFENMKSRD 375


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 148/439 (33%), Positives = 248/439 (56%), Gaps = 33/439 (7%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
            EA  LF  + EK++V+W+A++A F QN +  +A++    M       + V   + L AC
Sbjct: 192 VEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSAC 251

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF-------- 120
           A    +  GK IH+  ++ G    + L NAL  MY+KCG + +A+ +F+ ++        
Sbjct: 252 ANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWN 311

Query: 121 ------------------------RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH 156
                                   +D VS++ +I GY+Q     E+L+LF EM++ G K 
Sbjct: 312 SMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKP 371

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
           D  + +  ISACA LAA++QGK +H    R  L  ++ +  +++D Y + G ++ A ++F
Sbjct: 372 DETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVF 431

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
             +  K  ++WN LILG  M G V++++++F  M++  V  + ++++ +L AC H GLV+
Sbjct: 432 YGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVD 491

Query: 277 KGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +G+ +F  M  D  ++P   HY CMVDLLGRAG +++A +L+  +P+ PD   WGALLGA
Sbjct: 492 EGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGA 551

Query: 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395
           C+ +G+ E+G      L  L+P H G+++LLSN+YA  GKWD+  ++R +M      K P
Sbjct: 552 CKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIP 611

Query: 396 GCSWVQTRDEVQDFVVNDR 414
           GCS ++    + +F+  D+
Sbjct: 612 GCSMIEANGVIHEFLAGDK 630



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 126/233 (54%), Gaps = 3/233 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K +    A  +F ++ EK++VSW++M++ +AQN L  + L L +EM +    P+  TL
Sbjct: 317 YLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTL 376

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR 121
            +V+ ACAR   L  GK +HA I R GL  ++ L   L DMY KCGC+  A  VF     
Sbjct: 377 VSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIE 436

Query: 122 DEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
             +S +N LI+G +       SL +FS M+   +  + ++FMG + AC ++  + +G+  
Sbjct: 437 KGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHH 496

Query: 181 HGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
               I  H +  ++     ++D   R+G++  A ++ + +P+  D A+W  L+
Sbjct: 497 FYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALL 549



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 155/363 (42%), Gaps = 67/363 (18%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F+ I   N   WN M+  + Q      A  L + M  +    ++ T   ++ AC+    
Sbjct: 34  IFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRS 93

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
               K++H  +++ G + D+++ N L + ++ C  +  A  VFN  S  D VS+N ++ G
Sbjct: 94  EWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAG 153

Query: 133 YSQTSDCSESLSLFSEMR------------LLGMKHDVV--------------------- 159
           Y +  +  E+  ++ +M             L GM+  VV                     
Sbjct: 154 YIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALI 213

Query: 160 --------------SFMG---------------AISACANLAAIKQGKEIHGVTIRKHLH 190
                         +F+G               A+SACANL  +  GK IH ++++    
Sbjct: 214 ACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTE 273

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
           +++ + N+++  Y++ G I +A K+FD   + D  SWN++I GY     VD A  +F++M
Sbjct: 274 SYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSM 333

Query: 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
            E     D VS+ ++++  +   L ++    F EMQ    KP E     ++    R   +
Sbjct: 334 PEK----DVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAAL 389

Query: 311 EDA 313
           E  
Sbjct: 390 EQG 392



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 109/225 (48%), Gaps = 17/225 (7%)

Query: 109 LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
           ++  + +FN I   +   +N++I  Y QT+    + +L+  M    +  D  ++   I A
Sbjct: 28  IDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQA 87

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C+   +  + K++H   ++    + ++V N++++ ++    +  A ++F+   V DS SW
Sbjct: 88  CSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSW 147

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-Q 286
           N+++ GY  +G V+ A +++  M E  +    ++  +++      GLV +  K FDEM +
Sbjct: 148 NSILAGYIEIGNVEEAKHIYHQMPERSI----IASNSMIVLFGMRGLVVEACKLFDEMLE 203

Query: 287 ADSV---------KPTEMHYACMVDLLG--RAGLMEDAVKLIKNL 320
            D V         +  EM+   +   +G  + G+M D V  +  L
Sbjct: 204 KDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSAL 248



 Score = 44.7 bits (104), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F+ + EK I +WNA++   A N L   +L +   M   +  PN +T
Sbjct: 417 MYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEIT 476

Query: 61  LTNVLPACARGHFLRPGK-EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
              VL AC     +  G+   ++ I    +  ++     + D+  + G L  A+ + N
Sbjct: 477 FMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLN 534


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 148/420 (35%), Positives = 238/420 (56%), Gaps = 8/420 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A   F   ++KN ++W+AM+  +AQ+    KAL+L   M +    P+  T
Sbjct: 253 MYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFT 312

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V+ AC+       GK++H  +++ G    +++  AL DMYAKC  +  A+  F+ + 
Sbjct: 313 FVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQ 372

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V +  +I GY Q  +  ++LSL+  M + G+  + ++    + AC++LAA++QGK+
Sbjct: 373 EPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQ 432

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH  T++      + + +++   Y + G +     +F  +P +D  SWN +I G    G 
Sbjct: 433 IHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGC 492

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF----DEMQADSVKPTEM 295
              A+ LFE M+ +G   D V+++ IL+ACSH GLVE+G  YF    DE   D   P   
Sbjct: 493 GKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMD---PRVE 549

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYACMVD+L RAG +++A++  ++  ++    +W  +LGACR Y N ELGA+A E L  L
Sbjct: 550 HYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMEL 609

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
             Q    Y+LLS++Y+  G+W++  +VR +MK R   K PGCSW++ +  V  FVV D+M
Sbjct: 610 GSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSWIELKSGVHVFVVKDQM 669



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 174/357 (48%), Gaps = 14/357 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKA--LQLVREMPIHNEFPNS 58
           +YAK  R  EA ++F  I  K++VSWN ++  ++Q+     +  ++L + M   N  PN+
Sbjct: 49  LYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNA 108

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T   V  A +       G+  HA  I+     D+F+ ++L +MY K G    A+ VF+ 
Sbjct: 109 HTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDT 168

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  R+ VS+  +I GY+     +E+L LF  MR      +   F   +SA      +  G
Sbjct: 169 MPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNG 228

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K+IH + ++  L + + V N+++  Y + G +D A + F+    K+S +W+ +I GY   
Sbjct: 229 KQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQS 288

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G+ D A+ LF +M   G+     +++ ++ ACS  G   +GK+  D +     +      
Sbjct: 289 GDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVM 348

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG----------ACRIYGNVEL 344
             +VD+  +   + DA K    L  EPD  +W +++G          A  +YG +E+
Sbjct: 349 TALVDMYAKCSSIVDARKGFDYLQ-EPDIVLWTSMIGGYVQNGENEDALSLYGRMEM 404



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 151/308 (49%), Gaps = 7/308 (2%)

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
            P++ +    L        L+ GK +HA+II+   +  +++ N+L ++YAKC  L  A+ 
Sbjct: 3   LPSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSC-VYIANSLVNLYAKCQRLREAKF 61

Query: 115 VFN-ISFRDEVSYNILIVGYSQ--TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
           VF  I  +D VS+N +I GYSQ   S  S  + LF  MR      +  +F G  +A + L
Sbjct: 62  VFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTL 121

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
                G+  H V I+      +FV +S+++ Y ++G    A K+FD +P ++S SW T+I
Sbjct: 122 VDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMI 181

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
            GY        A+ LF  MR +  G +   + ++L+A +   LV  GK+       + + 
Sbjct: 182 SGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLL 241

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE--LGAWAA 349
                   +V +  + G ++DA++  +    + ++  W A++      G+ +  L  +++
Sbjct: 242 SIVSVGNALVTMYAKCGSLDDALQTFET-SSDKNSITWSAMITGYAQSGDSDKALKLFSS 300

Query: 350 EHLFMLKP 357
            HL  ++P
Sbjct: 301 MHLSGIRP 308


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 146/404 (36%), Positives = 237/404 (58%), Gaps = 2/404 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    ++A   F  +  +   SWN ++  F QN    +AL++  EM +H   P+ +T
Sbjct: 266 MYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGIT 325

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +VL ACA+   LR G  +H+ I   G+  D  LTN+L +MYAKCG +  A+ VF  ++
Sbjct: 326 LVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMT 385

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+ +++ GY +    + + +LF EM++  +    ++ +  +SAC+ L A+ +G+E
Sbjct: 386 KKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGRE 445

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH      ++   L + ++++D Y + G ID A++IF  +  K + SWN +I G    G 
Sbjct: 446 IHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGY 505

Query: 240 VDTAINLFEAMRE-DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
              A+ LF+ M E      D ++  A+L AC+H G+V++G +YF  M +  V P   HY 
Sbjct: 506 GKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHYG 565

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGRAG++++A   IK +P+EP+  IWG+LL ACR++  ++LG    +H+  + P 
Sbjct: 566 CIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPN 625

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQT 402
             G ++L+SN++AE  +WD+   VR LM SR  +K PG S VQ 
Sbjct: 626 DVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSSVQV 669



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 175/327 (53%), Gaps = 2/327 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EAS +F  + E+++VSW +M++  AQ     K L+++ EM      PN VT+ ++L AC 
Sbjct: 174 EASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACG 233

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
           +   +  G+ ++ ++ + G+  D+ + NAL  MY KCGCL+ A   F  +  R   S+N 
Sbjct: 234 QTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNT 293

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           LI G+ Q  +  E+L +F EM L G+  D ++ +  +SACA L  +++G  +H       
Sbjct: 294 LIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNG 353

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           +     + NS+++ Y + G +  A ++F  +  KD  SW  ++ GY    +   A NLFE
Sbjct: 354 ICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFE 413

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            M+   V    ++ +++L+ACS  G ++KG++    ++  +V       + +VD+  + G
Sbjct: 414 EMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCG 473

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGA 335
            ++ A ++ + +  +   + W A++G 
Sbjct: 474 CIDTASEIFRKMQHKQTLS-WNAMIGG 499



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 157/327 (48%), Gaps = 5/327 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F  +A+ N   WN M+  ++       AL + REM      P++ T+  V+ A A 
Sbjct: 71  ARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAA 130

Query: 71  GHFLR---PGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF-RDEVSY 126
              L+    G  IHA + R G   D+F+ + L + Y     +  A  VF   + RD VS+
Sbjct: 131 FAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSW 190

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
             +I   +Q     + L + SEM+  G+  + V+ +  +SAC    A+ +G+ ++    +
Sbjct: 191 TSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGK 250

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
             +   + + N+++  YT+ G +  A + F  +P + + SWNTLI G+    E   A+ +
Sbjct: 251 FGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRI 310

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
           FE M   GV  D ++ +++L+AC+  G + KG      ++ + +    +    ++++  +
Sbjct: 311 FEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAK 370

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALL 333
            G M  A ++ + +  + D   W  ++
Sbjct: 371 CGDMAAAERVFQTM-TKKDVVSWTVMV 396



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 120/286 (41%), Gaps = 59/286 (20%)

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY-TRSGRIDL- 211
           ++H +++++ A ++ A+LA      E+HG  +R HL +  FVA  ++    + + R D+ 
Sbjct: 16  IRHHLLAYLDACASRAHLA------ELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMR 69

Query: 212 -ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI----- 265
            A K+FD +   ++  WN +I GY        A+ +F  MR  GV  D  +  A+     
Sbjct: 70  YARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASA 129

Query: 266 ----LTACSHG--------------------GL---------VEKGKKYFDEM-QADSVK 291
               L   S+G                    GL         VE+  K F+EM + D V 
Sbjct: 130 AFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVS 189

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE---PDANIWGALLGACRIYGNVELGAWA 348
            T M  AC      + G  +  +K++  +  E   P+     +LL AC     V+ G W 
Sbjct: 190 WTSMISAC-----AQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWV 244

Query: 349 AEHL--FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392
              +  F ++        L+S MY + G   +A +  + M +R  K
Sbjct: 245 YNQVGKFGIEADVDIRNALIS-MYTKCGCLSDALEAFQAMPARYTK 289


>gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22150, chloroplastic; Flags: Precursor
 gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 820

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/421 (34%), Positives = 256/421 (60%), Gaps = 8/421 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++     ++  +F ++ E+++VSWN M++ F QN L+ + L LV EM       + +T
Sbjct: 362 MYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYIT 421

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           +T +L A +       GK+ HA +IR+G+ F+  + + L DMY+K G + ++Q +F  S 
Sbjct: 422 VTALLSAASNLRNKEIGKQTHAFLIRQGIQFE-GMNSYLIDMYSKSGLIRISQKLFEGSG 480

Query: 121 ---RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              RD+ ++N +I GY+Q     ++  +F +M    ++ + V+    + AC+ + ++  G
Sbjct: 481 YAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLG 540

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K++HG +IR++L  ++FVA++++D Y+++G I  A  +F     ++S ++ T+ILGYG  
Sbjct: 541 KQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQH 600

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMH 296
           G  + AI+LF +M+E G+  D ++++A+L+ACS+ GL+++G K F+EM +  +++P+  H
Sbjct: 601 GMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEH 660

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVELGAWAAEHL--F 353
           Y C+ D+LGR G + +A + +K L  E + A +WG+LLG+C+++G +EL    +E L  F
Sbjct: 661 YCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKF 720

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
                  GY +LLSNMYAE  KW    KVR  M+ +  KK  G S ++    V  FV  D
Sbjct: 721 DKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRD 780

Query: 414 R 414
           +
Sbjct: 781 Q 781



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 196/420 (46%), Gaps = 43/420 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MYA+      +  +F +  E+NI  WN M+  + QN   +++++L  E     E   + V
Sbjct: 260 MYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEV 319

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T      A +    +  G++ H  + +      + + N+L  MY++CG ++ +  VF ++
Sbjct: 320 TYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSM 379

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD VS+N +I  + Q     E L L  EM+  G K D ++    +SA +NL   + GK
Sbjct: 380 RERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGK 439

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD--CLPVKDSASWNTLILGYGM 236
           + H   IR+ +     + + ++D Y++SG I ++ K+F+      +D A+WN++I GY  
Sbjct: 440 QTHAFLIRQGIQFE-GMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQ 498

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK----------------- 279
            G  +    +F  M E  +  + V+  +IL ACS  G V+ GK                 
Sbjct: 499 NGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFV 558

Query: 280 --------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---V 322
                         KY ++M + + +   + Y  M+   G+ G+ E A+ L  ++    +
Sbjct: 559 ASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGI 618

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHL---FMLKPQHCGYYILLSNMYAEAGKWDEA 379
           +PDA  + A+L AC   G ++ G    E +   + ++P    +Y  +++M    G+ +EA
Sbjct: 619 KPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSS-EHYCCITDMLGRVGRVNEA 677



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 162/337 (48%), Gaps = 10/337 (2%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F N+  KN+V+WN +++ + +     +A +    M      P+ V+  NV PA +    
Sbjct: 170 VFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRS 229

Query: 74  LRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILI 130
           ++     +  +++ G  +  DLF+ ++   MYA+ G +  ++ VF+      +  +N +I
Sbjct: 230 IKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMI 289

Query: 131 VGYSQTSDCSESLSLFSEMRLLGMKH---DVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
             Y Q     ES+ LF E   +G K    D V+++ A SA + L  ++ G++ HG   + 
Sbjct: 290 GVYVQNDCLVESIELFLEA--IGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKN 347

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                + + NS++  Y+R G +  +  +F  +  +D  SWNT+I  +   G  D  + L 
Sbjct: 348 FRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLV 407

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
             M++ G   D ++  A+L+A S+    E GK+    +    ++   M+ + ++D+  ++
Sbjct: 408 YEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEGMN-SYLIDMYSKS 466

Query: 308 GLMEDAVKLIKNLP-VEPDANIWGALLGACRIYGNVE 343
           GL+  + KL +     E D   W +++      G+ E
Sbjct: 467 GLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTE 503



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 134/286 (46%), Gaps = 12/286 (4%)

Query: 8   PAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN--SVTLTNVL 65
           P  A  LF  I +   V WN ++  F  N L  +AL     M     F N  + T ++ L
Sbjct: 55  PQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSSTL 114

Query: 66  PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC----GCL--NLAQNVF-NI 118
            ACA    L+ GK +H  +IR   N    + N+L +MY  C     C   ++ + VF N+
Sbjct: 115 KACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFDNM 174

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             ++ V++N LI  Y +T   +E+   F  M  + +K   VSF+    A +   +IK+  
Sbjct: 175 RRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKKAN 234

Query: 179 EIHGVTIR--KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
             +G+ ++        LFV +S +  Y   G I+ + ++FD    ++   WNT+I  Y  
Sbjct: 235 VFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQ 294

Query: 237 LGEVDTAINLF-EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
              +  +I LF EA+    +  D V+Y+   +A S    VE G+++
Sbjct: 295 NDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQF 340



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 12/239 (5%)

Query: 107 GCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMG 163
           G   LA+ +F+ I     V +N +I+G+   +   E+L  +S M+        D  ++  
Sbjct: 53  GNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSS 112

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS------GRIDLANKIFD 217
            + ACA    +K GK +H   IR   ++   V NS+++ Y            D+  K+FD
Sbjct: 113 TLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFD 172

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            +  K+  +WNTLI  Y   G    A   F  M    V   PVS++ +  A S    ++K
Sbjct: 173 NMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKK 232

Query: 278 GKKYFDEM--QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
              ++  M    D         +  + +    G +E + ++  +  VE +  +W  ++G
Sbjct: 233 ANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSC-VERNIEVWNTMIG 290


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 151/421 (35%), Positives = 248/421 (58%), Gaps = 12/421 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVRE-MPIHNEFPNSV 59
           MY K+    +A  +F  + ++N+ +WNA ++N  Q+R  L A+   +E + +H E PNS+
Sbjct: 152 MYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGE-PNSI 210

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI- 118
           T    L AC     L  G+++HA I+R G   D+ + N L D Y KCG +  A+ VFN  
Sbjct: 211 TFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRI 270

Query: 119 -SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM--GAISACANLAAIK 175
            + ++ VS+  ++    Q  +   +  +F + R    + +   FM    +SACA L  ++
Sbjct: 271 GNRKNVVSWCSMLAALVQNHEEERACMVFLQAR---KEVEPTDFMISSVLSACAELGGLE 327

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G+ +H + ++  +  ++FV ++++D Y + G I+ A ++F  LP ++  +WN +I GY 
Sbjct: 328 LGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYA 387

Query: 236 MLGEVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKP 292
             G++D A+ LFE M     G  P  V+ I+IL+ CS  G VE+G + F+ M+ +  ++P
Sbjct: 388 HQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEP 447

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
              H+AC+VDLLGR+GL++ A + I+N+ ++P  ++WGALLGACR++G  ELG  AAE L
Sbjct: 448 GAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKL 507

Query: 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVN 412
           F L     G +++LSNM A AG+W+EA+ VR+ MK    KKN G SW+  ++ +  F   
Sbjct: 508 FELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAK 567

Query: 413 D 413
           D
Sbjct: 568 D 568



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 184/395 (46%), Gaps = 13/395 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A ++      + +V+W ++++    NR  L AL     M   N  PN  T
Sbjct: 51  MYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFT 110

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V  A A       GK+IH   ++ G+ +D+F+  +  DMY K G    A N+F+ + 
Sbjct: 111 FPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMP 170

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+  ++N  I    Q     +++  F E   +  + + ++F   ++AC ++  +  G++
Sbjct: 171 QRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQ 230

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLILGYGMLG 238
           +H   +R      + VAN ++DFY + G I  A  +F+ +   K+  SW +++       
Sbjct: 231 LHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNH 290

Query: 239 EVDTAINLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
           E + A  +F   R++    +P  ++  ++L+AC+  G +E G+          V+     
Sbjct: 291 EEERACMVFLQARKE---VEPTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFV 347

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM-- 354
            + +VD+ G+ G +E+A ++   LP E +   W A++G     G++++     E + +  
Sbjct: 348 GSALVDMYGKCGSIENAEQVFSELP-ERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGS 406

Query: 355 --LKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
             ++P +     +LS + +  G  +   ++ E M+
Sbjct: 407 HGIRPSYVTLISILS-VCSRVGAVERGIQIFESMR 440



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 121/277 (43%), Gaps = 2/277 (0%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLN-FDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           L ++L +    H    G+ IHA IIR  +     FL+N L +MY+K   LN AQ+V +++
Sbjct: 9   LGSLLESAVSTHCSILGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLT 68

Query: 120 -FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R  V++  LI G         +L  F+ MR   ++ +  +F     A A +     GK
Sbjct: 69  HLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGK 128

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IHG+ ++  +   +FV  S  D Y ++G    A  +FD +P ++ A+WN  I       
Sbjct: 129 QIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDR 188

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
               AI  F+         + +++ A L AC     +  G++    +     K       
Sbjct: 189 RSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVAN 248

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            ++D  G+ G +  A  +   +    +   W ++L A
Sbjct: 249 GLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAA 285


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 148/419 (35%), Positives = 240/419 (57%), Gaps = 4/419 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKN--IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY K    AEA  +F  I EKN  ++SWN ++  + QN L  +AL L + M +     N 
Sbjct: 68  MYGKCGGIAEARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQ 127

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           VTL N + ACA       G+ +HA  + K L  D  +  +L +M+ KC  ++ A+ VF+ 
Sbjct: 128 VTLINAIDACASLPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDS 187

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  ++ V++N ++  YSQ   C +++ +F  M L G++ D V+F+  I ACA LAA  +G
Sbjct: 188 LPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEG 247

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + +H       +   + +  +++ FY + GR+D A  IFD L  K++ +W+ ++  Y   
Sbjct: 248 RMVHDDITASGIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQN 307

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G    AI L+  M + G+  + ++++ +L ACSH G    G  YF  M  D  V P   H
Sbjct: 308 GYETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEH 367

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y  ++DLLGR+G ++ +  LI ++P EPD++ W ALLGACR++G+V+ GA  AE ++ L 
Sbjct: 368 YLNLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELD 427

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           P+  G YILLSN+Y+  G+ DEA + R+ M+ R   K PG S ++ +D V +F+   ++
Sbjct: 428 PEDSGPYILLSNLYSSTGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKL 486



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 145/279 (51%), Gaps = 4/279 (1%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   +L  CA    L  GK +H+ +++ G   D  + N L +MY KCG +  A++VF+ I
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQI 85

Query: 119 SFR--DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
             +  D +S+N +I  Y+Q     E+L LF  M L G+  + V+ + AI ACA+L + ++
Sbjct: 86  QEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEE 145

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+ +H + + K L +   V  S+++ + +   +D A  +FD LP K+  +WN ++  Y  
Sbjct: 146 GRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQ 205

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
             +   AI +F  M  +GV  D V+++ I+ AC+      +G+   D++ A  +      
Sbjct: 206 NWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVAL 265

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
              ++   G+ G +++A  +  +L  + +   W A+L A
Sbjct: 266 GTAVMHFYGKCGRLDNARAIFDSLG-KKNTVTWSAILAA 303



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 82/169 (48%), Gaps = 2/169 (1%)

Query: 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANK 214
           + ++ +++  +  CA+  A+ +GK +H   ++    +   +AN +++ Y + G I  A  
Sbjct: 21  REEISTYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARS 80

Query: 215 IFDCLPVK--DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
           +FD +  K  D  SWN +I  Y   G    A++LF+ M  +GV  + V+ I  + AC+  
Sbjct: 81  VFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASL 140

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
              E+G+          ++   M    +V++ G+   ++ A  +  +LP
Sbjct: 141 PSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLP 189


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 247/451 (54%), Gaps = 42/451 (9%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM--PIHNE-------FPNSVTL 61
           AS+LF  + + N   +NAM+     N +    +   ++M     N         P+  T 
Sbjct: 39  ASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTF 98

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---- 117
             V+ ACAR      GK++HA+  + G    L   NAL DMY KC  L  A N+F+    
Sbjct: 99  PFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHE 158

Query: 118 ---ISF-------------------------RDEVSYNILIVGYSQTSDCSESLSLFSEM 149
              IS+                         R  VS+  +I GY++     ++L +F EM
Sbjct: 159 RGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREM 218

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
           ++ G++ D  S +  + ACA L A++ GK IH    R  L     + N++++ YT+ G I
Sbjct: 219 QIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCI 278

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           D A ++FD +  +D  SW+T+I G    G+V  AI +FE M++  +  + ++++ +L+AC
Sbjct: 279 DQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSAC 338

Query: 270 SHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           +H G  E+G  YFD M+ D  ++P   HY  +VDLLGRAG +  A+ +++ +P++PD+ I
Sbjct: 339 AHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKI 398

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
           WG+LL +CR + N+E+   A EHL  L+P   G Y+LLSN+YA+ GKWD+ S++R+L++S
Sbjct: 399 WGSLLSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRS 458

Query: 389 REAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
           +  KK PGCS ++  +  Q+FV  D  K ++
Sbjct: 459 KRMKKTPGCSLIEVNNVAQEFVSGDDSKPYS 489



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 139/287 (48%), Gaps = 36/287 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWN-------------------------------AM 29
           MY K     +A  LF  + E+  +SWN                               A+
Sbjct: 139 MYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAI 198

Query: 30  VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
           ++ + +    + AL + REM I    P+  ++ +VLPACA+   L  GK IH    R GL
Sbjct: 199 ISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGL 258

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                + NAL +MY KCGC++ A  +F+ +  RD +S++ +I G +      E++++F  
Sbjct: 259 LRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFER 318

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN--SILDFYTRS 206
           M+   +K + ++F+G +SACA+    ++G  ++  T++K  H    + +  S++D   R+
Sbjct: 319 MKQTNIKPNGITFVGLLSACAHAGFWEEGL-MYFDTMKKDFHIEPEIEHYGSLVDLLGRA 377

Query: 207 GRIDLANKIFDCLPVK-DSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           GR+  A  I + +P+K DS  W +L+        ++ A+   E + E
Sbjct: 378 GRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEE 424


>gi|302795736|ref|XP_002979631.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
 gi|300152879|gb|EFJ19520.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
          Length = 879

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 152/424 (35%), Positives = 239/424 (56%), Gaps = 4/424 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F ++  ++++SWN ++A   Q+    +AL L+  M +     + ++
Sbjct: 347 MYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKIS 406

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             N LP CA    L  G+ IH+ I+  G+  D+ L NA+ DMY  C   + A  VF  + 
Sbjct: 407 FVNALPLCAASEALAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMK 466

Query: 120 FRDEVSYNILIVGYS-QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            RD+VS+N +I  Y+ Q    SE+L LF +M+L G   DV+SF+ A+SACA  A++ +GK
Sbjct: 467 ARDQVSWNAMITAYAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGK 526

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H       L +++ VAN++L+ Y +SG + LA K+F  +P+ D  SWN +I  +   G
Sbjct: 527 LLHDRIRETGLESNMTVANAVLNMYAKSGSLVLARKMFGKMPLPDVISWNGMISAFAQHG 586

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPTEMH 296
             D  +  F  M  +G   + V+++++++ACSHGGLV+ G + F  +  D  ++ P   H
Sbjct: 587 HADQVLRFFRRMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEH 646

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y CMVDL+ RAG ++ A K I   P++PD  I   +LGA +++ +VE    +AEHL  L 
Sbjct: 647 YYCMVDLIARAGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELT 706

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMK 416
           P     Y++LSN+Y E GK DE +K+R LM  +  +K P  S +  +  V +F   D   
Sbjct: 707 PDRSAAYVVLSNLYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTN 766

Query: 417 TFTP 420
             TP
Sbjct: 767 ARTP 770



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 157/337 (46%), Gaps = 3/337 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K S   +A  +F  I  K +V WNAM+  +AQ     +A+Q+   M +       +T
Sbjct: 144 MYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERIT 203

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVFNI 118
              VL AC++   L   K +   +  +  +   D     AL + Y  CG L  A   F+ 
Sbjct: 204 FIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAFSR 263

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              + +    +I  Y+Q     E+L LF  M L G+K D ++ M  ++AC+    +++G+
Sbjct: 264 HRLELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGR 323

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IHG         H+   N++++ Y + G ++ A ++F  +  +D  SWNT+I  +G   
Sbjct: 324 MIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHS 383

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
           +   A++L   M+ DGV  D +S++  L  C+    + KG+     +    +K   M   
Sbjct: 384 QHPEALHLLHLMQLDGVKADKISFVNALPLCAASEALAKGRMIHSWIVESGIKADVMLDN 443

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            ++D+ G     +DA ++ + +    D   W A++ A
Sbjct: 444 AILDMYGSCKSTDDASRVFRAMKAR-DQVSWNAMITA 479



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 160/345 (46%), Gaps = 18/345 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY       +A   F  +  ++ ++W  ++    Q     +AL L R M +    P +  
Sbjct: 42  MYVDCGSLIDAKACFDRMPVQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRN 101

Query: 61  LTNVLPAC-ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
              VL AC A    L  G+ IH  +    +  D +++  L  MY KC  +  A+ VF+ I
Sbjct: 102 FVAVLGACSADPELLEEGRRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGI 161

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +  V +N +I  Y+Q     +++ +F  M L G+K + ++F+G + AC+ L  ++  K
Sbjct: 162 RHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAK 221

Query: 179 EIH-GVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            +   V  R+H H H    A ++++FY   G ++ A + F       S     LIL   M
Sbjct: 222 LVKLCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAF-------SRHRLELILATAM 274

Query: 237 LGEV------DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           + +       D A+ LF+ M  +GV  D ++ +A+L ACS    +E+G+     M+    
Sbjct: 275 ITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRMIHGFMREIRF 334

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                    ++++ G+ G +E+AV++ +++    D   W  ++ A
Sbjct: 335 DRHVNAGNALINMYGKCGSLEEAVEVFRSMQ-HRDVISWNTIIAA 378



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 130/258 (50%), Gaps = 6/258 (2%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           ++L   A    L  GKE+HARI +  ++   F+ + L  MY  CG L  A+  F+ +  +
Sbjct: 3   DLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQ 62

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC-ANLAAIKQGKEI 180
           D +++  LI  + Q  D  ++L LF  M+L G+     +F+  + AC A+   +++G+ I
Sbjct: 63  DALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRI 122

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HGV     + +  +V+ ++L  Y +   ++ A K+FD +  K    WN +I  Y      
Sbjct: 123 HGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHH 182

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY---FDEMQADSVKPTEMHY 297
           + AI +F AM  +GV  + +++I +L ACS    +E  K      +E + D +  +    
Sbjct: 183 EQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFAT 242

Query: 298 ACMVDLLGRAGLMEDAVK 315
           A +V+  G  G +E A +
Sbjct: 243 A-LVNFYGSCGDLEQAFR 259



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 83/157 (52%), Gaps = 1/157 (0%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           +   A+  ++  GKE+H    +  +    F+ + ++  Y   G +  A   FD +PV+D+
Sbjct: 5   LDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDA 64

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG-GLVEKGKKYFD 283
            +W  LI  +G +G+ + A++LF +M+ +GV     +++A+L ACS    L+E+G++   
Sbjct: 65  LTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIHG 124

Query: 284 EMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
            ++  +++        ++ + G+   +EDA K+   +
Sbjct: 125 VLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGI 161


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 151/421 (35%), Positives = 246/421 (58%), Gaps = 4/421 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F  +  +N+VSWN+M+  F +N+L  +A+ + RE  + +  P+ V+
Sbjct: 244 MYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFRE--VLSLGPDQVS 301

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +++VL ACA    L  GK++H  I+++GL   +++ N+L DMY KCG    A  +F    
Sbjct: 302 ISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGG 361

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++N++I+G  +  +  ++ + F  M   G++ D  S+     A A++AA+ QG  
Sbjct: 362 DRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTM 421

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   ++     +  +++S++  Y + G +  A ++F      +   W  +I  +   G 
Sbjct: 422 IHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGC 481

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
            + AI LFE M  +GV  + ++++++L+ACSH G ++ G KYF+ M    ++KP   HYA
Sbjct: 482 ANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYA 541

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGR G +E+A + I+++P EPD+ +WGALLGAC  + NVE+G   AE LF L+P 
Sbjct: 542 CMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPD 601

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
           + G Y+LLSN+Y   G  +EA +VR LM     +K  GCSW+  ++    F  NDR  + 
Sbjct: 602 NPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSR 661

Query: 419 T 419
           T
Sbjct: 662 T 662



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 173/344 (50%), Gaps = 8/344 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           +YAK         LF+       N+V+W  ++   +++    +AL     M     +PN 
Sbjct: 141 LYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNH 200

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T + +LPACA    L  G++IHA I +     D F+  AL DMYAKCG + LA+NVF+ 
Sbjct: 201 FTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDE 260

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  R+ VS+N +IVG+ +      ++ +F E+  LG   D VS    +SACA L  +  G
Sbjct: 261 MPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACAGLVELDFG 318

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K++HG  +++ L   ++V NS++D Y + G  + A K+F     +D  +WN +I+G    
Sbjct: 319 KQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRC 378

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE-MQADSVKPTEMH 296
              + A   F+AM  +GV  D  SY ++  A +    + +G       ++   VK + + 
Sbjct: 379 RNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRIS 438

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
            + +V + G+ G M DA ++ +    E +   W A++     +G
Sbjct: 439 -SSLVTMYGKCGSMLDAYQVFRETK-EHNVVCWTAMITVFHQHG 480



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 160/337 (47%), Gaps = 27/337 (8%)

Query: 49  MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
           +P  ++F +   L ++L   A+   L+   +IH++++    +  L   N L  +YAKCG 
Sbjct: 88  VPKFHQFSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGS 147

Query: 109 LNLAQNVFNI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI 165
           ++    +FN       + V++  LI   S+++   ++L+ F+ MR  G+  +  +F   +
Sbjct: 148 IHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAIL 207

Query: 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
            ACA+ A + +G++IH +  +       FVA ++LD Y + G + LA  +FD +P ++  
Sbjct: 208 PACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLV 267

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK--GKKYFD 283
           SWN++I+G+        AI +F  +    +G D VS  ++L+AC+  GLVE   GK+   
Sbjct: 268 SWNSMIVGFVKNKLYGRAIGVFREVLS--LGPDQVSISSVLSACA--GLVELDFGKQVHG 323

Query: 284 EMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            +    +         +VD+  + GL EDA KL      + D   W  ++  C    N E
Sbjct: 324 SIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCG-GGDRDVVTWNVMIMGCFRCRNFE 382

Query: 344 LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
                         Q C Y+     M  E  + DEAS
Sbjct: 383 --------------QACTYF---QAMIREGVEPDEAS 402


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 146/404 (36%), Positives = 237/404 (58%), Gaps = 2/404 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    ++A   F  +  +   SWN ++  F QN    +AL++  EM +H   P+ +T
Sbjct: 266 MYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGIT 325

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +VL ACA+   LR G  +H+ I   G+  D  LTN+L +MYAKCG +  A+ VF  ++
Sbjct: 326 LVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMT 385

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+ +++ GY +    + + +LF EM++  +    ++ +  +SAC+ L A+ +G+E
Sbjct: 386 KKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGRE 445

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH      ++   L + ++++D Y + G ID A++IF  +  K + SWN +I G    G 
Sbjct: 446 IHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGY 505

Query: 240 VDTAINLFEAMRE-DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
              A+ LF+ M E      D ++  A+L AC+H G+V++G +YF  M +  V P   HY 
Sbjct: 506 GKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHYG 565

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGRAG++++A   IK +P+EP+  IWG+LL ACR++  ++LG    +H+  + P 
Sbjct: 566 CIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPN 625

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQT 402
             G ++L+SN++AE  +WD+   VR LM SR  +K PG S VQ 
Sbjct: 626 DVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSSVQV 669



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 175/327 (53%), Gaps = 2/327 (0%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EAS +F  + E+++VSW +M++  AQ     K L+++ EM      PN VT+ ++L AC 
Sbjct: 174 EASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACG 233

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
           +   +  G+ ++ ++ + G+  D+ + NAL  MY KCGCL+ A   F  +  R   S+N 
Sbjct: 234 QTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNT 293

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           LI G+ Q  +  E+L +F EM L G+  D ++ +  +SACA L  +++G  +H       
Sbjct: 294 LIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNG 353

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           +     + NS+++ Y + G +  A ++F  +  KD  SW  ++ GY    +   A NLFE
Sbjct: 354 ICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFE 413

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            M+   V    ++ +++L+ACS  G ++KG++    ++  +V       + +VD+  + G
Sbjct: 414 EMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCG 473

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGA 335
            ++ A ++ + +  +   + W A++G 
Sbjct: 474 CIDTASEIFRKMQHKQTLS-WNAMIGG 499



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 157/327 (48%), Gaps = 5/327 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F  +A+ N   WN M+  ++       AL + REM      P++ T+  V+ A A 
Sbjct: 71  ARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAA 130

Query: 71  GHFLR---PGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF-RDEVSY 126
              L+    G  IHA + R G   D+F+ + L + Y     +  A  VF   + RD VS+
Sbjct: 131 FAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSW 190

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
             +I   +Q     + L + SEM+  G+  + V+ +  +SAC    A+ +G+ ++    +
Sbjct: 191 TSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGK 250

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
             +   + + N+++  YT+ G +  A + F  +P + + SWNTLI G+    E   A+ +
Sbjct: 251 FGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRI 310

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
           FE M   GV  D ++ +++L+AC+  G + KG      ++ + +    +    ++++  +
Sbjct: 311 FEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAK 370

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALL 333
            G M  A ++ + +  + D   W  ++
Sbjct: 371 CGDMAAAERVFQTM-TKKDVVSWTVMV 396



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 9/108 (8%)

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY-TRSGRIDL- 211
           ++H +++++ A ++ A+LA      E+HG  +R HL +  FVA  ++    + + R D+ 
Sbjct: 16  IRHHLLAYLDACASRAHLA------ELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMR 69

Query: 212 -ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
            A K+FD +   ++  WN +I GY        A+ +F  MR  GV  D
Sbjct: 70  YARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPD 117


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 147/426 (34%), Positives = 239/426 (56%), Gaps = 6/426 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN--EFPNS 58
           MY+K  R  EA  +F  I +++++SWNAM+A F       KAL     M   N  E P+ 
Sbjct: 151 MYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDE 210

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVF 116
            TLT++L AC+    +  GK+IH  ++R G +      +T +L D+Y KCG L  A+  F
Sbjct: 211 FTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAF 270

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           + I  +  +S++ LI+GY+Q  +  E++ LF  ++ L  + D  +    I   A+ A ++
Sbjct: 271 DQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLR 330

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           QGK++  + ++        V NS++D Y + G +D A K F  + +KD  SW  +I GYG
Sbjct: 331 QGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYG 390

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTE 294
             G    ++ +F  M    +  D V Y+A+L+ACSH G++++G++ F ++ +   +KP  
Sbjct: 391 KHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRV 450

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYAC+VDLLGRAG +++A  LI  +P++P+  IW  LL  CR++G++ELG    + L  
Sbjct: 451 EHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLR 510

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +  ++   Y+++SN+Y +AG W+E    REL   +  KK  G SWV+   EV  F   + 
Sbjct: 511 IDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGED 570

Query: 415 MKTFTP 420
               TP
Sbjct: 571 SHPLTP 576



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 206/446 (46%), Gaps = 62/446 (13%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K   P  A  +F ++ E+N+VSW+A+++    N     +L L  EM     +PN  T
Sbjct: 50  MYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFT 109

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            +  L AC   + L  G +IH   ++ G    + + N+L DMY+KCG +N A+ VF  I 
Sbjct: 110 FSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIV 169

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH--DVVSFMGAISACANLAAIKQG 177
            R  +S+N +I G+      S++L  F  M+   +K   D  +    + AC++   I  G
Sbjct: 170 DRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAG 229

Query: 178 KEIHGVTIRKHLH--THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           K+IHG  +R   H  +   +  S++D Y + G +  A K FD +  K   SW++LILGY 
Sbjct: 230 KQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYA 289

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK-PTE 294
             GE   A+ LF+ ++E     D  +  +I+   +   L+ +GK    +MQA +VK P+ 
Sbjct: 290 QEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGK----QMQALAVKLPSG 345

Query: 295 MHYACM---VDLLGRAGLMEDAVKLIKNLP------------------------------ 321
           +  + +   VD+  + GL+++A K    +                               
Sbjct: 346 LETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEM 405

Query: 322 ----VEPDANIWGALLGACRIYGNVELGAWAAEHLFM-------LKPQHCGYYILLSNMY 370
               +EPD   + A+L AC   G ++ G    E LF        +KP+   +Y  + ++ 
Sbjct: 406 LRHNIEPDEVCYLAVLSACSHSGMIKEG----EELFSKLLETHGIKPR-VEHYACVVDLL 460

Query: 371 AEAGKWDEASKVRELMKSREAKKNPG 396
             AG+  EA   + L+ +   K N G
Sbjct: 461 GRAGRLKEA---KHLIDTMPIKPNVG 483



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 55  FPNS-VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ 113
            PN    L ++L  C R      G ++H  +++ G   +L  +N L DMY KC    +A 
Sbjct: 2   IPNQRQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAY 61

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
            VF+ +  R+ VS++ L+ G+    D   SLSLFSEM   G+  +  +F   + AC  L 
Sbjct: 62  KVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLN 121

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           A+++G +IHG  ++      + V NS++D Y++ GRI+ A K+F  +  +   SWN +I 
Sbjct: 122 ALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIA 181

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSY--IAILTACSHGGLVEKGKK 280
           G+   G    A++ F  M+E  +   P  +   ++L ACS  G++  GK+
Sbjct: 182 GFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQ 231



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 78/171 (45%), Gaps = 1/171 (0%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           +  C       QG ++H   ++     +L  +N ++D Y +     +A K+FD +P ++ 
Sbjct: 13  LRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNV 72

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            SW+ L+ G+ + G++  +++LF  M   G+  +  ++   L AC     +EKG +    
Sbjct: 73  VSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGF 132

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                 +        +VD+  + G + +A K+ + + V+     W A++  
Sbjct: 133 CLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRI-VDRSLISWNAMIAG 182


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 154/417 (36%), Positives = 239/417 (57%), Gaps = 4/417 (0%)

Query: 2   YAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           YAK      A  +F  I +  K  VSWN+M+A +A      KA+   ++M       +  
Sbjct: 200 YAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLS 259

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T+ ++L +C +   L  GK IHA  I+ G + D+ + N L  MY+KCG +  A+ +F N+
Sbjct: 260 TILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNM 319

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +  VS+  +I GY++  D  E+++LFS M  +G K D+V+ +  +S C    A++ GK
Sbjct: 320 LGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGK 379

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            I        L  +L V N+++D Y + G +D A ++F  +P K   SW TLI G  + G
Sbjct: 380 WIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNG 439

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
           E   A+ LF  M E G+  + ++++A+L AC+H G +EKG + F+ M +   + P   HY
Sbjct: 440 EFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHY 499

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +CM DLLGR G +++A + I+N+P +PD  IW  LL AC+I+ NV +G   A HLF L+P
Sbjct: 500 SCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEP 559

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           Q    Y+ ++N+YA AGKWD  + +R +MK  +A K+PG S VQ   +  +F V DR
Sbjct: 560 QTAVPYVQMANIYASAGKWDRVAAIRTMMKCNKAMKSPGKSLVQVNGKTHEFTVEDR 616



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 196/401 (48%), Gaps = 8/401 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K S+   A  LF  + ++++ SWN+M+  FAQ     + + L  EM I     +SVT
Sbjct: 98  MYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVT 157

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---N 117
           +  +  +      L+  + IH+  I+ G++ D+ ++N     YAKCG   LA+ VF   +
Sbjct: 158 VIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGID 217

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              +  VS+N +I GY+    CS+++  F +M   G + D+ + +  +S+C     +  G
Sbjct: 218 KGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHG 277

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K IH   I+    + + V N+++  Y++ G I  A  +FD +  K   SW  +I GY   
Sbjct: 278 KLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEK 337

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G++D A+ LF AM   G   D V+ I++++ C   G +E GK       A+ +K   M  
Sbjct: 338 GDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVC 397

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE--LGAWAAEHLFML 355
             ++D+  + G M++A +L   +P E     W  L+  C + G  +  LG +       L
Sbjct: 398 NALIDVYAKCGSMDNARELFYTMP-EKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGL 456

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPG 396
           KP H  +  +L      AG  ++  +   LM ++  K NPG
Sbjct: 457 KPNHITFLAVLQAC-NHAGFLEKGWECFNLM-TKVYKINPG 495



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 166/367 (45%), Gaps = 45/367 (12%)

Query: 22  NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81
            +  WN+ +          KAL L R+M  +   PN++T  +V  AC++   L+  + +H
Sbjct: 18  TVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVH 77

Query: 82  ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCS 140
             +++     DLF+  ++ DMY KC  L  A N+F+ +  RD  S+N +I+G++Q     
Sbjct: 78  THVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVD 137

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
             +SLF EM + G++ D V+ +G   +  +L  +K  + IH   I+  + T + V+N+ +
Sbjct: 138 RVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWI 197

Query: 201 DFYTRSGRIDLANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
             Y + G   LA  +FD +   +K   SWN++I GY    +   A+  F+ M   G   D
Sbjct: 198 AAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRAD 257

Query: 259 PVSYIAILTAC-------------SHG----------------------GLVEKGKKYFD 283
             + +++L++C             +HG                      G +   +  FD
Sbjct: 258 LSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFD 317

Query: 284 EMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV---EPDANIWGALLGACRIYG 340
            M    +  T + +  M+      G +++A+ L   +     +PD     +L+  C   G
Sbjct: 318 NM----LGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTG 373

Query: 341 NVELGAW 347
            +ELG W
Sbjct: 374 ALELGKW 380



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 21/277 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A YLF N+  K  VSW AM+A +A+     +A+ L   M    E P+ VT
Sbjct: 302 MYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVT 361

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + +++  C +   L  GK I       GL  +L + NAL D+YAKCG ++ A+ +F  + 
Sbjct: 362 IISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMP 421

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+  LI G +   +  E+L LF +M  LG+K + ++F+  + AC +   +++G E
Sbjct: 422 EKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGWE 481

Query: 180 IHGVTIRKHLHTHLFVANSILDFYT-------RSGRIDLANKIFDCLPVK-DSASWNTLI 231
                   +L T ++  N  LD Y+       R GR+  A +    +P K D   W+ L+
Sbjct: 482 CF------NLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLL 535

Query: 232 LGYGM-----LGEVDTAINLFEAMREDGVGYDPVSYI 263
               +     +GE   A +LFE   +  V Y  ++ I
Sbjct: 536 SACKIHQNVVIGEC-VAYHLFELEPQTAVPYVQMANI 571


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 154/441 (34%), Positives = 238/441 (53%), Gaps = 35/441 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA +    ++   F  + ++N+VSWN+M+  +AQ     +A  L   M       +  TL
Sbjct: 155 YASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTL 214

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
            ++L AC+    L  GK +H+ ++ +G   DL L NAL DMY KCG L +A   F++  F
Sbjct: 215 VSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPF 274

Query: 121 RDEVSY-------------------------------NILIVGYSQTSDCSESLSLFSEM 149
           ++ VS+                               N +I  Y Q     E+L L++ M
Sbjct: 275 KNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRM 334

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT-HLFVANSILDFYTRSGR 208
           +LLG+  D  +    +SAC  L  +  GK IH   IR + H   + + NS+LD Y R G+
Sbjct: 335 KLLGLAPDEFTLAAVLSACGQLGDLASGKMIHD-CIRDNFHNPGVALFNSLLDMYARCGQ 393

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +D A  +F  +P K+  SWN +I    M G    A+  F +M  D    D ++++A+L+A
Sbjct: 394 VDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSA 453

Query: 269 CSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           C+HGGL+E G+ YF  M+   +VKP   HYACMVDLLGR G +  AV LIK++P+ PD  
Sbjct: 454 CNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVV 513

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           +WGALLGACRI+G++++G    + L  L+    G ++L+SNM  E  +W++  ++R+LM+
Sbjct: 514 VWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMR 573

Query: 388 SREAKKNPGCSWVQTRDEVQD 408
               KKN G S ++T   + +
Sbjct: 574 EWGMKKNMGVSSIETNSNIHE 594



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 168/365 (46%), Gaps = 33/365 (9%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  I + +   +N+++  +  +    +AL L+R M      PN  TL  +L ACAR
Sbjct: 63  ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
                     H  +++ G    +F+ NAL   YA  G L  ++  F+ +  R+ VS+N +
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 182

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY+Q  +  E+ SLF  MR  G+  D  + +  + AC+    ++ GK +H   + +  
Sbjct: 183 INGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGC 242

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA------------------------ 225
              L +AN+++D Y + G + +A+  FD +P K++                         
Sbjct: 243 RIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQ 302

Query: 226 -------SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
                  SWN +I  Y   G    A++L+  M+  G+  D  +  A+L+AC   G +  G
Sbjct: 303 IPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASG 362

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
           K   D ++ +   P    +  ++D+  R G ++ A+ L   +P + +   W A++GA  +
Sbjct: 363 KMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSK-NVISWNAIIGALAM 421

Query: 339 YGNVE 343
           +G  +
Sbjct: 422 HGRAQ 426



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 149/330 (45%), Gaps = 18/330 (5%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC---GCLNLAQNVFN-IS 119
           +L  C   H L    ++HA ++  G++    +T+ +   Y      G +  A+ +F+ I 
Sbjct: 18  LLRRCGSVHRL---NQLHAHLVVHGVDD---VTSQILASYCALPAGGGVWYARQLFDRIP 71

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D   YN LI  Y  +    E+L L   M   G+  +  +    + ACA + A +    
Sbjct: 72  DPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMV 131

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            HGV ++      +FV N++L  Y  +G +  + + FD +  ++  SWN++I GY   G 
Sbjct: 132 THGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGN 191

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A +LFE MR  G+  D  + +++L ACS  G +E GK     +     +   +    
Sbjct: 192 TREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANA 251

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VD+ G+ G +  A      +P + +A  W ++L A     +++    AA   F   P+ 
Sbjct: 252 LVDMYGKCGDLLMAHTCFDMMPFK-NAVSWTSMLCALAKRASID----AARDWFEQIPEK 306

Query: 360 C--GYYILLSNMYAEAGKWDEASKVRELMK 387
               +  ++S  Y + G++ EA  +   MK
Sbjct: 307 SIISWNAMIS-CYVQGGRFHEALDLYNRMK 335



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 37/78 (47%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+  +   A  LF  +  KN++SWNA++   A +     AL   R M      P+ +T
Sbjct: 387 MYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEIT 446

Query: 61  LTNVLPACARGHFLRPGK 78
              +L AC  G  L  G+
Sbjct: 447 FVALLSACNHGGLLEAGQ 464


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 148/414 (35%), Positives = 245/414 (59%), Gaps = 11/414 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA++   +EA  LF  +  +++ +W AMV+ F QN +  +A ++  EMP  NE    V+ 
Sbjct: 256 YAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNE----VSW 311

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             ++    +   +   +E+  ++  +  +      N +   YA+CG ++ A+ +F+ +  
Sbjct: 312 NAMIAGYVQSQQIEKARELFDQMPSRNTSS----WNTMVTGYAQCGNIDQAKILFDEMPQ 367

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD +S+  +I GY+Q+    E+L LF +M+  G   +  +   A+S+CA +AA++ GK++
Sbjct: 368 RDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQL 427

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  ++    T     N++L  Y + G I+ A  +F+ +  KD  SWNT+I GY   G  
Sbjct: 428 HGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFG 487

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYAC 299
             A+ LFE+M+   +  D V+ + +L+ACSH G V+KG +YF+ M Q   +     HY C
Sbjct: 488 KEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTC 546

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           M+DLLGRAG +++A+ L+K++P  PDA  WGALLGA RI+G+ ELG  AAE +F ++P +
Sbjct: 547 MIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDN 606

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G Y+LLSN+YA +G+W E  ++R  M+ +  KK PG SWV+ +++   F V D
Sbjct: 607 SGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGD 660



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 154/289 (53%), Gaps = 23/289 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K+   + A  LF+ + EK++VSWNAM++ FAQN    +A ++  +M + NE    ++ 
Sbjct: 132 YVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNE----ISW 187

Query: 62  TNVLPACARGHFLRPGK-EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +L A     +++ G+ E   R+    +++++   N L   Y +   L+ A+++F+ + 
Sbjct: 188 NGLLSA-----YVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMP 242

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD++S+NI+I GY+Q    SE+  LF E+ +     DV ++   +S       + +   
Sbjct: 243 VRDKISWNIMITGYAQNGLLSEARRLFEELPI----RDVFAWTAMVSGFVQNGMLDEATR 298

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I      K+  +     N+++  Y +S +I+ A ++FD +P ++++SWNT++ GY   G 
Sbjct: 299 IFEEMPEKNEVSW----NAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGN 354

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           +D A  LF+ M +     D +S+ A+++  +  G  E+    F +M+ D
Sbjct: 355 IDQAKILFDEMPQ----RDCISWAAMISGYAQSGQSEEALHLFIKMKRD 399



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 166/364 (45%), Gaps = 31/364 (8%)

Query: 18  IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPG 77
           I + +IV WN  ++ +      ++  Q    + + N      T+T    A   G+     
Sbjct: 55  IVDSDIVKWNRKISAY------MRKGQCESALSVFNGMRRRSTVT--YNAMISGYLSNNK 106

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
            +   ++  K  + DL   N +   Y K G L+ A+ +FN +  +D VS+N ++ G++Q 
Sbjct: 107 FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               E+  +F +M    +  + +S+ G +SA      I+  + +        +   +   
Sbjct: 167 GFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRL----FDSKMDWEIVSW 218

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N ++  Y R  R+D A  +FD +PV+D  SWN +I GY   G +  A  LFE +      
Sbjct: 219 NCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL----PI 274

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            D  ++ A+++     G++++  + F+EM     +  E+ +  M+    ++  +E A +L
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKAREL 330

Query: 317 IKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-CGYYILLSNMYAEAGK 375
              +P   + + W  ++      GN++     A+ LF   PQ  C  +  + + YA++G+
Sbjct: 331 FDQMPSR-NTSSWNTMVTGYAQCGNID----QAKILFDEMPQRDCISWAAMISGYAQSGQ 385

Query: 376 WDEA 379
            +EA
Sbjct: 386 SEEA 389



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 2/116 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F +I EK+IVSWN M+A +A++    +AL L   M +  + P+ VT
Sbjct: 449 MYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIK-PDDVT 507

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           L  VL AC+   F+  G E    + +  G+  +      + D+  + G L+ A N+
Sbjct: 508 LVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNL 563


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 145/420 (34%), Positives = 245/420 (58%), Gaps = 10/420 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     +A+ +F  ++ +++V+W+AMVA +A+N    +AL L R+M +    PN VT
Sbjct: 120 LYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVT 179

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L + L ACA    LR G  +H R+  +G+   + +  AL ++Y KCG +  A   F  I 
Sbjct: 180 LVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIV 239

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ V+++ +   Y++     +++ +   M L G+  +  +F+  + ACA +AA+KQG+ 
Sbjct: 240 EKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRR 299

Query: 180 IHGVTIRKH-----LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           IH    R H     L + ++V  ++++ Y++ G + LA  +FD +   D   WN+LI   
Sbjct: 300 IHE---RIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATN 356

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
              G+ + A+ LFE MR +G+    +++ ++L ACSH G++++G+K+F     D  + P 
Sbjct: 357 AQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPE 416

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             H+ CMVDLLGRAG + D+  L+ ++P EP    W A LGACR Y N++   WAAE+LF
Sbjct: 417 AEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLF 476

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            L P+    Y+LLSNMYA+AG+W + +++R+ M+     K  G SW++ +D V +F+  D
Sbjct: 477 QLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGD 536



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 163/346 (47%), Gaps = 4/346 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K  R  +A  +FH I  KN+ SW  M+A FA+NR   +     R M +    P  V 
Sbjct: 19  LYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPGEVG 78

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG-CLNLAQNVFNIS 119
           ++  L AC     +  G+ I   I+  G+  +  +  AL  +Y K G C + A     +S
Sbjct: 79  ISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMS 138

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V+++ ++  Y++     E+L LF +M L G+  + V+ +  + ACA+L  ++ G  
Sbjct: 139 HRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGAL 198

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H     + + + + V  ++++ Y + GRI+ A + F  +  K+  +W+ +   Y     
Sbjct: 199 MHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDR 258

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ--ADSVKPTEMHY 297
              AI +   M  +G+  +  +++++L AC+    +++G++  + +      ++      
Sbjct: 259 NRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVL 318

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             +V++  + G +  A  +   +    D  +W +L+     +G  E
Sbjct: 319 TALVNMYSKCGNLALAGNMFDKIA-HLDLVLWNSLIATNAQHGQTE 363



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 2/243 (0%)

Query: 94  FLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL 152
           FL N L D+Y KC   + A  VF+ I  ++  S+ +++  +++  D       F  M L 
Sbjct: 11  FLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQ 70

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G+    V     +SAC +   I  G+ I    +   +     V  +++  Y + G    A
Sbjct: 71  GINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDA 130

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
             +F  +  +D  +W+ ++  Y   G    A+ LF  M  DGV  + V+ ++ L AC+  
Sbjct: 131 ASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASL 190

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
           G +  G      ++A  ++   +    +V+L G+ G +E A +    + VE +   W A+
Sbjct: 191 GDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQI-VEKNVVAWSAI 249

Query: 333 LGA 335
             A
Sbjct: 250 SAA 252


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 146/423 (34%), Positives = 242/423 (57%), Gaps = 13/423 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVS------WNAMVANFAQNRLELKALQLVREMPIHNE 54
           MY+K     +A  +F    + N ++      WNAM++ ++Q+    +AL+L  +M  +  
Sbjct: 312 MYSKCGSLHDARSVF----DTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGI 367

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF-LTNALTDMYAKCGCLNLAQ 113
             +  T  +V  A A    L+ G+ +H  +++ GL+  +  + NA+ D Y+KCG L   +
Sbjct: 368 TSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVR 427

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
            VF+ +  RD VS+  L+  YSQ+S   E+L+ F  MR  G   +  +F   + +CA+L 
Sbjct: 428 KVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLC 487

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
            ++ G+++HG+  +  L T   + ++++D Y + G I  A K+FD +   D  SW  +I 
Sbjct: 488 FLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIIS 547

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVK 291
           GY   G V+ A+ LF  M   G+  + V+ + +L ACSHGG+VE+G  YF +M+    V 
Sbjct: 548 GYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVV 607

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
           P   HYAC++DLLGR G ++DA++ I+ +P+EP+  +W  LLG CR++GNVELG  AA  
Sbjct: 608 PEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARK 667

Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           +  ++P++   Y+LLSN Y E G +++   +R +MK +  KK PG SW+  +  V  F  
Sbjct: 668 ILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYS 727

Query: 412 NDR 414
            D+
Sbjct: 728 GDQ 730



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 177/347 (51%), Gaps = 5/347 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     ++ ++F+ + E N VSWNAM++    N L L+A  L   M      PN  T
Sbjct: 211 MYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYT 270

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L +V  A  +   +  GKE+       G+  ++ +  AL DMY+KCG L+ A++VF+ +F
Sbjct: 271 LVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNF 330

Query: 121 RD---EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
            +      +N +I GYSQ+    E+L L+ +M   G+  D+ ++    +A A   +++ G
Sbjct: 331 INCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFG 390

Query: 178 KEIHGVTIRKHLHTHLF-VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           + +HG+ ++  L   +  V N+I D Y++ G ++   K+FD +  +D  SW TL+  Y  
Sbjct: 391 RVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQ 450

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
               + A+  F  MRE+G   +  ++ ++L +C+    +E G++    +    +   +  
Sbjct: 451 SSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCI 510

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            + ++D+  + G + +A K+   +   PD   W A++     +G VE
Sbjct: 511 ESALIDMYAKCGSITEAGKVFDKIS-NPDIVSWTAIISGYAQHGLVE 556



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 182/426 (42%), Gaps = 49/426 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K S    A  +F  + ++N+ SW  M+    ++ L     +   EM      P+   
Sbjct: 110 VYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFA 169

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            + ++ +C     L  GK +HA+I+ +G    +F++ +L +MYAK G +  +  VFN ++
Sbjct: 170 YSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMT 229

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             ++VS+N +I G +      E+  LF  M+      ++ + +    A   L  +  GKE
Sbjct: 230 EHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKE 289

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC--LPVKDSASWNTLILGYGML 237
           +        +  ++ V  +++D Y++ G +  A  +FD   +    +  WN +I GY   
Sbjct: 290 VQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQS 349

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HG-------------- 272
           G    A+ L+  M ++G+  D  +Y ++  A +           HG              
Sbjct: 350 GCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSV 409

Query: 273 -----------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK---LIK 318
                      G +E  +K FD M+   +    + +  +V    ++ L E+A+    L++
Sbjct: 410 NNAIADAYSKCGFLEDVRKVFDRMEERDI----VSWTTLVTAYSQSSLGEEALATFCLMR 465

Query: 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--LKPQHCGYYILLSNMYAEAGKW 376
                P+   + ++L +C     +E G      L    L  + C    L+ +MYA+ G  
Sbjct: 466 EEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALI-DMYAKCGSI 524

Query: 377 DEASKV 382
            EA KV
Sbjct: 525 TEAGKV 530



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 127/279 (45%), Gaps = 8/279 (2%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFD----LFLTNALTDMYAKCGCLNLAQNVF 116
           L +VL  CA    +R  K +H  +++   NF+    + L N    +Y+KC     A  VF
Sbjct: 67  LIDVLRDCAEKGSIREAKAVHGLVLKS--NFEDKDLMVLFNHAAHVYSKCSEFRAACGVF 124

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           + +  R+  S+ ++IVG ++     +    F EM   G+  D  ++   I +C  L +++
Sbjct: 125 DEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLE 184

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK +H   + +   TH+FV+ S+L+ Y + G I+ +  +F+ +   +  SWN +I G  
Sbjct: 185 LGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCT 244

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G    A +LF  M+      +  + +++  A      V  GK+  +      ++   +
Sbjct: 245 SNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVL 304

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI-WGALL 333
               ++D+  + G + DA  +     +    N  W A++
Sbjct: 305 VGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMI 343



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 78/188 (41%), Gaps = 3/188 (1%)

Query: 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH--LFVANSILDFYTRSGRIDLA 212
           +  V   +  +  CA   +I++ K +HG+ ++ +      + + N     Y++      A
Sbjct: 61  QTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAA 120

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
             +FD +P ++  SW  +I+G    G        F  M   G+  D  +Y AI+ +C   
Sbjct: 121 CGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGL 180

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
             +E GK    ++              ++++  + G +ED+   + N+  E +   W A+
Sbjct: 181 DSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSY-WVFNMMTEHNQVSWNAM 239

Query: 333 LGACRIYG 340
           +  C   G
Sbjct: 240 ISGCTSNG 247


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 149/417 (35%), Positives = 245/417 (58%), Gaps = 7/417 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+     +A  LF  +  ++  +W+ MV  FA+           RE+      P++ TL
Sbjct: 45  YAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTL 104

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
             V+  C     L+ G+ IH  +++ GL  D F+  +L DMYAKC  +  AQ +F  +  
Sbjct: 105 PFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLS 164

Query: 121 RDEVSYNILIVGYSQTSDCS--ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           +D V++ ++I  Y+   DC+  ESL LF  MR  G+  D V+ +  ++ACA L A+ + +
Sbjct: 165 KDLVTWTVMIGAYA---DCNAYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRAR 221

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             +   +R      + +  +++D Y + G ++ A ++FD +  K+  SW+ +I  YG  G
Sbjct: 222 FANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHG 281

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               AI+LF  M    +  + V+++++L ACSH GL+E+G ++F+ M +  +V+P   HY
Sbjct: 282 RGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHY 341

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLLGRAG +++A++LI+ + VE D  +W ALLGACRI+  +EL   AA  L  L+P
Sbjct: 342 TCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQP 401

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           Q+ G+Y+LLSN+YA+AGKW++ +K R++M  R+ KK PG +W++  ++   F V DR
Sbjct: 402 QNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDR 458



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 161/354 (45%), Gaps = 54/354 (15%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           +++HA ++  G   DL + N L   YA+   ++ A ++F+ ++ RD  ++++++ G+++ 
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
            D +   + F E+   G+  D  +    I  C +   ++ G+ IH V ++  L +  FV 
Sbjct: 80  GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVC 139

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
            S++D Y +   ++ A ++F+ +  KD  +W  +I  Y      ++ + LF+ MRE+GV 
Sbjct: 140 ASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYESLV-LFDRMREEGVV 198

Query: 257 YDPVSYIAILTAC-----------------------------------SHGGLVEKGKKY 281
            D V+ + ++ AC                                   +  G VE  ++ 
Sbjct: 199 PDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREV 258

Query: 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRI 338
           FD M+  +V    + ++ M+   G  G  +DA+ L   +    + P+   + +LL AC  
Sbjct: 259 FDRMKEKNV----ISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSH 314

Query: 339 YGNVELG------AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
            G +E G       W  EH      +H   Y  + ++   AG+ DEA ++ E M
Sbjct: 315 AGLIEEGLRFFNSMW-EEHAVRPDVKH---YTCMVDLLGRAGRLDEALRLIEAM 364



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 139/294 (47%), Gaps = 5/294 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  LF  +  K++V+W  M+  +A      ++L L   M      P+ V 
Sbjct: 145 MYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN-AYESLVLFDRMREEGVVPDKVA 203

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  V+ ACA+   +   +  +  I+R G + D+ L  A+ DMYAKCG +  A+ VF+ + 
Sbjct: 204 MVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMK 263

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ +S++ +I  Y       +++ LF  M    +  + V+F+  + AC++   I++G  
Sbjct: 264 EKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLR 323

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KDSASWNTLILGYGML 237
                  +H +   +     ++D   R+GR+D A ++ + + V KD   W+ L+    + 
Sbjct: 324 FFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIH 383

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
            +++ A     ++ E     +P  Y+ +    +  G  EK  K+ D M    +K
Sbjct: 384 SKMELAEKAANSLLELQ-PQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLK 436



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 7/180 (3%)

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C N+  I+Q   +H   +       L +AN +L  Y +   ID A  +FD L ++DS +W
Sbjct: 13  CRNVFHIRQ---VHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTW 69

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           + ++ G+   G+       F  +   GV  D  +   ++  C     ++ G+   D +  
Sbjct: 70  SVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLK 129

Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA---CRIYGNVEL 344
             +       A +VD+  +  ++EDA +L + + +  D   W  ++GA   C  Y ++ L
Sbjct: 130 HGLLSDHFVCASLVDMYAKCIVVEDAQRLFERM-LSKDLVTWTVMIGAYADCNAYESLVL 188


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 144/415 (34%), Positives = 246/415 (59%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      ++++F  +  K+ +SW  ++  +AQ+   ++AL++ RE        + + 
Sbjct: 410 MYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMM 469

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + ++L AC+    +   K++H   IR GL  DL + N + D+Y +CG +  +  +F  + 
Sbjct: 470 IGSILEACSGLETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVE 528

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V++  +I  Y+ +   +E+L LF+EM+   ++ D V+ +  + A   L+++ +GKE
Sbjct: 529 QKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKE 588

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  IR++ H    + +S++D Y+  G +  A K+F+ +  KD   W  +I   GM G 
Sbjct: 589 VHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGH 648

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AI+LF+ M + GV  D VS++A+L ACSH  LV +GK Y D M +   ++P + HYA
Sbjct: 649 GKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYA 708

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGR+G  E+A + IK++P++P + +W +LLGACR++ N EL   AA  L  L+P 
Sbjct: 709 CVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPD 768

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + G Y+L+SN++AE GKW+ A +VR  +  R  +K+P CSW++  + V  F   D
Sbjct: 769 NPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRD 823



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 202/428 (47%), Gaps = 41/428 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAE-KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MYAK      A  +F  + + +++ SWN+M++   QN + L+AL L R M       NS 
Sbjct: 208 MYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSY 267

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   VL  C     L  G+E+HA +++ G   ++   NAL  MY KCG ++ A  VF  I
Sbjct: 268 TTVGVLQVCTELAQLNLGRELHAALLKSGSEVNI-QCNALLVMYTKCGRVDSALRVFREI 326

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D +S+N ++  Y Q    +E++   SEM   G + D    +   SA  +L  +  GK
Sbjct: 327 DEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGK 386

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+H   I++ L +   V N+++D Y +   I+ +  +FD + +KD  SW T+I  Y    
Sbjct: 387 EVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSS 446

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACS----------------HGGLV------- 275
               A+ +F   +++G+  DP+   +IL ACS                  GL+       
Sbjct: 447 RHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNR 506

Query: 276 ------EKGKKYFDEMQADSVKPTEM-HYACMVDLLGRAGLMEDAVKL---IKNLPVEPD 325
                 E G+ Y      ++V+  ++  +  M++    +GL+ +A+ L   +++  V+PD
Sbjct: 507 IIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPD 566

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ-HCGYYIL--LSNMYAEAGKWDEASKV 382
           +    ++LGA  I G   L      H F+++   H    I+  L +MY+  G    A KV
Sbjct: 567 SVALVSILGA--IGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKV 624

Query: 383 RELMKSRE 390
              +K ++
Sbjct: 625 FNAVKCKD 632



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 140/285 (49%), Gaps = 6/285 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH---NEFPN 57
           MY K  R A+A  LF  ++ + + SWNA++  +  +    +AL + R M +       P+
Sbjct: 104 MYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPD 163

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             TL +VL A       R G E+H   ++ GL+   F+ NAL  MYAKCG L+ A  VF 
Sbjct: 164 GCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFE 223

Query: 118 ISF--RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           +    RD  S+N +I G  Q     ++L LF  M+   +  +  + +G +  C  LA + 
Sbjct: 224 LMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLN 283

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G+E+H   ++     ++   N++L  YT+ GR+D A ++F  +  KD  SWN+++  Y 
Sbjct: 284 LGRELHAALLKSGSEVNI-QCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYV 342

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
             G    AI     M   G   D    +++ +A  H G +  GK+
Sbjct: 343 QNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKE 387



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 136/280 (48%), Gaps = 15/280 (5%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           VL   A    +  G ++HA  +  G     D FL   L  MY KCG +  A+ +F+ +S 
Sbjct: 64  VLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSS 123

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRL---LGMKHDVVSFMGAISACANLAAIKQG 177
           R   S+N LI  Y  +    E+L ++  MRL    G+  D  +    + A       + G
Sbjct: 124 RTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCG 183

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL-PVKDSASWNTLILGYGM 236
            E+HG+ ++  L    FVAN+++  Y + G +D A ++F+ +   +D ASWN++I G   
Sbjct: 184 CEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQ 243

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP-TEM 295
            G    A++LF  M+   +  +  + + +L  C+    +  G+    E+ A  +K  +E+
Sbjct: 244 NGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGR----ELHAALLKSGSEV 299

Query: 296 HYAC--MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +  C  ++ +  + G ++ A+++ + +  E D   W ++L
Sbjct: 300 NIQCNALLVMYTKCGRVDSALRVFREID-EKDYISWNSML 338



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 5/169 (2%)

Query: 173 AIKQGKEIHG--VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           A+ QG ++H   V          F+A  +L  Y + GR+  A  +FD +  +   SWN L
Sbjct: 73  AVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNAL 132

Query: 231 ILGYGMLGEVDTAINLFEAMR---EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           I  Y   G    A+ ++ AMR     GV  D  +  ++L A    G    G +       
Sbjct: 133 IGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVK 192

Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
             +  +      ++ +  + G+++ A+++ + +    D   W +++  C
Sbjct: 193 HGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGC 241


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 146/421 (34%), Positives = 241/421 (57%), Gaps = 2/421 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+    +A  +F  ++ ++++ WNA+++  +      +A  +   +       N  T
Sbjct: 254 MYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTT 313

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL + A        +++HA   + G  FD  + N L D Y KC CL+ A  VF   S
Sbjct: 314 LAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECS 373

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D ++   +I   SQ      ++ LF EM   G++ D       ++ACA+L+A +QGK+
Sbjct: 374 SGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 433

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I++   +  F  N+++  Y + G I+ A   F  LP +   SW+ +I G    G 
Sbjct: 434 VHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGH 493

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+ LF  M ++G+  + ++  ++L AC+H GLV++ K+YF+ M +   +  TE HY+
Sbjct: 494 GKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYS 553

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLGRAG ++DA++L+ ++P + +A++WGALLGA R++ + ELG  AAE LF+L+P+
Sbjct: 554 CMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPE 613

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
             G ++LL+N YA +G W+E +KVR+LMK    KK P  SWV+ +D+V  F+V D+    
Sbjct: 614 KSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPM 673

Query: 419 T 419
           T
Sbjct: 674 T 674



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 165/370 (44%), Gaps = 35/370 (9%)

Query: 19  AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78
           +E+N VSWN +++ + +N     A+Q+  EM      P     + V+ AC     +  G+
Sbjct: 70  SERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGR 129

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTS 137
           ++HA ++R G   D+F  NAL DMY K G +++A  +F  +   D VS+N LI G     
Sbjct: 130 QVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 189

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
               ++ L  +M+  G+  +V      + ACA   A   G++IHG  I+ +  +  ++  
Sbjct: 190 HDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGV 249

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
            ++D Y ++  +D A K+FD +  +D   WN LI G    G  D A ++F  +R++G+G 
Sbjct: 250 GLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGV 309

Query: 258 DPVSYIAILTACSH----------GGLVEKGKKYFDEMQADSVKPTEMHYAC-------- 299
           +  +  A+L + +             L EK    FD    + +  +    +C        
Sbjct: 310 NRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVF 369

Query: 300 -------------MVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVE 343
                        M+  L +    E A+KL   +    +EPD  +  +LL AC      E
Sbjct: 370 EECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYE 429

Query: 344 LGAWAAEHLF 353
            G     HL 
Sbjct: 430 QGKQVHAHLI 439



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 141/286 (49%), Gaps = 10/286 (3%)

Query: 53  NEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
           NEF   V L  V  A       + G ++HA  +  G   D+F+ NAL  MY   G ++ A
Sbjct: 9   NEFALPVVLKCVPDA-------QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDA 61

Query: 113 QNVFNI--SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170
           + VF+   S R+ VS+N L+  Y +   C +++ +F EM   G++     F   ++AC  
Sbjct: 62  RRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTG 121

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
              I  G+++H + +R      +F AN+++D Y + GR+D+A+ IF+ +P  D  SWN L
Sbjct: 122 SRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNAL 181

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           I G  + G    AI L   M+  G+  +     +IL AC+  G  + G++    M   + 
Sbjct: 182 ISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANA 241

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
              +     +VD+  +   ++DA+K+   +    D  +W AL+  C
Sbjct: 242 DSDDYIGVGLVDMYAKNHFLDDAMKVFDWMS-HRDLILWNALISGC 286



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 158/342 (46%), Gaps = 2/342 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  R   AS +F  + + ++VSWNA+++    N  + +A++L+ +M      PN   
Sbjct: 153 MYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFM 212

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L+++L ACA       G++IH  +I+   + D ++   L DMYAK   L+ A  VF+ +S
Sbjct: 213 LSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMS 272

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD + +N LI G S      E+ S+F  +R  G+  +  +    + + A+L A    ++
Sbjct: 273 HRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQ 332

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H +  +        V N ++D Y +   +  A ++F+     D  +  ++I        
Sbjct: 333 VHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDH 392

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + AI LF  M   G+  DP    ++L AC+     E+GK+    +              
Sbjct: 393 GEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNA 452

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           +V    + G +EDA     +LP E     W A++G    +G+
Sbjct: 453 LVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGH 493


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 155/417 (37%), Positives = 241/417 (57%), Gaps = 16/417 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+    AEA  LF     +++ +W A+V+ +AQN +  +A ++   MP  N    +V+ 
Sbjct: 303 YARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKN----AVSW 358

Query: 62  TNVLPACARGHFLRPGKEI-HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
             ++ A  +   +   KE+  A   R   +++  LT      YA+ G L+ A+ +F +  
Sbjct: 359 NAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTG-----YAQAGMLDEARAIFGMMP 413

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+  ++  YSQ     E+L LF EM   G   +  +F   +S CA++AA++ G +
Sbjct: 414 QKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 473

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+       FV N++L  Y + G ++ A+  F+ +  +D  SWNT+I GY   G 
Sbjct: 474 LHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGF 533

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD---SVKPTEMH 296
              A+ +F+ MR+     D ++ + +L ACSH GLVEKG  YF  M  D   + KP   H
Sbjct: 534 GKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPE--H 591

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y CM+DLLGRAG +++AV L+K++P EPD+ +WGALLGA RI+ N ELG  AAE +F L+
Sbjct: 592 YTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELE 651

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P++ G Y+LLSN+YA +GKW +  K+R +M  R  KK PG SW++ +++V  F V D
Sbjct: 652 PENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGD 708



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 176/413 (42%), Gaps = 67/413 (16%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A + F    EK+ VSWN M+A + +N      +Q  RE+       ++++   ++     
Sbjct: 219 ARHYFDLAPEKDAVSWNGMLAAYVRN----GRIQEARELFDSRTEWDAISWNALMA---- 270

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNIL 129
           G+  R   E   ++  K    D+   N +   YA+ G +  A+ +F+++  RD  ++  +
Sbjct: 271 GYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAI 330

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           + GY+Q     E+  +F  M       + VS+   ++A      +++ KE+      +++
Sbjct: 331 VSGYAQNGMLEEAKRVFDAM----PDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNV 386

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            +     N++L  Y ++G +D A  IF  +P KD+ SW  ++  Y  +G  +  + LF+ 
Sbjct: 387 ASW----NTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKE 442

Query: 250 MREDGVGYDPVSYIAILTACS-----------HGGLV----------------------- 275
           M   G   +  ++  +L+ C+           H  L+                       
Sbjct: 443 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGS 502

Query: 276 -EKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IKNLPVEPDANIWGA 331
            E+    F+EM+   V    + +  M+    R G  ++A+++   ++    +PD      
Sbjct: 503 MEEAHSAFEEMEERDV----VSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVG 558

Query: 332 LLGACRIYGNVELGA---WAAEHLFML--KPQHCGYYILLSNMYAEAGKWDEA 379
           +L AC   G VE G    ++    F +  KP+H   Y  + ++   AG+ DEA
Sbjct: 559 VLAACSHSGLVEKGISYFYSMHRDFGVATKPEH---YTCMIDLLGRAGRLDEA 608



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 156/358 (43%), Gaps = 61/358 (17%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           + ++ R  +A  LF  +  ++  ++N M+A +A N    +AL   R +P     P+S + 
Sbjct: 117 HMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP----RPDSFSY 172

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             +L A                         L ++++L D+ A          +F+ +  
Sbjct: 173 NTLLHA-------------------------LGVSSSLADVRA----------LFDEMPV 197

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D VSYN++I  ++     S +   F     L  + D VS+ G ++A      I++ +E+
Sbjct: 198 KDSVSYNVMISSHANHGLVSLARHYFD----LAPEKDAVSWNGMLAAYVRNGRIQEAREL 253

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
                           N+++  Y +  +I+ A K+F+ +P +D  SWNT++ GY   G++
Sbjct: 254 ----FDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDM 309

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A  LF+         D  ++ AI++  +  G++E+ K+ FD M   +     + +  M
Sbjct: 310 AEARRLFDV----APIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNA----VSWNAM 361

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           +    +  +ME+A +L   +P    A+ W  +L      G ++     A  +F + PQ
Sbjct: 362 MAAYVQRRMMEEAKELFDAMPCRNVAS-WNTMLTGYAQAGMLD----EARAIFGMMPQ 414



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 142/332 (42%), Gaps = 48/332 (14%)

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
           + ++   N     + + G +  A+ +F  +  R   +YN ++ GY+      ++LS F  
Sbjct: 104 DMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRS 163

Query: 149 MRLLGMKHDVVSF------MGAISACANLAAIKQGKEI-----HGVTIRKH-------LH 190
           +     + D  S+      +G  S+ A++ A+     +     + V I  H       L 
Sbjct: 164 I----PRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLA 219

Query: 191 THLF---------VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
            H F           N +L  Y R+GRI  A ++FD     D+ SWN L+ GY    +++
Sbjct: 220 RHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIE 279

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE--MHYAC 299
            A  +F  M +     D VS+  +++  +  G + + ++ FD      V P      +  
Sbjct: 280 EAQKMFNKMPQ----RDVVSWNTMVSGYARRGDMAEARRLFD------VAPIRDVFTWTA 329

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +V    + G++E+A ++   +P + +A  W A++ A   Y    +   A E    +  ++
Sbjct: 330 IVSGYAQNGMLEEAKRVFDAMP-DKNAVSWNAMMAA---YVQRRMMEEAKELFDAMPCRN 385

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
              +  +   YA+AG  DEA  +  +M  ++A
Sbjct: 386 VASWNTMLTGYAQAGMLDEARAIFGMMPQKDA 417



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 2/143 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA   F  + E+++VSWN M+A +A++    +AL++   M   +  P+ +T
Sbjct: 496 MYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDIT 555

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           L  VL AC+    +  G      + R  G+         + D+  + G L+ A N+  ++
Sbjct: 556 LVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDM 615

Query: 119 SFRDEVSYNILIVGYSQTSDCSE 141
            F  + +    ++G S+    SE
Sbjct: 616 PFEPDSTMWGALLGASRIHRNSE 638


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 152/417 (36%), Positives = 237/417 (56%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K+     A+ LF  +  K+I+SW++MVA +A N  E  AL L  EM       N VT
Sbjct: 250 LYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVT 309

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + + L ACA    L  GK+IH   +  G   D+ ++ AL DMY KC     A  +FN + 
Sbjct: 310 VISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMP 369

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+ +L  GY++     +SL +F  M   G + D ++ +  ++A + L  ++Q   
Sbjct: 370 KKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQALC 429

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H    +     + F+  S+++ Y +   ID ANK+F  L   D  +W+++I  YG  G+
Sbjct: 430 LHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYGFHGQ 489

Query: 240 VDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
            + A+ L   M     V  + V++++IL+ACSH GL+E+G K F  M  +  + P   HY
Sbjct: 490 GEEALKLSHQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNIEHY 549

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
             MVDLLGR G ++ A+ +I N+P++   ++WGALLGACRI+ N+++G  AA +LF+L P
Sbjct: 550 GIMVDLLGRMGELDKALDMINNMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDP 609

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            H GYY LLSN+Y     W +A+K+R L+K    KK  G S V+ ++EV  F+ +DR
Sbjct: 610 NHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRLKKIVGQSMVEIKNEVHSFIASDR 666



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 178/359 (49%), Gaps = 30/359 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM---PIHNEFPN 57
           +YA+ +    A  LF     K +  WNA++ ++      ++ L L  +M    +  E P+
Sbjct: 45  LYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPD 104

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           + T++  L +C+    L  GK IH   ++K ++ D+F+ +AL ++Y+KCG +N A  VF 
Sbjct: 105 NYTVSIALKSCSGLQKLELGKMIHG-FLKKKIDSDMFVGSALIELYSKCGQMNDAVKVFT 163

Query: 118 ISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAAIK 175
              + D V +  +I GY Q      +L+ FS M +L  +  D V+ + A SACA L+   
Sbjct: 164 EYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFN 223

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G+ +HG   R+   T L +ANSIL+ Y ++G I +A  +F  +P KD  SW++++  Y 
Sbjct: 224 LGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYA 283

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G    A+NLF  M +  +  + V+ I+ L AC+    +E+GK+         +    +
Sbjct: 284 DNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQ---------IHKLAV 334

Query: 296 HYACMVDLLGRAGLM---------EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
           +Y   +D+     LM         E+A++L   +P + D   W  L       G  E+G
Sbjct: 335 NYGFELDITVSTALMDMYLKCFSPENAIELFNRMP-KKDVVSWAVLFS-----GYAEIG 387



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 128/263 (48%), Gaps = 8/263 (3%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILIVGYSQTS 137
           ++H++ ++ GL  D F+   L  +YA+   L  A  +F  +    V  +N L+  Y    
Sbjct: 22  QLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 138 DCSESLSLFSEMR---LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
              E+LSLF +M    +   + D  +   A+ +C+ L  ++ GK IHG  ++K + + +F
Sbjct: 82  KWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGF-LKKKIDSDMF 140

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE-D 253
           V +++++ Y++ G+++ A K+F   P  D   W ++I GY   G  + A+  F  M   +
Sbjct: 141 VGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLE 200

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
            V  DPV+ ++  +AC+       G+     ++             +++L G+ G +  A
Sbjct: 201 QVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIA 260

Query: 314 VKLIKNLPVEPDANIWGALLGAC 336
             L + +P + D   W +++ AC
Sbjct: 261 ANLFREMPYK-DIISWSSMV-AC 281



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 14/187 (7%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           +  C +  +I Q   +H   ++  L    FV   +   Y R   +  A+K+F+  P K  
Sbjct: 11  LETCCSKISITQ---LHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTV 67

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD-PVSYIA--ILTACSHGGLVEKGKKY 281
             WN L+  Y + G+    ++LF  M  D V  + P +Y     L +CS    +E GK  
Sbjct: 68  YLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMI 127

Query: 282 --FDEMQADSVKPTEMHY-ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
             F + + DS    +M   + +++L  + G M DAVK+    P +PD  +W +++     
Sbjct: 128 HGFLKKKIDS----DMFVGSALIELYSKCGQMNDAVKVFTEYP-KPDVVLWTSIITGYEQ 182

Query: 339 YGNVELG 345
            G+ EL 
Sbjct: 183 NGSPELA 189


>gi|357446017|ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482334|gb|AES63537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 622

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 143/404 (35%), Positives = 244/404 (60%), Gaps = 3/404 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            Y +      A  +F  +  KN VSW A+++  A N+    AL   REM +    PN VT
Sbjct: 216 FYFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVT 275

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG-CLNLAQNVFN-I 118
           L  +L ACAR  F++ GKEIH    R+G +     + AL  +Y +CG  L+LA+ +F   
Sbjct: 276 LIALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGS 335

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           S RD V ++ +I  Y++  +  ++L LF++MR    + + V+ +  ISAC NL++ K G 
Sbjct: 336 SLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGG 395

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IHG  ++  +   +FV N++++ Y + G +D + KIF  +P +DS +WN++I  YG+ G
Sbjct: 396 VIHGYILKFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHG 455

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HY 297
             + A+  F  M+E GV  D V+++A+L+AC+H GLV +G++ F+++ AD   P  + HY
Sbjct: 456 YGEQALQHFYEMKERGVKLDAVTFLAVLSACNHAGLVTEGQQLFEQVNADCEIPITIEHY 515

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           AC++DL GR+G +EDA+++++ +P++P A IW +L+ +C+++G +++    +  L   +P
Sbjct: 516 ACLIDLHGRSGKLEDALEILRTMPMKPSARIWSSLVSSCKLHGRLDIAESLSSQLIRSEP 575

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQ 401
            +   Y LLS ++AE G+W +  +VRE MK +  +K  G S ++
Sbjct: 576 NNAASYTLLSMIHAEKGRWLDIEQVRETMKLQRLRKCYGFSRIE 619



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 188/365 (51%), Gaps = 11/365 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F  +  ++ ++WN+M+  + QN L ++ALQ++++       P    
Sbjct: 110 MYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLKDFYFLGFLPKPEL 169

Query: 61  LTNVLPACARGHFL--RPGKEIHARIIRKG---LNFDLFLTNALTDMYAKCGCLNLAQNV 115
           L +++  C R   L  R G++IH  ++  G   +   +FL+ A  D Y +CG   +A++V
Sbjct: 170 LASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFRCGDSLMARSV 229

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ +  ++EVS+  +I G +   D   +L+ + EM++ G+  + V+ +  ++ACA    +
Sbjct: 230 FDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVTLIALLAACARPGFV 289

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR-IDLANKIFDCLPVKDSASWNTLILG 233
           K GKEIHG   R+   +    + +++  Y   G+ + LA +IF+   ++D   W+++I  
Sbjct: 290 KYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSSLRDVVLWSSIIGS 349

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
           Y   GE D A+ LF  MR +    + V+ +A+++AC++    + G      +    +  +
Sbjct: 350 YARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGVIHGYILKFGIGFS 409

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
                 ++++  + G ++D+ K+   +P   D+  W +++ A   YG    G  A +H +
Sbjct: 410 IFVCNALINMYAKCGSLDDSRKIFLEMPSR-DSVTWNSMISA---YGLHGYGEQALQHFY 465

Query: 354 MLKPQ 358
            +K +
Sbjct: 466 EMKER 470



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 175/398 (43%), Gaps = 50/398 (12%)

Query: 41  KALQLVREMPIHNEFPNSV--TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNA 98
           + LQ   ++       NS+   L +V+ AC+  HF   G ++H      G   D  ++N+
Sbjct: 47  QTLQFFTQLHFSAHHFNSIPFVLPSVIKACSFTHFHAFGTQLHCLAFITGSYTDPIVSNS 106

Query: 99  LTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157
           +  MYAK   +  A+ VF+ +  RD +++N +I  Y Q     E+L +  +   LG    
Sbjct: 107 IISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLKDFYFLGFLPK 166

Query: 158 VVSFMGAISACANLAAI--KQGKEIHGVTI---RKHLHTHLFVANSILDFYTRSGRIDLA 212
                  +S C     +  + G++IHG+ +   R  +   +F++ + +DFY R G   +A
Sbjct: 167 PELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFRCGDSLMA 226

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
             +FD + VK+  SW  +I G     + D A+  +  M+ +GV  + V+ IA+L AC+  
Sbjct: 227 RSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVTLIALLAACARP 286

Query: 273 GLVEKGKKY--------FDEMQADSVKPTEMHYAC------------------------M 300
           G V+ GK+         FD   + S     ++  C                        +
Sbjct: 287 GFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSSLRDVVLWSSI 346

Query: 301 VDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +    R G  + A+KL   +     EP+     A++ AC    + + G     H ++LK 
Sbjct: 347 IGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHG--GVIHGYILKF 404

Query: 358 QHCGYYIL----LSNMYAEAGKWDEASKVRELMKSREA 391
              G+ I     L NMYA+ G  D++ K+   M SR++
Sbjct: 405 G-IGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDS 441


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 146/421 (34%), Positives = 241/421 (57%), Gaps = 2/421 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+    +A  +F  ++ ++++ WNA+++  +      +A  +   +       N  T
Sbjct: 347 MYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTT 406

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL + A        +++HA   + G  FD  + N L D Y KC CL+ A  VF   S
Sbjct: 407 LAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECS 466

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D ++   +I   SQ      ++ LF EM   G++ D       ++ACA+L+A +QGK+
Sbjct: 467 SGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I++   +  F  N+++  Y + G I+ A   F  LP +   SW+ +I G    G 
Sbjct: 527 VHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGH 586

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+ LF  M ++G+  + ++  ++L AC+H GLV++ K+YF+ M +   +  TE HY+
Sbjct: 587 GKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYS 646

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLGRAG ++DA++L+ ++P + +A++WGALLGA R++ + ELG  AAE LF+L+P+
Sbjct: 647 CMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPE 706

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
             G ++LL+N YA +G W+E +KVR+LMK    KK P  SWV+ +D+V  F+V D+    
Sbjct: 707 KSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPM 766

Query: 419 T 419
           T
Sbjct: 767 T 767



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 162/337 (48%), Gaps = 6/337 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K  RP  A  +F  I +   VSW+++V  ++ N L   A+Q    M       N   L
Sbjct: 47  YSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFAL 106

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI--S 119
             VL           G ++HA  +  G   D+F+ NAL  MY   G ++ A+ VF+   S
Sbjct: 107 PVVLKCVPDAQL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGS 163

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+N L+  Y +   C +++ +F EM   G++     F   ++AC     I  G++
Sbjct: 164 ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQ 223

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + +R      +F AN+++D Y + GR+D+A+ IF+ +P  D  SWN LI G  + G 
Sbjct: 224 VHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGH 283

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              AI L   M+  G+  +     +IL AC+  G  + G++    M   +    +     
Sbjct: 284 DHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVG 343

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
           +VD+  +   ++DA+K+   +    D  +W AL+  C
Sbjct: 344 LVDMYAKNHFLDDAMKVFDWMS-HRDLILWNALISGC 379



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 165/370 (44%), Gaps = 35/370 (9%)

Query: 19  AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78
           +E+N VSWN +++ + +N     A+Q+  EM      P     + V+ AC     +  G+
Sbjct: 163 SERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGR 222

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTS 137
           ++HA ++R G   D+F  NAL DMY K G +++A  +F  +   D VS+N LI G     
Sbjct: 223 QVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 282

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
               ++ L  +M+  G+  +V      + ACA   A   G++IHG  I+ +  +  ++  
Sbjct: 283 HDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGV 342

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
            ++D Y ++  +D A K+FD +  +D   WN LI G    G  D A ++F  +R++G+G 
Sbjct: 343 GLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGV 402

Query: 258 DPVSYIAILTACSH----------GGLVEKGKKYFDEMQADSVKPTEMHYAC-------- 299
           +  +  A+L + +             L EK    FD    + +  +    +C        
Sbjct: 403 NRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVF 462

Query: 300 -------------MVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVE 343
                        M+  L +    E A+KL   +    +EPD  +  +LL AC      E
Sbjct: 463 EECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYE 522

Query: 344 LGAWAAEHLF 353
            G     HL 
Sbjct: 523 QGKQVHAHLI 532



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 158/342 (46%), Gaps = 2/342 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  R   AS +F  + + ++VSWNA+++    N  + +A++L+ +M      PN   
Sbjct: 246 MYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFM 305

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L+++L ACA       G++IH  +I+   + D ++   L DMYAK   L+ A  VF+ +S
Sbjct: 306 LSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMS 365

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD + +N LI G S      E+ S+F  +R  G+  +  +    + + A+L A    ++
Sbjct: 366 HRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQ 425

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H +  +        V N ++D Y +   +  A ++F+     D  +  ++I        
Sbjct: 426 VHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDH 485

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + AI LF  M   G+  DP    ++L AC+     E+GK+    +              
Sbjct: 486 GEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNA 545

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           +V    + G +EDA     +LP E     W A++G    +G+
Sbjct: 546 LVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGH 586



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 128/284 (45%), Gaps = 8/284 (2%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T++  L   A    L PG  +HA +++ G  F   L N L   Y+KC     A+ VF+ I
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHANLLKSG--FLASLRNHLISFYSKCRRPCCARRVFDEI 63

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
                VS++ L+  YS       ++  F  MR  G+  +  + +  +  C   A +  G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFA-LPVVLKCVPDAQL--GA 120

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD-CLPVKDSASWNTLILGYGML 237
           ++H + +     + +FVAN+++  Y   G +D A ++FD     +++ SWN L+  Y   
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN 180

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
            +   AI +F  M   G+      +  ++ AC+    ++ G++    +     +      
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTA 240

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
             +VD+  + G ++ A  + + +P + D   W AL+  C + G+
Sbjct: 241 NALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNGH 283


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 152/418 (36%), Positives = 239/418 (57%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQ--NRLEL-KALQLVREMPIHNEFPN 57
           MYAK     +A  +F   A  ++V +NAM+  +++   + EL +AL + R+M      P+
Sbjct: 394 MYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPS 453

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
            +T  ++L A A    L   K+IH  + + GLN D+F  +AL D+Y+ C CL  ++ VF+
Sbjct: 454 LLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFD 513

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  +D V +N +  GY Q S+  E+L+LF E++L   + D  +F   ++A  NLA+++ 
Sbjct: 514 EMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQL 573

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+E H   +++ L  + ++ N++LD Y + G  + A+K FD    +D   WN++I  Y  
Sbjct: 574 GQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYAN 633

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            GE   A+ + E M  +G+  + ++++ +L+ACSH GLVE G K F+ M    ++P   H
Sbjct: 634 HGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEH 693

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y CMV LLGRAG +  A +LI+ +P +P A +W +LL  C   GNVEL   AAE   +  
Sbjct: 694 YVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSD 753

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P+  G + +LSN+YA  G W EA KVRE MK     K PG SW+    EV  F+  D+
Sbjct: 754 PKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDK 811



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 212/430 (49%), Gaps = 41/430 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K  R   A  LF+ +  KNI+SW  +++ + QN L  +A++L   M      P+    
Sbjct: 294 YVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYAC 353

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
           +++L +CA  H L  G ++HA  I+  L  D ++TN+L DMYAKC CL  A+ VF+I + 
Sbjct: 354 SSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAA 413

Query: 121 RDEVSYNILIVGYSQTS---DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
            D V +N +I GYS+     +  E+L++F +MR   ++  +++F+  + A A+L ++   
Sbjct: 414 ADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLS 473

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K+IHG+  +  L+  +F  ++++D Y+    +  +  +FD + VKD   WN++  GY   
Sbjct: 474 KQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQ 533

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
            E + A+NLF  ++      D  ++  ++TA  +   V+ G+++  ++    ++      
Sbjct: 534 SENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYIT 593

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLP----------------------------------VE 323
             ++D+  + G  EDA K   +                                    +E
Sbjct: 594 NALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIE 653

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHL--FMLKPQHCGYYILLSNMYAEAGKWDEASK 381
           P+   +  +L AC   G VE G    E +  F ++P+   +Y+ + ++   AG+ ++A +
Sbjct: 654 PNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPE-TEHYVCMVSLLGRAGRLNKARE 712

Query: 382 VRELMKSREA 391
           + E M ++ A
Sbjct: 713 LIEKMPTKPA 722



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/434 (27%), Positives = 201/434 (46%), Gaps = 51/434 (11%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A  +F  + EK+ V+W  M++   +      +LQL  ++   N  P+   L
Sbjct: 193 YLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYIL 252

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           + VL AC+   FL  GK+IHA I+R GL  D  L N L D Y KCG +  A  +FN +  
Sbjct: 253 STVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPN 312

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ +S+  L+ GY Q +   E++ LF+ M   G+K D+ +    +++CA+L A+  G ++
Sbjct: 313 KNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQV 372

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG-- 238
           H  TI+ +L    +V NS++D Y +   +  A K+FD     D   +N +I GY  LG  
Sbjct: 373 HAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQ 432

Query: 239 -EVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG-------- 278
            E+  A+N+F  MR   +    ++++++L A +           HG + + G        
Sbjct: 433 WELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAG 492

Query: 279 ----------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
                           +  FDEM+   +      +A  V    +    E+A+ L   L +
Sbjct: 493 SALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYV----QQSENEEALNLFLELQL 548

Query: 323 ---EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ-HCGYYIL--LSNMYAEAGKW 376
               PD   +  ++ A     +V+LG     H  +LK    C  YI   L +MYA+ G  
Sbjct: 549 SRERPDEFTFANMVTAAGNLASVQLG--QEFHCQLLKRGLECNPYITNALLDMYAKCGSP 606

Query: 377 DEASKVRELMKSRE 390
           ++A K  +   SR+
Sbjct: 607 EDAHKAFDSAASRD 620



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 143/276 (51%), Gaps = 8/276 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           +Y+++     A  +F  + E+N+VSW+ MV+    + +  ++L +  E      + PN  
Sbjct: 88  LYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEY 147

Query: 60  TLTNVLPACA----RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
            L++ + AC+    RG ++    ++ + +++ G + D+++   L D Y K G ++ A+ V
Sbjct: 148 ILSSFIQACSGLDGRGRWMVF--QLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLV 205

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ +  +  V++  +I G  +      SL LF ++    +  D       +SAC+ L  +
Sbjct: 206 FDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFL 265

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           + GK+IH   +R  L     + N ++D Y + GR+  A+K+F+ +P K+  SW TL+ GY
Sbjct: 266 EGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGY 325

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
                   A+ LF +M + G+  D  +  +ILT+C+
Sbjct: 326 KQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCA 361



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 19/299 (6%)

Query: 51  IHNEFPNSVTL------TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104
           ++ +FP+++ +        +L   A    L     +H +II  GL  D +L+N L ++Y+
Sbjct: 31  VNADFPSTIGIRGRREFARLLQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYS 90

Query: 105 KCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFM 162
           + G +  A+ VF  +  R+ VS++ ++   +      ESL +F E  R      +     
Sbjct: 91  RAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILS 150

Query: 163 GAISACANLAAIKQGK----EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
             I AC+ L    +G+    ++    ++      ++V   ++DFY + G ID A  +FD 
Sbjct: 151 SFIQACSGLDG--RGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDA 208

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           LP K + +W T+I G   +G    ++ LF  + ED V  D      +L+ACS    +E G
Sbjct: 209 LPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGG 268

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI--WGALLGA 335
           K+    +    ++        ++D   + G +  A KL   +   P+ NI  W  LL  
Sbjct: 269 KQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGM---PNKNIISWTTLLSG 324


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 149/425 (35%), Positives = 237/425 (55%), Gaps = 34/425 (8%)

Query: 22  NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81
            +V++NAM++ +       +AL++VR M       +  T  +V+ ACA    L+ GK++H
Sbjct: 250 KLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVH 309

Query: 82  ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCS 140
           A ++R+  +F     N+L  +Y KCG  + A+ +F  +  +D VS+N L+ GY  +    
Sbjct: 310 AYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIG 368

Query: 141 ES-------------------------------LSLFSEMRLLGMKHDVVSFMGAISACA 169
           E+                               L LFS M+  G +    +F GAI +CA
Sbjct: 369 EAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCA 428

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
            L A   G++ H   ++    + L   N+++  Y + G ++ A ++F  +P  DS SWN 
Sbjct: 429 VLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNA 488

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-D 288
           LI   G  G    A++++E M + G+  D ++ + +LTACSH GLV++G+KYFD M+   
Sbjct: 489 LIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVY 548

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWA 348
            + P   HYA ++DLL R+G   DA  +I++LP +P A IW ALL  CR++GN+ELG  A
Sbjct: 549 RIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIA 608

Query: 349 AEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQD 408
           A+ LF L P+H G Y+LLSNM+A  G+W+E ++VR+LM+ R  KK   CSW++   +V  
Sbjct: 609 ADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHT 668

Query: 409 FVVND 413
           F+V+D
Sbjct: 669 FLVDD 673



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 170/397 (42%), Gaps = 79/397 (19%)

Query: 18  IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR-GHFLRP 76
           +  ++ V +NAM+  F+ N     A+ L  +M      P++ T  +VL   A      + 
Sbjct: 108 VCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQ 167

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGC----LNLAQNVFN-ISFRDE-------- 123
             + HA  ++ G  +   ++NAL  +Y+KC      L+ A+ VF+ I  +DE        
Sbjct: 168 CVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMT 227

Query: 124 ------------------------VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
                                   V+YN +I GY       E+L +   M   G++ D  
Sbjct: 228 GYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEF 287

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           ++   I ACA    ++ GK++H   +R+   +  F  NS++  Y + G+ D A  IF+ +
Sbjct: 288 TYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHF-DNSLVSLYYKCGKFDEARAIFEKM 346

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
           P KD  SWN L+ GY   G +  A  +F+ M+E  +    +S++ +++  +  G  E+G 
Sbjct: 347 PAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI----LSWMIMISGLAENGFGEEGL 402

Query: 280 KYFDEMQADSVKPTEMHYA-----------------------------------CMVDLL 304
           K F  M+ +  +P +  ++                                    ++ + 
Sbjct: 403 KLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMY 462

Query: 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
            + G++E+A ++ + +P   D+  W AL+ A   +G+
Sbjct: 463 AKCGVVEEARQVFRTMPC-LDSVSWNALIAALGQHGH 498



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 119/254 (46%), Gaps = 19/254 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y  S    EA  +F  + EKNI+SW  M++  A+N    + L+L   M      P     
Sbjct: 361 YVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAF 420

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
           +  + +CA       G++ HA++++ G +  L   NAL  MYAKCG +  A+ VF  +  
Sbjct: 421 SGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPC 480

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
            D VS+N LI    Q    +E++ ++ EM   G++ D ++ +  ++AC++   + QG   
Sbjct: 481 LDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQG--- 537

Query: 181 HGVTIRKHLHTHLFVAN---------SILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTL 230
                RK+  +   V            ++D   RSG+   A  + + LP K +A  W  L
Sbjct: 538 -----RKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEAL 592

Query: 231 ILGYGMLGEVDTAI 244
           + G  + G ++  I
Sbjct: 593 LSGCRVHGNMELGI 606



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 155/390 (39%), Gaps = 86/390 (22%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
           L+  + +H  II  G      + N L D+Y K   LN A+ +F+                
Sbjct: 30  LQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSG 89

Query: 118 ------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
                             +  RD V YN +I G+S  +D   +++LF +M+  G K D  
Sbjct: 90  YCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNF 149

Query: 160 SFMGAISACANLAAI-KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR----IDLANK 214
           +F   ++  A +A   KQ  + H   ++        V+N+++  Y++       +  A K
Sbjct: 150 TFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARK 209

Query: 215 IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED--------------------- 253
           +FD +  KD  SW T++ GY   G  D    L E M ++                     
Sbjct: 210 VFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQE 269

Query: 254 -----------GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA---C 299
                      G+  D  +Y +++ AC+  GL++ GK    ++ A  ++  +  +     
Sbjct: 270 ALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGK----QVHAYVLRREDFSFHFDNS 325

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--LKP 357
           +V L  + G  ++A  + + +P + D   W ALL      G V  G      L    +K 
Sbjct: 326 LVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLS-----GYVSSGHIGEAKLIFKEMKE 379

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           ++   ++++ +  AE G  +E  K+   MK
Sbjct: 380 KNILSWMIMISGLAENGFGEEGLKLFSCMK 409



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 12/150 (8%)

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           +++  + +HG  I         + N ++D Y +S  ++ A ++FD +   D  +  T++ 
Sbjct: 29  SLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVS 88

Query: 233 GYGMLGEVDTAINLFE----AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           GY   G++  A  +FE     MR      D V Y A++T  SH          F +M+ +
Sbjct: 89  GYCASGDITLARGVFEKAPVCMR------DTVMYNAMITGFSHNNDGYSAINLFCKMKHE 142

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
             KP    +A +  L G A + +D  + ++
Sbjct: 143 GFKPDNFTFASV--LAGLALVADDEKQCVQ 170



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     EA  +F  +   + VSWNA++A   Q+    +A+ +  EM      P+ +T
Sbjct: 461 MYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRIT 520

Query: 61  LTNVLPACARGHFLRPGKE 79
           L  VL AC+    +  G++
Sbjct: 521 LLTVLTACSHAGLVDQGRK 539


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 154/451 (34%), Positives = 254/451 (56%), Gaps = 39/451 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +Y +S +   A+  F  + +++IVSWN+M++ ++Q    L+AL +  +M       P++ 
Sbjct: 217 LYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNF 276

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ------ 113
           TL ++L ACA    L  GK+IHA I+R        + NAL  MYAK G + +A+      
Sbjct: 277 TLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHN 336

Query: 114 ---------------------------NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSL 145
                                       +FN +  RD V++  +IVGY Q    +++L L
Sbjct: 337 RTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALEL 396

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           F  M   G + +  +    +S  ++L  ++ GK+IH   I+    +   V N+++  Y +
Sbjct: 397 FRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAK 456

Query: 206 SGRIDLANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
           +G I++A ++FD LP   K+  SW ++I+     G    AINLFE M   G+  D ++Y+
Sbjct: 457 TGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYV 515

Query: 264 AILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
            +L+AC+H GLVE+G+KY++ M +   ++PT  HYACM+DL GRAGL+++A   I+++P+
Sbjct: 516 GVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPI 575

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382
           EPD   WG+LL +C+I+ N +L   AAE L ++ P + G Y+ L+N+Y+  GKW+ A++ 
Sbjct: 576 EPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQT 635

Query: 383 RELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           R+LMK R  +K  G SW+  ++EV  F V D
Sbjct: 636 RKLMKDRGVRKEKGISWIHIKNEVHAFGVED 666



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 204/488 (41%), Gaps = 117/488 (23%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      +  L + + + + VSW A++  + Q  L   A+ +  +M      P+  T+
Sbjct: 86  YAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTV 145

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----- 116
           +NVL +CA    L  G++IH+ +++ GL   + +  +L +MYAKCG   +A+ VF     
Sbjct: 146 SNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTV 205

Query: 117 -NISF--------------------------RDEVSYNILIVGYSQTSDCSESLSLFSEM 149
            NIS                           RD VS+N +I GYSQ     E+L++FS+M
Sbjct: 206 KNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKM 265

Query: 150 -RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN----------- 197
                +K D  +    +SACANL  +  GK+IH   +R    T   V N           
Sbjct: 266 LNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGG 325

Query: 198 ----------------------SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
                                 S+LD YT+ G +  A +IF+ L  +D  +W  +I+GY 
Sbjct: 326 VEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYV 385

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE- 294
             G  + A+ LF  M  +G   +  +  A+L+  S   ++E GK    ++ A ++K  E 
Sbjct: 386 QNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGK----QIHASAIKAGES 441

Query: 295 -----------------------------------MHYACMVDLLGRAGLMEDAVKLIK- 318
                                              + +  M+  L + GL ++A+ L + 
Sbjct: 442 STPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFER 501

Query: 319 --NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-----CGYYILLSNMYA 371
             ++ ++PD   +  +L AC   G VE G    ++  M+   H       +Y  + ++Y 
Sbjct: 502 MLSVGMKPDHITYVGVLSACTHVGLVEQG---RKYYNMMTEVHEIEPTLSHYACMIDLYG 558

Query: 372 EAGKWDEA 379
            AG   EA
Sbjct: 559 RAGLLQEA 566



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 147/339 (43%), Gaps = 40/339 (11%)

Query: 49  MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
           M + N   +S    ++L    R      G+ +H +II+KGL+  ++L N L   YAK G 
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 109 LNLAQNVFN------------------------ISFR--------DEVSYNILIVGYSQT 136
           L  A +VF+                        +S R        D VS+  +IVGY+Q 
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQF 120

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
                ++ +F++M    +     +    +S+CA    +  G++IH   ++  L + + VA
Sbjct: 121 GLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVA 180

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
            S+L+ Y + G   +A  +FD + VK+ ++WN LI  Y   G+ + A + FE M +    
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDR--- 237

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDL---LGRAGLMED 312
            D VS+ ++++  S  G   +    F +M  + S+KP     A ++     L +  + + 
Sbjct: 238 -DIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQ 296

Query: 313 AVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
               I     E    +  AL+      G VE+     EH
Sbjct: 297 IHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEH 335


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 145/416 (34%), Positives = 233/416 (56%), Gaps = 35/416 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F  +  ++ VSWNA++A   QN  E K L L               
Sbjct: 406 MYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLF-------------- 451

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
                              IH RII+  L  D F+  AL DMY+KCG +  A+ + + ++
Sbjct: 452 -------------------IHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLA 492

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N +I G+S      E+   FS+M  +G+  D  ++   +  CANL  ++ GK+
Sbjct: 493 EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQ 552

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+K L +  +++++++D Y++ G +     IF+  P +D  +WN ++ GY   G 
Sbjct: 553 IHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGL 612

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A+ +FE M+ + V  +  +++A+L AC H GLVEKG  YF  M ++  + P   HY+
Sbjct: 613 GEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYS 672

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VD++GR+G +  A++LI+ +P E DA IW  LL  C+I+GNVE+   AA  +  L+P+
Sbjct: 673 CVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPE 732

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               Y+LLSN+YA AG W+E +K+R++M+    KK PGCSW++ + EV  F+V D+
Sbjct: 733 DSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDK 788



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 187/397 (47%), Gaps = 25/397 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  +   +   FH++ EKN VSW+A++A   QN      L+L +EM       +  T
Sbjct: 218 MYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQST 277

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +V  +CA    LR G ++H   ++     D+ +  A  DMY KC  L+ AQ +FN + 
Sbjct: 278 FASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLP 337

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             +  SYN +IVGY+++                G+  D VS  GA  ACA +    +G +
Sbjct: 338 NHNLQSYNAIIVGYARSDK--------------GLGLDEVSLSGAFRACAVIKGDLEGLQ 383

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG++++    +++ VAN+ILD Y + G +  A  +F+ +  +D+ SWN +I  +   G 
Sbjct: 384 VHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGN 443

Query: 240 VDTAINLFEAMR--EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
            +  ++LF   R  +  +G D    IA++   S  G++EK +K  D +   +V    + +
Sbjct: 444 EEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTV----VSW 499

Query: 298 ACMVDLLGRAGLMEDAVKLIKN---LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
             ++         E+A K       + V+PD   +  +L  C     VELG      +  
Sbjct: 500 NAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIK 559

Query: 355 LKPQHCGYY-ILLSNMYAEAGKWDEASKVRELMKSRE 390
            + Q   Y    L +MY++ G   +   + E   +R+
Sbjct: 560 KELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRD 596



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 181/391 (46%), Gaps = 27/391 (6%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A  LF  + E+++VSWN++++ +  N    K + +  +M       +  T 
Sbjct: 118 YAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTF 177

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
             VL +C+       G +IH   ++ G + D+   +AL DMYAKC  L+ +   F ++  
Sbjct: 178 AVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPE 237

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ VS++ +I G  Q  D    L LF EM+  G+     +F     +CA L+A++ G ++
Sbjct: 238 KNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQL 297

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  ++    T + +  + LD Y +   +  A K+F+ LP  +  S+N +I+GY      
Sbjct: 298 HGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGY------ 351

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC- 299
                   A  + G+G D VS      AC+    V KG     ++   S+K       C 
Sbjct: 352 --------ARSDKGLGLDEVSLSGAFRACA----VIKGDLEGLQVHGLSMKSLCQSNICV 399

Query: 300 ---MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
              ++D+ G+ G + +A  + + + V  DA  W A++ A    GN E       H  ++K
Sbjct: 400 ANAILDMYGKCGALVEACLVFEEM-VSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIK 458

Query: 357 PQ---HCGYYILLSNMYAEAGKWDEASKVRE 384
            +        I L +MY++ G  ++A K+ +
Sbjct: 459 SRLGLDSFVGIALIDMYSKCGMMEKAEKLHD 489



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 157/386 (40%), Gaps = 55/386 (14%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
           T +++   C+    L PGK+ HAR+I       +F+TN L  MY KC  L  A  VF+  
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 118 ------------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
                                         +  RD VS+N LI GY    D  + + +F 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           +M  +G   D  +F   + +C++L     G +IHG+ ++      +   +++LD Y +  
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
           ++D + + F  +P K+  SW+ +I G     ++   + LF+ M++ GVG    ++ ++  
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFR 283

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE---- 323
           +C+    +  G +              +     +D+  +   + DA KL  +LP      
Sbjct: 284 SCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQS 343

Query: 324 -----------------PDANIWGALLGACRIYGNVE-LGAWAAEHLFMLKPQHCGYYIL 365
                             + ++ GA      I G++E L         + +   C    +
Sbjct: 344 YNAIIVGYARSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAI 403

Query: 366 LSNMYAEAGKWDEASKVRELMKSREA 391
           L +MY + G   EA  V E M SR+A
Sbjct: 404 L-DMYGKCGALVEACLVFEEMVSRDA 428


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 148/414 (35%), Positives = 244/414 (58%), Gaps = 10/414 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +  R  EA  LF  + ++N+VSW AMV+ +AQN     A +L   MP  NE    V+ 
Sbjct: 184 YCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPERNE----VSW 239

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T +L    +   +   +E+   +     +  L   N +   + + G ++ A++VF+ +  
Sbjct: 240 TAMLFGYIQAGRIEDAEELFNAMP----DHPLAACNGMIVGFGQQGMVDAAKSVFDRMCE 295

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD+ +++ +I  Y Q     E+LS F EM  +G++ +  S +  ++ CA LA +  G+E+
Sbjct: 296 RDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREV 355

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  +R+     ++  ++++  Y + G +D A ++F     KD   WN++I GY   G  
Sbjct: 356 HGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLG 415

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYAC 299
           + A+++F+ MR  G+  D ++YI  LTACS+ G V++G+  F+ M+  S +KP   HYAC
Sbjct: 416 EEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYAC 475

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGRAGL+++A+ LIK +PVEPDA IWGAL+GACR++ N E+   +A+ L  L+P +
Sbjct: 476 MVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLLELEPGN 535

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G Y+LLS++Y  +G+W++AS +R+ + SR   K+ GCSW++    V  F   D
Sbjct: 536 AGPYVLLSHIYTSSGRWEDASNMRKFISSRHLNKSLGCSWIEYDKRVHLFKSGD 589



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 149/308 (48%), Gaps = 30/308 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLEL-KALQLVREMPIHNEFPNSVT 60
           Y ++  P  A  +FH +  +++ S+NA+++  +  R  L  A   +  +P     P+ V+
Sbjct: 58  YFRNHLPDAALRVFHRMPTRDLASYNALISGLSLRRHTLPDAAAALATIPYP---PSVVS 114

Query: 61  LTNVLPACARGHFLRPGKEIHARII-RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
            T++L    R   L    ++  ++  R  +++ + L   L       G ++ A+ +F+ +
Sbjct: 115 FTSLLRGYVRHGLLADAIQLFRQMPERNHISYTVLLGGFL-----DAGRVDEARKLFDEM 169

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D V++  ++ GY Q     E+ +LF EM     K +VVS+   +S  A    +   +
Sbjct: 170 PAKDVVAWTAMLSGYCQVGRVDEARTLFDEMP----KRNVVSWTAMVSGYAQNGQVNLAR 225

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++  V   ++  +      ++L  Y ++GRI+ A ++F+ +P    A+ N +I+G+G  G
Sbjct: 226 KLFEVMPERNEVSW----TAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQG 281

Query: 239 EVDTAINLFEAM--REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            VD A ++F+ M  R+DG      ++ AI+ A      + +    F EM    ++P   +
Sbjct: 282 MVDAAKSVFDRMCERDDG------TWSAIIKAYEQNEFLMEALSTFREMLHIGIRP---N 332

Query: 297 YACMVDLL 304
           Y  ++ +L
Sbjct: 333 YPSVISIL 340



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 118/269 (43%), Gaps = 44/269 (16%)

Query: 97  NALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155
           NA     A+ G +  A+  F  +  R   SYN L+ GY +      +L +F  M      
Sbjct: 21  NARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMP----T 76

Query: 156 HDVVSFMGAIS-----------ACANLAAIKQGKEIHGVT--IRKHLHTHLFVANSILDF 202
            D+ S+   IS           A A LA I     +   T  +R ++  H  +A++I  F
Sbjct: 77  RDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVR-HGLLADAIQLF 135

Query: 203 -----------------YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
                            +  +GR+D A K+FD +P KD  +W  ++ GY  +G VD A  
Sbjct: 136 RQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEART 195

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           LF+ M +  V    VS+ A+++  +  G V   +K F+ M     +  E+ +  M+    
Sbjct: 196 LFDEMPKRNV----VSWTAMVSGYAQNGQVNLARKLFEVMP----ERNEVSWTAMLFGYI 247

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLG 334
           +AG +EDA +L   +P  P A   G ++G
Sbjct: 248 QAGRIEDAEELFNAMPDHPLAACNGMIVG 276



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 134/336 (39%), Gaps = 59/336 (17%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
           A++     A   F  +  +   S+NA++A + +N L   AL++   MP  +    +  ++
Sbjct: 28  ARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPTRDLASYNALIS 87

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFR 121
            +     R H L       A I        +    +L   Y + G L  A  +F  +  R
Sbjct: 88  GL---SLRRHTLPDAAAALATIPYPP---SVVSFTSLLRGYVRHGLLADAIQLFRQMPER 141

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + +SY +L+ G+       E+  LF EM       DVV++   +S               
Sbjct: 142 NHISYTVLLGGFLDAGRVDEARKLFDEMP----AKDVVAWTAMLSG-------------- 183

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
                                Y + GR+D A  +FD +P ++  SW  ++ GY   G+V+
Sbjct: 184 ---------------------YCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVN 222

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC-- 299
            A  LFE M E     + VS+ A+L      G +E  ++ F+ M      P     AC  
Sbjct: 223 LARKLFEVMPER----NEVSWTAMLFGYIQAGRIEDAEELFNAM------PDHPLAACNG 272

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           M+   G+ G M DA K + +   E D   W A++ A
Sbjct: 273 MIVGFGQQG-MVDAAKSVFDRMCERDDGTWSAIIKA 307



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +FH    K++V WN+M+  +AQ+ L  +AL +  +M +    P+ +T
Sbjct: 377 MYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGIT 436

Query: 61  LTNVLPACARGHFLRPGKEIHARI-IRKGLNFDLFLTNALTDMYAKCGCLNLA 112
               L AC+    ++ G++I   +  + G+   L     + D+  + G ++ A
Sbjct: 437 YIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEA 489



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 20/199 (10%)

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
           AN+ +    R+G ++ A   F+ +P++ +AS+N L+ GY      D A+ +F  M     
Sbjct: 20  ANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPTR-- 77

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG---RAGLMED 312
             D  SY A+++     GL  +     D   A +  P          LL    R GL+ D
Sbjct: 78  --DLASYNALIS-----GLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLAD 130

Query: 313 AVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH--CGYYILLSNMY 370
           A++L + +P E +   +  LLG     G V+     A  LF   P      +  +LS  Y
Sbjct: 131 AIQLFRQMP-ERNHISYTVLLGGFLDAGRVD----EARKLFDEMPAKDVVAWTAMLSG-Y 184

Query: 371 AEAGKWDEASKVRELMKSR 389
            + G+ DEA  + + M  R
Sbjct: 185 CQVGRVDEARTLFDEMPKR 203


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 150/445 (33%), Positives = 245/445 (55%), Gaps = 33/445 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y KS++  +A  LF  + E+++VSW  M++ + Q     ++L+L ++M   N  P+ V L
Sbjct: 312 YVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVAL 371

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----- 116
             VL AC        G+ +HA I+  G+  D FL NAL D+YAKCG L+ A   F     
Sbjct: 372 VTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPC 431

Query: 117 ---------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                       I  +D VS+N ++  Y +    +ES  +F +M
Sbjct: 432 KSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKM 491

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
           +   +K D  + +  +S+CA + A+  G  ++    +  +     +  +++D Y + G +
Sbjct: 492 QSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCV 551

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           ++A +IF  +  K+   W  ++  Y M G+   AI+L+  M E GV  D V++IA+L AC
Sbjct: 552 EMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAAC 611

Query: 270 SHGGLVEKGKKYFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           SHGGLV++G KYF+++++  ++ PT  HY CMVDLLGR G +E+ VK I+ +P+EPD +I
Sbjct: 612 SHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSI 671

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
           W +L+ ACR + NVEL   A + L  + P + G ++LLSN+YA+AG+WD+ SKVR  +  
Sbjct: 672 WSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHE 731

Query: 389 REAKKNPGCSWVQTRDEVQDFVVND 413
               K PG + ++    V +FV ++
Sbjct: 732 TGVPKQPGFTMIEQNGVVHEFVASN 756



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 200/459 (43%), Gaps = 77/459 (16%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K  +  E   LF  +  ++++SWN M++ +    +  +AL L  EM +    P+ +T
Sbjct: 177 LYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEIT 236

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
           + +++  CA+   L  GK +H  I+   L     L N L DMY+KCG ++ A  + +   
Sbjct: 237 MVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCD 296

Query: 118 -------------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLF 146
                                          ++ R  VS+  ++ GY Q     ESL LF
Sbjct: 297 ESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELF 356

Query: 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
            +MR   +  D V+ +  +SAC +L     G+ +H   +   +    F+ N++LD Y + 
Sbjct: 357 QQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKC 416

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE------------------ 248
           G++D A + F+ LP K +ASWN+++ G+   G VD A + F                   
Sbjct: 417 GKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYV 476

Query: 249 -------------AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
                         M+   V  D  + I++L++C+  G +  G      ++ + +    M
Sbjct: 477 KHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAM 536

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM- 354
               ++D+ G+ G +E A ++   + +E +  +W A++ A  + G     A  A  L++ 
Sbjct: 537 LGTALIDMYGKCGCVEMAYEIFTQI-IEKNVFVWTAMMAAYAMEGQ----ALEAIDLYLE 591

Query: 355 -----LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
                +KP H  +  LL+   +  G  DE  K    ++S
Sbjct: 592 MEERGVKPDHVTFIALLAAC-SHGGLVDEGYKYFNKLRS 629



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 158/356 (44%), Gaps = 36/356 (10%)

Query: 20  EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79
           E   + WN ++ N  +     + L+    M       +  T   ++ AC +   ++ G E
Sbjct: 95  EPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSE 154

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSD 138
           +H RI++ G   +  L N L  +Y+KCG L     +F  ++ RD +S+N +I  Y     
Sbjct: 155 VHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGM 214

Query: 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
             E+L LF EM + G+  D ++ +  +S CA L  ++ GK +H   +   L     + N 
Sbjct: 215 YREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNC 274

Query: 199 ILDFYTRSG---------------------------------RIDLANKIFDCLPVKDSA 225
           ++D Y++ G                                 +ID A ++FD +  +   
Sbjct: 275 LVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLV 334

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           SW T++ GY   G    ++ LF+ MR + V  D V+ + +L+AC H    + G+     +
Sbjct: 335 SWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFI 394

Query: 286 QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL-GACRIYG 340
               +         ++DL  + G +++A++  + LP +  A+ W ++L G CR  G
Sbjct: 395 VTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAAS-WNSMLDGFCRSGG 449



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 129/277 (46%), Gaps = 5/277 (1%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + ++L +C+    +R    IHA +I   L  D  +T+ +         L+ A  + + S 
Sbjct: 38  IIDLLKSCSN---IREFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSH 94

Query: 121 RDE-VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             E + +N L+    +     E L  +  M   G+  D+ +F   I AC     +K G E
Sbjct: 95  EPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSE 154

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  ++     +  + N+++  Y++ G++    ++F+ +  +D  SWNT+I  Y + G 
Sbjct: 155 VHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGM 214

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A++LF+ M   GV  D ++ +++++ C+    +E GK+    +  + +        C
Sbjct: 215 YREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNC 274

Query: 300 MVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGA 335
           +VD+  + G M++A  L+      E D  +W  L+  
Sbjct: 275 LVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSG 311


>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
 gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
          Length = 1530

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 142/397 (35%), Positives = 236/397 (59%), Gaps = 2/397 (0%)

Query: 9    AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
             +A  LF  + +KN VSW+ M+  F +    ++  +  +E+  +   P++ TL  V+ AC
Sbjct: 1132 TDAYALFDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKAC 1191

Query: 69   ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRDEVSYN 127
                 L  G+ IH  +++ GL+ D F+  AL DMYAKC  +  A+ +F++   +D V++ 
Sbjct: 1192 RDTVALDMGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWT 1251

Query: 128  ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            ++I GY++  +  ESL LF  +R  G   D ++ +  ++ACA L A+ + + +H    R 
Sbjct: 1252 VMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRN 1311

Query: 188  HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                 + +  +++D Y + G +D A +IFD +  K+  SW+ +I  YG  G+   A+ LF
Sbjct: 1312 RFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELF 1371

Query: 248  EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGR 306
              M   G+  + ++++++L ACSH GLVE G      M ++  V+P   H+ CMVDLLGR
Sbjct: 1372 PMMLSSGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGR 1431

Query: 307  AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366
            AG + +A + I+N+ VE D  +W +LLGACRI+  ++L   AA+ L  L+PQ+ G YILL
Sbjct: 1432 AGQLTEAFRFIENMTVEKDEGLWSSLLGACRIHKRIDLAEKAAKSLLELQPQNPGNYILL 1491

Query: 367  SNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTR 403
            SN+YA AG+W + +K+R+LM  R+ KK PG +W++ +
Sbjct: 1492 SNIYANAGQWKDVAKIRDLMTKRKLKKIPGYTWIELK 1528



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 122/250 (48%), Gaps = 11/250 (4%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MYAK     +A  LF  +  K++V+W  M+  +A+     ++L L   +      P+ + 
Sbjct: 1225 MYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHLREEGFVPDKIA 1284

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            + +++ ACA+   +   + +H  + R   + D+ L  A+ DMYAKCG ++ A+ +F N+ 
Sbjct: 1285 MVSIVNACAKLGAMNKARFVHEYVNRNRFSLDVILGTAMIDMYAKCGDVDSAREIFDNMH 1344

Query: 120  FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             ++ +S++ +I  Y       ++L LF  M   G+  + ++F+  + AC++   ++ G  
Sbjct: 1345 HKNVISWSAMIAAYGYHGQGKKALELFPMMLSSGILPNNITFVSLLYACSHAGLVEDGLT 1404

Query: 180  I-----HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KDSASWNTLILG 233
            +         +R  +  H      ++D   R+G++  A +  + + V KD   W++L+  
Sbjct: 1405 LLSLMWESFGVRPDIKHH----TCMVDLLGRAGQLTEAFRFIENMTVEKDEGLWSSLLGA 1460

Query: 234  YGMLGEVDTA 243
              +   +D A
Sbjct: 1461 CRIHKRIDLA 1470



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 20/198 (10%)

Query: 165  ISACANLAAIKQGKEIHG-VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
            IS   N   I Q K++H  +T    L+ +L VAN +L  Y     +  A  +FD +P K+
Sbjct: 1086 ISTLLNCKNICQIKQLHALITTNSVLYNNLTVANKLLYVYVHHKCLTDAYALFDEMPQKN 1145

Query: 224  SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK---- 279
              SW+ +I G+  +GE       F+ +  +GV  D  +   ++ AC     ++ G+    
Sbjct: 1146 PVSWSIMIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTVALDMGRLIHC 1205

Query: 280  ---KYFDEMQADSVKPTEMHYAC--MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
               KY   +          H+ C  +VD+  +  ++EDA  L   +P + D   W  ++G
Sbjct: 1206 VVLKYGLHLD---------HFVCAALVDMYAKCKVIEDAKLLFDVMPSK-DLVTWTVMIG 1255

Query: 335  ACRIYGNVELGAWAAEHL 352
                 GN +      +HL
Sbjct: 1256 GYAECGNAKESLVLFDHL 1273


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 145/422 (34%), Positives = 246/422 (58%), Gaps = 11/422 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+ S     AS LF    +K++V+W AM+  F +N    +A+    EM       N +T+
Sbjct: 148 YSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTV 207

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +VL A  +   +R G+ +H   +  G +  D+F+ ++L DMY KC C + AQ VF+ + 
Sbjct: 208 VSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMP 267

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV----SFMGAISACANLAAIK 175
            R+ V++  LI GY Q+    + + +F EM    +K DV     +    +SACA++ A+ 
Sbjct: 268 SRNVVTWTALIAGYVQSRCFDKGMLVFEEM----LKSDVAPNEKTLSSVLSACAHVGALH 323

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           +G+ +H   I+  +  +     +++D Y + G ++ A  +F+ L  K+  +W  +I G+ 
Sbjct: 324 RGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFA 383

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
             G    A +LF  M    V  + V+++A+L+AC+HGGLVE+G++ F  M+   +++P  
Sbjct: 384 AHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKA 443

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYACMVDL GR GL+E+A  LI+ +P+EP   +WGAL G+C ++ + ELG +AA  +  
Sbjct: 444 DHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIK 503

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           L+P H G Y LL+N+Y+E+  WDE ++VR+ MK ++  K+PG SW++ + ++ +F+  D 
Sbjct: 504 LQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDD 563

Query: 415 MK 416
            K
Sbjct: 564 KK 565



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 164/337 (48%), Gaps = 12/337 (3%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFA-----QNRLELKALQLVREMPIHNEFPNSVTLTNVL 65
           A  L   +   +I  W++++ +F+       RL   A    R M  +   P+  T   +L
Sbjct: 55  ARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLA---YRHMRRNGVIPSRHTFPPLL 111

Query: 66  PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEV 124
            A  +     P  + HA I++ GL+ D F+ N+L   Y+  G  + A  +F+    +D V
Sbjct: 112 KAVFKLRDSNPF-QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVV 170

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           ++  +I G+ +    SE++  F EM+  G+  + ++ +  + A   +  ++ G+ +HG+ 
Sbjct: 171 TWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLY 230

Query: 185 IRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
           +    +   +F+ +S++D Y +    D A K+FD +P ++  +W  LI GY      D  
Sbjct: 231 LETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKG 290

Query: 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303
           + +FE M +  V  +  +  ++L+AC+H G + +G++    M  +S++        ++DL
Sbjct: 291 MLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDL 350

Query: 304 LGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
             + G +E+A+ + + L  E +   W A++     +G
Sbjct: 351 YVKCGCLEEAILVFERLH-EKNVYTWTAMINGFAAHG 386



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 117/234 (50%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K S   +A  +F  +  +N+V+W A++A + Q+R   K + +  EM   +  PN  T
Sbjct: 249 MYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKT 308

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L++VL ACA    L  G+ +H  +I+  +  +      L D+Y KCGCL  A  VF  + 
Sbjct: 309 LSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLH 368

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++  ++  +I G++      ++  LF  M    +  + V+FM  +SACA+   +++G+ 
Sbjct: 369 EKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRR 428

Query: 180 IH-GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS-ASWNTLI 231
           +   +  R ++         ++D + R G ++ A  + + +P++ +   W  L 
Sbjct: 429 LFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALF 482


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 141/402 (35%), Positives = 238/402 (59%), Gaps = 2/402 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  ++  ++V W  M+  + QN   L AL+L  +    N  PNSVT
Sbjct: 277 MYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVT 336

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +  VL A A+   L  G+ IH   ++ GL     + NAL DMYAKC  ++ A  +F +IS
Sbjct: 337 IATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSIS 396

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V++N ++ GY++ + C+++L LF +M L G   D +S + A+SA   L  +  GK 
Sbjct: 397 NKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKS 456

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            HG  ++    ++++V+ ++L+ Y + G +  A ++FD +  ++S +W  +I GYGM G+
Sbjct: 457 FHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGD 516

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              +I+LF  M +DGV  + V++ +IL+ CSH G+V   K+YFD M Q  ++ P+  HYA
Sbjct: 517 SAGSIDLFGEMLKDGVHPNDVAFTSILSTCSHTGMVTAAKRYFDSMAQHFNITPSMKHYA 576

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+L RAG +E+A++ I N+P++ D ++WGA L  C ++  ++ G  A + + +L P+
Sbjct: 577 CMVDVLARAGNLEEALEFIDNMPMQADTSVWGAFLHGCELHSRLQFGEEAIKRMMVLHPE 636

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
               Y+L+SN+Y   G W+++  +R  M+ +   K PG S +
Sbjct: 637 RPDLYVLISNLYTSNGMWEKSQAIRRWMQEKGLVKLPGYSSI 678



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 173/342 (50%), Gaps = 2/342 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+     A  +F  I  +N+VSW +M++   QN      L L  +M   N  P+  T
Sbjct: 176 MYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYT 235

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  V+ AC+    L  G+ +H  +I++GL  + F++ AL DMY KCG L  AQ VF+ +S
Sbjct: 236 IATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELS 295

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           + D V +  +IVGY+Q  +  ++L LF + +   +  + V+    +SA A L  +  G+ 
Sbjct: 296 YIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRS 355

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG+ ++  L  +  V N+++D Y +   +  AN+IF  +  KD  +WN+++ GY     
Sbjct: 356 IHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNM 415

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ LF+ M   G   D +S +  L+A    G +  GK +       +          
Sbjct: 416 CNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTA 475

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           +++L  + G +  A ++   +  + ++  W A++G   + G+
Sbjct: 476 LLNLYNKCGDLPSARRVFDEMN-DRNSVTWCAMIGGYGMQGD 516



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 117/260 (45%), Gaps = 11/260 (4%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDM---YAKCGCLNLAQNVFN 117
           L  +LP+C     LR    +HAR++       L    A T +   YA  G L  A+ VF+
Sbjct: 32  LLRLLPSCGTLPSLRV---LHARLLTHTQGLLLGSLRARTKLLSCYAALGDLASARMVFD 88

Query: 118 ISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRL---LGMKHDVVSFMGAISACANLAA 173
            + R D  SY +++    Q    +E+++L  +MR         D      A+ AC   A 
Sbjct: 89  GTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLALKACIRSAD 148

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
              G  +H   ++       FV NS++D Y ++G ++ A K+F+ +P ++  SW +++ G
Sbjct: 149 YGYGTRLHCDAVKVG-GADGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSG 207

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
               G     + LF  MR+D V     +   ++TACS    + +G+     +    +   
Sbjct: 208 CVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSN 267

Query: 294 EMHYACMVDLLGRAGLMEDA 313
               A ++D+  + G +EDA
Sbjct: 268 SFISAALLDMYVKCGELEDA 287


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 148/415 (35%), Positives = 233/415 (56%), Gaps = 40/415 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK     EA  LF +++ +++V+WNAM+A  +   L   A+QL+ +M      PNS T+
Sbjct: 154 YAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTI 213

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
             VLP C                                       CL  A+ +F++   
Sbjct: 214 VGVLPTCQ--------------------------------------CLLYARKIFDVMGV 235

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+EVS++ +I GY  +    E+L +F  M+L G+  D+ + +G + AC++LAA++ G   
Sbjct: 236 RNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCS 295

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  I +   T   + N+++D Y++ G+I  A ++F+ +   D  SWN +I+GYG+ G  
Sbjct: 296 HGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLG 355

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             A+ LF  +   G+  D +++I +L++CSH GLV +G+ +FD M  D S+ P   H  C
Sbjct: 356 MEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCIC 415

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVD+LGRAGL+++A   I+N+P EPD  IW ALL ACRI+ N+ELG   ++ +  L P+ 
Sbjct: 416 MVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPES 475

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            G ++LLSN+Y+ AG+WD+A+ +R   K    KK PGCSW++    V  FV  D+
Sbjct: 476 TGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQ 530



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 164/360 (45%), Gaps = 40/360 (11%)

Query: 49  MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
           MP+  E  N+    ++L AC +   L   K+IH   ++   N D  + + LT +Y  C  
Sbjct: 1   MPLRFEVKNNYL--HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQ 58

Query: 109 LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
           + LA+ +F+ I     + +N +I  Y+       ++ L+  M  LG++ +  ++   + A
Sbjct: 59  VVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKA 118

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C+ L AI+ G EIH       L + +FV  +++DFY + G +  A ++F  +  +D  +W
Sbjct: 119 CSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAW 178

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           N +I G  + G  D A+ L   M+E+G+  +  + + +L  C     +   +K FD M  
Sbjct: 179 NAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQ---CLLYARKIFDVMGV 235

Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVEL 344
            +    E+ ++ M+     +  M++A+ + + +    ++PD      +L AC        
Sbjct: 236 RN----EVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPAC-------- 283

Query: 345 GAWAAEHLFMLKPQHC--GYYIL------------LSNMYAEAGKWDEASKVRELMKSRE 390
                 HL  L+   C  GY I+            L +MY++ GK   A +V   M   +
Sbjct: 284 -----SHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHD 338



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 158/371 (42%), Gaps = 42/371 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y   ++   A  LF  I   +++ WN ++  +A N     A+ L   M      PN  T
Sbjct: 52  LYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYT 111

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
              VL AC+    +  G EIH+     GL  D+F+  AL D YAKCG L  AQ +F ++S
Sbjct: 112 YPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS 171

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++N +I G S    C +++ L  +M+  G+  +  + +G +  C  L        
Sbjct: 172 HRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCL-------- 223

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
                                  Y R        KIFD + V++  SW+ +I GY     
Sbjct: 224 ----------------------LYAR--------KIFDVMGVRNEVSWSAMIGGYVASDC 253

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +  A+++F  M+  G+  D  + + +L ACSH   ++ G      +         +    
Sbjct: 254 MKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNA 313

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG-NVE-LGAWAAEHLFMLKP 357
           ++D+  + G +  A ++   +    D   W A++    I+G  +E LG +       LKP
Sbjct: 314 LIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKP 372

Query: 358 QHCGYYILLSN 368
               +  LLS+
Sbjct: 373 DDITFICLLSS 383



 Score = 44.7 bits (104), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 42/78 (53%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  + + A  +F+ +   +IVSWNAM+  +  + L ++AL L  ++      P+ +T
Sbjct: 317 MYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDIT 376

Query: 61  LTNVLPACARGHFLRPGK 78
              +L +C+    +  G+
Sbjct: 377 FICLLSSCSHSGLVMEGR 394


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 146/416 (35%), Positives = 238/416 (57%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+     A ++F +  E+N ++W+AM+  ++QN     A+++  +M      P   T
Sbjct: 264 MYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFT 323

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL AC+    L  GK+ H  +++ G    +++ +AL DMYAKCGC+  A+  FN  S
Sbjct: 324 LVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFS 383

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V +  ++ G+ Q  +  ++L L++ M   G+  + ++    + ACA LAA++ GK+
Sbjct: 384 ELDIVLWTAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQ 443

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++        V +++   Y++ G ++    +F  +P +D  +WN++I G+   G 
Sbjct: 444 LHTQILKFGFGLGASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGR 503

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + AINLFE M+ +G   DPV++I +L ACSH GLV++G  YF  M  D  + P   HYA
Sbjct: 504 GNDAINLFEEMKLEGTAPDPVTFINVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYA 563

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+L RAG++ +A   I+++ ++    +W  +LGACR   + ++GA+A E L  L   
Sbjct: 564 CMVDILSRAGMLSEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEKLMDLGTG 623

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               YILLSN+YA   KW++  +VR LMK     K+PGCSWV+    V  FVV ++
Sbjct: 624 DSAAYILLSNIYAAQRKWNDVERVRYLMKLVGVSKDPGCSWVELNSRVHVFVVGEQ 679



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 175/339 (51%), Gaps = 11/339 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM----PIH-NEF 55
           MY K     +A  +F  +  +N VSW AMVA +A  +   +A +L R+M    P+H NEF
Sbjct: 162 MYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQMLGECPLHKNEF 221

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
                 T VL A +    L  G ++H  +++ G+   + + N+L  MYAK GC++ A +V
Sbjct: 222 ----VATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHV 277

Query: 116 FNISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F  S  R+ ++++ +I GYSQ  +   ++ +FS+M   G      + +G ++AC+++  +
Sbjct: 278 FESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTL 337

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
            +GK+ HG+ ++      ++V ++++D Y + G I  A + F+     D   W  ++ G+
Sbjct: 338 MEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGH 397

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              GE + A+ L+  M ++GV  + ++  ++L AC+    +E GK+   ++         
Sbjct: 398 VQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGA 457

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
              + +  +  + G +ED + + + +P   D   W +++
Sbjct: 458 SVGSALSTMYSKCGNLEDGMVVFRRMP-HRDVIAWNSII 495



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 166/344 (48%), Gaps = 19/344 (5%)

Query: 19  AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSVTLTNVLPACARGHFLRPG 77
           A +++ SWN+++   + +R  L AL   R M   +   P+  +      A AR H    G
Sbjct: 78  AARDVASWNSLLNPLSHHR-PLAALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAG 136

Query: 78  KEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
             +HA   +    + ++F++ AL +MY K G +  AQ VF+ +  R+EVS+  ++ GY+ 
Sbjct: 137 AVVHALACKLPSASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAA 196

Query: 136 TSDCSESLSLFSEMRLLG----MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
                E+  LF +M  LG     K++ V+    +SA +    +  G ++HG+ ++  +  
Sbjct: 197 RKCSQEAFELFRQM--LGECPLHKNEFVA-TAVLSAISVPLGLPMGVQVHGLVVKDGMVG 253

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            + V NS++  Y ++G +D A  +F+    ++S +W+ +I GY   G  ++A+ +F  M 
Sbjct: 254 FVSVENSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMH 313

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
             G      + + +L ACS  G + +GK+    M     +      + +VD+  + G + 
Sbjct: 314 AAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIG 373

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           DA +       E D  +W A+     + G+V+ G +  E   ML
Sbjct: 374 DAKECFNQFS-ELDIVLWTAM-----VTGHVQNGEF--EQALML 409



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 133/320 (41%), Gaps = 38/320 (11%)

Query: 45  LVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104
           + R  P+   F   V+ T  +    R    R G+ +HA  ++ G +    ++N+L   Y+
Sbjct: 1   MARAPPL--AFTGQVSHTQFIEHLRRASRPRDGEALHAWALKSGSSSHAPVSNSLITFYS 58

Query: 105 KCGCLNL--AQNVFN---ISFRDEVSYNILIVGYSQ---TSDCSESLSLFSEMRLLGMKH 156
               L L  A  VF     + RD  S+N L+   S     +  S   S+ S   +L   H
Sbjct: 59  SFPRLFLPAAFAVFADIPAAARDVASWNSLLNPLSHHRPLAALSHFRSMLSSSTILPSPH 118

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKI 215
              SF  A +A A   +   G  +H +  +     +++FV+ ++L+ Y + G I  A  +
Sbjct: 119 ---SFAAAFTAAARAHSASAGAVVHALACKLPSASSNVFVSTALLNMYCKLGLIPDAQLV 175

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM-REDGVGYDPVSYIAILTACS---- 270
           FD +P ++  SW  ++ GY        A  LF  M  E  +  +     A+L+A S    
Sbjct: 176 FDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQMLGECPLHKNEFVATAVLSAISVPLG 235

Query: 271 -------HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
                  HG +V+ G   F  ++             +V +  +AG M+ A  + ++   E
Sbjct: 236 LPMGVQVHGLVVKDGMVGFVSVENS-----------LVTMYAKAGCMDAAFHVFES-SKE 283

Query: 324 PDANIWGALLGACRIYGNVE 343
            ++  W A++      GN E
Sbjct: 284 RNSITWSAMITGYSQNGNAE 303


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 160/425 (37%), Positives = 248/425 (58%), Gaps = 15/425 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM------PIHNE 54
           MY    RP +A   F  I   N V   AM +   +N L    L + R M       + +E
Sbjct: 133 MYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCMRNNLVYTTLSIFRSMVASGSAGVVDE 192

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL--A 112
               V L+       RG  +  G  IHA + + GL+    + N + D YAK G  +L  A
Sbjct: 193 AAALVALSASARVPDRG--ITGG--IHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAA 248

Query: 113 QNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACAN 170
           + +F++  RD VS+N +I  Y+Q    +E+L L+S+M ++G  ++ + V+    + ACA+
Sbjct: 249 RKLFDMMDRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAH 308

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
             AI+ GK IH   +R  L  +++V  S++D Y++ G++++A K F  +  K+  SW+ +
Sbjct: 309 AGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAM 368

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-S 289
           I GYGM G    A+++F  MR+ G+  + +++I +L ACSH GL+ +G+ +++ M+ +  
Sbjct: 369 IAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFG 428

Query: 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAA 349
           ++P   HY CMVDLLGRAG +++A  LIK + V+PDA +WGALL ACRIY NVEL    A
Sbjct: 429 IEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICA 488

Query: 350 EHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
           E LF L   + GYY+LLSN+YAEAG W E  ++R L+K+R  +K PG S V+ + +   F
Sbjct: 489 ERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHLF 548

Query: 410 VVNDR 414
            V D+
Sbjct: 549 YVGDK 553



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 138/307 (44%), Gaps = 24/307 (7%)

Query: 77  GKEIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYS 134
           G+++H   +R GL   D +  +AL  MY  C     A+  F+ I   + V    +  G  
Sbjct: 107 GRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCM 166

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG--KEIHGVTIRKHLHTH 192
           + +    +LS+F  M   G    V      ++  A+     +G    IH +  +  L   
Sbjct: 167 RNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDGQ 226

Query: 193 LFVANSILDFYTRSGRIDL--ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
             VAN+I+D Y + G  DL  A K+FD +  +D  SWNT+I  Y   G    A+ L+  M
Sbjct: 227 TGVANTIIDAYAKGGGHDLGAARKLFDMMD-RDVVSWNTMIALYAQNGLSTEALGLYSKM 285

Query: 251 REDG--VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
              G  V  + V+  A+L AC+H G ++ GK+  +++    ++        +VD+  + G
Sbjct: 286 LIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCG 345

Query: 309 LMEDAVKLIKNLPVEPDANI--WGALLGACRIYGNVELGAWAAEHLFM------LKPQHC 360
            +E A K  + +  +   NI  W A++    ++G  +     A H+F       LKP + 
Sbjct: 346 KVEMAWKAFQKIKGK---NILSWSAMIAGYGMHGYGQ----EALHVFTDMRKSGLKPNYI 398

Query: 361 GYYILLS 367
            +  +L+
Sbjct: 399 TFITVLA 405


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 154/447 (34%), Positives = 255/447 (57%), Gaps = 34/447 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAKS    EA  +F+++ ++N V+W  +++ F Q     ++++L  +M       +   
Sbjct: 334 LYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFA 393

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  ++  C     L  G+++H+  ++ G    + ++N+L  MYAKC  L  A+ +F  ++
Sbjct: 394 LATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMN 453

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMR---------LLG----------------- 153
            +D VS+  +I  YSQ  + +++   F  M          +LG                 
Sbjct: 454 EKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKV 513

Query: 154 ------MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
                 ++ D V+++     CA+L A K G +I G T++  L     VAN+++  Y++ G
Sbjct: 514 MLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCG 573

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
           RI  A K+FD L VKD  SWN +I GY   G    AI +F+ + + G   D +SY+A+L+
Sbjct: 574 RILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLS 633

Query: 268 ACSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
            CSH GLV++GK YFD M+ A ++ P   H++CMVDLLGRAG + +A  LI ++P++P A
Sbjct: 634 GCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTA 693

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
            +WGALL AC+I+GN EL   AA+H+F L     G Y+L++ +YA+AGK D+++++R+LM
Sbjct: 694 EVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLM 753

Query: 387 KSREAKKNPGCSWVQTRDEVQDFVVND 413
           + +  KKNPG SW++  ++V  F  +D
Sbjct: 754 RDKGIKKNPGYSWMEVDNKVHVFKADD 780



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 160/301 (53%), Gaps = 6/301 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K+     A  LF ++ E+++VSWN MV+  +Q+    +AL +V +M       +S T 
Sbjct: 234 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 293

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T+ L ACAR   LR GK++HA++IR   + D ++ +AL ++YAK GC   A+ VFN +  
Sbjct: 294 TSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHD 353

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ V++ +LI G+ Q    +ES+ LF++MR   M  D  +    IS C +   +  G+++
Sbjct: 354 RNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQL 413

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H + ++      + V+NS++  Y +   +  A  IF  +  KD  SW ++I  Y  +G V
Sbjct: 414 HSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNV 473

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYAC 299
             A   F+ M E  V    +++ A+L A    G  E G + +  M ++  V+P  + Y  
Sbjct: 474 AKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVT 529

Query: 300 M 300
           +
Sbjct: 530 L 530



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 147/301 (48%), Gaps = 33/301 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSVT 60
           YAK  R ++A  LF  +  +++ SWN +++ + Q+R  L +L+    M    + +PN+ T
Sbjct: 101 YAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFT 160

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---- 116
           L   + +C    +     ++ A + +     D  +  AL DM+ +CG ++LA  +F    
Sbjct: 161 LACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIK 220

Query: 117 ----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                       ++  RD VS+N+++   SQ+    E+L +  +
Sbjct: 221 EPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVD 280

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M+  G++ D  ++  +++ACA L++++ GK++H   IR   H   +VA+++++ Y +SG 
Sbjct: 281 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGC 340

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
              A  +F+ L  +++ +W  LI G+   G    ++ LF  MR + +  D  +   +++ 
Sbjct: 341 FKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISG 400

Query: 269 C 269
           C
Sbjct: 401 C 401



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/345 (19%), Positives = 135/345 (39%), Gaps = 66/345 (19%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF--NI 118
             + L +C     L   + +H R++  GL   +FL N L   Y  CG L+ A+ +   +I
Sbjct: 27  FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDI 86

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEM--------------------------RLL 152
           +  + +++N+++ GY++    S+++ LF  M                            L
Sbjct: 87  AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFL 146

Query: 153 GMKH------DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
            M        +  +   A+ +C  L       ++  +  +        VA +++D + R 
Sbjct: 147 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRC 206

Query: 207 GRIDLANK-------------------------------IFDCLPVKDSASWNTLILGYG 235
           G +DLA++                               +FD +P +D  SWN ++    
Sbjct: 207 GAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 266

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G V  A+++   M+  GV  D  +Y + LTAC+    +  GK+   ++  +       
Sbjct: 267 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPY 326

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
             + +V+L  ++G  ++A  +  +L  + +   W  L+     YG
Sbjct: 327 VASALVELYAKSGCFKEAKGVFNSLH-DRNNVAWTVLISGFLQYG 370


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 148/420 (35%), Positives = 254/420 (60%), Gaps = 8/420 (1%)

Query: 2   YAKSSRPAEASYLFHNIAE-KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y+K     EA  +F+ + E ++ VSWN+M+  + Q++   KAL L +EM       +  T
Sbjct: 183 YSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFT 242

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG-CLNL--AQNVFN 117
           L +VL A      L  G++ H ++I+ G + +  + + L D Y+KCG C  +  ++ VF 
Sbjct: 243 LASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQ 302

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSE-SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
            I   D V +N +I GYS   + SE ++  F +M+ +G + D  SF+   SAC+NL++  
Sbjct: 303 EILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPS 362

Query: 176 QGKEIHGVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           Q K+IHG+ I+ H+ ++ + V N+++  Y +SG +  A  +FD +P  ++ S+N +I GY
Sbjct: 363 QCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGY 422

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
              G    A+ L++ M + G+  + ++++A+L+AC+H G V++G++YF+ M+    ++P 
Sbjct: 423 AQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPE 482

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY+CM+DLLGRAG +E+A + I  +P +P +  W ALLGACR + N+ L   AA  L 
Sbjct: 483 AEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELM 542

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +++P     Y++L+NMYA+A KW+E + VR+ M+ +  +K PGCSW++ + +   FV  D
Sbjct: 543 VMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAED 602



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 196/434 (45%), Gaps = 57/434 (13%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK S+   A  LF  I + + VS+N +++ +A  R    A+ L + M       +  TL
Sbjct: 84  YAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTL 143

Query: 62  TNVLPACA-RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--I 118
           + ++ AC  R   +   K++H   +  G +    + NA    Y+K G L  A +VF    
Sbjct: 144 SGLIAACCDRVDLI---KQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMD 200

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RDEVS+N +IV Y Q  + +++L+L+ EM   G K D+ +    ++A  +L  +  G+
Sbjct: 201 ELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGR 260

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL---ANKIFDCLPVKDSASWNTLILGYG 235
           + HG  I+   H +  V + ++DFY++ G  D    + K+F  +   D   WNT+I GY 
Sbjct: 261 QFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYS 320

Query: 236 MLGEV-DTAINLFEAMREDGVGYDPVSYIAILTACS-----------HG----------- 272
           M  E+ + A+  F  M+  G   D  S++ + +ACS           HG           
Sbjct: 321 MNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNR 380

Query: 273 --------------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
                         G ++  +  FD M     +   + + CM+    + G   +A+ L +
Sbjct: 381 ISVNNALISLYYKSGNLQDARWVFDRMP----ELNAVSFNCMIKGYAQHGHGTEALLLYQ 436

Query: 319 NL---PVEPDANIWGALLGACRIYGNVELGAW---AAEHLFMLKPQHCGYYILLSNMYAE 372
            +    + P+   + A+L AC   G V+ G       +  F ++P+   +Y  + ++   
Sbjct: 437 RMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPE-AEHYSCMIDLLGR 495

Query: 373 AGKWDEASKVRELM 386
           AGK +EA +  + M
Sbjct: 496 AGKLEEAERFIDAM 509



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 147/335 (43%), Gaps = 46/335 (13%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ---------NVFN------- 117
           L  GK +HA  ++  +    +L+N   ++Y+KCG L+ A+         NVF+       
Sbjct: 24  LFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKA 83

Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
                           I   D VSYN LI GY+   +   ++ LF  MR LG + D  + 
Sbjct: 84  YAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTL 143

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL-P 220
            G I+AC +   +   K++H  ++     ++  V N+ + +Y++ G +  A  +F  +  
Sbjct: 144 SGLIAACCDRVDLI--KQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDE 201

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
           ++D  SWN++I+ YG   E   A+ L++ M   G   D  +  ++L A +    +  G++
Sbjct: 202 LRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQ 261

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAG---LMEDAVKLIKNLPVEPDANIWGALLGACR 337
           +  ++            + ++D   + G    M D+ K+ + + + PD  +W  ++    
Sbjct: 262 FHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEI-LSPDLVVWNTMISGYS 320

Query: 338 IYGNVELGAWAAEHLFML-----KPQHCGYYILLS 367
           +  N EL   A +    +     +P  C +  + S
Sbjct: 321 M--NEELSEEAVKSFRQMQRIGHRPDDCSFVCVTS 353



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y KS    +A ++F  + E N VS+N M+  +AQ+    +AL L + M      PN +T
Sbjct: 390 LYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKIT 449

Query: 61  LTNVLPACARGHFLRPGKE 79
              VL ACA    +  G+E
Sbjct: 450 FVAVLSACAHCGKVDEGQE 468


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 139/417 (33%), Positives = 243/417 (58%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  LF +++E+N+V+WNA+V+ ++ +    +A+ L   M       +  T
Sbjct: 166 MYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYT 225

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +++PA      L+ G  IH  IIR G   D  +  AL D+Y    C++ A  VF+ +S
Sbjct: 226 IMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMS 285

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMR-LLGMKHDVVSFMGAISACANLAAIKQGK 178
            +D  ++ +++ G+S       ++  F++M  +  +K D ++ MG +S+C++  A++QG+
Sbjct: 286 VKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGR 345

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H + I+     ++FV ++++D Y   G ++ A + F  +  KD   WN +I G GM G
Sbjct: 346 RVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNG 405

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               AI+LF  M+  G+  D  +++++L ACSH G+V +G + F  M +   V P   HY
Sbjct: 406 YGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHY 465

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           AC++D+LGRAG ++ A   I N+P +PD +++  LLGACRI+GN++LG   ++ +F ++P
Sbjct: 466 ACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEP 525

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
              GYY+LLSNMYA AG W+     R  ++S+  KK+PG S ++   E+  F+  ++
Sbjct: 526 NDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEK 582



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 174/329 (52%), Gaps = 3/329 (0%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           A+A  +FH+   KN+VSW  +++  A+N   ++A+ + REM + N  PN+VT+++VLPA 
Sbjct: 73  ADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAF 132

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYN 127
           A    +R  K +H   +R G   ++F+  AL DMY+K GC+ +A+ +F ++S R+ V++N
Sbjct: 133 ANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWN 192

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            ++ GYS      E++ LF+ MR  G+  D  + M  I A  ++  ++ G  IHG  IR 
Sbjct: 193 AIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRT 252

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                  +  +++D Y     +D A+++F  + VKD A+W  ++ G+      D AI  F
Sbjct: 253 GYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHF 312

Query: 248 EAMRE-DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
             M     +  D ++ + IL++CSH G +++G++                 + ++D+   
Sbjct: 313 NKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYAN 372

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            G +EDA +    +  E D   W A++  
Sbjct: 373 CGNLEDAKRFFYGMG-EKDVVCWNAMIAG 400



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 137/261 (52%), Gaps = 2/261 (0%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVG 132
           L+P ++IHA+II  GL  + FL+N+L + Y  CG L  A+ +F +  +++ VS+ ILI G
Sbjct: 37  LKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISG 96

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
            ++     E++ +F EM +   K + V+    + A ANL  I+  K +H   +R     +
Sbjct: 97  LAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGN 156

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +FV  +++D Y++ G + +A ++F+ +  ++  +WN ++ GY   G  + AI+LF  MR 
Sbjct: 157 VFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRR 216

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
            G+  D  + ++++ A    G ++ G      +     +  +     ++D+      ++D
Sbjct: 217 KGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDD 276

Query: 313 AVKLIKNLPVEPDANIWGALL 333
           A ++   + V+ D   W  +L
Sbjct: 277 AHRVFSEMSVK-DVAAWTLML 296



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 1/173 (0%)

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           L  +K  ++IH   I   L  + F++NS+++ Y   G +  A +IF   P K+  SW  L
Sbjct: 34  LKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTIL 93

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           I G         AI++F  M       + V+  ++L A ++ GL+   K           
Sbjct: 94  ISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGF 153

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           +        +VD+  + G M  A +L +++  E +   W A++     +G  E
Sbjct: 154 EGNVFVETALVDMYSKFGCMGVARQLFESMS-ERNVVTWNAIVSGYSDHGFSE 205


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 150/416 (36%), Positives = 234/416 (56%), Gaps = 2/416 (0%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            +Y+KS +  EA +LF N    ++ SWNAM+  +  +    KAL+L   M    E  N +T
Sbjct: 1052 VYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQIT 1111

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            L N   A      L+ GK+I A ++++G N DLF+ + + DMY KCG +  A+ +FN I 
Sbjct: 1112 LANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIP 1171

Query: 120  FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
              D+V++  +I G  +      +L  +  MRL  ++ D  +F   + AC+ L A++QG++
Sbjct: 1172 SPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQ 1231

Query: 180  IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            IH  T++ +     FV  S++D Y + G I+ A  +F        ASWN +I+G    G 
Sbjct: 1232 IHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGN 1291

Query: 240  VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
             + A+  FE M+  GV  D V++I +L+ACSH GLV +  + F  MQ    ++P   HY+
Sbjct: 1292 AEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYS 1351

Query: 299  CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            C+VD L RAG + +A K+I ++P E  A+++  LL ACR+  + E G   AE L  L+P 
Sbjct: 1352 CLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPS 1411

Query: 359  HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
                Y+LLSN+YA A +W+  +  R +M+    KK+PG SWV  +++V  FV  DR
Sbjct: 1412 DSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDR 1467



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 180/351 (51%), Gaps = 15/351 (4%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MY K+   + A  +F  + E ++VSWN M++  A + LE  ++ +  ++      P+  T
Sbjct: 950  MYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFT 1009

Query: 61   LTNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
            + +VL AC+  G       +IHA  ++ G+  D F++  L D+Y+K G +  A+ +F N 
Sbjct: 1010 VASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQ 1069

Query: 119  SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
               D  S+N ++ GY  + D  ++L L+  M+  G + + ++   A  A   L  +KQGK
Sbjct: 1070 DGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGK 1129

Query: 179  EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +I  V +++  +  LFV + +LD Y + G ++ A +IF+ +P  D  +W T+I G    G
Sbjct: 1130 QIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENG 1189

Query: 239  EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK------P 292
            + + A+  +  MR   V  D  ++  ++ ACS    +E+G+    ++ A++VK      P
Sbjct: 1190 QEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGR----QIHANTVKLNCAFDP 1245

Query: 293  TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
              M    +VD+  + G +EDA  L K       A+ W A++     +GN E
Sbjct: 1246 FVM--TSLVDMYAKCGNIEDARGLFKRTNTSRIAS-WNAMIVGLAQHGNAE 1293



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 165/343 (48%), Gaps = 11/343 (3%)

Query: 22   NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81
            ++++WN  ++ F Q     +A+    +M       + +T   +L   A  + L  GK+IH
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 82   ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCS 140
              ++R GL+  + + N L +MY K G ++ A+ VF  ++  D VS+N +I G + +    
Sbjct: 930  GIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEE 989

Query: 141  ESLSLFSEMRLLGMKHDVVSFMGAISACANLAA-IKQGKEIHGVTIRKHLHTHLFVANSI 199
             S+ +F ++   G+  D  +    + AC++L        +IH   ++  +    FV+ ++
Sbjct: 990  CSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTL 1049

Query: 200  LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
            +D Y++SG+++ A  +F      D ASWN ++ GY + G+   A+ L+  M+E G   + 
Sbjct: 1050 IDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQ 1109

Query: 260  VSYIAILTACSHGGLVEKGKKYFDEMQADSVKP----TEMHYACMVDLLGRAGLMEDAVK 315
            ++      A   GGLV  G K   ++QA  VK          + ++D+  + G ME A +
Sbjct: 1110 ITLANAAKAA--GGLV--GLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARR 1165

Query: 316  LIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            +   +P  PD   W  ++  C   G  E   +   H+ + K Q
Sbjct: 1166 IFNEIP-SPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQ 1207



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 5/188 (2%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS---FRDEVSYNILIVGY 133
           GK  HARI+  G + D FLTN L  MY+KCG L+ A+ +F+ +    RD V++N ++  +
Sbjct: 645 GKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAH 704

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           +  +   +   LF  +R   +     +       C   A+    + +HG  ++  L   +
Sbjct: 705 ADKA--RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDV 762

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
           FVA ++++ Y + GRI  A  +FD + ++D   WN ++  Y   G    A+ LF      
Sbjct: 763 FVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRT 822

Query: 254 GVGYDPVS 261
           G+  D V+
Sbjct: 823 GLRPDDVT 830



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 144/346 (41%), Gaps = 35/346 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQN-RLELKALQLVREMPIHNEFPN 57
           MY+K    + A  LF    +  +++V+WNA+++  A   R      +L+R   +      
Sbjct: 670 MYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADKARDGFHLFRLLRRSFVS---AT 726

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             TL  V   C         + +H   ++ GL +D+F+  AL ++YAK G +  A+ +F+
Sbjct: 727 RHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFD 786

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  RD V +N+++  Y  T    E+L LFSE    G++ D V+       C     +K 
Sbjct: 787 GMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTL------CTLARVVKS 840

Query: 177 GKEIHGVTIR--KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
            + +    ++  K   T LF+ +   D                     D  +WN  +  +
Sbjct: 841 KQNVLEWQLKQLKAYGTKLFMYDDDDDG-------------------SDVIAWNKTLSWF 881

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              GE   A++ F  M    V  D ++++ +L+  +    +E GK+    +    +    
Sbjct: 882 LQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVV 941

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
               C++++  + G +  A  +   +  E D   W  ++  C + G
Sbjct: 942 SVGNCLINMYVKTGSVSRARTVFWQMN-EVDLVSWNTMISGCALSG 986



 Score = 38.1 bits (87), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP--VKDSASWNTLILGY 234
           GK  H   +    H   F+ N+++  Y++ G +  A K+FD  P   +D  +WN ++  +
Sbjct: 645 GKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAH 704

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
               +     +LF  +R   V     +   +   C
Sbjct: 705 A--DKARDGFHLFRLLRRSFVSATRHTLAPVFKMC 737


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 160/444 (36%), Positives = 247/444 (55%), Gaps = 31/444 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F  +  K+ VSWNA++A   QN    K L ++  M      P+  T
Sbjct: 427 MYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYT 486

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             +VL ACA G  L  G EIH  I++ G+  + ++ ++L DMY+KCG ++ A+ + N  F
Sbjct: 487 FGSVLKACA-GDSLNHGMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHNKIF 545

Query: 121 ----------------------RDE------VSYNILIVGYSQTSDCSESLSLFSEMRLL 152
                                 +D       VS+N +I GY       ++   F+ M  +
Sbjct: 546 IGIGDSNTYSEHPETIEEPKGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEM 605

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G+  D  ++   +  CANLA+I  GK+IH   I+K L   +++ ++++D Y++ G +  +
Sbjct: 606 GITPDKFTYSTVLDTCANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDS 665

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
             +F+  P++D  +WN +I GY   G  + AI LFE+M    +  +  +++++L AC+H 
Sbjct: 666 RLMFEKAPIRDFVTWNAMICGYAHHGMGEEAIKLFESMVLMNIMPNHATFVSLLRACAHM 725

Query: 273 GLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
           GLVE+G  YF  M+ +  + P   HY+ MVD+LG++G +E A++LI+ +P E D  IW  
Sbjct: 726 GLVERGLDYFHMMKKEYGLDPRLEHYSNMVDILGKSGEVEKALELIQEMPFEADDVIWRT 785

Query: 332 LLGACRI-YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390
           LL AC+I   NVE    AA  L  L PQ    YILLSN+YA+AG WD+AS++R  M+S +
Sbjct: 786 LLSACKINRNNVEAAEVAANALLRLDPQDSSTYILLSNIYADAGMWDKASELRTAMRSDK 845

Query: 391 AKKNPGCSWVQTRDEVQDFVVNDR 414
            KK PGCSWV+ RDE   F+V D+
Sbjct: 846 LKKEPGCSWVEIRDEFHTFLVGDK 869



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 165/317 (52%), Gaps = 2/317 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R  E+  +F+ + +KN +SW+A++A   QN      L++ +EM       +   
Sbjct: 225 MYAKCKRLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSI 284

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             +VL +CA    LR G ++HA  ++     D  +  A  DMYAKC  +  AQ +F++S 
Sbjct: 285 YASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSE 344

Query: 121 RDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
              + SYN +I GYSQ  +   +L LF ++    +  D +S  GA+ ACA +  + +G +
Sbjct: 345 NLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQ 404

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+  + +   ++ VAN+ +D Y +   +D A ++FD +  KD+ SWN +I  +    E
Sbjct: 405 LHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEE 464

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
               +N+  +M   G+  D  ++ ++L AC+ G  +  G +    +    +       + 
Sbjct: 465 RSKTLNILVSMLRSGMEPDEYTFGSVLKACA-GDSLNHGMEIHTTIVKLGMASNPYIGSS 523

Query: 300 MVDLLGRAGLMEDAVKL 316
           +VD+  + G++++A K+
Sbjct: 524 LVDMYSKCGMIDEAEKI 540



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 161/340 (47%), Gaps = 12/340 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN-EFPNSVT 60
           YA S+    AS  F  +  +++VSWN+M++ F Q    L+++++  EM     EF N  +
Sbjct: 125 YAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFIEMGRSGVEFDNK-S 183

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            + +L  C+     + G +IH   +R G + D+   +AL DMYAKC  L+ +  VF  + 
Sbjct: 184 FSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAMP 243

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ +S++ +I G  Q +     L +F EM+ +G+      +   + +CA L  ++ G +
Sbjct: 244 QKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQ 303

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++        V  + LD Y +   +  A ++FD     +  S+N +I GY     
Sbjct: 304 LHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDN 363

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ LF  + +  +G+D +S    L AC+      KG     ++   + K       C
Sbjct: 364 GFRALLLFRKLSKSSLGFDEISLSGALRACA----TVKGLSEGLQLHGLATKSNFSRNIC 419

Query: 300 M----VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +    +D+ G+   +++A ++   +    DA  W A++ A
Sbjct: 420 VANAFIDMYGKCEALDEACRVFDEMG-RKDAVSWNAIIAA 458



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 134/286 (46%), Gaps = 34/286 (11%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           V   CA+      GK+ HA +I  G    +F++N L  +Y  CG L  A  +F+ +  RD
Sbjct: 55  VFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGMPLRD 114

Query: 123 EVSYNILIVGYS-------------------------------QTSDCSESLSLFSEMRL 151
            VS+N +I GY+                               QT +  ES+ +F EM  
Sbjct: 115 VVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFIEMGR 174

Query: 152 LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211
            G++ D  SF   +  C+ L   K G +IHG+ +R    T +   +++LD Y +  R+D 
Sbjct: 175 SGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDE 234

Query: 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271
           +  +F  +P K+  SW+ +I G      +D  + +F+ M++ GVG     Y ++L +C+ 
Sbjct: 235 SFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCAT 294

Query: 272 GGLVEKGKK-YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
              +  G + +   +++D VK   +  A + D+  +   M+DA +L
Sbjct: 295 LPDLRLGTQLHAHALKSDFVKDGIVRTATL-DMYAKCNNMQDAQRL 339



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 91/228 (39%), Gaps = 41/228 (17%)

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
           V +F      CA   A + GK+ H   I       +FV+N +L  Y   G +  A K+FD
Sbjct: 49  VANFSFVFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFD 108

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            +P++D  SWN +I GY    ++  A   FE M       D VS+ ++L+     G   +
Sbjct: 109 GMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTR----DVVSWNSMLSGFLQTGENLE 164

Query: 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
             K F EM                   GR+G             VE D   +  +L  C 
Sbjct: 165 SVKVFIEM-------------------GRSG-------------VEFDNKSFSVILKVCS 192

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYI---LLSNMYAEAGKWDEASKV 382
           I  N +LG     H   L+  +    +    L +MYA+  + DE+  V
Sbjct: 193 ILENYKLGTQI--HGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTV 238


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 156/437 (35%), Positives = 249/437 (56%), Gaps = 25/437 (5%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +S++ ++A  LF+ +  KN+VSWN M+  +AQN     A+ L  +MP  N    + T+
Sbjct: 140 YIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWN-TV 198

Query: 62  TNVLPACARGHFLR------PGKEIH------ARIIRKGLNF-------DLFLTNALTDM 102
            ++L  C R    R      P +++       A ++ + L+        DL   N +   
Sbjct: 199 MSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLDEALDLFERMPERDLPSWNTMITG 258

Query: 103 YAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVS 160
             + G L  A+ +FN +  ++ +S+  +I G  Q  +  E+L +FS M    G K +  +
Sbjct: 259 LIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGT 318

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD--C 218
           F+  + AC+NLA + +G+++H +  +       FV +++++ Y++ G +  A K+FD   
Sbjct: 319 FVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGM 378

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
              +D  SWN +I  Y   G    AIN F+ MR+ G   D V+Y+ +L+ACSH GLVE+G
Sbjct: 379 TSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEG 438

Query: 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
            KYFDE+  D S+   E HYAC+VDL GRAG +++A   I+ L  +P A +WGALL  C 
Sbjct: 439 LKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCN 498

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           ++ NV++G  AA+ L  ++P++ G Y+LLSN+YA  GKW EA++VR  MK +  KK PGC
Sbjct: 499 VHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGC 558

Query: 398 SWVQTRDEVQDFVVNDR 414
           SW++  + V  FVV D+
Sbjct: 559 SWIEVGNRVHVFVVGDK 575



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 125/296 (42%), Gaps = 63/296 (21%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLEL-------------------- 40
           M A+  R  EA  LF  + E++++SW AM+A      L+L                    
Sbjct: 201 MLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLDEALDLFERMPERDLPSWNTMITGLI 260

Query: 41  ------KALQLVREMPIHNEF--------------------------------PNSVTLT 62
                 +A +L  EMP  N                                  PN  T  
Sbjct: 261 QNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFV 320

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---IS 119
           +VL AC+    L  G+++H  I +       F+ +AL +MY+KCG L  A+ +F+    S
Sbjct: 321 SVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTS 380

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
            RD VS+N +I  Y+      E+++ F EMR  G K D V+++G +SAC++   +++G K
Sbjct: 381 QRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLK 440

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILG 233
               +   + +         ++D   R+GR+  A    + L  K SA  W  L+ G
Sbjct: 441 YFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAG 496



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 16/194 (8%)

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N ++   ++ GRI  A ++FD +   D  +W T+I GY   G ++ A  LF+  R D   
Sbjct: 71  NWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFD--RVDA-K 127

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            + V++ A++        +   +K F+EM   +V    + +  M+D   + G ++ A+ L
Sbjct: 128 KNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNV----VSWNTMIDGYAQNGRIDSAMYL 183

Query: 317 IKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376
            + +P E +   W  ++      G +E     A  LF   P+      ++S     AG  
Sbjct: 184 FEKMP-ERNVVSWNTVMSMLAQCGRIE----EARRLFDRMPERD----VISWTAMIAGLL 234

Query: 377 DEASKVRELMKSRE 390
           DEA  + E M  R+
Sbjct: 235 DEALDLFERMPERD 248


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 145/421 (34%), Positives = 240/421 (57%), Gaps = 8/421 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A   F  +  +++V WNAMV  +AQ       L+  R M   +  P+  T+
Sbjct: 181 YLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTV 240

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
           T VL   A    L  G+ IH   ++ G +  + ++N+L DMY KC C+  A  +F +   
Sbjct: 241 TGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMRE 300

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D  S+N ++  + Q  D   +L L   M   G++ D+V+    + AC++LAA+  G+EI
Sbjct: 301 KDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREI 360

Query: 181 HGVTIRKHLHTH------LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           HG  I   L         + + N+++D Y + G +  A+ +F+ +  KD ASWN +I+GY
Sbjct: 361 HGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGY 420

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
           GM G  + A+ +F  M E  +  D V+++ +L+ACSH G V +G+ +  +M++   V PT
Sbjct: 421 GMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPT 480

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY C++D+LGRAG +++A +L   +P+E +  +W ALL ACR++ +  L   AA+ +F
Sbjct: 481 IEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVF 540

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            L+P+HCG Y+L+SN+Y   G+++E  +VR  M+ +  +K PGCSW++ ++ V  FV  D
Sbjct: 541 ELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSAD 600

Query: 414 R 414
           R
Sbjct: 601 R 601



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 128/240 (53%), Gaps = 9/240 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  + EK+I SWN++V+   Q       L+L+  M      P+ VT
Sbjct: 281 MYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVT 340

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF------DLFLTNALTDMYAKCGCLNLAQN 114
           +T VLPAC+    L  G+EIH  +I  GL        D+ L NA+ DMYAKCG +  A  
Sbjct: 341 VTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHL 400

Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           VF  +S +D  S+NI+I+GY      +E+L +FS M  + +K D V+F+G +SAC++   
Sbjct: 401 VFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGF 460

Query: 174 IKQGKEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
           + QG+        K+ +   +     ++D   R+G++D A ++   +P++ +   W  L+
Sbjct: 461 VSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALL 520



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNV 115
           N  T    L A A    L  GKEIH+ ++  G LN  L +T +L +MY+KC  +N A ++
Sbjct: 36  NLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSIT-SLINMYSKCNQMNFALSI 94

Query: 116 FNISFRD--EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           F+    +    ++N +I G+       E    + +MR  G+  D  +F  AI AC ++  
Sbjct: 95  FSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLE 154

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           IK+   IHG+  +  L   +F+ +++++ Y + G ++ A   F+ LP++D   WN ++ G
Sbjct: 155 IKK---IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNG 211

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK---KYFDEMQADSV 290
           Y  +G+ +  +  F  M ++ V     +   +L+  +  G +  G+    +  +M  DS 
Sbjct: 212 YAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSG 271

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                    ++D+ G+   +EDA+++ + +  E D   W +++
Sbjct: 272 VAVS---NSLIDMYGKCKCIEDALEIFEMMR-EKDIFSWNSIV 310



 Score = 45.8 bits (107), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 90/202 (44%), Gaps = 5/202 (2%)

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203
           S+ + ++     +++ + + ++ A A+   + +GKEIH   +            S+++ Y
Sbjct: 23  SISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMY 82

Query: 204 TRSGRIDLANKIF-DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           ++  +++ A  IF D     +  ++N +I G+   G  +     ++ MR +GV  D  ++
Sbjct: 83  SKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTF 142

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
              + AC     V + KK    +    ++      + +V+   + GLME A    + LP+
Sbjct: 143 PCAIKACLD---VLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPI 199

Query: 323 EPDANIWGALLGACRIYGNVEL 344
             D  +W A++      G  E+
Sbjct: 200 R-DVVLWNAMVNGYAQIGQFEM 220


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 150/419 (35%), Positives = 245/419 (58%), Gaps = 26/419 (6%)

Query: 22   NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81
            +IV+WN +++    +  + + L +++ M      PNS ++T+VL A +   FL  GKE H
Sbjct: 875  DIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETH 934

Query: 82   ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCS 140
              ++R G + D+++  +L DMY K   L  AQ VF N+  R+  ++N L+ GYS      
Sbjct: 935  GYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFE 994

Query: 141  ESLSLFSEMRLLGMKHDVVSFMGAIS------------------------ACANLAAIKQ 176
            ++L L ++M   G+K D+V++ G IS                        ACA+L+ +++
Sbjct: 995  DALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQK 1054

Query: 177  GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            GKEIH ++IR      +FVA +++D Y++S  +  A+K+F  +  K  ASWN +I+G+ +
Sbjct: 1055 GKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAI 1114

Query: 237  LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
             G    AI++F  M++ GVG D +++ A+L+AC + GL+ +G KYFD M  D  + P   
Sbjct: 1115 FGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLE 1174

Query: 296  HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
            HY CMVDLLGRAG +++A  LI  +P++PDA IWGALLG+CRI+ N+     AA++LF L
Sbjct: 1175 HYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKL 1234

Query: 356  KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            +P +   YIL+ N+Y+   +W++   +RELM +   +     SW+Q    V  F  +++
Sbjct: 1235 EPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEK 1293



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 149/302 (49%), Gaps = 2/302 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELK-ALQLVREMPIHNEFPNSVTLTNVLPACA 69
           A+ +F+    +N + WN+ V  F  +   L   L++ +E+       +S   +  L  C 
Sbjct: 626 AAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCT 685

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
           R   +  G EIH  +I++G + D++L  AL + Y +C  L  A  VF+ +   + + +N 
Sbjct: 686 RVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNE 745

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
            I+   Q+    + + LF +M+   +K +  + +  + AC  + A+   K+IHG   R  
Sbjct: 746 AIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFG 805

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L + + + N ++  Y+++G+++LA ++FD +  ++++SWN++I  Y  LG ++ A +LF 
Sbjct: 806 LDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFY 865

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            +    +  D V++  +L+     G  E+       MQ +  KP       ++  +   G
Sbjct: 866 ELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELG 925

Query: 309 LM 310
            +
Sbjct: 926 FL 927



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 124/258 (48%), Gaps = 27/258 (10%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN------- 53
            MY K+     A  +F N+  +NI +WN++V+ ++   +   AL+L+ +M           
Sbjct: 955  MYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVT 1014

Query: 54   -----------------EFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLT 96
                               PNS ++T +L ACA    L+ GKEIH   IR G   D+F+ 
Sbjct: 1015 WNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVA 1074

Query: 97   NALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155
             AL DMY+K   L  A  VF  I  +   S+N +I+G++      E++S+F+EM+ +G+ 
Sbjct: 1075 TALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVG 1134

Query: 156  HDVVSFMGAISACANLAAIKQG-KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANK 214
             D ++F   +SAC N   I +G K    +     +   L     ++D   R+G +D A  
Sbjct: 1135 PDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWD 1194

Query: 215  IFDCLPVK-DSASWNTLI 231
            +   +P+K D+  W  L+
Sbjct: 1195 LIHTMPLKPDATIWGALL 1212


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 154/447 (34%), Positives = 255/447 (57%), Gaps = 34/447 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAKS    EA  +F+++ ++N V+W  +++ F Q     ++++L  +M       +   
Sbjct: 314 LYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFA 373

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  ++  C     L  G+++H+  ++ G    + ++N+L  MYAKC  L  A+ +F  ++
Sbjct: 374 LATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMN 433

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMR---------LLG----------------- 153
            +D VS+  +I  YSQ  + +++   F  M          +LG                 
Sbjct: 434 EKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKV 493

Query: 154 ------MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
                 ++ D V+++     CA+L A K G +I G T++  L     VAN+++  Y++ G
Sbjct: 494 MLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCG 553

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
           RI  A K+FD L VKD  SWN +I GY   G    AI +F+ + + G   D +SY+A+L+
Sbjct: 554 RILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLS 613

Query: 268 ACSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
            CSH GLV++GK YFD M+ A ++ P   H++CMVDLLGRAG + +A  LI ++P++P A
Sbjct: 614 GCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTA 673

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
            +WGALL AC+I+GN EL   AA+H+F L     G Y+L++ +YA+AGK D+++++R+LM
Sbjct: 674 EVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLM 733

Query: 387 KSREAKKNPGCSWVQTRDEVQDFVVND 413
           + +  KKNPG SW++  ++V  F  +D
Sbjct: 734 RDKGIKKNPGYSWMEVDNKVHVFKADD 760



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 160/301 (53%), Gaps = 6/301 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K+     A  LF ++ E+++VSWN MV+  +Q+    +AL +V +M       +S T 
Sbjct: 214 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 273

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T+ L ACAR   LR GK++HA++IR   + D ++ +AL ++YAK GC   A+ VFN +  
Sbjct: 274 TSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHD 333

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ V++ +LI G+ Q    +ES+ LF++MR   M  D  +    IS C +   +  G+++
Sbjct: 334 RNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQL 393

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H + ++      + V+NS++  Y +   +  A  IF  +  KD  SW ++I  Y  +G V
Sbjct: 394 HSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNV 453

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYAC 299
             A   F+ M E  V    +++ A+L A    G  E G + +  M ++  V+P  + Y  
Sbjct: 454 AKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVT 509

Query: 300 M 300
           +
Sbjct: 510 L 510



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 147/301 (48%), Gaps = 33/301 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSVT 60
           YAK  R ++A  LF  +  +++ SWN +++ + Q+R  L +L+    M    + +PN+ T
Sbjct: 81  YAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFT 140

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---- 116
           L   + +C    +     ++ A + +     D  +  AL DM+ +CG ++LA  +F    
Sbjct: 141 LACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIK 200

Query: 117 ----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                       ++  RD VS+N+++   SQ+    E+L +  +
Sbjct: 201 EPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVD 260

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M+  G++ D  ++  +++ACA L++++ GK++H   IR   H   +VA+++++ Y +SG 
Sbjct: 261 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGC 320

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
              A  +F+ L  +++ +W  LI G+   G    ++ LF  MR + +  D  +   +++ 
Sbjct: 321 FKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISG 380

Query: 269 C 269
           C
Sbjct: 381 C 381



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/345 (19%), Positives = 135/345 (39%), Gaps = 66/345 (19%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF--NI 118
             + L +C     L   + +H R++  GL   +FL N L   Y  CG L+ A+ +   +I
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDI 66

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEM--------------------------RLL 152
           +  + +++N+++ GY++    S+++ LF  M                            L
Sbjct: 67  AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFL 126

Query: 153 GMKH------DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
            M        +  +   A+ +C  L       ++  +  +        VA +++D + R 
Sbjct: 127 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRC 186

Query: 207 GRIDLANK-------------------------------IFDCLPVKDSASWNTLILGYG 235
           G +DLA++                               +FD +P +D  SWN ++    
Sbjct: 187 GAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 246

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G V  A+++   M+  GV  D  +Y + LTAC+    +  GK+   ++  +       
Sbjct: 247 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPY 306

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
             + +V+L  ++G  ++A  +  +L  + +   W  L+     YG
Sbjct: 307 VASALVELYAKSGCFKEAKGVFNSLH-DRNNVAWTVLISGFLQYG 350


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 239/416 (57%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +F  +  K+ VSW AM+  +++     +AL   ++M       +   
Sbjct: 85  MYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHV 144

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-- 118
           L + L AC      + G+ +H+ +++ G   D+F+ NALTDMY+K G +  A NVF I  
Sbjct: 145 LCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDS 204

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ VSY  LI GY +T    + LS+F E+R  G++ +  +F   I ACAN AA++QG 
Sbjct: 205 ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGT 264

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++H   ++ +     FV++ ++D Y + G ++ A + FD +      +WN+L+  +G  G
Sbjct: 265 QLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHG 324

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               AI +FE M + GV  + +++I++LT CSH GLVE+G  YF  M +   V P E HY
Sbjct: 325 LGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHY 384

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +C++DLLGRAG +++A + I  +P EP+A  W + LGACRI+G+ E+G  AAE L  L+P
Sbjct: 385 SCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEP 444

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           ++ G  +LLSN+YA   +W++   VR  M+    KK PG SWV    +   F   D
Sbjct: 445 KNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAED 500



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 202/403 (50%), Gaps = 40/403 (9%)

Query: 18  IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPG 77
           + ++N+VSW AM++  +QN    +A++    M I  E P     ++ + ACA    +  G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQT 136
           K++H   ++ G+  +LF+ + L DMY+KCG +  A  VF  +  +DEVS+  +I GYS+ 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
            +  E+L  F +M    +  D       + AC  L A K G+ +H   ++    + +FV 
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 197 NSILDFYTRSGRIDLANKIFDC-LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
           N++ D Y+++G ++ A+ +F      ++  S+  LI GY    +++  +++F  +R  G+
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKY--------FDE---------------------MQ 286
             +  ++ +++ AC++   +E+G +         FDE                     +Q
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQ 300

Query: 287 A-DSV-KPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGN 341
           A D +  PTE+ +  +V + G+ GL +DA+K+ + +    V+P+A  + +LL  C   G 
Sbjct: 301 AFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGL 360

Query: 342 VELGA---WAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381
           VE G    ++ +  + + P    +Y  + ++   AG+  EA +
Sbjct: 361 VEEGLDYFYSMDKTYGVVPGE-EHYSCVIDLLGRAGRLKEAKE 402


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 147/405 (36%), Positives = 236/405 (58%), Gaps = 2/405 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A +LF  I + +IV +N M   +A+    L+A  L  ++     FP+  T  ++L ACA 
Sbjct: 74  AHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACAS 133

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRD-EVSYNIL 129
              L  G+++H   I+ GL+ ++++   L +MY  C  ++ A+ VF+  +    V+YN +
Sbjct: 134 CKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAM 193

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY++ S  +E+LSLF E++   +K   V+ +  +S+CA L A+  GK +H    +   
Sbjct: 194 ITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGF 253

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
           +  + V  +++D Y + G +D A  +F+ + V+D+ +W+ +I+ Y + G    A++LF+ 
Sbjct: 254 NRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKE 313

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAG 308
           MR+ G   D ++++ +L ACSH GLVE+G +YF  M+    V P   HY CMVDLLGRAG
Sbjct: 314 MRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAG 373

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
            +E+A + I  LP+ P   +W  LL AC  +GNVELG    E +F L   H G YI+LSN
Sbjct: 374 RLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSN 433

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + A AG+W++ + VR+LM  R   K PGCS V+  + V +F   D
Sbjct: 434 LCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGD 478



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 145/278 (52%), Gaps = 8/278 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY   +    A  +F  I E  +V++NAM+  +A+     +AL L RE+   N  P  VT
Sbjct: 165 MYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVT 224

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + +VL +CA    L  GK +H  + + G N  + +  AL DMYAKCG L+ A  VF N++
Sbjct: 225 MLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMA 284

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD  +++ +I+ Y+      +++SLF EMR  G + D ++F+G + AC++   +++G E
Sbjct: 285 VRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFE 344

Query: 180 -IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGML 237
             +G+  +  +   +     ++D   R+GR++ A +    LP++ +   W TL+   G  
Sbjct: 345 YFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSH 404

Query: 238 GEVDTAINLFEAMRE--DGVGYDPVSYIAILTACSHGG 273
           G V+    + E + E  D  G D   YI +   C+  G
Sbjct: 405 GNVELGKRVIEQIFELDDSHGGD---YIILSNLCARAG 439


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 145/418 (34%), Positives = 248/418 (59%), Gaps = 5/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+     +A  +   + E+N+VSW AM++ ++QN    +A  L   M      PN  T
Sbjct: 79  MYARCGALEDAHNVLDGMPERNVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFT 138

Query: 61  LTNVLPAC--ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           L +VL +C  ++G      K++HA  I+K     +F+ ++L DMYA+   +  A+ VF+ 
Sbjct: 139 LASVLTSCTGSQGIHQHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDM 198

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  RD VSY  ++ GY++     E+L+LF ++   GM+ + V+F   ++A + L+++  G
Sbjct: 199 LPARDVVSYTTILSGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYG 258

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K++HG+ +R+ L   + + NS++D Y++ G++  + ++FD +P +   SWN +++GYG  
Sbjct: 259 KQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRH 318

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMH 296
           G     + LF  M  D V  D V+ +A+L   SHGGLV++G   FD + +  S      H
Sbjct: 319 GMAYEVVQLFRFM-CDKVKPDSVTLLAVLLGYSHGGLVDEGLDMFDHIVKEQSTLLNTQH 377

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y C++DLLGR+G +E A+ LI+ +P +P   IWG+LLGACR++ NV +G + A+ LF ++
Sbjct: 378 YGCVIDLLGRSGQLEKALLLIQKMPFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIE 437

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P++ G Y++LSN+YA A  W +  ++R+LM  +   K PG SW+     +  F  ++R
Sbjct: 438 PENAGNYVILSNIYAAARMWKDVFRLRKLMLKKTVIKEPGRSWMILDKVIHTFHSSER 495



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 139/272 (51%), Gaps = 4/272 (1%)

Query: 65  LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDE 123
           +  C     LR G+++HAR++  G    L+L   L  MYA+CG L  A NV + +  R+ 
Sbjct: 42  ITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPERNV 101

Query: 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG--KEIH 181
           VS+  +I GYSQ    +E+  LF  M   G + +  +    +++C     I Q   K++H
Sbjct: 102 VSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQVH 161

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
              I+K+   H+FV +S+LD Y RS  I  A ++FD LP +D  S+ T++ GY  LG  +
Sbjct: 162 AFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRLGLDE 221

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            A+NLF  +  +G+  + V++  +L A S    ++ GK+    +    +         ++
Sbjct: 222 EALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLI 281

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           D+  + G +  + ++  N+P E     W A+L
Sbjct: 282 DMYSKCGKLLYSRRVFDNMP-ERSVVSWNAML 312



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 86/180 (47%), Gaps = 6/180 (3%)

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
            AI+ C    A+++G+++H   +       L++A  ++  Y R G ++ A+ + D +P +
Sbjct: 40  AAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPER 99

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282
           +  SW  +I GY        A +LF  M   G   +  +  ++LT+C+    + + +   
Sbjct: 100 NVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQ--I 157

Query: 283 DEMQADSVKPT-EMHY---ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
            ++ A ++K   E+H    + ++D+  R+  +++A ++   LP     +    L G  R+
Sbjct: 158 KQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRL 217


>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 581

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 237/418 (56%), Gaps = 5/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY+  S P+ A  +  +  +   + VSWN ++A +    L  KALQ   +M       + 
Sbjct: 137 MYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDD 196

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           VTL N L ACAR   ++ GK  HA ++  G   + ++ ++L  MYAKCG +  A+ +F+ 
Sbjct: 197 VTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDG 256

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  R+ V +  +I GY+Q     E++ LF +M++ G+K D  +    +S+C  + A+  G
Sbjct: 257 MPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLG 316

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + +H       L   + V NS++D Y++ G I  A  IF  +  +D+ SW  +I+G+   
Sbjct: 317 RYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAAN 376

Query: 238 GEVDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
           G    A++LF  M E+G V  + ++++ +LT+CSHGGLVE+G ++F  M +   + P   
Sbjct: 377 GLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIE 436

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY CMVDLLGRA L+ +A + IK +P+ PDA +W +LL ACR  G V L  + AE + +L
Sbjct: 437 HYGCMVDLLGRAKLLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVL 496

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +P  CG  +LLS +YA   +W +A+KVR  + S    K PGCS+++    V +F   D
Sbjct: 497 EPNKCGGDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVDGCVHEFFAGD 554



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 125/234 (53%), Gaps = 8/234 (3%)

Query: 49  MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
           MPI N      +L+  L   AR   +  G ++HA  ++ GL+ D F+ N L +MY+ C  
Sbjct: 89  MPIDN-----YSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSY 143

Query: 109 LNLAQNVFNISFR---DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI 165
            + A++V + + +   D VS+N +I GY      +++L  FS+M    +  D V+ + A+
Sbjct: 144 PSTARSVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNAL 203

Query: 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
            ACA    +K GK  H + +      + ++ +S++  Y + G+++ A +IFD +P +++ 
Sbjct: 204 VACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAV 263

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
            W ++I GY  LG+   AI LF  M+  GV  D  +   ++++C   G ++ G+
Sbjct: 264 CWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGR 317


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 154/451 (34%), Positives = 254/451 (56%), Gaps = 39/451 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +Y +S +   A+  F  + +++IVSWN+M++ ++Q    L+AL +  +M       P++ 
Sbjct: 217 LYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNF 276

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ------ 113
           TL ++L ACA    L  GK+IHA I+R        + NAL  MYAK G + +A+      
Sbjct: 277 TLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHN 336

Query: 114 ---------------------------NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSL 145
                                       +FN +  RD V++  +IVGY Q    +++L L
Sbjct: 337 RTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALEL 396

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           F  M   G + +  +    +S  ++L  ++ GK+IH   I+    +   V N+++  Y +
Sbjct: 397 FRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAK 456

Query: 206 SGRIDLANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
           +G I++A ++FD LP   K+  SW ++I+     G    AINLFE M   G+  D ++Y+
Sbjct: 457 TGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYV 515

Query: 264 AILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
            +L+AC+H GLVE+G+KY++ M +   ++PT  HYACM+DL GRAGL+++A   I+++P+
Sbjct: 516 GVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPI 575

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382
           EPD   WG+LL +C+I+ N +L   AAE L ++ P + G Y+ L+N+Y+  GKW+ A++ 
Sbjct: 576 EPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQT 635

Query: 383 RELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           R+LMK R  +K  G SW+  ++EV  F V D
Sbjct: 636 RKLMKDRGVRKEKGISWIHIKNEVHAFGVED 666



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 203/488 (41%), Gaps = 117/488 (23%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      +  L + + + + VSW A++  + Q  L   A+ +  +M      P+  T+
Sbjct: 86  YAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTV 145

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----- 116
           +NVL +CA    L  G++IH+ +++ GL   + +  +L +MYAKCG   +A+ VF     
Sbjct: 146 SNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTV 205

Query: 117 -NISF--------------------------RDEVSYNILIVGYSQTSDCSESLSLFSEM 149
            NIS                           RD VS+N +I GYSQ     E+L +FS+M
Sbjct: 206 KNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKM 265

Query: 150 -RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN----------- 197
                +K D  +    +SACANL  +  GK+IH   +R    T   V N           
Sbjct: 266 LNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGG 325

Query: 198 ----------------------SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
                                 S+LD YT+ G +  A +IF+ L  +D  +W  +I+GY 
Sbjct: 326 VEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYV 385

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE- 294
             G  + A+ LF  M  +G   +  +  A+L+  S   ++E GK    ++ A ++K  E 
Sbjct: 386 QNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGK----QIHASAIKAGES 441

Query: 295 -----------------------------------MHYACMVDLLGRAGLMEDAVKLIK- 318
                                              + +  M+  L + GL ++A+ L + 
Sbjct: 442 STPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFER 501

Query: 319 --NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-----CGYYILLSNMYA 371
             ++ ++PD   +  +L AC   G VE G    ++  M+   H       +Y  + ++Y 
Sbjct: 502 MLSVGMKPDHITYVGVLSACTHVGLVEQG---RKYYNMMTEVHEIEPTLSHYACMIDLYG 558

Query: 372 EAGKWDEA 379
            AG   EA
Sbjct: 559 RAGLLQEA 566



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 147/339 (43%), Gaps = 40/339 (11%)

Query: 49  MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
           M + N   +S    ++L    R      G+ +H +II+KGL+  ++L N L   YAK G 
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 109 LNLAQNVFN------------------------ISFR--------DEVSYNILIVGYSQT 136
           L  A +VF+                        +S R        D VS+  +IVGY+Q 
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQF 120

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
                ++ +F++M    +     +    +S+CA    +  G++IH   ++  L + + VA
Sbjct: 121 GLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVA 180

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
            S+L+ Y + G   +A  +FD + VK+ ++WN LI  Y   G+ + A + FE M +    
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDR--- 237

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDL---LGRAGLMED 312
            D VS+ ++++  S  G   +    F +M  + S+KP     A ++     L +  + + 
Sbjct: 238 -DIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQ 296

Query: 313 AVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
               I     E    +  AL+      G VE+     EH
Sbjct: 297 IHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEH 335


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 239/416 (57%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +F  +  K+ VSW AM+  +++     +AL   ++M       +   
Sbjct: 150 MYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHV 209

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-- 118
           L + L AC      + G+ +H+ +++ G   D+F+ NALTDMY+K G +  A NVF I  
Sbjct: 210 LCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDS 269

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ VSY  LI GY +T    + LS+F E+R  G++ +  +F   I ACAN AA++QG 
Sbjct: 270 ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGT 329

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++H   ++ +     FV++ ++D Y + G ++ A + FD +      +WN+L+  +G  G
Sbjct: 330 QLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHG 389

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               AI +FE M + GV  + +++I++LT CSH GLVE+G  YF  M +   V P E HY
Sbjct: 390 LGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHY 449

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +C++DLLGRAG +++A + I  +P EP+A  W + LGACRI+G+ E+G  AAE L  L+P
Sbjct: 450 SCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEP 509

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           ++ G  +LLSN+YA   +W++   VR  M+    KK PG SWV    +   F   D
Sbjct: 510 KNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAED 565



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 211/423 (49%), Gaps = 46/423 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  LF  + ++N+VSW AM++  +QN    +A++    M I  E P    
Sbjct: 49  MYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFA 108

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            ++ + ACA    +  GK++H   ++ G+  +LF+ + L DMY+KCG +  A  VF  + 
Sbjct: 109 FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP 168

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +DEVS+  +I GYS+  +  E+L  F +M    +  D       + AC  L A K G+ 
Sbjct: 169 CKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRS 228

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF----DCLPVKDSASWNTLILGYG 235
           +H   ++    + +FV N++ D Y+++G ++ A+ +F    +C   ++  S+  LI GY 
Sbjct: 229 VHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSEC---RNVVSYTCLIDGYV 285

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY--------FDE--- 284
              +++  +++F  +R  G+  +  ++ +++ AC++   +E+G +         FDE   
Sbjct: 286 ETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPF 345

Query: 285 ------------------MQA-DSV-KPTEMHYACMVDLLGRAGLMEDAVKLIKNL---P 321
                             +QA D +  PTE+ +  +V + G+ GL +DA+K+ + +    
Sbjct: 346 VSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRG 405

Query: 322 VEPDANIWGALLGACRIYGNVELGA---WAAEHLFMLKPQHCGYYILLSNMYAEAGKWDE 378
           V+P+A  + +LL  C   G VE G    ++ +  + + P    +Y  + ++   AG+  E
Sbjct: 406 VKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGE-EHYSCVIDLLGRAGRLKE 464

Query: 379 ASK 381
           A +
Sbjct: 465 AKE 467



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 143/258 (55%), Gaps = 9/258 (3%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+   A+   LR GK++HA +I  G     FLTN L +MY+KCG L+ A  +F+ + 
Sbjct: 8   LAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMP 67

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+  +I G SQ S  SE++  F  MR+ G      +F  AI ACA+L +I+ GK+
Sbjct: 68  QRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQ 127

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + ++  + + LFV +++ D Y++ G +  A K+F+ +P KD  SW  +I GY  +GE
Sbjct: 128 MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGE 187

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK---PTEMH 296
            + A+  F+ M ++ V  D     + L AC  G L  K  K+   + +  VK    +++ 
Sbjct: 188 FEEALLAFKKMIDEEVTIDQHVLCSTLGAC--GAL--KACKFGRSVHSSVVKLGFESDIF 243

Query: 297 YA-CMVDLLGRAGLMEDA 313
               + D+  +AG ME A
Sbjct: 244 VGNALTDMYSKAGDMESA 261



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 9/194 (4%)

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
           M  D  +    I   A    +++GK++H + I        F+ N +++ Y++ G +D A 
Sbjct: 1   MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHAL 60

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
           K+FD +P ++  SW  +I G     +   AI  F  MR  G      ++ + + AC+  G
Sbjct: 61  KLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLG 120

Query: 274 LVEKGKKYFDEMQADSVK---PTEMHYAC-MVDLLGRAGLMEDAVKLIKNLPVEPDANIW 329
            +E GK    +M   ++K    +E+     + D+  + G M DA K+ + +P + + + W
Sbjct: 121 SIEMGK----QMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVS-W 175

Query: 330 GALLGACRIYGNVE 343
            A++      G  E
Sbjct: 176 TAMIDGYSKIGEFE 189


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 149/416 (35%), Positives = 245/416 (58%), Gaps = 6/416 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     +A  +F  ++  ++VSW AM+  +AQ     +AL+L  +    +  PN+VT
Sbjct: 282 LYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVT 341

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            ++VL ACA+   L  G+ +H   I+ G + D    NAL DMYAKC  +  A+ VF   F
Sbjct: 342 TSSVLSACAQTGSLNMGRSVHCLGIKLG-SEDATFENALVDMYAKCHMIGDARYVFETVF 400

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +++N +I GY+Q     E+L LF +MR   +  D ++ +  +SACA++ A + G  
Sbjct: 401 DKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSS 460

Query: 180 IHGVTIRKHLHT-HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +HG  I+  L +  ++V  ++L+FY + G  + A  IFD +  K++ +W+ +I GYG+ G
Sbjct: 461 LHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQG 520

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
           +   ++ LF  M ++ +  + V +  IL+ACSH G++ +G +YF+ M Q  +  P+  HY
Sbjct: 521 DCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHY 580

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACMVDLL RAG +E+A+  I+ +P++PD ++ GA L  CR++   +LG  A   +  L P
Sbjct: 581 ACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHP 640

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV--QTRDEVQDFVV 411
               YY+L+SN+YA  G+W +A++V ELMK R   K PG S V  +T ++    +V
Sbjct: 641 DKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVDIETSNDFSPLIV 696



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 172/343 (50%), Gaps = 4/343 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     ++  +F  I ++N+V W +M+  + QN    + L L   M       N  T
Sbjct: 181 MYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYT 240

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +++ AC +   L  GK +H  +I+ G + + FL   L D+Y KCG +  A +VF+ +S
Sbjct: 241 LGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELS 300

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VS+  +IVGY+Q     E+L LF++ R   +  + V+    +SACA   ++  G+ 
Sbjct: 301 TIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRS 360

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + I+       F  N+++D Y +   I  A  +F+ +  KD  +WN++I GY   G 
Sbjct: 361 VHCLGIKLGSEDATF-ENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGY 419

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD-EMQADSVKPTEMHYA 298
              A+ LF+ MR D V  D ++ +++L+AC+  G    G       ++A  +  +     
Sbjct: 420 AYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGT 479

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
            +++   + G  E A ++I +   E +   W A++G   I G+
Sbjct: 480 ALLNFYAKCGDAESA-RVIFDEMGEKNTITWSAMIGGYGIQGD 521



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 135/272 (49%), Gaps = 5/272 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL--VREMPIHNEFPNSVTLTNVLPAC 68
           A  +F  I   ++ SW  M+  +  N    + +Q    R     NE+ N V  + VL AC
Sbjct: 90  ARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDN-VVFSIVLKAC 148

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
           +       G+++H +I++ G + D F+   L DMYAKC  +  ++ VF+ I  R+ V + 
Sbjct: 149 SELRETDEGRKLHCQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWT 207

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            +IVGY Q     E L LF+ MR   ++ +  +    ++AC  L A+ QGK +HG  I+ 
Sbjct: 208 SMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKS 267

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
               + F+   +LD Y + G I  A  +FD L   D  SW  +I+GY   G    A+ LF
Sbjct: 268 GFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLF 327

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
              R   +  + V+  ++L+AC+  G +  G+
Sbjct: 328 TDERWKDLLPNTVTTSSVLSACAQTGSLNMGR 359



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 118/258 (45%), Gaps = 4/258 (1%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           ++IHA ++  GL+ DL     L  +Y   G +  A+ +F+ I   D  S+ ++I  Y   
Sbjct: 56  RKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLN 115

Query: 137 SDCSESLSLF-SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
              SE +  + + +R    ++D V F   + AC+ L    +G+++H   I K      FV
Sbjct: 116 DSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLH-CQIVKVGSPDSFV 174

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
              ++D Y +   ++ + ++FD +  ++   W ++I+GY     +   + LF  MRE  V
Sbjct: 175 LTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLV 234

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
             +  +  +++TAC+  G + +GK     +              ++DL  + G + DA  
Sbjct: 235 EGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFS 294

Query: 316 LIKNLPVEPDANIWGALL 333
           +   L    D   W A++
Sbjct: 295 VFDELST-IDLVSWTAMI 311


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 245/451 (54%), Gaps = 38/451 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQ----------------NRLELK--- 41
           MY K  +   A  LF  I E++ VSWN+M++ +A                   +EL    
Sbjct: 319 MYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIII 378

Query: 42  ----------------ALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
                           AL+L+ +M       +SV L   L AC+     + GKEIH+  I
Sbjct: 379 WNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAI 438

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSESLS 144
           R        + N+L  MY++C  L  A  +F +   +  +S+N +I G        E+  
Sbjct: 439 RSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASF 498

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG-VTIRKHLHTHLFVANSILDFY 203
           L  EM L G++ + V+    +  CA +A ++ GKE H  +T R+    HL + N+++D Y
Sbjct: 499 LLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMY 558

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
            RSG++  A ++FD L  +D  ++ ++I GYGM GE   A+ LFE M    +  D ++ I
Sbjct: 559 ARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMI 618

Query: 264 AILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
           A+L+ACSH GLV +G+  F++M++   + P   H+ACM DL GRAGL+  A ++I+N+P 
Sbjct: 619 AVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPY 678

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382
           +P   +W  L+GACRI+ N E+G WAAE L  +KP++ GYY+L++NMYA AG W++ +KV
Sbjct: 679 KPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKV 738

Query: 383 RELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           R  M+    +K PGC+WV        F+V+D
Sbjct: 739 RXFMRDLGVRKAPGCAWVDVGTGFSPFLVDD 769



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 190/445 (42%), Gaps = 78/445 (17%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           WN +++++ +N    KAL   ++M      P++ T  +VL AC     L  GKE+H  I 
Sbjct: 243 WNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESIN 302

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV------------- 131
              + + L + NAL  MY KCG + +A+++F+ I  RD VS+N +I              
Sbjct: 303 ASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFE 362

Query: 132 ----------------------GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA 169
                                 GY +T +   +L L S+MR  G   D V+ +  + AC+
Sbjct: 363 LFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACS 422

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
           ++   K GKEIH   IR        V NS++  Y+R   +  A  +F  +  K   SWN+
Sbjct: 423 HIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNS 482

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY-------- 281
           +I G   +   + A  L   M   G+  + V+  ++L  C+    ++ GK++        
Sbjct: 483 IISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRRE 542

Query: 282 -----------FDEMQADSVKPTE-------------MHYACMVDLLGRAGLMEDAVKLI 317
                        +M A S K  E             M Y  M+   G  G  + A+KL 
Sbjct: 543 DFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLF 602

Query: 318 K---NLPVEPDANIWGALLGACRIYGNVELGAWAAEH---LFMLKPQHCGYYILLSNMYA 371
           +   N  ++PD     A+L AC   G V  G    E    L+ L P H  ++  +++++ 
Sbjct: 603 EEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTP-HLEHFACMTDLFG 661

Query: 372 EAGKWDEASKVRELMKSREAKKNPG 396
            AG  ++A   +E++++   K  P 
Sbjct: 662 RAGLLNKA---KEIIRNMPYKPTPA 683



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 168/406 (41%), Gaps = 80/406 (19%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           ++++L +C     L  G+++H  II  G      L   L   Y+    L  A  +  N +
Sbjct: 177 ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSN 236

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
                 +N+LI  Y +   C ++LS + +M   G++ D  ++   + AC     +  GKE
Sbjct: 237 ILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKE 296

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H       +   L V N+++  Y + G++ +A  +FD +P +D+ SWN++I  Y  +G 
Sbjct: 297 VHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGM 356

Query: 240 VDTAINLF-----------------------------------EAMREDGVGYDPVSYIA 264
            + A  LF                                     MR+ G   D V+ I 
Sbjct: 357 WNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALII 416

Query: 265 ILTACSHGGLVEKGKKY--------FDEMQADSVKPT--EMHYAC--------MVDLLGR 306
            L ACSH G  + GK+         F E+  D+VK +   M+  C        +  L+  
Sbjct: 417 GLGACSHIGDAKLGKEIHSFAIRSCFGEV--DTVKNSLITMYSRCKDLKHAYLLFQLMEA 474

Query: 307 AGLM---------------EDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWA 348
             L+               E+A  L++ +    +EP+     ++L  C    N++ G   
Sbjct: 475 KSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHG--K 532

Query: 349 AEHLFMLKPQHCGYYILLSN----MYAEAGKWDEASKVRELMKSRE 390
             H +M + +    ++LL N    MYA +GK  EA +V +++  R+
Sbjct: 533 EFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERD 578


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 147/426 (34%), Positives = 239/426 (56%), Gaps = 6/426 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN--EFPNS 58
           MY+K  R  EA  +F  I +++++SWNAM+A F       KAL     M   N  E P+ 
Sbjct: 522 MYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDE 581

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVF 116
            TLT++L AC+    +  GK+IH  ++R G +      +T +L D+Y KCG L  A+  F
Sbjct: 582 FTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAF 641

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           + I  +  +S++ LI+GY+Q  +  E++ LF  ++ L  + D  +    I   A+ A ++
Sbjct: 642 DQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLR 701

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           QGK++  + ++        V NS++D Y + G +D A K F  + +KD  SW  +I GYG
Sbjct: 702 QGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYG 761

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTE 294
             G    ++ +F  M    +  D V Y+A+L+ACSH G++++G++ F ++ +   +KP  
Sbjct: 762 KHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRV 821

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYAC+VDLLGRAG +++A  LI  +P++P+  IW  LL  CR++G++ELG    + L  
Sbjct: 822 EHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLR 881

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +  ++   Y+++SN+Y +AG W+E    REL   +  KK  G SWV+   EV  F   + 
Sbjct: 882 IDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGED 941

Query: 415 MKTFTP 420
               TP
Sbjct: 942 SHPLTP 947



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 206/446 (46%), Gaps = 62/446 (13%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K   P  A  +F ++ E+N+VSW+A+++    N     +L L  EM     +PN  T
Sbjct: 421 MYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFT 480

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            +  L AC   + L  G +IH   ++ G    + + N+L DMY+KCG +N A+ VF  I 
Sbjct: 481 FSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIV 540

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH--DVVSFMGAISACANLAAIKQG 177
            R  +S+N +I G+      S++L  F  M+   +K   D  +    + AC++   I  G
Sbjct: 541 DRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAG 600

Query: 178 KEIHGVTIRKHLH--THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           K+IHG  +R   H  +   +  S++D Y + G +  A K FD +  K   SW++LILGY 
Sbjct: 601 KQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYA 660

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK-PTE 294
             GE   A+ LF+ ++E     D  +  +I+   +   L+ +GK    +MQA +VK P+ 
Sbjct: 661 QEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGK----QMQALAVKLPSG 716

Query: 295 MHYACM---VDLLGRAGLMEDAVKLIKNLP------------------------------ 321
           +  + +   VD+  + GL+++A K    +                               
Sbjct: 717 LETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEM 776

Query: 322 ----VEPDANIWGALLGACRIYGNVELGAWAAEHLFM-------LKPQHCGYYILLSNMY 370
               +EPD   + A+L AC   G ++ G    E LF        +KP+   +Y  + ++ 
Sbjct: 777 LRHNIEPDEVCYLAVLSACSHSGMIKEG----EELFSKLLETHGIKPR-VEHYACVVDLL 831

Query: 371 AEAGKWDEASKVRELMKSREAKKNPG 396
             AG+  EA   + L+ +   K N G
Sbjct: 832 GRAGRLKEA---KHLIDTMPIKPNVG 854



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 105/193 (54%), Gaps = 3/193 (1%)

Query: 91  FDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
            +L  +N L DMY KC    +A  VF+ +  R+ VS++ L+ G+    D   SLSLFSEM
Sbjct: 410 LNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEM 469

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
              G+  +  +F   + AC  L A+++G +IHG  ++      + V NS++D Y++ GRI
Sbjct: 470 GRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRI 529

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY--IAILT 267
           + A K+F  +  +   SWN +I G+   G    A++ F  M+E  +   P  +   ++L 
Sbjct: 530 NEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLK 589

Query: 268 ACSHGGLVEKGKK 280
           ACS  G++  GK+
Sbjct: 590 ACSSTGMIYAGKQ 602


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 146/414 (35%), Positives = 239/414 (57%), Gaps = 10/414 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++ R  EA  LF  + ++N+VSW AM++ +AQN   + A +L   MP  NE   +  L
Sbjct: 184 YCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAML 243

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
              + A   GH      E    +     +  +   NA+   + + G ++ A+ +F  +  
Sbjct: 244 VGYIQA---GHV-----EDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCA 295

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD+ +++ +I  Y Q     E+LS F EM   G++ +  SF+  ++ CA LA    G+E+
Sbjct: 296 RDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGREL 355

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   +R    T +F  ++++  Y + G +D A ++F+    KD   WN++I GY   G  
Sbjct: 356 HAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLG 415

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYAC 299
           + A+ +F+ +R   +  D ++YI +LTACS+ G V++G++ F+ M  +S ++    HY+C
Sbjct: 416 EEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSC 475

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGRAGL+++A+ LI N+PVEPDA IWGAL+GACR++ N E+   AA+ L  L+P  
Sbjct: 476 MVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPGS 535

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            G Y+LLS++Y   G+W++AS +R+ + SR   K+PGCSW++    V  F   D
Sbjct: 536 AGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGD 589



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/401 (21%), Positives = 169/401 (42%), Gaps = 72/401 (17%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLEL-KALQLVREMPIHNEFPNSVT 60
           Y ++  P  A  LFH +  +++ S+NA++A  +  R  L  A   +  +P+    P+ V+
Sbjct: 58  YFRNHLPDAALGLFHRMPSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLP---PSVVS 114

Query: 61  LTNVLPACARGHFLRPG-KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
            T++L    R   L    +  H    R  + + + L   L       G +N A+ +F+ +
Sbjct: 115 FTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFL-----DAGRVNEARKLFDEM 169

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D V+   ++ GY Q    +E+ +LF EM     K +VVS+   IS            
Sbjct: 170 PDKDVVARTAMLSGYCQAGRITEARALFDEMP----KRNVVSWTAMISG----------- 214

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
                                   Y ++G++ LA K+F+ +P ++  SW  +++GY   G
Sbjct: 215 ------------------------YAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAG 250

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
            V+ A +LF AM +  V     +  A++      G+V+  K  F+ M A      +  ++
Sbjct: 251 HVEDAEDLFNAMPDHPVA----ACNAMMVGFGQHGMVDAAKAMFERMCARD----DGTWS 302

Query: 299 CMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
            M+ +  +   + +A+   + +    + P+   + ++L  C      + G     H  ML
Sbjct: 303 AMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYG--RELHAAML 360

Query: 356 KPQHCGY------YILLSNMYAEAGKWDEASKVRELMKSRE 390
           +   C +         L  MY + G  D+A +V  + + ++
Sbjct: 361 R---CSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKD 398



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 20/202 (9%)

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +  AN+ + +  R+G I+ A   FD +P++ +AS+N LI GY      D A+ LF  M  
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS---VKPTEMHYACMVDLLGRAGL 309
             +G    SY A++      GL  +     D   A +   + P+ + +  ++    R GL
Sbjct: 77  RDLG----SYNALI-----AGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGL 127

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH--CGYYILLS 367
           + DA++L   +P E +   +  LLG     G V      A  LF   P         +LS
Sbjct: 128 LADAIRLFHQMP-ERNHVTYTVLLGGFLDAGRVN----EARKLFDEMPDKDVVARTAMLS 182

Query: 368 NMYAEAGKWDEASKVRELMKSR 389
             Y +AG+  EA  + + M  R
Sbjct: 183 G-YCQAGRITEARALFDEMPKR 203



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F+    K++V WN+M+  +AQ+ L  +AL +  ++ +    P+ +T
Sbjct: 377 MYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGIT 436

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNA----LTDMYAKCGCLNLAQNVF 116
              VL AC+    ++ G+EI   +   G+N  + L  A    + D+  + G ++ A ++ 
Sbjct: 437 YIGVLTACSYTGKVKEGREIFNSM---GMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLI 493

Query: 117 N 117
           N
Sbjct: 494 N 494


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 154/441 (34%), Positives = 238/441 (53%), Gaps = 35/441 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA +    ++   F  + ++N+VSWN+M+  +AQ     +A  L   M       +  TL
Sbjct: 155 YASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTL 214

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
            ++L AC+    L  GK +H+ ++ +G   DL L NAL DMY KCG L +A   F++  F
Sbjct: 215 VSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPF 274

Query: 121 RDEVSY-------------------------------NILIVGYSQTSDCSESLSLFSEM 149
           ++ VS+                               N +I  Y Q     E+L L++ M
Sbjct: 275 KNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRM 334

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT-HLFVANSILDFYTRSGR 208
           +LLG+  D  +    +SAC  L  +  GK IH   IR + H   + + NS+LD Y R G+
Sbjct: 335 KLLGLAPDEFTLAAVLSACGQLGDLASGKMIHD-CIRDNFHNPGVALFNSLLDMYARCGQ 393

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +D A  +F  +P K+  SWN +I    M G    A+  F +M  D    D ++++A+L+A
Sbjct: 394 VDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSA 453

Query: 269 CSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           C+HGGL+E G+ YF  M+   +VKP   HYACMVDLLGR G +  AV LIK++P+ PD  
Sbjct: 454 CNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVV 513

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           +WGALLGACRI+G++++G    + L  L+    G ++L+SNM  E  +W++  ++R+LM+
Sbjct: 514 VWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMR 573

Query: 388 SREAKKNPGCSWVQTRDEVQD 408
               KKN G S ++T   + +
Sbjct: 574 EWGMKKNMGVSSIETNSNIHE 594



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 167/365 (45%), Gaps = 33/365 (9%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  I + +   +N+++  +  +    +AL L+R M      PN  TL  +L ACAR
Sbjct: 63  ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
                     H  +++ G    +F+ NAL   YA  G L  ++  F+ +  R+ VS+N +
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 182

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY+Q  +  E+ SLF  MR  G+  D  + +  + AC+    ++ GK +H   + +  
Sbjct: 183 INGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGC 242

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
              L +AN+++D Y + G + +A+  FD +P K++ SW +++        +D A + FE 
Sbjct: 243 RIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQ 302

Query: 250 MRED-------------------------------GVGYDPVSYIAILTACSHGGLVEKG 278
           + E                                G+  D  +  A+L+AC   G +  G
Sbjct: 303 IPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASG 362

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
           K   D ++ +   P    +  ++D+  R G ++ A+ L   +P + +   W A++GA  +
Sbjct: 363 KMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSK-NVISWNAIIGALAM 421

Query: 339 YGNVE 343
           +G  +
Sbjct: 422 HGRAQ 426



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 149/330 (45%), Gaps = 18/330 (5%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC---GCLNLAQNVFN-IS 119
           +L  C   H L    ++HA ++  G++    +T+ +   Y      G +  A+ +F+ I 
Sbjct: 18  LLRRCGSVHRL---NQLHAHLVVHGVDD---VTSQILASYCALPAGGGVWYARQLFDRIP 71

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D   YN LI  Y  +    E+L L   M   G+  +  +    + ACA + A +    
Sbjct: 72  DPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMV 131

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            HGV ++      +FV N++L  Y  +G +  + + FD +  ++  SWN++I GY   G 
Sbjct: 132 THGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGN 191

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A +LFE MR  G+  D  + +++L ACS  G +E GK     +     +   +    
Sbjct: 192 TREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANA 251

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VD+ G+ G +  A      +P + +A  W ++L A     +++    AA   F   P+ 
Sbjct: 252 LVDMYGKCGDLLMAHTCFDMMPFK-NAVSWTSMLCALAKRASID----AARDWFEQIPEK 306

Query: 360 C--GYYILLSNMYAEAGKWDEASKVRELMK 387
               +  ++S  Y + G++ EA  +   MK
Sbjct: 307 SIISWNAMIS-CYVQGGRFHEALDLYNRMK 335



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 37/78 (47%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+  +   A  LF  +  KN++SWNA++   A +     AL   R M      P+ +T
Sbjct: 387 MYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEIT 446

Query: 61  LTNVLPACARGHFLRPGK 78
              +L AC  G  L  G+
Sbjct: 447 FVALLSACNHGGLLEAGQ 464


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 232/416 (55%), Gaps = 30/416 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K    + A  +   +   + VSWN+M+    +  L  +AL L R M + +   +  T
Sbjct: 284 MYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFT 343

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +VL   +    +R    +H+ I++ G      + NAL DMYAK G  + A +VF  ++
Sbjct: 344 YPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMT 403

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+  L+ G        E+L LF EMR++G+  D +     +SACA L  ++ GK+
Sbjct: 404 DKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQ 463

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++  L + L V NS++  Y + G I+ ANK+FD + ++D  +W  LI+GY     
Sbjct: 464 VHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYA---- 519

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYA 298
                       ++G G D            H GLVE G+ YF  M+    +KP   HYA
Sbjct: 520 ------------QNGRGRD------------HAGLVEHGRSYFQSMEEVYGIKPGPEHYA 555

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLGR+G + +A +L+  + V+PDA +W ALL ACR++GNVELG  AA +LF L+P+
Sbjct: 556 CMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPK 615

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +   Y+LLSN+Y+ AGKW+EA+K R LMK R   K PGCSW++   +V  F+  DR
Sbjct: 616 NAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDR 671



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 212/429 (49%), Gaps = 43/429 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA S R  EA  LF+    ++ ++W+++++ + +   +++AL+L  EM    E PN  T 
Sbjct: 82  YANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTW 141

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-- 119
            +VL  C+    L  GK+IHA  I+   + + F+   L DMYAKC C+  A+ +F ++  
Sbjct: 142 GSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPD 201

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ V +  ++ GYSQ  D  +++  F +MR  G++ +  +F   ++AC +++A   G +
Sbjct: 202 KRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQ 261

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  +R     ++FV ++++D Y++ G +  A ++ + + V D  SWN++I+G    G 
Sbjct: 262 VHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGL 321

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG---------- 278
            + A++LF  M    +  D  +Y ++L   S           H  +V+ G          
Sbjct: 322 GEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNA 381

Query: 279 -------KKYFDEMQADSVKPTE---MHYACMVDLLGRAGLMEDAVKL---IKNLPVEPD 325
                  + YFD       K T+   + +  +V      G  E+A++L   ++ + + PD
Sbjct: 382 LVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPD 441

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN----MYAEAGKWDEASK 381
             +  A+L AC     +E G     H   LK    G  + + N    MYA+ G  ++A+K
Sbjct: 442 QIVIAAVLSACAELTVLEFGKQV--HANFLKSG-LGSSLSVDNSLVSMYAKCGCIEDANK 498

Query: 382 VRELMKSRE 390
           V + M+ ++
Sbjct: 499 VFDSMEIQD 507



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/398 (28%), Positives = 195/398 (48%), Gaps = 14/398 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MYAK     EA YLF    +K N V W AMV  ++QN    KA++  R+M       N  
Sbjct: 182 MYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQF 241

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T  ++L AC        G ++H  I+R G   ++F+ +AL DMY+KCG L+ A+ +   +
Sbjct: 242 TFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETM 301

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              D VS+N +IVG  +     E+LSLF  M L  MK D  ++   ++  + +  ++   
Sbjct: 302 EVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAM 361

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H + ++     +  V N+++D Y + G  D A  +F+ +  KD  SW +L+ G    G
Sbjct: 362 SVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNG 421

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             + A+ LF  MR  G+  D +   A+L+AC+   ++E GK+         +  +     
Sbjct: 422 SYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDN 481

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL------GACRIY-GNVELGA---WA 348
            +V +  + G +EDA K+  ++ ++ D   W AL+      G  R + G VE G     +
Sbjct: 482 SLVSMYAKCGCIEDANKVFDSMEIQ-DVITWTALIVGYAQNGRGRDHAGLVEHGRSYFQS 540

Query: 349 AEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
            E ++ +KP    +Y  + ++   +GK  EA ++   M
Sbjct: 541 MEEVYGIKPGP-EHYACMIDLLGRSGKLMEAKELLNQM 577



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 67/137 (48%)

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N+++  Y  SGR++ A K+F   P++   +W++LI GY   G    A+ LF  M+ +G  
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            +  ++ ++L  CS   L+EKGK+                   +VD+  +   + +A  L
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 317 IKNLPVEPDANIWGALL 333
            +  P + +  +W A++
Sbjct: 196 FELAPDKRNHVLWTAMV 212



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF-EAMREDG 254
           +N +L   ++ GR+D A K+FD +P +D  SWNT+I  Y   G ++ A  LF E      
Sbjct: 44  SNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSC 103

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
           + +  +    I   C +G  VE   + F EMQ +  +P +  +  ++ +     L+E   
Sbjct: 104 ITWSSL----ISGYCRYGCDVE-ALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGK 158

Query: 315 KLIKN-LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ++  + +  + D+N +  + G   +Y   +     AE+LF L P
Sbjct: 159 QIHAHAIKTQFDSNAF-VVTGLVDMYAKCKC-ILEAEYLFELAP 200


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  280 bits (716), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 140/418 (33%), Positives = 244/418 (58%), Gaps = 5/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MY++  R A A  +F  I  +++VSWN+M+A +A+     +A+++  EM   + F P+ +
Sbjct: 160 MYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEM 219

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           +L +VL AC     L  G+ +   ++ +G+  + ++ +AL  MYAKCG L  A+ +F+ +
Sbjct: 220 SLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGM 279

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + RD +++N +I GY+Q     E++SLF  M+   +  + ++    +SACA + A+  GK
Sbjct: 280 AARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGK 339

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +I     ++     +FVA +++D Y + G +  A ++F  +P K+ ASWN +I      G
Sbjct: 340 QIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISALASHG 399

Query: 239 EVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEM 295
           +   A++LF+ M ++G G  P  ++++ +L+AC H GLV +G + FD M     + P   
Sbjct: 400 KAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTLFGLVPKIE 459

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY+CMVDLL RAG + +A  LI+ +P +PD    GALLGACR   NV++G      +  +
Sbjct: 460 HYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGALLGACRSKKNVDIGERVIRMILEV 519

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            P + G YI+ S +YA    W++++++R LM+ +   K PGCSW++  + + +F   D
Sbjct: 520 DPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENHLHEFHAGD 577



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 155/280 (55%), Gaps = 5/280 (1%)

Query: 67  ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVS 125
           +CA    L P +  H+ + +  L+ D   T++L  MY++CG +  A+ VF+ I  RD VS
Sbjct: 125 SCANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVS 184

Query: 126 YNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           +N +I GY++     E++ +F EM R  G + D +S +  + AC  L  ++ G+ + G  
Sbjct: 185 WNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFV 244

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
           + + +  + ++ ++++  Y + G +  A +IFD +  +D  +WN +I GY   G  D AI
Sbjct: 245 VERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAI 304

Query: 245 NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-CMVDL 303
           +LF AM+ED V  + ++  A+L+AC+  G ++ GK+  DE  +      ++  A  ++D+
Sbjct: 305 SLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQ-IDEYASQRGFQHDIFVATALIDM 363

Query: 304 LGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             + G +  A ++ K +P + +A+ W A++ A   +G  +
Sbjct: 364 YAKCGSLASAQRVFKEMPQKNEAS-WNAMISALASHGKAK 402



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 147/329 (44%), Gaps = 46/329 (13%)

Query: 122 DEVSYNILIVGYSQT-SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ ++NI+I   + T      +L+LF  M  L +  +  +F     +CANLA +   +  
Sbjct: 79  NDYAFNIMIRALTTTWHHYPLALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARAA 138

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H +  +  LH+     +S++  Y+R GR+  A K+FD +P +D  SWN++I GY   G  
Sbjct: 139 HSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCA 198

Query: 241 DTAINLFEAM-REDGVGYDPVSYIAILTACS-----------HGGLVEKG---------- 278
             A+ +F  M R DG   D +S +++L AC             G +VE+G          
Sbjct: 199 REAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSA 258

Query: 279 --------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IKNLP 321
                         ++ FD M A  V    + +  ++    + G+ ++A+ L   +K   
Sbjct: 259 LISMYAKCGDLGSARRIFDGMAARDV----ITWNAVISGYAQNGMADEAISLFHAMKEDC 314

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY-ILLSNMYAEAGKWDEAS 380
           V  +     A+L AC   G ++LG    E+      QH  +    L +MYA+ G    A 
Sbjct: 315 VTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQ 374

Query: 381 KV-RELMKSREAKKNPGCSWVQTRDEVQD 408
           +V +E+ +  EA  N   S + +  + ++
Sbjct: 375 RVFKEMPQKNEASWNAMISALASHGKAKE 403


>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 944

 Score =  280 bits (716), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 143/403 (35%), Positives = 234/403 (58%), Gaps = 3/403 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +      A  LF+ +  K+IV WN ++  F +      AL++   + +    P+S T
Sbjct: 444 MYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGT 503

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS- 119
           +  +  ACA    L  G  +H  I + G   D+ +  AL DMYAKCG L   + +F ++ 
Sbjct: 504 MVGLFSACAIMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLFLLTK 563

Query: 120 -FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +DEVS+N++I GY      +E++S F  M+L  ++ ++V+F+  + A + L+ +++  
Sbjct: 564 HVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILREAM 623

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             H   IR    +   + NS++D Y + G++  + K F  +  KD+ SWN ++  Y M G
Sbjct: 624 AFHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEMENKDTISWNAMLSAYAMHG 683

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
           + + A+ LF  M+E  V  D VSYI++L+AC H GL+++G   F  M +   V+P+  HY
Sbjct: 684 QGELAVALFSVMQESNVRVDSVSYISVLSACRHSGLIQEGWDIFASMCEKHHVEPSMEHY 743

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACMVDLLG AGL ++ + L+  +  EPDA +WGALL AC+I+ NV LG  A  HL  L+P
Sbjct: 744 ACMVDLLGCAGLFDEVLSLLNKMTTEPDARVWGALLAACKIHSNVTLGEVAVHHLLKLEP 803

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
           ++  ++++LS++YA+ G+W++A + R  + +   KK PG SWV
Sbjct: 804 RNPVHHVVLSDIYAQCGRWNDARRTRSHINNHGLKKIPGYSWV 846



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 159/327 (48%), Gaps = 14/327 (4%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL 74
           F  I   +++ +N+ +  +++     KA+ L   +      P+  T   VL AC      
Sbjct: 56  FLQIKNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDF 115

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGY 133
             G  I+  I+  GL  D+++  +L DM+ K GCL+ A+NVF+ +  +D V +N +I G 
Sbjct: 116 HEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGL 175

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           SQ+ +  E+L +F  M++ G + D VS +    A + L  +   K IHG  +R+ +    
Sbjct: 176 SQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICG-- 233

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
            V+NS++D Y + G +  A ++FD + V+D  SW T++ GY   G     + L   MR  
Sbjct: 234 VVSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRG 293

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDE-----MQADSVKPTEMHYACMVDLLGRAG 308
            V  + V+ +  L   +    +EKGK+ ++      + +D V  T +   CM     + G
Sbjct: 294 NVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPI--VCM---YAKCG 348

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGA 335
            ++ A +L  +L    D   W A L A
Sbjct: 349 ELKKARELFLSLEGR-DLVAWSAFLSA 374



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 12/290 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  +  ++ VSW  M+A + +N    + LQL+ +M   N   N V 
Sbjct: 242 MYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVA 301

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + N L   A    L  GKEI+   ++ GL  D+ +   +  MYAKCG L  A+ +F ++ 
Sbjct: 302 VVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLE 361

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V+++  +    +T    E LS+F  M+  G+K D       +S C  ++ I  GK 
Sbjct: 362 GRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKI 421

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+  + + + +  +++  Y R      A  +F+ + +KD   WNTLI G+   G+
Sbjct: 422 MHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGD 481

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG 278
              A+ +F  ++  G+  D  + + + +AC+           HGG+ + G
Sbjct: 482 PHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKSG 531



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 169/347 (48%), Gaps = 6/347 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ K      A  +F  +  K+ V WNAM++  +Q+    +AL++   M +     + V+
Sbjct: 143 MFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGFEVDKVS 202

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + N+ PA +R   +   K IH  ++R+ +     ++N+L DMY KCG ++ AQ VF+ + 
Sbjct: 203 ILNLAPAVSRLGDVGCCKSIHGYVVRRSICG--VVSNSLIDMYCKCGDVHSAQRVFDRMG 260

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD+VS+  ++ GY +     E L L  +MR   +K + V+ + A+   A +  +++GKE
Sbjct: 261 VRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKE 320

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I+   ++  L + + VA  I+  Y + G +  A ++F  L  +D  +W+  +      G 
Sbjct: 321 IYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGY 380

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-KYFDEMQADSVKPTEMHYA 298
               +++F+ M+ +G+  D      +++ C+    +  GK  +   ++AD      M   
Sbjct: 381 PREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKADMESDISM-VT 439

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
            +V +  R  L   A+ L   + ++ D  +W  L+     YG+  L 
Sbjct: 440 TLVSMYIRFELFTYAMTLFNRMQIK-DIVVWNTLINGFTKYGDPHLA 485


>gi|354805199|gb|AER41617.1| pentatricopeptide [Oryza glumipatula]
          Length = 520

 Score =  280 bits (716), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 153/425 (36%), Positives = 237/425 (55%), Gaps = 12/425 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVT 60
           YAKS     A  +F     ++ V WN MV+ ++ + L  +   +   M   + FP +  T
Sbjct: 51  YAKSGLVDRARRVFDETPLRDQVVWNVMVSCYSSHGLVRECWDVFGSMR-RSGFPGDGFT 109

Query: 61  LTNVLPACARGH--------FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
            + +L   A            L  G  +H  +IR GL+ D+ +  AL DMYAKCG +  A
Sbjct: 110 FSALLSVRASSSSCYDHANLLLVLGSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEA 169

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
             VF+ +  R+ VS+N +IV Y +     E+  LF  M   G   D ++    +S+CA++
Sbjct: 170 SRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCADM 229

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
           AA  +  ++H  T+R+ L   L V N+++  Y ++G +  A + F  +   D  +W++++
Sbjct: 230 AAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMV 289

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SV 290
             +  LG   +AI+LF+ M + G+  D ++++ +L+ACSH GL+E G KYF  M  D  +
Sbjct: 290 SSFAYLGLSKSAIDLFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFKYFLLMTRDYKI 349

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
            PT  H AC+VDLLGRAG + DA + + N+  + + ++ GA LGACR+ GN+E   WAA 
Sbjct: 350 DPTPQHLACLVDLLGRAGRIRDAYEFLVNMSCDANVDVIGAFLGACRMRGNIESAKWAAS 409

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
            LF LKP     Y+L+SN YA AG W+E +KVR +M++    K PGCSW++    VQ FV
Sbjct: 410 RLFSLKPDDPINYLLISNTYAAAGDWNELAKVRSVMRNMCGNKVPGCSWIEIGGIVQTFV 469

Query: 411 VNDRM 415
            ND M
Sbjct: 470 SNDMM 474



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 108/214 (50%), Gaps = 8/214 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  + AEAS +F  +  +N VSWNA++  + ++    +A  L   M  H   P+ +T
Sbjct: 159 MYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELT 218

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L ++L +CA         ++HA  +R+GL   L + NAL   Y K G +  A+  F  I 
Sbjct: 219 LASLLSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKNGFVQEAKRTFGMIH 278

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V+++ ++  ++       ++ LF  M   G++ D ++F+G +SAC++   I+ G +
Sbjct: 279 NPDLVTWSSMVSSFAYLGLSKSAIDLFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFK 338

Query: 180 IHGVTIRKH----LHTHLFVANSILDFYTRSGRI 209
              +  R +       HL     ++D   R+GRI
Sbjct: 339 YFLLMTRDYKIDPTPQHL---ACLVDLLGRAGRI 369



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%)

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + ++    +   VA ++ D Y +SG +D A ++FD  P++D   WN ++  Y   G 
Sbjct: 28  VHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVVWNVMVSCYSSHGL 87

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILT 267
           V    ++F +MR  G   D  ++ A+L+
Sbjct: 88  VRECWDVFGSMRRSGFPGDGFTFSALLS 115


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  280 bits (716), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 146/402 (36%), Positives = 234/402 (58%), Gaps = 2/402 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  ++  ++V W  M+  + QN   L AL+L  +    N  PNSVT
Sbjct: 310 MYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVT 369

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL A A+   L  GK IH   ++ GL     + NAL DMYAKC  ++ A  +F  IS
Sbjct: 370 TATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRIS 429

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V++N +I GY++ +   ++L LF +M L G   D +S + A+SA   L  +  GK 
Sbjct: 430 NKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKS 489

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  ++    ++++V  ++L+ Y + G +  A ++FD +  ++S +W  +I GYGM G+
Sbjct: 490 IHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGD 549

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              +I+LF  M +DGV  + +++ +IL+ CSH G+V  GK+YFD M Q  ++ P+  HYA
Sbjct: 550 SAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYA 609

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+L RAG +EDA++ I N+P++ D ++WGA L  C ++  ++    A + + +L P+
Sbjct: 610 CMVDVLARAGNLEDALEFIDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIKRMMVLHPE 669

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
               Y+L+SN+Y   G WD++  +R  M+ +   K PGCS V
Sbjct: 670 RPDLYVLISNLYTSNGMWDKSLAIRRWMQEKGLVKLPGCSSV 711



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 147/269 (54%), Gaps = 1/269 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+     A  +F  I ++N+VSW +M++   QN      L L  +M   N  P+  T
Sbjct: 209 MYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYT 268

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  V+ AC+    L  G+ +H  +I++GL  + F++ AL DMY KCG L+ A+ VF+ +S
Sbjct: 269 IATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELS 328

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           + D V +  +IVGY+Q  +  ++L LF + R   +  + V+    +SA A L  +  GK 
Sbjct: 329 YIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKS 388

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG+ ++  L  +  V N+++D Y +   +  A++IF  +  KD  +WN++I GY     
Sbjct: 389 IHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNM 448

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTA 268
            D A+ LF+ M   G   D +S +  L+A
Sbjct: 449 GDDALMLFKQMSLQGSSPDAISVVNALSA 477



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 116/434 (26%), Positives = 186/434 (42%), Gaps = 50/434 (11%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP---NS 58
           YA     A A  +F      +  S+ AM+    Q      A+ L  +M      P   + 
Sbjct: 107 YAALGDLASARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDD 166

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
             L+  L AC R      G+ +H   I+ G   D F+ N+L DMYAK   L  A+ VF  
Sbjct: 167 FVLSLALKACIRSAEYSYGRSLHCDAIKVG-GADGFVMNSLVDMYAKAEDLECARKVFER 225

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           I  R+ VS+  +I G  Q    S+ L LF++MR   +     +    I+AC+ L  + QG
Sbjct: 226 IPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQG 285

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + +HG  I++ L ++ F++ ++LD Y + G +D A  +FD L   D   W T+I+GY   
Sbjct: 286 RWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQN 345

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HG-----GLVEK---G 278
           G    A+ LF   R   +  + V+   +L+A +           HG     GLVE    G
Sbjct: 346 GNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVVG 405

Query: 279 KKYFDEM-------QADSV-----KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE--- 323
               D         +AD +         + +  M+       + +DA+ L K + ++   
Sbjct: 406 NALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSS 465

Query: 324 PDANIWGALLGACRIYGNVELG----AWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWD 377
           PDA      L A    G++ +G     +A +H F+        Y+   L N+Y + G   
Sbjct: 466 PDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFV-----SNIYVDTALLNLYNKCGDLL 520

Query: 378 EASKVRELMKSREA 391
            A +V + M  R +
Sbjct: 521 SARRVFDEMNDRNS 534



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 22/236 (9%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDM---YAKCGCLNLAQNVFN 117
           L  +LP+C     LR    +HAR++       L    A T +   YA  G L  A+ VF+
Sbjct: 65  LLRLLPSCGTLLSLRV---LHARLLTHPQGLLLGSLRARTKLLSCYAALGDLASARMVFD 121

Query: 118 ISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRL---LGMKHDVVSFMGAISACANLAA 173
            + R D  SY  ++    QT   +++++L  +MR         D      A+ AC   A 
Sbjct: 122 GTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAE 181

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
              G+ +H   I+       FV NS++D Y ++  ++ A K+F+ +P ++  SW ++I G
Sbjct: 182 YSYGRSLHCDAIKVG-GADGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISG 240

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG 278
               G     + LF  MR+D V     +   ++TACS           HG ++++G
Sbjct: 241 CVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQG 296


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 148/416 (35%), Positives = 245/416 (58%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K  R   A  +F  +  ++IVSWN M+A +  +  +++AL+L   M       +  T
Sbjct: 101 LYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFT 160

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L++ + ACA  + +   K++H   ++  L+ + F+  A+ D+YAKC  +  A  VF  + 
Sbjct: 161 LSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMP 220

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  V+++ L  GY Q     E+L LF   +  G++    +    +SACA+LA   +G +
Sbjct: 221 ERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQ 280

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H V ++   H + FVA S++D Y R G+I+ A  +F  +  K+   WN +I  +     
Sbjct: 281 LHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAH 340

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LFE M++ G+  + V+Y+++L+ CSH GLVEKG+ YF  + +D +V+P  +HY+
Sbjct: 341 SWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYS 400

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGR+G  ++A +L+  +P EP A++WG+LLG+CR Y N+ L   AAE LF L+P 
Sbjct: 401 CMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPD 460

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + G ++LLSN+YA +G W+     R+ +K   AKK  G SW++ + +V  FVV +R
Sbjct: 461 NGGNHVLLSNVYAASGNWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGER 516



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 144/304 (47%), Gaps = 7/304 (2%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
           ++  L  CA+   L  GK  H   I  GL  D    N L ++Y KCG  + A+ VF+I  
Sbjct: 60  ISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMH 119

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS+N +I GY+ + +  ++L LFS M   G      +    I ACA   AI + K+
Sbjct: 120 VRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQ 179

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + ++  L ++ FV  +ILD Y +   I  A  +F+ +P +   +W++L  GY   G 
Sbjct: 180 LHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGL 239

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A++LF   + +GV     +  AIL+AC+   L  +G +    +            A 
Sbjct: 240 HEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAAS 299

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VD+  R G +E A  L   +    +  IW A++ +   + +    +W A  LF  K Q 
Sbjct: 300 LVDVYARCGQIEKAYALFAYME-HKNVVIWNAMIASFSRHAH----SWEAMILFE-KMQQ 353

Query: 360 CGYY 363
            G +
Sbjct: 354 LGIF 357



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 1/179 (0%)

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
           DV +    +  CA   ++  GK  HG+ I   L T     N +++ YT+ GR D A  +F
Sbjct: 56  DVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVF 115

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
           D + V+   SWNT+I GY   GE   A+ LF  M  +G      +  + + AC+    + 
Sbjct: 116 DIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAIN 175

Query: 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           + K+        ++         ++D+  +  +++DA  + + +P E     W +L   
Sbjct: 176 ECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMP-ERTLVTWSSLFAG 233


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 152/415 (36%), Positives = 244/415 (58%), Gaps = 3/415 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVT 60
           YAK  R  +A  LF  + +++  SWNA ++ +  +    +AL+L R M  H     N  T
Sbjct: 163 YAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFT 222

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L++ L A A    LR GKEIH  +IR  LN D  + +AL D+Y KCG L+ A+ +F+ + 
Sbjct: 223 LSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMK 282

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  +I    +     E   LF ++   G++ +  +F G ++ACA+ AA   GKE
Sbjct: 283 DRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKE 342

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  +        F  ++++  Y++ G   +A ++F+ +   D  SW +LI+GY   G+
Sbjct: 343 VHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQ 402

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
            D A++ FE + + G   D V+Y+ +L+AC+H GLV+KG +YF  + +   +  T  HYA
Sbjct: 403 PDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYA 462

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C++DLL R+G  ++A  +I N+PV+PD  +W +LLG CRI+GN+EL   AA+ L+ ++P+
Sbjct: 463 CVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPE 522

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +   YI L+N+YA AG W E + VR+ M +    K PG SW++ + +V  F+V D
Sbjct: 523 NPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGD 577



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 6/278 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     EA  +F  + ++++VSW  M+    ++    +   L R++      PN  T
Sbjct: 264 LYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYT 323

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL ACA       GKE+H  ++  G +   F  +AL  MY+KCG   +A+ VFN + 
Sbjct: 324 FAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMH 383

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VS+  LIVGY+Q     E+L  F  +   G K D V+++G +SAC +   + +G E
Sbjct: 384 QPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLE 443

Query: 180 IHGVTIRKH--LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGM 236
                  KH  +HT    A  ++D   RSGR   A  I D +PVK D   W +L+ G  +
Sbjct: 444 YFHSIKEKHGLMHTADHYA-CVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRI 502

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL 274
            G ++ A    +A+ E     +P +YI +    ++ GL
Sbjct: 503 HGNLELAKRAAKALYEIE-PENPATYITLANIYANAGL 539



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 146/355 (41%), Gaps = 52/355 (14%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P++   + ++ AC R   L  G+ +HA          +F++N L DMYAKCG L  AQ +
Sbjct: 85  PSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQML 144

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN---- 170
           F+ +  RD  S+N +IVGY++     ++  LF EM     + D  S+  AIS        
Sbjct: 145 FDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEM----PQRDNFSWNAAISGYVTHNQP 200

Query: 171 --------------------------------LAAIKQGKEIHGVTIRKHLHTHLFVANS 198
                                           +  ++ GKEIHG  IR  L+    V ++
Sbjct: 201 REALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSA 260

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
           +LD Y + G +D A  IFD +  +D  SW T+I      G  +    LF  + + GV  +
Sbjct: 261 LLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPN 320

Query: 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
             ++  +L AC+       GK+    M      P     + +V +  + G    A ++  
Sbjct: 321 EYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFN 380

Query: 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML------KPQHCGYYILLS 367
            +  +PD   W +L+      G  +     A H F L      KP    Y  +LS
Sbjct: 381 EMH-QPDLVSWTSLIVGYAQNGQPD----EALHFFELLLQSGTKPDQVTYVGVLS 430


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/419 (35%), Positives = 250/419 (59%), Gaps = 9/419 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK        + F  + EK+++SW  ++A +AQN   L+A+ L R++ +     + + 
Sbjct: 393 MYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMM 452

Query: 61  LTNVLPACA---RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF- 116
           + +VL AC+     +F+R   EIH  + ++ L  D+ L NA+ ++Y + G ++ A+  F 
Sbjct: 453 IGSVLRACSGLKSRNFIR---EIHGYVFKRDLA-DIMLQNAIVNVYGEVGHIDYARRAFE 508

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
           +I  +D VS+  +I          E+L LF  ++   ++ D ++ + A+SA ANL+++K+
Sbjct: 509 SIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKK 568

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GKEIHG  IRK       +A+S++D Y   G ++ + K+F  +  +D   W ++I   GM
Sbjct: 569 GKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGM 628

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPTEM 295
            G  + AI LF+ M +  V  D ++++A+L ACSH GL+ +GK++F+ M+    ++P   
Sbjct: 629 HGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPE 688

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYACMVDLL R+  +E+A   ++N+P++P + IW ALLGAC I+ N ELG  AA+ L   
Sbjct: 689 HYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQS 748

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             ++ G Y L+SN++A  G+W++  +VR  MK    KKNPGCSW++  +++  F+  D+
Sbjct: 749 DTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDK 807



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 199/390 (51%), Gaps = 6/390 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R  +A  +F ++  ++ VSWN +++   QN L   AL   R+M    + P+ V+
Sbjct: 292 MYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVS 351

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + N++ A  R   L  GKE+HA  IR GL+ ++ + N L DMYAKC C+    + F  + 
Sbjct: 352 VLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMH 411

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+  +I GY+Q     E+++LF ++++ GM  D +     + AC+ L +    +E
Sbjct: 412 EKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIRE 471

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG   ++ L   + + N+I++ Y   G ID A + F+ +  KD  SW ++I      G 
Sbjct: 472 IHGYVFKRDL-ADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGL 530

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ LF ++++  +  D ++ I+ L+A ++   ++KGK+    +            + 
Sbjct: 531 PVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASS 590

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY--GNVELGAWAAEHLFMLKP 357
           +VD+    G +E++ K+  ++  + D  +W +++ A  ++  GN  +  +       + P
Sbjct: 591 LVDMYACCGTVENSRKMFHSVK-QRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIP 649

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMK 387
            H  +  LL    + +G   E  +  E+MK
Sbjct: 650 DHITFLALLYAC-SHSGLMVEGKRFFEIMK 678



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 151/283 (53%), Gaps = 3/283 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  ++E+ I SWNA++  F  +   L+A++L ++M +     ++ T
Sbjct: 88  MYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACT 147

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
             +VL AC      R G EIH   ++ G    +F+ NAL  MY KCG L  A+ +F+   
Sbjct: 148 FPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIM 207

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +   D VS+N +I  +    +C E+LSLF  M+ +G+  +  +F+ A+    + + +K G
Sbjct: 208 MEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
             IHG  ++ +    ++VAN+++  Y + GR++ A ++F+ +  +D  SWNTL+ G    
Sbjct: 268 MGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQN 327

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
                A+N F  M+  G   D VS + ++ A    G + KGK+
Sbjct: 328 ELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKE 370



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 135/279 (48%), Gaps = 18/279 (6%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L  C     L  G+++HA +++  L+   FL   L  MY KCG L  A  VF+ +S R 
Sbjct: 52  LLDLCVAAKALPQGQQLHALLLKSHLS--AFLATKLVLMYGKCGSLRDAVKVFDEMSERT 109

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
             S+N L+  +  +    E++ L+ +MR+LG+  D  +F   + AC  L   + G EIHG
Sbjct: 110 IFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHG 169

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNTLILGYGMLGEV 240
           V ++      +FV N+++  Y + G +  A  +FD + +  +D+ SWN++I  +   G  
Sbjct: 170 VAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNC 229

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-- 298
             A++LF  M+E GV  +  +++A L        V+ G      M          H+A  
Sbjct: 230 LEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG------MGIHGAVLKSNHFADV 283

Query: 299 ----CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                ++ +  + G MEDA ++ +++    D   W  LL
Sbjct: 284 YVANALIAMYAKCGRMEDAGRVFESMLCR-DYVSWNTLL 321



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 114/264 (43%), Gaps = 47/264 (17%)

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C    A+ QG+++H + ++ HL    F+A  ++  Y + G +  A K+FD +  +   SW
Sbjct: 56  CVAAKALPQGQQLHALLLKSHLSA--FLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSW 113

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           N L+  +   G+   AI L++ MR  GV  D  ++ ++L AC   G    G     E+  
Sbjct: 114 NALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGA----EIHG 169

Query: 288 DSVKP--TEMHYAC--MVDLLGRAGLMEDAVKLIKNLPVEPDANI-WGALLGACRIYGNV 342
            +VK    E  + C  ++ + G+ G +  A  L   + +E +  + W +++ A    GN 
Sbjct: 170 VAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNC 229

Query: 343 -----------ELGAWAAEHLF----------------------MLKPQH-CGYYI--LL 366
                      E+G  +  + F                      +LK  H    Y+   L
Sbjct: 230 LEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANAL 289

Query: 367 SNMYAEAGKWDEASKVRELMKSRE 390
             MYA+ G+ ++A +V E M  R+
Sbjct: 290 IAMYAKCGRMEDAGRVFESMLCRD 313


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 152/449 (33%), Positives = 247/449 (55%), Gaps = 37/449 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y ++     A  L   + +   V+WNAM++ +       +A  L+R M       +  T 
Sbjct: 218 YVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTY 277

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGL----NFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           T+V+ A +       G+++HA ++R  +    +F L + NAL  +Y +CG L  A+ VF+
Sbjct: 278 TSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFD 337

Query: 118 -ISFRDEVSYN-------------------------------ILIVGYSQTSDCSESLSL 145
            +  +D VS+N                               ++I G +Q     E L L
Sbjct: 338 KMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKL 397

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           F++M+L G++    ++ GAI++C+ L ++  G+++H   I+    + L V N+++  Y+R
Sbjct: 398 FNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSR 457

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
            G ++ A+ +F  +P  DS SWN +I      G    AI L+E M ++ +  D ++++ I
Sbjct: 458 CGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTI 517

Query: 266 LTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           L+ACSH GLV++G+ YFD M+    + P E HY+ ++DLL RAG+  +A  + +++P EP
Sbjct: 518 LSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEP 577

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
            A IW ALL  C I+GN+ELG  AA+ L  L PQ  G YI LSNMYA  G+WDE ++VR+
Sbjct: 578 GAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRK 637

Query: 385 LMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           LM+ R  KK PGCSW++  + V  F+V+D
Sbjct: 638 LMRERGVKKEPGCSWIEVENMVHVFLVDD 666



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 169/392 (43%), Gaps = 67/392 (17%)

Query: 21  KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA-----RGHFLR 75
           ++ VS+NAM+  F+ +     ALQL  +M      P+  T ++VL A +       H   
Sbjct: 93  RDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETH--- 149

Query: 76  PGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL---------AQNVFNIS---FRDE 123
             +++H  + + G      + NAL   Y  C    L         A+ +F+ +    RDE
Sbjct: 150 -CQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDE 208

Query: 124 VSYNILIVGYSQTSDC-------------------------------SESLSLFSEMRLL 152
            ++  +I GY +  D                                 E+  L   M  L
Sbjct: 209 PAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSL 268

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL----HTHLFVANSILDFYTRSGR 208
           G++ D  ++   ISA +N      G+++H   +R  +    H  L V N+++  YTR G+
Sbjct: 269 GIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGK 328

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +  A ++FD +PVKD  SWN ++ G      ++ A ++F  M    +    +++  +++ 
Sbjct: 329 LVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSL----LTWTVMISG 384

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IKNLPVEPD 325
            +  G  E+G K F++M+ + ++P +  YA  +      G +++  +L   I  L  +  
Sbjct: 385 LAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSS 444

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            ++  AL+      G VE    AA+ +F+  P
Sbjct: 445 LSVGNALITMYSRCGLVE----AADTVFLTMP 472



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 134/300 (44%), Gaps = 51/300 (17%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNA-------------------------------M 29
           +Y +  +  EA  +F  +  K++VSWNA                               M
Sbjct: 322 LYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVM 381

Query: 30  VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
           ++  AQN    + L+L  +M +    P        + +C+    L  G+++H++II+ G 
Sbjct: 382 ISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGH 441

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
           +  L + NAL  MY++CG +  A  VF  + + D VS+N +I   +Q     +++ L+ +
Sbjct: 442 DSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEK 501

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKE-------IHGVTIRKHLHTHLFVANSILD 201
           M    +  D ++F+  +SAC++   +K+G+         +G+T  +  ++ L      +D
Sbjct: 502 MLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRL------ID 555

Query: 202 FYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGMLGEVDTAIN----LFEAM-REDGV 255
              R+G    A  + + +P +  A  W  L+ G  + G ++  I     L E M ++DG 
Sbjct: 556 LLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGT 615



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 125/304 (41%), Gaps = 69/304 (22%)

Query: 92  DLFLTNALTDMYAKCGCLNLAQNVFN---ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
           D+     +   Y+  G + LA  +FN   +S RD VSYN +I  +S + D   +L LF +
Sbjct: 61  DIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQ 120

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF---------VANSI 199
           M+ LG   D  +F   + A + +A     +E H     + LH  +F         V N++
Sbjct: 121 MKRLGFVPDPFTFSSVLGALSLIA----DEETHC----QQLHCEVFKWGALSVPSVLNAL 172

Query: 200 LDFYTRSGRIDLAN---------KIFDCLPV--KDSASWNTLILGY-------------- 234
           +  Y       L N         K+FD  P   +D  +W T+I GY              
Sbjct: 173 MSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLE 232

Query: 235 GML-----------------GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
           GM                  G  + A +L   M   G+  D  +Y ++++A S+ GL   
Sbjct: 233 GMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNI 292

Query: 278 GKKYFDEMQADSVKPTEMHYA-----CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
           G++    +    V+P+  H+       ++ L  R G + +A ++   +PV+ D   W A+
Sbjct: 293 GRQVHAYVLRTVVQPSG-HFVLSVNNALITLYTRCGKLVEARRVFDKMPVK-DLVSWNAI 350

Query: 333 LGAC 336
           L  C
Sbjct: 351 LSGC 354



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 7/164 (4%)

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
           A L+     + +H   +         + N ++D Y +S  I  A  +FD +P  D  +  
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           T++  Y   G +  A  LF A        D VSY A++TA SH        + F +M+  
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMS--IRDTVSYNAMITAFSHSHDGHAALQLFVQMKRL 124

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
              P    ++    +LG   L+ D     + L  E     WGAL
Sbjct: 125 GFVPDPFTFS---SVLGALSLIADEETHCQQLHCE--VFKWGAL 163


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 155/486 (31%), Positives = 253/486 (52%), Gaps = 71/486 (14%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA    P    ++F  I +KN+V +N M+ ++  N L   AL + + M     +P++ T 
Sbjct: 81  YAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTY 140

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL AC+    L  G +IH  +++ GL+ +L++ N L  MY KC  L+ A+ V + +  
Sbjct: 141 PCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPG 200

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI------SACANLAAI 174
           RD VS+N ++ GY+Q    +++L L  EM  L +K D  + MG++      ++C N+  +
Sbjct: 201 RDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGT-MGSLLPAVTNTSCDNVLYV 259

Query: 175 KQ----------------------------------GKEIHGV----------------- 183
           K                                     ++HGV                 
Sbjct: 260 KDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDL 319

Query: 184 ---TIRKHLHTH---------LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
               + + +H +         L + N+++D Y + G +  A  +FD +  +D  SW ++I
Sbjct: 320 SAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMI 379

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
             YGM G+   A+ LF+ MR+ G   D ++++++L ACSH GLV++G+  F+ M    + 
Sbjct: 380 SAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMAEYGIT 439

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
           P   HY CMVDLLGRAG +++A  L + +P+EP+  +WG+LL ACR+Y ++ +   AA+H
Sbjct: 440 PGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADH 499

Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           LF L P+  GYY+LLSN+YA+AG+W +   VR +M S+  KK PG S V+  D V  F+ 
Sbjct: 500 LFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLA 559

Query: 412 NDRMKT 417
            D+  T
Sbjct: 560 GDQSHT 565



 Score = 44.7 bits (104), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 43/200 (21%)

Query: 175 KQGKEIHG-VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           K  K++H  + I ++LH +  +   ++  Y   G       IFD +  K+   +N +I  
Sbjct: 52  KTLKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRS 111

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG---- 278
           Y   G    A+ +F+ M   G   D  +Y  +L ACS           HG +V+ G    
Sbjct: 112 YVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMN 171

Query: 279 --------------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL-- 316
                               ++  DEM    +    + +  MV    + G   DA+KL  
Sbjct: 172 LYIGNGLVSMYGKCKWLDAARRVLDEMPGRDM----VSWNSMVAGYAQNGRFNDALKLCR 227

Query: 317 -IKNLPVEPDANIWGALLGA 335
            +++L ++PDA   G+LL A
Sbjct: 228 EMEDLKLKPDAGTMGSLLPA 247



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 52/112 (46%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     EA  +F  +  +++VSW +M++ +  +     A+ L ++M      P+ + 
Sbjct: 350 MYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIA 409

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
             +VL AC+    +  G+     +   G+   +   N + D+  + G ++ A
Sbjct: 410 FVSVLAACSHAGLVDEGRYCFNLMAEYGITPGIEHYNCMVDLLGRAGKIDEA 461


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 145/416 (34%), Positives = 244/416 (58%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAKS +  +A  +F  + ++++VSW  M+  FAQ+   L A+ + R M       + V 
Sbjct: 128 LYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVV 187

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  ++ AC      + G  +H  ++R+ +N D  L  +L DMYAK G L LA  VF  I 
Sbjct: 188 MVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIP 247

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           ++  +S+  LI G++Q    +++L+   EM+  G K D+VS + ++SACA +  +K GK 
Sbjct: 248 YKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKS 307

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  I K L+       +++D Y + G +  A  +FD +  +D   WN +I  YG+ G+
Sbjct: 308 LHG-HIVKRLYLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGD 366

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYA 298
              A++LF  M+E  +  D  ++ ++L+ACSH GLVE+G+ +F  +   S ++P+E HYA
Sbjct: 367 GIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYA 426

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLL RAG +E+A +LI+++ ++P   IW ALL  C  + N+ +G   A+ +    P 
Sbjct: 427 CMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNHKNLLIGEMVAKKILESNPD 486

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G Y+L+SN ++ A KWD+A+  R++MK+   +K PG S V+   ++Q F++ D+
Sbjct: 487 DLGIYVLVSNFFSMAKKWDDAAVFRKIMKNTGMRKVPGYSAVEVNGDLQAFLMEDK 542



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 211/437 (48%), Gaps = 44/437 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y + +    A  +F  + +++I +WN+M+  +++     + L L   M      P+S T 
Sbjct: 28  YGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRTNYPDEVLNLYYRMISEGIKPDSSTF 87

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T  L AC+    L  G+ I  + +  G  FD+F+ +++ ++YAK G ++ A+ VF+ +  
Sbjct: 88  TVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFDKMVK 147

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD VS+  +I G++Q+    +++ ++  M+    + D V  +G I AC +L   K G  +
Sbjct: 148 RDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSV 207

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  +R+ ++    +  S++D Y ++G+++LA+++F+ +P K   SW  LI G+   G  
Sbjct: 208 HGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFA 267

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK---------YFDEMQA---- 287
           +  +     M+  G   D VS I+ L+AC+  G ++ GK          Y D++      
Sbjct: 268 NKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLYLDKVSGTALI 327

Query: 288 ----------------DSVKPTEM-HYACMVDLLGRAGLMEDAVKL---IKNLPVEPDAN 327
                           D ++P ++  +  M+   G  G   +A+ L   +K   + PD  
Sbjct: 328 DMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHA 387

Query: 328 IWGALLGACRIYGNVELGAWAAEHLF---MLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
            + +LL AC   G VE G +    L     ++P    +Y  + ++ + AG+ +EA ++ E
Sbjct: 388 TFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSE-KHYACMVDLLSRAGQVEEAYQLIE 446

Query: 385 LMKSREAKKNPGCS-WV 400
            M  +     PG + WV
Sbjct: 447 SMHIK-----PGLAIWV 458



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 136/264 (51%), Gaps = 17/264 (6%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLN---LAQNVF-NISFRDEVSYNILIVGYS 134
           +IHA I+  GL F+    N++  + A  G +N    A+NVF  +  R   ++N +I+ YS
Sbjct: 3   QIHALILTTGLFFND--ANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYS 60

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
           +T+   E L+L+  M   G+K D  +F   + AC++L  +  G+ I    +       +F
Sbjct: 61  RTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVF 120

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           V +S+L+ Y +SG++D A  +FD +  +D  SW T+I G+   G    AI+++  M+++ 
Sbjct: 121 VVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKER 180

Query: 255 VGYDPVSYIAILTAC-----SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
              D V  + ++ AC     S  GL   G     EM  D+V  T      ++D+  + G 
Sbjct: 181 TEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTS-----LIDMYAKNGK 235

Query: 310 MEDAVKLIKNLPVEPDANIWGALL 333
           +E A ++ + +P +   + WGAL+
Sbjct: 236 LELASRVFEGIPYKSVIS-WGALI 258


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 146/415 (35%), Positives = 230/415 (55%), Gaps = 40/415 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  + ++++V+WNAM+A  +Q+                        
Sbjct: 159 MYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSED---------------------- 196

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
                P  AR            R+  + ++ D      +   YA  GC      +F+   
Sbjct: 197 -----PYVAR------------RVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMK 239

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
              V++N++I  Y Q     E++S F +MRL     + V+F+  + A A LAA ++G   
Sbjct: 240 LGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAF 299

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   I+    ++  V NS++D Y + G++D + K+F+ +  KD+ SWN ++ GY + G  
Sbjct: 300 HACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHG 359

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
           D AI LF  M+E  V  D VS++++L+AC H GLVE+G+K F  M     +KP   HYAC
Sbjct: 360 DRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYAC 419

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGRAGL ++ +  IK +PVEPDA +WGALLG+CR++ NV+LG  A +HL  L+P++
Sbjct: 420 MVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRN 479

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             ++++LS++YA++G+W +A K R  M     KK PGCSWV+ +++V  F V D+
Sbjct: 480 PAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDK 534



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 124/259 (47%), Gaps = 23/259 (8%)

Query: 53  NEFPN--SVTLTN------VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104
           +EFP+  S T TN      +L +C     L P  +IHA+II  G      +T+ L ++Y+
Sbjct: 39  SEFPSLSSSTYTNYLHYPRLLSSCKH---LNPLLQIHAQIIVSGFKHHHSITH-LINLYS 94

Query: 105 KCGCLNLAQNVFNISFR-DEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFM 162
                +LA++VF+ +     + +N +I  Y+++   +E+L ++  M    G++ DV    
Sbjct: 95  LFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGA 154

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
           G +   + +  +K+ +E+     ++ +       N+++   ++S    +A ++FD +  +
Sbjct: 155 GLVDMYSKMGDLKRAREVFDKMPKRDV----VAWNAMIAGLSQSEDPYVARRVFDQMVDQ 210

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282
           D  SW T++ GY   G     + LF+ M+   V ++      I+ A    G  ++    F
Sbjct: 211 DDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWN-----VIIAAYMQNGHAKEAISSF 265

Query: 283 DEMQADSVKPTEMHYACMV 301
            +M+ ++  P  + +  ++
Sbjct: 266 HQMRLENFHPNSVTFVSVL 284


>gi|354805211|gb|AER41628.1| pentatricopeptide [Oryza nivara]
 gi|354805240|gb|AER41654.1| pentatricopeptide [Oryza rufipogon]
          Length = 520

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 153/425 (36%), Positives = 236/425 (55%), Gaps = 12/425 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVT 60
           YAKS     A  +F     ++ V WN MV+ ++ + L  +   +   M   + FP +  T
Sbjct: 51  YAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGLVRECWDVFGSMR-RSGFPGDGFT 109

Query: 61  LTNVLPACARGH--------FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
            + +L   A            L  G  +H  +IR GL+ D+ +  AL DMYAKCG +  A
Sbjct: 110 FSALLSVRASSSSCYDHANLLLVLGSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEA 169

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
             VF+ +  R+ VS+N +IV Y +     E+  LF  M   G   D ++     S+CA++
Sbjct: 170 SRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELTLASLFSSCADM 229

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
           AA  +  ++H  T+R+ L   L V N+++  Y ++G +  A + F  +   D  +W++++
Sbjct: 230 AAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMV 289

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SV 290
             +  LG   +AI+LF+ M + G+  D ++++ +L+ACSH GL+E G KYF  M  D  +
Sbjct: 290 SSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFKYFLLMTRDYKI 349

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
            PT  H AC+VDLLGRAG + DA + + N+  + + ++ GA LGACR+ GN+E   WAA 
Sbjct: 350 DPTPQHLACLVDLLGRAGRIRDAYEFLVNMSCDANVDVIGAFLGACRMRGNIESAKWAAS 409

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
            LF LKP     Y+L+SN YA AG W+E +KVR +M++    K PGCSW++    VQ FV
Sbjct: 410 RLFSLKPDDPINYLLISNTYAAAGDWNELAKVRSVMRNMCGNKVPGCSWIEIGGIVQTFV 469

Query: 411 VNDRM 415
            ND M
Sbjct: 470 SNDMM 474



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 107/214 (50%), Gaps = 8/214 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  + AEAS +F  +  +N VSWNA++  + ++    +A  L   M  H   P+ +T
Sbjct: 159 MYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELT 218

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L ++  +CA         ++HA  +R+GL   L + NAL   Y K G +  A+  F  I 
Sbjct: 219 LASLFSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKNGFVQEAKRTFGMIH 278

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V+++ ++  ++       ++ LF  M   G++ D ++F+G +SAC++   I+ G +
Sbjct: 279 NPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFK 338

Query: 180 IHGVTIRKH----LHTHLFVANSILDFYTRSGRI 209
              +  R +       HL     ++D   R+GRI
Sbjct: 339 YFLLMTRDYKIDPTPQHL---ACLVDLLGRAGRI 369



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 48/88 (54%)

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H ++++    +   VA ++ D Y +SG +D A ++FD  P++D   WN ++  Y   G 
Sbjct: 28  VHPLSVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGL 87

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILT 267
           V    ++F +MR  G   D  ++ A+L+
Sbjct: 88  VRECWDVFGSMRRSGFPGDGFTFSALLS 115


>gi|297800844|ref|XP_002868306.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314142|gb|EFH44565.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 458

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 146/393 (37%), Positives = 229/393 (58%), Gaps = 3/393 (0%)

Query: 8   PAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL-VREMPIHNEFPNSVTLTNVLP 66
           P   S  +H +  +NI SWN ++  F+++     ++ + +R     N  P+  TL  VL 
Sbjct: 65  PTSLSVFWH-MPCRNIFSWNIIIGEFSRSGFASISIGMFLRMWRESNVRPDDFTLPLVLR 123

Query: 67  ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVS 125
           AC+     + G  IH   ++ G N  LF+ +AL  MY   G +  A+ +F+ +  RD V 
Sbjct: 124 ACSASREAKFGDLIHVLCLKLGFNASLFVRSALVIMYVDLGEILHARKLFDDMPVRDSVL 183

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           Y  +  GY Q  +    L++F EMR  G   D V  +  + AC  L A+K GK +HG  I
Sbjct: 184 YTAMFGGYVQQGEALLGLAVFREMRYSGFLLDSVVMVSLLMACGQLGALKHGKSVHGWCI 243

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
           R+     L + N+I D Y +   +D A+ +F  +P +D  SW++LILGYG+ G+V  +I 
Sbjct: 244 RRCSCFGLNLGNAITDMYVKCSILDYAHTVFVNMPRRDVISWSSLILGYGLDGDVVVSIK 303

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           LF+ M ++G+  + V+++ +L+AC+HGGLVEK   Y   MQ   + P   HYA + D + 
Sbjct: 304 LFDEMLQEGIEPNAVTFLGVLSACAHGGLVEKSWLYLRLMQEYKIVPELKHYASVADCMS 363

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365
           RAGL+E+A K ++++PVEPD  + GA+L  C++YGNVE+G   A  L  L+P+   YY+ 
Sbjct: 364 RAGLLEEAEKFLEDMPVEPDEAVLGAVLSGCKVYGNVEVGERVARKLIQLEPRKGSYYVT 423

Query: 366 LSNMYAEAGKWDEASKVRELMKSREAKKNPGCS 398
           L+ +Y+ AG++DEA  +R+LMK ++  K PGCS
Sbjct: 424 LAGLYSAAGRFDEAESLRQLMKEKQISKVPGCS 456



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 123/245 (50%), Gaps = 2/245 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY        A  LF ++  ++ V + AM   + Q    L  L + REM       +SV 
Sbjct: 159 MYVDLGEILHARKLFDDMPVRDSVLYTAMFGGYVQQGEALLGLAVFREMRYSGFLLDSVV 218

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + ++L AC +   L+ GK +H   IR+   F L L NA+TDMY KC  L+ A  VF N+ 
Sbjct: 219 MVSLLMACGQLGALKHGKSVHGWCIRRCSCFGLNLGNAITDMYVKCSILDYAHTVFVNMP 278

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S++ LI+GY    D   S+ LF EM   G++ + V+F+G +SACA+   +++   
Sbjct: 279 RRDVISWSSLILGYGLDGDVVVSIKLFDEMLQEGIEPNAVTFLGVLSACAHGGLVEKSWL 338

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGMLG 238
              +     +   L    S+ D  +R+G ++ A K  + +PV+ D A    ++ G  + G
Sbjct: 339 YLRLMQEYKIVPELKHYASVADCMSRAGLLEEAEKFLEDMPVEPDEAVLGAVLSGCKVYG 398

Query: 239 EVDTA 243
            V+  
Sbjct: 399 NVEVG 403



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 149/337 (44%), Gaps = 46/337 (13%)

Query: 92  DLFLTNALTDMYAKCGCL-NLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
           ++ L++ L   Y+K   L   + +VF ++  R+  S+NI+I  +S++   S S+ +F  M
Sbjct: 46  NVVLSSKLVLAYSKMNHLFPTSLSVFWHMPCRNIFSWNIIIGEFSRSGFASISIGMFLRM 105

Query: 150 -RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
            R   ++ D  +    + AC+     K G  IH + ++   +  LFV ++++  Y   G 
Sbjct: 106 WRESNVRPDDFTLPLVLRACSASREAKFGDLIHVLCLKLGFNASLFVRSALVIMYVDLGE 165

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           I  A K+FD +PV+DS  +  +  GY   GE    + +F  MR  G   D V  +++L A
Sbjct: 166 ILHARKLFDDMPVRDSVLYTAMFGGYVQQGEALLGLAVFREMRYSGFLLDSVVMVSLLMA 225

Query: 269 CSHGGLVEKGKKY----------FDEMQADSVKPTEMHYACMV----------------- 301
           C   G ++ GK            F     +++  T+M+  C +                 
Sbjct: 226 CGQLGALKHGKSVHGWCIRRCSCFGLNLGNAI--TDMYVKCSILDYAHTVFVNMPRRDVI 283

Query: 302 ---DLLGRAGLMEDAVKLIKNLP------VEPDANIWGALLGACRIYGNVELGAWAAEHL 352
               L+   GL  D V  IK         +EP+A  +  +L AC   G VE  +W    L
Sbjct: 284 SWSSLILGYGLDGDVVVSIKLFDEMLQEGIEPNAVTFLGVLSACAHGGLVE-KSWLYLRL 342

Query: 353 ---FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
              + + P+   +Y  +++  + AG  +EA K  E M
Sbjct: 343 MQEYKIVPE-LKHYASVADCMSRAGLLEEAEKFLEDM 378


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/412 (35%), Positives = 241/412 (58%), Gaps = 7/412 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA S        +F      +++SW  ++  +++     +A+     M   N   + +TL
Sbjct: 183 YAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRM---NCTADRMTL 239

Query: 62  TNVLPACARGHFLRPGKEIHARIIRK--GLNFDLFLTNALTDMYAKCGCLNLAQNVFNI- 118
             VL AC++      GK+I A +      ++ D+FL NAL DMY KCG  +LA+ +F++ 
Sbjct: 240 VVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLM 299

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             ++ VS+N +I G +      E+L +F  M+ +G+K D V+ +G +++CANL  ++ GK
Sbjct: 300 PVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGK 359

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H    + H+    +VAN+++D Y + G ID A  +F  +  KD  S+  +I+G+ M G
Sbjct: 360 WVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHG 419

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
           + D A+ +F  M   GV  D V+ + +L+ACSH GL+E+G+++F +M +   ++P   HY
Sbjct: 420 KADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHY 479

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLLGRAGL+ +A      +P+ PDA++WG+LLGAC+I+  VELG    + L  ++P
Sbjct: 480 GCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACKIHAKVELGETVIQKLIEMEP 539

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
           +  G YIL+SN+Y+ A +W +A K R+ MK    KK PGCS ++    V +F
Sbjct: 540 ERDGAYILMSNIYSSANRWRDALKWRKAMKQNNIKKTPGCSSIEVDGMVHEF 591



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 152/296 (51%), Gaps = 4/296 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +P  A  LFH +  KN+VSWN+M++  A   L  +AL + R M      P+SVT
Sbjct: 282 MYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVT 341

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL +CA    L  GK +H+ I +  +  D ++ NAL DMYAKCG ++ A  VF  + 
Sbjct: 342 LVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMK 401

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D  SY  +IVG++       +L++FSEM  +G++ D V+ +G +SAC++   +++G+ 
Sbjct: 402 CKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRR 461

Query: 180 -IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLILGYGML 237
               ++   HL         ++D   R+G I  A    + +P V D++ W +L+    + 
Sbjct: 462 HFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACKIH 521

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
            +V+    + + + E     D  +YI +    S         K+   M+ +++K T
Sbjct: 522 AKVELGETVIQKLIEMEPERDG-AYILMSNIYSSANRWRDALKWRKAMKQNNIKKT 576



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 191/406 (47%), Gaps = 48/406 (11%)

Query: 17  NIAEKNIVS-WNAMVANFA-QNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL 74
           N   +N V  +NA++ + +  N        L R+M +    P++ TL  +L AC++ H  
Sbjct: 95  NFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAF 154

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVGY 133
               +IHA  I+ GL+ +LF+ N L   YA  G +   + VF+     D +S+  LI  Y
Sbjct: 155 IEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAY 214

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL---H 190
           S+    SE+++ F  M       D ++ +  +SAC+ L     GK+I    +  HL   H
Sbjct: 215 SKMGYPSEAIAAFFRMNCTA---DRMTLVVVLSACSQLGDFTLGKKILAY-MDHHLFDVH 270

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
           + +F+ N++LD Y + G+  LA ++F  +PVK+  SWN++I G    G    A+++F  M
Sbjct: 271 SDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRM 330

Query: 251 REDGVGYDPVSYIAILTACSHGGLVEKGK---KYFDE--MQAD----------------- 288
           +  G+  D V+ + +L +C++ G +E GK    Y D+  M+AD                 
Sbjct: 331 QTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSI 390

Query: 289 --------SVKPTEMH-YACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGAC 336
                   ++K  +++ Y  M+      G  + A+ +   +P   V PD      +L AC
Sbjct: 391 DQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSAC 450

Query: 337 RIYGNVELGAWAAE---HLFMLKPQHCGYYILLSNMYAEAGKWDEA 379
              G +E G    +    L+ L+PQ   +Y  + ++   AG   EA
Sbjct: 451 SHAGLLEEGRRHFQDMSRLYHLQPQ-TEHYGCMVDLLGRAGLISEA 495



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 169/397 (42%), Gaps = 76/397 (19%)

Query: 53  NEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKG--------------------LNFD 92
           +EFP  +    +L +C     +R  K+IHA II+                      L  D
Sbjct: 25  HEFPQLL----LLSSCKS---VREIKQIHASIIKANTTRSTTTLPIISLCTKITSLLQQD 77

Query: 93  LFLTNALTDMYAKCGCLNLA-QNVFNISFRDEVSYNILIVGYSQTSDC-SESLSLFSEMR 150
           + L +++ +++      N   QN   I       +N +I   S +++  +   SL+ +M 
Sbjct: 78  VHLADSIQNLWYASSLANFCHQNPVYI-------FNAIIQSLSTSNNTFTHIFSLYRQML 130

Query: 151 LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210
           L+G+  D  +    + AC+   A  +  +IH  +I+  L ++LFV N+++ FY  SG I+
Sbjct: 131 LIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIE 190

Query: 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
              K+FD  P  D  SW TLI  Y  +G    AI  F  M       D ++ + +L+ACS
Sbjct: 191 AVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRMNCTA---DRMTLVVVLSACS 247

Query: 271 HGGLVEKGKK---YFDEMQADSVKPT-------EMHYAC--------------------- 299
             G    GKK   Y D    D            +M+  C                     
Sbjct: 248 QLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSW 307

Query: 300 --MVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
             M+  L   GL ++A+ + + +    ++PD+     +L +C   G++ELG W   ++  
Sbjct: 308 NSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDK 367

Query: 355 LKPQHCGYYI-LLSNMYAEAGKWDEASKVRELMKSRE 390
              +  GY    L +MYA+ G  D+A  V + MK ++
Sbjct: 368 NHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKD 404


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 161/487 (33%), Positives = 250/487 (51%), Gaps = 78/487 (16%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  R  +A  LF  +  ++IVSWN MV+ +A NR  L A ++ + M +    PNSVT
Sbjct: 176 MYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVT 235

Query: 61  LTN-----------------------------------VLPACARGHFLRPGKEIHARII 85
            T+                                   VL  CA    +  GKEIH  ++
Sbjct: 236 WTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVV 295

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSE--- 141
           + G    LF+ NAL   Y K   +  A  VF  I  ++ VS+N LI  Y+++  C E   
Sbjct: 296 KGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYA 355

Query: 142 --------------------------------------SLSLFSEMRLLGMKHDVVSFMG 163
                                                 SL LF +M+L  +  + V+   
Sbjct: 356 AFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCVTISS 415

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
            +S CA LAA+  G+E+HG  IR  +  ++ V N +++ Y + G     + +FD +  +D
Sbjct: 416 VLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRD 475

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283
             SWN+LI GYGM G  + A+  F  M    +  D ++++AIL+ACSH GLV  G+  FD
Sbjct: 476 LISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGRNLFD 535

Query: 284 EMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
           +M  +  ++P   HYACMVDLLGRAGL+++A  +++N+P+EP+  +WGALL +CR+Y ++
Sbjct: 536 QMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLNSCRMYKDM 595

Query: 343 ELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQT 402
           ++    A  +  LK +  G ++LLSN+YA  G+WD++++VR   +++  KK PG SW++ 
Sbjct: 596 DIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDSARVRVSARTKGLKKIPGQSWIEV 655

Query: 403 RDEVQDF 409
           R +V  F
Sbjct: 656 RKKVYTF 662



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 112/222 (50%), Gaps = 4/222 (1%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI----SFRDEVSYNIL 129
           L+  +++H++++    +   FL   L  +YA+   L+ A+ VF+     S    + +N +
Sbjct: 44  LQQARQLHSQLVLTTAHRLPFLAARLIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSI 103

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I           +L L+ EMR LG   D  +    I AC++L +    + +H   ++   
Sbjct: 104 IRANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGF 163

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             HL V N ++  Y + GR++ A ++FD + V+   SWNT++ GY +  +   A  +F+ 
Sbjct: 164 RNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKR 223

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
           M  +G+  + V++ ++L++ +  GL ++  + F  M+   ++
Sbjct: 224 MELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIE 265


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 146/416 (35%), Positives = 230/416 (55%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +      A  +F  +  +N V+W  ++  + Q +    AL+L   M +     +   
Sbjct: 232 MYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFV 291

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            + VL  C        G++IH+ I++ G   ++ +   L D Y KCG +  A   F  IS
Sbjct: 292 FSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRIS 351

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             ++VS++ LI G+SQ+    + + +F+ +R  G+  +   +     ACA  A +  G +
Sbjct: 352 EPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQ 411

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            HG  I++ L ++L+  ++++  Y++ GR+D A + F+ +   D+ +W  +I GY   G 
Sbjct: 412 AHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGN 471

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+  F  M+  GV  + V++IA+LTACSH GLV + K+Y   M  D  VKPT  HY 
Sbjct: 472 AAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYD 531

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+D   RAGL+++A++LI  +P EPDA  W +LLG C  + +++LG  AAE+LF L P 
Sbjct: 532 CMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPG 591

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               YILL N+Y+  GKW+EA  VR+LM  RE KK   CSW+  + +V  FVV DR
Sbjct: 592 DTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDR 647



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 192/388 (49%), Gaps = 17/388 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY       +   +F  +  KN+VSW  +++ +A+N    KA++L  +M      PNS  
Sbjct: 131 MYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAV 190

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L +C    FL  GK+IH+ +IR  LN ++ +  A+ +MY +CG L  A+ VF+ + 
Sbjct: 191 YMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMD 250

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ V++  L+VGY+Q      +L LF+ M + G++ D   F   +  C  L     G++
Sbjct: 251 AQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQ 310

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   ++    + + V   ++DFY + G I+ A + F  +   +  SW+ LI G+   G 
Sbjct: 311 IHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGR 370

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY-- 297
           ++  I +F ++R +GV  +   Y ++  AC+    +  G     +   D++K   + Y  
Sbjct: 371 LEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGS----QAHGDAIKRGLVSYLY 426

Query: 298 --ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV--ELGAWAAEHLF 353
             + MV +  + G ++ A +  +++  EPDA  W A++     +GN    LG +     +
Sbjct: 427 GESAMVTMYSKCGRLDYARRAFESID-EPDAVAWTAIISGYAYHGNAAEALGFFRRMQSY 485

Query: 354 MLKPQHCGYYILL-----SNMYAEAGKW 376
            ++P    +  +L     S + AEA ++
Sbjct: 486 GVRPNAVTFIAVLTACSHSGLVAEAKQY 513



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 170/366 (46%), Gaps = 40/366 (10%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +  AC +   L  G+ IH R+ R   N    + N L  MY  CG     Q VF+ +  ++
Sbjct: 93  LFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKN 152

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            VS+ I+I  Y++  +  +++ LFS+M+  G++ +   +M  + +C   + ++ GK+IH 
Sbjct: 153 LVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHS 212

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             IR  L+ ++ V  +I + Y R G ++ A  +FD +  +++ +W  L++GY    +++ 
Sbjct: 213 HVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEV 272

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKK----------- 280
           A+ LF  M  +GV  D   +  +L  C            H  +V+ G +           
Sbjct: 273 ALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVD 332

Query: 281 -YFDEMQADSV--------KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP---DANI 328
            Y      +S         +P ++ ++ ++    ++G +ED +K+  +L  E    ++ I
Sbjct: 333 FYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFI 392

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI---LLSNMYAEAGKWDEASKVREL 385
           + ++  AC    N+ +G+ A  H   +K     Y      +  MY++ G+ D A +  E 
Sbjct: 393 YTSVFQACAAQANLNMGSQA--HGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFES 450

Query: 386 MKSREA 391
           +   +A
Sbjct: 451 IDEPDA 456


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 145/421 (34%), Positives = 240/421 (57%), Gaps = 8/421 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A   F  +  +++V WNAMV  +AQ       L+  R M   +  P+  T+
Sbjct: 181 YLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTV 240

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
           T VL   A    L  G+ IH   ++ G +  + ++N+L DMY KC C+  A  +F +   
Sbjct: 241 TGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMRE 300

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D  S+N ++  + Q  D   +L L   M   G++ D+V+    + AC++LAA+  G+EI
Sbjct: 301 KDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREI 360

Query: 181 HGVTIRKHLHTH------LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           HG  I   L         + + N+++D Y + G +  A+ +F+ +  KD ASWN +I+GY
Sbjct: 361 HGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGY 420

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
           GM G  + A+ +F  M E  +  D V+++ +L+ACSH G V +G+ +  +M++   V PT
Sbjct: 421 GMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPT 480

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY C++D+LGRAG +++A +L   +P+E +  +W ALL ACR++ +  L   AA+ +F
Sbjct: 481 IEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVF 540

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            L+P+HCG Y+L+SN+Y   G+++E  +VR  M+ +  +K PGCSW++ ++ V  FV  D
Sbjct: 541 ELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSAD 600

Query: 414 R 414
           R
Sbjct: 601 R 601



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 128/240 (53%), Gaps = 9/240 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  + EK+I SWN++V+   Q       L+L+  M      P+ VT
Sbjct: 281 MYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVT 340

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF------DLFLTNALTDMYAKCGCLNLAQN 114
           +T VLPAC+    L  G+EIH  +I  GL        D+ L NA+ DMYAKCG +  A  
Sbjct: 341 VTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHL 400

Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           VF  +S +D  S+NI+I+GY      +E+L +FS M  + +K D V+F+G +SAC++   
Sbjct: 401 VFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGF 460

Query: 174 IKQGKEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
           + QG+        K+ +   +     ++D   R+G++D A ++   +P++ +   W  L+
Sbjct: 461 VSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALL 520



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNV 115
           N  T    L A A    L  GKEIH+ ++  G LN  L +T +L +MY+KC  +N A ++
Sbjct: 36  NLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSIT-SLINMYSKCNQMNFALSI 94

Query: 116 FNISFRD--EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           F+    +    ++N +I G+       E    + +MR  G+  D  +F  AI AC ++  
Sbjct: 95  FSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLE 154

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           IK+   IHG+  +  L   +F+ +++++ Y + G ++ A   F+ LP++D   WN ++ G
Sbjct: 155 IKK---IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNG 211

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK---KYFDEMQADSV 290
           Y  +G+ +  +  F  M ++ V     +   +L+  +  G +  G+    +  +M  DS 
Sbjct: 212 YAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSG 271

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                    ++D+ G+   +EDA+++ + +  E D   W +++
Sbjct: 272 VAVS---NSLIDMYGKCKCIEDALEIFEMMR-EKDIFSWNSIV 310



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 90/202 (44%), Gaps = 5/202 (2%)

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203
           S+ + ++     +++ + + ++ A A+   + +GKEIH   +            S+++ Y
Sbjct: 23  SISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMY 82

Query: 204 TRSGRIDLANKIF-DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           ++  +++ A  IF D     +  ++N +I G+   G  +     ++ MR +GV  D  ++
Sbjct: 83  SKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTF 142

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
              + AC     V + KK    +    ++      + +V+   + GLME A    + LP+
Sbjct: 143 PCAIKACLD---VLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPI 199

Query: 323 EPDANIWGALLGACRIYGNVEL 344
             D  +W A++      G  E+
Sbjct: 200 R-DVVLWNAMVNGYAQIGQFEM 220


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 245/451 (54%), Gaps = 38/451 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQ----------------NRLELK--- 41
           MY K  +   A  LF  I E++ VSWN+M++ +A                   +EL    
Sbjct: 245 MYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIII 304

Query: 42  ----------------ALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
                           AL+L+ +M       +SV L   L AC+     + GKEIH+  I
Sbjct: 305 WNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAI 364

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSESLS 144
           R        + NAL  MY++C  L  A  +F +   +  +++N +I G        E+  
Sbjct: 365 RSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASF 424

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG-VTIRKHLHTHLFVANSILDFY 203
           L  EM L G++ + V+    +  CA +A ++ GKE H  +T R+    HL + N+++D Y
Sbjct: 425 LLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMY 484

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
            RSG++  A ++FD L  +D  ++ ++I GYGM GE   A+ LFE M    +  D ++ I
Sbjct: 485 ARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMI 544

Query: 264 AILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
           A+L+ACSH GLV +G+  F++M++   + P   H+ACM DL GRAGL+  A ++I+N+P 
Sbjct: 545 AVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPY 604

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382
           +P   +W  L+GACRI+ N E+G WAAE L  +KP++ GYY+L++NMYA AG W++ +KV
Sbjct: 605 KPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKV 664

Query: 383 RELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           R  M+    +K PGC+WV        F+V+D
Sbjct: 665 RIFMRDLGVRKAPGCAWVDVGTGFSPFLVDD 695



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 190/445 (42%), Gaps = 78/445 (17%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           WN +++++ +N    KAL   ++M      P++ T  +VL AC     L  GKE+H  I 
Sbjct: 169 WNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESIN 228

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV------------- 131
              + + L + NAL  MY KCG + +A+++F+ I  RD VS+N +I              
Sbjct: 229 ASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFE 288

Query: 132 ----------------------GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA 169
                                 GY +T +   +L L S+MR  G   D V+ +  + AC+
Sbjct: 289 LFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACS 348

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
           ++   K GKEIH   IR        V N+++  Y+R   +  A  +F  +  K   +WN+
Sbjct: 349 HIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNS 408

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY-------- 281
           +I G   +   + A  L   M   G+  + V+  ++L  C+    ++ GK++        
Sbjct: 409 IISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRRE 468

Query: 282 -----------FDEMQADSVKPTE-------------MHYACMVDLLGRAGLMEDAVKLI 317
                        +M A S K  E             M Y  M+   G  G  + A+KL 
Sbjct: 469 DFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLF 528

Query: 318 K---NLPVEPDANIWGALLGACRIYGNVELGAWAAEH---LFMLKPQHCGYYILLSNMYA 371
           +   N  ++PD     A+L AC   G V  G    E    L+ L P H  ++  +++++ 
Sbjct: 529 EEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTP-HLEHFACMTDLFG 587

Query: 372 EAGKWDEASKVRELMKSREAKKNPG 396
            AG  ++A   +E++++   K  P 
Sbjct: 588 RAGLLNKA---KEIIRNMPYKPTPA 609



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 92/404 (22%), Positives = 163/404 (40%), Gaps = 76/404 (18%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           ++++L +C     L  G+++H  II  G      L   L   Y+    L  A  +  N +
Sbjct: 103 ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSN 162

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
                 +N+LI  Y +   C ++LS + +M   G++ D  ++   + AC     +  GKE
Sbjct: 163 ILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKE 222

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H       +   L V N+++  Y + G++ +A  +FD +P +D+ SWN++I  Y  +G 
Sbjct: 223 VHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGM 282

Query: 240 VDTAINLF-----------------------------------EAMREDGVGYDPVSYIA 264
            + A  LF                                     MR+ G   D V+ I 
Sbjct: 283 WNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALII 342

Query: 265 ILTACSHGGLVEKGKKY--------FDEMQADSVKPTEMHYAC--------MVDLLGRAG 308
            L ACSH G  + GK+         F E+         M+  C        +  L+    
Sbjct: 343 GLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKS 402

Query: 309 LM---------------EDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAE 350
           L+               E+A  L++ +    +EP+     ++L  C    N++ G     
Sbjct: 403 LITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHG--KEF 460

Query: 351 HLFMLKPQHCGYYILLSN----MYAEAGKWDEASKVRELMKSRE 390
           H +M + +    ++LL N    MYA +GK  EA +V +++  R+
Sbjct: 461 HCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERD 504



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 108/251 (43%), Gaps = 15/251 (5%)

Query: 104 AKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS--- 160
           A C  L  AQ  F  +  D    + L+    + +     L  F  + L+ +     S   
Sbjct: 41  ASCNALESAQETF--TSVDASMIDSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDL 98

Query: 161 ----FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
                   +S+C ++ ++ +G+++HG  I      H  +   ++ FY+    +  A+ I 
Sbjct: 99  IVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVIT 158

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
           +   +     WN LI  Y   G    A++ ++ M + G+  D  +Y ++L AC     + 
Sbjct: 159 ENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLG 218

Query: 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
            GK+  + + A  +K + + +  ++ + G+ G +  A  L   +P E DA  W +++   
Sbjct: 219 FGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIP-ERDAVSWNSMIS-- 275

Query: 337 RIYGNVELGAW 347
            +Y +  +G W
Sbjct: 276 -VYAS--MGMW 283


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 143/436 (32%), Positives = 245/436 (56%), Gaps = 33/436 (7%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           AS +F  I   N+  +NAM+   + ++   +A     +       P+++T   ++ +C +
Sbjct: 72  ASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTK 131

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA-------------------------- 104
            H +  G + H  II+ G   D+++ N+L  MYA                          
Sbjct: 132 LHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSM 191

Query: 105 -----KCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
                KCG +  A+ +F+ +  ++ V+++ +I GY+Q +   +++ LF  ++  G++ + 
Sbjct: 192 IRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANE 251

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
              +  IS+CA+L A++ G+  H   ++  +  +L +  +++D Y R G ID A  +F+ 
Sbjct: 252 TVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFED 311

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           LP +D+ SW  LI G  M G  + ++  F  M E G+    +++ A+L+ACSHGGLVE+G
Sbjct: 312 LPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERG 371

Query: 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
            + F+ M+ D  V+P   HY CMVDLLGRAG +E+A + +  +PV+P+A +WGALLGACR
Sbjct: 372 FQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACR 431

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           I+ N E+G    + L  L PQH GYY+LLSN+YA A +W++ +++R++MK++  KK PG 
Sbjct: 432 IHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGH 491

Query: 398 SWVQTRDEVQDFVVND 413
           S ++    V  F + D
Sbjct: 492 SLIELDGRVHKFTIGD 507



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 118/265 (44%), Gaps = 34/265 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANF--------------------------- 33
           MYA       A+ +F  +   ++VSW +M+  F                           
Sbjct: 163 MYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTM 222

Query: 34  ----AQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
               AQN    KA++L + +       N   + +V+ +CA    L  G+  H  +++ G+
Sbjct: 223 ISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGM 282

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
             +L L  AL DMYA+CG ++ A  VF ++  RD +S+  LI G +       SL  F+ 
Sbjct: 283 TLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFAT 342

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH-LHTHLFVANSILDFYTRSG 207
           M   G+    ++F   +SAC++   +++G +I     R H +   L     ++D   R+G
Sbjct: 343 MVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAG 402

Query: 208 RIDLANKIFDCLPVKDSAS-WNTLI 231
           +++ A +    +PVK +A  W  L+
Sbjct: 403 KLEEAERFVLKMPVKPNAPVWGALL 427



 Score = 42.0 bits (97), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 45/237 (18%), Positives = 104/237 (43%), Gaps = 15/237 (6%)

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF----YTRSGRIDLANKIFDCL 219
           ++  C++L  +K    IH   IR H+   +F A+ ++ F     + +  ID A++IF  +
Sbjct: 23  SLETCSDLTHLKI---IHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQI 79

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
              +   +N +I G+      D A + +   +  G+  D +++  ++ +C+    +  G 
Sbjct: 80  QNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGS 139

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
           +    +     +        +V +    G  E A  + + +    D   W +++      
Sbjct: 140 QAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRM-YYVDVVSWTSMIRGFNKC 198

Query: 340 GNVELGAWAAEHLFMLKPQH--CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394
           G+VE    +A  LF   P+     +  ++S  YA+   +D+A ++ ++++S+  + N
Sbjct: 199 GDVE----SARKLFDQMPEKNLVTWSTMISG-YAQNNHFDKAVELFKVLQSQGVRAN 250


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 163/411 (39%), Positives = 241/411 (58%), Gaps = 2/411 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K      A  +F      ++    AM++ +  + L + A+   R +      PNS+T
Sbjct: 391 IYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLT 450

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VLPACA    L+ GKE+H  I++K L   + + +A+TDMYAKCG L+LA   F  +S
Sbjct: 451 MASVLPACAALAALKLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMS 510

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D + +N +I  +SQ      ++ LF +M + G K D VS   A+S+ ANL A+  GKE
Sbjct: 511 ETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKE 570

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  IR    +  FVA++++D Y++ G++ LA  +F+ +  K+  SWN++I  YG  G 
Sbjct: 571 MHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGC 630

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HYA 298
               ++LF  M   GV  D V+++ I++AC H GLV +G  YF  M  +      M HYA
Sbjct: 631 ARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYA 690

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDL GRAG + +A   IK++P  PDA +WG LLGACR++GNVEL   A+ HL  L P+
Sbjct: 691 CMVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPK 750

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
           + GYY+LLSN++A+AG+W    KVR LMK +  +K PG SW+        F
Sbjct: 751 NSGYYVLLSNVHADAGEWGSVLKVRRLMKEKGVQKIPGYSWIDVNGGTHMF 801



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 172/346 (49%), Gaps = 4/346 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YA +    +A  +F  + +++ + WN M+  + ++     A+     M       NSVT
Sbjct: 189 LYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVT 248

Query: 61  LTNVLPACA-RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
            T +L  CA RG F   G ++H  +I  G  FD  + N L  MY+KCG L  A+ +FN +
Sbjct: 249 YTCILSICATRGKFCL-GTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTM 307

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              D V++N LI GY Q     E+  LF+ M   G+K D V+F   + +     +++  K
Sbjct: 308 PQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCK 367

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+H   +R  +   +++ ++++D Y + G +++A KIF    + D A    +I GY + G
Sbjct: 368 EVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHG 427

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
               AIN F  + ++G+  + ++  ++L AC+    ++ GK+   ++    ++      +
Sbjct: 428 LNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQLENIVNVGS 487

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344
            + D+  + G ++ A +  + +  E D+  W +++ +    G  E+
Sbjct: 488 AITDMYAKCGRLDLAYEFFRRMS-ETDSICWNSMISSFSQNGKPEM 532



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 146/320 (45%), Gaps = 1/320 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y    R ++   LF  +   N + WN M+           AL    +M   N  P+  T
Sbjct: 88  LYVLCGRISDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYT 147

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V+ AC   + +     +H      G + DLF+ +AL  +YA  G +  A+ VF+ + 
Sbjct: 148 FPYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELP 207

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD + +N+++ GY ++ D + ++  F  MR      + V++   +S CA       G +
Sbjct: 208 QRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQ 267

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+ I         VAN+++  Y++ G +  A K+F+ +P  D+ +WN LI GY   G 
Sbjct: 268 VHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGF 327

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D A  LF AM   GV  D V++ + L +    G +   K+    +    V       + 
Sbjct: 328 TDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSA 387

Query: 300 MVDLLGRAGLMEDAVKLIKN 319
           ++D+  + G +E A K+ + 
Sbjct: 388 LIDIYFKGGDVEMARKIFQQ 407



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 123/279 (44%), Gaps = 2/279 (0%)

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV-F 116
           +  L ++  AC+    ++  +++H +II  G++    L++ +  +Y  CG ++   N+ F
Sbjct: 44  TTQLESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFF 103

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +   + + +N +I G         +L  + +M    +  D  +F   I AC  L  +  
Sbjct: 104 GLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPL 163

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
              +H        H  LFV ++++  Y  +G I  A ++FD LP +D+  WN ++ GY  
Sbjct: 164 CMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVK 223

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G+ + A+  F  MR      + V+Y  IL+ C+  G    G +    +     +     
Sbjct: 224 SGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQV 283

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
              +V +  + G + DA KL   +P + D   W  L+  
Sbjct: 284 ANTLVAMYSKCGNLFDARKLFNTMP-QTDTVTWNGLIAG 321


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 154/442 (34%), Positives = 254/442 (57%), Gaps = 41/442 (9%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACA 69
           A   F  + E+++VSWNAM++ + Q+  + +AL +  +M + +   P+  TL + L ACA
Sbjct: 230 AQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACA 289

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLF--LTNALTDMYAKCGCLNLAQNVFNISF------- 120
               L+ GK+IHA IIR    FD F  + NAL  MY+K G + +AQ +   S        
Sbjct: 290 NLENLKLGKQIHAHIIRT--EFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVI 347

Query: 121 ---------------------------RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
                                      RD V++  +IVGY Q     +++ LF  M   G
Sbjct: 348 AFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEG 407

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
            K +  +    +S  ++LA++  G++IH    R    + + V+N+++  Y +SG I+ A 
Sbjct: 408 PKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDAR 467

Query: 214 KIFDCLPVK-DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
            +F+ +  K D+ +W ++I+     G  + A+ LFE M E+G+  D ++Y+ +L+AC+H 
Sbjct: 468 WVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHV 527

Query: 273 GLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
           GLVE+G+ Y++ MQ A  + PT  HYACM+DL GRAGL+++A   I+N+P+EPD   WG+
Sbjct: 528 GLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGS 587

Query: 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
           LL +C+++ NVEL   AAE L +++P++ G Y  L+N+Y+  G+W+ A+ +R+ MK +  
Sbjct: 588 LLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGV 647

Query: 392 KKNPGCSWVQTRDEVQDFVVND 413
           KK+ G SWVQ +++V  F V+D
Sbjct: 648 KKDQGFSWVQIKNKVHIFGVDD 669



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 163/334 (48%), Gaps = 39/334 (11%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK  R  EA  +F  + E + VSW AM+  + Q      A+ + REM   +  P   TL
Sbjct: 89  YAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTL 148

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---- 117
           TNVL +CA    L  G+++H+ +++ GL+  + + N+L +MYAK G    A+ VF+    
Sbjct: 149 TNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKL 208

Query: 118 -----------------------ISF-----RDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                  + F     RD VS+N +I GY+Q     E+L +FS+M
Sbjct: 209 KSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKM 268

Query: 150 RL-LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
            +    K D  +   A+SACANL  +K GK+IH   IR    T   V N+++  Y++SG 
Sbjct: 269 LMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGG 328

Query: 209 IDLANKIFDCLPVK--DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           +++A KI +   +   D  ++  L+ GY  LG+++ A  +F+++R      D V++ A++
Sbjct: 329 VEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVR----DVVAWTAMI 384

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
                 G  +   + F  M  +  KP     A M
Sbjct: 385 VGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATM 418



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 125/235 (53%), Gaps = 6/235 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A  +F ++  +++V+W AM+  + QN     A++L R M      PN+ TL
Sbjct: 356 YVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTL 415

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF- 120
             +L   +    L  G++IHA   R G    + ++NAL  MYAK G +N A+ VFN+   
Sbjct: 416 ATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHW 475

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +++  +I+  +Q     E+L+LF  M   G+K D ++++G +SAC ++  ++QG+ 
Sbjct: 476 KRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRS 535

Query: 180 IHGVTIRKH--LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
            + +    H  + T    A  ++D + R+G +  A+   + +P++ D  +W +L+
Sbjct: 536 YYNLMQNAHKIIPTPSHYA-CMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLL 589



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 150/341 (43%), Gaps = 68/341 (19%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           GK IHARII+ GL+  +FL N L + YAK G +  A  VF+ +  +   S+NI++ GY++
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 136 TSDCSESLSLFSEM----------------------RLLGMKHDVVS---------FMGA 164
                E+  +F EM                        +GM  ++VS             
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           +++CA +  +  G+++H   ++  L +++ VANS+L+ Y +SG    A  +FD + +K +
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKST 211

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
           +SWNT+I  +   G VD A   FE M E     D VS+ A+++  +  G   +    F +
Sbjct: 212 SSWNTMISSHMQSGLVDLAQVQFEQMIER----DVVSWNAMISGYNQHGFDREALDIFSK 267

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344
           M  DS                                 +PD     + L AC    N++L
Sbjct: 268 MLMDSSS-------------------------------KPDKFTLASALSACANLENLKL 296

Query: 345 GAWAAEHLFMLKPQHCGYY-ILLSNMYAEAGKWDEASKVRE 384
           G     H+   +    G     L +MY+++G  + A K+ E
Sbjct: 297 GKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIE 337


>gi|297741017|emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 153/420 (36%), Positives = 239/420 (56%), Gaps = 7/420 (1%)

Query: 1   MYAKSSRPAEASYLFHNI----AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP 56
           +YA      EA  LF ++     E NI+ WN +   + +      AL+L+ +M       
Sbjct: 231 LYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHL 290

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           +SV L   L AC+     + GKEIH+  IR        + NAL  MY++C  L  A  +F
Sbjct: 291 DSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLF 350

Query: 117 NI-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
            +   +  +++N +I G        E+  L  EM L G++ + V+    +  CA +A ++
Sbjct: 351 QLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQ 410

Query: 176 QGKEIHG-VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
            GKE H  +T R+    HL + N+++D Y RSG++  A ++FD L  +D  ++ ++I GY
Sbjct: 411 HGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGY 470

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPT 293
           GM GE   A+ LFE M    +  D ++ IA+L+ACSH GLV +G+  F++M++   + P 
Sbjct: 471 GMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPH 530

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             H+ACM DL GRAGL+  A ++I+N+P +P   +W  L+GACRI+ N E+G WAAE L 
Sbjct: 531 LEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLL 590

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            +KP++ GYY+L++NMYA AG W++ +KVR  M+    +K PGC+WV        F+V+D
Sbjct: 591 EMKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAPGCAWVDVGTGFSPFLVDD 650



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 179/414 (43%), Gaps = 61/414 (14%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           WN +++++ +N    KAL   ++M      P++ T  +VL AC     L  GKE+H  I 
Sbjct: 169 WNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESI- 227

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIV-----GYSQTSDCS 140
                      NA   +YA  G  N A  +F   + +++  NI+I      GY +T +  
Sbjct: 228 -----------NA--SLYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYK 274

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
            +L L S+MR  G   D V+ +  + AC+++   K GKEIH   IR        V N+++
Sbjct: 275 GALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALI 334

Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
             Y+R   +  A  +F  +  K   +WN++I G   +   + A  L   M   G+  + V
Sbjct: 335 TMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYV 394

Query: 261 SYIAILTACSHGGLVEKGKKY-------------------FDEMQADSVKPTE------- 294
           +  ++L  C+    ++ GK++                     +M A S K  E       
Sbjct: 395 TIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDM 454

Query: 295 ------MHYACMVDLLGRAGLMEDAVKLIK---NLPVEPDANIWGALLGACRIYGNVELG 345
                 M Y  M+   G  G  + A+KL +   N  ++PD     A+L AC   G V  G
Sbjct: 455 LGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQG 514

Query: 346 AWAAEH---LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPG 396
               E    L+ L P H  ++  +++++  AG  ++A   +E++++   K  P 
Sbjct: 515 QLLFEKMRSLYGLTP-HLEHFACMTDLFGRAGLLNKA---KEIIRNMPYKPTPA 564



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 104 AKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS--- 160
           A C  L  AQ  F  +  D    + L+    + +     L  F  + L+ +     S   
Sbjct: 41  ASCNALESAQETF--TSVDASMIDSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDL 98

Query: 161 ----FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
                   +S+C ++ ++ +G+++HG  I      H  +   ++ FY+    +  A+ I 
Sbjct: 99  IVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVIT 158

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
           +   +     WN LI  Y   G    A++ ++ M + G+  D  +Y ++L AC     + 
Sbjct: 159 ENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLG 218

Query: 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALL 333
            GK              E+H +    L    G+  +A +L  ++    +E +  IW  + 
Sbjct: 219 FGK--------------EVHESINASLYASMGMWNEAFELFGSMWAEDIELNIIIWNTIA 264

Query: 334 GACRIYGN 341
           G     GN
Sbjct: 265 GGYLRTGN 272


>gi|225438700|ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
          Length = 1008

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 144/406 (35%), Positives = 240/406 (59%), Gaps = 12/406 (2%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVA----NFAQNRLELKALQLVREMPIHNEFP 56
            MY          +LF  +  ++IVSWNA++     ++ QN +     Q++RE     + P
Sbjct: 603  MYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMASFCQMIRE----GQKP 658

Query: 57   NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
            N VTL N+LP+C     L  GK IHA  +R G+  +  +  +L  MYA+   +N    +F
Sbjct: 659  NYVTLLNLLPSCRT---LLQGKSIHAFAVRTGVIVETPIITSLISMYARFENINSFIFLF 715

Query: 117  NISFRDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
             +  +++++ +N ++  Y QT +  ES++ F E+    ++ D ++F+  ISAC  L+++ 
Sbjct: 716  EMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITFLSLISACVQLSSLN 775

Query: 176  QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
                +    I+K    H+ ++N+++D + R G I +A KIF+ L  KD+ SW+T+I GYG
Sbjct: 776  LSNSVMAYVIQKGFDKHIVISNALIDLFARCGNISIAKKIFEGLSSKDAVSWSTMINGYG 835

Query: 236  MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
            + G+ + A+ L   MR  G+  D ++Y ++L+ACSHGG +++G   F+ M  + V     
Sbjct: 836  LHGDSEAALALLSQMRLSGMKPDGITYASVLSACSHGGFIDQGWMIFNSMVEEGVPRRME 895

Query: 296  HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
            HYACMVDLLGR G + +A   ++ LP +P  ++  +LLGAC I+GNV+LG   +  LF L
Sbjct: 896  HYACMVDLLGRTGQLNEAYDFVEKLPCKPSVSLLESLLGACIIHGNVKLGEKISSLLFEL 955

Query: 356  KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQ 401
             P++ G Y++L N+YA AG+W +A++VR  M+ R+ +K PG S V+
Sbjct: 956  DPKNSGSYVMLYNIYAAAGRWMDANRVRSDMEERQLRKIPGFSLVE 1001



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 179/344 (52%), Gaps = 18/344 (5%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK+ R  +A  +   I++ ++V+WNA+++ ++ N  + +  +++R++      PN  T 
Sbjct: 200 YAKTGRMVKARLVLDKISQPDLVTWNALISGYSLNGFDKEVFEVLRQINEMGLKPNVSTF 259

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF- 120
            +++P C R   L  GK IH  +++ G + D FLT AL  MYA  G L +A+++F+ +  
Sbjct: 260 ASIIPLCTRMKCLDIGKSIHGFVVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAE 319

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ V +N +I  Y+Q    SE+  +F +M    M+ +VV+F+  I  C N A    GK +
Sbjct: 320 KNVVIWNSMISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWYGKSL 379

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++  L + L VA ++L  Y + G ++ A+ IF  +P ++  SWN++I GYG  G  
Sbjct: 380 HAHVMKYRLDSQLSVATALLSMYAKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLW 439

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK--------KYFDEMQADSVKP 292
           + +++ F  M+ +G   D +S + IL+ACS    +  GK        K FD     S   
Sbjct: 440 EASMDAFCDMQFEGFDPDAISIVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNISNAL 499

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
              +  C        G +  + KL + +P+  +A  W  L+  C
Sbjct: 500 LAFYSDC--------GKLSSSFKLFQKMPLR-NAISWNTLISGC 534



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 151/270 (55%), Gaps = 1/270 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA       A  LF + AEKN+V WN+M++ +AQN+   +A ++ ++M   N  PN VT
Sbjct: 300 MYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQNQKSSEAFKMFQQMLKANMQPNVVT 359

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +++P C        GK +HA +++  L+  L +  AL  MYAK G LN A  +F  + 
Sbjct: 360 FVSIIPCCENSANFWYGKSLHAHVMKYRLDSQLSVATALLSMYAKLGDLNSADFIFYQMP 419

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ +S+N +I GY        S+  F +M+  G   D +S +  +SAC+ L AI  GK 
Sbjct: 420 RRNLLSWNSMISGYGHNGLWEASMDAFCDMQFEGFDPDAISIVNILSACSKLEAILLGKA 479

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H  + RK   ++L ++N++L FY+  G++  + K+F  +P++++ SWNTLI G    G+
Sbjct: 480 AHAFSFRKEFDSNLNISNALLAFYSDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHNGD 539

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTAC 269
              A+ L   M+++ +  D V+ I+I+  C
Sbjct: 540 TKKAVALLHKMQQEKMELDLVTLISIIPIC 569



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 138/270 (51%), Gaps = 1/270 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A ++F+ +  +N++SWN+M++ +  N L   ++    +M      P++++
Sbjct: 401 MYAKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDMQFEGFDPDAIS 460

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + N+L AC++   +  GK  HA   RK  + +L ++NAL   Y+ CG L+ +  +F  + 
Sbjct: 461 IVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSDCGKLSSSFKLFQKMP 520

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ +S+N LI G     D  ++++L  +M+   M+ D+V+ +  I  C     + QG  
Sbjct: 521 LRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVAENLIQGMT 580

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  I+      + + N+++  Y   G I+    +F+ +P +   SWN LI GY     
Sbjct: 581 LHGYAIKTGFACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYL 640

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTAC 269
            +  +  F  M  +G   + V+ + +L +C
Sbjct: 641 QNEVMASFCQMIREGQKPNYVTLLNLLPSC 670



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 87/195 (44%), Gaps = 1/195 (0%)

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
           + L ++ + R+LG   D  +F   I AC  L A+   + +H + +R     +L +  +++
Sbjct: 138 DVLCVYLKCRVLGCPSDDFTFPFVIKACTALGAVWIAEGVHCIVLRTSFEENLVIQTALV 197

Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
           DFY ++GR+  A  + D +   D  +WN LI GY + G       +   + E G+  +  
Sbjct: 198 DFYAKTGRMVKARLVLDKISQPDLVTWNALISGYSLNGFDKEVFEVLRQINEMGLKPNVS 257

Query: 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           ++ +I+  C+    ++ GK     +        E     ++ +    G +  A  L  + 
Sbjct: 258 TFASIIPLCTRMKCLDIGKSIHGFVVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDS- 316

Query: 321 PVEPDANIWGALLGA 335
             E +  IW +++ A
Sbjct: 317 AAEKNVVIWNSMISA 331


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 153/417 (36%), Positives = 242/417 (58%), Gaps = 9/417 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN-RLELKALQLVR-EMPIHNEFPNSV 59
           Y K     +A  LF ++  K++VSWN++++ F++   + L A   ++ EM +    PN V
Sbjct: 84  YNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHMSLTAFYTMKFEMSVK---PNEV 140

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T+ +++ AC+    L  GK IH   I+ G   ++ + N+L +MY K G L  A  +F  I
Sbjct: 141 TILSMISACSGA--LDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAI 198

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              + VS+N +I          E +  F++MR LG++ D  + +  + AC +L   K  +
Sbjct: 199 PDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAE 258

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IHG+         + +A ++LD Y + GR+  +  +F  +   D  +W  ++ GY   G
Sbjct: 259 SIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHG 318

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               AI LFE+M   G+  D V++  +L+ACSH GLV +GK YF+ M +   ++P   HY
Sbjct: 319 LGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHY 378

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +CMVDLLGR GL+ DA ++I+N+P+EP+A +WGALLGACR++GN+ELG   AEHL  ++P
Sbjct: 379 SCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEP 438

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
                YI+LSNMY+ +  W +A+KVR L+K R  K+ PG S ++  ++   F V DR
Sbjct: 439 LDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDR 495



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 169/365 (46%), Gaps = 52/365 (14%)

Query: 24  VSWNAMVAN--FAQNRLEL-----KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRP 76
           + WN+ +    F Q+R +      ++  LVR+       P ++ ++ +L A      +  
Sbjct: 3   LRWNSSILYNFFIQSRTQYPLLLHRSFHLVRQCAT----PEAI-VSALLIAVNSCPSISN 57

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQ 135
            +EIHAR+ +  L  D F+ + L   Y K G    A  +F ++  +D VS+N LI G+S+
Sbjct: 58  CREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSR 117

Query: 136 TSDCSESLSLFSEMRL-LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
                 SL+ F  M+  + +K + V+ +  ISAC+   A+  GK IHG  I+      + 
Sbjct: 118 C--LHMSLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGKYIHGFGIKVGGTLEVK 173

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           VANS+++ Y +SG +  A ++F+ +P  ++ SWN++I      G     I+ F  MR  G
Sbjct: 174 VANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLG 233

Query: 255 VGYDPVSYIAILTACSH---GGLVEK----------GKKY------------FDEMQADS 289
           +  D  + +A+L AC H   G L E           G K                + A  
Sbjct: 234 IEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASY 293

Query: 290 VKPTEMHYACMVD----LLGRA--GLMEDAVKLIKNLP---VEPDANIWGALLGACRIYG 340
              TE+ +A  V     L G A  GL  +A+KL +++    +EPD   +  LL AC   G
Sbjct: 294 GVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSG 353

Query: 341 NVELG 345
            V  G
Sbjct: 354 LVNEG 358



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 125/274 (45%), Gaps = 16/274 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY KS     A  LF  I + N VSWN+++A    N    + +    +M       +  T
Sbjct: 181 MYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGT 240

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  +L AC      +  + IH  +   G    + +  AL D YAK G L+ +  VF  + 
Sbjct: 241 ILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVG 300

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK- 178
           F D V++  ++ GY+      E++ LF  M   G++ D V+F   +SAC++   + +GK 
Sbjct: 301 FADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKS 360

Query: 179 ------EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
                 E++G+  R   ++       ++D   R G ++ A ++   +P++ +A  W  L+
Sbjct: 361 YFNVMSEVYGIEPRVDHYS------CMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALL 414

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
               + G ++    + E +  +    DP +YI +
Sbjct: 415 GACRVHGNIELGKEVAEHLI-NMEPLDPRNYIML 447


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/417 (35%), Positives = 240/417 (57%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+      +   +F     +++VSW  ++  F +  L  +A++   EM       +  T
Sbjct: 155 LYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRT 214

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           L  VL AC+    L  G+++H+ I     +  D+F+ NAL DMY KC  LN A  VF+ +
Sbjct: 215 LVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEM 274

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             ++ V++N +I G +      E+L  F  M+  G+K D V+ +G +++CANL  ++ GK
Sbjct: 275 PVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGK 334

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H    R H+    FV N++LD Y + G ID A ++F+ +  +D  S+  +I G  + G
Sbjct: 335 WVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHG 394

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
           E + A  +F  M   G+  + V+++ +L ACSHGGLV +GKKYF +M     ++P   HY
Sbjct: 395 EANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHY 454

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CM+DLLGRAGL+++A ++I  + + PD    GALLGACRI+GNV++G    + L  L P
Sbjct: 455 GCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELDP 514

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
              G YIL++N+Y+   +W +A K+R+ MK+++ +K PGCS ++    V +F   D+
Sbjct: 515 DEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDK 571



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 180/328 (54%), Gaps = 9/328 (2%)

Query: 27  NAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIR 86
           NA++ + ++N + L  ++ + EM +    P+  T+  VL A A    +R G++IHAR I+
Sbjct: 79  NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIK 138

Query: 87  KGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLS 144
            G+  F+++++N L  +Y+ CG ++  Q VF+    RD VS+  LI  +++    S ++ 
Sbjct: 139 TGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVE 198

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH--LHTHLFVANSILDF 202
            F EM  L ++ D  + +  +SAC+NL  +  G+++H   IR +  +   +FV N++LD 
Sbjct: 199 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSY-IRHYIDMKADVFVGNALLDM 257

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y +   ++ A K+FD +PVK+  +WN +I G    G    A++ F  M++ GV  D V+ 
Sbjct: 258 YLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTL 317

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
           + +L +C++ G++E GK     M+ + +   +     ++D+  + G +++A ++ +++  
Sbjct: 318 VGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMK- 376

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAE 350
             D   + A++    ++G      WA +
Sbjct: 377 RRDVYSYTAMIFGLALHGEAN---WAFQ 401


>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14820-like, partial [Brachypodium
           distachyon]
          Length = 498

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 145/441 (32%), Positives = 250/441 (56%), Gaps = 33/441 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA   R AEA  +F  + E+++V+W  M+ ++   +   + L L+ +M      P+ V L
Sbjct: 38  YAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNKMKRSRVVPDQVIL 97

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC--------------- 106
             VL  C     LR GK IH+ I    +  D  L++AL +MYA C               
Sbjct: 98  ATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMDMEMADKIYSGMQR 157

Query: 107 ----------------GCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                           G + +A+++FN ++ +D VS++ +I  Y++ +  SE L+LF++M
Sbjct: 158 KDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKM 217

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
           +  G+  D ++ +  ISACAN+ ++ + + IH +      +  L + N+++D +++ G +
Sbjct: 218 QGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSICNALIDMFSKCGSL 277

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
            LA  +F+ +P K+  +W ++I  + M G+  +A+ LF  M+ +GV  + V+++ +L AC
Sbjct: 278 TLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYAC 337

Query: 270 SHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
            H GLV +G+  F+ M Q   ++P   HY CMVDL+GRA LM++AV LI+++ + P+  I
Sbjct: 338 CHAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVDLMGRAKLMQEAVDLIESMHIRPNVAI 397

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
           WG+LL AC ++G++ELG +AA+ +  L P H G Y+LLSN++A++G W+ A K+R +MK 
Sbjct: 398 WGSLLAACWMHGDIELGEFAAKKILELDPNHDGAYVLLSNIHAKSGNWNNAQKLRVMMKV 457

Query: 389 REAKKNPGCSWVQTRDEVQDF 409
               K  G SW++    V  F
Sbjct: 458 HGVSKETGYSWLELNCTVHGF 478



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 118/248 (47%), Gaps = 5/248 (2%)

Query: 67  ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVS 125
           A AR  +    +  H   +R G + D F+  AL   YA C  +  A+ VF+ +  RD V+
Sbjct: 2   AAARARWTDTVRGTHGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVA 61

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           + +++  Y  T +  E+L L ++M+   +  D V     +S C +   ++ GK IH    
Sbjct: 62  WGVMLDSYFNTQNYRETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQ 121

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
              +     +++++++ Y     +++A+KI+  +  KD  S   ++ GY   G+++ A +
Sbjct: 122 VSDIFVDARLSSALINMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARS 181

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           +F  M E     D VS+ A+++A +      +    F++MQ   V P E+    ++    
Sbjct: 182 IFNHMAEK----DVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACA 237

Query: 306 RAGLMEDA 313
             G ++ A
Sbjct: 238 NIGSLDKA 245



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M++K      A  +F+ +  KN+++W +M+A FA +     AL L  +M      PN VT
Sbjct: 270 MFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVT 329

Query: 61  LTNVLPACARGHFLRPGKEI 80
              +L AC     +  G+ +
Sbjct: 330 FLVLLYACCHAGLVYEGRSL 349


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 156/438 (35%), Positives = 242/438 (55%), Gaps = 25/438 (5%)

Query: 1   MYAKSSRPAEASYLFHNI--AEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPN 57
           MYA   R   A  +F  +    + +  WNAMV  +AQ  ++ +AL+L   M       P+
Sbjct: 316 MYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPS 375

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             T+  VLPACAR       + +H  ++++G+  + F+ NAL D+YA+ G +  A+ +F 
Sbjct: 376 ETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFA 435

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV------------------ 158
            I  RD VS+N LI G        ++  L  EM+  G   D                   
Sbjct: 436 AIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNN 495

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
           V+ M  +  CA LAA  +GKEIHG  +R  L + + V ++++D Y + G + L+  +FD 
Sbjct: 496 VTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDR 555

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEK 277
           LP ++  +WN LI+ YGM G  D AI LF+ M   +    + V++IA L ACSH G+V++
Sbjct: 556 LPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDR 615

Query: 278 GKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGA 335
           G + F  M+ +  V+PT   +AC VD+LGRAG +++A  +I ++ P E   + W + LGA
Sbjct: 616 GMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGA 675

Query: 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395
           CR++ NV LG  AAE LF L+P    +Y+LL N+Y+ AG W+++S+VR  M+ R   K P
Sbjct: 676 CRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEP 735

Query: 396 GCSWVQTRDEVQDFVVND 413
           GCSW++    +  F+  +
Sbjct: 736 GCSWIELDGVIHRFMAGE 753



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 171/355 (48%), Gaps = 16/355 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+      A  LF+ +  ++ V++N+++A     R  L AL  +R+M +     +S TL
Sbjct: 106 YARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTL 165

Query: 62  TNVLPACAR-GHFLRPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
            +VL AC+     LR G+E HA  ++ G     + F  NAL  MYA+ G ++ AQ +F +
Sbjct: 166 VSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGS 225

Query: 118 ISFRDE-----VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
           +   D      V++N ++    Q+  C E++ +  +M   G++ D ++F  A+ AC+ L 
Sbjct: 226 VDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLE 285

Query: 173 AIKQGKEIHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNT 229
            +  G+E+H   ++   L  + FVA++++D Y    R+ +A ++FD +P   +    WN 
Sbjct: 286 MLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNA 345

Query: 230 LILGYGMLGEVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           ++ GY   G  + A+ LF  M  E GV     +   +L AC+        +     +   
Sbjct: 346 MVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKR 405

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP-DANIWGALLGACRIYGNV 342
            +         ++DL  R G ME A  +     +EP D   W  L+  C + G++
Sbjct: 406 GMADNPFVQNALMDLYARLGDMEAARWIFA--AIEPRDVVSWNTLITGCVVQGHI 458



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 174/368 (47%), Gaps = 29/368 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKN-----IVSWNAMVANFAQNRLELKALQLVREMPIHNEF 55
           MYA+     +A  LF ++   +     +V+WN MV+   Q+    +A++++ +M      
Sbjct: 209 MYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVR 268

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQN 114
           P+ +T  + LPAC++   L  G+E+HA +++   L  + F+ +AL DMYA    + +A+ 
Sbjct: 269 PDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARR 328

Query: 115 VFNI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL-LGMKHDVVSFMGAISACAN 170
           VF++     R    +N ++ GY+Q     E+L LF+ M    G+     +  G + ACA 
Sbjct: 329 VFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACAR 388

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
                  + +HG  +++ +  + FV N+++D Y R G ++ A  IF  +  +D  SWNTL
Sbjct: 389 SETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTL 448

Query: 231 ILGYGMLGEVDTAINLFEAMR----------EDGV-GYDP-------VSYIAILTACSHG 272
           I G  + G +  A  L   M+          EDG+ G D        V+ + +L  C+  
Sbjct: 449 ITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAML 508

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
               KGK+        ++       + +VD+  + G +  +  +   LP + +   W  L
Sbjct: 509 AAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLP-KRNVITWNVL 567

Query: 333 LGACRIYG 340
           + A  ++G
Sbjct: 568 IMAYGMHG 575



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 15/229 (6%)

Query: 78  KEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYS 134
           + IH   +R+ L   F   + NAL   YA+CG L  A  +FN +  RD V++N LI    
Sbjct: 79  RSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALC 138

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA-IKQGKEIHGVTIRKHL--HT 191
                  +L    +M L G      + +  + AC++LA  ++ G+E H   ++       
Sbjct: 139 LFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGD 198

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDS-----ASWNTLILGYGMLGEVDTAINL 246
             F  N++L  Y R G +D A  +F  +   DS      +WNT++      G    AI +
Sbjct: 199 ERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEV 258

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
              M   GV  D +++ + L ACS   ++  G+    EM A  +K +++
Sbjct: 259 IYDMVARGVRPDGITFASALPACSQLEMLSLGR----EMHAYVLKDSDL 303



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 48/238 (20%)

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLF---VANSILDFYTRSGRIDLANKIFDCLP 220
           A  + A L ++   + IHG  +R+ L  H F   VAN++L  Y R G +  A  +F+ +P
Sbjct: 65  AAKSAAALRSLIAVRSIHGAALRRDL-LHGFTPAVANALLTAYARCGDLTAALALFNAMP 123

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH--------- 271
            +D+ ++N+LI    +      A++    M  +G      + +++L ACSH         
Sbjct: 124 SRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGR 183

Query: 272 -----------------------------GGLVEKGKKYFDEMQ-ADSVKPTEMHYACMV 301
                                         GLV+  +  F  +   DS     + +  MV
Sbjct: 184 EAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMV 243

Query: 302 DLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
            LL ++G   +A+++I ++    V PD   + + L AC     + LG     H ++LK
Sbjct: 244 SLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLG--REMHAYVLK 299


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/404 (36%), Positives = 246/404 (60%), Gaps = 4/404 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN--EFP-N 57
           MYAK  +   A+ +F  + +++  SW++MV  + +  L+LK L+L REM   +  EF  +
Sbjct: 360 MYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYD 419

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           + +L +++ +C+R   LR G+  H   I+     +  + NAL  MY +CG  ++A+ +F 
Sbjct: 420 TNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFG 479

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  +D V+++ LI  YS      ++L L+ +M   G+K +  + +  IS+CANLAA++ 
Sbjct: 480 MVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEH 539

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+ IH       L   L +  +++D Y + G++ +A K+FD +  +D  +WN +I GYGM
Sbjct: 540 GELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGM 599

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            GE   A+ LF  M    V  + ++++AIL+AC H GLV+KG++ F  M+  S++P   H
Sbjct: 600 HGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKH 659

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YACMVDLLG++G +++A  ++  +P+EPD  IWG LLGAC+++ N E+G   A+  F   
Sbjct: 660 YACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASD 719

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
           P++ GYYIL+SN Y  A KW+E  K+R++MK+   +K+ G S +
Sbjct: 720 PENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTI 763



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 172/344 (50%), Gaps = 5/344 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  LF  + EK++VSW +++  + +     KA++L   M      P+ V 
Sbjct: 259 MYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVV 318

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++ +L        +R GK  HA I+R+     + + NAL  MYAKC  +++A  VF  + 
Sbjct: 319 ISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLH 378

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG---MKHDVVSFMGAISACANLAAIKQ 176
            RD  S++ ++V Y +     + L L+ EM+       ++D  S +  IS+C+ L  ++ 
Sbjct: 379 QRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRL 438

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+  H  +I+     +  VAN+++  Y R G  D+A KIF  +  KD  +W+ LI  Y  
Sbjct: 439 GQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSH 498

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
           LG    A+ L++ M  +GV  +  + ++++++C++   +E G+     ++   ++     
Sbjct: 499 LGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSI 558

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
              +VD+  + G +  A K+  ++ +E D   W  ++    ++G
Sbjct: 559 CTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHG 601



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 127/266 (47%), Gaps = 8/266 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKAL----QLVREMPIHNEFP 56
           MYA+     +A  LF  + E+++V+W A+++    N    + L    ++VR        P
Sbjct: 154 MYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARP 213

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           NS T+ + L AC     L  G  +H   ++ G+     + ++L  MY KC     A+ +F
Sbjct: 214 NSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILF 273

Query: 117 -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
             +  +D VS+  LI  Y +     +++ LF  M   G++ D V     ++   N A ++
Sbjct: 274 PELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVR 333

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK  H   +R++    + + N+++  Y +  ++D+A  +F  L  +D+ SW+++++ Y 
Sbjct: 334 GGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYC 393

Query: 236 MLGEVDTAINLFEAMR---EDGVGYD 258
             G     + L+  M+   +D   YD
Sbjct: 394 KAGLDLKCLELYREMQFRDKDEFEYD 419



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 112/264 (42%), Gaps = 8/264 (3%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           WN+++ +  +       L   R M      P+  T   V  A A    L  G  +HA  +
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 86  RKGL---NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSE 141
           R GL   +  + + ++L  MYA+CG +  A  +F+ +  RD V++  +I G      C E
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 142 SLSLFSEMRLL----GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
            LS    M       G + +  +    + AC  L  +  G  +HG  ++  +     V +
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVS 254

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
           S+   YT+    + A  +F  LP KD  SW +LI  Y   G  + A+ LF  M E G+  
Sbjct: 255 SLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP 314

Query: 258 DPVSYIAILTACSHGGLVEKGKKY 281
           D V    +L    +   V  GK +
Sbjct: 315 DEVVISCLLAGLGNDAKVRGGKTF 338


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/405 (36%), Positives = 246/405 (60%), Gaps = 4/405 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN--EFP-N 57
           MYAK  +   A+ +F  + +++  SW++MV  + +  L+LK L+L REM   +  EF  +
Sbjct: 360 MYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYD 419

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           + +L +++ +C+R   LR G+  H   I+     +  + NAL  MY +CG  ++A+ +F 
Sbjct: 420 TNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFG 479

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  +D V+++ LI  YS      ++L L+ +M   G+K +  + +  IS+CANLAA++ 
Sbjct: 480 MVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEH 539

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+ IH       L   L +  +++D Y + G++ +A K+FD +  +D  +WN +I GYGM
Sbjct: 540 GELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGM 599

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            GE   A+ LF  M    V  + ++++AIL+AC H GLV+KG++ F  M+  S++P   H
Sbjct: 600 HGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKH 659

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YACMVDLLG++G +++A  ++  +P+EPD  IWG LLGAC+++ N E+G   A+  F   
Sbjct: 660 YACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASD 719

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQ 401
           P++ GYYIL+SN Y  A KW+E  K+R++MK+   +K+ G S + 
Sbjct: 720 PENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTID 764



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 172/344 (50%), Gaps = 5/344 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  LF  + EK++VSW +++  + +     KA++L   M      P+ V 
Sbjct: 259 MYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVV 318

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++ +L        +R GK  HA I+R+     + + NAL  MYAKC  +++A  VF  + 
Sbjct: 319 ISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLH 378

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG---MKHDVVSFMGAISACANLAAIKQ 176
            RD  S++ ++V Y +     + L L+ EM+       ++D  S +  IS+C+ L  ++ 
Sbjct: 379 QRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRL 438

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+  H  +I+     +  VAN+++  Y R G  D+A KIF  +  KD  +W+ LI  Y  
Sbjct: 439 GQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSH 498

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
           LG    A+ L++ M  +GV  +  + ++++++C++   +E G+     ++   ++     
Sbjct: 499 LGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSI 558

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
              +VD+  + G +  A K+  ++ +E D   W  ++    ++G
Sbjct: 559 CTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHG 601



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 127/266 (47%), Gaps = 8/266 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKAL----QLVREMPIHNEFP 56
           MYA+     +A  LF  + E+++V+W A+++    N    + L    ++VR        P
Sbjct: 154 MYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARP 213

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           NS T+ + L AC     L  G  +H   ++ G+     + ++L  MY KC     A+ +F
Sbjct: 214 NSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILF 273

Query: 117 -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
             +  +D VS+  LI  Y +     +++ LF  M   G++ D V     ++   N A ++
Sbjct: 274 PELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVR 333

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK  H   +R++    + + N+++  Y +  ++D+A  +F  L  +D+ SW+++++ Y 
Sbjct: 334 GGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYC 393

Query: 236 MLGEVDTAINLFEAMR---EDGVGYD 258
             G     + L+  M+   +D   YD
Sbjct: 394 KAGLDLKCLELYREMQFRDKDEFEYD 419



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 112/264 (42%), Gaps = 8/264 (3%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           WN+++ +  +       L   R M      P+  T   V  A A    L  G  +HA  +
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 86  RKGL---NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSE 141
           R GL   +  + + ++L  MYA+CG +  A  +F+ +  RD V++  +I G      C E
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 142 SLSLFSEMRLL----GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
            LS    M       G + +  +    + AC  L  +  G  +HG  ++  +     V +
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVS 254

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
           S+   YT+    + A  +F  LP KD  SW +LI  Y   G  + A+ LF  M E G+  
Sbjct: 255 SLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP 314

Query: 258 DPVSYIAILTACSHGGLVEKGKKY 281
           D V    +L    +   V  GK +
Sbjct: 315 DEVVISCLLAGLGNDAKVRGGKTF 338


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 146/406 (35%), Positives = 237/406 (58%), Gaps = 4/406 (0%)

Query: 18  IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPG 77
           +  +++V+WN+M+  +  +  +  A  L  EM      P+  T T V+ AC        G
Sbjct: 265 VGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYG 324

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCG--CLNLAQNVFN-ISFRDEVSYNILIVGYS 134
           K  HA +I++GL   + + NAL  MY K     +  A N+F+ +  +D VS+N ++ G+S
Sbjct: 325 KSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFS 384

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
           Q     ++L LF  MR    + D  ++   + +C++LA ++ G++IH +T++    ++ F
Sbjct: 385 QMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDF 444

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           VA+S++  Y++ G I+ A K F+    + S +WN+++  Y   G+ D A++LF  MRE  
Sbjct: 445 VASSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIMRERE 504

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HYACMVDLLGRAGLMEDA 313
           V  D V+++A+LTACSH GLVE+G+     M++D   P  M HYAC VDL GRAG +E+A
Sbjct: 505 VKLDHVTFVAVLTACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGYLEEA 564

Query: 314 VKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEA 373
             LI ++P +P+A +   LLGACR  GN+EL A  A  L  ++P+    Y++LSNMY   
Sbjct: 565 KALIDSMPFQPNAMVLKTLLGACRACGNIELAAQVASQLLEVEPEEHCTYVILSNMYGHL 624

Query: 374 GKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
            +WD+ + V  LM+ R+ KK PG SW++ ++EV  F   DR   ++
Sbjct: 625 KRWDDKASVTRLMRERKVKKVPGWSWIEVKNEVHAFKAEDRSHPYS 670



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 164/345 (47%), Gaps = 5/345 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R  +A  +F  +  +N VSWNA++  F Q      A  L+  M          T
Sbjct: 146 MYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRVEDGT 205

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--I 118
              +L       F +   ++H +II+ GL F   L NA    Y++CG L  A+ VF+  +
Sbjct: 206 FAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRVFDGAV 265

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD V++N ++V Y       ++ +LF EM+  G + D+ ++   ISAC   A    GK
Sbjct: 266 GTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGK 325

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTR--SGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
             H + I++ L   + + N+++  Y +  +  ++ A  +F  +  KD  SWN+++ G+  
Sbjct: 326 SFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQ 385

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
           +G  + A+ LF  MR      D  +Y A+L +CS   +++ G++             +  
Sbjct: 386 MGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFV 445

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
            + ++ +  + G++EDA K  ++   E     W +++ A   +G 
Sbjct: 446 ASSLIFMYSKCGIIEDAWKCFEDTTKESSIT-WNSIMFAYAQHGQ 489



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 134/275 (48%), Gaps = 6/275 (2%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  +  K+ V+WN M+  + ++     A + ++ M       +  T  ++L   A 
Sbjct: 55  ACKLFDEMPHKDTVTWNTMITGYVESGNLGAAWEFLKSMKRRGFQADGYTFGSILKGVAH 114

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
                 G+++H+ I++ G    ++  +AL DMYAKC  +  A +VF  +  R+ VS+N L
Sbjct: 115 ACRHDLGQQVHSLIVKIGYEQSVYAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSWNAL 174

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I G+ Q  D   +  L   M+  G++ +  +F   ++        K   ++H   I+  L
Sbjct: 175 IDGFVQVGDRDTAFWLLDCMQKEGVRVEDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGL 234

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFD-CLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
             +  + N+ L  Y+  G ++ A ++FD  +  +D  +WN++++ Y +  + + A NLF 
Sbjct: 235 EFYNALCNATLTAYSECGLLEDAKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFL 294

Query: 249 AMREDGVGYDP--VSYIAILTACSHGGLVEKGKKY 281
            M+  G G++P   +Y  +++AC        GK +
Sbjct: 295 EMQ--GFGFEPDIYTYTCVISACFAAAHKNYGKSF 327



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 144/311 (46%), Gaps = 27/311 (8%)

Query: 81  HARIIRKGLNFDLFLTNALTDMYAKC--GCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
           H +  + G+   +++ N +   Y+KC  G LNLA  +F+ +  +D V++N +I GY ++ 
Sbjct: 22  HCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESG 81

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
           +   +      M+  G + D  +F   +   A+      G+++H + ++      ++  +
Sbjct: 82  NLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAGS 141

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
           ++LD Y +  R++ A  +F  +PV++  SWN LI G+  +G+ DTA  L + M+++GV  
Sbjct: 142 ALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRV 201

Query: 258 DPVSYIAILTACS-----------HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
           +  ++  +LT              H  +++ G ++++ +       T   Y+        
Sbjct: 202 EDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNAL----CNATLTAYS-------E 250

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE--LGAWAAEHLFMLKPQHCGYYI 364
            GL+EDA ++        D   W ++L A  ++   E     +     F  +P    Y  
Sbjct: 251 CGLLEDAKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTC 310

Query: 365 LLSNMYAEAGK 375
           ++S  +A A K
Sbjct: 311 VISACFAAAHK 321



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 129/243 (53%), Gaps = 16/243 (6%)

Query: 1   MYAK-SSRPAEASY-LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY K +++  EA+  LFH++  K+ VSWN+++  F+Q      AL+L   M    E  + 
Sbjct: 349 MYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLEEIDD 408

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
              + VL +C+    L+ G++IH   ++ G + + F+ ++L  MY+KCG +  A   F  
Sbjct: 409 YAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFED 468

Query: 119 SFRD-EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           + ++  +++N ++  Y+Q      +L LFS MR   +K D V+F+  ++AC+++  ++QG
Sbjct: 469 TTKESSITWNSIMFAYAQHGQGDVALDLFSIMREREVKLDHVTFVAVLTACSHVGLVEQG 528

Query: 178 KEI-------HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           + +       +G+  R     H   A   +D + R+G ++ A  + D +P + +A     
Sbjct: 529 RCVLKSMESDYGIPPRME---HYACA---VDLFGRAGYLEEAKALIDSMPFQPNAMVLKT 582

Query: 231 ILG 233
           +LG
Sbjct: 583 LLG 585


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 238/416 (57%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +F  +  K+ VSW AM+  +++     +AL   ++M       +   
Sbjct: 150 MYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHV 209

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-- 118
           L + L AC      + G+ +H+ +++ G   D+F+ NALTDMY+K G +  A NVF I  
Sbjct: 210 LCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDS 269

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ VSY  LI GY +T    + LS+F E+R  G++ +  +F   I ACAN AA++QG 
Sbjct: 270 ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGT 329

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++H   ++ +     FV++ ++D Y + G ++ A + FD +      +WN+L+  +G  G
Sbjct: 330 QLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHG 389

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               AI  FE M + GV  + +++I++LT CSH GLVE+G  YF  M +   V P E HY
Sbjct: 390 LGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHY 449

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +C++DLLGRAG +++A + I  +P EP+A  W + LGACRI+G+ E+G  AAE L  L+P
Sbjct: 450 SCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEP 509

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           ++ G  +LLSN+YA   +W++   VR  M+    KK PG SWV    +   F   D
Sbjct: 510 KNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAED 565



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 208/420 (49%), Gaps = 40/420 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  LF  + ++N+VSW AM++  +QN    +A++    M I  E P    
Sbjct: 49  MYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFA 108

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            ++ + ACA    +  GK++H   ++ G+  +LF+ + L DMY+KCG +  A  VF  + 
Sbjct: 109 FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP 168

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +DEVS+  +I GYS+  +  E+L  F +M    +  D       + AC  L A K G+ 
Sbjct: 169 CKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRS 228

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC-LPVKDSASWNTLILGYGMLG 238
           +H   ++    + +FV N++ D Y+++G ++ A+ +F      ++  S+  LI GY    
Sbjct: 229 VHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETE 288

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY--------FDE------ 284
           +++  +++F  +R  G+  +  ++ +++ AC++   +E+G +         FDE      
Sbjct: 289 QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 348

Query: 285 ---------------MQA-DSV-KPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEP 324
                          +QA D +  PTE+ +  +V + G+ GL +DA+K  + +    V+P
Sbjct: 349 ILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKP 408

Query: 325 DANIWGALLGACRIYGNVELGA---WAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381
           +A  + +LL  C   G VE G    ++ +  + + P    +Y  + ++   AG+  EA +
Sbjct: 409 NAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGE-EHYSCVIDLLGRAGRLKEAKE 467



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 143/258 (55%), Gaps = 9/258 (3%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +V+   A+   LR GK++HA +I  G     FLTN L +MY+KCG L+ A  +F+ + 
Sbjct: 8   LAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMP 67

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+  +I G SQ S  SE++  F  MR+ G      +F  AI ACA+L +I+ GK+
Sbjct: 68  QRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQ 127

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + ++  + + LFV +++ D Y++ G +  A K+F+ +P KD  SW  +I GY  +GE
Sbjct: 128 MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGE 187

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK---PTEMH 296
            + A+  F+ M ++ V  D     + L AC  G L  K  K+   + +  VK    +++ 
Sbjct: 188 FEEALLAFKKMIDEEVTIDQHVLCSTLGAC--GAL--KACKFGRSVHSSVVKLGFESDIF 243

Query: 297 YA-CMVDLLGRAGLMEDA 313
               + D+  +AG ME A
Sbjct: 244 VGNALTDMYSKAGDMESA 261



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 9/194 (4%)

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
           M  D  +    I   A    +++GK++H + I        F+ N +++ Y++ G +D A 
Sbjct: 1   MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHAL 60

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
           K+FD +P ++  SW  +I G     +   AI  F  MR  G      ++ + + AC+  G
Sbjct: 61  KLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLG 120

Query: 274 LVEKGKKYFDEMQADSVK---PTEMHYAC-MVDLLGRAGLMEDAVKLIKNLPVEPDANIW 329
            +E GK    +M   ++K    +E+     + D+  + G M DA K+ + +P + + + W
Sbjct: 121 SIEMGK----QMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVS-W 175

Query: 330 GALLGACRIYGNVE 343
            A++      G  E
Sbjct: 176 TAMIDGYSKIGEFE 189


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/404 (36%), Positives = 246/404 (60%), Gaps = 4/404 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN--EFP-N 57
           MYAK  +   A+ +F  + +++  SW++MV  + +  L+LK L+L REM   +  EF  +
Sbjct: 360 MYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYD 419

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           + +L +++ +C+R   LR G+  H   I+     +  + NAL  MY +CG  ++A+ +F 
Sbjct: 420 TNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFG 479

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  +D V+++ LI  YS      ++L L+ +M   G+K +  + +  IS+CANLAA++ 
Sbjct: 480 MVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEH 539

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+ IH       L   L +  +++D Y + G++ +A K+FD +  +D  +WN +I GYGM
Sbjct: 540 GELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGM 599

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            GE   A+ LF  M    V  + ++++AIL+AC H GLV+KG++ F  M+  S++P   H
Sbjct: 600 HGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKH 659

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YACMVDLLG++G +++A  ++  +P+EPD  IWG LLGAC+++ N E+G   A+  F   
Sbjct: 660 YACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASD 719

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
           P++ GYYIL+SN Y  A KW+E  K+R++MK+   +K+ G S +
Sbjct: 720 PENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTI 763



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 172/344 (50%), Gaps = 5/344 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  LF  + EK++VSW +++  + +     KA++L   M      P+ V 
Sbjct: 259 MYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVV 318

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++ +L        +R GK  HA I+R+     + + NAL  MYAKC  +++A  VF  + 
Sbjct: 319 ISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLH 378

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG---MKHDVVSFMGAISACANLAAIKQ 176
            RD  S++ ++V Y +     + L L+ EM+       ++D  S +  IS+C+ L  ++ 
Sbjct: 379 QRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRL 438

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+  H  +I+     +  VAN+++  Y R G  D+A KIF  +  KD  +W+ LI  Y  
Sbjct: 439 GQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSH 498

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
           LG    A+ L++ M  +GV  +  + ++++++C++   +E G+     ++   ++     
Sbjct: 499 LGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSI 558

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
              +VD+  + G +  A K+  ++ +E D   W  ++    ++G
Sbjct: 559 CTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHG 601



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 127/266 (47%), Gaps = 8/266 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKAL----QLVREMPIHNEFP 56
           MYA+     +A  LF  + E+++V+W A+++    N    + L    ++VR        P
Sbjct: 154 MYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARP 213

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           NS T+ + L AC     L  G  +H   ++ G+     + ++L  MY KC     A+ +F
Sbjct: 214 NSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILF 273

Query: 117 -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
             +  +D VS+  LI  Y +     +++ LF  M   G++ D V     ++   N A ++
Sbjct: 274 PELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVR 333

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK  H   +R++    + + N+++  Y +  ++D+A  +F  L  +D+ SW+++++ Y 
Sbjct: 334 GGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYC 393

Query: 236 MLGEVDTAINLFEAMR---EDGVGYD 258
             G     + L+  M+   +D   YD
Sbjct: 394 KAGLDLKCLELYREMQFRDKDEFEYD 419



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 112/264 (42%), Gaps = 8/264 (3%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           WN+++ +  +       L   R M      P+  T   V  A A    L  G  +HA  +
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 86  RKGL---NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSE 141
           R GL   +  + + ++L  MYA+CG +  A  +F+ +  RD V++  +I G      C E
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 142 SLSLFSEMRLL----GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
            LS    M       G + +  +    + AC  L  +  G  +HG  ++  +     V +
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVS 254

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257
           S+   YT+    + A  +F  LP KD  SW +LI  Y   G  + A+ LF  M E G+  
Sbjct: 255 SLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP 314

Query: 258 DPVSYIAILTACSHGGLVEKGKKY 281
           D V    +L    +   V  GK +
Sbjct: 315 DEVVISCLLAGLGNDAKVRGGKTF 338


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/419 (34%), Positives = 251/419 (59%), Gaps = 9/419 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK        Y F  + EK+++SW  ++A +AQN   L+A+ L R++ +     + + 
Sbjct: 393 MYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMM 452

Query: 61  LTNVLPACA---RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF- 116
           + +VL AC+     +F+R   EIH  + ++ L  D+ L NA+ ++Y + G  + A+  F 
Sbjct: 453 IGSVLRACSGLKSRNFIR---EIHGYVFKRDLA-DIMLQNAIVNVYGEVGHRDYARRAFE 508

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
           +I  +D VS+  +I          E+L LF  ++   ++ D ++ + A+SA ANL+++K+
Sbjct: 509 SIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKK 568

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GKEIHG  IRK       +A+S++D Y   G ++ + K+F  +  +D   W ++I   GM
Sbjct: 569 GKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGM 628

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPTEM 295
            G  + AI LF+ M ++ V  D ++++A+L ACSH GL+ +GK++F+ M+    ++P   
Sbjct: 629 HGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPE 688

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYACMVDLL R+  +E+A + ++++P++P + +W ALLGAC I+ N ELG  AA+ L   
Sbjct: 689 HYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQS 748

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             ++ G Y L+SN++A  G+W++  +VR  MK    KKNPGCSW++  +++  F+  D+
Sbjct: 749 DTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDK 807



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 179/341 (52%), Gaps = 3/341 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R  +A  +F ++  ++ VSWN +++   QN L   AL   R+M    + P+ V+
Sbjct: 292 MYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVS 351

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + N++ A  R   L  GKE+HA  IR GL+ ++ + N L DMYAKC C+      F  + 
Sbjct: 352 VLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMH 411

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S+  +I GY+Q     E+++LF ++++ GM  D +     + AC+ L +    +E
Sbjct: 412 EKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIRE 471

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG   ++ L   + + N+I++ Y   G  D A + F+ +  KD  SW ++I      G 
Sbjct: 472 IHGYVFKRDL-ADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGL 530

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ LF ++++  +  D ++ I+ L+A ++   ++KGK+    +            + 
Sbjct: 531 PVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASS 590

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           +VD+    G +E++ K+  ++  + D  +W +++ A  ++G
Sbjct: 591 LVDMYACCGTVENSRKMFHSVK-QRDLILWTSMINANGMHG 630



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 146/283 (51%), Gaps = 3/283 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  + E+ I +WNAM+  F  +   L+A++L +EM +     ++ T
Sbjct: 88  MYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACT 147

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
             +VL AC      R G EIH   ++ G    +F+ NAL  MY KCG L  A+ +F+   
Sbjct: 148 FPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIM 207

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +   D VS+N +I  +     C E+LSLF  M+ +G+  +  +F+ A+    + + +K G
Sbjct: 208 MEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
             IHG  ++ +    ++VAN+++  Y + GR++ A ++F  +  +D  SWNTL+ G    
Sbjct: 268 MGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQN 327

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
                A+N F  M+      D VS + ++ A    G +  GK+
Sbjct: 328 ELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKE 370



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 136/279 (48%), Gaps = 18/279 (6%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L  C     L  G+++HAR+++  L+   FL   L  MY KCG L  A  VF+ ++ R 
Sbjct: 52  LLDLCVAVKALPQGQQLHARLLKSHLS--AFLATKLLHMYEKCGSLKDAVKVFDEMTERT 109

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
             ++N ++  +  +    E++ L+ EMR+LG+  D  +F   + AC  L   + G EIHG
Sbjct: 110 IFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHG 169

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNTLILGYGMLGEV 240
           V ++      +FV N+++  Y + G +  A  +FD + +  +D+ SWN++I  +   G+ 
Sbjct: 170 VAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKC 229

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-- 298
             A++LF  M+E GV  +  +++A L        V+ G      M          H+A  
Sbjct: 230 LEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG------MGIHGAALKSNHFADV 283

Query: 299 ----CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                ++ +  + G MEDA ++  ++    D   W  LL
Sbjct: 284 YVANALIAMYAKCGRMEDAERVFASMLCR-DYVSWNTLL 321



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 11/173 (6%)

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           C  + A+ QG+++H   ++ HL    F+A  +L  Y + G +  A K+FD +  +   +W
Sbjct: 56  CVAVKALPQGQQLHARLLKSHLSA--FLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTW 113

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           N ++  +   G+   AI L++ MR  GV  D  ++ ++L AC   G    G     E+  
Sbjct: 114 NAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGA----EIHG 169

Query: 288 DSVKP--TEMHYAC--MVDLLGRAGLMEDAVKLIKNLPVEPDANI-WGALLGA 335
            +VK    E  + C  ++ + G+ G +  A  L   + +E +  + W +++ A
Sbjct: 170 VAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISA 222


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 140/417 (33%), Positives = 244/417 (58%), Gaps = 5/417 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVT 60
           YA+    A A  +F  I  ++ VSWN+M+A +A+     +A+++ REM   + F P+ ++
Sbjct: 167 YARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMS 226

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L ++L AC     L  G+ +   ++ +G+  + ++ +AL  MYAKCG L  A+ +F+ ++
Sbjct: 227 LVSLLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMA 286

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +++N +I GY+Q     E++ LF  M+   +  + ++    +SACA + A+  GK+
Sbjct: 287 ARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQ 346

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I     ++     +FVA +++D Y +SG +D A ++F  +P K+ ASWN +I      G+
Sbjct: 347 IDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGK 406

Query: 240 VDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMH 296
              A++LF+ M ++G G  P  ++++ +L+AC H GLV++G + FD M     + P   H
Sbjct: 407 AKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEH 466

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y+CMVDLL RAG + +A  LI+ +P +PD    GALLGACR   NV++G      +  + 
Sbjct: 467 YSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDIGERVMRMILEVD 526

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P + G YI+ S +YA    W++++++R LM+ +   K PGCSW++  + + +F   D
Sbjct: 527 PSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENHLHEFHAGD 583



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 195/387 (50%), Gaps = 12/387 (3%)

Query: 11  ASYLFHNIA-EKNIVSWNAMVANFAQNRLELK-ALQLVREMPIHNEFPNSVTLTNVLPAC 68
           +S LF +IA   N  ++N M+            AL L   M   +  P++ T      +C
Sbjct: 73  SSLLFSHIAPHPNDYAFNIMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFTFPFFFLSC 132

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
           A    L      H+ + +  L+ D    ++L   YA+CG +  A+ VF+ I  RD VS+N
Sbjct: 133 ANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWN 192

Query: 128 ILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
            +I GY++     E++ +F EM R  G + D +S +  + AC  L  ++ G+ + G  + 
Sbjct: 193 SMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVE 252

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
           + +  + ++ ++++  Y + G ++ A +IFD +  +D  +WN +I GY   G  D AI L
Sbjct: 253 RGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILL 312

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-CMVDLLG 305
           F  M+ED V  + ++  A+L+AC+  G ++ GK+  DE  +      ++  A  ++D+  
Sbjct: 313 FHGMKEDCVTANKITLTAVLSACATIGALDLGKQ-IDEYASQRGFQHDIFVATALIDMYA 371

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF----MLKPQHCG 361
           ++G +++A ++ K++P + +A+ W A++ A   +G  +      +H+       +P    
Sbjct: 372 KSGSLDNAQRVFKDMPQKNEAS-WNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDIT 430

Query: 362 YYILLSNMYAEAGKWDEASKVRELMKS 388
           +  LLS     AG  DE  ++ ++M +
Sbjct: 431 FVGLLSAC-VHAGLVDEGYRLFDMMST 456


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/419 (35%), Positives = 240/419 (57%), Gaps = 2/419 (0%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MY K     +A  +F+ + E+++V+W +M+A F QNR    AL L R M       +S  
Sbjct: 794  MYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDV 853

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +T+V+ A      +  G  IH   I++GL  D+F+  +L DMY+K G    A+ VF+ + 
Sbjct: 854  MTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMP 913

Query: 120  FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             ++ V++N +I  YS       S++L  ++   G   D VS    + A +++AA+ +GK 
Sbjct: 914  NKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKT 973

Query: 180  IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            +H   IR  + + L V N+++D Y + G +  A  IF+ +P ++  +WN++I GYG  G 
Sbjct: 974  LHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGN 1033

Query: 240  VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
             + A+ LF+ M+      D V+++A++T+CSH G+VE+G   F  M+ +  V+P   HYA
Sbjct: 1034 CEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYA 1093

Query: 299  CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
             +VDLLGRAG ++DA   I+ +P++ D ++W  LL ACR + N+ELG   A++L  ++P 
Sbjct: 1094 SVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPA 1153

Query: 359  HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKT 417
                Y+ L N+Y E   WD A+ +R  MK R  KK+PGCSW++ ++ V  F   D   T
Sbjct: 1154 RGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKNRVDVFFSGDSSST 1212



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 160/327 (48%), Gaps = 10/327 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MY+  SRP EA  LF  +  + NIV+WN M+  F +N +  K+L+L       N    S 
Sbjct: 591 MYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSA 650

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           + T    AC+ G  L  G+++H  +I+     D ++  +L  MYAK G +  A+ VF+  
Sbjct: 651 SFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQV 710

Query: 120 FRDEVSY-NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              EV   N +I  +       ++L L+++M+      D  +    +S C+ + +   G+
Sbjct: 711 LDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGR 770

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H   I++ + +++ + +++L  Y + G  + A+ +F  +  +D  +W ++I G+    
Sbjct: 771 TVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNR 830

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK---PTEM 295
               A++LF AM ++GV  D      ++T+    GL  +  +    +   ++K    +++
Sbjct: 831 RFKDALDLFRAMEKEGVKADS----DVMTSVISAGLGLENVELGHLIHGFAIKRGLESDV 886

Query: 296 HYAC-MVDLLGRAGLMEDAVKLIKNLP 321
             AC +VD+  + G  E A  +  ++P
Sbjct: 887 FVACSLVDMYSKFGFAESAEMVFSSMP 913



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 159/348 (45%), Gaps = 15/348 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEK-----NIVSWNAMV-ANFAQNRLELKALQLVR--EMPIH 52
           MY K      A  +F  ++E      +I  WN ++   F     E    Q  R  E+ I 
Sbjct: 485 MYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIR 544

Query: 53  NEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
              P+  +L+ VL  C R  +   G++IH  IIR     D +L  AL  MY+ C     A
Sbjct: 545 ---PDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEA 601

Query: 113 QNVF-NISFRDE-VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170
            ++F  +  R   V++N++I G+ +     +SL L+S  +    K    SF GA +AC++
Sbjct: 602 WSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSH 661

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
              +  G+++H   I+ +     +V  S+L  Y +SG ++ A K+FD +  K+    N +
Sbjct: 662 GEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAM 721

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           I  +   G    A+ L+  M+      D  +  ++L+ CS  G  + G+    E+   S+
Sbjct: 722 ISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSM 781

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL-GACR 337
           +      + ++ +  + G  EDA  +   +  E D   WG+++ G C+
Sbjct: 782 QSNVAIQSALLTMYYKCGSTEDADSVFYTMK-ERDVVAWGSMIAGFCQ 828



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 151/325 (46%), Gaps = 28/325 (8%)

Query: 39  ELKAL----QLVREMPIHNEFPNSV------TLTNVLPACARGHFLRPGKEIHARIIRKG 88
           E+KAL    +  + + +H++ P+S       T  ++L  CA    L  G+ IHA I+  G
Sbjct: 412 EIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMG 471

Query: 89  LNFDLFLTNALTDMYAKCGCLNLAQNVFNI------SFRDEVSYNILIVGYSQTSDCSES 142
           L  D ++  +L +MY KCG L  A  VF+       S  D   +N +I GY +     E 
Sbjct: 472 LQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEG 531

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
           L+ F  M+ LG++ D  S    +  C  L+    G++IHG  IR       ++  +++  
Sbjct: 532 LAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGM 591

Query: 203 YTRSGRIDLANKIFDCLPVKDS-ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
           Y+   R   A  +F  L  + +  +WN +I G+   G  + ++ L+   + +       S
Sbjct: 592 YSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSAS 651

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPT--EMHYAC--MVDLLGRAGLMEDAVKLI 317
           +    TACSHG +++ G+    ++  D +K    +  Y C  ++ +  ++G +EDA K+ 
Sbjct: 652 FTGAFTACSHGEVLDFGR----QVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVF 707

Query: 318 KNL---PVEPDANIWGALLGACRIY 339
             +    VE    +  A +G  R Y
Sbjct: 708 DQVLDKEVELRNAMISAFIGNGRAY 732


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 155/439 (35%), Positives = 242/439 (55%), Gaps = 34/439 (7%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACA 69
           A  +F  I   N+ SWN ++  F+Q+     A+ L  +M I +   P+ +T  +V  A A
Sbjct: 77  AYLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYA 136

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF------------- 116
           +      G ++H R+I+ GL FD F+ N +  MYA CG L+     F             
Sbjct: 137 QLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNS 196

Query: 117 -------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157
                               +  R+ VS+N +I GY +     E+L LF +M+   +K  
Sbjct: 197 MIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPS 256

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
             + +  ++A A L A+KQG+ IH    + +   ++ V  SI+D Y + G I  A ++F+
Sbjct: 257 EFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFE 316

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
             P+K  +SWNT+ILG  M G  + AI LF  +    +  D V+++ +LTAC++ GLV+K
Sbjct: 317 MAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDK 376

Query: 278 GKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
            K+YF  M +   ++P+  HY+CMVD LGRAGL+E+A +LI+N+PV PDA IW +LL AC
Sbjct: 377 AKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSAC 436

Query: 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPG 396
           R +GNVEL   AA+H+  L       Y+LLSN+YA + +++EA + R  MK ++ +K PG
Sbjct: 437 RKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEPG 496

Query: 397 CSWVQTRDEVQDFVVNDRM 415
           CS ++   E+ +FV   R+
Sbjct: 497 CSLIEVNGEIHEFVAGGRL 515



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 126/244 (51%), Gaps = 3/244 (1%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
           AK     E+  LF  +  +N VSWN+M++ + +N    +AL L  +M      P+  T+ 
Sbjct: 202 AKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMV 261

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FR 121
           ++L A AR   L+ G+ IH  I +     ++ +T ++ DMY KCG +  A  VF ++  +
Sbjct: 262 SLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLK 321

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
              S+N +I+G +     +E++ LFS +    ++ D V+F+G ++AC     + + KE  
Sbjct: 322 GLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYF 381

Query: 182 GVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGMLGE 239
            +  + + +   +   + ++D   R+G ++ A ++   +PV  D+  W++L+      G 
Sbjct: 382 SLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGN 441

Query: 240 VDTA 243
           V+ A
Sbjct: 442 VELA 445



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 35/79 (44%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F     K + SWN M+   A N  E +A+QL   +   N  P+ VT
Sbjct: 301 MYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVT 360

Query: 61  LTNVLPACARGHFLRPGKE 79
              VL AC     +   KE
Sbjct: 361 FVGVLTACNYSGLVDKAKE 379


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 153/420 (36%), Positives = 241/420 (57%), Gaps = 6/420 (1%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLE-LKALQLVREMPIHNEFPNSV 59
            +YA++    E   +F  + E + VSWN+ +   A+     L+AL+   EM      PN V
Sbjct: 601  LYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRV 660

Query: 60   TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
            T  N+L A +    L  G +IHA I++  +  D  + NAL   Y KC  +   + +F+  
Sbjct: 661  TFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRM 720

Query: 118  ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
               RDEVS+N +I GY  +    +++ L   M   G K D  +F   +SACA++A +++G
Sbjct: 721  SERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERG 780

Query: 178  KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
             E+H   +R  L + + V ++++D Y + G+ID A++ F+ +PV++  SWN++I GY   
Sbjct: 781  MEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARH 840

Query: 238  GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMH 296
            G    A+ +F  M++ G   D V+++ +L+ACSH GLV++G K+F  M +   + P   H
Sbjct: 841  GHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEH 900

Query: 297  YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA-CRIYG-NVELGAWAAEHLFM 354
            ++CMVDLLGRAG ++     IK +P++P+  IW  +LGA CR  G N ELG  AA+ L  
Sbjct: 901  FSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIE 960

Query: 355  LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            L+PQ+   Y+LLSNM+A  G W++  + R  M+    KK+ GCSWV  +D V  FV  D+
Sbjct: 961  LEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQ 1020



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 165/326 (50%), Gaps = 3/326 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K +    A  +F  +  K+ VSWN+M++    N    +A+     M  +   P++ +
Sbjct: 500 MYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFS 559

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV-FNIS 119
           + + L +C+   +L  G++IH    + GL+ D+ ++NAL  +YA+   +N  Q V F + 
Sbjct: 560 VISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMP 619

Query: 120 FRDEVSYNILIVGYSQ-TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             D+VS+N  I   ++  +   ++L  F EM   G + + V+F+  ++A ++ + +  G 
Sbjct: 620 EYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGH 679

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLILGYGML 237
           +IH + ++  +     + N++L FY +  +++    IF  +   +D  SWN++I GY   
Sbjct: 680 QIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHS 739

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G +  A++L   M + G   D  ++  +L+AC+    +E+G +         ++   +  
Sbjct: 740 GILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVG 799

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVE 323
           + +VD+  + G ++ A +  + +PV 
Sbjct: 800 SALVDMYAKCGKIDYASRFFELMPVR 825



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 156/335 (46%), Gaps = 14/335 (4%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F  + ++N V+ N ++   A+     +A ++ +EM    E  NS +L  +L     
Sbjct: 405 AKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEI-NSESLVVLLSTFTE 463

Query: 71  GHFL----RPGKEIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRDEV 124
              L    R G+E+HA + R GL +  + + NAL +MY KC  ++ A +VF +   +D V
Sbjct: 464 FSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTV 523

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           S+N +I G        E++S F  M+  GM     S +  +S+C++L  +  G++IHG  
Sbjct: 524 SWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEG 583

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT-- 242
            +  L   + V+N++L  Y  +  I+   K+F  +P  D  SWN+ I   G L + +   
Sbjct: 584 FKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFI---GALAKYEASV 640

Query: 243 --AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A+  F  M + G   + V++I IL A S   ++  G +    +   SV         +
Sbjct: 641 LQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENAL 700

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +   G+   MED   +   +    D   W +++  
Sbjct: 701 LAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISG 735



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 171/351 (48%), Gaps = 19/351 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y +      A  LF  + +KN+VSW+ +++ + QNR+  +A  L + +      PN   
Sbjct: 184 IYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFA 243

Query: 61  LTNVLPACAR--GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC-GCLNLAQNVFN 117
           + + L AC +     ++ G +IHA I +     D+ L+N L  MY+ C G ++ A  VF+
Sbjct: 244 VGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFD 303

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM-------KHDVVSFMGAISACA 169
            I FR+ V++N +I  Y +  D   +  LFS M++ G+       ++ + S + A  + A
Sbjct: 304 EIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLA 363

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
           +   +   + +  +     L   L+V +++++ + R G +D A  IF  +  +++ + N 
Sbjct: 364 DCGLVLLEQMLTRIEKSGFLRD-LYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNG 422

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS 289
           L++G     + + A  +F+ M+ D V  +  S + +L+  +    +++GK+   E+ A  
Sbjct: 423 LMVGLARQHQGEEAAKVFKEMK-DLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYL 481

Query: 290 VKPTEMHYA-----CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            +   +         +V++ G+   +++A  + + +P   D   W +++  
Sbjct: 482 FRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMP-SKDTVSWNSMISG 531



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 188 HLHTHL---------FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           HLH  L         F  N++++ Y R G +  A K+FD +P K+  SW+ LI GY    
Sbjct: 161 HLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNR 220

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
             D A +LF+ +   G+  +  +  + L AC   G
Sbjct: 221 MPDEACSLFKGVISSGLLPNHFAVGSALRACQQCG 255


>gi|297606990|ref|NP_001059320.2| Os07g0259400 [Oryza sativa Japonica Group]
 gi|255677648|dbj|BAF21234.2| Os07g0259400 [Oryza sativa Japonica Group]
          Length = 521

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 153/426 (35%), Positives = 237/426 (55%), Gaps = 13/426 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVT 60
           YAKS     A  +F     ++ V WN MV+ ++ + L  +   +   M   + FP +  T
Sbjct: 51  YAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGLVRECWDVFGSMR-RSGFPGDGFT 109

Query: 61  LTNVLPACARGH---------FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL 111
            + +L   A             L  G  +H  +IR GL+ D+ +  AL DMYAKCG +  
Sbjct: 110 FSALLSVRASSSSSCYDHANLLLVLGSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAE 169

Query: 112 AQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170
           A  VF+ +  R+ VS+N +IV Y +     E+  LF  M   G   D ++    +S+CA+
Sbjct: 170 ASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCAD 229

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           +AA  +  ++H  T+R+ L   L V N+++  Y ++G +  A + F  +   D  +W+++
Sbjct: 230 MAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSM 289

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-S 289
           +  +  LG   +AI+LF+ M + G+  D ++++ +L+ACSH GL+E G KYF  M  D  
Sbjct: 290 VSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFKYFLLMTRDYK 349

Query: 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAA 349
           + PT  H AC+VDLLGRAG + DA + + N+  + + ++ GA LGACR+ GN+E   WAA
Sbjct: 350 IDPTPQHLACLVDLLGRAGRIRDAYEFLVNMSCDANVDVIGAFLGACRMRGNIESAKWAA 409

Query: 350 EHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
             LF LKP     Y+L+SN YA AG W+E +KVR +M++    K PGCSW++    VQ F
Sbjct: 410 SRLFSLKPDDPINYLLISNTYAAAGDWNELAKVRSVMRNMCGNKVPGCSWIEIGGIVQTF 469

Query: 410 VVNDRM 415
           V ND M
Sbjct: 470 VSNDMM 475



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 108/214 (50%), Gaps = 8/214 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  + AEAS +F  +  +N VSWNA++  + ++    +A  L   M  H   P+ +T
Sbjct: 160 MYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELT 219

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L ++L +CA         ++HA  +R+GL   L + NAL   Y K G +  A+  F  I 
Sbjct: 220 LASLLSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKNGFVQEAKRTFGMIH 279

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V+++ ++  ++       ++ LF  M   G++ D ++F+G +SAC++   I+ G +
Sbjct: 280 NPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFK 339

Query: 180 IHGVTIRKH----LHTHLFVANSILDFYTRSGRI 209
              +  R +       HL     ++D   R+GRI
Sbjct: 340 YFLLMTRDYKIDPTPQHL---ACLVDLLGRAGRI 370



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%)

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + ++    +   VA ++ D Y +SG +D A ++FD  P++D   WN ++  Y   G 
Sbjct: 28  VHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGL 87

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILT 267
           V    ++F +MR  G   D  ++ A+L+
Sbjct: 88  VRECWDVFGSMRRSGFPGDGFTFSALLS 115


>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
 gi|194688792|gb|ACF78480.1| unknown [Zea mays]
          Length = 706

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/416 (34%), Positives = 236/416 (56%), Gaps = 2/416 (0%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           K+     A  +F  I + ++ +WN +++ + Q  L  + + L R M   N  P+  TL  
Sbjct: 263 KARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAV 322

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRD 122
           +L +C+R      GK++H+  +R  L+ D+F+ + L D+Y+KCG + +A  +FN+ + RD
Sbjct: 323 ILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERD 382

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            V +N +I G +  S   E+     +MR  GM     S+   I+ CA L++I QG+++H 
Sbjct: 383 VVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHA 442

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             ++     +++V  S++D Y +SG +D A   F+C+ VK+  +WN +I GY   G  + 
Sbjct: 443 QVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEK 502

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMV 301
           A+ LFE M       D V++IA+LT CSH GLV++   +F+ M+++  + P   HY C++
Sbjct: 503 AVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLI 562

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361
           D L RA    +   +I  +P + D  +W  LL AC ++ N ELG ++A+HLF L P++  
Sbjct: 563 DALARAARFAEVEAVIGKMPYKDDPILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPS 622

Query: 362 YYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKT 417
            Y+LLSN+YA  G+  +AS VR LM SR   K  G SWV  +D  + F+V D + T
Sbjct: 623 PYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVNHKDGSRAFMVADDLGT 678



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 173/340 (50%), Gaps = 16/340 (4%)

Query: 18  IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPG 77
           + ++N VSWN ++A  A++    +AL++ + M      P + TL +VL AC     L  G
Sbjct: 1   MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDG 60

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           +  H   ++ GL+   F+ N L  MY KCG +  A  +F+ +   +EVS+  ++ G +Q 
Sbjct: 61  RRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQG 120

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACA-------NLA-AIKQGKEIHGVTIRKH 188
               ++L LF+ M   G++ D V+    + ACA       N+A AI+  + IH + +RK 
Sbjct: 121 GAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKG 180

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
             +   V NS++D Y +  ++D A K+F+ L      SWN LI GYG LG  + A+ + E
Sbjct: 181 FGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLE 240

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            M+E G   + V+Y  +L +C     V   +  FD++     KP+   +  ++   G+  
Sbjct: 241 FMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIP----KPSVTTWNTLLSGYGQEE 296

Query: 309 LMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELG 345
           L ++ + L + +    V+PD      +L +C   GN ELG
Sbjct: 297 LHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELG 336



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 124/240 (51%), Gaps = 15/240 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K  +   A  +F+ + E+++V WN+M++  A + L  +A   +++M  +  FP   +
Sbjct: 361 IYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESS 420

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +++  CAR   +  G+++HA++++ G + ++++  +L DMYAK G ++ A+  FN + 
Sbjct: 421 YASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMI 480

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
            ++ V++N +I GY+Q     +++ LF  M     K D V+F+  ++ C++   + +   
Sbjct: 481 VKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVT 540

Query: 178 -----KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
                +  +G+T     +T L      +D   R+ R      +   +P KD    W  L+
Sbjct: 541 FFNSMESNYGITPLVEHYTCL------IDALARAARFAEVEAVIGKMPYKDDPILWEVLL 594



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 47/215 (21%)

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P +++ SWNT+I      G    A+ +++ M ++G+     +  ++L+AC     ++ G
Sbjct: 1   MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDG 60

Query: 279 KKY--------FDEMQ----------------ADSVK-------PTEMHYACMVDLLGRA 307
           ++          D  Q                AD+V+       P E+ +  M+  L + 
Sbjct: 61  RRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQG 120

Query: 308 GLMEDAVKLIKNLP-----VEPDA--NIWGALLGACRIYGNVELGAWAAEHLFML----- 355
           G ++DA++L   +      V+P A  ++ GA   AC    NV      A+ +  L     
Sbjct: 121 GAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKG 180

Query: 356 --KPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
               QH G  ++  ++YA+  K DEA KV E + S
Sbjct: 181 FGSDQHVGNSLV--DLYAKGMKMDEAIKVFESLSS 213


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 157/447 (35%), Positives = 249/447 (55%), Gaps = 34/447 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK     EA  +F+++ ++N VSW  ++    Q     K+++L  +M       +   
Sbjct: 314 LYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFA 373

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  ++  C     L  G+++H+  ++ G N  + ++N+L  +YAKCG L  A+ VF+ +S
Sbjct: 374 LATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS 433

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMR---------LLG--MKH------------ 156
            RD VS+  +I  YSQ  +  ++   F  M          +LG  ++H            
Sbjct: 434 ERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSA 493

Query: 157 ---------DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
                    D V+++     CA++ A K G +I G T++  L  ++ VAN+ +  Y++ G
Sbjct: 494 MLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCG 553

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
           RI  A K+FD L  KD  SWN +I GY   G    A   F+ M   G   D +SY+A+L+
Sbjct: 554 RISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLS 613

Query: 268 ACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
            CSH GLV++GK YFD M +   + P   H++CMVDLLGRAG + +A  LI  +P++P A
Sbjct: 614 GCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTA 673

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
            +WGALL AC+I+GN EL   AA+H+F L     G Y+LL+ +Y++AGK D++++VR+LM
Sbjct: 674 EVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLM 733

Query: 387 KSREAKKNPGCSWVQTRDEVQDFVVND 413
           + +  KKNPG SW++  ++V  F  +D
Sbjct: 734 RDKGIKKNPGYSWMEVENKVHVFKADD 760



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 156/301 (51%), Gaps = 6/301 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A   F ++AE+++VSWN M+A  +Q+    +AL LV EM       +S T 
Sbjct: 214 YAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTY 273

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T+ L ACAR   L  GK++HA++IR     D ++ +AL ++YAKCG    A+ VFN +  
Sbjct: 274 TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQD 333

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+ +LI G  Q    S+S+ LF++MR   M  D  +    IS C N   +  G+++
Sbjct: 334 RNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQL 393

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H + ++   +  + V+NS++  Y + G +  A  +F  +  +D  SW ++I  Y  +G +
Sbjct: 394 HSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNI 453

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             A   F+ M       + +++ A+L A    G  E G K +  M +   V P  + Y  
Sbjct: 454 IKAREFFDGM----ATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVT 509

Query: 300 M 300
           +
Sbjct: 510 L 510



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 169/392 (43%), Gaps = 70/392 (17%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSVT 60
           YAK    ++A  LF  +  +++ SWN +++ + Q R  L  L+    M    +  PN+ T
Sbjct: 81  YAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFT 140

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF----LTNALTDMYAKCGCLNLAQNVF 116
              V+ +C         +E+  +++     FD +    +  AL DM+ +CG ++ A  +F
Sbjct: 141 FCCVMKSCGA----LGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLF 196

Query: 117 --------------------------------NISFRDEVSYNILIVGYSQTSDCSESLS 144
                                           +++ RD VS+N++I   SQ+    E+L 
Sbjct: 197 SQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALG 256

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
           L  EM   G++ D  ++  +++ACA L ++  GK++H   IR       +VA+++++ Y 
Sbjct: 257 LVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYA 316

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           + G    A ++F+ L  ++S SW  LI G         ++ LF  MR + +  D  +   
Sbjct: 317 KCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALAT 376

Query: 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC--------------MVDLLGRAGLM 310
           +++ C            F+ M  D     ++H  C              ++ L  + G +
Sbjct: 377 LISGC------------FNRM--DLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDL 422

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
           ++A  +  ++  E D   W +++ A    GN+
Sbjct: 423 QNAEFVFSSMS-ERDIVSWTSMITAYSQIGNI 453



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 122/303 (40%), Gaps = 43/303 (14%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L + L +C     L   + +H R++  GL   +FL N L   Y  CG L+ A+ +     
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 66

Query: 121 RDE--VSYNILIVGYSQTSDCSESLSLFSEM-------------------RLLGMKHDVV 159
           ++   +++NI++ GY++    S++  LF  M                   R L      V
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 160 S-------------FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
           S             F   + +C  L   +   ++ G+  +        V  +++D + R 
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           G +D A+++F  +        N+++ GY  L  +D AI  FE M E     D VS+  ++
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAE----RDVVSWNMMI 242

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM----EDAVKLIKNLP- 321
            A S  G V +      EM    V+     Y   +    R   +    +   K+I++LP 
Sbjct: 243 AALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQ 302

Query: 322 VEP 324
           ++P
Sbjct: 303 IDP 305



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 85/212 (40%), Gaps = 37/212 (17%)

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL----------------------- 200
           A+ +C +  A+   + +HG  +   L + +F+ N++L                       
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEP 69

Query: 201 ---------DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
                    + Y + G +  A ++FD +P +D ASWNTL+ GY         +  F +M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 252 EDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGL 309
             G    +  ++  ++ +C   G  E   +      + D     ++  A +VD+  R G 
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETA-LVDMFVRCGY 188

Query: 310 MEDAVKLIKNLPVEPDANIWGALL-GACRIYG 340
           ++ A +L   +   P      ++L G  ++YG
Sbjct: 189 VDFASRLFSQIE-RPTIFCRNSMLAGYAKLYG 219


>gi|297833250|ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330347|gb|EFH60766.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 676

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/421 (34%), Positives = 241/421 (57%), Gaps = 12/421 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLE---LKALQLVREMPIHNEFPNS 58
           Y K        ++F  +A +N+++W A+++   +N L    L+   L+R   +H   PNS
Sbjct: 200 YFKCGCSVSGRWVFSEMAHRNVITWTAVISGLIENELHEDGLRLFCLMRRGLVH---PNS 256

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
           VT  + L AC+    +  G++IHA + + G+  +L + +AL DMY+KCG +  A  +F  
Sbjct: 257 VTYLSALAACSGSQMIVEGQQIHALLWKFGIESELCIESALMDMYSKCGSIEDAWKIFES 316

Query: 119 SFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD--VVSFMGAISACANLAAIK 175
           S   DEVS  +++VG +Q     E++  F  M   G++ D  VVS +  +S   N  ++ 
Sbjct: 317 SQEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAILGVSFVDN--SLG 374

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK++H + I++    + FV N +++ Y++ G +  +  +F  +P ++  SWN++I  + 
Sbjct: 375 LGKQLHSLVIKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFA 434

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTE 294
             G    A+ L+E M    V    V+++++L ACSH GL++KG++  +EM +   +KP  
Sbjct: 435 RHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIKPRT 494

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HY C++D+LGRAGLM++A   I +LP++PD  IW ALLGAC  +G+ E+G +AAE LF 
Sbjct: 495 EHYTCIIDMLGRAGLMKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFE 554

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             P     +IL++N+Y+  GKW E +K  + MK     K  G SW++   +   FVV D+
Sbjct: 555 TAPDSSAAHILMANIYSSRGKWKERAKTIKRMKEMGVTKETGISWIEMEKKTHSFVVEDK 614

Query: 415 M 415
           M
Sbjct: 615 M 615



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 2/267 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K  +  +A  LF  +  ++++S N +   F +NR       L++ M     F +  T
Sbjct: 99  LYVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLLKRMLGSGGF-DQAT 157

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           LT VL  C    F    K IHA  I  G + ++ + N L   Y KCGC    + VF+ ++
Sbjct: 158 LTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRWVFSEMA 217

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ +++  +I G  +     + L LF  MR   +  + V+++ A++AC+    I +G++
Sbjct: 218 HRNVITWTAVISGLIENELHEDGLRLFCLMRRGLVHPNSVTYLSALAACSGSQMIVEGQQ 277

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH +  +  + + L + ++++D Y++ G I+ A KIF+     D  S   +++G    G 
Sbjct: 278 IHALLWKFGIESELCIESALMDMYSKCGSIEDAWKIFESSQEVDEVSMTVILVGLAQNGS 337

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAIL 266
            + AI  F  M + GV  D     AIL
Sbjct: 338 EEEAIQFFIRMLQAGVEIDANVVSAIL 364



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 161/398 (40%), Gaps = 57/398 (14%)

Query: 45  LVREMP---IHNEFPNSVTLTNVLPACAR-GHFLRPGKEIHARIIRKGLNFD-------- 92
           L+R+ P   +     N V ++ +L  C R G F   G  +HA I++    FD        
Sbjct: 28  LIRQSPSYQVSTFLLNHVDMSLLLSICGREGWFPYLGPCLHASIVKNPEFFDPVDADIHR 87

Query: 93  --LFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
             L + N+L  +Y KCG L  A  +F+ +  RD +S NI+  G+ +  +      L    
Sbjct: 88  NALVVWNSLLSLYVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLLK-- 145

Query: 150 RLLGM-KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           R+LG    D  +    +S C         K IH + I       + V N ++  Y + G 
Sbjct: 146 RMLGSGGFDQATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGC 205

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
                 +F  +  ++  +W  +I G       +  + LF  MR   V  + V+Y++ L A
Sbjct: 206 SVSGRWVFSEMAHRNVITWTAVISGLIENELHEDGLRLFCLMRRGLVHPNSVTYLSALAA 265

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP------- 321
           CS   ++ +G++    +    ++      + ++D+  + G +EDA K+ ++         
Sbjct: 266 CSGSQMIVEGQQIHALLWKFGIESELCIESALMDMYSKCGSIEDAWKIFESSQEVDEVSM 325

Query: 322 ---------------------------VEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
                                      VE DAN+  A+LG   +  ++ LG     H  +
Sbjct: 326 TVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAILGVSFVDNSLGLGKQL--HSLV 383

Query: 355 LKPQHCGYYIL---LSNMYAEAGKWDEASKVRELMKSR 389
           +K + CG   +   L NMY++ G   ++  V   M  R
Sbjct: 384 IKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKR 421



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 45/80 (56%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     ++  +F  + ++N VSWN+M+A FA++   L AL+L  EM      P  VT
Sbjct: 401 MYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVT 460

Query: 61  LTNVLPACARGHFLRPGKEI 80
             ++L AC+    +  G+E+
Sbjct: 461 FLSLLHACSHVGLIDKGREL 480


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 157/447 (35%), Positives = 249/447 (55%), Gaps = 34/447 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK     EA  +F+++ ++N VSW  ++    Q     K+++L  +M       +   
Sbjct: 314 LYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFA 373

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  ++  C     L  G+++H+  ++ G N  + ++N+L  +YAKCG L  A+ VF+ +S
Sbjct: 374 LATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS 433

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMR---------LLG--MKH------------ 156
            RD VS+  +I  YSQ  +  ++   F  M          +LG  ++H            
Sbjct: 434 ERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSA 493

Query: 157 ---------DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
                    D V+++     CA++ A K G +I G T++  L  ++ VAN+ +  Y++ G
Sbjct: 494 MLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCG 553

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
           RI  A K+FD L  KD  SWN +I GY   G    A   F+ M   G   D +SY+A+L+
Sbjct: 554 RISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLS 613

Query: 268 ACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
            CSH GLV++GK YFD M +   + P   H++CMVDLLGRAG + +A  LI  +P++P A
Sbjct: 614 GCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTA 673

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
            +WGALL AC+I+GN EL   AA+H+F L     G Y+LL+ +Y++AGK D++++VR+LM
Sbjct: 674 EVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLM 733

Query: 387 KSREAKKNPGCSWVQTRDEVQDFVVND 413
           + +  KKNPG SW++  ++V  F  +D
Sbjct: 734 RDKGIKKNPGYSWMEVENKVHVFKADD 760



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 156/301 (51%), Gaps = 6/301 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A   F ++AE+++VSWN M+A  +Q+    +AL LV EM       +S T 
Sbjct: 214 YAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTY 273

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T+ L ACAR   L  GK++HA++IR     D ++ +AL ++YAKCG    A+ VFN +  
Sbjct: 274 TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQD 333

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+ +LI G  Q    S+S+ LF++MR   M  D  +    IS C N   +  G+++
Sbjct: 334 RNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQL 393

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H + ++   +  + V+NS++  Y + G +  A  +F  +  +D  SW ++I  Y  +G +
Sbjct: 394 HSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNI 453

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             A   F+ M       + +++ A+L A    G  E G K +  M +   V P  + Y  
Sbjct: 454 IKAREFFDGMDT----RNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVT 509

Query: 300 M 300
           +
Sbjct: 510 L 510



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 169/392 (43%), Gaps = 70/392 (17%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSVT 60
           YAK    ++A  LF  +  +++ SWN +++ + Q R  L  L+    M    +  PN+ T
Sbjct: 81  YAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFT 140

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF----LTNALTDMYAKCGCLNLAQNVF 116
              V+ +C         +E+  +++     FD +    +  AL DM+ +CG ++ A  +F
Sbjct: 141 FCCVMKSCGA----LGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLF 196

Query: 117 --------------------------------NISFRDEVSYNILIVGYSQTSDCSESLS 144
                                           +++ RD VS+N++I   SQ+    E+L 
Sbjct: 197 SQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALG 256

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
           L  EM   G++ D  ++  +++ACA L ++  GK++H   IR       +VA+++++ Y 
Sbjct: 257 LVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYA 316

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           + G    A ++F+ L  ++S SW  LI G         ++ LF  MR + +  D  +   
Sbjct: 317 KCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALAT 376

Query: 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC--------------MVDLLGRAGLM 310
           +++ C            F+ M  D     ++H  C              ++ L  + G +
Sbjct: 377 LISGC------------FNRM--DLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDL 422

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
           ++A  +  ++  E D   W +++ A    GN+
Sbjct: 423 QNAEFVFSSMS-ERDIVSWTSMITAYSQIGNI 453



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 122/303 (40%), Gaps = 43/303 (14%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L + L +C     L   + +H R++  GL   +FL N L   Y  CG L+ A+ +     
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADI 66

Query: 121 RDE--VSYNILIVGYSQTSDCSESLSLFSEM-------------------RLLGMKHDVV 159
           ++   +++NI++ GY++    S++  LF  M                   R L      V
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 160 S-------------FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
           S             F   + +C  L   +   ++ G+  +        V  +++D + R 
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           G +D A+++F  +        N+++ GY  L  +D AI  FE M E     D VS+  ++
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAE----RDVVSWNMMI 242

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM----EDAVKLIKNLP- 321
            A S  G V +      EM    V+     Y   +    R   +    +   K+I++LP 
Sbjct: 243 AALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQ 302

Query: 322 VEP 324
           ++P
Sbjct: 303 IDP 305



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 85/212 (40%), Gaps = 37/212 (17%)

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL----------------------- 200
           A+ +C +  A+   + +HG  +   L + +F+ N++L                       
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEP 69

Query: 201 ---------DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
                    + Y + G +  A ++FD +P +D ASWNTL+ GY         +  F +M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 252 EDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGL 309
             G    +  ++  ++ +C   G  E   +      + D     ++  A +VD+  R G 
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETA-LVDMFVRCGY 188

Query: 310 MEDAVKLIKNLPVEPDANIWGALL-GACRIYG 340
           ++ A +L   +   P      ++L G  ++YG
Sbjct: 189 VDFASRLFSQIE-RPTIFCRNSMLAGYAKLYG 219


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 152/425 (35%), Positives = 241/425 (56%), Gaps = 14/425 (3%)

Query: 2   YAKSSRPAEASYLFHNI-AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y+K S   EA  LF    A  N+V+W AM+  F QN    KA+ L  +M      PN  T
Sbjct: 351 YSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFT 410

Query: 61  LTNVLPACARGHFLRPGK---EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF- 116
            + VL         +P     ++HA+II+        +  AL D Y K G +  +  VF 
Sbjct: 411 YSTVLAG-------KPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFY 463

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA-IK 175
           +I  +D V+++ ++ G +QT D  +++ +F ++   G+K +  +F   I+AC++ AA ++
Sbjct: 464 SIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVE 523

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK+IH   ++      L V++++L  Y++ G I+ A K+F     +D  SWN++I GYG
Sbjct: 524 HGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYG 583

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
             G+   A+ +F+ M+  G+  D V++I +LTAC+H GLVE+G+KYF+ M  D  +    
Sbjct: 584 QHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKX 643

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HY+CMVDL  RAG+ + A+ +I  +P      IW  LL ACR++ N+ELG  AAE L  
Sbjct: 644 EHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVS 703

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           L+P     Y+LLSN++A AG W+E + VR+LM  R+ KK  GCSW++ ++ +  F+  D 
Sbjct: 704 LQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDV 763

Query: 415 MKTFT 419
              F+
Sbjct: 764 SHPFS 768



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 157/341 (46%), Gaps = 19/341 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+    +   +F  +  KN+VSW ++++ +A+N L  + + L+ +M +    PN  T
Sbjct: 148 MYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFT 207

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL A A    +  G ++HA I++ G  F  F+ NAL  MY K   +  A+ VF+ + 
Sbjct: 208 FATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMV 267

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++NI+I GY+      E   +F  MRL G+K     F  A+  C+    +   K+
Sbjct: 268 VRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQ 327

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL-PVKDSASWNTLILGYGMLG 238
           +H   ++        +  +++  Y++   +D A K+F       +  +W  +I G+    
Sbjct: 328 LHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNN 387

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK------P 292
               A++LF  M  +GV  +  +Y  +L          K      ++ A  +K      P
Sbjct: 388 NNKKAVDLFCQMSREGVRPNHFTYSTVLAG--------KPSSLLSQLHAQIIKAYYEKVP 439

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +      ++D   + G + ++ ++  ++P + D   W A+L
Sbjct: 440 SVA--TALLDAYVKTGNVVESARVFYSIPAK-DIVAWSAML 477



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 159/342 (46%), Gaps = 23/342 (6%)

Query: 6   SRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVL 65
           SRP  A  LF     K+I  +N ++ +F++N  + +AL L +++       + +TL+  L
Sbjct: 52  SRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCAL 111

Query: 66  PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEV 124
             C        G+++H + ++ G   D+ +  +L DMY K       + +F+ +  ++ V
Sbjct: 112 KVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVV 171

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           S+  L+ GY++     E + L ++M++ G+  +  +F   + A A+ + I+ G ++H + 
Sbjct: 172 SWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMI 231

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
           ++       FV N+++  Y +S  +  A  +FD + V+DS +WN +I GY  +G      
Sbjct: 232 VKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGF 291

Query: 245 NLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQADSVKPT 293
            +F  MR  GV      +   L  CS           H G+V+ G ++  +++       
Sbjct: 292 QMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT------ 345

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
               A MV    +   +++A KL        +   W A++G 
Sbjct: 346 ----ALMVT-YSKCSSVDEAFKLFSMADAAHNVVTWTAMIGG 382



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 99/249 (39%), Gaps = 49/249 (19%)

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
           I+  LH H F+ +  L F +   R   A+++FD  P+KD + +N L+  +        A+
Sbjct: 30  IKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREAL 89

Query: 245 NLFEAMREDGVGYDPVSYIAILTACS----------------HGGLV------------- 275
           +LF+ +   G+G D ++    L  C                   G +             
Sbjct: 90  HLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMY 149

Query: 276 ------EKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE---PD- 325
                 E G+  FDEM   +V    + +  ++    R GL ++ + LI  + +E   P+ 
Sbjct: 150 MKTEDFEDGRGIFDEMGIKNV----VSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNG 205

Query: 326 ---ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382
              A + GAL     I G V++ A   ++ F      C   I    MY ++    +A  V
Sbjct: 206 FTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALIC---MYLKSEMVGDAEAV 262

Query: 383 RELMKSREA 391
            + M  R++
Sbjct: 263 FDSMVVRDS 271



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F    E++IVSWN+M+  + Q+    KAL++ + M       + VT
Sbjct: 550 MYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVT 609

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLT--NALTDMYAKCGCLNLAQNVFN 117
              VL AC     +  G E +  I+ K  + D      + + D+Y++ G  + A ++ N
Sbjct: 610 FIGVLTACTHAGLVEEG-EKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIIN 667


>gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 607

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/418 (34%), Positives = 252/418 (60%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K     +A  LF  + EK+ V WN M+A +A+     + L+L + M       +  T
Sbjct: 155 LYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFT 214

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V+ + A+   +  GK+ HA I+R G +  + + N+L DMY +C  L+ A  +FN ++
Sbjct: 215 ALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMT 274

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  +S++ +I GY +      +LSLFS+M+  G++ D V  +  + A  ++ A++  K 
Sbjct: 275 DKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKY 334

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNTLILGYGML 237
           +HG +++  L +   +  ++L  Y + G I++A ++F+   +  KD   WN++I  +   
Sbjct: 335 LHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANH 394

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMH 296
           G+      L+  M+      D V+++ +LTAC + GLVEKGK++F EM ++   +P++ H
Sbjct: 395 GDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEH 454

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YACMV+LLGRAGL+ +A +L+KN+P++PDA +WG LL AC+++   +L  +AAE L  ++
Sbjct: 455 YACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLINME 514

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P++ G YILLSN+YA AGKWD  +K+R  ++++  KK PGCSW++    V +F V D+
Sbjct: 515 PRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLEINGHVTEFRVADQ 572



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 125/281 (44%), Gaps = 6/281 (2%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF--LTNALTDMYAKCGCLNLAQ 113
           P+  T   VL +C+    +  G+ IH  +++  L FDLF  +  AL +MY +C     A 
Sbjct: 8   PDEETYPFVLRSCSSFSNVGFGRTIHGYLVK--LGFDLFDVVATALAEMYEECIEFENAH 65

Query: 114 NVFNISFRDEVSYNILIVGYSQTSDCSESL-SLFSEMRLLGMKHDVVSFMGAISACANLA 172
            +F+     ++ +   +      +D  E +  +F  M    +  D  +F   +   A L 
Sbjct: 66  QLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLN 125

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           +I+  K +H + I   L   L V  ++L  Y++   +  A K+FD +P KD   WN +I 
Sbjct: 126 SIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIA 185

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
            Y   G+    + LF++M   G+  D  + + ++++ +    V+ GK+    +  +    
Sbjct: 186 AYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDS 245

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
               +  ++D+     +++ A K+  N   +     W A++
Sbjct: 246 QVSVHNSLIDMYCECKILDSACKIF-NWMTDKSVISWSAMI 285


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 152/447 (34%), Positives = 254/447 (56%), Gaps = 34/447 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK     EA  +F+++ ++N V+W  ++A F Q+    ++++L  +M       +   
Sbjct: 314 LYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFA 373

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  ++  C     L  G+++H+  ++ G    + ++N+L  MYAKC  L  A+++F  ++
Sbjct: 374 LATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMN 433

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMR---------LLG----------------- 153
            +D VS+  +I  +SQ  + +++   F  M          +LG                 
Sbjct: 434 EKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNV 493

Query: 154 ------MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
                 ++ D V+++     CA+L A K G +I G T++  L     VAN+++  Y++ G
Sbjct: 494 MLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCG 553

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
           RI  A K+FD L VKD  SWN +I GY   G    AI +F+ + + G   D +SY+A+L+
Sbjct: 554 RILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLS 613

Query: 268 ACSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
            CSH GLV++GK YFD M+   ++ P   H++CMVDLLGRAG + +A  LI  +P++P A
Sbjct: 614 GCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTA 673

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
            +WGALL AC+I+GN EL   AA+H+F L     G Y+L++ +YA+AGK D+++++R+LM
Sbjct: 674 EVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLM 733

Query: 387 KSREAKKNPGCSWVQTRDEVQDFVVND 413
           + +  KKNPG SW++  ++V  F  +D
Sbjct: 734 RDKGIKKNPGYSWMEVNNKVHVFKADD 760



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 160/301 (53%), Gaps = 6/301 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K+     A  LF ++ E+++VSWN MV+  +Q+    +AL +V +M       +S T 
Sbjct: 214 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 273

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T+ L ACAR   LR GK++HA++IR     D ++ +AL ++YAKCGC   A+ VFN +  
Sbjct: 274 TSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHD 333

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ V++ +LI G+ Q    +ES+ LF++MR   M  D  +    IS C +   +  G+++
Sbjct: 334 RNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQL 393

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H + ++      + V+NS++  Y +   +  A  IF  +  KD  SW ++I  +  +G +
Sbjct: 394 HSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNI 453

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             A   F+ M    V    +++ A+L A    G  E G + ++ M ++  V+P  + Y  
Sbjct: 454 AKAREFFDGMSTKNV----ITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVT 509

Query: 300 M 300
           +
Sbjct: 510 L 510



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 141/301 (46%), Gaps = 33/301 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSVT 60
           Y K  R ++A  LF  +  +++ SWN +++ + Q++  L +L+    M    +  PN+ T
Sbjct: 81  YVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFT 140

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---- 116
               + +C          ++   + + G   D  +  AL DM+ +CG ++LA  +F    
Sbjct: 141 FAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIK 200

Query: 117 ----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                       ++  RD VS+N+++   SQ+    E+L +  +
Sbjct: 201 EPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVD 260

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M+  G++ D  ++  +++ACA L++++ GK++H   IR       +VA+++++ Y + G 
Sbjct: 261 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGC 320

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
              A  +F+ L  +++ +W  LI G+   G    ++ LF  MR + +  D  +   +++ 
Sbjct: 321 FKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISG 380

Query: 269 C 269
           C
Sbjct: 381 C 381



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 122/303 (40%), Gaps = 43/303 (14%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---- 116
             + L +C     L   + +H R++  GL   +FL N L   Y  CG L  A+ +     
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDI 66

Query: 117 -----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
                                         +  RD  S+N L+ GY Q+     SL  F 
Sbjct: 67  AHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFV 126

Query: 148 EMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
            M   G    +  +F  A+ +C  L       ++ G+  +        VA +++D + R 
Sbjct: 127 SMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRC 186

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           G +DLA+++F  +        N++++GY     VD A+ LF++M E     D VS+  ++
Sbjct: 187 GTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPE----RDVVSWNMMV 242

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL----IKNLP- 321
           +A S  G V +      +MQ+  V+     Y   +    R   +    +L    I+NLP 
Sbjct: 243 SALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPC 302

Query: 322 VEP 324
           ++P
Sbjct: 303 IDP 305



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 5/154 (3%)

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
           H ++   N +L+ Y + GR+  A ++F  +P +D ASWNTL+ GY    +   ++  F +
Sbjct: 68  HPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVS 127

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEK--GKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
           M   G    P ++       S G L E+    +    +Q    +      A +VD+  R 
Sbjct: 128 MHRSG-DSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRC 186

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALL-GACRIYG 340
           G ++ A +L   +  EP      ++L G  + YG
Sbjct: 187 GTVDLASRLFVRIK-EPTIFCRNSMLVGYVKTYG 219


>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
          Length = 807

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/416 (34%), Positives = 236/416 (56%), Gaps = 2/416 (0%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           K+     A  +F  I + ++ +WN +++ + Q  L  + + L R M   N  P+  TL  
Sbjct: 364 KARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAV 423

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRD 122
           +L +C+R      GK++H+  +R  L+ D+F+ + L D+Y+KCG + +A  +FN+ + RD
Sbjct: 424 ILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERD 483

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            V +N +I G +  S   E+     +MR  GM     S+   I+ CA L++I QG+++H 
Sbjct: 484 VVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHA 543

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             ++     +++V  S++D Y +SG +D A   F+C+ VK+  +WN +I GY   G  + 
Sbjct: 544 QVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEK 603

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMV 301
           A+ LFE M       D V++IA+LT CSH GLV++   +F+ M+++  + P   HY C++
Sbjct: 604 AVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLI 663

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361
           D L RA    +   +I  +P + D  +W  LL AC ++ N ELG ++A+HLF L P++  
Sbjct: 664 DALARAARFAEVEAVIGKMPYKDDPILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPS 723

Query: 362 YYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKT 417
            Y+LLSN+YA  G+  +AS VR LM SR   K  G SWV  +D  + F+V D + T
Sbjct: 724 PYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVNHKDGSRAFMVADDLGT 779



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 176/349 (50%), Gaps = 16/349 (4%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           A A  L   + ++N VSWN ++A  A++    +AL++ + M      P + TL +VL AC
Sbjct: 93  AAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSAC 152

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
                L  G+  H   ++ GL+   F+ N L  MY KCG +  A  +F+ +   +EVS+ 
Sbjct: 153 GAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFT 212

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA-------NLA-AIKQGKE 179
            ++ G +Q     ++L LF+ M   G++ D V+    + ACA       N+A AI+  + 
Sbjct: 213 AMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQS 272

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH + +RK   +   V NS++D Y +  ++D A K+F+ L      SWN LI GYG LG 
Sbjct: 273 IHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGC 332

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ + E M+E G   + V+Y  +L +C     V   +  FD++     KP+   +  
Sbjct: 333 YERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIP----KPSVTTWNT 388

Query: 300 MVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELG 345
           ++   G+  L ++ + L + +    V+PD      +L +C   GN ELG
Sbjct: 389 LLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELG 437



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 130/283 (45%), Gaps = 40/283 (14%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYA-------------------------------KC 106
           K  HAR++  GL  D FL N L ++Y+                               + 
Sbjct: 30  KAAHARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACRA 89

Query: 107 GCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI 165
           G L  A+++   +  R+ VS+N +I   +++    E+L ++  M   G+     +    +
Sbjct: 90  GDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVL 149

Query: 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
           SAC  +AA+  G+  HG+ ++  L  H FV N +L  YT+ G +  A ++FD +P  +  
Sbjct: 150 SACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEV 209

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL----VEKGKKY 281
           S+  ++ G    G VD A+ LF  M   G+  DPV+  ++L AC+        V +  + 
Sbjct: 210 SFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQL 269

Query: 282 FDEMQADSVKP---TEMHYA-CMVDLLGRAGLMEDAVKLIKNL 320
              + A  V+    ++ H    +VDL  +   M++A+K+ ++L
Sbjct: 270 AQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESL 312



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 124/240 (51%), Gaps = 15/240 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K  +   A  +F+ + E+++V WN+M++  A + L  +A   +++M  +  FP   +
Sbjct: 462 IYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESS 521

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +++  CAR   +  G+++HA++++ G + ++++  +L DMYAK G ++ A+  FN + 
Sbjct: 522 YASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMI 581

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
            ++ V++N +I GY+Q     +++ LF  M     K D V+F+  ++ C++   + +   
Sbjct: 582 VKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVT 641

Query: 178 -----KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
                +  +G+T     +T L      +D   R+ R      +   +P KD    W  L+
Sbjct: 642 FFNSMESNYGITPLVEHYTCL------IDALARAARFAEVEAVIGKMPYKDDPILWEVLL 695



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 47/244 (19%)

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
           H +++  N+ +    R+G +  A  +   +P +++ SWNT+I      G    A+ +++ 
Sbjct: 73  HPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQG 132

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKY--------FDEMQ--------------- 286
           M ++G+     +  ++L+AC     ++ G++          D  Q               
Sbjct: 133 MLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGS 192

Query: 287 -ADSVK-------PTEMHYACMVDLLGRAGLMEDAVKLIKNLP-----VEPDA--NIWGA 331
            AD+V+       P E+ +  M+  L + G ++DA++L   +      V+P A  ++ GA
Sbjct: 193 VADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGA 252

Query: 332 LLGACRIYGNVELGAWAAEHLFML-------KPQHCGYYILLSNMYAEAGKWDEASKVRE 384
              AC    NV      A+ +  L         QH G  ++  ++YA+  K DEA KV E
Sbjct: 253 CAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLV--DLYAKGMKMDEAIKVFE 310

Query: 385 LMKS 388
            + S
Sbjct: 311 SLSS 314


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 149/446 (33%), Positives = 242/446 (54%), Gaps = 34/446 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A  LF  + EK++VSWN MV   AQ     +AL+   E        N  + 
Sbjct: 136 YAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSF 195

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL  C +   +   +++H +I+  G   ++ L++++ D Y KCG +  A+ +F+ +S 
Sbjct: 196 AGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSA 255

Query: 121 RD-------------------------------EVSYNILIVGYSQTSDCSESLSLFSEM 149
           RD                                VS+  LI GY++     ++L LF++M
Sbjct: 256 RDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKM 315

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
            L  ++ D  +F   + ACA++A++K GK+IH   +R +   +  V ++++D Y++ G +
Sbjct: 316 MLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSL 375

Query: 210 DLANKIFDCLPVK-DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
            +  K+FD +  K D   WNT+I      G  + AI + + M   G   D ++++ IL A
Sbjct: 376 GIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNA 435

Query: 269 CSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           CSH GLV++G  +F+ M  D  + P++ HYAC++DLLGRAG  E+ +  ++ +P +PD  
Sbjct: 436 CSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDR 495

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           +W ALLG CRI+G++ELG  AAE L  L+PQ    Y+LLS++YA  G+W+   KVR+LM 
Sbjct: 496 VWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMN 555

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVND 413
            R+ KK    SW++  ++V  F V+D
Sbjct: 556 ERQVKKERAISWLEIENKVHSFSVSD 581



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 135/275 (49%), Gaps = 37/275 (13%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNV 115
           +S TL ++L  CA    LR GK +H  +   GL     FL+N L +MYAKCG    A+ V
Sbjct: 58  DSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKV 117

Query: 116 FN--------------------------------ISFRDEVSYNILIVGYSQTSDCSESL 143
           F+                                +  +D VS+N +++ ++Q     E+L
Sbjct: 118 FDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEAL 177

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203
             +SE R LG++ +  SF G ++ C  L  +   +++HG  +     +++ +++S+LD Y
Sbjct: 178 RFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAY 237

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
            + G +  A K+FD +  +D  +W T++ GY   G++ +A  LF  M E     +PVS+ 
Sbjct: 238 VKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEK----NPVSWT 293

Query: 264 AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
           A+++  +  G+  K  + F +M    V+P +  ++
Sbjct: 294 ALISGYARNGMGHKALELFTKMMLFHVRPDQFTFS 328



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 110/261 (42%), Gaps = 37/261 (14%)

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH-------- 181
           IV   + +  +E++S    +   G++ D  +    +  CA+  A+++GK +H        
Sbjct: 31  IVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGL 90

Query: 182 ---GVTIRKHL---------------------HTHLFVANSILDFYTRSGRIDLANKIFD 217
              G  +  HL                       +L+  N++L  Y + G I  A K+FD
Sbjct: 91  KRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFD 150

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            +P KD  SWNT+++ +   G  D A+  +   R+ G+  +  S+  +LT C     V  
Sbjct: 151 KMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGL 210

Query: 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
            ++   ++         +  + ++D   + GLM DA KL   +    D   W  ++    
Sbjct: 211 TRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSAR-DVLAWTTMVSGYA 269

Query: 338 IYGNVELGAWAAEHLFMLKPQ 358
            +G+++    +A  LF+  P+
Sbjct: 270 KWGDMK----SANELFVEMPE 286


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 145/437 (33%), Positives = 239/437 (54%), Gaps = 33/437 (7%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A+ +F+ I   N+  +N+ +  F+ ++   K+     +   +   P+++T   ++ AC +
Sbjct: 66  AAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQ 125

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              L  G + H +IIR G + D+++ N+L  MY+  G +  A  VF  IS  D VS+  +
Sbjct: 126 KGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSM 185

Query: 130 IVGYSQTSDCSESLSLFSEM-------------------------------RLLGMKHDV 158
           + GY ++ D + +  LF +M                               +  G+  + 
Sbjct: 186 VAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANE 245

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
              +  I++CA+L A++ G+  H   +R  +  +L +  +++D Y R G ID A  +FD 
Sbjct: 246 TVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQ 305

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           LP +D+ SW TLI G+ M G  + A+  F  M + G+    +++ A+L+ACSHGGLVE+G
Sbjct: 306 LPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERG 365

Query: 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
            + F+ M+ D  ++P   HY CMVDLLGRAG + +A K +  +P++P+A IWGALLGACR
Sbjct: 366 LELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACR 425

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           I+ N E+   A + L  LKP+H GYY+LLSN+YA   KW+    +R++MK R   K PG 
Sbjct: 426 IHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGY 485

Query: 398 SWVQTRDEVQDFVVNDR 414
           +  +   +V  F + D+
Sbjct: 486 TLFEMDGKVHKFTIGDK 502



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 120/233 (51%), Gaps = 3/233 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y KS     A  LF  + EKN+V+W+ M++ +A+N    KA++L   +       N   +
Sbjct: 189 YIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVM 248

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            +V+ +CA    L  G+  H  I+R  +  +L L  AL DMYA+CG ++ A  VF+ +  
Sbjct: 249 VSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPG 308

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD +S+  LI G++      ++L  FS M   G+    ++F   +SAC++   +++G E+
Sbjct: 309 RDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLEL 368

Query: 181 HGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
                R + +   L     ++D   R+G++  A K  + +P+K +A  W  L+
Sbjct: 369 FESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALL 421



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 133/298 (44%), Gaps = 33/298 (11%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQT 136
           K IHA +IR    FD+F  + L  +      L+ A  VF  I   +   YN  I G+S +
Sbjct: 32  KIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGS 91

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
            D  +S   + + +  G+  D +++   + AC    ++  G + HG  IR    + ++V 
Sbjct: 92  KDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQ 151

Query: 197 NSILDFYT-------------------------------RSGRIDLANKIFDCLPVKDSA 225
           NS++  Y+                               +SG +  A K+FD +P K+  
Sbjct: 152 NSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLV 211

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           +W+ +I GY      D AI L+  ++ +GV  +    ++++ +C+H G +E G++  D +
Sbjct: 212 TWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYI 271

Query: 286 QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             + +    +    +VD+  R G ++ A+ +   LP   DA  W  L+    ++G  E
Sbjct: 272 LRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGR-DALSWTTLIAGFAMHGYAE 328



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+     +A ++F  +  ++ +SW  ++A FA +    KAL+    M      P  +T
Sbjct: 289 MYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREIT 348

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
            T VL AC+ G  +  G E+   + R   +   L     + D+  + G L  A+   N
Sbjct: 349 FTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVN 406



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 48/248 (19%), Positives = 109/248 (43%), Gaps = 14/248 (5%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           +R L +K+  +SF+    +C  L+ +K    IH   IR H    +F A+ ++        
Sbjct: 9   LRKLELKNPKLSFL---ESCTTLSHLKI---IHAHLIRAHTIFDVFAASCLISISINKNL 62

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +D A ++F  +   +   +N+ I G+    + D + + +   + +G+  D ++Y  ++ A
Sbjct: 63  LDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKA 122

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           C+  G ++ G +   ++              +V +    G ++ A  + + +    D   
Sbjct: 123 CTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISC-LDVVS 181

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQH--CGYYILLSNMYAEAGKWDEASKVRELM 386
           W +++      G+V     +A  LF   P+     + +++S  YA+   +D+A ++  L+
Sbjct: 182 WTSMVAGYIKSGDVT----SARKLFDKMPEKNLVTWSVMISG-YAKNSFFDKAIELYFLL 236

Query: 387 KSREAKKN 394
           +S     N
Sbjct: 237 QSEGVHAN 244


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 141/413 (34%), Positives = 241/413 (58%), Gaps = 6/413 (1%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           KS        +F  +   ++ SWNA+++ + QN    +A++L R+M    + P+  TL  
Sbjct: 362 KSGDVRTGRQIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAV 421

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L +CA   FL  GKE+HA   + G   D+++ ++L ++Y+KCG + L+++VF+ +   D
Sbjct: 422 ILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELD 481

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            V +N ++ G+S  S   ++LS F +MR LG      SF   +S+CA L+++ QG++ H 
Sbjct: 482 VVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQFHA 541

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             ++      +FV +S+++ Y + G ++ A   FD +P +++ +WN +I GY   G+   
Sbjct: 542 QIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGHN 601

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMV 301
           A+ L+  M   G   D ++Y+A+LTACSH  LV++G + F+ M Q   V P   HY C++
Sbjct: 602 ALCLYNDMISSGEKPDDITYVAVLTACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCII 661

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361
           D L RAG   +   ++  +P + DA +W  +L +CRI+ N+ L   AAE L+ L PQ+  
Sbjct: 662 DCLSRAGRFNEVEVILDAMPCKDDAVVWEVVLSSCRIHANLSLAKRAAEELYRLDPQNSA 721

Query: 362 YYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            Y+LL+NMY+  GKWD+A  VR+LM   + +K+PG S    R++ Q  + N++
Sbjct: 722 SYVLLANMYSSLGKWDDAHVVRDLMSHNQVRKDPGYS----RNDTQIILENEQ 770



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 191/433 (44%), Gaps = 60/433 (13%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE------ 54
           +Y+K    A A ++F NI  KNI SWNA++A + + R    A +L  +MP  N       
Sbjct: 50  LYSKCDHIASACHVFDNIPHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTL 109

Query: 55  -------------------------FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
                                     P+ +T   V  AC        G+  H  +I+ GL
Sbjct: 110 ISTMVRCGYERQALDTYDSVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGL 169

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
             ++++ NAL  MYAKCG    A  VF +I   +EV++  ++ G +QT+   E+  LF  
Sbjct: 170 ESNIYVVNALLCMYAKCGLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRL 229

Query: 149 MRLLGMKHDVVSFMGAISACAN----------LAAIKQGKEIHGVTIRKHLHTHLFVANS 198
           M   G++ D VS    +  CA           ++   QGK++H ++++      L + NS
Sbjct: 230 MLRKGIRVDSVSLSSMLGVCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNS 289

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
           +LD Y + G +D A K+F  L      SWN +I GYG     + A    + M+ DG   D
Sbjct: 290 LLDMYAKIGDMDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPD 349

Query: 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
            V+YI +LTAC   G V  G++ FD M      P+   +  ++    +     +AV+L +
Sbjct: 350 DVTYINMLTACVKSGDVRTGRQIFDCMPC----PSLTSWNAILSGYNQNADHREAVELFR 405

Query: 319 NLPVE---PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY------ILLSNM 369
            +  +   PD      +L +C      ELG   A        Q  G+Y        L N+
Sbjct: 406 KMQFQCQHPDRTTLAVILSSC-----AELGFLEAGKEVHAASQKFGFYDDVYVASSLINV 460

Query: 370 YAEAGKWDEASKV 382
           Y++ GK + +  V
Sbjct: 461 YSKCGKMELSKHV 473



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 131/227 (57%), Gaps = 2/227 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K  +   + ++F  + E ++V WN+M+A F+ N L   AL   ++M     FP+  +
Sbjct: 460 VYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFS 519

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
              V+ +CA+   L  G++ HA+I++ G   D+F+ ++L +MY KCG +N A+  F++  
Sbjct: 520 FATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMP 579

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ V++N +I GY+Q  D   +L L+++M   G K D ++++  ++AC++ A + +G E
Sbjct: 580 GRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITYVAVLTACSHSALVDEGLE 639

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
           I    ++K+ +   +     I+D  +R+GR +    I D +P KD A
Sbjct: 640 IFNAMLQKYGVVPKVAHYTCIIDCLSRAGRFNEVEVILDAMPCKDDA 686



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 147/343 (42%), Gaps = 50/343 (14%)

Query: 54  EFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ 113
           E   S+ L N++  C        GK +HAR+ R  L  D FL+N   ++Y+KC  +  A 
Sbjct: 2   EKSKSLNLANLVQHCITNKAHLSGKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASAC 61

Query: 114 NVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM----------------------- 149
           +VF NI  ++  S+N ++  Y +  +   +  LF +M                       
Sbjct: 62  HVFDNIPHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQ 121

Query: 150 --------RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201
                    L G+    ++F    SAC +L     G+  HGV I+  L ++++V N++L 
Sbjct: 122 ALDTYDSVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLC 181

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y + G    A ++F  +P  +  ++ T++ G     ++  A  LF  M   G+  D VS
Sbjct: 182 MYAKCGLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVS 241

Query: 262 YIAILTACSHG--------GLVEKGKKYFDEMQADSVK---PTEMHYA-CMVDLLGRAGL 309
             ++L  C+ G        G+    +    +M   SVK     ++H    ++D+  + G 
Sbjct: 242 LSSMLGVCAKGERDVGPCHGISTNAQG--KQMHTLSVKLGFERDLHLCNSLLDMYAKIGD 299

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
           M+ A K+  NL      + W  ++     YGN      AAE+L
Sbjct: 300 MDSAEKVFVNLNRHSVVS-WNIMIAG---YGNRCNSEKAAEYL 338


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 151/405 (37%), Positives = 241/405 (59%), Gaps = 4/405 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     EA  +F N+ E+++VSW +M+  +  N     AL L + M I    PNSVT
Sbjct: 266 MYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVT 325

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           +  +L ACA  + L+ G+ +H  ++++ L  ++ +  +L DMYAKC CL L+ +VF  + 
Sbjct: 326 IALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTS 385

Query: 121 RDE-VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           R + V +N L+ G       +E++ LF +M + G++ +  +    + A   LA ++    
Sbjct: 386 RKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQPVNN 445

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNTLILGYGML 237
           I+   +R    +++ VA S++D Y++ G ++ A+KIF+ +PV  +D   W+ +I GYGM 
Sbjct: 446 INSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMH 505

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G  +TA++LF+ M + GV  + V++ ++L +CSH G+V+ G   F  M  D    P + H
Sbjct: 506 GHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYLFKFMLKDHQTIPNDDH 565

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y CMVDLLGRAG M++A  LIK +P  P   +WGALLGAC ++ NVELG  AA  LF L+
Sbjct: 566 YTCMVDLLGRAGRMDEAYDLIKTMPFMPGHAVWGALLGACVMHENVELGEVAARWLFELE 625

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQ 401
           P + G Y+LL+ +YA  G+W++A  VR+ M     +K P  S ++
Sbjct: 626 PGNTGNYVLLAKLYAALGRWEDAENVRQRMDDIGLRKAPAHSLIE 670



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 178/350 (50%), Gaps = 13/350 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY       EA  +F  + EK++VSWN M+  + +N     AL +  +M       +  +
Sbjct: 166 MYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGAS 225

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + +VLPAC     L  G+ +H  +  K L   + ++NAL DMYAKCG ++ A+ VF N+ 
Sbjct: 226 VVSVLPACGYLKELEVGRRVHGLVEEKVLGKKI-VSNALVDMYAKCGSMDEARLVFDNMV 284

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  +I GY    D   +LSLF  M++ G++ + V+    + ACA+L  +K G+ 
Sbjct: 285 ERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRC 344

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  +++ L++ + V  S++D Y +   + L+  +F     K +  WN L+ G      
Sbjct: 345 LHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVHNKL 404

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL-----VEKGKKYFDEMQADSVKPTE 294
              AI LF+ M  +GV  +  +  ++L A  +G L     V     Y   M++  V   +
Sbjct: 405 ATEAIGLFKKMLMEGVEINAATCNSLLPA--YGILADLQPVNNINSYL--MRSGFVSNIQ 460

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVE-PDANIWGALLGACRIYGNVE 343
           +  + ++D+  + G +E A K+   +PV+  D  +W  ++    ++G+ E
Sbjct: 461 VATS-LIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGE 509



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 150/292 (51%), Gaps = 9/292 (3%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P +    ++L        L   K++HA +I  GL   + + + L   YA CG ++ A+ +
Sbjct: 19  PKTTQYQSLLKHYGAAQSLTSTKQLHAHLITSGL-LSIDIRSVLVATYAHCGYVHNARKL 77

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH---DVVSFMGAISACANL 171
           F+ +  R  + YN +I  Y    D  E++ +F EM  LG K    D  ++   I AC+ L
Sbjct: 78  FDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEM--LGSKDCCPDNYTYPFVIKACSEL 135

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
             ++ G+ +HG+T+     +HLFV NS+L  Y   G ++ A K+FD +  K   SWNT+I
Sbjct: 136 LLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMI 195

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
            GY   G  +TA+ +F  M + GV  D  S +++L AC +   +E G++    ++ + V 
Sbjct: 196 NGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVE-EKVL 254

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             ++    +VD+  + G M++A  +  N+ VE D   W +++    + G+ +
Sbjct: 255 GKKIVSNALVDMYAKCGSMDEARLVFDNM-VERDVVSWTSMINGYILNGDAK 305



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 142/271 (52%), Gaps = 3/271 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVT 60
           YA       A  LF  + ++  + +N M+  +       +A+++  EM    +  P++ T
Sbjct: 65  YAHCGYVHNARKLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYT 124

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V+ AC+    +  G+ +H   +       LF+ N+L  MY  CG +  A+ VF+ + 
Sbjct: 125 YPFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMK 184

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+N +I GY +    + +L +F++M   G++ D  S +  + AC  L  ++ G+ 
Sbjct: 185 EKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRR 244

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+   K L   + V+N+++D Y + G +D A  +FD +  +D  SW ++I GY + G+
Sbjct: 245 VHGLVEEKVLGKKI-VSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGD 303

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS 270
             +A++LF+ M+ +G+  + V+   IL AC+
Sbjct: 304 AKSALSLFKIMQIEGLRPNSVTIALILLACA 334


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/419 (35%), Positives = 240/419 (57%), Gaps = 2/419 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F+ + E+++V+W +M+A F QNR    AL L R M       +S  
Sbjct: 389 MYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDV 448

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +T+V+ A      +  G  IH   I++GL  D+F+  +L DMY+K G    A+ VF+ + 
Sbjct: 449 MTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMP 508

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ V++N +I  YS       S++L  ++   G   D VS    + A +++AA+ +GK 
Sbjct: 509 NKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKT 568

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   IR  + + L V N+++D Y + G +  A  IF+ +P ++  +WN++I GYG  G 
Sbjct: 569 LHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGN 628

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A+ LF+ M+      D V+++A++T+CSH G+VE+G   F  M+ +  V+P   HYA
Sbjct: 629 CEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYA 688

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            +VDLLGRAG ++DA   I+ +P++ D ++W  LL ACR + N+ELG   A++L  ++P 
Sbjct: 689 SVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPA 748

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKT 417
               Y+ L N+Y E   WD A+ +R  MK R  KK+PGCSW++ ++ V  F   D   T
Sbjct: 749 RGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKNRVDVFFSGDSSST 807



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 160/327 (48%), Gaps = 10/327 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MY+  SRP EA  LF  +  + NIV+WN M+  F +N +  K+L+L       N    S 
Sbjct: 186 MYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSA 245

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           + T    AC+ G  L  G+++H  +I+     D ++  +L  MYAK G +  A+ VF+  
Sbjct: 246 SFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQV 305

Query: 120 FRDEVSY-NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              EV   N +I  +       ++L L+++M+      D  +    +S C+ + +   G+
Sbjct: 306 LDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGR 365

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H   I++ + +++ + +++L  Y + G  + A+ +F  +  +D  +W ++I G+    
Sbjct: 366 TVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNR 425

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK---PTEM 295
               A++LF AM ++GV  D      ++T+    GL  +  +    +   ++K    +++
Sbjct: 426 RFKDALDLFRAMEKEGVKADS----DVMTSVISAGLGLENVELGHLIHGFAIKRGLESDV 481

Query: 296 HYAC-MVDLLGRAGLMEDAVKLIKNLP 321
             AC +VD+  + G  E A  +  ++P
Sbjct: 482 FVACSLVDMYSKFGFAESAEMVFSSMP 508



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 127/264 (48%), Gaps = 4/264 (1%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDE-VSYNILIVGYS 134
           G++IH  IIR     D +L  AL  MY+ C     A ++F  +  R   V++N++I G+ 
Sbjct: 161 GRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFV 220

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
           +     +SL L+S  +    K    SF GA +AC++   +  G+++H   I+ +     +
Sbjct: 221 ENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPY 280

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           V  S+L  Y +SG ++ A K+FD +  K+    N +I  +   G    A+ L+  M+   
Sbjct: 281 VCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGE 340

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
              D  +  ++L+ CS  G  + G+    E+   S++      + ++ +  + G  EDA 
Sbjct: 341 TPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDAD 400

Query: 315 KLIKNLPVEPDANIWGALL-GACR 337
            +   +  E D   WG+++ G C+
Sbjct: 401 SVFYTMK-ERDVVAWGSMIAGFCQ 423



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 146/340 (42%), Gaps = 38/340 (11%)

Query: 15  FHNIAEKNIV-SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           F+++ +  +  S N+ +    Q     +AL+L  + P         T  ++L  CA    
Sbjct: 11  FYSLRQTEVSPSINSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSN 70

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI------SFRDEVSYN 127
           L  G+ IHA I+  GL  D ++  +L +MY KCG L  A  VF+       S  D   +N
Sbjct: 71  LYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWN 130

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            +I GY +     E L+ F  M+                    L+    G++IHG  IR 
Sbjct: 131 PVIDGYFKYGHFEEGLAQFCRMQ-------------------ELSWYMAGRQIHGYIIRN 171

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS-ASWNTLILGYGMLGEVDTAINL 246
                 ++  +++  Y+   R   A  +F  L  + +  +WN +I G+   G  + ++ L
Sbjct: 172 MFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLEL 231

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT--EMHYAC--MVD 302
           +   + +       S+    TACSHG +++ G+    ++  D +K    +  Y C  ++ 
Sbjct: 232 YSLAKNENCKLVSASFTGAFTACSHGEVLDFGR----QVHCDVIKMNFQDDPYVCTSLLT 287

Query: 303 LLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIY 339
           +  ++G +EDA K+   +    VE    +  A +G  R Y
Sbjct: 288 MYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAY 327


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 145/415 (34%), Positives = 246/415 (59%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A+ +F+ I  +++V+W +M++ F QNR  ++AL+    M ++ E P+S  
Sbjct: 401 MYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDI 460

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + +V+ AC     +  G  IH   I+ GL  D+F+ ++L DMY+K     ++ NVF ++ 
Sbjct: 461 MASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMP 520

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ V++N +I  Y +      S+SLFS+M   G+  D VS    + + +++A +++GK 
Sbjct: 521 LKNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKA 580

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  IR+ + + L + N+++D Y + G +  A  IF  +   +  +WN +I G G  G+
Sbjct: 581 VHGYLIRQRIPSDLQLENALIDMYIKCGFLKYAQHIFQNMLQTNLVTWNIMIAGCGSHGD 640

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++LF+ MR  G+  D +++I++LT+C+H G +E+G K F  M  +  ++P   HY 
Sbjct: 641 WLKAMSLFDEMRSFGIAPDDITFISLLTSCNHCGFIEEGLKLFQLMTVEHGIEPRMEHYV 700

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            +VDLLGRAG ++DA   +KNLP+EPD +IW +LL +CR++ NVELG  AA  L  ++P 
Sbjct: 701 NIVDLLGRAGRLDDAYAFVKNLPIEPDRSIWLSLLCSCRVHHNVELGKLAAHKLLDIEPS 760

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               Y+ L N+Y E    D A+ +R  MK +  KK PGCSW++  + +  F   D
Sbjct: 761 RGSNYVQLLNLYGENELQDRAANLRASMKEKGLKKTPGCSWIEVGNSIDVFFSGD 815



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 142/272 (52%), Gaps = 2/272 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MY    RP +A  LF  + +K N+V+WN M+  F +N L   +L++       N    S 
Sbjct: 198 MYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSA 257

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           + T+ L AC +G F+  G ++H  +++ G   D ++  +L  MY+KC  +  A+NVF+ +
Sbjct: 258 SFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQV 317

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           S +    +N +I  Y       + L ++ +M++L +  D ++    +S+C  + +   G+
Sbjct: 318 SVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGR 377

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH   +++ + +++ + +++L  Y++ G  D AN IF+ +  +D  +W ++I G+    
Sbjct: 378 LIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNR 437

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
           +   A+  + +M   G   D     ++++AC+
Sbjct: 438 KYMEALEFYNSMTVYGEKPDSDIMASVVSACT 469



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 182/422 (43%), Gaps = 58/422 (13%)

Query: 17  NIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRP 76
           N+A  +++  +  +    Q    + ALQ     P++       T  ++L AC     L+ 
Sbjct: 13  NLAHSDLI--DPKIVTLVQQGQYVDALQFYSRNPLN---ATRFTYPSLLKACGFLSNLQY 67

Query: 77  GKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN------ISFRDEVSYNIL 129
           GK IH+ II KG  + D ++T +L + Y KCG    A  VF+      +S +D   +N +
Sbjct: 68  GKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSI 127

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           + GY +     E ++ F  M+L G++ D  S    I   A+   +   K+IHG ++RK  
Sbjct: 128 VNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSL--CILLGASDGHLGYAKQIHGYSVRKVF 185

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGMLGEVDTAINLFE 248
           +   F+ + ++  Y   GR   A ++F  L  K +  +WN +I G+G  G  + ++ ++ 
Sbjct: 186 YGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYL 245

Query: 249 AMREDGVGYDPVSYIAILTACSHG-----------------------------------G 273
             + + V     S+ + L+AC  G                                    
Sbjct: 246 LAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCK 305

Query: 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN---LPVEPDANIWG 330
           LVE  +  FD++   SVK TE+  A +   +G  G   D +K+ K    L + PD+    
Sbjct: 306 LVEDAENVFDQV---SVKKTELWNAMISAYVGN-GRSYDGLKIYKQMKVLQIPPDSLTAT 361

Query: 331 ALLGACRIYGNVELGAWAAEHLFMLKPQ-HCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
            +L +C + G+ + G      L     Q +      L  MY++ G  D+A+ +   +K R
Sbjct: 362 NVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGR 421

Query: 390 EA 391
           + 
Sbjct: 422 DV 423



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 147/324 (45%), Gaps = 8/324 (2%)

Query: 18  IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPG 77
           ++ +++  WN++V  + +   + + +     M +    P++ +L  +L A + GH L   
Sbjct: 116 VSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGA-SDGH-LGYA 173

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDE---VSYNILIVGYS 134
           K+IH   +RK    D FL + L  MY  CG    A  +F     D+   V++N++I G+ 
Sbjct: 174 KQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFK-ELEDKGNVVAWNVMIGGFG 232

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
           +      SL ++   +   +K    SF   +SAC     +  G ++H   ++       +
Sbjct: 233 ENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPY 292

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           V  S+L  Y++   ++ A  +FD + VK +  WN +I  Y   G     + +++ M+   
Sbjct: 293 VCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQ 352

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
           +  D ++   +L++C   G  + G+    E+    ++      + ++ +  + G  +DA 
Sbjct: 353 IPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDAN 412

Query: 315 KLIKNLPVEPDANIWGALL-GACR 337
            +   +    D   WG+++ G C+
Sbjct: 413 SIFNTIKGR-DVVAWGSMISGFCQ 435


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 139/447 (31%), Positives = 243/447 (54%), Gaps = 33/447 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA   R   A  +F  ++++++V+WN M+  + +  L  +A +L  EM   N  P+ + 
Sbjct: 158 MYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMI 217

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---- 116
           L N++ AC R   +R  + I+  +I   +  D  L  AL  MYA  GC+++A   F    
Sbjct: 218 LCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMS 277

Query: 117 ----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                           +D V +  +I  Y+++    E+L +F E
Sbjct: 278 VRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEE 337

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M   G+K DVV+ +  ISAC NL  + + K +H  T    L + L + N++++ Y + G 
Sbjct: 338 MCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGG 397

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +D A  +F+ +P ++  SW+++I  + M GE   +++LF  M+++ V  + V+++ +L  
Sbjct: 398 LDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYG 457

Query: 269 CSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           CSH GLVE+GKK F  M  + ++ P   HY CMVDL GRA L+ +A+++I+++P+ P+  
Sbjct: 458 CSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVV 517

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           IWG+L+ ACR++G +ELG  AA+ +  L+P H G  +L+SN+YA   +WD    +R +M+
Sbjct: 518 IWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIME 577

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVNDR 414
            ++  K  G S +    +  +F++ D+
Sbjct: 578 KKKVFKEKGLSRIDLNGKSHEFLIGDK 604



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 149/319 (46%), Gaps = 39/319 (12%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           + ++   +L A ++   L  G E+H    +     D F+   L DMYA CG +N A+NVF
Sbjct: 113 DRISFPPILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVF 172

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           + +S RD V++N +I  Y +     E+  LF EM+   +  D +     +SAC     ++
Sbjct: 173 DEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMR 232

Query: 176 QGKEIH------GVTIRKHLHT-------------------------HLFVANSILDFYT 204
             + I+       V +  HL T                         +LFV+ +++  Y+
Sbjct: 233 YNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYS 292

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           ++GR+D A  IFD   +KD   W T+I  Y        A+ +FE M   G+  D V+ ++
Sbjct: 293 KAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLS 352

Query: 265 ILTACSHGGLVEKGK---KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
           +++AC + G ++K K   +Y      +SV P +     ++++  + G ++ A  + + +P
Sbjct: 353 VISACVNLGTLDKAKWVHRYTHLNGLESVLPID---NALINMYAKCGGLDAARDVFEKMP 409

Query: 322 VEPDANIWGALLGACRIYG 340
              +   W +++ A  ++G
Sbjct: 410 TR-NVVSWSSMINAFAMHG 427



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 122/247 (49%), Gaps = 2/247 (0%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS-FRDEVSYNILIVGYSQ 135
           K++HA I+R  +N  L          +    L+ A N+F+ IS   + + +N L+   S+
Sbjct: 32  KQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYALNLFSSISPLPESIVFNSLLRDLSR 91

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
           + +   ++  +  +R +G + D +SF   + A + ++A+ +G E+HG   +    +  FV
Sbjct: 92  SGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHGFAFKIATLSDPFV 151

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
              ++D Y   GRI+ A  +FD +  +D  +WNT+I  Y   G +D A  LFE M++  V
Sbjct: 152 ETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNV 211

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
             D +    I++AC   G +   +  +D +  + V+        +V +   AG M+ A++
Sbjct: 212 MPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAME 271

Query: 316 LIKNLPV 322
             + + V
Sbjct: 272 FFRKMSV 278


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 157/447 (35%), Positives = 249/447 (55%), Gaps = 34/447 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK     EA  +F+++ ++N VSW  ++    Q     K+++L  +M       +   
Sbjct: 304 LYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFA 363

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  ++  C     L  G+++H+  ++ G N  + ++N+L  +YAKCG L  A+ VF+ +S
Sbjct: 364 LATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS 423

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMR---------LLG--MKH------------ 156
            RD VS+  +I  YSQ  +  ++   F  M          +LG  ++H            
Sbjct: 424 ERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSA 483

Query: 157 ---------DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
                    D V+++     CA++ A K G +I G T++  L  ++ VAN+ +  Y++ G
Sbjct: 484 MLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCG 543

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
           RI  A K+FD L  KD  SWN +I GY   G    A   F+ M   G   D +SY+A+L+
Sbjct: 544 RISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLS 603

Query: 268 ACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
            CSH GLV++GK YFD M +   + P   H++CMVDLLGRAG + +A  LI  +P++P A
Sbjct: 604 GCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTA 663

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
            +WGALL AC+I+GN EL   AA+H+F L     G Y+LL+ +Y++AGK D++++VR+LM
Sbjct: 664 EVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLM 723

Query: 387 KSREAKKNPGCSWVQTRDEVQDFVVND 413
           + +  KKNPG SW++  ++V  F  +D
Sbjct: 724 RDKGIKKNPGYSWMEVENKVHVFKADD 750



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 156/301 (51%), Gaps = 6/301 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A   F ++AE+++VSWN M+A  +Q+    +AL LV EM       +S T 
Sbjct: 204 YAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTY 263

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T+ L ACAR   L  GK++HA++IR     D ++ +AL ++YAKCG    A+ VFN +  
Sbjct: 264 TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQD 323

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+ +LI G  Q    S+S+ LF++MR   M  D  +    IS C N   +  G+++
Sbjct: 324 RNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQL 383

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H + ++   +  + V+NS++  Y + G +  A  +F  +  +D  SW ++I  Y  +G +
Sbjct: 384 HSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNI 443

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
             A   F+ M       + +++ A+L A    G  E G K +  M +   V P  + Y  
Sbjct: 444 IKAREFFDGM----ATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVT 499

Query: 300 M 300
           +
Sbjct: 500 L 500



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 161/369 (43%), Gaps = 50/369 (13%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQ-------------NRLELKALQLVRE 48
           YAK    ++A  LF  +  +++ SWN ++++ ++               L  + L L  +
Sbjct: 97  YAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLGLFWK 156

Query: 49  MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
                +      L ++   C    F      + ++I R      +F  N++   YAK   
Sbjct: 157 FDFWGDPDVETALVDMFVRCGYVDF---ASRLFSQIERP----TIFCRNSMLAGYAKLYG 209

Query: 109 LNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
           ++ A   F +++ RD VS+N++I   SQ+    E+L L  EM   G++ D  ++  +++A
Sbjct: 210 IDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTA 269

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           CA L ++  GK++H   IR       +VA+++++ Y + G    A ++F+ L  ++S SW
Sbjct: 270 CARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSW 329

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
             LI G         ++ LF  MR + +  D  +   +++ C            F+ M  
Sbjct: 330 TVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC------------FNRM-- 375

Query: 288 DSVKPTEMHYAC--------------MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           D     ++H  C              ++ L  + G +++A  +  ++  E D   W +++
Sbjct: 376 DLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS-ERDIVSWTSMI 434

Query: 334 GACRIYGNV 342
            A    GN+
Sbjct: 435 TAYSQIGNI 443



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 27/289 (9%)

Query: 55  FPNSVT--LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
            P++VT  L + L +C     L   + +H R++  GL   +FL N L   Y  CG L+ A
Sbjct: 15  LPHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDA 74

Query: 113 QNVFNISFRDE--VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF--------- 161
           + +     ++   +++NI++ GY++    S++  LF  M     + DV S+         
Sbjct: 75  RRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMP----RRDVASWNTLMSDTSR 130

Query: 162 -MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
             G+  +C  L   +   ++ G+  +        V  +++D + R G +D A+++F  + 
Sbjct: 131 PAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIE 190

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
                  N+++ GY  L  +D AI  FE M E     D VS+  ++ A S  G V +   
Sbjct: 191 RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAE----RDVVSWNMMIAALSQSGRVREALG 246

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLM----EDAVKLIKNLP-VEP 324
              EM    V+     Y   +    R   +    +   K+I++LP ++P
Sbjct: 247 LVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDP 295


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 146/415 (35%), Positives = 236/415 (56%), Gaps = 5/415 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVS---WNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           +++   R  EA  +F +  E   +    W AM   +++N    +AL L  EM        
Sbjct: 118 LFSVCRRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLLYYEMVCQFGQLG 177

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           +   +  L AC+    L+ G+ +HA++++   + D  + NAL  +Y++ GC + A  VF+
Sbjct: 178 NFAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDEALRVFD 237

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  R+ VS+N LI G  +     E++  F  M+  GM    V+    +  CA + A+  
Sbjct: 238 GMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGS 297

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GKEIH V ++        V NS++D Y + G +D   ++F+ +  KD  SWNTLI GY +
Sbjct: 298 GKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAI 357

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G +  A+  F+ M   G   D +++IA+L+ CSH GL + G + F+ M+ D  + PT  
Sbjct: 358 NGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDYGISPTVE 417

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYAC+VD+LGRAG +++A++++KN+P +P  +IWG+LL +CR++GNV L    A+ LF L
Sbjct: 418 HYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFEL 477

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
           +P + G Y++LSN+YA AG W+    VRE M+ R   K  GCSW+Q + ++  FV
Sbjct: 478 EPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFV 532


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 144/421 (34%), Positives = 239/421 (56%), Gaps = 8/421 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A   F  +  +++V WNAMV  +AQ       L+  R M   +  P+  T+
Sbjct: 101 YLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTV 160

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
           T +L   A    L  G+ IH   ++ G +  + ++N+L DMY KC C+  A  +F +   
Sbjct: 161 TGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMRE 220

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D  S+N +   + Q  D   +L L   M   G++ D+V+    + AC++LAA+  G+EI
Sbjct: 221 KDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREI 280

Query: 181 HGVTIRKHLHTH------LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           HG  I   L         + + N+++D Y + G +  A+ +F+ +  KD ASWN +I+GY
Sbjct: 281 HGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGY 340

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
           GM G  + A+ +F  M E  +  D V+++ +L+ACSH G V +G+ +  +M++   V PT
Sbjct: 341 GMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPT 400

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY C++D+LGRAG +++A +L   +P+E +  +W ALL ACR++ +  L   AA+ +F
Sbjct: 401 IEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVF 460

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            L+P+HCG Y+L+SN+Y   G+++E  +VR  M+ +  +K PGCSW++ ++ V  FV  D
Sbjct: 461 ELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSAD 520

Query: 414 R 414
           R
Sbjct: 521 R 521



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 178/409 (43%), Gaps = 35/409 (8%)

Query: 1   MYAKSSRPAEASYLFHN-IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MY+K ++   A  +F +   E N+ ++NA+++ F  N    +  +  ++M      P+  
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T    + AC     +   K+IH  + + GL  D+F+ +AL + Y K G +  AQ  F  +
Sbjct: 61  TFPCAIKACLD---VLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEEL 117

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD V +N ++ GY+Q       L  F  M    +     +  G +S  A +  +  G+
Sbjct: 118 PIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGR 177

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IHG  ++    + + V+NS++D Y +   I+ A +IF+ +  KD  SWN++   +   G
Sbjct: 178 IIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCG 237

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSH----------------GGLVEKGKKYF 282
           + D  + L + M   G+  D V+   +L ACSH                 GL + GK   
Sbjct: 238 DHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDID 297

Query: 283 DEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI--YG 340
           D +  ++V          +D+  + G M DA  L+       D   W  ++    +  YG
Sbjct: 298 DVLLKNAV----------IDMYAKCGSMRDA-HLVFERMXNKDVASWNIMIMGYGMHGYG 346

Query: 341 NVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
           N  L  ++      LKP    +  +LS   + AG   +       MKS+
Sbjct: 347 NEALEMFSRMCEVQLKPDEVTFVGVLSAC-SHAGFVSQGRNFLAQMKSK 394



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 7/116 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  +  K++ SWN M+  +  +    +AL++   M      P+ VT
Sbjct: 308 MYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVT 367

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLT----NALTDMYAKCGCLNLA 112
              VL AC+   F+  G+   A++  K   +D+  T      + DM  + G L+ A
Sbjct: 368 FVGVLSACSHAGFVSQGRNFLAQMKSK---YDVAPTIEHYTCVIDMLGRAGQLDEA 420


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 149/417 (35%), Positives = 238/417 (57%), Gaps = 8/417 (1%)

Query: 2   YAKSSRPAEASYLFH-NIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y+K    A+A  +F      +N+VSW A+++   QN     A+ L   M      PN  T
Sbjct: 347 YSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFT 406

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            + +L A      L P  +IHA++I+        +  AL   Y+K G    A ++F  I 
Sbjct: 407 YSAMLKASLS--ILPP--QIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIE 462

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA-IKQGK 178
            +D V+++ ++  ++Q  DC  +  LF++M + G+K +  +    I ACA  +A + QG+
Sbjct: 463 QKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGR 522

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           + H ++I+   H  + V+++++  Y+R G ID A  +F+    +D  SWN++I GY   G
Sbjct: 523 QFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHG 582

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               AI  F  M   G+  D V+++A++  C+H GLV +G++YFD M  D  + PT  HY
Sbjct: 583 YSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHY 642

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACMVDL  RAG +++ + LI+++P    A +W  LLGACR++ NVELG ++A+ L  L+P
Sbjct: 643 ACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEP 702

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
                Y+LLSN+YA AGKW E  +VR+LM  R+ KK  GCSW+Q +++V  F+  D+
Sbjct: 703 HDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDK 759



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 168/360 (46%), Gaps = 21/360 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     E   +F  + +KN+V+W +++   A  ++  + + L   M     +PN  T
Sbjct: 144 MYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFT 203

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL A A    L  G+ +HA+ ++ G    +F+ N+L +MYAKCG +  A++VFN + 
Sbjct: 204 FASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWME 263

Query: 120 FRDEVSYNILIVGYSQTSDCS-ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            RD VS+N L+ G  Q ++C  E+L LF E R    K    ++   I  CANL  +   +
Sbjct: 264 TRDMVSWNTLMAGL-QLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALAR 322

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLILGYGML 237
           ++H   ++   H    V  ++ D Y++ G +  A  IF      ++  SW  +I G    
Sbjct: 323 QLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQN 382

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G++  A+ LF  MRED V  +  +Y A+L A               ++ A  +K    H 
Sbjct: 383 GDIPLAVVLFSRMREDRVMPNEFTYSAMLKA--------SLSILPPQIHAQVIKTNYQHI 434

Query: 298 ACMVDLL----GRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             +   L     + G  EDA+ + K +  + D   W A+L      G+ E     A +LF
Sbjct: 435 PSVGTALLASYSKFGSTEDALSIFKMIE-QKDVVAWSAMLSCHAQAGDCE----GATYLF 489



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 152/342 (44%), Gaps = 5/342 (1%)

Query: 8   PAEASYLFHNIAEKNI-VSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLP 66
           P  A Y    I  ++  V  N ++ ++A+  +  + L             +S TL+ VL 
Sbjct: 48  PPGARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLK 107

Query: 67  ACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEV 124
           AC        G+++H   ++ G +  ++    +L DMY KCG +     VF  +  ++ V
Sbjct: 108 ACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVV 167

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           ++  L+ G +     SE ++LF  MR  G+  +  +F   +SA A+  A+  G+ +H  +
Sbjct: 168 TWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQS 227

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD-TA 243
           ++    + +FV NS+++ Y + G ++ A  +F+ +  +D  SWNTL+ G   L E +  A
Sbjct: 228 VKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGL-QLNECELEA 286

Query: 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303
           + LF   R         +Y  ++  C++   +   ++    +       T      + D 
Sbjct: 287 LQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADA 346

Query: 304 LGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
             + G + DA+ +        +   W A++  C   G++ L 
Sbjct: 347 YSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 1/111 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++      A  +F    ++++VSWN+M++ +AQ+   +KA++  R+M       + VT
Sbjct: 546 MYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVT 605

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLN 110
              V+  C     +  G++    ++R   +N  +     + D+Y++ G L+
Sbjct: 606 FLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLD 656


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 149/446 (33%), Positives = 234/446 (52%), Gaps = 34/446 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +   P +A  +F++I   +IVSW  +++ +       KA  +   +      P+S  +
Sbjct: 47  YTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCV 106

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---- 117
              + AC     L  G+ +H  + R  L  D  + NAL DMY++ G + +A +VF     
Sbjct: 107 VGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEI 166

Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                       +  R+ VS+  +I GY Q       L LF EM
Sbjct: 167 KDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEM 226

Query: 150 RLLGMK-HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           R  G     V++ +  +S CA++ A   G  +HG   + +L   + V N+++D Y +SG 
Sbjct: 227 RAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGA 286

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           + LA KIF  +P +D  SW T+I G  + G+   A+  F  M + GV  + V+ +++L+A
Sbjct: 287 LVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSA 346

Query: 269 CSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           CSH GLV +G+  F +M Q   +KP   HY CMVDLLGRAGL+ +A +LI+++P++PD+ 
Sbjct: 347 CSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSV 406

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           IW +LL AC ++GN+ L   A + +  L+P   G YILL N+Y  A +W++A K R+ M+
Sbjct: 407 IWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMR 466

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVND 413
            R  KK PGCSWV+    V +F+  D
Sbjct: 467 DRRVKKKPGCSWVEVNGVVHEFLAED 492



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 121/235 (51%), Gaps = 10/235 (4%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQN 114
           N+ T   +L  C     L   K+IH + +  GL  +    L   L + Y + G    AQ 
Sbjct: 2   NTQTFYFLLQKCGS---LEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQK 58

Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           VFN I   D VS+  LI  Y  TS   ++ S+FS +   G++ D    +GA+SAC +   
Sbjct: 59  VFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKD 118

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           +  G+ +HG+  R  L +   V N+++D Y+RSG I++A  +F  + +KD +SW +L+ G
Sbjct: 119 LSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNG 178

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           +    +++ A  +F+ M       + VS+ A++T    G +   G + F EM+A+
Sbjct: 179 FIKCNDIEAARRIFDEMPM----RNSVSWTAMITGYVQGEVPIPGLELFQEMRAE 229


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 153/417 (36%), Positives = 241/417 (57%), Gaps = 9/417 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN-RLELKALQLVR-EMPIHNEFPNSV 59
           Y K     +A  LF ++  K++VSWN++++ F++   + L A   ++ EM +    PN V
Sbjct: 84  YNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHMSLTAFYTMKFEMSVK---PNEV 140

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T+ +++ AC     L  GK IH   I+ G   ++ + N+L +MY K G L  A  +F  I
Sbjct: 141 TILSMISACNGA--LDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAI 198

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
              + VS+N +I          E +  F++MR LG++ D  + +  + AC +L   K  +
Sbjct: 199 PDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAE 258

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IHG+         + +A ++LD Y + GR+  +  +F  +   D  +W  ++ GY   G
Sbjct: 259 SIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHG 318

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
               AI LFE+M   G+  D V++  +L+ACSH GLV +GK YF+ M +   ++P   HY
Sbjct: 319 LGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHY 378

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +CMVDLLGR GL+ DA ++I+N+P+EP+A +WGALLGACR++GN+ELG   AEHL  ++P
Sbjct: 379 SCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEP 438

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
                YI+LSNMY+ +  W +A+KVR L+K R  K+ PG S ++  ++   F V DR
Sbjct: 439 LDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDR 495



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 168/365 (46%), Gaps = 52/365 (14%)

Query: 24  VSWNAMVAN--FAQNRLEL-----KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRP 76
           + WN+ +    F Q+R +      ++  LVR+       P ++ ++ +L A      +  
Sbjct: 3   LRWNSSILYNFFIQSRTQYPLLLHRSFHLVRQCAT----PEAI-VSALLIAVNSCPSISN 57

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQ 135
            +EIHAR+ +  L  D F+ + L   Y K G    A  +F ++  +D VS+N LI G+S+
Sbjct: 58  CREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSR 117

Query: 136 TSDCSESLSLFSEMRL-LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
                 SL+ F  M+  + +K + V+ +  ISAC    A+  GK IHG  I+      + 
Sbjct: 118 C--LHMSLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGKYIHGFGIKVGGTLEVK 173

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           VANS+++ Y +SG +  A ++F+ +P  ++ SWN++I      G     I+ F  MR  G
Sbjct: 174 VANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLG 233

Query: 255 VGYDPVSYIAILTACSH---GGLVEK----------GKKY------------FDEMQADS 289
           +  D  + +A+L AC H   G L E           G K                + A  
Sbjct: 234 IEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASY 293

Query: 290 VKPTEMHYACMVD----LLGRA--GLMEDAVKLIKNLP---VEPDANIWGALLGACRIYG 340
              TE+ +A  V     L G A  GL  +A+KL +++    +EPD   +  LL AC   G
Sbjct: 294 GVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSG 353

Query: 341 NVELG 345
            V  G
Sbjct: 354 LVNEG 358



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 125/274 (45%), Gaps = 16/274 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY KS     A  LF  I + N VSWN+++A    N    + +    +M       +  T
Sbjct: 181 MYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGT 240

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  +L AC      +  + IH  +   G    + +  AL D YAK G L+ +  VF  + 
Sbjct: 241 ILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVG 300

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK- 178
           F D V++  ++ GY+      E++ LF  M   G++ D V+F   +SAC++   + +GK 
Sbjct: 301 FADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKS 360

Query: 179 ------EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
                 E++G+  R   ++       ++D   R G ++ A ++   +P++ +A  W  L+
Sbjct: 361 YFNVMSEVYGIEPRVDHYS------CMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALL 414

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
               + G ++    + E +  +    DP +YI +
Sbjct: 415 GACRVHGNIELGKEVAEHLI-NMEPLDPRNYIML 447


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 144/421 (34%), Positives = 239/421 (56%), Gaps = 8/421 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A   F  +  +++V WNAMV  +AQ       L+  R M   +  P+  T+
Sbjct: 181 YLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTV 240

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
           T  L   A    L  G+ IH   ++ G +  + ++N+L DMY KC C+  A  +F +   
Sbjct: 241 TGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMRE 300

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D  S+N ++  + Q  D   +L L   M   G++ D+V+    + AC++LAA+  G+EI
Sbjct: 301 KDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREI 360

Query: 181 HGVTIRKHLHTH------LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           HG  I   L         + + N+++D Y + G +  A+ +F+ +  KD ASWN +I+GY
Sbjct: 361 HGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGY 420

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
           GM G  + A+ +F  M E  +  D V+++ +L+ACSH G V +G+ +  +M++   V PT
Sbjct: 421 GMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPT 480

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HY C++D+LGRAG +++A +L   +P+E +  +W ALL ACR++ +  L   AA+ +F
Sbjct: 481 IEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVF 540

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            L+P+HCG Y+L+SN+Y   G+++E  +VR  M+ +  +K PGCSW++ ++ V  FV  D
Sbjct: 541 ELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSAD 600

Query: 414 R 414
           R
Sbjct: 601 R 601



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 129/241 (53%), Gaps = 11/241 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  + EK+I SWN++V+   Q       L+L+  M      P+ VT
Sbjct: 281 MYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVT 340

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF------DLFLTNALTDMYAKCGCLNLAQN 114
           +T VLPAC+    L  G+EIH  +I  GL        D+ L NA+ DMYAKCG +  A  
Sbjct: 341 VTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHL 400

Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           VF  +S +D  S+NI+I+GY      +E+L +FS M  + +K D V+F+G +SAC++   
Sbjct: 401 VFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGF 460

Query: 174 IKQGKEIHGVTIRKHLHTHLFVAN--SILDFYTRSGRIDLANKIFDCLPVK-DSASWNTL 230
           + QG+    V ++        + +   ++D   R+G++D A ++   +P++ +   W  L
Sbjct: 461 VSQGRNFL-VQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRAL 519

Query: 231 I 231
           +
Sbjct: 520 L 520



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 162/367 (44%), Gaps = 33/367 (8%)

Query: 20  EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79
           E N+ ++NA+++ F  N    +  +  ++M      P+  T    + AC     +   K+
Sbjct: 101 EINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLD---VLEIKK 157

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSD 138
           IH  + + GL  D+F+ +AL + Y K G +  AQ  F  +  RD V +N ++ GY+Q   
Sbjct: 158 IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQ 217

Query: 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
               L  F  M    +     +  G +S  A +  +  G+ IHG  ++    + + V+NS
Sbjct: 218 FEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNS 277

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
           ++D Y +   I+ A +IF+ +  KD  SWN+++  +   G+ D  + L + M   G+  D
Sbjct: 278 LIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPD 337

Query: 259 PVSYIAILTACSH----------------GGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
            V+   +L ACSH                 GL + GK   D +  ++V          +D
Sbjct: 338 LVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAV----------ID 387

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI--YGNVELGAWAAEHLFMLKPQHC 360
           +  + G M DA  + + +    D   W  ++    +  YGN  L  ++      LKP   
Sbjct: 388 MYAKCGSMRDAHLVFERMS-NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEV 446

Query: 361 GYYILLS 367
            +  +LS
Sbjct: 447 TFVGVLS 453


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 145/415 (34%), Positives = 239/415 (57%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K+    +A  +F  I EKN+VSW A++  + ++    +AL L R +      P+S T
Sbjct: 146 LYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFT 205

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  +L AC+R   L  G+ I   +   G   ++F+  +L DMYAKCG +  A+ VF+ + 
Sbjct: 206 LVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMV 265

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V ++ LI GY+      E+L +F EM+   ++ D  + +G  SAC+ L A++ G  
Sbjct: 266 EKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNW 325

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
             G+       ++  +  +++DFY + G +  A ++F  +  KD   +N +I G  M G 
Sbjct: 326 ARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGH 385

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
           V  A  +F  M + G+  D  +++ +L  C+H GLV+ G +YF  M +  SV PT  HY 
Sbjct: 386 VGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYG 445

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDL  RAGL+ +A  LI+++P+E ++ +WGALLG CR++ + +L     + L  L+P 
Sbjct: 446 CMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPW 505

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + G+Y+LLSN+Y+ + +WDEA K+R  +  +  +K PGCSWV+    V +F+V D
Sbjct: 506 NSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGD 560



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 162/334 (48%), Gaps = 3/334 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A+ +F      NI  +N ++     N     A+ +   M  H   P++ T   VL AC R
Sbjct: 54  ATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTR 113

Query: 71  -GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
             H+   G  +H+ +I+ G ++D+F+   L  +Y+K G L  A+ VF+ I  ++ VS+  
Sbjct: 114 LPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTA 173

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +I GY ++    E+L LF  +  +G++ D  + +  + AC+ +  +  G+ I G      
Sbjct: 174 IICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESG 233

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
              ++FVA S++D Y + G ++ A ++FD +  KD   W+ LI GY   G    A+++F 
Sbjct: 234 SVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFF 293

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            M+ + V  D  + + + +ACS  G +E G      M  D      +    ++D   + G
Sbjct: 294 EMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCG 353

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
            +  A ++ K +    D  ++ A++    + G+V
Sbjct: 354 SVAQAKEVFKGMR-RKDCVVFNAVISGLAMCGHV 386



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 117/262 (44%), Gaps = 3/262 (1%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILIVG 132
           L   K+ H  ++R GL+ D +L N L            A  VF  +    +  YN LI G
Sbjct: 16  LHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRG 75

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA-IKQGKEIHGVTIRKHLHT 191
                   +++S+++ MR  G   D  +F   + AC  L      G  +H + I+     
Sbjct: 76  MVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDW 135

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            +FV   ++  Y+++G +  A K+FD +P K+  SW  +I GY   G    A+ LF  + 
Sbjct: 136 DVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLL 195

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311
           E G+  D  + + IL ACS  G +  G+     M+             +VD+  + G ME
Sbjct: 196 EMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSME 255

Query: 312 DAVKLIKNLPVEPDANIWGALL 333
           +A ++   + VE D   W AL+
Sbjct: 256 EARRVFDGM-VEKDVVCWSALI 276



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 102/263 (38%), Gaps = 48/263 (18%)

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
            L ++ Q K+ H + +R  LH   ++ N +L           A  +F   P  +   +NT
Sbjct: 12  GLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNT 71

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC-------------------- 269
           LI G         A++++ +MR+ G   D  ++  +L AC                    
Sbjct: 72  LIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKT 131

Query: 270 ----------------SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
                           S  G +   +K FDE+   +V    + +  ++     +G   +A
Sbjct: 132 GFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNV----VSWTAIICGYIESGCFGEA 187

Query: 314 VKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LS 367
           + L + L    + PD+     +L AC   G++  G W     +M +    G   +   L 
Sbjct: 188 LGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDG--YMRESGSVGNVFVATSLV 245

Query: 368 NMYAEAGKWDEASKVRELMKSRE 390
           +MYA+ G  +EA +V + M  ++
Sbjct: 246 DMYAKCGSMEEARRVFDGMVEKD 268


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 156/429 (36%), Positives = 252/429 (58%), Gaps = 21/429 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE------ 54
           MY+   +  +A  +F  I ++NIVSW +M+  +  N   L A+ L +++ +         
Sbjct: 120 MYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAM 179

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG--CLNLA 112
           F +S+ L +V+ AC+R       + IH+ +I++G +  + + N L D YAK G   + +A
Sbjct: 180 FLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVA 239

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS----- 166
           + +F+ I  +D VSYN ++  Y+Q+   +E+  +F  +    +K+ VV+F  AI+     
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL----VKNKVVTF-NAITLSTVL 294

Query: 167 -ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
            A ++  A++ GK IH   IR  L   + V  SI+D Y + GR++ A K FD +  K+  
Sbjct: 295 LAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVR 354

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           SW  +I GYGM G    A+ LF AM + GV  + ++++++L ACSH GL  +G ++F+ M
Sbjct: 355 SWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAM 414

Query: 286 QAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344
           +    V+P   HY CMVDLLGRAG ++ A  LI+ + ++PD+ IW +LL ACRI+ NVEL
Sbjct: 415 KGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVEL 474

Query: 345 GAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRD 404
              +   LF L   +CGYY+LLS++YA+AG+W +  +VR +MK+R   K PG S ++   
Sbjct: 475 AEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNG 534

Query: 405 EVQDFVVND 413
           EV  F++ D
Sbjct: 535 EVHVFLIGD 543



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 187/392 (47%), Gaps = 27/392 (6%)

Query: 14  LFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGH 72
           LF+   +K ++ SWN+++A+ A++    +AL     M   + +P   +    + AC+   
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
            +  GK+ H +    G   D+F+++AL  MY+ CG L  A+ VF+ I  R+ VS+  +I 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150

Query: 132 GYSQTSDCSESLSLFSEMRL------LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           GY    +  +++SLF ++ +        M  D +  +  ISAC+ + A    + IH   I
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVI 210

Query: 186 RKHLHTHLFVANSILDFYTRSGR--IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
           ++     + V N++LD Y + G   + +A KIFD +  KD  S+N+++  Y   G  + A
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270

Query: 244 INLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
             +F  + +   V ++ ++   +L A SH G +  GK   D++    ++   +    ++D
Sbjct: 271 FEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIID 330

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF------MLK 356
           +  + G +E A K    +    +   W A++    ++G+    A  A  LF       ++
Sbjct: 331 MYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMHGH----AAKALELFPAMIDSGVR 385

Query: 357 PQHCGYYILL-----SNMYAEAGKWDEASKVR 383
           P +  +  +L     + ++ E  +W  A K R
Sbjct: 386 PNYITFVSVLAACSHAGLHVEGWRWFNAMKGR 417


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 236/434 (54%), Gaps = 33/434 (7%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  I   +   +N +   + + +L    + +   M   +  PN  T   ++ AC   + 
Sbjct: 76  VFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYA 135

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVG 132
           +  GK+IHA +++ G   D F  N L  MY     L  A+ VF N+  RD VS+  LI G
Sbjct: 136 IEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITG 195

Query: 133 YSQ-------------------------------TSDCSESLSLFSEMRLLGMKHDVVSF 161
           YSQ                               ++   E+ +LF  MRL  +  D    
Sbjct: 196 YSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVA 255

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
              +SAC  L A++QGK IHG   +  +     +A +++D Y + G ++ A+++F+ LP 
Sbjct: 256 ASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQ 315

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
           K  +SWN +I G  M G+ + AI LF+ M  + V  D ++++ +L+AC+H GLVE+GK Y
Sbjct: 316 KGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHY 375

Query: 282 FDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           F  M +   +KP   H+ CMVDLLGRAGL+E+A KLI  +PV PDA + GAL+GACRI+G
Sbjct: 376 FQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHG 435

Query: 341 NVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
           N ELG    + +  L+P + G Y+LL+N+YA AG+W++ +KVR+LM  R  KK PG S +
Sbjct: 436 NTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMI 495

Query: 401 QTRDEVQDFVVNDR 414
           ++   V +F+   R
Sbjct: 496 ESESGVDEFIAGGR 509



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 129/300 (43%), Gaps = 35/300 (11%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYA--KCGCLNLAQNVFN-ISFRDEVSYNILIVGYS 134
           K+ H++IIR GL+ D      +    A  K G LN A  VF+ I   D   YN +  GY 
Sbjct: 37  KQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYL 96

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
           +       + ++S M    +  +  ++   I AC    AI++GK+IH   ++       F
Sbjct: 97  RWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGF 156

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT------------ 242
             N+++  Y     ++ A ++FD +P +D  SW +LI GY   G VD             
Sbjct: 157 SLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERN 216

Query: 243 -------------------AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283
                              A  LF+ MR + V  D     ++L+AC+  G +E+GK    
Sbjct: 217 SVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHG 276

Query: 284 EMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            ++   ++        ++D+  + G +E A ++   LP +   + W  ++G   ++G  E
Sbjct: 277 YIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELP-QKGISSWNCMIGGLAMHGKGE 335



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +AS +F+ + +K I SWN M+   A +     A++L +EM      P+ +T
Sbjct: 296 MYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGIT 355

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             NVL ACA    +  GK     +    GL   +     + D+  + G L  A+ + N
Sbjct: 356 FVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLIN 413


>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 722

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 146/418 (34%), Positives = 252/418 (60%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K     +A  LF  + EK+ V WN M+A +A+     + L+L + M       +  T
Sbjct: 270 LYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFT 329

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V+ + A+   +  GK+ HA I+R G +  + + N+L DMY +C  L+ A  +FN ++
Sbjct: 330 ALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMT 389

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  +S++ +I GY +      +LSLFS+M+  G++ D V  +  + A  ++ A++  K 
Sbjct: 390 DKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKY 449

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNTLILGYGML 237
           +HG +++  L +   +  ++L  Y + G I++A ++F+   +  KD   WN++I  +   
Sbjct: 450 LHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANH 509

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMH 296
           G+      L+  M+      D V+++ +LTAC + GLVEKGK++F EM ++   +P++ H
Sbjct: 510 GDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEH 569

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YACMV+LLGRAGL+ +A +L+KN+P++PDA +WG LL AC+++   +L  +AAE L  ++
Sbjct: 570 YACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLINME 629

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P++ G YILLSN+YA AGKWD  +K+R  ++++  KK PGCSW++    V +F V D+
Sbjct: 630 PRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLEINGHVTEFRVADQ 687



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 146/323 (45%), Gaps = 6/323 (1%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F ++ + N+  +NA++ N  +     + L + ++M   +  P+  T   VL +C+    
Sbjct: 81  VFCSVIDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSN 140

Query: 74  LRPGKEIHARIIRKGLNFDLF--LTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIV 131
           +  G+ IH  +++ G  FDLF  +  AL +MY +C     A  +F+     ++ +   + 
Sbjct: 141 VGFGRTIHGYLVKLG--FDLFDVVATALAEMYEECIEFENAHQLFDKRSVKDLGWPSSLT 198

Query: 132 GYSQTSDCSESL-SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH 190
                +D  E +  +F  M    +  D  +F   +   A L +I+  K +H + I   L 
Sbjct: 199 TEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLS 258

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
             L V  ++L  Y++   +  A K+FD +P KD   WN +I  Y   G+    + LF++M
Sbjct: 259 GDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSM 318

Query: 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
              G+  D  + + ++++ +    V+ GK+    +  +        +  ++D+     ++
Sbjct: 319 ARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKIL 378

Query: 311 EDAVKLIKNLPVEPDANIWGALL 333
           + A K+  N   +     W A++
Sbjct: 379 DSACKIF-NWMTDKSVISWSAMI 400



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 126/290 (43%), Gaps = 6/290 (2%)

Query: 50  PIHNEFPNSVT-LTNVLPAC-ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG 107
           PI   FP + + L N L    +R + ++  ++IHAR I  G + +  L++ L D YA  G
Sbjct: 14  PIFLNFPATQSRLLNTLSLLFSRCNSIQHLQQIHARFILHGFHQNPTLSSKLIDCYANLG 73

Query: 108 CLNLAQNVFNISFRDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS 166
            LN +  VF       ++ +N ++   ++  +   +L ++ +M    M  D  ++   + 
Sbjct: 74  LLNHSLQVFCSVIDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFVLR 133

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
           +C++ + +  G+ IHG  ++        VA ++ + Y      + A+++FD   VKD   
Sbjct: 134 SCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIEFENAHQLFDKRSVKD-LG 192

Query: 227 WNTLILGYGMLGEVDTAI-NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           W + +   G   +    I  +F  M  + +  D  ++  +L   +    ++  K      
Sbjct: 193 WPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIA 252

Query: 286 QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
               +    +    ++ L  +   + DA KL   +P E D  +W  ++ A
Sbjct: 253 IVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMP-EKDRVVWNIMIAA 301


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 159/465 (34%), Positives = 250/465 (53%), Gaps = 54/465 (11%)

Query: 3   AKSSRPAE-ASYLFHNIAEKNIVSWNAMVANFAQN---RLELKALQLVREMPIHNEF-PN 57
           A SSR  + A  +F  + E N   WN ++   A+     L+ +AL L   M       PN
Sbjct: 62  AFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPN 121

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG---------C 108
             T  +VL ACAR   LR GK+IH  I++ G + D F+ + L  MY  C          C
Sbjct: 122 RFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFC 181

Query: 109 LNL--------------------------------------AQNVFN-ISFRDEVSYNIL 129
            N+                                      A+N+F+ +  R  VS+N++
Sbjct: 182 KNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVM 241

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY+Q     E+++LF EM+   +  + V+ +  + A A + A++ GK IH    +  +
Sbjct: 242 ISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKI 301

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
                + ++++D Y++ G ID A ++F+ LP +++ +W+ +I  + M G  + AI  F  
Sbjct: 302 EIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHL 361

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAG 308
           M + GV  + V+YI IL+ACSH GLVE+G+ +F  M +   ++P   HY CMVDLLGRAG
Sbjct: 362 MGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAG 421

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
            +E+A +LI+N+P+EPD  IW ALLGAC+++ N+++G   AE L  L P   G Y+ LSN
Sbjct: 422 HLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSN 481

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +YA  G W+  ++VR  MK  + +K+PGCSW++    + +F+V D
Sbjct: 482 LYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVED 526



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 1/117 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     EA  +F  + ++N ++W+A++  FA +     A+     M      PN V 
Sbjct: 314 MYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVA 373

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
              +L AC+    +  G+   + +++  GL   +     + D+  + G L  A+ + 
Sbjct: 374 YIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELI 430


>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
          Length = 773

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 146/415 (35%), Positives = 235/415 (56%), Gaps = 5/415 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVS---WNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           +++   R  EA  +F +  E   +    W AM   +++N    +AL L  EM        
Sbjct: 117 LFSVCGRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLLYYEMVCQFGQLG 176

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           +   +  L AC+    LR G+ +HA++++   + D  + NAL  +Y++ GC   A  +F+
Sbjct: 177 NFAFSMALKACSDLGDLRTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFEEALRMFD 236

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  R+ VS+N LI G  +     E++  F  M+  GM    V+    +  CA + A+  
Sbjct: 237 GMPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGS 296

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GKEIH V ++        V NS++D Y + G +D   ++F+ +  KD  SWNTLI GY +
Sbjct: 297 GKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAI 356

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G +  A+  F+ M   G   D +++IA+L+ CSH GL + G + F+ M+ D  + PT  
Sbjct: 357 NGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDHGISPTVE 416

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYAC+VD+LGRAG +++A++++KN+P +P  +IWG+LL +CR++GNV L    A+ LF L
Sbjct: 417 HYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFEL 476

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
           +P + G Y++LSN+YA AG W+    VRE M+ R   K  GCSW+Q + ++  FV
Sbjct: 477 EPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFV 531


>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
 gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
          Length = 698

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 142/420 (33%), Positives = 249/420 (59%), Gaps = 7/420 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL-VREMPIHNEFPNSVT 60
           Y++    A++  +F  I  ++++SWN+M+  +A + ++ +A++  VR M      P+  +
Sbjct: 241 YSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYS 300

Query: 61  LTNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK----CGCLNLAQNV 115
            T+V+  C+  G   R G+ IH+ +++ GL     + NA+  MY +    C   +  +  
Sbjct: 301 FTSVVSVCSEHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCF 360

Query: 116 FNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
            ++ F+D VS+N ++ GYS     S++L  F  MR   +  D  +   A+ +C++LA ++
Sbjct: 361 DSLVFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLR 420

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G+++H + I+    ++ FV++S++  Y++ G +  A K F+      S  WN+++ GY 
Sbjct: 421 LGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADKGSSVPWNSMMFGYA 480

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G+  T  +LF  M +  V  D V+++A+LTA SHGGLV++G +  + M+     P  M
Sbjct: 481 QHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVDEGSEILNSMETRYKIPLRM 540

Query: 296 -HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYAC VDL GRAG ++ A +LI+++P +PDA +W  LLGACRI+GN+EL +  A HLF+
Sbjct: 541 EHYACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMTLLGACRIHGNMELASDVASHLFV 600

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            +P+    Y+LLS+MY+  G W + + V+++MK+R   K PG SW++ ++EV  F  +DR
Sbjct: 601 AEPRQHSTYVLLSSMYSGRGMWSDRATVQKVMKNRGLSKVPGWSWIEVKNEVHSFNADDR 660



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 188/396 (47%), Gaps = 8/396 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK  R ++A  +F  +  +N VSWNA++A +A++R   +A++L  EM      P+  T
Sbjct: 139 VYAKCGRLSDARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRVELVPDDAT 198

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              +L       +    +++H +I + G    L + NA    Y++CG    ++ +F+ I 
Sbjct: 199 FAALLATVEGPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRRIFDGIQ 258

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLAA-IKQG 177
            RD +S+N ++  Y+      E++  F   MR  G++ D+ SF   +S C+      +QG
Sbjct: 259 SRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCSEHGCDDRQG 318

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGR---IDLANKIFDCLPVKDSASWNTLILGY 234
           + IH + ++  L     V N+++  YTR      ++ A K FD L  KD+ SWN+++ GY
Sbjct: 319 RSIHSLVVKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVFKDAVSWNSMLTGY 378

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G    A+  F  MR + V  D  +  A L +CS   ++  G++    +        +
Sbjct: 379 SHHGLSSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQVHSLVIQSGFSSND 438

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE-LGAWAAEHLF 353
              + ++ +  + G++ DA K  +    +  +  W +++     +G  + +    +E L 
Sbjct: 439 FVSSSLIFMYSKCGMVGDARKSFEEAD-KGSSVPWNSMMFGYAQHGQAQTVTDLFSEMLD 497

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
              P     ++ L   Y+  G  DE S++   M++R
Sbjct: 498 HKVPLDHVTFVALLTAYSHGGLVDEGSEILNSMETR 533



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 163/331 (49%), Gaps = 7/331 (2%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           A A  +F  I   + VSWN+++A          A +L+++M       ++  L + L + 
Sbjct: 46  AAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHARGLTASTFALGSALRSA 105

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
           A       G ++ +  ++ GL  ++F  +AL D+YAKCG L+ A+ VF+ +  R+ VS+N
Sbjct: 106 AAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVSWN 165

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            LI GY+++   ++++ LF EM+ + +  D  +F   ++     +     +++HG   + 
Sbjct: 166 ALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATVEGPSWYSLMQQLHGKIAKY 225

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                L V N+ +  Y++ G    + +IFD +  +D  SWN+++  Y   G  D A+  F
Sbjct: 226 GSALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFF 285

Query: 248 -EAMREDGVGYDPVSYIAILTACS-HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
              MRE GV  D  S+ ++++ CS HG    +G+     +    ++        M+ +  
Sbjct: 286 VRMMRESGVQPDMYSFTSVVSVCSEHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYT 345

Query: 306 RAG---LMEDAVKLIKNLPVEPDANIWGALL 333
           R     +MEDA K   +L V  DA  W ++L
Sbjct: 346 RFTENCMMEDAYKCFDSL-VFKDAVSWNSML 375



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 113/255 (44%), Gaps = 19/255 (7%)

Query: 97  NALTDMYAKCG---CLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL 152
           N L   Y+  G    L  A+ VF+ I   D VS+N L+  +       ++  L  +M   
Sbjct: 30  NQLLTAYSASGPGSGLAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHAR 89

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G+     +   A+ + A     + G ++    ++  L  ++F A+++LD Y + GR+  A
Sbjct: 90  GLTASTFALGSALRSAAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDA 149

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
            ++FD +PV+++ SWN LI GY    +   A+ LF  M+   +  D  ++ A+L      
Sbjct: 150 RRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATV--- 206

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA-------GLMEDAVKLIKNLPVEPD 325
               +G  ++  MQ    K  +   A  + +L  A       G   D+ ++   +    D
Sbjct: 207 ----EGPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRRIFDGIQSR-D 261

Query: 326 ANIWGALLGACRIYG 340
              W ++LGA   +G
Sbjct: 262 LISWNSMLGAYAYHG 276


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 148/416 (35%), Positives = 237/416 (56%), Gaps = 2/416 (0%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            +Y+K  +  EA +LF N    ++ SWNA++  +  +    KAL+L   M    E  + +T
Sbjct: 1081 VYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQIT 1140

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            L N   A      L+ GK+IHA ++++G N DLF+T+ + DMY KCG +  A+ VF+ I 
Sbjct: 1141 LVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIP 1200

Query: 120  FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
              D+V++  +I G  +      +L  + +MRL  ++ D  +F   + AC+ L A++QG++
Sbjct: 1201 SPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQ 1260

Query: 180  IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            IH   ++ +     FV  S++D Y + G I+ A  +F     +  ASWN +I+G    G 
Sbjct: 1261 IHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGN 1320

Query: 240  VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
               A+  F+ M+  GV  D V++I +L+ACSH GLV +  + F  MQ +  ++P   HY+
Sbjct: 1321 AKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYS 1380

Query: 299  CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            C+VD L RAG +E+A K+I ++P E  A+++  LL ACR+  + E G   AE L  L+P 
Sbjct: 1381 CLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPS 1440

Query: 359  HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
                Y+LLSN+YA A +W+  +  R +M+    KK+PG SWV  +++V  FV  DR
Sbjct: 1441 DSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDR 1496



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 183/353 (51%), Gaps = 19/353 (5%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MY K+   + A  +F  + E +++SWN M++    + LE  ++ +   +   +  P+  T
Sbjct: 979  MYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFT 1038

Query: 61   LTNVLPACAR---GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF- 116
            + +VL AC+    G++L    +IHA  ++ G+  D F++ AL D+Y+K G +  A+ +F 
Sbjct: 1039 VASVLRACSSLEGGYYL--ATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFV 1096

Query: 117  NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            N    D  S+N ++ GY  + D  ++L L+  M+  G + D ++ + A  A   L  +KQ
Sbjct: 1097 NQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQ 1156

Query: 177  GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            GK+IH V +++  +  LFV + +LD Y + G ++ A ++F  +P  D  +W T+I G   
Sbjct: 1157 GKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVE 1216

Query: 237  LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK----- 291
             G+ + A+  +  MR   V  D  ++  ++ ACS    +E+G+    ++ A+ VK     
Sbjct: 1217 NGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGR----QIHANIVKLNCAF 1272

Query: 292  -PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             P  M    +VD+  + G +EDA  L K       A+ W A++     +GN +
Sbjct: 1273 DPFVM--TSLVDMYAKCGNIEDARGLFKRTNTRRIAS-WNAMIVGLAQHGNAK 1322



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 160/341 (46%), Gaps = 7/341 (2%)

Query: 22   NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81
            +++ WN  ++ F Q     +A+    +M       + +T   +L   A  + L  GK+IH
Sbjct: 899  DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIH 958

Query: 82   ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCS 140
              ++R GL+  + + N L +MY K G ++ A++VF  ++  D +S+N +I G + +    
Sbjct: 959  GIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEE 1018

Query: 141  ESLSLFSEMRLLGMKHDVVSFMGAISACANL-AAIKQGKEIHGVTIRKHLHTHLFVANSI 199
             S+ +F  +    +  D  +    + AC++L        +IH   ++  +    FV+ ++
Sbjct: 1019 CSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTAL 1078

Query: 200  LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
            +D Y++ G+++ A  +F      D ASWN ++ GY + G+   A+ L+  M+E G   D 
Sbjct: 1079 IDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQ 1138

Query: 260  VSYIAILTACSHGGLV--EKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317
            ++ +    A   GGLV  ++GK+    +            + ++D+  + G ME A ++ 
Sbjct: 1139 ITLVNAAKAA--GGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVF 1196

Query: 318  KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
              +P  PD   W  ++  C   G  E   +    + + K Q
Sbjct: 1197 SEIP-SPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQ 1236



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 142/321 (44%), Gaps = 29/321 (9%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            +YAK     EA  LF  +A +++V WN M+  +    LE +A+ L  E       P+ VT
Sbjct: 804  IYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVT 863

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            L  +         ++  K I      K     LF       MY   G             
Sbjct: 864  LRTL------SRVVKCKKNILELKQFKAYATKLF-------MYDDDGS------------ 898

Query: 121  RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
             D + +N  +  + Q  +  E++  F +M    +  D ++F+  ++  A L  ++ GK+I
Sbjct: 899  -DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQI 957

Query: 181  HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
            HG+ +R  L   + V N +++ Y ++G +  A  +F  +   D  SWNT+I G  + G  
Sbjct: 958  HGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLE 1017

Query: 241  DTAINLFEAMREDGVGYDPVSYIAILTACS--HGGLVEKGKKYFDEMQADSVKPTEMHYA 298
            + ++ +F  +  D +  D  +  ++L ACS   GG     + +   M+A  V  + +  A
Sbjct: 1018 ECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTA 1077

Query: 299  CMVDLLGRAGLMEDAVKLIKN 319
             ++D+  + G ME+A  L  N
Sbjct: 1078 -LIDVYSKRGKMEEAEFLFVN 1097



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 10/181 (5%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI---SFRDEVSYNILI 130
           L  GK  HARI+  G + D F+TN L  MYAKCG L+ A+ +F+    + RD V++N ++
Sbjct: 672 LSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAIL 731

Query: 131 VGYSQTSDCS-ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
              +  +D S +   LF  +R   +     +       C   A+    + +HG  ++  L
Sbjct: 732 SALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGL 791

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
              +FVA ++++ Y + G I  A  +FD + V+D   WN ++  Y     VDT +  +EA
Sbjct: 792 QWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAY-----VDTCLE-YEA 845

Query: 250 M 250
           M
Sbjct: 846 M 846



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 148/363 (40%), Gaps = 44/363 (12%)

Query: 1    MYAKSSRPAEASYLFHNIAEKN--IVSWNAMVANFA----QNRLELKALQLVREMPIHNE 54
            MYAK    + A  LF    + N  +V+WNA+++  A    ++       +L+R   +   
Sbjct: 700  MYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVST- 758

Query: 55   FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
                 TL  V   C         + +H   ++ GL +D+F+  AL ++YAK G +  A+ 
Sbjct: 759  --TRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARV 816

Query: 115  VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF--MGAISAC-AN 170
            +F+ ++ RD V +N+++  Y  T    E++ LFSE    G + D V+   +  +  C  N
Sbjct: 817  LFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKN 876

Query: 171  LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
            +  +KQ K            T LF+       Y   G               D   WN  
Sbjct: 877  ILELKQFKA---------YATKLFM-------YDDDG--------------SDVIVWNKA 906

Query: 231  ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
            +  +   GE   A++ F  M    V  D ++++ +LT  +    +E GK+    +    +
Sbjct: 907  LSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGL 966

Query: 291  KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
                    C++++  +AG +  A  +   +  E D   W  ++  C + G  E       
Sbjct: 967  DQVVSVGNCLINMYVKAGSVSRARSVFGQMN-EVDLISWNTMISGCTLSGLEECSVGMFV 1025

Query: 351  HLF 353
            HL 
Sbjct: 1026 HLL 1028


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 144/416 (34%), Positives = 231/416 (55%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +P     LF  +   ++VSW  +++ + Q   E  A++  + M      PN  T
Sbjct: 269 MYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYT 328

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V+ +CA     + G++IH  ++R GL   L + N++  +Y+KCG L  A  VF+ I+
Sbjct: 329 FAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGIT 388

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S++ +I  YSQ     E+    S MR  G K +  +    +S C ++A ++QGK+
Sbjct: 389 RKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQ 448

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +   +     V ++I+  Y++ G +  A+KIF+ + + D  SW  +I GY   G 
Sbjct: 449 VHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGY 508

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              AINLFE +   G+  D V +I +LTAC+H G+V+ G  YF  M     + P++ HY 
Sbjct: 509 SQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYG 568

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C++DLL RAG + +A  +I+++P   D  +W  LL ACR++G+V+ G W AE L  L P 
Sbjct: 569 CLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPN 628

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G +I L+N+YA  G+W EA+ +R+LMKS+   K  G SWV   D++  FV  D+
Sbjct: 629 SAGTHITLANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDQLNAFVAGDQ 684



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 160/334 (47%), Gaps = 2/334 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +  +   +F  +  +N+VSW A++A        ++ L    EM       +S T
Sbjct: 168 MYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHT 227

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
               L A A    L  GK IH + I++G +   F+ N L  MY KCG  +    +F  + 
Sbjct: 228 FAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMR 287

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VS+  LI  Y Q  +   ++  F  MR   +  +  +F   IS+CANLAA K G++
Sbjct: 288 MPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQ 347

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R  L   L VANSI+  Y++ G +  A+ +F  +  KD  SW+T+I  Y   G 
Sbjct: 348 IHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGY 407

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A +    MR +G   +  +  ++L+ C    L+E+GK+    +    +    M ++ 
Sbjct: 408 AKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSA 467

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           ++ +  + G +++A K+   + +  D   W A++
Sbjct: 468 IISMYSKCGSVQEASKIFNGMKIN-DIISWTAMI 500



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 189/429 (44%), Gaps = 53/429 (12%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-----NEFPNS 58
           K  +  +A Y+F  +  ++ +SW  ++A +       +AL L   M +H     ++F  S
Sbjct: 69  KQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMIS 128

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
           V L     ACA G  +  G+ +H   ++ GL   +F+++AL DMY K G +     VF  
Sbjct: 129 VAL----KACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEK 184

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  R+ VS+  +I G        E L  FSEM    + +D  +F  A+ A A+ + +  G
Sbjct: 185 MMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHG 244

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K IH  TI++      FV N++   Y + G+ D   ++F+ + + D  SW TLI  Y  +
Sbjct: 245 KAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQM 304

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HG-------------- 272
           GE + A+  F+ MR+  V  +  ++ A++++C+           HG              
Sbjct: 305 GEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVA 364

Query: 273 ----------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
                     GL++     F  +    +    + ++ ++ +  + G  ++A   +  +  
Sbjct: 365 NSIITLYSKCGLLKSASLVFHGITRKDI----ISWSTIISVYSQGGYAKEAFDYLSWMRR 420

Query: 323 E---PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-CGYYILLSNMYAEAGKWDE 378
           E   P+     ++L  C     +E G     HL  +   H    +  + +MY++ G   E
Sbjct: 421 EGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQE 480

Query: 379 ASKVRELMK 387
           ASK+   MK
Sbjct: 481 ASKIFNGMK 489


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 152/445 (34%), Positives = 245/445 (55%), Gaps = 36/445 (8%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE---FPNSVTLTNVLPA 67
           A+ LF  +   NI ++NA++  +A NR    A+ +  +M  H+    FP+  T   V+ +
Sbjct: 61  ATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKS 120

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSY 126
           C      R G ++H  + + G +F     NAL DMY K G L  A  VF  +S RD +S+
Sbjct: 121 CTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISW 180

Query: 127 NILIVGYSQTSDCS-------------------------------ESLSLFSEMRLLGMK 155
           N LI GY +    +                               ++L +F EM+++G++
Sbjct: 181 NSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIE 240

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
            D +S +  + ACA L A++ GK IH    +        + N++++ Y + G ID A  +
Sbjct: 241 PDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNL 300

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275
           FD L  KD  SW+T+I G    G+   AI LFE M +  V  + ++++ +L ACSH GL 
Sbjct: 301 FDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLW 360

Query: 276 EKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
           ++G KYFD M A   ++P   HY C++DLLGR+G +  A+  I  +P++PD+ IW +LL 
Sbjct: 361 DEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLS 420

Query: 335 ACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394
           +CRI+ N+++   A + L  L+P+  G Y+LL+NMYAE GKW++ S +R+L++++  KK 
Sbjct: 421 SCRIHRNLQIAVIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKT 480

Query: 395 PGCSWVQTRDEVQDFVVNDRMKTFT 419
           PG S ++  + VQ+FV +D  K F+
Sbjct: 481 PGSSSIEVNNVVQEFVSSDDSKPFS 505



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 120/233 (51%), Gaps = 3/233 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K  +   A  LF ++  + IVSW  M+  + +      AL + REM +    P+ +++
Sbjct: 187 YVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISI 246

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VLPACA+   L  GK IH    + G      + NAL +MYAKCGC++ A N+F+ +  
Sbjct: 247 IAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVE 306

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-KE 179
           +D +S++ +I G +      E++ LF EM  + +  + ++F+G + AC++     +G K 
Sbjct: 307 KDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKY 366

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
              ++   H+   +     ++D   RSG +  A      +P+K DS  WN+L+
Sbjct: 367 FDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLL 419



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 154/355 (43%), Gaps = 53/355 (14%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEV-SYNILIVGYSQT 136
           K+IHA +++  L+   FL   + D     G ++ A  +F       + +YN +I  Y+  
Sbjct: 27  KKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHN 86

Query: 137 SDCSESLSLFSEMRLLGMKH---DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
              S ++S+F +M          D  +F   I +C  +   + G ++HG+  +     H 
Sbjct: 87  RHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGADFHC 146

Query: 194 FVANSILDFYTRSG-------------------------------RIDLANKIFDCLPVK 222
              N+++D YT+ G                               +++ A ++FD +PV+
Sbjct: 147 ITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVR 206

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282
              SW T+I GYG +G    A+++F  M+  G+  D +S IA+L AC+  G +E GK  +
Sbjct: 207 TIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGK--W 264

Query: 283 DEMQADSVKPTEMHYAC--MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
             M AD          C  ++++  + G +++A  L   L VE D   W  ++G    +G
Sbjct: 265 IHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQL-VEKDVISWSTMIGGLANHG 323

Query: 341 NVELGAWAAEHLF------MLKPQHCGYY-ILLSNMYAEAGKWDEASKVRELMKS 388
                 + A  LF       + P    +  +LL+   +  G WDE  K  ++M +
Sbjct: 324 K----GYEAIQLFEEMCKVRVAPNEITFLGVLLA--CSHTGLWDEGLKYFDVMSA 372



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 1/113 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     EA  LF  + EK+++SW+ M+   A +    +A+QL  EM      PN +T
Sbjct: 287 MYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEIT 346

Query: 61  LTNVLPACARGHFLRPG-KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
              VL AC+       G K          +  ++     L D+  + GCL  A
Sbjct: 347 FLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQA 399


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 159/465 (34%), Positives = 250/465 (53%), Gaps = 54/465 (11%)

Query: 3   AKSSRPAE-ASYLFHNIAEKNIVSWNAMVANFAQN---RLELKALQLVREMPIHNEF-PN 57
           A SSR  + A  +F  + E N   WN ++   A+     L+ +AL L   M       PN
Sbjct: 62  AFSSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPN 121

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG---------C 108
             T  +VL ACAR   LR GK+IH  I++ G + D F+ + L  MY  C          C
Sbjct: 122 RFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFC 181

Query: 109 LNL--------------------------------------AQNVFN-ISFRDEVSYNIL 129
            N+                                      A+N+F+ +  R  VS+N++
Sbjct: 182 KNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVM 241

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY+Q     E+++LF EM+   +  + V+ +  + A A + A++ GK IH    +  +
Sbjct: 242 ISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKV 301

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
                + ++++D Y++ G ID A ++F+ LP +++ +W+ +I  + M G  + AI  F  
Sbjct: 302 EIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHL 361

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAG 308
           M + GV  + V+YI IL+ACSH GLVE+G+ +F  M +   ++P   HY CMVDLLGRAG
Sbjct: 362 MGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAG 421

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
            +E+A +LI+N+P+EPD  IW ALLGAC+++ N+++G   AE L  L P   G Y+ LSN
Sbjct: 422 HLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSN 481

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +YA  G W+  ++VR  MK  + +K+PGCSW++    + +F+V D
Sbjct: 482 LYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVED 526



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 1/117 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +F  + ++N ++W+A++  FA +     A+     M      PN V 
Sbjct: 314 MYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVA 373

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
              +L AC+    +  G+   + +++  GL   +     + D+  + G L  A+ + 
Sbjct: 374 YIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELI 430


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 244/418 (58%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MYAK     +   +F  ++ K++V W AM+  + Q     +AL L ++M        +S+
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
            + +V  A  +   ++    +H    RK L  +L + N++  M+ KCG    A+ VF++ 
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMM 120

Query: 120 F-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD +S+N ++ GY+Q    +E+L LF EMR    +   V+ +  +SACA L     G+
Sbjct: 121 MERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGR 180

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNTLILGYGM 236
           + H   +   +     ++N+++D Y + G ++ A  +F+ +P   +++ SWN LI GYGM
Sbjct: 181 KFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGM 240

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G    A+ LF  M+E+GV  +  ++ +IL+ACSH GL+++G+K F EM+  SV   + H
Sbjct: 241 HGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKH 300

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           +AC+VD+LGRAGL+++A  LIK +P  P   +WGALL AC+I+GN+ELG  AA +L  L+
Sbjct: 301 HACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQLE 360

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P H GYY+L+SN+YA + KW E  K+R+ MK++  KK    S ++   ++  F   D+
Sbjct: 361 PNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQ 418


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 242/447 (54%), Gaps = 34/447 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y +     EA  +F  + ++N VSW+AM+A + Q+    ++L+L   M      PN   
Sbjct: 259 LYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISC 318

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG------------- 107
            +++L A A    L+ G  IH  + + G   D+F++++L DMY KCG             
Sbjct: 319 FSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTIL 378

Query: 108 ------------------CLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                              +  A+ +FNI   R+ VS++ +I G+       E   +F+E
Sbjct: 379 EKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNE 438

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M LLG   +  +F   + ACA+ A++ +GK +HG  ++  +    +V  ++ D Y +SG 
Sbjct: 439 MILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGD 498

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM-REDGVGYDPVSYIAILT 267
           I+ + K+F+ +P K+  SW  +I G    G  + ++ LFE M +   +  + V ++A+L 
Sbjct: 499 IESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLF 558

Query: 268 ACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
           ACSH GLV+KG  YF+ M+A   +KP   H+ C+VD+L RAG + +A + I ++P +P+ 
Sbjct: 559 ACSHSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPET 618

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
           N W ALL  C+ Y N EL    A  L+ +  ++C  Y+LLSN+YA AG+W +  KVR+LM
Sbjct: 619 NAWAALLSGCKTYKNEELAERVAGKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLM 678

Query: 387 KSREAKKNPGCSWVQTRDEVQDFVVND 413
           K++  KK+ GCSWV+ RD V  F   D
Sbjct: 679 KAKGLKKSGGCSWVEIRDRVHSFYSED 705



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 115/485 (23%), Positives = 207/485 (42%), Gaps = 110/485 (22%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           + K  R  E+ + F     +N+VSW A ++ + QN   ++A++L  ++      PN VT 
Sbjct: 128 FMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTF 187

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---- 117
           T+V+ ACA       G  +   I++ G   DL ++N+L  +  + G ++LA+ VF+    
Sbjct: 188 TSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEE 247

Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                       +  R+EVS++ +I  Y Q+    ESL LF  M
Sbjct: 248 KDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRM 307

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
              G K ++  F   +SA A++ A++ G  IHG   +      +FV++S++D Y + G  
Sbjct: 308 IQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGET 367

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR-EDGVGYDPV-------- 260
                +FD +  K+  SWN ++ GY + G ++ A  LF  M   + V +  +        
Sbjct: 368 KDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCE 427

Query: 261 ----------------------SYIAILTACS-----------HGGLV------------ 275
                                 ++ ++L AC+           HG +V            
Sbjct: 428 QFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGT 487

Query: 276 ------------EKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--- 320
                       E  KK F+ M     K  E+ +  M+  L  +GL E+++ L + +   
Sbjct: 488 ALTDMYAKSGDIESSKKVFNRMP----KKNEVSWTAMIQGLAESGLAEESLTLFEEMEKT 543

Query: 321 -PVEPDANIWGALLGACRIYGNVELGAW---AAEHLFMLKPQHCGYYILLSNMYAEAGKW 376
             + P+  ++ A+L AC   G V+ G W   + E ++ LKP+   ++  + +M + AG+ 
Sbjct: 544 SSIAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKG-RHFTCVVDMLSRAGRL 602

Query: 377 DEASK 381
            EA +
Sbjct: 603 FEAEE 607



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/340 (20%), Positives = 133/340 (39%), Gaps = 70/340 (20%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLN----------------------------- 90
           T  ++L        +R G  +HA + + G++                             
Sbjct: 23  TCVSLLKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQISKDF 82

Query: 91  --FDLFLTNALTDMYAKCGCLNLAQNVFN-------IS---------------------- 119
             FDL + N +     + G L+ A+ +F+       IS                      
Sbjct: 83  DGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFE 142

Query: 120 ---FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
              F++ VS+   I GY Q     E++ LF ++    +K + V+F   + ACANL     
Sbjct: 143 RNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGL 202

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G  + G+ ++      L V+NS++    R G I LA ++FD +  KD  SW  ++  Y  
Sbjct: 203 GMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVE 262

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
           + E+  A  +F+ M +     + VS+ A++      G  E+  + F  M  +  KP    
Sbjct: 263 MDELGEARRIFDEMPQ----RNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISC 318

Query: 297 YACMVDLLGRAGLMEDAVKL---IKNLPVEPDANIWGALL 333
           ++ ++  L     ++  + +   +  +  E D  +  +L+
Sbjct: 319 FSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLI 358



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 10/200 (5%)

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           L V N ++    + G +D A K+FD +P  +  SW  LI G+   G V  ++  FE    
Sbjct: 87  LVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERNPF 146

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL---LGRAGL 309
             V    VS+ A ++     G   +  K F ++    VKP ++ +  +V     LG  GL
Sbjct: 147 QNV----VSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGL 202

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNM 369
               + LI     E D  +  +L+  C   G + L   A E    ++ +    +  + ++
Sbjct: 203 GMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHL---AREVFDRMEEKDVVSWTAILDL 259

Query: 370 YAEAGKWDEASKVRELMKSR 389
           Y E  +  EA ++ + M  R
Sbjct: 260 YVEMDELGEARRIFDEMPQR 279


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 143/448 (31%), Positives = 249/448 (55%), Gaps = 35/448 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSV 59
           MYA S    +A  LF  +A++++VSW  +V  +A+  L  +A ++   M +    +PN V
Sbjct: 175 MYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEV 234

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
           TL     A  +   L  G+ +H  ++  G+   + L NAL DM+ KCGC+  A+ +F+  
Sbjct: 235 TLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGM 294

Query: 118 ------------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
                                         I  R+ VS++ ++  YSQ +   E++ +F+
Sbjct: 295 PIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFN 354

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH-LHTHLFVANSILDFYTRS 206
           +M   G++    + +  +SACA L  +  G+ ++   I  H +   + ++N+ +D + + 
Sbjct: 355 DMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKC 414

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           G +  A+++F  +  K+  SWNT+I+ + + G+ + A++LF+  +  G+  D ++YI +L
Sbjct: 415 GDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVL 474

Query: 267 TACSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD 325
           +ACSH GLV +G+ +F EM+    ++P   HYACM+DLLG+ GL+E+A ++ +++PV  D
Sbjct: 475 SACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGAD 534

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385
              WGALL ACR++GNVE+G  AA+ L  L P   G Y+L+S +YA   KW +   +R +
Sbjct: 535 EAGWGALLNACRMHGNVEIGKCAADKLVGLDPSDSGIYVLMSQIYASKSKWGQVKMIRTV 594

Query: 386 MKSREAKKNPGCSWVQTRDEVQDFVVND 413
           M+ R  KKNPGCS ++   +  +F+  D
Sbjct: 595 MRDRGVKKNPGCSSIEVDGKFHEFLAAD 622



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 101/217 (46%), Gaps = 5/217 (2%)

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI-RK 187
           ++ G+ +    + +L+LF  +    +  D  + + A+ A    ++    + IH V   R 
Sbjct: 103 MMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKAATTSSS--PAEAIHCVAFKRG 160

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            +   + V N+++  Y  S  +  A K+FD +  +D  SW TL+ GY   G  D A  +F
Sbjct: 161 FIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVF 220

Query: 248 EAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
             M   G G+ + V+ +A  +A    GL+  G+     +    V+ +      +VD+ G+
Sbjct: 221 CRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGK 280

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            G +  A ++   +P++ D   W +++ A    G++E
Sbjct: 281 CGCVASAKEIFDGMPIK-DVYSWTSMVSAYAKCGDLE 316


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 152/425 (35%), Positives = 241/425 (56%), Gaps = 14/425 (3%)

Query: 2   YAKSSRPAEASYLFHNI-AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y+K S   EA  LF    A  N+V+W AM+  F QN    KA+ L  +M      PN  T
Sbjct: 351 YSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFT 410

Query: 61  LTNVLPACARGHFLRPGK---EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF- 116
            + VL         +P     ++HA+II+        +  AL D Y K G +  +  VF 
Sbjct: 411 YSTVLAG-------KPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFY 463

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA-IK 175
           +I  +D V+++ ++ G +QT D  +++ +F ++   G+K +  +F   I+AC++ AA ++
Sbjct: 464 SIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVE 523

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK+IH   ++      L V++++L  Y++ G I+ A K+F     +D  SWN++I GYG
Sbjct: 524 HGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYG 583

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
             G+   A+ +F+ M+  G+  D V++I +LTAC+H GLVE+G+KYF+ M  D  +    
Sbjct: 584 QHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKI 643

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HY+CMVDL  RAG+ + A+ +I  +P      IW  LL ACR++ N+ELG  AAE L  
Sbjct: 644 EHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVS 703

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           L+P     Y+LLSN++A AG W+E + VR+LM  R+ KK  GCSW++ ++ +  F+  D 
Sbjct: 704 LQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDV 763

Query: 415 MKTFT 419
              F+
Sbjct: 764 SHPFS 768



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 158/341 (46%), Gaps = 19/341 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+    +   +F  +  KN+VSW ++++ +A+N L  + + L+ +M +    PN  T
Sbjct: 148 MYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFT 207

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL A A    +  G ++HA I++ G  F  F+ NAL  MY K   +  A+ VF+ + 
Sbjct: 208 FATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMV 267

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD V++NI+I GY+      E   +F  MRL G+K     F  A+  C+    +   K+
Sbjct: 268 VRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQ 327

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL-PVKDSASWNTLILGYGMLG 238
           +H   ++        +  +++  Y++   +D A K+F       +  +W  +I G+    
Sbjct: 328 LHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNN 387

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK------P 292
             + A++LF  M  +GV  +  +Y  +L          K      ++ A  +K      P
Sbjct: 388 NNEKAVDLFCQMSREGVRPNHFTYSTVLAG--------KPSSLLSQLHAQIIKAYYEKVP 439

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +      ++D   + G + ++ ++  ++P + D   W A+L
Sbjct: 440 SVA--TALLDAYVKTGNVVESARVFYSIPAK-DIVAWSAML 477



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 159/342 (46%), Gaps = 23/342 (6%)

Query: 6   SRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVL 65
           SRP  A  LF     K+I  +N ++ +F++N  + +AL L +++       + +TL+  L
Sbjct: 52  SRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCAL 111

Query: 66  PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEV 124
             C        G+++H + ++ G   D+ +  +L DMY K       + +F+ +  ++ V
Sbjct: 112 KVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVV 171

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           S+  L+ GY++     E + L ++M++ G+  +  +F   + A A+ + I+ G ++H + 
Sbjct: 172 SWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMI 231

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
           ++       FV N+++  Y +S  +  A  +FD + V+DS +WN +I GY  +G      
Sbjct: 232 VKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGF 291

Query: 245 NLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQADSVKPT 293
            +F  MR  GV      +   L  CS           H G+V+ G ++  +++       
Sbjct: 292 QMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT------ 345

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
               A MV    +   +++A KL        +   W A++G 
Sbjct: 346 ----ALMVT-YSKCSSVDEAFKLFSMADAAHNVVTWTAMIGG 382



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F    E++IVSWN+M+  + Q+    KAL++ + M       + VT
Sbjct: 550 MYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVT 609

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLT--NALTDMYAKCGCLNLAQNVFN 117
              VL AC     +  G E +  I+ K  + D  +   + + D+Y++ G  + A ++ N
Sbjct: 610 FIGVLTACTHAGLVEEG-EKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIIN 667



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 99/249 (39%), Gaps = 49/249 (19%)

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
           I+  LH H F+ +  L F +   R   A+++FD  P+KD + +N L+  +        A+
Sbjct: 30  IKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREAL 89

Query: 245 NLFEAMREDGVGYDPVSYIAILTACS----------------HGGLV------------- 275
           +LF+ +   G+G D ++    L  C                   G +             
Sbjct: 90  HLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMY 149

Query: 276 ------EKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE---PD- 325
                 E G+  FDEM   +V    + +  ++    R GL ++ + LI  + +E   P+ 
Sbjct: 150 MKTEDFEDGRGIFDEMGIKNV----VSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNG 205

Query: 326 ---ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382
              A + GAL     I G V++ A   ++ F      C   I    MY ++    +A  V
Sbjct: 206 FTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALIC---MYLKSEMVGDAEAV 262

Query: 383 RELMKSREA 391
            + M  R++
Sbjct: 263 FDSMVVRDS 271


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 135/415 (32%), Positives = 235/415 (56%), Gaps = 2/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y +   P +A  +F  +   N++SWN+M+  + Q      ALQL R M      P+ V 
Sbjct: 406 VYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVN 465

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
              +L AC  G   R  K +H  +   GL     +  +L +MYAK G L++A+ +     
Sbjct: 466 FMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMD 525

Query: 121 RDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             +++ +N+LI GY+      E+L  + +++L  +  D V+F+  ++AC +  ++ +GK 
Sbjct: 526 EQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKM 585

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +   L + + V N++ + Y++ G ++ A +IFD +P++ + SWN ++  Y   GE
Sbjct: 586 IHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGE 645

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            +  + L   M ++GV  + ++++++L++CSH GL+ +G +YF  +  D  ++    HY 
Sbjct: 646 SEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYG 705

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGRAG +++A K I  +P+EP    W +LLGACR+  +++ G  AA  L  L P 
Sbjct: 706 CLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPG 765

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +    ++LSN+Y+E G W  A+K+R  M SR  KK PG S +Q +++V +F V D
Sbjct: 766 NSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRD 820



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 185/344 (53%), Gaps = 5/344 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++     +A   F  I  +N+VSWN M++ ++  +   +AL L   M +    PN++T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL +C     LR G  +HA  + +G   +  +  AL +MY KCG L  AQ+VF  ++
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 120 FRDEVSYNILIVGYSQTSDCSE-SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            ++ V++N ++  YS    C + ++ LF+ M L G+K +V++F+  +++  +  A+++GK
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 179 EIHGVTIRKHLHT-HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            IH   +R+  H+  +FV  ++++ YT+ G +  A K+FD +P +   +WN++I  Y + 
Sbjct: 181 FIHSC-VRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSIS 239

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
                A  +F+ M+++G   D V++++IL AC +   ++ GK   + +   S +      
Sbjct: 240 ERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVG 299

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
             ++ +  R    EDA ++   +  + +   W A++ A   +G+
Sbjct: 300 TALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADHGH 342



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 166/344 (48%), Gaps = 2/344 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+   P +A+ +F  + + N+++W+A++  FA +    +AL+  R M      PN VT
Sbjct: 305 MYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVT 364

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L        L     IH  I   GL+    + NAL ++Y +C   + A+ VF+ + 
Sbjct: 365 FISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLE 424

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             + +S+N +I  Y Q     ++L LF  M+  G++ D V+FM  + AC   +  +  K 
Sbjct: 425 LPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKL 484

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H       L     V  S+++ Y ++G +D+A  I   +  +   +WN LI GY + G 
Sbjct: 485 VHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGR 544

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+  ++ ++ + +  D V++I++L AC+    + +GK          +    +    
Sbjct: 545 SREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNA 604

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           + ++  + G ME+A ++  ++P+   A  W  +L A   +G  E
Sbjct: 605 LTNMYSKCGSMENARRIFDSMPIRS-AVSWNGMLQAYAQHGESE 647



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 159/340 (46%), Gaps = 2/340 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K     +A  +F  +  +++ +WN+M++ ++ +    +A  + + M    E  + VT 
Sbjct: 205 YTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTF 264

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            ++L AC     L+ GK +   I       DLF+  AL  MYA+C     A  VF  +  
Sbjct: 265 LSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQ 324

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
            + ++++ +I  ++    C E+L  F  M+  G+  + V+F+  ++     + +++   I
Sbjct: 325 TNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRI 384

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H +     L     + N++++ Y R    D A  +FD L + +  SWN++I  Y      
Sbjct: 385 HLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERH 444

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           D A+ LF  M++ G+  D V+++ IL AC+ G      K     ++   +  + +    +
Sbjct: 445 DDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSL 504

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           V++  +AG ++ A  +++ +  E     W  L+    ++G
Sbjct: 505 VNMYAKAGELDVAEVILQEMD-EQQITAWNVLINGYALHG 543


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 175/466 (37%), Positives = 254/466 (54%), Gaps = 68/466 (14%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN----------------RLEL---- 40
           MYAK  +  +AS +F  +  K++V+WNAMV  ++QN                ++EL    
Sbjct: 83  MYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIELDVVT 142

Query: 41  ---------------KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH---A 82
                          +A+ + R+M      PN VTL ++L ACA    L  GKE H    
Sbjct: 143 WSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSV 202

Query: 83  RIIRKGLNFD----LFLTNALTDMYAKCGCLNLAQNVFN---ISFRDEVSYNILIVGYSQ 135
           + I KG + D    L + NAL DMYAKC  L +A+ +F+      RD V++ ++I GY+Q
Sbjct: 203 KFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQ 262

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAIS----ACANLAAIKQGKEIHGVTIRKHL-- 189
             D + +L LFSEM    + + +V     IS    ACA LAA+K GK+IH   +R+    
Sbjct: 263 HGDANHALQLFSEM--FKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRID 320

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
              LFVAN ++D Y++SG +D A  +FD +  +++ SW +L+ GYGM G          A
Sbjct: 321 SDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGA---------A 371

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAG 308
           +  DG+     +++ +L ACSH G+V++G   F  M  D  V P   HYACM DL GRAG
Sbjct: 372 LVLDGI-----TFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPGVEHYACMADLFGRAG 426

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
            + +A +LI ++ +EP   +W ALL ACR + N EL  +AA+ L  LK  + G Y LLSN
Sbjct: 427 RLCEATRLINDMSMEPTPVVWIALLSACRTHSNEELAEFAAKKLLELKADNDGTYTLLSN 486

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +YA A +W + +++R LMK    KK PG SWV+ R  ++ F V DR
Sbjct: 487 IYANARRWKDVARIRYLMKRTGIKKRPGWSWVKGRKGMETFYVGDR 532



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 195/433 (45%), Gaps = 96/433 (22%)

Query: 24  VSWNAMVANFAQNRLELKALQLVREMPI-HNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82
           VSWN++V+ ++   +   A+ L REM + +   P++V + N+LP      FL        
Sbjct: 24  VSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILPVSG---FL-------- 72

Query: 83  RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSE 141
                      F+ NAL DMYAKCG +  A  VF  + F+D V++N ++ GYSQ     +
Sbjct: 73  ---------GFFVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFED 123

Query: 142 SLSLFSEMRLLGMKHDVVSF-----------------------------------MGAIS 166
           +LSLF +MR   ++ DVV++                                   M  +S
Sbjct: 124 ALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLS 183

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTH-------LFVANSILDFYTRSGRIDLANKIFD-- 217
           ACA++ A+  GKE H  +++  L          L V N+++D Y +   +++A  +FD  
Sbjct: 184 ACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEI 243

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR--EDGVGYDPVSYIAILTACSHGGLV 275
           C   +D  +W  +I GY   G+ + A+ LF  M   ++ +  +  +   +L AC+    +
Sbjct: 244 CPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAAL 303

Query: 276 EKGKKYFDEMQADSVKPTEMHYA--CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           + GK+    +   S   +++ +   C++D+  ++G ++ A  +  ++  + +A  W +LL
Sbjct: 304 KFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS-KRNAVSWTSLL 362

Query: 334 G---------------------ACRIYGNVELGA---WAAEHLFMLKPQHCGYYILLSNM 369
                                 AC   G V+ G    +     F++ P    +Y  ++++
Sbjct: 363 TGYGMHGAALVLDGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPG-VEHYACMADL 421

Query: 370 YAEAGKWDEASKV 382
           +  AG+  EA+++
Sbjct: 422 FGRAGRLCEATRL 434


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 142/415 (34%), Positives = 257/415 (61%), Gaps = 1/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            Y+KS  P ++   F +  +K+  +W+++++ FAQN L   +L+ +++M   N  P+   
Sbjct: 59  FYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHV 118

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +   +CA       G+ +H   ++ G + D+F+ ++L DMYAKCG +  A+ +F+ + 
Sbjct: 119 LPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMP 178

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ V+++ ++ GY+Q  +  E+L LF E     +  +  SF   IS CAN   ++ G++
Sbjct: 179 QRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQ 238

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG++I+    +  FV +S++  Y++ G  + A ++F+ +PVK+   WN ++  Y     
Sbjct: 239 IHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSH 298

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
               I LF+ M+  G+  + ++++ +L ACSH GLV++G+ YFD+M+   ++PT+ HYA 
Sbjct: 299 TQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESRIEPTDKHYAS 358

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VD+LGRAG +++A+++I N+P++P  ++WGALL +C ++ N EL A+AA+ +F L P  
Sbjct: 359 LVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVS 418

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            G +I LSN YA  G++++A+K R+L++ R  KK  G SWV+ R++V  F   +R
Sbjct: 419 SGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGER 473



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 164/350 (46%), Gaps = 11/350 (3%)

Query: 49  MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
           +P HN       + ++L + AR      G ++H  +++ GL+    + N L + Y+K   
Sbjct: 10  VPCHN----YNQICDLLLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQL 65

Query: 109 LNLAQNVFNISFRDEVSYNILIVG-YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
              ++  F  S +   +    I+  ++Q      SL    +M    ++ D      A  +
Sbjct: 66  PFDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKS 125

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           CA L+    G+ +H ++++      +FV +S++D Y + G I  A K+FD +P ++  +W
Sbjct: 126 CAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTW 185

Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
           + ++ GY  +GE + A+ LF+    + +  +  S+ ++++ C++  L+E G++       
Sbjct: 186 SGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIK 245

Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE--LG 345
            S   +    + +V L  + G+ E A ++   +PV+ +  IW A+L A   + + +  + 
Sbjct: 246 SSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVK-NLGIWNAMLKAYAQHSHTQKVIE 304

Query: 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395
            +    L  +KP    +  +L N  + AG  DE     + MK  E++  P
Sbjct: 305 LFKRMKLSGMKPNFITFLNVL-NACSHAGLVDEGRYYFDQMK--ESRIEP 351


>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 149/418 (35%), Positives = 238/418 (56%), Gaps = 6/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY+  S P+ A  +  +  +   + VSWN ++A +    L  KALQ   +M       + 
Sbjct: 137 MYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDD 196

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           VTL N L ACAR   ++ GK  HA ++  G   + ++ ++L  MYAKCG +  A+ +F+ 
Sbjct: 197 VTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDG 256

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  R+ V +  +I GY+Q     E++ LF +M++ G+K D  +    +S+C  + A+  G
Sbjct: 257 MPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLG 316

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + +H       L   + V NS++D Y++ G I  A  IF  +  +D+ SW T+I+G+   
Sbjct: 317 RYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSW-TVIMGFAAN 375

Query: 238 GEVDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
           G    A++LF  M E+G V  + ++++ +LT+CSHGGLVE+G ++F  M +   + P   
Sbjct: 376 GLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIE 435

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY CMVDLLGRA L+ +A + IK +P+ PDA +W +LL ACR  G V L  + AE + +L
Sbjct: 436 HYGCMVDLLGRAKLLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVL 495

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +P  CG  +LLS +YA   +W +A+KVR  + S    K PGCS+++    V +F   D
Sbjct: 496 EPNKCGGDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVDGCVHEFFAGD 553



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 125/234 (53%), Gaps = 8/234 (3%)

Query: 49  MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
           MPI N      +L+  L   AR   +  G ++HA  ++ GL+ D F+ N L +MY+ C  
Sbjct: 89  MPIDN-----YSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSY 143

Query: 109 LNLAQNVFNISFR---DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI 165
            + A++V + + +   D VS+N +I GY      +++L  FS+M    +  D V+ + A+
Sbjct: 144 PSTARSVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNAL 203

Query: 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
            ACA    +K GK  H + +      + ++ +S++  Y + G+++ A +IFD +P +++ 
Sbjct: 204 VACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAV 263

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
            W ++I GY  LG+   AI LF  M+  GV  D  +   ++++C   G ++ G+
Sbjct: 264 CWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGR 317


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 145/418 (34%), Positives = 232/418 (55%), Gaps = 7/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  +  +++++WN M++ +A+     +AL+L + M  ++  PN VT
Sbjct: 207 MYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVT 266

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC-LNLAQNVFN-I 118
              +L AC     L  G+ IH ++   G   DL + N L +MY KC   L  A+ VF  +
Sbjct: 267 FIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERL 326

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD +++NILIV Y Q     ++L +F +M+L  +  + ++    +SACA L A +QGK
Sbjct: 327 RTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGK 386

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H +         + + NS+++ Y R G +D    +F  +  K   SW+TLI  Y   G
Sbjct: 387 AVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHG 446

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
              T +  F  + ++G+  D V+ ++ L+ACSHGG++++G + F  M  D  + P   H+
Sbjct: 447 HSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHF 506

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLL RAG +E A  LI ++P  PDA  W +LL  C+++ + +  A  A+ LF L+ 
Sbjct: 507 LCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELES 566

Query: 358 Q-HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +       LLSN+YAEAG+WD+  K R     R A+KNPGCS+++  D V +FV  D+
Sbjct: 567 EDEHSTVTLLSNVYAEAGRWDDVRKTR---NRRAARKNPGCSYIEINDTVHEFVAGDK 621



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 180/349 (51%), Gaps = 7/349 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    A+A  +FH I   N VSW  +VA FA+N    +AL   R M +    P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
               +  C+    L+ G+ +HA I+   L  FD+ L  AL  MYA+C  L LA+  F+ +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEM---RLLGMKHDVVSFMGAISACANLAAIK 175
             +  V++N LI GYS+  D   +L ++ +M      GMK D ++F  A+ AC+ +  I 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           QG+EI   T+     +   V N++++ Y++ G ++ A K+FD L  +D  +WNT+I GY 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G    A+ LF+ M  +    + V++I +LTAC++   +E+G+    +++    +   +
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLV 300

Query: 296 HYACMVDLLGR-AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
               ++++  + +  +E+A ++ + L    D   W  L+ A   YG  +
Sbjct: 301 IGNVLLNMYTKCSSSLEEARQVFERLRTR-DVITWNILIVAYVQYGQAK 348


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 148/436 (33%), Positives = 237/436 (54%), Gaps = 33/436 (7%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F  +    +  WN  + +FA+      A+ L   +   +  P+  T + VL AC+R
Sbjct: 66  AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              +R GK +H  + + GL  ++FL N +  +YA CG + +A+ VF+ +  RD +++NI+
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185

Query: 130 IV-------------------------------GYSQTSDCSESLSLFSEMRLLGMKHDV 158
           I                                GY+Q     E++ LF EM   G+  + 
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
           V+ +  + ACA++  +  G+ IH  + R     ++ V N+++D Y + G ++ A +IFD 
Sbjct: 246 VTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDN 305

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +  +   SW+ +I G    G  + A+ LF  M   GV  + V++I IL ACSH G+VEKG
Sbjct: 306 MEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKG 365

Query: 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
           +KYF  M  D  + P   HY CMVDL  RAGL+++A + I N+P+ P+  +WGALLG C+
Sbjct: 366 RKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCK 425

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           ++ N++L   A  HL  L P + GYY++LSN+YAEAG+W++ ++VR+LM+ R  KK PG 
Sbjct: 426 VHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGW 485

Query: 398 SWVQTRDEVQDFVVND 413
           S +     V +FV  D
Sbjct: 486 SSIMVEGVVYNFVAGD 501



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 148/301 (49%), Gaps = 11/301 (3%)

Query: 9   AEASY-LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPA 67
           AE +Y LF  + E+N+ SW +M+  +AQ     +A+ L  EM      PN VT+  VL A
Sbjct: 195 AEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVA 254

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSY 126
           CA    L  G+ IH    R G   ++ + N L DMY KCGCL  A  +F N+  R  VS+
Sbjct: 255 CADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSW 314

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           + +I G +      ++L+LF++M   G+K + V+F+G + AC+++  +++G++      R
Sbjct: 315 SAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTR 374

Query: 187 KH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KDSASWNTLILGYGMLGEVDTAI 244
            + +   +     ++D ++R+G +  A++    +P+  +   W  L+ G     +V   I
Sbjct: 375 DYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGG----CKVHKNI 430

Query: 245 NLFEAMREDGVGYDPVS---YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            L E         DP++   Y+ +    +  G  E   +    M+   VK T    + MV
Sbjct: 431 KLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMV 490

Query: 302 D 302
           +
Sbjct: 491 E 491



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 146/336 (43%), Gaps = 45/336 (13%)

Query: 42  ALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPG--KEIHARIIRKGLNFDLFLTNAL 99
           +L L+   P+H+  P++  L N         F  P   K++HA +++          + +
Sbjct: 4   SLSLLHVSPLHHR-PSTHLLHN---------FTSPFELKQLHAHLLKTNSPLSSLPLSRV 53

Query: 100 TDMYAKCGCLNLAQNVFNISFRDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
             + A     + A+ +F +    EV+ +N  +  +++    ++++SLF  +R   +  D 
Sbjct: 54  ASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDH 113

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
            +    + AC+ L  ++ GK +HG   +  L +++F+ N I+  Y   G I +A K+FD 
Sbjct: 114 YTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDK 173

Query: 219 LPVKDSASWNTLIL-------------------------------GYGMLGEVDTAINLF 247
           +P +D  +WN +I                                GY   G+   AI+LF
Sbjct: 174 MPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLF 233

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
             M + G+  + V+ +A+L AC+  G +  G++  D       +        ++D+  + 
Sbjct: 234 LEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKC 293

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           G +EDA ++  N+  E     W A++     +G  E
Sbjct: 294 GCLEDACRIFDNME-ERTVVSWSAMIAGLAAHGRAE 328



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F N+ E+ +VSW+AM+A  A +     AL L  +M      PN+VT
Sbjct: 289 MYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVT 348

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQ 113
              +L AC+    +  G++  A + R  G+   +     + D++++ G L  A 
Sbjct: 349 FIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAH 402


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 145/418 (34%), Positives = 241/418 (57%), Gaps = 3/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F++I + ++V+WNA++A FA      ++     +M      PN VT
Sbjct: 345 MYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVT 404

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + ++L AC+    L  G ++H+ I++ G N D+ + N+L  MY+KC  LN A  VF +I 
Sbjct: 405 VLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIG 464

Query: 120 FR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            + D VS+N L+    Q +   E L L   M    +K D V+    + +   +A+ + G 
Sbjct: 465 NKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGS 524

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH   ++  L+  + V+N++++ YT+ G ++ A K+FD +   D  SW++LI+GY   G
Sbjct: 525 QIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAG 584

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A  LF  MR  GV  + ++++ ILTACSH G+VE+G K +  MQ D  + PT+ H 
Sbjct: 585 CGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHC 644

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +CMVDLL RAG ++ A   IK +P  PD  +W  LL AC+++GN+E+G  AAE++  + P
Sbjct: 645 SCMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDP 704

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
            +    ++L N++A +G W + +++R  M+  +  K PG SW++ +D+V  F+  D +
Sbjct: 705 SNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVHVFLAEDNL 762



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 182/382 (47%), Gaps = 14/382 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F ++  KN+VSW +M++ +++   E  A+ L  +M      P+  T
Sbjct: 142 MYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFT 201

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +++ +C+     +  +++HA +++     DL   NAL  MY K   +  A NVF+ I 
Sbjct: 202 FGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRII 261

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM-KHDVVSFMGAISACANLAAIKQGK 178
            +D +S+  +I G+SQ     E+L  F EM    + + +   F  A SAC+ L     G+
Sbjct: 262 IKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGR 321

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IHG+ I+  L + LF   S+ D Y + G ++ A  +F  +   D  +WN +I G+  + 
Sbjct: 322 QIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVS 381

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG---KKYFDEMQADSVKPTEM 295
               + + F  MR  G+  + V+ +++L ACS   ++  G     Y  +M  +   P   
Sbjct: 382 NAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPV-- 439

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM- 354
               ++ +  +   + DA+++ +++  + D   W  LL AC             + +F  
Sbjct: 440 -CNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFAS 498

Query: 355 -LKPQHCGYYILLSNMYAEAGK 375
            +KP H    + L+N+   +G+
Sbjct: 499 RIKPDH----VTLTNVLVSSGQ 516



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 140/285 (49%), Gaps = 13/285 (4%)

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           SVT T+++ AC+    L  G++IH  ++      D+ L N +  MY KCG L  A+N+F+
Sbjct: 98  SVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFD 157

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  ++ VS+  +I GYS+  +   +++L+ +M   G   D  +F   + +C+ L   K 
Sbjct: 158 SMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKL 217

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            +++H   ++      L   N+++  YT+  ++  A  +F  + +KD  SW ++I G+  
Sbjct: 218 ARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQ 277

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVK--- 291
           LG    A+  F  M    V Y P  ++  +  +ACS     + G+    ++    +K   
Sbjct: 278 LGYELEALCHFREMLSQSV-YQPNEFVFGSAFSACSKLLEPDCGR----QIHGLCIKFGL 332

Query: 292 PTEMHYAC-MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            +++   C + D+  + G +E A  +  ++  +PD   W A++  
Sbjct: 333 GSDLFAGCSLCDMYAKCGFLESARTVFYHIE-KPDLVAWNAIIAG 376


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 148/415 (35%), Positives = 239/415 (57%), Gaps = 6/415 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+   R  +AS +F  +  +++VSW  +++ + +  L  +A+ L   M +    PN+ T 
Sbjct: 79  YSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRMDVE---PNAATF 135

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            +VL AC R  +L  GK IH    +      L ++NAL DMY KCGCL  A+ VF+ ++ 
Sbjct: 136 VSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAE 195

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D VS+  +I G  Q +   E+L LF +M+  G++ D +     +SACA L A+  G+ +
Sbjct: 196 KDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWV 255

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H    RK +   + +  +++D Y + G I+++ +IF+ +P K+  +WN L+ G  M G  
Sbjct: 256 HEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHA 315

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM--QADSVKPTEMHYA 298
              + LFE M   G+  + V+++AILTAC H GLV +G++YF+ M  Q  ++ P   HY 
Sbjct: 316 YKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYG 375

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLL RA L+++A++L K +P+ PD  I GALL AC+  GN EL     +    L   
Sbjct: 376 CMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGNTELPQEILDRFVELDSH 435

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             G Y+LLSN++A   +WD+ +++R LMK +  KK PG + ++   +  +F+V D
Sbjct: 436 DSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTVIELDGKAHEFIVGD 490



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 157/317 (49%), Gaps = 5/317 (1%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           +NA+V+ +A       A  + R +      P+  T   VL +CA+   +  G+++H  II
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLS 144
           + G   ++++ N+L   Y+ C     A  VF+ +  RD VS+  +I GY +     E++ 
Sbjct: 62  KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
           LF  M +   + +  +F+  + AC     +  GK IHG++ +      L V+N+++D Y 
Sbjct: 122 LFLRMDV---EPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYV 178

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           + G +  A ++FD L  KD  SW ++I G         A+ LF+ M+  G+  D +   +
Sbjct: 179 KCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTS 238

Query: 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           +L+AC+  G ++ G+   + +   ++K        MVD+  + G +E ++++   +P   
Sbjct: 239 VLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMP-HK 297

Query: 325 DANIWGALLGACRIYGN 341
           +   W ALL    ++G+
Sbjct: 298 NVLTWNALLNGLAMHGH 314



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 105/180 (58%), Gaps = 1/180 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  +AEK+IVSW ++++   Q     +AL+L ++M      P+ + 
Sbjct: 176 MYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGII 235

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           LT+VL ACAR   L  G+ +H  I RK + +D+ +  A+ DMYAKCGC+ ++  +FN + 
Sbjct: 236 LTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMP 295

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ +++N L+ G +      + L LF EM  +GM+ + V+F+  ++AC +   + +G++
Sbjct: 296 HKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQ 355


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 145/419 (34%), Positives = 242/419 (57%), Gaps = 7/419 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            Y+K++ P  +  LF +   K+  +W++++++FAQN L L AL+  R M  H   P+  T
Sbjct: 51  FYSKTNLPHSSLKLFDSFPHKSATTWSSVISSFAQNDLPLPALRFFRRMLRHGLLPDDHT 110

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L     + A    L     +HA  ++   + D+F+ ++L D YAKCG +NLA+ VF+ + 
Sbjct: 111 LPTAAKSVAALSSLPLALSLHALSLKTAHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMP 170

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV----VSFMGAISACANLAAIK 175
            ++ VS++ +I GYSQ     E+L+LF   R L   +D+     +    +  C+     +
Sbjct: 171 HKNVVSWSGMIYGYSQMGLDEEALNLFK--RALEQDYDIRVNDFTLSSVLRVCSASTLFE 228

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK++HG+  +    +  FVA+S++  Y++ G ++   K+F+ + V++   WN +++   
Sbjct: 229 LGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIACA 288

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
                     LFE M   GV  + ++++ +L ACSH GLVEKG+  F  M+   ++P   
Sbjct: 289 QHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHAGLVEKGEHCFGLMKEHGIEPGSQ 348

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYA +VDLLGRAG +E+AV +IK +P++P  ++WGALL  CRI+GN EL ++ A+ +F +
Sbjct: 349 HYATLVDLLGRAGKLEEAVLVIKEMPMQPTESVWGALLTGCRIHGNTELASFVADKVFEM 408

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
                G  +LLSN YA AG+W+EA++ R++M+ +  KK  G SWV+  + V  F   DR
Sbjct: 409 GAVSSGIQVLLSNAYAAAGRWEEAARARKMMRDQGIKKETGLSWVEEGNRVHTFAAGDR 467



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 134/266 (50%), Gaps = 4/266 (1%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           LR G ++H ++I+ G      + + L + Y+K    + +  +F+    +   +++ +I  
Sbjct: 23  LRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVISS 82

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           ++Q      +L  F  M   G+  D  +   A  + A L+++     +H ++++   H  
Sbjct: 83  FAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAHHHD 142

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE-AMR 251
           +FV +S++D Y + G ++LA K+FD +P K+  SW+ +I GY  +G  + A+NLF+ A+ 
Sbjct: 143 VFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALE 202

Query: 252 ED-GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
           +D  +  +  +  ++L  CS   L E GK+        S   +    + ++ L  + G++
Sbjct: 203 QDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVV 262

Query: 311 EDAVKLIKNLPVEPDANIWGALLGAC 336
           E   K+ + + V  +  +W A+L AC
Sbjct: 263 EGGYKVFEEVKVR-NLGMWNAMLIAC 287



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 47/259 (18%)

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           ++++G ++HG  I+        V + +++FY+++     + K+FD  P K + +W+++I 
Sbjct: 22  SLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVIS 81

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYD----PVSYIAIL-----------------TACSH 271
            +        A+  F  M   G+  D    P +  ++                  TA  H
Sbjct: 82  SFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAHHH 141

Query: 272 G--------------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317
                          G V   +K FDEM   +V    + ++ M+    + GL E+A+ L 
Sbjct: 142 DVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNV----VSWSGMIYGYSQMGLDEEALNLF 197

Query: 318 KNLPVEPDANI------WGALLGACRIYGNVELGAWAAEHLFMLK-PQHCGYYILLSNMY 370
           K   +E D +I        ++L  C      ELG       F       C     L ++Y
Sbjct: 198 KR-ALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLY 256

Query: 371 AEAGKWDEASKVRELMKSR 389
           ++ G  +   KV E +K R
Sbjct: 257 SKCGVVEGGYKVFEEVKVR 275


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 154/449 (34%), Positives = 241/449 (53%), Gaps = 36/449 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y ++ +   A  +F  +A  + VS+N M+  +A+    ++AL+ + EM      P+  T
Sbjct: 171 IYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFT 230

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
           +  +L  C R    + GK +HA I R+GL  + +L L NAL DMY KC  L +AQ++FN+
Sbjct: 231 MLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNV 290

Query: 119 SFR--------------------------------DEVSYNILIVGYSQTSDCSESLSLF 146
             R                                D VS+N +I GY+Q  DC     LF
Sbjct: 291 IVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLF 350

Query: 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
             M    +  D V+ +  +SA A + A+  G+ IHG  +R  +    F+ ++ +D Y + 
Sbjct: 351 ENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKC 410

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           G I  A  +F  +  KD   W T+I G+   G    A+ LF  M+E  V  + V+++A+L
Sbjct: 411 GSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQEY-VMPNQVTFVAVL 469

Query: 267 TACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD 325
           TACSH G V +G + F+ M+    ++P   HY C+VDLLGR+G   +   +I+ +P++P 
Sbjct: 470 TACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPS 529

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385
            +IWGA+L ACR YGN+E+   A + L  L+P+  G Y+LLSN+YA +G+W  + K+RE+
Sbjct: 530 RSIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEGGYVLLSNIYATSGRWKHSDKIREI 589

Query: 386 MKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           M+SR  KK  GCS V     + +FV  D+
Sbjct: 590 MESRGVKKTAGCSSVVVDGIIHEFVAADK 618



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 137/286 (47%), Gaps = 24/286 (8%)

Query: 16  HNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE------FPNSVTLTNVLPACA 69
           H+    N+  +N M++  +        L L +    +N       +PN  T   +L A  
Sbjct: 90  HHTPHPNLYIYNTMISALS--------LSLNQSFAFYNSLLSSCIYPNRSTFLFLLQA-- 139

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
              FL    +IH   I  G  +  +L N L  +Y +   + LA  VF  ++  D VS+NI
Sbjct: 140 -SKFLSQVMQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNI 198

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +I GY++     E+L    EM  LG+K D  + +G +  C  L   + GK +H    R+ 
Sbjct: 199 MIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRG 258

Query: 189 L--HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
           L   ++L + N++LD Y +   + +A  IF+ +  KD+ SWNT+I GY  +G ++ A N 
Sbjct: 259 LIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNF 318

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
           F    ED    D VS+ +I+   +  G     ++ F+ M A+++ P
Sbjct: 319 F----EDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWP 360



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 154/326 (47%), Gaps = 16/326 (4%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A   F ++  +++VSWN+++A +AQ    L   +L   M   N +P+ VT+
Sbjct: 306 YAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTI 365

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            N++ A A    L  G+ IH  ++R  +  D FL +A  DMY KCG +  A  VF  ++ 
Sbjct: 366 INLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTE 425

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D   +  +I G++     S++L LF EM+   M +  V+F+  ++AC++   + QG  I
Sbjct: 426 KDVTVWTTMITGFAFHGYGSKALQLFYEMQEYVMPNQ-VTFVAVLTACSHSGFVSQGLRI 484

Query: 181 -HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGMLG 238
            + +  R  +   +     ++D   RSGR      + + +P+K S S W  ++      G
Sbjct: 485 FNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYG 544

Query: 239 EVDTAINLFEAMREDGVGYDPVS---YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
            ++ A    E   ++ +  +P     Y+ +    +  G  +   K  + M++  VK T  
Sbjct: 545 NIEIA----EIAGKELLKLEPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAG 600

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLP 321
             + +VD     G++ + V   K  P
Sbjct: 601 CSSVVVD-----GIIHEFVAADKRHP 621


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 138/416 (33%), Positives = 236/416 (56%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +     +A  +FH++  ++++SW AM+   A    ++KA++L  +M      P   T
Sbjct: 576 MYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKST 635

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +++L  C     L  GK++ A I+  G   D  + NAL   Y+K G +  A+ VF+ + 
Sbjct: 636 FSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMP 695

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N +I GY+Q      ++    +M+   +  +  SF+  ++AC++ +A+++GK 
Sbjct: 696 SRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKR 755

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +++ L   + V  +++  Y + G    A ++FD +  K+  +WN +I  Y   G 
Sbjct: 756 VHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGL 815

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+  F  M ++G+  D  ++ +IL+AC+H GLV +G + F  M+++  V PT  HY 
Sbjct: 816 ASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYG 875

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+V LLGRA   ++A  LI  +P  PDA +W  LLGACRI+GN+ L   AA +   L  +
Sbjct: 876 CLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNAR 935

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +   YILLSN+YA AG+WD+ +K+R +M+ R  +K PG SW++  + + +F+  DR
Sbjct: 936 NPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADR 991



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 178/359 (49%), Gaps = 5/359 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+     +A  LF+ + +++++SWNA++A +A+     +A++L ++M      P  VT
Sbjct: 374 MYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT 433

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L ACA       GK IH  I+R G+  +  L NAL +MY +CG L  AQNVF    
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+N +I G++Q      +  LF EM+   ++ D ++F   +S C N  A++ GK+
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG      L   + + N++++ Y R G +  A  +F  L  +D  SW  +I G    GE
Sbjct: 554 IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              AI LF  M+ +G      ++ +IL  C+    +++GKK    +     +        
Sbjct: 614 DMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNA 673

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           ++    ++G M DA ++   +P   D   W  ++     Y    LG  A E  + ++ Q
Sbjct: 674 LISAYSKSGSMTDAREVFDKMPSR-DIVSWNKIIAG---YAQNGLGQTAVEFAYQMQEQ 728



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 167/336 (49%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  +  ++++SWN++++ +AQ   + KA QL  EM      PN +T
Sbjct: 71  MYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKIT 130

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             ++L AC     L  GK+IH++II+ G   D  + N+L  MY KCG L  A+ VF  IS
Sbjct: 131 YISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGIS 190

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VSYN ++  Y+Q +   E L LF +M   G+  D V+++  + A    + + +GK 
Sbjct: 191 PRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKR 250

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH +T+ + L++ + V  +++    R G +D A + F     +D   +N LI      G 
Sbjct: 251 IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGH 310

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A   +  MR DGV  +  +Y++IL ACS    +E GK     +  D           
Sbjct: 311 NVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNA 370

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++ +  R G +  A +L   +P + D   W A++  
Sbjct: 371 LISMYARCGDLPKARELFYTMP-KRDLISWNAIIAG 405



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 177/331 (53%), Gaps = 2/331 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A   F   A++++V +NA++A  AQ+   ++A +    M       N  T  ++L AC+ 
Sbjct: 283 AKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACST 342

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
              L  GK IH+ I   G + D+ + NAL  MYA+CG L  A+ +F  +  RD +S+N +
Sbjct: 343 SKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAI 402

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY++  D  E++ L+ +M+  G+K   V+F+  +SACAN +A   GK IH   +R  +
Sbjct: 403 IAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGI 462

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            ++  +AN++++ Y R G +  A  +F+    +D  SWN++I G+   G  +TA  LF+ 
Sbjct: 463 KSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQE 522

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M+ + +  D +++ ++L+ C +   +E GK+    +    ++        ++++  R G 
Sbjct: 523 MQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGS 582

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           ++DA  +  +L    D   W A++G C   G
Sbjct: 583 LQDARNVFHSLQ-HRDVMSWTAMIGGCADQG 612



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 142/286 (49%), Gaps = 3/286 (1%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   +L  C R   L   K IHA+++   +  D+FL+N L +MY KC  +  A  VF  +
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD +S+N LI  Y+Q     ++  LF EM+  G   + ++++  ++AC + A ++ GK
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH   I+        V NS+L  Y + G +  A ++F  +  +D  S+NT++  Y    
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
            V   + LF  M  +G+  D V+YI +L A +   ++++GK+       + +        
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGT 268

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG-NVE 343
            +V +  R G ++ A +  K    + D  ++ AL+ A   +G NVE
Sbjct: 269 ALVTMCVRCGDVDSAKQAFKG-TADRDVVVYNALIAALAQHGHNVE 313



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 4/228 (1%)

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           +++  +  C     + + K IH   +   +   +F++N +++ Y +   +  A+++F  +
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
           P +D  SWN+LI  Y   G    A  LFE M+  G   + ++YI+ILTAC     +E GK
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG--ACR 337
           K   ++     +        ++ + G+ G +  A ++   +    D   +  +LG  A +
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPR-DVVSYNTMLGLYAQK 207

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385
            Y    LG +       + P    Y  LL + +      DE  ++ +L
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLL-DAFTTPSMLDEGKRIHKL 254


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 144/448 (32%), Positives = 249/448 (55%), Gaps = 35/448 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPI-HNEFPNSV 59
           MY  S    +A  LF  +A++++VSW  ++  +A+  L  +A ++   M +  + +PN V
Sbjct: 175 MYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEV 234

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
           TL     A  +   L  G+ +H  I+  G    + L NAL DM+ KCGC+  A+ VF+  
Sbjct: 235 TLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGM 294

Query: 118 ------------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
                                         I  R+ VS++ ++  YS  +   E++ +F+
Sbjct: 295 PIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFN 354

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH-LHTHLFVANSILDFYTRS 206
           +M   G++    + +  +SACA L ++  G  ++   I  H +     ++N+ +D + + 
Sbjct: 355 DMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKC 414

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           G +  A+++F  +  K+  SWNT+I+ +G+ G+ + A++LF+  + +G+  D  +YI +L
Sbjct: 415 GDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVL 474

Query: 267 TACSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD 325
           +ACSHGGLV +G+ +F EM+    ++P   HYACM+DLLG+ GL+++A ++ +++PV  D
Sbjct: 475 SACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGAD 534

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385
              WGALL ACR++GNVE+G  AA+ L  L P   G Y+L+S +YA   KW +   +R +
Sbjct: 535 EAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTV 594

Query: 386 MKSREAKKNPGCSWVQTRDEVQDFVVND 413
           M+ R  KKNPGCS ++   +  +F+V D
Sbjct: 595 MRDRRVKKNPGCSSIEVDGKCHEFLVAD 622



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 112/222 (50%), Gaps = 7/222 (3%)

Query: 76  PGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGY 133
           P + IH    ++G +   +   NAL  MY     L  A+ +F+ ++ RD VS+  LI GY
Sbjct: 148 PTEAIHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGY 207

Query: 134 SQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           ++     E+  +F  M +   +  + V+ + A SA   +  +  G+ +H   +       
Sbjct: 208 ARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMS 267

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           + + N+++D + + G +  A ++FD +P+KD  SW +++  Y   G+++ A  LF+ +  
Sbjct: 268 VNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPN 327

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
             V    VS+  ++ A SH  + ++  + F++M A  V+P +
Sbjct: 328 RNV----VSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPID 365


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 148/425 (34%), Positives = 238/425 (56%), Gaps = 33/425 (7%)

Query: 23  IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82
           +V+WN M++ + + +   K+  L  EM      PNSVTL  +L AC++   L  GK I+ 
Sbjct: 173 VVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYK 232

Query: 83  RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN------------------------- 117
            I    +  +L L N L DM+A CG ++ AQ+VF+                         
Sbjct: 233 YINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDL 292

Query: 118 -------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170
                  I  RD VS+  +I GY + +   E+L+LF EM++  +K D  + +  ++ACA+
Sbjct: 293 ARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAH 352

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           L A++ G+ +     +  +    FV N+++D Y + G +  A K+F  +  KD  +W  +
Sbjct: 353 LGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAM 412

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-S 289
           I+G  + G  + A+ +F  M E  +  D ++YI +L AC+H G+VEKG+ +F  M     
Sbjct: 413 IVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHG 472

Query: 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAA 349
           +KP   HY CMVDLLGRAG +E+A ++I N+PV+P++ +WG+LLGACR++ NV+L   AA
Sbjct: 473 IKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAA 532

Query: 350 EHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
           + +  L+P++   Y+LL N+YA   +W+   +VR+LM  R  KK PGCS ++    V +F
Sbjct: 533 KQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEF 592

Query: 410 VVNDR 414
           V  D+
Sbjct: 593 VAGDQ 597



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 171/372 (45%), Gaps = 33/372 (8%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           +S +   A  +F  I +  +  WN M+  +++       + +   M   N  P+  T   
Sbjct: 53  ESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPF 112

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDE 123
           +L    R   L+ GK +    ++ G + +LF+  A   M++ C  ++LA+ VF++    E
Sbjct: 113 LLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWE 172

Query: 124 -VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH- 181
            V++NI++ GY++     +S  LF EM   G+  + V+ +  +SAC+ L  ++ GK I+ 
Sbjct: 173 VVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYK 232

Query: 182 ----GVTIR----KHLHTHLFVA----------------------NSILDFYTRSGRIDL 211
               G+  R    +++   +F A                       SI+  +   G+IDL
Sbjct: 233 YINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDL 292

Query: 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271
           A K FD +P +D  SW  +I GY  +     A+ LF  M+   V  D  + ++ILTAC+H
Sbjct: 293 ARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAH 352

Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
            G +E G+     +  +S+K        ++D+  + G +  A K+ K +    D   W A
Sbjct: 353 LGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMH-HKDKFTWTA 411

Query: 332 LLGACRIYGNVE 343
           ++    I G+ E
Sbjct: 412 MIVGLAINGHGE 423



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A   F  I E++ VSW AM+  + +    ++AL L REM + N  P+  T+ ++L ACA 
Sbjct: 293 ARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAH 352

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              L  G+ +   I +  +  D F+ NAL DMY KCG +  A+ VF  +  +D+ ++  +
Sbjct: 353 LGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAM 412

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH-GVTIRKH 188
           IVG +      E+L++FS M    +  D ++++G + AC +   +++G+     +T++  
Sbjct: 413 IVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHG 472

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
           +  ++     ++D   R+GR++ A+++   +PVK +S  W +L+
Sbjct: 473 IKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLL 516



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 126/271 (46%), Gaps = 4/271 (1%)

Query: 78  KEIHARIIRKGLNFD-LFLTNALTDMYA-KCGCLNLAQNVFN-ISFRDEVSYNILIVGYS 134
           K+IH+  I+ GL+ D LF    +    A + G +  A+ VF+ I       +N +I GYS
Sbjct: 24  KQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYS 83

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
           + +     +S++  M    +K D  +F   +       A++ GK +    ++    ++LF
Sbjct: 84  RINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLF 143

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           V  + +  ++    +DLA K+FD     +  +WN ++ GY  + +   +  LF  M + G
Sbjct: 144 VQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRG 203

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
           V  + V+ + +L+ACS    +E GK  +  +    V+   +    ++D+    G M++A 
Sbjct: 204 VSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQ 263

Query: 315 KLIKNLPVEPDANIWGALLGACRIYGNVELG 345
            +  N+    D   W +++      G ++L 
Sbjct: 264 SVFDNMK-NRDVISWTSIVTGFANIGQIDLA 293



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 1/116 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  +  K+  +W AM+   A N    +AL +   M   +  P+ +T
Sbjct: 384 MYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEIT 443

Query: 61  LTNVLPACARGHFLRPGKEIHARI-IRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
              VL AC     +  G+     + ++ G+  ++     + D+  + G L  A  V
Sbjct: 444 YIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEV 499


>gi|297746037|emb|CBI16093.3| unnamed protein product [Vitis vinifera]
          Length = 702

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 163/457 (35%), Positives = 241/457 (52%), Gaps = 70/457 (15%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN---RLELKALQLVREMPIH-NEF- 55
           +Y+K     EA  +F N+ ++NI+SW A +  F Q+   +  LK   ++RE  I  NEF 
Sbjct: 258 LYSKCGMMEEAEIVFENLGQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFT 317

Query: 56  --------------------------------------------------PNSVTLTNVL 65
                                                             PN   L ++L
Sbjct: 318 FSIVLASCGCDLGKWMKQRTSSNRWGGQHLMSIFLLRKMIEEGNKPTSLRPNQFVLPSIL 377

Query: 66  PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS 125
            AC      R G+ +H  I++     D ++ +AL  MY+KCG +  A  VF+    + VS
Sbjct: 378 KACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDW-IPNVVS 436

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           +N LI G+SQ  D              G     V+    + AC N+A ++ GKEIHG  +
Sbjct: 437 WNTLIAGFSQMLD-------------QGFCPSSVTISSLLPACTNVANLRHGKEIHGYAM 483

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
              +   ++V ++++D Y + G I  A  +F  +P +++ +WN+LI GY   G  + AI 
Sbjct: 484 VIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIE 543

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLL 304
           LF  M E     D +++ A+L ACSH G+VE G+  F +MQ    ++P   HYACMVDLL
Sbjct: 544 LFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLL 603

Query: 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364
           GRAG + +A  LIK +PVEPD  +WGALLGACR +GN+EL   AAEHLF L+P+  G  +
Sbjct: 604 GRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSL 663

Query: 365 LLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQ 401
           LLSN+YA+AG+W  A+K++++MK R+  K PGCSW++
Sbjct: 664 LLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 700



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 114/216 (52%), Gaps = 1/216 (0%)

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
           FP+   + + L  C R   +  G+  H  +++ GL  D F+  +L DMYAKCG ++ A  
Sbjct: 110 FPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVR 169

Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           V++ ++  D  + N LI  Y++     ++  +F ++  +G + +  ++   ++ C  ++A
Sbjct: 170 VYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISA 229

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           I++GK++H   ++    +   V N++L  Y++ G ++ A  +F+ L  ++  SW   I G
Sbjct: 230 IQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASING 289

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           +   G+   A+  F  MRE G+  +  ++  +L +C
Sbjct: 290 FYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASC 325



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 166/389 (42%), Gaps = 72/389 (18%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  ++  +   +  + N +++ +A+N   ++A Q+  ++      PN  T
Sbjct: 157 MYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYT 216

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            + +L  C     ++ GK++HA +++     +  + NAL  +Y+KCG +  A+ VF N+ 
Sbjct: 217 YSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFENLG 276

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA-NLAA-IKQ- 176
            R+ +S+   I G+ Q  D  ++L  FS MR  G++ +  +F   +++C  +L   +KQ 
Sbjct: 277 QRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCDLGKWMKQR 336

Query: 177 -------GKEIHGV-TIRK---------HLHTHLFVANSILD------------------ 201
                  G+ +  +  +RK          L  + FV  SIL                   
Sbjct: 337 TSSNRWGGQHLMSIFLLRKMIEEGNKPTSLRPNQFVLPSILKACGHLSDRRTGENMHTVI 396

Query: 202 -----------------FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
                             Y++ G ++ A ++FD +P  +  SWNTLI G           
Sbjct: 397 LKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIP--NVVSWNTLIAG----------- 443

Query: 245 NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLL 304
             F  M + G     V+  ++L AC++   +  GK+         V+      + +VD+ 
Sbjct: 444 --FSQMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMY 501

Query: 305 GRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            + G + +A  L   +P E +   W +L+
Sbjct: 502 AKCGYISEAKILFYMMP-ERNTVTWNSLI 529



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 18/233 (7%)

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G  H    F  A+S C     ++ G+  H   ++  L +  FV  S++D Y + G +D A
Sbjct: 109 GFPHRQYVF-SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSA 167

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
            +++D +   D+A+ N LI  Y   G    A  +F  +   G   +  +Y  +L  C   
Sbjct: 168 VRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTI 227

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYA-------CMVDLLGRAGLMEDAVKLIKNLPVEPD 325
             +++GK    ++ A  VK   M Y         ++ L  + G+ME+A  + +NL  + +
Sbjct: 228 SAIQEGK----QLHAHVVK---MQYLSETAVGNALLTLYSKCGMMEEAEIVFENLG-QRN 279

Query: 326 ANIWGALLGACRIYGNVE--LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376
              W A +     +G+ +  L  ++      ++P    + I+L++   + GKW
Sbjct: 280 IISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCDLGKW 332


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 143/406 (35%), Positives = 235/406 (57%), Gaps = 2/406 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  ++E+NI +WNAM+A   Q     +AL L +EM      P+  TL +VL  CA 
Sbjct: 147 AQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAG 206

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
              L  G+E+HA +++ G      + ++L  MY K G L+  + +  ++  R  V++N L
Sbjct: 207 LRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTL 266

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I G +Q     E L+ ++ M++ G + D ++F+  +SAC+ LA + QG++IH   I+   
Sbjct: 267 IAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGA 326

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            + L V +S++  Y+RSG ++ + K F      D   W+++I  YG  G  + A+ LF  
Sbjct: 327 SSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQ 386

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAG 308
           M +  +  + V+++++L ACSH GL EKG +YFD M +   +KP   HY C+VDLLGRAG
Sbjct: 387 MEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAG 446

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
            +E+A  +I+++PV+PD  IW  LL AC+++   E+    +E +  L P     Y+LLSN
Sbjct: 447 RLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSN 506

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           ++A A  W   S++R+ M+ R  +K PG SW++ ++ V  F + D+
Sbjct: 507 IHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDK 552



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 145/315 (46%), Gaps = 33/315 (10%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            +++L +C +   L  GK++H+ II  G + D F++N L + Y+K G    +  +F N+ 
Sbjct: 65  FSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMP 124

Query: 120 FRDEVSYNILIVGYSQTSDCS-------------------------------ESLSLFSE 148
            R+ +S+NILI GY Q  D                                 ++LSLF E
Sbjct: 125 RRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKE 184

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M  LG   D  +    +  CA L ++  G+E+H   ++        V +S+   Y +SG 
Sbjct: 185 MYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGS 244

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +    K+   +P++   +WNTLI G    G  +  +N +  M+  G   D ++++++L+A
Sbjct: 245 LSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSA 304

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           CS    + +G++   E+            + ++ +  R+G +ED++K   +     D  +
Sbjct: 305 CSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRE-NFDVVL 363

Query: 329 WGALLGACRIYGNVE 343
           W +++ A   +G  E
Sbjct: 364 WSSMIAAYGFHGRGE 378



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 132/263 (50%), Gaps = 7/263 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY KS   ++   L  ++  + +V+WN ++A  AQN    + L     M +    P+ +T
Sbjct: 238 MYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKIT 297

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +VL AC+    L  G++IHA +I+ G +  L + ++L  MY++ GCL  +   F +  
Sbjct: 298 FVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRE 357

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V ++ +I  Y       E+L LF +M  L M+ + V+F+  + AC++    ++G E
Sbjct: 358 NFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTE 417

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGML 237
              + ++K+ L   +     ++D   R+GR++ A  +   +PV+ D   W TL+    + 
Sbjct: 418 YFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLH 477

Query: 238 GEVDTAINLFEAMREDGVGYDPV 260
            E + A    E + E+ +  DP+
Sbjct: 478 KEAEMA----ERISEEIIKLDPL 496


>gi|357129081|ref|XP_003566196.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 505

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 152/422 (36%), Positives = 236/422 (55%), Gaps = 12/422 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP-----IHNEFP 56
           YAKS+    A  +F     ++IV WN M++ ++   L   +  L   M        + F 
Sbjct: 50  YAKSALVKHARRVFDETPRRDIVLWNVMLSCYSSQGLLHHSWALFTSMQRTSGLSGDGFT 109

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
            S  L+   P+ A    L  G   H  ++R GL+ DL +  AL DMYAK G +  A+ VF
Sbjct: 110 FSALLSARAPSSACSQHL--GLLAHGLVLRLGLHLDLVVATALLDMYAKSGRVTDARQVF 167

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL----LGMKHDVVSFMGAISACANL 171
           + +  R  VS+N +IV Y   +  SE+L +F  M         + D ++    +S+CAN+
Sbjct: 168 DAMLLRSTVSWNAIIVCYGHHAGGSEALQIFVSMLRNDDGCCCQPDELTLASLLSSCANM 227

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
           AA  +  +IH   +++ L   L VAN+++  Y ++G +  A + F  L   D  SW++++
Sbjct: 228 AAAYEATQIHAYALKRGLQGFLQVANALVMAYGKNGFLQQATQTFATLHNPDIVSWSSMV 287

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
             +  LG   +AI++FE M + GV  D ++++ +L+ACSH GL+E G KYF  M    + 
Sbjct: 288 SSFAYLGRAKSAIHVFERMIQQGVRLDGIAFLGVLSACSHAGLIEDGLKYFLMMMDYKID 347

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
           P   H+ C+VDLLGRAG+++DA  ++ N+  + + ++ GA LGAC+  GN+EL  WAA+ 
Sbjct: 348 PCPQHFVCLVDLLGRAGMVQDAYDVLINISCQTNIDVIGAFLGACKTRGNIELAKWAADR 407

Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
           L  L+P     Y+L+SN YA  G W E +KVR LM++   KK PGCSW++   +VQ FV 
Sbjct: 408 LLHLEPNEPVNYLLISNAYAATGAWSELAKVRSLMRNMCGKKVPGCSWIEIAGKVQTFVS 467

Query: 412 ND 413
           ND
Sbjct: 468 ND 469



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 141/299 (47%), Gaps = 22/299 (7%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
             L ACAR         IH  +I+ G   D  L  ALTD YAK   +  A+ VF+    R
Sbjct: 19  TALHACAR---------IHPLLIKSGHASDARLATALTDAYAKSALVKHARRVFDETPRR 69

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQ--GK 178
           D V +N+++  YS       S +LF+ M R  G+  D  +F   +SA A  +A  Q  G 
Sbjct: 70  DIVLWNVMLSCYSSQGLLHHSWALFTSMQRTSGLSGDGFTFSALLSARAPSSACSQHLGL 129

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
             HG+ +R  LH  L VA ++LD Y +SGR+  A ++FD + ++ + SWN +I+ YG   
Sbjct: 130 LAHGLVLRLGLHLDLVVATALLDMYAKSGRVTDARQVFDAMLLRSTVSWNAIIVCYGHHA 189

Query: 239 EVDTAINLFEAM--REDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
               A+ +F +M   +DG    P  ++  ++L++C++     +  +         ++   
Sbjct: 190 GGSEALQIFVSMLRNDDGCCCQPDELTLASLLSSCANMAAAYEATQIHAYALKRGLQGFL 249

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
                +V   G+ G ++ A +    L   PD   W +++ +    G  +    +A H+F
Sbjct: 250 QVANALVMAYGKNGFLQQATQTFATLH-NPDIVSWSSMVSSFAYLGRAK----SAIHVF 303



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 95/182 (52%), Gaps = 5/182 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF----P 56
           MYAKS R  +A  +F  +  ++ VSWNA++  +  +    +ALQ+   M  +++     P
Sbjct: 153 MYAKSGRVTDARQVFDAMLLRSTVSWNAIIVCYGHHAGGSEALQIFVSMLRNDDGCCCQP 212

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           + +TL ++L +CA         +IHA  +++GL   L + NAL   Y K G L  A   F
Sbjct: 213 DELTLASLLSSCANMAAAYEATQIHAYALKRGLQGFLQVANALVMAYGKNGFLQQATQTF 272

Query: 117 -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
             +   D VS++ ++  ++       ++ +F  M   G++ D ++F+G +SAC++   I+
Sbjct: 273 ATLHNPDIVSWSSMVSSFAYLGRAKSAIHVFERMIQQGVRLDGIAFLGVLSACSHAGLIE 332

Query: 176 QG 177
            G
Sbjct: 333 DG 334



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 14/173 (8%)

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
           A   A+     IH + I+    +   +A ++ D Y +S  +  A ++FD  P +D   WN
Sbjct: 16  AGATALHACARIHPLLIKSGHASDARLATALTDAYAKSALVKHARRVFDETPRRDIVLWN 75

Query: 229 TLILGYGMLGEVDTAINLFEAM-REDGVGYDPVSYIAIL------TACS-HGGLVEKGKK 280
            ++  Y   G +  +  LF +M R  G+  D  ++ A+L      +ACS H GL+  G  
Sbjct: 76  VMLSCYSSQGLLHHSWALFTSMQRTSGLSGDGFTFSALLSARAPSSACSQHLGLLAHGLV 135

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
               +  D V  T      ++D+  ++G + DA ++   + +    + W A++
Sbjct: 136 LRLGLHLDLVVATA-----LLDMYAKSGRVTDARQVFDAMLLRSTVS-WNAII 182


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 145/415 (34%), Positives = 240/415 (57%), Gaps = 7/415 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K +   +A  LF  + ++N++SW  M++ +++ ++  KAL+L+  M   N  PN  T
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++VL +C   + +   + +H  II++GL  D+F+ +AL D++AK G    A +VF+ + 
Sbjct: 165 YSSVLRSC---NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMV 221

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D + +N +I G++Q S    +L LF  M+  G   +  +    + AC  LA ++ G +
Sbjct: 222 TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQ 281

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H V I K+    L + N+++D Y + G ++ A ++F+ +  +D  +W+T+I G    G 
Sbjct: 282 AH-VHIVKY-DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGY 339

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYA 298
              A+ LFE M+  G   + ++ + +L ACSH GL+E G  YF  M+    + P   HY 
Sbjct: 340 SQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYG 399

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLG+AG ++DAVKL+  +  EPDA  W  LLGACR+  N+ L  +AA+ +  L P+
Sbjct: 400 CMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPE 459

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             G Y LLSN+YA + KWD   ++R  M+ R  KK PGCSW++   ++  F++ D
Sbjct: 460 DAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGD 514



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 144/300 (48%), Gaps = 15/300 (5%)

Query: 41  KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100
           +A++ +  +  H  + +S T + ++  C     +  G  I   +   G    +FL N L 
Sbjct: 44  RAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLI 103

Query: 101 DMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
           +MY K   LN A  +F+ +  R+ +S+  +I  YS+     ++L L   M    ++ +V 
Sbjct: 104 NMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVY 163

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           ++   + +C  ++ ++    +H   I++ L + +FV ++++D + + G  + A  +FD +
Sbjct: 164 TYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEM 220

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
              D+  WN++I G+      D A+ LF+ M+  G   +  +  ++L AC+   L+E G 
Sbjct: 221 VTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG- 279

Query: 280 KYFDEMQADS--VKPTE--MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                MQA    VK  +  +    +VD+  + G +EDA+++   +  E D   W  ++  
Sbjct: 280 -----MQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 98/211 (46%), Gaps = 30/211 (14%)

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH----- 192
           D   ++     ++  G+  D  ++   I  C +  A+ +G       I +HL+ +     
Sbjct: 41  DLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGN-----LICRHLYFNGHRPM 95

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +F+ N +++ Y +   ++ A+++FD +P ++  SW T+I  Y        A+ L   M  
Sbjct: 96  MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR 155

Query: 253 DGVGYDPVSYIAILTACS--------HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLL 304
           D V  +  +Y ++L +C+        H G++++G      +++D    +      ++D+ 
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEG------LESDVFVRS-----ALIDVF 204

Query: 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            + G  EDA+ +   + V  DA +W +++G 
Sbjct: 205 AKLGEPEDALSVFDEM-VTGDAIVWNSIIGG 234


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 145/415 (34%), Positives = 240/415 (57%), Gaps = 7/415 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K +   +A  LF  + ++N++SW  M++ +++ ++  KAL+L+  M   N  PN  T
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            ++VL +C   + +   + +H  II++GL  D+F+ +AL D++AK G    A +VF+ + 
Sbjct: 165 YSSVLRSC---NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMV 221

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D + +N +I G++Q S    +L LF  M+  G   +  +    + AC  LA ++ G +
Sbjct: 222 TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQ 281

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H V I K+    L + N+++D Y + G ++ A ++F+ +  +D  +W+T+I G    G 
Sbjct: 282 AH-VHIVKY-DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGY 339

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYA 298
              A+ LFE M+  G   + ++ + +L ACSH GL+E G  YF  M+    + P   HY 
Sbjct: 340 SQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYG 399

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLG+AG ++DAVKL+  +  EPDA  W  LLGACR+  N+ L  +AA+ +  L P+
Sbjct: 400 CMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPE 459

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             G Y LLSN+YA + KWD   ++R  M+ R  KK PGCSW++   ++  F++ D
Sbjct: 460 DAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGD 514



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 144/300 (48%), Gaps = 15/300 (5%)

Query: 41  KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100
           +A++ +  +  H  + +S T + ++  C     +  G  I   +   G    +FL N L 
Sbjct: 44  RAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLI 103

Query: 101 DMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
           +MY K   LN A  +F+ +  R+ +S+  +I  YS+     ++L L   M    ++ +V 
Sbjct: 104 NMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVY 163

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           ++   + +C  ++ ++    +H   I++ L + +FV ++++D + + G  + A  +FD +
Sbjct: 164 TYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEM 220

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
              D+  WN++I G+      D A+ LF+ M+  G   +  +  ++L AC+   L+E G 
Sbjct: 221 VTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG- 279

Query: 280 KYFDEMQADS--VKPTE--MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                MQA    VK  +  +    +VD+  + G +EDA+++   +  E D   W  ++  
Sbjct: 280 -----MQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 98/211 (46%), Gaps = 30/211 (14%)

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH----- 192
           D   ++     ++  G+  D  ++   I  C +  A+ +G       I +HL+ +     
Sbjct: 41  DLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGN-----LICRHLYFNGHRPM 95

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +F+ N +++ Y +   ++ A+++FD +P ++  SW T+I  Y        A+ L   M  
Sbjct: 96  MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR 155

Query: 253 DGVGYDPVSYIAILTACS--------HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLL 304
           D V  +  +Y ++L +C+        H G++++G      +++D    +      ++D+ 
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEG------LESDVFVRS-----ALIDVF 204

Query: 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            + G  EDA+ +   + V  DA +W +++G 
Sbjct: 205 AKLGEPEDALSVFDEM-VTGDAIVWNSIIGG 234


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 145/446 (32%), Positives = 243/446 (54%), Gaps = 34/446 (7%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
           AK    ++A  L      ++++SW +++A +++     +A+   + M      P+ VT+ 
Sbjct: 185 AKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVI 244

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN----- 117
            VL AC++   L  G  +H+ +  KG++    L  AL DMYAKCG    A+ VF+     
Sbjct: 245 GVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRG 304

Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                       +  RD +++N +I GY  +    E+L LF  M
Sbjct: 305 RRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNM 364

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
           R   ++ D  + +  +SACA+L A+ QG+ +H     + + T +++  ++LD Y + GR+
Sbjct: 365 RRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRV 424

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           + A  +F  +  +D  +W  +I G    G     +  F  MR DG   +PVSYIA+LTAC
Sbjct: 425 NEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTAC 484

Query: 270 SHGGLVEKGKKYFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           SH  L+ +G+ YFDEM+   ++ P   HY CM+DLLGR+GL+++A+ L+K +P++P++ I
Sbjct: 485 SHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVI 544

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
           W ++L ACR++  ++L   AAEHL  ++P     Y+ L N+  ++ KW++ASK+R LM+ 
Sbjct: 545 WASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEE 604

Query: 389 REAKKNPGCSWVQTRDEVQDFVVNDR 414
           R+ KK  G S V    +V  FVV+D+
Sbjct: 605 RQVKKTAGYSSVTVAGQVHKFVVSDK 630



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 193/386 (50%), Gaps = 7/386 (1%)

Query: 15   FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL 74
             ++I  ++++SWN++++ +A      +A+  +++M  H + P+  +  ++L    +    
Sbjct: 954  LNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDW 1013

Query: 75   RPGKEIHARIIRKGLNFD-LFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
            + G +IH  + + G +   + +   L DMY KC C + +  +FN I        N LI  
Sbjct: 1014 QLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITS 1073

Query: 133  YSQTSDCSESLSLFSEMRLLGMKHDVVSF---MGAISACANLAAIKQGKEIHGVTIRKHL 189
              + +    +L +   M + G+  D V+F   M AIS  A+  ++   + +H   ++   
Sbjct: 1074 SLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSAS-PSLTSCQMLHSCLVKLGF 1132

Query: 190  HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
               + V +S++  Y  +G++  ++ IF+ L   +   +  +I      G+   A+ LF+ 
Sbjct: 1133 EMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQ 1192

Query: 250  MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAG 308
            M   G+  D V+++  +  C   G+ E+G+   + M+A   + P E H+ACMV+LL R G
Sbjct: 1193 MVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDG 1252

Query: 309  LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
             +++A+++++  P+      W +LL +C+ +G   LG  AA  L  +  +     + +SN
Sbjct: 1253 FVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSN 1312

Query: 369  MYAEAGKWDEASKVRELMKSREAKKN 394
             + + G  + A +++E+   +E KK+
Sbjct: 1313 FFNDIGDRETALRIKEMTNVKEVKKS 1338



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 178/413 (43%), Gaps = 41/413 (9%)

Query: 2    YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
            Y     P  +  LF  +  +N    N ++      +L  + +    +M       N ++ 
Sbjct: 838  YMHVESPHASLSLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSY 897

Query: 62   TNVLPACAR-GHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCG-CLNLAQNVFNI 118
               +  C + G +L  G+++H  +++ G +  ++FL+N+L D+Y+  G  ++  + + +I
Sbjct: 898  CYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDI 957

Query: 119  SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
               D +S+N ++  Y+      E++    +M   G    + SF+  ++        + G 
Sbjct: 958  LSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGV 1017

Query: 179  EIHGVTIRKHLH-THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            +IHG+  +     + + V  +++D Y +    D +  IF+ +P       N+LI      
Sbjct: 1018 QIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLRC 1077

Query: 238  GEVDTAINLFEAMREDGVGYDPVSYIAI-----------LTACS--HGGLVEKGKKYFDE 284
               D A+ +   M  +GV  D V++ A            LT+C   H  LV+ G     E
Sbjct: 1078 NMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGF----E 1133

Query: 285  MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344
            M           YAC       AG +  +  + + L ++P+   + A++ AC  YG+   
Sbjct: 1134 MDMAVCSSLITAYAC-------AGQLSSSHLIFEGL-LDPNVICFTAIISACARYGD--- 1182

Query: 345  GAWAAEHLF------MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK-SRE 390
            GA A E LF       LKP +  +   ++    +AG ++E   V ELM+ SRE
Sbjct: 1183 GARAME-LFDQMVSSGLKPDNVTFLCAIAGC-DQAGMFEEGRLVIELMRASRE 1233



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 34/199 (17%)

Query: 180 IHGVTIRKHLHTHL-FVANSILDFYTRSGRIDLANKIFDCLPVKDSA------------- 225
           +H   +R  L +   FVANS++  YT  G      + FD +PVKD+              
Sbjct: 129 LHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMG 188

Query: 226 ------------------SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
                             SW +LI  Y        A++ F+ M  +G+  D V+ I +L+
Sbjct: 189 MLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLS 248

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           ACS    +E G      ++   +  +E     ++D+  + G    A ++   +       
Sbjct: 249 ACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQ 308

Query: 328 IWGALL-GACRIYGNVELG 345
            W A++ G C+ +G+V++ 
Sbjct: 309 SWNAIIDGYCK-HGHVDVA 326



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 126/296 (42%), Gaps = 12/296 (4%)

Query: 117  NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
             ++ RD  S N +I G+ +      + +++  M   G++    +F   +  C+   A+  
Sbjct: 756  TMAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEAL-- 813

Query: 177  GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
              ++HG  +   L  + FV +++++ Y        +  +F  LP++++A  N ++ G G 
Sbjct: 814  --QLHGRVLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGN 871

Query: 237  LGEVDTAINLFEAMREDGVGYDPVSYIAILTAC-SHGGLVEKGKKYFDEMQADSVKPTEM 295
            L   +  I  F  MR   +  + +SY   +  C  +G  +E+G++    +      P+ +
Sbjct: 872  LKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNI 931

Query: 296  HYA-CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV-ELGAWAAEHLF 353
              +  +VDL    G   D VK + ++  E D   W ++L      G++ E   +  + L+
Sbjct: 932  FLSNSLVDLYSAIGDSVDTVKALNDILSE-DVISWNSILSMYADRGHMKEAVYYLKQMLW 990

Query: 354  MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
              K      ++ L  +  + G W    ++  ++     K    CS V  +  + D 
Sbjct: 991  HGKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVH----KLGFSCSSVHVQTTLIDM 1042



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 10/111 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  R  EA+ +F  + ++++ +W AM+A  A N +    L+   +M      PN V+
Sbjct: 417 MYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVS 476

Query: 61  LTNVLPACARGHFLRPGK----------EIHARIIRKGLNFDLFLTNALTD 101
              VL AC+    L  G+           IH +I   G   DL   + L D
Sbjct: 477 YIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLD 527


>gi|356574078|ref|XP_003555179.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g56570-like [Glycine max]
          Length = 598

 Score =  277 bits (708), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 144/417 (34%), Positives = 238/417 (57%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAE-ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MYA      + A  +F +I  K  V W  ++  +         L++ R+M +     +  
Sbjct: 156 MYATCCDSMDRARMVFDDITTKTDVCWTTLITGYTHRGDAYGGLRVFRQMFLEEGALSLF 215

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI- 118
           + +    ACA       GK++HA +++ G   +L + N++ DMY KC C + A+ +F++ 
Sbjct: 216 SFSIAARACASIGSGILGKQVHAEVVKHGFESNLPVMNSILDMYCKCHCESEAKRLFSVM 275

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + +D +++N LI G+ +  D  ESL +FS M   G+  D  SF  A+ ACANLA +  G+
Sbjct: 276 THKDTITWNTLIAGF-EALDSRESLCIFSRMVSEGLXPDCFSFTSAVGACANLAVLYCGQ 334

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++HGV +R  L  +L ++N+++  Y + G I  + KIF  +P  +  SW ++I GYG  G
Sbjct: 335 QLHGVIVRSGLDNYLEISNALIYMYAKCGNIADSRKIFSKMPCTNLVSWTSMINGYGDHG 394

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHY 297
               A+ LF  M   G+  D + ++A+L+ACSH GLV++G +YF  M +  ++ P    Y
Sbjct: 395 YGKDAVELFNEMIRSGIKPDKMVFMAVLSACSHAGLVDEGLRYFRLMTSYYNITPDIEIY 454

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C+VDL GRAG +++A +LI+N+P  PD +IW ALLGAC+++    +  +AA     +KP
Sbjct: 455 GCVVDLFGRAGRVKEAYQLIENMPFNPDESIWAALLGACKVHNQPSVAKFAALRALDMKP 514

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
              G Y L+SN+YA  G WD+ +   +L +  + K + G SW++ +D++  FVV DR
Sbjct: 515 ISAGTYALISNIYAAEGNWDDFASSTKLRRGIKNKSDSGRSWIELKDQICSFVVGDR 571



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 88/217 (40%), Gaps = 20/217 (9%)

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ V++  +I   +  ++   + S+F +M   G+K                 A+  G+ +
Sbjct: 91  RNVVTWTAMITSNNSRNNHMRAWSVFPQMLRDGVK-----------------ALSCGQLV 133

Query: 181 HGVTIRKHLH-THLFVANSILDFY-TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           H + I+  +  + ++V NS++D Y T    +D A  +FD +  K    W TLI GY   G
Sbjct: 134 HSLAIKIGVQGSSVYVDNSLMDMYATCCDSMDRARMVFDDITTKTDVCWTTLITGYTHRG 193

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
           +    + +F  M  +       S+     AC+  G    GK+   E+     +       
Sbjct: 194 DAYGGLRVFRQMFLEEGALSLFSFSIAARACASIGSGILGKQVHAEVVKHGFESNLPVMN 253

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            ++D+  +     +A +L  ++    D   W  L+  
Sbjct: 254 SILDMYCKCHCESEAKRLF-SVMTHKDTITWNTLIAG 289


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  277 bits (708), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 145/418 (34%), Positives = 232/418 (55%), Gaps = 7/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  +  +++++WN M++ +A+     +AL+L + M  ++  PN VT
Sbjct: 207 MYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVT 266

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC-LNLAQNVFN-I 118
              +L AC     L  G+ IH ++   G   DL + N L +MY KC   L  A+ VF  +
Sbjct: 267 FIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERM 326

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD +++NILIV Y Q     ++L +F +M+L  +  + ++    +SACA L A +QGK
Sbjct: 327 RTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGK 386

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H +         + + NS+++ Y R G +D    +F  +  K   SW+TLI  Y   G
Sbjct: 387 AVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHG 446

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
              T +  F  + ++G+  D V+ ++ L+ACSHGG++++G + F  M  D  + P   H+
Sbjct: 447 HSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHF 506

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLL RAG +E A  LI ++P  PDA  W +LL  C+++ + +  A  A+ LF L+ 
Sbjct: 507 LCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELES 566

Query: 358 Q-HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +       LLSN+YAEAG+WD+  K R     R A+KNPGCS+++  D V +FV  D+
Sbjct: 567 EDEHSTVTLLSNVYAEAGRWDDVRKTR---NRRAARKNPGCSYIEINDTVHEFVAGDK 621



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 181/349 (51%), Gaps = 7/349 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    A+A  +FH I   N VSW  +VA FA+N    +AL   R M +    P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
               +  C+    L+ G+ +HA I+  + L FD+ L  AL  MYA+C  L LA+  F+ +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEM---RLLGMKHDVVSFMGAISACANLAAIK 175
             +  V++N LI GYS+  D   +L ++ +M      GMK D ++F  A+ AC  +  I 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           QG+EI   T+     +   V N++++ Y++ G ++ A K+FD L  +D  +WNT+I GY 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G    A+ LF+ M  +    + V++I +LTAC++   +E+G+    +++ D  +   +
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLV 300

Query: 296 HYACMVDLLGR-AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
               ++++  + +  +E+A ++ + +    D   W  L+ A   YG  +
Sbjct: 301 IGNVLLNMYTKCSSSLEEARQVFERMRTR-DVITWNILIVAYVQYGQAK 348


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  277 bits (708), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 145/418 (34%), Positives = 251/418 (60%), Gaps = 6/418 (1%)

Query: 2   YAKSSRPAEASYLFHNIAE-KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y K+    +A  +F+ +   ++ VSWN+M+  + Q++   KAL L +EM       +  T
Sbjct: 183 YGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFT 242

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC-LNLAQNVFN-I 118
           L +VL A      L  G + H ++I+ G + +  + + L D+Y+KCG  ++  + VF  I
Sbjct: 243 LASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEI 302

Query: 119 SFRDEVSYNILIVGYSQTSD-CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  D V +N ++ GYSQ  +   ++L  F +M+ +G + +  SF+  ISAC+NL++  QG
Sbjct: 303 TEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQG 362

Query: 178 KEIHGVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           K+IH + ++  + ++ + V N+++  Y++ G +  A ++FD +   ++ S N++I GY  
Sbjct: 363 KQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQ 422

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G    +++LF+ M E  +    +++I++L+AC+H G VE+G  YF+ M+   +++P   
Sbjct: 423 HGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAE 482

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY+CM+DLLGRAG + +A  LI  +P  P +  W +LLGACR +GN+EL   AA  +  L
Sbjct: 483 HYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQL 542

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +P +   Y++LSNMYA AG+W+E + VR+ M+ R  KK PGCSW++ +  +  FV  D
Sbjct: 543 EPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAED 600



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 159/326 (48%), Gaps = 11/326 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK SRP  A  LF  I E ++VS+N +++ +A       AL L   M       +  TL
Sbjct: 84  YAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTL 143

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--IS 119
           + V+ AC     L    ++H+  +  G +  + + NAL   Y K G L+ A+ VF     
Sbjct: 144 SAVITACCDDVGLI--GQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGG 201

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RDEVS+N +IV Y Q  + S++L LF EM   G+  D+ +    ++A   L  +  G +
Sbjct: 202 IRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQ 261

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTR-SGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            HG  I+   H +  V + ++D Y++  G +    K+F+ +   D   WNT++ GY    
Sbjct: 262 FHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNE 321

Query: 239 E-VDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
           E ++ A+  F  M+  G+GY P   S++ +++ACS+     +GK+         +    +
Sbjct: 322 EFLEDALECFRQMQ--GIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRI 379

Query: 296 HYA-CMVDLLGRAGLMEDAVKLIKNL 320
                ++ +  + G ++DA +L   +
Sbjct: 380 SVDNALIAMYSKCGNLQDARRLFDRM 405



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 137/305 (44%), Gaps = 37/305 (12%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN----- 117
           ++L  C     L  GK +H+  I+  +    + +N    +Y+KCG L  A+  F      
Sbjct: 13  HLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 118 --ISFR-------------------------DEVSYNILIVGYSQTSDCSESLSLFSEMR 150
              SF                          D VSYN LI  Y+   + + +L LFS MR
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 151 LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210
            +G+  D  +    I+AC +   +    ++H V +     +++ V N++L +Y ++G +D
Sbjct: 133 EMGLDMDGFTLSAVITACCDDVGLI--GQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 211 LANKIFDCL-PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
            A ++F  +  ++D  SWN++I+ YG   E   A+ LF+ M   G+  D  +  ++LTA 
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250

Query: 270 SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR-AGLMEDAVKLIKNLPVEPDANI 328
           +    +  G ++  ++            + ++DL  +  G M D  K+ + +  EPD  +
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEI-TEPDLVL 309

Query: 329 WGALL 333
           W  ++
Sbjct: 310 WNTMV 314



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 7/158 (4%)

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
           ++F  N+I+  Y +  R  +A+++FD +P  D  S+NTLI  Y   GE   A+ LF  MR
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 252 EDGVGYDPVSYIAILTACSHG-GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
           E G+  D  +  A++TAC    GL+ +          DS          ++   G+ G +
Sbjct: 133 EMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVN---NALLTYYGKNGDL 189

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWA 348
           +DA ++   +    D   W +++ A   YG  + G+ A
Sbjct: 190 DDAKRVFYGMGGIRDEVSWNSMIVA---YGQHQEGSKA 224



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 30/181 (16%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  LF  +AE N VS N+M+A +AQ+ +E+++L L + M      P S+T
Sbjct: 388 MYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSIT 447

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             +VL ACA           H   + +G N+                  N+ +  FNI  
Sbjct: 448 FISVLSACA-----------HTGRVEEGWNY-----------------FNMMKEKFNIEP 479

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA-AIKQGKE 179
             E  Y+ +I    +    SE+ +L + M          S +GA     N+  A+K   +
Sbjct: 480 EAE-HYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQ 538

Query: 180 I 180
           +
Sbjct: 539 V 539


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 145/418 (34%), Positives = 251/418 (60%), Gaps = 6/418 (1%)

Query: 2   YAKSSRPAEASYLFHNIAE-KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y K+    +A  +F+ +   ++ VSWN+M+  + Q++   KAL L +EM       +  T
Sbjct: 183 YGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFT 242

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC-LNLAQNVFN-I 118
           L +VL A      L  G + H ++I+ G + +  + + L D+Y+KCG  ++  + VF  I
Sbjct: 243 LASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEI 302

Query: 119 SFRDEVSYNILIVGYSQTSD-CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  D V +N ++ GYSQ  +   ++L  F +M+ +G + +  SF+  ISAC+NL++  QG
Sbjct: 303 TEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQG 362

Query: 178 KEIHGVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           K+IH + ++  + ++ + V N+++  Y++ G +  A ++FD +   ++ S N++I GY  
Sbjct: 363 KQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQ 422

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G    +++LF+ M E  +    +++I++L+AC+H G VE+G  YF+ M+   +++P   
Sbjct: 423 HGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAE 482

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY+CM+DLLGRAG + +A  LI  +P  P +  W +LLGACR +GN+EL   AA  +  L
Sbjct: 483 HYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQL 542

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +P +   Y++LSNMYA AG+W+E + VR+ M+ R  KK PGCSW++ +  +  FV  D
Sbjct: 543 EPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAED 600



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 164/360 (45%), Gaps = 46/360 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K  R A A   F +I++ N+ S+NA++A +A+    L A QL  ++P     P+ V+
Sbjct: 52  LYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPE----PDLVS 107

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF-------------------------- 94
              ++ A A      P   + + +   GL+ D F                          
Sbjct: 108 YNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSS 167

Query: 95  -------LTNALTDMYAKCGCLNLAQNVFN--ISFRDEVSYNILIVGYSQTSDCSESLSL 145
                  + NAL   Y K G L+ A+ VF      RDEVS+N +IV Y Q  + S++L L
Sbjct: 168 GFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGL 227

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           F EM   G+  D+ +    ++A   L  +  G + HG  I+   H +  V + ++D Y++
Sbjct: 228 FQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSK 287

Query: 206 -SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE-VDTAINLFEAMREDGVGYDP--VS 261
             G +    K+F+ +   D   WNT++ GY    E ++ A+  F  M+  G+GY P   S
Sbjct: 288 CGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQ--GIGYRPNDCS 345

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-CMVDLLGRAGLMEDAVKLIKNL 320
           ++ +++ACS+     +GK+         +    +     ++ +  + G ++DA +L   +
Sbjct: 346 FVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRM 405



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 137/305 (44%), Gaps = 37/305 (12%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN----- 117
           ++L  C     L  GK +H+  I+  +    + +N    +Y+KCG L  A+  F      
Sbjct: 13  HLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 118 --ISFR-------------------------DEVSYNILIVGYSQTSDCSESLSLFSEMR 150
              SF                          D VSYN LI  Y+   + + +L LFS MR
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 151 LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210
            +G+  D  +    I+AC +   +    ++H V +     +++ V N++L +Y ++G +D
Sbjct: 133 EMGLDMDXFTLSAVITACCDDVGLI--GQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 211 LANKIFDCL-PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
            A ++F  +  ++D  SWN++I+ YG   E   A+ LF+ M   G+  D  +  ++LTA 
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250

Query: 270 SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR-AGLMEDAVKLIKNLPVEPDANI 328
           +    +  G ++  ++            + ++DL  +  G M D  K+ + +  EPD  +
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEI-TEPDLVL 309

Query: 329 WGALL 333
           W  ++
Sbjct: 310 WNTMV 314



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 7/158 (4%)

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
           ++F  N+I+  Y +  R  +A+++FD +P  D  S+NTLI  Y   GE   A+ LF  MR
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 252 EDGVGYDPVSYIAILTACSHG-GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
           E G+  D  +  A++TAC    GL+ +          DS          ++   G+ G +
Sbjct: 133 EMGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVN---NALLTYYGKNGDL 189

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWA 348
           +DA ++   +    D   W +++ A   YG  + G+ A
Sbjct: 190 DDAKRVFYGMGGIRDEVSWNSMIVA---YGQHQEGSKA 224



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 30/181 (16%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  LF  +AE N VS N+M+A +AQ+ +E+++L L + M      P S+T
Sbjct: 388 MYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSIT 447

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             +VL ACA           H   + +G N+                  N+ +  FNI  
Sbjct: 448 FISVLSACA-----------HTGRVEEGWNY-----------------FNMMKEKFNIEP 479

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA-AIKQGKE 179
             E  Y+ +I    +    SE+ +L + M          S +GA     N+  A+K   +
Sbjct: 480 EAE-HYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQ 538

Query: 180 I 180
           +
Sbjct: 539 V 539


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 142/405 (35%), Positives = 236/405 (58%), Gaps = 2/405 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A +LF  I +K+I+ +N M   +A++     A  L  E+      P+  T +++L ACA 
Sbjct: 83  AHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACAS 142

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              LR G  +H   ++ GLN ++++   L +MYA+C  +N A+ VF+ +     VSYN +
Sbjct: 143 SKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAI 202

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY+++S  +E+LSLF E++   ++   V+ +  I +CA L A+  GK IH    +K  
Sbjct: 203 ITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGF 262

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             ++ V  +++D + + G +  A  IF+ + V+D+ +W+ +I+ +   G+   AI++FE 
Sbjct: 263 DKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEE 322

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAG 308
           M+ +GV  D ++++ +L ACSH GLVE+G+ YF  M +   + P   HY CMVDLLGRAG
Sbjct: 323 MKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAG 382

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
            +++A   +  L ++    +W  LL AC  +GNVE+     E +F L   H G Y++LSN
Sbjct: 383 HLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSN 442

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +YA  G+W++ + +R+LMK R   K PGCS V+  + V +F   D
Sbjct: 443 LYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGD 487



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 143/272 (52%), Gaps = 19/272 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+ +    A  +F  + +  IVS+NA++  +A++    +AL L RE+   N  P  VT
Sbjct: 174 MYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVT 233

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +V+ +CA    L  GK IH  + +KG +  + +  AL DM+AKCG L  A ++F  + 
Sbjct: 234 MLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMR 293

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK- 178
            RD  +++ +IV ++   D  +++S+F EM+  G++ D ++F+G + AC++   ++QG+ 
Sbjct: 294 VRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRG 353

Query: 179 ------EIHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTL 230
                 + +G+T   KH          ++D   R+G +D A    D L +K +   W TL
Sbjct: 354 YFYSMSKTYGITPGIKHY-------GCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTL 406

Query: 231 ILGYGMLGEVDTAINLFEAMRE--DGVGYDPV 260
           +      G V+ A  + E + E  D  G D V
Sbjct: 407 LSACSTHGNVEMAKRVIERIFELDDAHGGDYV 438



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 116/276 (42%), Gaps = 55/276 (19%)

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT---RSGRIDLANKIFDC 218
           +  +S C +L  +KQ   I   TI+ +L + + V   +++F T    +  +D A+ +FD 
Sbjct: 33  LSLLSKCTSLNELKQ---IQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQ 89

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +  KD   +N +  GY        A +LF  +   G+  D  ++ ++L AC+    + +G
Sbjct: 90  ILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREG 149

Query: 279 -----------------------------------KKYFDEMQADSVKPTEMHYACMVDL 303
                                              +  FDEM+    +P  + Y  ++  
Sbjct: 150 MGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEME----QPCIVSYNAIITG 205

Query: 304 LGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
             R+    +A+ L + L    +EP      +++ +C + G ++LG W  E+   +K +  
Sbjct: 206 YARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEY---VKKKGF 262

Query: 361 GYYI----LLSNMYAEAGKWDEASKVRELMKSREAK 392
             Y+     L +M+A+ G   +A  + E M+ R+ +
Sbjct: 263 DKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQ 298


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 148/417 (35%), Positives = 238/417 (57%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSV 59
           MYAK      A  +F  +  +N+VSWN M+  F QN+L  +A+   + + + N    + V
Sbjct: 174 MYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEV 233

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           + ++V  ACA    L  GK++H   ++ G+   +++ N+L+DMY KCG  N    +F N 
Sbjct: 234 SFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNT 293

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD V++NI+I+ Y    +  ++ + F  MR  G   D  S+   + +CANLAA+ QG 
Sbjct: 294 GARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGT 353

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH   IR     +L VA+S++  Y + G +  A +IF+    ++   W  +I      G
Sbjct: 354 LIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHG 413

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
             +  + LFE M  +G+  D ++++++L+ACSH G VE+G  YF+ M +   + P   HY
Sbjct: 414 HANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHY 473

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           AC+VDLL RAG ++ A + I+ +P++PDA++WGALL ACR + N+ +G   A  LF L+P
Sbjct: 474 ACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEP 533

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            + G Y+LL N+    G  +EA +VR  M+S   +K PGCSW+  ++    F V+D+
Sbjct: 534 DNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKNSTYVFTVHDK 590



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 183/375 (48%), Gaps = 11/375 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           +YAK     +   LF +  +  KN+VSW +++    + +   KAL     M     +PN 
Sbjct: 71  LYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNH 130

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
            T + VL AC        G+++H+ + + G   ++F+ +AL DMYAKC  + +A+ VF  
Sbjct: 131 YTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEE 190

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-DVVSFMGAISACANLAAIKQ 176
           +  R+ VS+N +IVG+ Q     +++  F  + L  +   D VSF    SACAN   ++ 
Sbjct: 191 MPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEF 250

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK++HGV ++  +   +++ NS+ D Y + G  +   K+F     +D  +WN +I+ Y  
Sbjct: 251 GKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVY 310

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
               + A N F  MR  G   D  SY ++L +C++   + +G    +++           
Sbjct: 311 NHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRV 370

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANI--WGALLGACRIYGNVELGAWAAEHLFM 354
            + ++ +  + G + DA ++ +      D N+  W A++ AC+ +G+        E +  
Sbjct: 371 ASSLITMYAKCGSLVDAFQIFEE---TEDRNVVCWTAIIAACQQHGHANWVVELFEQMLR 427

Query: 355 --LKPQHCGYYILLS 367
             +KP +  +  +LS
Sbjct: 428 EGIKPDYITFVSVLS 442



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 142/285 (49%), Gaps = 7/285 (2%)

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
           F + +T  N L  C+R    +   +IH+++I   L    FL N L ++YAKCG ++    
Sbjct: 26  FLHPLTSLNSLLNCSRTS--KHATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLL 83

Query: 115 VFNISFRDE---VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
           +F+ +  D    VS+  LI   ++     ++L+ F+ MR  G+  +  +F   +SAC + 
Sbjct: 84  LFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDT 143

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
            A   G+++H +  +      +FV ++++D Y +   + +A K+F+ +PV++  SWNT+I
Sbjct: 144 TASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMI 203

Query: 232 LGYGMLGEVDTAINLFEA-MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           +G+      D AI  F+  + E+    D VS+ ++ +AC++ G +E GK+         V
Sbjct: 204 VGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGV 263

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                    + D+ G+ GL  D  KL  N     D   W  ++ A
Sbjct: 264 WNLVYINNSLSDMYGKCGLFNDVAKLFSNTGAR-DVVTWNIMIMA 307


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 154/428 (35%), Positives = 247/428 (57%), Gaps = 19/428 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE------ 54
           MY+   +  +A  +F  I ++NIVSW +M+  +  N   L A+ L +++ I         
Sbjct: 120 MYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATM 179

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG--CLNLA 112
           F +S+ + +V+ AC+R       + IH+ +I++G +  + + N L D YAK G   + +A
Sbjct: 180 FLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVA 239

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF-----MGAIS 166
           + +F+ I  +D VSYN ++  Y+Q+   +E+  +F  +    +K  VV+F        + 
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRL----IKEKVVTFNCITLSTVLL 295

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
           A ++  A++ GK IH   IR  L   + V  SI+D Y + GR++ A   FD +  K+  S
Sbjct: 296 AVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRS 355

Query: 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
           W  +I GYGM G    A+ LF AM + GV  + ++++++L ACSH GL + G  +F+ M+
Sbjct: 356 WTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMK 415

Query: 287 AD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
               V+P   HY CMVDLLGRAG ++ A  LI+ + +EPD+ IW +LL ACRI+ NVEL 
Sbjct: 416 GRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELA 475

Query: 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDE 405
             +   LF L P +CGYY+LLS++YA++G+W +  +VR  MK+R   K PG S ++   E
Sbjct: 476 EISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGE 535

Query: 406 VQDFVVND 413
           V  F++ D
Sbjct: 536 VHVFLIGD 543



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 172/339 (50%), Gaps = 12/339 (3%)

Query: 14  LFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGH 72
           LF+   +K ++ SWN+++A+ A++    +AL+    M   + +P   +    + AC+   
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLL 90

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
            +  GK+ H +    G   D+F+++AL  MY+ CG L  A+ VF+ I  R+ VS+  +I 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150

Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGA------ISACANLAAIKQGKEIHGVTI 185
           GY    +  +++SLF ++ +     D   F+ +      ISAC+ +AA    + IH   I
Sbjct: 151 GYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVI 210

Query: 186 RKHLHTHLFVANSILDFYTRSGR--IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
           ++     + V N++LD Y + G   + +A KIFD +  KD  S+N+++  Y   G  + A
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270

Query: 244 INLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
            ++F  + +E  V ++ ++   +L A SH G +  GK   D++    ++   +    ++D
Sbjct: 271 FDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIID 330

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           +  + G +E A +L  +     +   W A++    ++G+
Sbjct: 331 MYCKCGRVETA-RLAFDRMKNKNVRSWTAMIAGYGMHGH 368


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 143/415 (34%), Positives = 235/415 (56%), Gaps = 2/415 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +S     A  +F  + E+N+ +WNAMVA   Q     + L L   M      P+   L
Sbjct: 128 YFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFAL 187

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            +VL  CA    L  G+++H  + + G  F+L + ++L  MY KCG L   + +   +  
Sbjct: 188 GSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPS 247

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ V++N LI G +Q     E L  ++ M++ G + D ++F+  IS+C+ LA + QG++I
Sbjct: 248 QNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQI 307

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   I+      + V +S++  Y+R G ++ + K+F      D   W+++I  YG  G  
Sbjct: 308 HAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRG 367

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYAC 299
             AI+LF  M ++ +  + V+++++L ACSH GL EKG K+FD M +   VKP   HY C
Sbjct: 368 VEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTC 427

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGR G +E+A  LI+++PV+ D   W  LL AC+I+   E+    +E +F L P+ 
Sbjct: 428 MVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRD 487

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
              Y+LLSN++A   +WD+ S VR+ M+ R+ KK PG SW++ ++++  F + D+
Sbjct: 488 PVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDK 542



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 144/313 (46%), Gaps = 35/313 (11%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            +++L +C   + L  GK++H+ II  G + D F++N L ++Y+KCG L+ A  +F +  
Sbjct: 55  FSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMP 114

Query: 121 RDEV-SYNILIVGYSQTSDC-------------------------------SESLSLFSE 148
           R  + S NILI GY ++ D                                 E L LFS 
Sbjct: 115 RKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSR 174

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M  LG   D  +    +  CA L A+  G+++HG   +     +L V +S+   Y + G 
Sbjct: 175 MNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGS 234

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +    ++   +P ++  +WNTLI G    G  +  ++ +  M+  G   D +++++++++
Sbjct: 235 LGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISS 294

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE-PDAN 327
           CS    + +G++   E+            + ++ +  R G +E ++K+   L  E  D  
Sbjct: 295 CSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVF--LECENGDVV 352

Query: 328 IWGALLGACRIYG 340
            W +++ A   +G
Sbjct: 353 CWSSMIAAYGFHG 365



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 131/269 (48%), Gaps = 6/269 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     E   L   +  +N+V+WN ++A  AQN    + L     M +    P+ +T
Sbjct: 228 MYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKIT 287

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +V+ +C+    L  G++IHA +I+ G +  + + ++L  MY++CGCL  +  VF    
Sbjct: 288 FVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECE 347

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V ++ +I  Y       E++ LF++M    ++ + V+F+  + AC++    ++G +
Sbjct: 348 NGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIK 407

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGML 237
              + + K+ +   L     ++D   R G ++ A  +   +PVK D  +W TL+    + 
Sbjct: 408 FFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIH 467

Query: 238 GEVDTAINLF-EAMREDGVGYDPVSYIAI 265
            + + A  +  E  R D    DPV Y+ +
Sbjct: 468 KKTEMARRISEEVFRLD--PRDPVPYVLL 494


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 148/417 (35%), Positives = 233/417 (55%), Gaps = 2/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A   F    +K+ ++W+AM+  +AQ     +AL L   M ++   P+  T
Sbjct: 258 MYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFT 317

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V+ AC+    L  GK+IH   ++ G    ++   AL DMYAKCG L  A+  F+ + 
Sbjct: 318 FVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLK 377

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V +  +I GY+Q  +   +L+L+  M++  +    ++    + AC++LAA++QGK+
Sbjct: 378 EPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQ 437

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH  TI+      + + +++   Y + G ++  N +F  +P +D  +WN +I G    GE
Sbjct: 438 IHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGE 497

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LFE +R      D V+++ +L+ACSH GLVE+GK YF  M  +  + P   HYA
Sbjct: 498 GLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYA 557

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+L RAG + +  + I++  ++    +W  LLGACR Y N ELGA+A E L  L  Q
Sbjct: 558 CMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQ 617

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
               YILLS++Y   G+ D+  +VR LMK R   K PGCSW++ + +V  FVV D++
Sbjct: 618 ESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWIELKSQVHVFVVGDQI 674



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 164/336 (48%), Gaps = 4/336 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKA--LQLVREMPIHNEFPNS 58
           +YAK     +A  +F +I  K++VSWN ++  ++Q      +  ++L + M   N  PN 
Sbjct: 54  LYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNG 113

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T + V  A +       G + HA  I+    +D+F+ ++L +MY K GC+  A+ VF+ 
Sbjct: 114 HTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDT 173

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           I  R+ VS+  +I GY+      E+  LF  MR     HD   +   +SA      +  G
Sbjct: 174 IPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYG 233

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K+IH + ++  L +   V N+++  Y + G +D A K F+    KD  +W+ +I GY   
Sbjct: 234 KQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQA 293

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G+   A+NLF  M  +G      +++ ++ ACS  G +E+GK+          +      
Sbjct: 294 GDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFM 353

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
             +VD+  + G + DA K    L  EPD  +W +++
Sbjct: 354 TALVDMYAKCGSLVDARKGFDYLK-EPDIVLWTSMI 388



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 145/281 (51%), Gaps = 4/281 (1%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P   +  ++L  C R   L+ GK IHA+++R G    ++LTN+L ++YAKCG +  A+ V
Sbjct: 8   PQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLV 67

Query: 116 F-NISFRDEVSYNILIVGYSQTSDCSES--LSLFSEMRLLGMKHDVVSFMGAISACANLA 172
           F +I+ +D VS+N LI GYSQ      S  + LF  MR      +  +F G  +A ++  
Sbjct: 68  FESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSP 127

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
               G + H + I+      +FV +S+++ Y + G +  A K+FD +P +++ SW T+I 
Sbjct: 128 ETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIIS 187

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
           GY M      A  LF  MR +   +D   Y ++L+A +   LV  GK+       + +  
Sbjct: 188 GYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLS 247

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                  +V + G+ G ++DA+K  + L  + D   W A++
Sbjct: 248 IASVGNALVTMYGKCGCLDDALKTFE-LSGDKDDITWSAMI 287



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 19/210 (9%)

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           SF+  +  C     +++GK IH   +R    + +++ NS+++ Y + G I  A  +F+ +
Sbjct: 12  SFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESI 71

Query: 220 PVKDSASWNTLILGYGMLGEVDTA--INLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
             KD  SWN LI GY   G V  +  + LF+ MR +    +  ++  + TA S       
Sbjct: 72  TNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAAS------S 125

Query: 278 GKKYFDEMQADSVKPTEMHY------ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
             + F  +QA ++     ++      + ++++  + G M DA K+   +P E +   W  
Sbjct: 126 SPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIP-ERNTVSWAT 184

Query: 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCG 361
           ++    +    E  A+ A  LF L  +  G
Sbjct: 185 IISGYAM----ERMAFEAWELFXLMRREEG 210


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 142/416 (34%), Positives = 232/416 (55%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +      LF  +   ++VSW  ++  + Q   E  A++  + M   N  PN  T
Sbjct: 302 MYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYT 361

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V+ ACA     + G++IH  ++R GL   L + N++  +Y+K G L  A  VF+ I+
Sbjct: 362 FAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGIT 421

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S++ +I  YSQ     E+    S MR  G K +  +    +S C ++A ++QGK+
Sbjct: 422 RKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQ 481

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +   +     V ++++  Y++ G ++ A+KIF+ + + +  SW  +I GY   G 
Sbjct: 482 VHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGY 541

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AINLFE +   G+  D V++I +LTACSH G+V+ G  YF  M  +  + P++ HY 
Sbjct: 542 SQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYG 601

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C++DLL RAG + +A  +I+++P   D  +W  LL +CR++G+V+ G W AE L  L P 
Sbjct: 602 CIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPN 661

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G +I L+N+YA  G+W EA+ +R+LMKS+   K  G SWV   D++  FV  D+
Sbjct: 662 SAGTHIALANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDKLNAFVAGDQ 717



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 166/343 (48%), Gaps = 6/343 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +  +   +F  + ++N+VSW A++A        ++AL    EM I     +S T
Sbjct: 201 MYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHT 260

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
               L A A    L  GK IH + I++G +   F+ N L  MY KCG  +    +F  + 
Sbjct: 261 FAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMK 320

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VS+  LI  Y Q  +   ++  F  MR   +  +  +F   ISACANLA  K G++
Sbjct: 321 MPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQ 380

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R  L   L VANSI+  Y++SG +  A+ +F  +  KD  SW+T+I  Y   G 
Sbjct: 381 IHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGY 440

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A +    MR +G   +  +  ++L+ C    L+E+GK+    +    +    M ++ 
Sbjct: 441 AKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSA 500

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANI--WGALLGACRIYG 340
           ++ +  + G +E+A K+   + +    NI  W A++     +G
Sbjct: 501 LISMYSKCGSVEEASKIFNGMKIN---NIISWTAMINGYAEHG 540



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 154/312 (49%), Gaps = 2/312 (0%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           K  +  ++ Y+F  +  ++ +SW  ++A +       +AL L   M +         + +
Sbjct: 102 KQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMIS 161

Query: 64  V-LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
           V L AC  G  +  G+ +H   ++ GL   +F+++AL DMY K G +     VF  ++ R
Sbjct: 162 VALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKR 221

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + VS+  +I G        E+L  FSEM +  + +D  +F  A+ A A+ + +  GK IH
Sbjct: 222 NVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIH 281

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
             TI++      FV N++   Y + G+ D   ++F+ + + D  SW TLI  Y   GE +
Sbjct: 282 TQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEE 341

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            A+  F+ MR+  V  +  ++ A+++AC++  + + G++    +    +         +V
Sbjct: 342 HAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIV 401

Query: 302 DLLGRAGLMEDA 313
            L  ++GL++ A
Sbjct: 402 TLYSKSGLLKSA 413


>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 142/443 (32%), Positives = 250/443 (56%), Gaps = 35/443 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA    P  +  +F ++  KN+  WN+++  +A+NRL  +A QL  +M   +  P+  TL
Sbjct: 68  YAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTL 127

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           + +    +    L  GK IH + IR G   D  + N++  MY KCG    ++ VF+ ++ 
Sbjct: 128 STLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTI 187

Query: 121 RDEVSYNILIVGYS-------------------------------QTSDCSESLSLFSEM 149
           R+  S+N+LI GY+                               +  D  E+LSLF +M
Sbjct: 188 RNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDM 247

Query: 150 RLL-GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           +++ G++ + VS +  + AC++ + +  G++IHG  +RK L+  + + N+++D Y++ G 
Sbjct: 248 QVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGS 307

Query: 209 IDLANKIF-DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
           +D A ++F D    KD+ SW+++I GYG+ G+   AI L++ M + G+  D ++ + IL+
Sbjct: 308 LDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILS 367

Query: 268 ACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
           ACS  GLV +G   +  +  D  ++PT   +AC+VD+LGRAG ++ A+  IK +PVEP  
Sbjct: 368 ACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGP 427

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
           ++WGAL+    I+G++E+   A   L  L+P++   Y+ +SN+YA + +WD  ++VR +M
Sbjct: 428 SVWGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMM 487

Query: 387 KSREAKKNPGCSWVQTRDEVQDF 409
           K +  +K PGCSW+   ++   F
Sbjct: 488 KDKRLRKVPGCSWISINNKTHCF 510



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 143/320 (44%), Gaps = 33/320 (10%)

Query: 54  EFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ 113
           EF  S+ L   L        L+  ++ H+RI+  GL+ +  L   L   YA C     ++
Sbjct: 19  EFDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSR 78

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
            VF+ +  ++   +N LI GY++    +E+  LF++M    +  D  +        + L 
Sbjct: 79  LVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELG 138

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           A+  GK IHG +IR    +   VANSI+  Y + G  + + K+FD + +++S SWN LI 
Sbjct: 139 ALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIA 198

Query: 233 GYGMLGEV-------------------------------DTAINLFEAMRE-DGVGYDPV 260
           GY + G +                               D A++LF  M+  DG+  + V
Sbjct: 199 GYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRV 258

Query: 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           S +++L ACS    +  G++         +         ++D+  + G ++ A ++ ++ 
Sbjct: 259 SLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDD 318

Query: 321 PVEPDANIWGALLGACRIYG 340
            +  DA  W +++    ++G
Sbjct: 319 SLCKDAISWSSMISGYGLHG 338


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 144/448 (32%), Positives = 249/448 (55%), Gaps = 35/448 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPI-HNEFPNSV 59
           MY  S    +A  LF  +A++++VSW  ++  +A+  L  +A ++   M +  + +PN V
Sbjct: 175 MYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEV 234

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
           TL     A  +   L  G+ +H  I+  G    + L NAL DM+ KCGC+  A+ VF+  
Sbjct: 235 TLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGM 294

Query: 118 ------------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
                                         I  R+ VS++ ++  YS  +   E++ +F+
Sbjct: 295 PIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFN 354

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH-LHTHLFVANSILDFYTRS 206
           +M   G++    + +  +SACA L ++  G  ++   I  H +     ++N+ +D + + 
Sbjct: 355 DMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKC 414

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           G +  A+++F  +  K+  SWNT+I+ +G+ G+ + A++LF+  + +G+  D  +YI +L
Sbjct: 415 GDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVL 474

Query: 267 TACSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD 325
           +ACSHGGLV +G+ +F EM+    ++P   HYACM+DLLG+ GL+++A ++ +++PV  D
Sbjct: 475 SACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGAD 534

Query: 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385
              WGALL ACR++GNVE+G  AA+ L  L P   G Y+L+S +YA   KW +   +R +
Sbjct: 535 EAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTV 594

Query: 386 MKSREAKKNPGCSWVQTRDEVQDFVVND 413
           M+ R  KKNPGCS ++   +  +F+V D
Sbjct: 595 MRDRRVKKNPGCSSIEVDGKCHEFLVAD 622



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 112/222 (50%), Gaps = 7/222 (3%)

Query: 76  PGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGY 133
           P + IH    ++G +   +   NAL  MY     L  A+ +F+ ++ RD VS+  LI GY
Sbjct: 148 PTEAIHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGY 207

Query: 134 SQTSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           ++     E+  +F  M +   +  + V+ + A SA   +  +  G+ +H   +       
Sbjct: 208 ARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMS 267

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           + + N+++D + + G +  A ++FD +P+KD  SW +++  Y   G+++ A  LF+ +  
Sbjct: 268 VNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPN 327

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
             V    VS+  ++ A SH  + ++  + F++M A  V+P +
Sbjct: 328 RNV----VSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPID 365


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 145/414 (35%), Positives = 233/414 (56%), Gaps = 2/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  +  K+++SW AM++   QN     A+ + R M      P++ T
Sbjct: 291 MYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTAT 350

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VL ACA       G  +H  I+R+ +  D+   N+L  MYAKCG L  + +VF+ +S
Sbjct: 351 IASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMS 410

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N ++ G++Q     ++L LF+EMR    + D ++ +  + ACA++ A+ QGK 
Sbjct: 411 RRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKW 470

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH    +  L   + +  +++D Y++ G +  A K FD +P +D  SW+++I GYG  G+
Sbjct: 471 IHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGK 530

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            +TA+ ++      G+  + V Y++IL+ACSH GLV++G  +F  M  D  ++P   H A
Sbjct: 531 GETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRA 590

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLL RAG +E+A    K +  +P  ++ G LL ACR  GNVELG   A  + +LKP 
Sbjct: 591 CIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPA 650

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVN 412
           + G Y+ L++ YA   +WD   +V   MKS   KK PG S+++    +  F  +
Sbjct: 651 NAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTITTFFTD 704



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 180/371 (48%), Gaps = 6/371 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K  R  +A  LF  +  ++++SWN++V+ +AQ     + LQL+  M      P+  T
Sbjct: 190 VYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQT 249

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +++ A A    L  GK +H  I+R GL  D  +  +L  MY KCG +N A  +F  + 
Sbjct: 250 FGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMM 309

Query: 120 FRDEVSYNILIVGYSQTSDCSE-SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            +D +S+  +I G  Q +DC++ ++++F  M    +     +    ++ACA L +   G 
Sbjct: 310 HKDVISWTAMISGLVQ-NDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGT 368

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +HG  +R+ +   +   NS++  Y + G ++ +  +FD +  +D  SWN ++ G+   G
Sbjct: 369 SVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNG 428

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
            +  A+ LF  MR+     D ++ +++L AC+  G + +GK   + +    + P  +   
Sbjct: 429 HLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDT 488

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--LK 356
            +VD+  + G +  A K    +P + D   W +++     +G  E             ++
Sbjct: 489 ALVDMYSKCGDLGSAQKCFDRMP-QQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQ 547

Query: 357 PQHCGYYILLS 367
           P H  Y  +LS
Sbjct: 548 PNHVIYLSILS 558



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 103/429 (24%), Positives = 178/429 (41%), Gaps = 47/429 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K      A  +F  + ++N+V W  M+  + +      A  +   M      P+SVT+
Sbjct: 93  YSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTM 152

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
             +L        L+    +HA +I+ G   D+ L N++ ++Y KCG +  AQ +F +   
Sbjct: 153 LGLLSGVLELVHLQC---LHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDA 209

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD +S+N L+ GY+Q  +  E L L   M+  G++ D  +F   +SA A  + +  GK +
Sbjct: 210 RDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMV 269

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  +R  L     +  S++  Y + G ++ A +IF+ +  KD  SW  +I G       
Sbjct: 270 HGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCA 329

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           D A+ +F  M +  V     +  ++L AC+  G    G      +    +K        +
Sbjct: 330 DMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSL 389

Query: 301 VDLLGRAGLMEDAVKLIKNLP----------------------------------VEPDA 326
           V +  + G +E +  +   +                                     PD+
Sbjct: 390 VTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDS 449

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC-GYYIL----LSNMYAEAGKWDEASK 381
               +LL AC   G +  G W   H F+ K   C G  IL    L +MY++ G    A K
Sbjct: 450 ITVVSLLQACASIGALHQGKWI--HNFVTKS--CLGPCILIDTALVDMYSKCGDLGSAQK 505

Query: 382 VRELMKSRE 390
             + M  ++
Sbjct: 506 CFDRMPQQD 514



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 184/415 (44%), Gaps = 48/415 (11%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL 74
           F N A K   S+NA++   +        L     M   +  P++ T  +++ AC      
Sbjct: 8   FLNPATK---SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLF 64

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGY 133
             G   H R+I  G + D ++  +L + Y+K G    A+ VF+ +  R+ V +  +I  Y
Sbjct: 65  SHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCY 124

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           ++  +   + S+++ MR  G++   V+ +G +S    L  ++    +H   I+    + +
Sbjct: 125 TRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC---LHACVIQYGFGSDV 181

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
            +ANS+L+ Y + GR++ A  +F+ +  +D  SWN+L+ GY  LG +   + L   M+ D
Sbjct: 182 ALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTD 241

Query: 254 GVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQ---------------A 287
           G+  D  ++ ++++A +           HG ++  G +    ++               A
Sbjct: 242 GIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSA 301

Query: 288 DSVKPTEMH-----YACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIY 339
             +    MH     +  M+  L +    + AV + + +    V P      ++L AC   
Sbjct: 302 FRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAEL 361

Query: 340 GNVELGAWAAEHLFMLKPQHCGYYILLSN----MYAEAGKWDEASKVRELMKSRE 390
           G+  LG   + H ++L+ Q     I   N    MYA+ G  +++  V + M  R+
Sbjct: 362 GSFPLG--TSVHGYILR-QRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRD 413


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 148/446 (33%), Positives = 233/446 (52%), Gaps = 34/446 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +   P +A  +F++I   +IVSW  +++ +       KA  +   +      P+S  +
Sbjct: 298 YTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCV 357

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---- 117
              + AC     L  G+ +H  + R  L  D  + NAL DMY++ G + +A +VF     
Sbjct: 358 VGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEI 417

Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                       +  R+ VS+  +I GY Q       L LF EM
Sbjct: 418 KDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEM 477

Query: 150 RLLGMK-HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           R  G     V++ +  +S CA++ A   G  +HG   + +L   + V N+++D Y +SG 
Sbjct: 478 RAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGA 537

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           + LA KIF  +P +D  SW T+I G  + G+   A+  F  M + G   + V+ +++L+A
Sbjct: 538 LVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSA 597

Query: 269 CSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           CSH GLV +G+  F +M Q   +KP   HY CMVDLLGRAGL+ +A +LI+++P++PD+ 
Sbjct: 598 CSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSV 657

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           IW +LL AC ++GN+ L   A + +  L+P   G YILL N+Y  A +W++A K R+ M+
Sbjct: 658 IWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMR 717

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVND 413
            R  KK PGCSWV+    V +F+  D
Sbjct: 718 DRRVKKKPGCSWVEVNGVVHEFLAED 743



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 10/239 (4%)

Query: 53  NEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLN 110
           N   N+ T   +L  C     L   K+IH + +  GL  +    L   L + Y + G   
Sbjct: 249 NAHMNTQTFYFLLQKCGS---LEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPV 305

Query: 111 LAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA 169
            AQ VFN I   D VS+  LI  Y  TS   ++ S+FS +   G++ D    +GA+SAC 
Sbjct: 306 DAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACG 365

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
           +   +  G+ +HG+  R  L +   V N+++D Y+RSG I++A  +F  + +KD +SW +
Sbjct: 366 HRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTS 425

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           L+ G+    +++ A  +F+ M       + VS+ A++T    G +   G + F EM+A+
Sbjct: 426 LLNGFIKCNDIEAARRIFDEMPM----RNSVSWTAMITGYVQGEVPIPGLELFQEMRAE 480


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  277 bits (708), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 144/422 (34%), Positives = 245/422 (58%), Gaps = 11/422 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+ S     AS LF    +K++V+W AM+  F +N    +A+    EM       N +T+
Sbjct: 148 YSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTV 207

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +VL A  +   +R G+ +H   +  G +  D+F+ ++L DMY KC C + AQ VF+ + 
Sbjct: 208 VSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMP 267

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV----SFMGAISACANLAAIK 175
            R+ V++  LI GY Q+    + + +F EM    +K DV     +    +SACA++ A+ 
Sbjct: 268 SRNVVTWTALIAGYVQSRCFDKGMLVFEEM----LKSDVAPNEKTLSSVLSACAHVGALH 323

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           +G+ +H   I+  +  +     +++D Y + G ++ A  +F+ L  K+  +W  +I G+ 
Sbjct: 324 RGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFA 383

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
             G    A +LF  M    V  + V+++A+L+AC+HGGLVE+G++ F  M+   +++   
Sbjct: 384 AHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKA 443

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYACMVDL GR GL+E+A  LI+ +P+EP   +WGAL G+C ++ + ELG +AA  +  
Sbjct: 444 DHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIK 503

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           L+P H G Y LL+N+Y+E+  WDE ++VR+ MK ++  K+PG SW++ + ++ +F+  D 
Sbjct: 504 LQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDD 563

Query: 415 MK 416
            K
Sbjct: 564 KK 565



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 164/337 (48%), Gaps = 12/337 (3%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFA-----QNRLELKALQLVREMPIHNEFPNSVTLTNVL 65
           A  L   +   +I  W++++ +F+       RL   A    R M  +   P+  T   +L
Sbjct: 55  ARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAY---RHMRRNGVIPSRHTFPPLL 111

Query: 66  PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEV 124
            A  +     P  + HA I++ GL+ D F+ N+L   Y+  G  + A  +F+    +D V
Sbjct: 112 KAVFKLRDSNPF-QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVV 170

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           ++  +I G+ +    SE++  F EM+  G+  + ++ +  + A   +  ++ G+ +HG+ 
Sbjct: 171 TWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLY 230

Query: 185 IRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
           +    +   +F+ +S++D Y +    D A K+FD +P ++  +W  LI GY      D  
Sbjct: 231 LETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKG 290

Query: 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303
           + +FE M +  V  +  +  ++L+AC+H G + +G++    M  +S++        ++DL
Sbjct: 291 MLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDL 350

Query: 304 LGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
             + G +E+A+ + + L  E +   W A++     +G
Sbjct: 351 YVKCGCLEEAILVFERLH-EKNVYTWTAMINGFAAHG 386



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 120/235 (51%), Gaps = 5/235 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K S   +A  +F  +  +N+V+W A++A + Q+R   K + +  EM   +  PN  T
Sbjct: 249 MYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKT 308

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L++VL ACA    L  G+ +H  +I+  +  +      L D+Y KCGCL  A  VF  + 
Sbjct: 309 LSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLH 368

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++  ++  +I G++      ++  LF  M    +  + V+FM  +SACA+   +++G+ 
Sbjct: 369 EKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRR 428

Query: 180 IHGVTIRKHLHTHLFVAN--SILDFYTRSGRIDLANKIFDCLPVKDS-ASWNTLI 231
           +  ++++   +  L   +   ++D + R G ++ A  + + +P++ +   W  L 
Sbjct: 429 LF-LSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALF 482


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  277 bits (708), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 152/418 (36%), Positives = 237/418 (56%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAEASYLFHN--IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY K S    A  LF     + K  V +N++++ +A N      + L  EM       N 
Sbjct: 54  MYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEING 113

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           VT+  ++  C     L  G  +H   ++ GL+ D  + N L  MY K G ++  + +F+ 
Sbjct: 114 VTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDE 173

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  +  +++N +I GY+Q    +  L L+ EM   G   D ++ +G +S+CA+L A+  G
Sbjct: 174 MPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVG 233

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           KE+          ++ F+ N++++ Y R G +  A  IFD +PVK   SW  +I GYGM 
Sbjct: 234 KEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMH 293

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G+ + A+ LF+ M   G+  D  +++++L+ACSH GL  KG  YF  M+    ++P   H
Sbjct: 294 GQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEH 353

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y+CMVDLLGRAG + +A +LI+++ V  D  +WGALLGAC+I+ NVEL   A E +  L+
Sbjct: 354 YSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELE 413

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P + GYY+LLSN+Y EAG  +   +VR LM+ R+ KK+PGCS+V+ +  V  F   DR
Sbjct: 414 PTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDR 471



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 155/317 (48%), Gaps = 6/317 (1%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           PN+ T    + +CA       GK++H  + + G   + F+  +L  MY KC  ++ A+ +
Sbjct: 8   PNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKL 67

Query: 116 FN---ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
           F+    S +  V YN L+ GY+  S   + + LF EMR LG++ + V+ +G +  C    
Sbjct: 68  FDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPG 127

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
            +  G  +HG  ++  L     V N +L  Y +SG ID   K+FD +P K   +WN +I 
Sbjct: 128 NLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMIN 187

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
           GY   G  +  + L++ M   G   DP++ + +L++C+H G +  GK+   +M+      
Sbjct: 188 GYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSS 247

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
                  +V++  R G ++ A  +   +PV+   + W A++G   ++G  E+     + +
Sbjct: 248 NPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVS-WTAIIGGYGMHGQGEVAVGLFDEM 306

Query: 353 FM--LKPQHCGYYILLS 367
               +KP    +  +LS
Sbjct: 307 IRGGIKPDGTAFVSVLS 323



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 111/280 (39%), Gaps = 55/280 (19%)

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G   +  +F  AI +CA L+    GK++H    +       FV  S++  Y +   ID A
Sbjct: 5   GASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNA 64

Query: 213 NKIFDCLPV--KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI----- 265
            K+FD  P   K +  +N+L+ GY +   V   + LF  MRE GV  + V+ + +     
Sbjct: 65  RKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCG 124

Query: 266 ------LTACSHG------------------------GLVEKGKKYFDEMQADSVKPTEM 295
                 L  C HG                        G ++ G+K FDEM    +    +
Sbjct: 125 IPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGL----I 180

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVE---PDANIWGALLGACRIYGNVELGAWAAEHL 352
            +  M++   + GL  + ++L K +  +   PD      +L +C       LGA +    
Sbjct: 181 TWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSC-----AHLGALSVGKE 235

Query: 353 FMLKPQHCGYYI------LLSNMYAEAGKWDEASKVRELM 386
              K +  G+         L NMYA  G   +A  + + M
Sbjct: 236 VERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGM 275


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  277 bits (708), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 145/414 (35%), Positives = 233/414 (56%), Gaps = 2/414 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  +  K+++SW AM++   QN     A+ + R M      P++ T
Sbjct: 291 MYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTAT 350

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VL ACA       G  +H  I+R+ +  D+   N+L  MYAKCG L  + +VF+ +S
Sbjct: 351 IASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMS 410

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N ++ G++Q     ++L LF+EMR    + D ++ +  + ACA++ A+ QGK 
Sbjct: 411 RRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKW 470

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH    +  L   + +  +++D Y++ G +  A K FD +P +D  SW+++I GYG  G+
Sbjct: 471 IHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGK 530

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            +TA+ ++      G+  + V Y++IL+ACSH GLV++G  +F  M  D  ++P   H A
Sbjct: 531 GETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRA 590

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLL RAG +E+A    K +  +P  ++ G LL ACR  GNVELG   A  + +LKP 
Sbjct: 591 CIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPA 650

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVN 412
           + G Y+ L++ YA   +WD   +V   MKS   KK PG S+++    +  F  +
Sbjct: 651 NAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTITTFFTD 704



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 180/371 (48%), Gaps = 6/371 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K  R  +A  LF  +  ++++SWN++V+ +AQ     + LQL+  M      P+  T
Sbjct: 190 VYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQT 249

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +++ A A    L  GK +H  I+R GL  D  +  +L  MY KCG +N A  +F  + 
Sbjct: 250 FGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMM 309

Query: 120 FRDEVSYNILIVGYSQTSDCSE-SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            +D +S+  +I G  Q +DC++ ++++F  M    +     +    ++ACA L +   G 
Sbjct: 310 HKDVISWTAMISGLVQ-NDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGT 368

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +HG  +R+ +   +   NS++  Y + G ++ +  +FD +  +D  SWN ++ G+   G
Sbjct: 369 SVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNG 428

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
            +  A+ LF  MR+     D ++ +++L AC+  G + +GK   + +    + P  +   
Sbjct: 429 HLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDT 488

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--LK 356
            +VD+  + G +  A K    +P + D   W +++     +G  E             ++
Sbjct: 489 ALVDMYSKCGDLGSAQKCFDRMP-QQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQ 547

Query: 357 PQHCGYYILLS 367
           P H  Y  +LS
Sbjct: 548 PNHVIYLSILS 558



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 103/429 (24%), Positives = 178/429 (41%), Gaps = 47/429 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K      A  +F  + ++N+V W  M+  + +      A  +   M      P+SVT+
Sbjct: 93  YSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTM 152

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
             +L        L+    +HA +I+ G   D+ L N++ ++Y KCG +  AQ +F +   
Sbjct: 153 LGLLSGVLELVHLQC---LHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDA 209

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD +S+N L+ GY+Q  +  E L L   M+  G++ D  +F   +SA A  + +  GK +
Sbjct: 210 RDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMV 269

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  +R  L     +  S++  Y + G ++ A +IF+ +  KD  SW  +I G       
Sbjct: 270 HGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCA 329

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           D A+ +F  M +  V     +  ++L AC+  G    G      +    +K        +
Sbjct: 330 DMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSL 389

Query: 301 VDLLGRAGLMEDAVKLIKNLP----------------------------------VEPDA 326
           V +  + G +E +  +   +                                     PD+
Sbjct: 390 VTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDS 449

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC-GYYIL----LSNMYAEAGKWDEASK 381
               +LL AC   G +  G W   H F+ K   C G  IL    L +MY++ G    A K
Sbjct: 450 ITVVSLLQACASIGALHQGKWI--HNFVTKS--CLGPCILIDTALVDMYSKCGDLGSAQK 505

Query: 382 VRELMKSRE 390
             + M  ++
Sbjct: 506 CFDRMPQQD 514



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 184/415 (44%), Gaps = 48/415 (11%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL 74
           F N A K   S+NA++   +        L     M   +  P++ T  +++ AC      
Sbjct: 8   FLNPATK---SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLF 64

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGY 133
             G   H R+I  G + D ++  +L + Y+K G    A+ VF+ +  R+ V +  +I  Y
Sbjct: 65  SHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCY 124

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           ++  +   + S+++ MR  G++   V+ +G +S    L  ++    +H   I+    + +
Sbjct: 125 TRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC---LHACVIQYGFGSDV 181

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
            +ANS+L+ Y + GR++ A  +F+ +  +D  SWN+L+ GY  LG +   + L   M+ D
Sbjct: 182 ALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTD 241

Query: 254 GVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQ---------------A 287
           G+  D  ++ ++++A +           HG ++  G +    ++               A
Sbjct: 242 GIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSA 301

Query: 288 DSVKPTEMH-----YACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIY 339
             +    MH     +  M+  L +    + AV + + +    V P      ++L AC   
Sbjct: 302 FRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAEL 361

Query: 340 GNVELGAWAAEHLFMLKPQHCGYYILLSN----MYAEAGKWDEASKVRELMKSRE 390
           G+  LG   + H ++L+ Q     I   N    MYA+ G  +++  V + M  R+
Sbjct: 362 GSFPLG--TSVHGYILR-QRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRD 413


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  277 bits (708), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 140/417 (33%), Positives = 240/417 (57%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  LF +++E+N+VSWNA+V+ ++ +    +A+ L   M       +  T
Sbjct: 166 MYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYT 225

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + +++PA      L+ G  IH  IIR G   D  +  AL D+Y    C++ A  VF+  F
Sbjct: 226 IMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMF 285

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMR-LLGMKHDVVSFMGAISACANLAAIKQGK 178
            +D  ++ +++ G+S       ++  F++M  +  +K D +  MG +S+C++  A++QG+
Sbjct: 286 VKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGR 345

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H + I+     ++FV ++++D Y   G ++ A + F  +  KD   WN +I G GM G
Sbjct: 346 RVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNG 405

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK-PTEMHY 297
               AI+LF  M+  G+  D  +++++L ACSH G+V +G + F  M   S   P   HY
Sbjct: 406 YGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHY 465

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           AC++D+LGRAG ++ A   I N+P +PD +++  LLGACRI+GN++LG   ++ +F ++P
Sbjct: 466 ACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEP 525

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
              GYY+LLSNMYA AG W+     R  ++S+  KK+PG S ++   E+  F+  ++
Sbjct: 526 NDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEK 582



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 173/329 (52%), Gaps = 3/329 (0%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           A+A  +FH+   KN+VSW  +++  A+N   ++A+ + REM + N  PN+VT+++VLPA 
Sbjct: 73  ADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAF 132

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYN 127
           A    +R  K +H   +R G   ++F+  AL DMY+K GC+ +A+ +F ++S R+ VS+N
Sbjct: 133 ANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWN 192

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            ++ GYS      E++ LF+ MR  G+  D  + M  I A  ++  ++ G  IHG  IR 
Sbjct: 193 AIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRT 252

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                  +  +++D Y     +D A+++F  + VKD A+W  ++ G+      D AI  F
Sbjct: 253 GYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHF 312

Query: 248 EAMRE-DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
             M     +  D +  + IL++CSH G +++G++                 + ++D+   
Sbjct: 313 NKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYAN 372

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            G +EDA +    +  E D   W A++  
Sbjct: 373 CGNLEDAKRFFYGMG-EKDVVCWNAMIAG 400



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 136/261 (52%), Gaps = 2/261 (0%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVG 132
           L+P ++IHA+II  GL  + FL+N+L + Y  CG L  A+ +F +   ++ VS+ ILI G
Sbjct: 37  LKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISG 96

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
            ++     E++ +F EM +   K + V+    + A ANL  I+  K +H   +R     +
Sbjct: 97  LAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGN 156

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +FV  +++D Y++ G + +A ++F+ +  ++  SWN ++ GY   G  + AI+LF  MR 
Sbjct: 157 VFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRR 216

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
            G+  D  + ++++ A    G ++ G      +     +  +     ++D+      ++D
Sbjct: 217 KGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDD 276

Query: 313 AVKLIKNLPVEPDANIWGALL 333
           A ++   + V+ D   W  +L
Sbjct: 277 AHRVFSEMFVK-DVAAWTLML 296



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 1/173 (0%)

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           L  +K  ++IH   I   L  + F++NS+++ Y   G +  A +IF   P K+  SW  L
Sbjct: 34  LKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTIL 93

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           I G         AI++F  M       + V+  ++L A ++ GL+   K           
Sbjct: 94  ISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGF 153

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           +        +VD+  + G M  A +L +++  E +   W A++     +G  E
Sbjct: 154 EGNVFVETALVDMYSKFGCMGVARQLFESMS-ERNVVSWNAIVSGYSDHGFSE 205


>gi|53828565|gb|AAU94392.1| At4g14170 [Arabidopsis thaliana]
 gi|55733761|gb|AAV59277.1| At4g14170 [Arabidopsis thaliana]
          Length = 458

 Score =  277 bits (708), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 143/393 (36%), Positives = 228/393 (58%), Gaps = 3/393 (0%)

Query: 8   PAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLP 66
           P   S  +H +  +NI SWN ++  F+++    K++ L   M   +   P+  TL  +L 
Sbjct: 65  PTSLSVFWH-MPYRNIFSWNIIIGEFSRSGFASKSIDLFLRMWRESCVRPDDFTLPLILR 123

Query: 67  ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVS 125
           AC+     + G  IH   ++ G +  LF+++AL  MY   G L  A+ +F+ +  RD V 
Sbjct: 124 ACSASREAKSGDLIHVLCLKLGFSSSLFVSSALVIMYVDMGKLLHARKLFDDMPVRDSVL 183

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           Y  +  GY Q  +    L++F EM   G   D V  +  + AC  L A+K GK +HG  I
Sbjct: 184 YTAMFGGYVQQGEAMLGLAMFREMGYSGFALDSVVMVSLLMACGQLGALKHGKSVHGWCI 243

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
           R+     L + N+I D Y +   +D A+ +F  +  +D  SW++LILGYG+ G+V  +  
Sbjct: 244 RRCSCLGLNLGNAITDMYVKCSILDYAHTVFVNMSRRDVISWSSLILGYGLDGDVVMSFK 303

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           LF+ M ++G+  + V+++ +L+AC+HGGLVEK   YF  MQ  ++ P   HYA + D + 
Sbjct: 304 LFDEMLKEGIEPNAVTFLGVLSACAHGGLVEKSWLYFRLMQEYNIVPELKHYASVADCMS 363

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365
           RAGL+E+A K ++++PV+PD  + GA+L  C++YGNVE+G   A  L  LKP+   YY+ 
Sbjct: 364 RAGLLEEAEKFLEDMPVKPDEAVMGAVLSGCKVYGNVEVGERVARELIQLKPRKASYYVT 423

Query: 366 LSNMYAEAGKWDEASKVRELMKSREAKKNPGCS 398
           L+ +Y+ AG++DEA  +R+ MK ++  K PGCS
Sbjct: 424 LAGLYSAAGRFDEAESLRQWMKEKQISKVPGCS 456



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 2/245 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY    +   A  LF ++  ++ V + AM   + Q    +  L + REM       +SV 
Sbjct: 159 MYVDMGKLLHARKLFDDMPVRDSVLYTAMFGGYVQQGEAMLGLAMFREMGYSGFALDSVV 218

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + ++L AC +   L+ GK +H   IR+     L L NA+TDMY KC  L+ A  VF N+S
Sbjct: 219 MVSLLMACGQLGALKHGKSVHGWCIRRCSCLGLNLGNAITDMYVKCSILDYAHTVFVNMS 278

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S++ LI+GY    D   S  LF EM   G++ + V+F+G +SACA+   +++   
Sbjct: 279 RRDVISWSSLILGYGLDGDVVMSFKLFDEMLKEGIEPNAVTFLGVLSACAHGGLVEKSWL 338

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGMLG 238
              +    ++   L    S+ D  +R+G ++ A K  + +PVK D A    ++ G  + G
Sbjct: 339 YFRLMQEYNIVPELKHYASVADCMSRAGLLEEAEKFLEDMPVKPDEAVMGAVLSGCKVYG 398

Query: 239 EVDTA 243
            V+  
Sbjct: 399 NVEVG 403


>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
 gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
          Length = 648

 Score =  277 bits (708), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 146/418 (34%), Positives = 240/418 (57%), Gaps = 7/418 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+ R A A  LF  +  +N+V+WNA++ N   +   ++ ++    +      PN V+
Sbjct: 163 MYFKTGRLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPIETVEAYFGLRGAGGMPNVVS 222

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +     ACA    L  G++ H  + + G + D+ ++N++ D Y KC C+  A+ VF+ + 
Sbjct: 223 VCAFFNACAGMTCLSLGEQFHGFVAKCGFDKDVSVSNSMVDFYGKCRCMGKARLVFDGMG 282

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+  ++V Y+Q     E+  ++   R  G +         ++ CA L  +  G+ 
Sbjct: 283 VRNSVSWCSMVVAYAQNGAEEEAFLVYLGARRAGEEPTDFMVSSLLTTCAGLLGLDLGRA 342

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H V  R  +  ++FVA++++D Y + G I  A ++F  +P ++  +WN +I GY  +G+
Sbjct: 343 LHAVAARSCIDANIFVASALVDMYGKCGGIQDAEQVFFEMPQRNLVTWNAMIGGYAHIGD 402

Query: 240 VDTAINLFEAM---REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEM 295
              A+ +F+ M   RE    Y  ++ + +LTACS GGL ++G + F  M Q   ++P   
Sbjct: 403 AWNALAVFDEMIMGRETAPNY--ITIVNVLTACSRGGLTKEGYELFQTMKQRFGIEPRIE 460

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYAC+VDLLGRAG+ E A ++I+ +P+ P  ++WGALLG C+++G  ELG  AAE LF L
Sbjct: 461 HYACVVDLLGRAGMEEQAYEIIQGMPMRPSISVWGALLGGCKMHGKTELGRVAAEKLFEL 520

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            PQ  G ++LLSNM A AG+W EA+ VR+ MK+   KK+PG SW+  ++ V  F   D
Sbjct: 521 DPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSWITWKNIVHVFQAKD 578



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 184/406 (45%), Gaps = 28/406 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K   P  A+          +VS+ A ++  AQ+   L+AL     M      PN  T
Sbjct: 58  LYSKLDLPGAAAAALAADPSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFT 117

Query: 61  LTNVL-------PACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLA 112
             +         P CA       G ++HA  +R G L  D F++ A  DMY K G L LA
Sbjct: 118 FPSAFKAAASAPPRCAAAV----GPQVHALALRFGYLPDDAFVSCAALDMYFKTGRLALA 173

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
           + +F+ +  R+ V++N ++          E++  +  +R  G   +VVS     +ACA +
Sbjct: 174 RRLFDEMPNRNVVAWNAVMTNAVLDGRPIETVEAYFGLRGAGGMPNVVSVCAFFNACAGM 233

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
             +  G++ HG   +      + V+NS++DFY +   +  A  +FD + V++S SW +++
Sbjct: 234 TCLSLGEQFHGFVAKCGFDKDVSVSNSMVDFYGKCRCMGKARLVFDGMGVRNSVSWCSMV 293

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADS 289
           + Y   G  + A  ++   R    G +P  ++  ++LT C+    ++ G+          
Sbjct: 294 VAYAQNGAEEEAFLVYLGARR--AGEEPTDFMVSSLLTTCAGLLGLDLGRALHAVAARSC 351

Query: 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAA 349
           +       + +VD+ G+ G ++DA ++   +P + +   W A++G     G+    AW A
Sbjct: 352 IDANIFVASALVDMYGKCGGIQDAEQVFFEMP-QRNLVTWNAMIGGYAHIGD----AWNA 406

Query: 350 EHLF---MLKPQHCGYYILLSNMY---AEAGKWDEASKVRELMKSR 389
             +F   ++  +    YI + N+    +  G   E  ++ + MK R
Sbjct: 407 LAVFDEMIMGRETAPNYITIVNVLTACSRGGLTKEGYELFQTMKQR 452



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 102/216 (47%), Gaps = 12/216 (5%)

Query: 75  RPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDE----VSYNIL 129
           R G+  HAR +R        F+   L ++Y+K   L+L          D     VSY   
Sbjct: 30  RLGRAAHARALRLLAPALPPFICAHLVNLYSK---LDLPGAAAAALAADPSPTVVSYTAF 86

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA---AIKQGKEIHGVTIR 186
           I G +Q +   ++LS F+ M  LG++ +  +F  A  A A+     A   G ++H + +R
Sbjct: 87  ISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRCAAAVGPQVHALALR 146

Query: 187 -KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
             +L    FV+ + LD Y ++GR+ LA ++FD +P ++  +WN ++    + G     + 
Sbjct: 147 FGYLPDDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPIETVE 206

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
            +  +R  G   + VS  A   AC+    +  G+++
Sbjct: 207 AYFGLRGAGGMPNVVSVCAFFNACAGMTCLSLGEQF 242


>gi|334186513|ref|NP_193153.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635637|sp|Q5XEY7.2|PP309_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14170
 gi|332657989|gb|AEE83389.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 477

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 143/393 (36%), Positives = 228/393 (58%), Gaps = 3/393 (0%)

Query: 8   PAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLP 66
           P   S  +H +  +NI SWN ++  F+++    K++ L   M   +   P+  TL  +L 
Sbjct: 84  PTSLSVFWH-MPYRNIFSWNIIIGEFSRSGFASKSIDLFLRMWRESCVRPDDFTLPLILR 142

Query: 67  ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVS 125
           AC+     + G  IH   ++ G +  LF+++AL  MY   G L  A+ +F+ +  RD V 
Sbjct: 143 ACSASREAKSGDLIHVLCLKLGFSSSLFVSSALVIMYVDMGKLLHARKLFDDMPVRDSVL 202

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           Y  +  GY Q  +    L++F EM   G   D V  +  + AC  L A+K GK +HG  I
Sbjct: 203 YTAMFGGYVQQGEAMLGLAMFREMGYSGFALDSVVMVSLLMACGQLGALKHGKSVHGWCI 262

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
           R+     L + N+I D Y +   +D A+ +F  +  +D  SW++LILGYG+ G+V  +  
Sbjct: 263 RRCSCLGLNLGNAITDMYVKCSILDYAHTVFVNMSRRDVISWSSLILGYGLDGDVVMSFK 322

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           LF+ M ++G+  + V+++ +L+AC+HGGLVEK   YF  MQ  ++ P   HYA + D + 
Sbjct: 323 LFDEMLKEGIEPNAVTFLGVLSACAHGGLVEKSWLYFRLMQEYNIVPELKHYASVADCMS 382

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365
           RAGL+E+A K ++++PV+PD  + GA+L  C++YGNVE+G   A  L  LKP+   YY+ 
Sbjct: 383 RAGLLEEAEKFLEDMPVKPDEAVMGAVLSGCKVYGNVEVGERVARELIQLKPRKASYYVT 442

Query: 366 LSNMYAEAGKWDEASKVRELMKSREAKKNPGCS 398
           L+ +Y+ AG++DEA  +R+ MK ++  K PGCS
Sbjct: 443 LAGLYSAAGRFDEAESLRQWMKEKQISKVPGCS 475



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 2/245 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY    +   A  LF ++  ++ V + AM   + Q    +  L + REM       +SV 
Sbjct: 178 MYVDMGKLLHARKLFDDMPVRDSVLYTAMFGGYVQQGEAMLGLAMFREMGYSGFALDSVV 237

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + ++L AC +   L+ GK +H   IR+     L L NA+TDMY KC  L+ A  VF N+S
Sbjct: 238 MVSLLMACGQLGALKHGKSVHGWCIRRCSCLGLNLGNAITDMYVKCSILDYAHTVFVNMS 297

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S++ LI+GY    D   S  LF EM   G++ + V+F+G +SACA+   +++   
Sbjct: 298 RRDVISWSSLILGYGLDGDVVMSFKLFDEMLKEGIEPNAVTFLGVLSACAHGGLVEKSWL 357

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGMLG 238
              +    ++   L    S+ D  +R+G ++ A K  + +PVK D A    ++ G  + G
Sbjct: 358 YFRLMQEYNIVPELKHYASVADCMSRAGLLEEAEKFLEDMPVKPDEAVMGAVLSGCKVYG 417

Query: 239 EVDTA 243
            V+  
Sbjct: 418 NVEVG 422


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 143/431 (33%), Positives = 243/431 (56%), Gaps = 15/431 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+A       A  +F     +++VSWN ++  + +     KA+++ + M      P+ VT
Sbjct: 125 MFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVT 184

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
           +  ++ +CA    L  GKE +  +   GL   + L NAL DM++KCG ++ A+ +F+   
Sbjct: 185 MIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLE 244

Query: 118 -----------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS 166
                      +  +D V +N +I G  Q     ++L+LF EM+      D ++ +  +S
Sbjct: 245 KRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLS 304

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
           AC+ L A+  G  IH    +  L  ++ +  S++D Y + G I  A  +F  +  ++S +
Sbjct: 305 ACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLT 364

Query: 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
           +  +I G  + G+  TAI+ F  M + G+  D +++I +L+AC HGG+++ G+ YF +M+
Sbjct: 365 YTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMK 424

Query: 287 AD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
           +  ++ P   HY+ MVDLLGRAGL+E+A KL++++P+E DA +WGALL  CR++GNV+LG
Sbjct: 425 SRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPMEADAAVWGALLFGCRMHGNVKLG 484

Query: 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDE 405
             AA+ L  L P   G Y+LL  MY EA  W++A + R +M  R  +K PGCS ++    
Sbjct: 485 EKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGI 544

Query: 406 VQDFVVNDRMK 416
           V +F+V D+ +
Sbjct: 545 VSEFIVRDKSR 555



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 177/428 (41%), Gaps = 57/428 (13%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKAL----QLVREMPIHNEFPNSVTLTNVLPACA 69
           +   I   N  SWN  +  F+++     A+    Q++R     +  P+  T   +   CA
Sbjct: 34  ILKGIENPNAFSWNVTIRGFSESENPKDAVLAYKQMLRRGCCESR-PDHFTYPVLFKVCA 92

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNI 128
                  G  I   + +  L     + NA   M+A CG +  A+ VF+ S  RD VS+N 
Sbjct: 93  DLRLNSLGHMILGHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNC 152

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           LI GY +  +  +++ ++  M   G+K D V+ +G +S+CA L  + +GKE +       
Sbjct: 153 LINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANG 212

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-------------KDSASWNTLILGYG 235
           L   + +AN+++D +++ G I  A +IFD L               KD   WN +I G  
Sbjct: 213 LRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSV 272

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
                  A+ LF+ M+      D ++ I  L+ACS  G ++ G      ++  S+     
Sbjct: 273 QAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVA 332

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLP---------------------------------- 321
               +VD+  + G + +A+ +   +                                   
Sbjct: 333 LGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAG 392

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHL---FMLKPQHCGYYILLSNMYAEAGKWDE 378
           + PD   +  LL AC   G ++ G      +   F L PQ   +Y ++ ++   AG  +E
Sbjct: 393 IAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQ-LKHYSIMVDLLGRAGLLEE 451

Query: 379 ASKVRELM 386
           A K+ E M
Sbjct: 452 ADKLMESM 459


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 156/447 (34%), Positives = 247/447 (55%), Gaps = 34/447 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK     EA  +F ++ ++N VSW  ++  F Q     ++++L  +M       +   
Sbjct: 335 LYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFA 394

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  ++  C     +  G ++H+  ++ G    + ++N+L  MYAKCG L  A+ +FN ++
Sbjct: 395 LATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMA 454

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMR---------LLG--MKH------------ 156
            RD VS+  +I  YSQ  + +++   F +M          +LG  ++H            
Sbjct: 455 ERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSD 514

Query: 157 ---------DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
                    D V+++     CA++ A K G +I G T++  L     V N+++  Y++ G
Sbjct: 515 MLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCG 574

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
           RI  A K FD L  KD  SWN +I GY   G    AI +F+ +   G   D +SY+A+L+
Sbjct: 575 RISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLS 634

Query: 268 ACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
            CSH GLVE+GK YFD M+ D ++ P   H++CMVDLLGRAG + +A  LI  +P++P A
Sbjct: 635 GCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTA 694

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
            +WGALL AC+ +GN +L   AA+HLF L     G Y+LL+ MYA+AGK D++++VR+LM
Sbjct: 695 EVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLM 754

Query: 387 KSREAKKNPGCSWVQTRDEVQDFVVND 413
           + +  KK+PG SW++  + V  F   D
Sbjct: 755 RDKGIKKSPGYSWMEVNNRVHVFKAED 781



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 158/301 (52%), Gaps = 6/301 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAKS     A  +F ++ E+++VSWN +++  +++    +AL +V +M      P+S T 
Sbjct: 235 YAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTY 294

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
           T+ L ACAR   L  GK++H ++IR   + D ++ +A+ ++YAKCGC   A+ VF ++  
Sbjct: 295 TSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRD 354

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+ +LI G+ Q    SES+ LF++MR   M  D  +    IS C N   I  G ++
Sbjct: 355 RNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQL 414

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H + ++      + V+NS++  Y + G +  A  IF+ +  +D  SW  +I  Y  +G +
Sbjct: 415 HSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNI 474

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG-KKYFDEMQADSVKPTEMHYAC 299
             A   F+ M    V    +++ A+L A    G  E G K Y D +    V P  + Y  
Sbjct: 475 AKAREFFDDMSTRNV----ITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVT 530

Query: 300 M 300
           +
Sbjct: 531 L 531



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 165/374 (44%), Gaps = 34/374 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSVT 60
           YAK    ++A  LF  +  +++ SWN +++ + Q+   L AL +   M    +  PN+ T
Sbjct: 102 YAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFT 161

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
              V+ +C    +     ++   + +     D  +  AL DM  +CG ++ A   F+   
Sbjct: 162 FGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIK 221

Query: 118 -----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                        +  RD VS+N++I   S++    E+L +  +
Sbjct: 222 NPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVD 281

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M   G++ D  ++  +++ACA L++++ GK++H   IR   H   +VA+++++ Y + G 
Sbjct: 282 MHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGC 341

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
              A ++F  L  ++S SW  LI G+   G    ++ LF  MR + +  D  +   +++ 
Sbjct: 342 FKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISG 401

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           C +   +  G +              +    ++ +  + G +++A +LI N   E D   
Sbjct: 402 CCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNA-ELIFNFMAERDIVS 460

Query: 329 WGALLGACRIYGNV 342
           W  ++ A    GN+
Sbjct: 461 WTGMITAYSQVGNI 474



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 125/303 (41%), Gaps = 43/303 (14%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---- 116
           L + L +C     L   + +H+R+I  GL   +FL N L   Y  CG L+ A+N+     
Sbjct: 28  LADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEI 87

Query: 117 -----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
                                         +  RD  S+N ++ GY Q+     +L +F 
Sbjct: 88  TEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFV 147

Query: 148 EMRLLGMK-HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
            MR  G    +  +F   + +C  L   +   ++ G+  +        V  +++D   R 
Sbjct: 148 SMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRC 207

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           G +D A+K F  +        N++++GY     VD A+ +F++M E     D VS+  ++
Sbjct: 208 GAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPE----RDVVSWNMVI 263

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA----VKLIKNLP- 321
           +A S  G V +      +M    V+P    Y   +    R   +E      V++I+NLP 
Sbjct: 264 SALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPH 323

Query: 322 VEP 324
           ++P
Sbjct: 324 IDP 326


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 151/418 (36%), Positives = 240/418 (57%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQ--NRLEL-KALQLVREMPIHNEFPN 57
           MYAK     EA  +F   A  ++V +NAM+  +++   + EL  AL +  +M      P+
Sbjct: 394 MYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPS 453

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
            +T  ++L A A    L   K+IH  + + GLN D+F  +AL  +Y+ C CL  ++ VF+
Sbjct: 454 LLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFD 513

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  +D V +N +  GY Q S+  E+L+LF E++L   + D  +F+  ++A  NLA+++ 
Sbjct: 514 EMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQL 573

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+E H   +++ L  + ++ N++LD Y + G  + A+K FD    +D   WN++I  Y  
Sbjct: 574 GQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYAN 633

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            GE   A+ + E M  +G+  + ++++ +L+ACSH GLVE G K F+ M    ++P   H
Sbjct: 634 HGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEH 693

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y CMV LLGRAG + +A +LI+ +P +P A +W +LL  C   GNVEL  +AAE   +  
Sbjct: 694 YVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEYAAEMAILSD 753

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           P+  G + LLSN+YA  G W +A KVRE MK     K PG SW++   EV  F+  D+
Sbjct: 754 PKDSGSFTLLSNIYASKGMWTDAKKVRERMKFEGVVKEPGRSWIEINKEVHIFLSKDK 811



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 212/430 (49%), Gaps = 41/430 (9%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K  R   A  LF  +  KNI+SW  +++ + QN L  +A++L   MP     P+    
Sbjct: 294 YVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFAC 353

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR 121
           +++L +CA  H L  G ++HA  I+  L  D ++TN+L DMYAKC CL  A+ VF+I   
Sbjct: 354 SSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAA 413

Query: 122 DEVS-YNILIVGYSQTS---DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           D+V  +N +I GYS+     +  ++L++F +MR   ++  +++F+  + A A+L ++   
Sbjct: 414 DDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLS 473

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K+IHG+  +  L+  +F  ++++  Y+    +  +  +FD + VKD   WN++  GY   
Sbjct: 474 KQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQ 533

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
            E + A+NLF  ++      D  +++ ++TA  +   ++ G+++  ++    ++      
Sbjct: 534 SENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYIT 593

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLP----------------------------------VE 323
             ++D+  + G  EDA K   +                                    +E
Sbjct: 594 NALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIE 653

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHL--FMLKPQHCGYYILLSNMYAEAGKWDEASK 381
           P+   +  +L AC   G VE G    E +  F ++P+   +Y+ + ++   AG+ +EA +
Sbjct: 654 PNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPE-TEHYVCMVSLLGRAGRLNEARE 712

Query: 382 VRELMKSREA 391
           + E M ++ A
Sbjct: 713 LIEKMPTKPA 722



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 142/286 (49%), Gaps = 8/286 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           +Y+++     A  +F  + E+N+V+W+ MV+    +    ++L +  +        PN  
Sbjct: 88  LYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEY 147

Query: 60  TLTNVLPACA----RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
            L++ + AC+     G ++    ++ + +++   + D+++   L D Y K G ++ A+ V
Sbjct: 148 ILSSFIQACSGLDGSGRWMV--FQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLV 205

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ +  +  V++  +I G  +      SL LF ++    +  D       +SAC+ L  +
Sbjct: 206 FDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFL 265

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           + GK+IH   +R        + N ++D Y + GR+  A+K+FD +P K+  SW TL+ GY
Sbjct: 266 EGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGY 325

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
                   A+ LF +M + G+  D  +  +ILT+C+    +E G +
Sbjct: 326 KQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQ 371



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 119/264 (45%), Gaps = 13/264 (4%)

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSD 138
           +H +II  GL  D +L+N L ++Y++ G +  A+ VF  +  R+ V+++ ++   +    
Sbjct: 66  VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGF 125

Query: 139 CSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGK----EIHGVTIRKHLHTHL 193
             ESL +F +  R      +       I AC+ L     G+    ++    ++      +
Sbjct: 126 YEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDG--SGRWMVFQLQSFLVKSRFDRDV 183

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
           +V   ++DFY + G ID A  +FD LP K + +W T+I G   +G    ++ LF  + E 
Sbjct: 184 YVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEG 243

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
            V  D      +L+ACS    +E GK+    +     +        ++D   + G +  A
Sbjct: 244 NVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAA 303

Query: 314 VKLIKNLPVEPDANI--WGALLGA 335
            KL   +   P+ NI  W  LL  
Sbjct: 304 HKLFDGM---PNKNIISWTTLLSG 324


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 155/417 (37%), Positives = 238/417 (57%), Gaps = 16/417 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+     EA  LF     +++ +W A+V+ +AQN +  +A ++   MP  N    +V+ 
Sbjct: 234 YARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERN----AVSW 289

Query: 62  TNVLPACARGHFLRPGKEIHARI-IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++ A  +   +   KE+   +  R   +++  LT      YA+ G L  A+ VF+ + 
Sbjct: 290 NAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTG-----YAQAGMLEEAKAVFDTMP 344

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+  ++  YSQ     E+L LF EM   G   +  +F   +S CA++AA++ G +
Sbjct: 345 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 404

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  IR       FV N++L  Y + G ++ A   F+ +  +D  SWNT+I GY   G 
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGF 464

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD---SVKPTEMH 296
              A+ +F+ MR      D ++ + +L ACSH GLVEKG  YF  M  D   + KP   H
Sbjct: 465 GKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPE--H 522

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y CM+DLLGRAG + +A  L+K++P EPD+ +WGALLGA RI+ N ELG  AAE +F L+
Sbjct: 523 YTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELE 582

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P++ G Y+LLSN+YA +GKW +A K+R +M+ R  KK PG SW++ +++V  F   D
Sbjct: 583 PENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGD 639



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 157/339 (46%), Gaps = 36/339 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+ + R   A+ LF  I   +  S+N ++   A +     A  L  EMP+ +    +V +
Sbjct: 79  YSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMI 138

Query: 62  TN----VLPACARGHF-LRPGKE------IHARIIRKG------------LNFDLFLTNA 98
           ++     L + AR +F L P K+      + A  +R G              +D+   NA
Sbjct: 139 SSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNA 198

Query: 99  LTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157
           L   Y + G ++ A+ +F+ +  RD VS+NI++ GY++  D  E+  LF    +     D
Sbjct: 199 LMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPV----RD 254

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
           V ++   +S  A    +++ + +      ++  +     N+++  Y +   +D A ++F+
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSW----NAMVAAYIQRRMMDEAKELFN 310

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            +P ++ ASWNT++ GY   G ++ A  +F+ M +     D VS+ A+L A S GG  E+
Sbjct: 311 MMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEE 366

Query: 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
             + F EM           +AC++        +E  ++L
Sbjct: 367 TLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQL 405



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 163/364 (44%), Gaps = 84/364 (23%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN-RLELKALQLVREMPIHNEFPNSVT 60
           + ++ R A+A  LF  +  ++  ++NAM+A ++ N RL L A  L R +P     P++ +
Sbjct: 48  HMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAA-SLFRAIP----RPDNYS 102

Query: 61  LTNVLPACARGHFLRPGKEIHARI-IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
              +L A A    L   + +   + +R  + +++ +++     +A  G ++LA++ F+++
Sbjct: 103 YNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISS-----HANHGLVSLARHYFDLA 157

Query: 120 -FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D VS+N ++  Y +     E+  LF+       + DV+S+                 
Sbjct: 158 PEKDAVSWNGMLAAYVRNGRVEEARGLFNSR----TEWDVISW----------------- 196

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
                             N+++  Y + G++  A ++FD +P +D  SWN ++ GY   G
Sbjct: 197 ------------------NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRG 238

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEM-- 295
           ++  A  LF+A        D  ++ A+++  +  G++E+ ++ FD M + ++V    M  
Sbjct: 239 DMVEARRLFDA----APVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVA 294

Query: 296 ------------------------HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
                                    +  M+    +AG++E+A  +   +P + DA  W A
Sbjct: 295 AYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAA 353

Query: 332 LLGA 335
           +L A
Sbjct: 354 MLAA 357



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 140/335 (41%), Gaps = 52/335 (15%)

Query: 89  LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ------------ 135
           L  ++  +N     + + G +  A+ +F  +  R   +YN ++ GYS             
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 136 -------------------TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
                              +S  +++  LF EM +     D V++   IS+ AN   +  
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPV----RDSVTYNVMISSHANHGLVSL 149

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            +    +   K   +     N +L  Y R+GR++ A  +F+     D  SWN L+ GY  
Sbjct: 150 ARHYFDLAPEKDAVSW----NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQ 205

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G++  A  LF+ M     G D VS+  +++  +  G + + ++ FD      V      
Sbjct: 206 WGKMSEARELFDRM----PGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FT 257

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           +  +V    + G++E+A ++   +P E +A  W A++ A   Y    +   A E   M+ 
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNAMVAA---YIQRRMMDEAKELFNMMP 313

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
            ++   +  +   YA+AG  +EA  V + M  ++A
Sbjct: 314 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDA 348



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A   F  + E+++VSWN M+A +A++    +AL++   M   +  P+ +T
Sbjct: 427 MYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDIT 486

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF 91
           L  VL AC+           H+ ++ KG+++
Sbjct: 487 LVGVLAACS-----------HSGLVEKGISY 506


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 141/416 (33%), Positives = 243/416 (58%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K  +  +   LF  I + +++S+NAM++ +  N     A+ L RE+    +  NS T
Sbjct: 258 LYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSST 317

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L  ++P     + L+  + I    ++ G+     ++ ALT +Y +   +  A+ +F+ S 
Sbjct: 318 LVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESP 377

Query: 121 RDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
              + S+N +I GY+Q      ++SLF EM +  +  + V+    +SACA L A+  GK 
Sbjct: 378 EKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSIGKW 436

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+   + L ++++V+ +++D Y + G I  A ++FD +  K+  +WN +I GYG+ G 
Sbjct: 437 VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGH 496

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LF  M + G+    V++++IL ACSH GLV +G + F  M  +   +P   HYA
Sbjct: 497 GKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYA 556

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGRAG + +A++ I+ +P+EP   +WGALLGAC I+ N E+   A++ LF L P+
Sbjct: 557 CMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPE 616

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + GYY+LLSN+Y+    + +A+ VR+++K R+  K PGC+ ++  D+   F   DR
Sbjct: 617 NVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDR 672



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 171/342 (50%), Gaps = 3/342 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K +R   A  +F  + E++ V WN M++ F++N     ++++  +M       +S T
Sbjct: 157 LYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTT 216

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL A A     R G  I     +KGL+ D+++   L  +Y+KCG     + +F+ I 
Sbjct: 217 LATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQID 276

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D +SYN +I GY+   +   +++LF E+   G + +  + +G I        ++  + 
Sbjct: 277 QPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRL 336

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I  ++++  +     V+ ++   Y R   +  A ++FD  P K  ASWN +I GY   G 
Sbjct: 337 IQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGL 396

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D AI+LF+ M    +  +PV+  +IL+AC+  G +  GK     ++++ ++        
Sbjct: 397 TDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTA 455

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           +VD+  + G + +A +L  +L V+ +   W A++    ++G+
Sbjct: 456 LVDMYAKCGSIVEARQLF-DLMVDKNVVTWNAMITGYGLHGH 496



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 184/419 (43%), Gaps = 46/419 (10%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSVTLTNVLPA 67
           A    LF+ +++ ++  +N ++  F+ N L   ++ L   +    N  P++ T    + A
Sbjct: 63  AHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISA 122

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRDEVSY 126
            +R    R G  +HA  I  G+  +LF+ +A+ D+Y K     LA+ VF++   RD V +
Sbjct: 123 ASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLW 182

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           N +I G+S+ S   +S+ +F +M  +G+  D  +    ++A A L   + G  I  +  +
Sbjct: 183 NTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASK 242

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
           K LH+ ++V   ++  Y++ G+      +FD +   D  S+N +I GY    E ++A+ L
Sbjct: 243 KGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTL 302

Query: 247 FEAMREDG--------VGYDPVSY---------------------------IAILTACSH 271
           F  +   G        VG  PV                              A+ T    
Sbjct: 303 FRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCR 362

Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDANIW 329
              V+  ++ FDE    S+      +  M+    + GL + A+ L + +   + P+    
Sbjct: 363 LNEVQFARQLFDESPEKSLAS----WNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTV 418

Query: 330 GALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWDEASKVRELM 386
            ++L AC   G + +G W    L   +      Y+   L +MYA+ G   EA ++ +LM
Sbjct: 419 TSILSACAQLGALSIGKW-VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM 476



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 106/194 (54%), Gaps = 2/194 (1%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
           +I A++I  G+++DL     LT  +   G +   + +FN +S  D   +N+LI G+S   
Sbjct: 32  QIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNG 91

Query: 138 DCSESLSLFSEMRL-LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               S+ L++ +R    ++ D  ++  AISA + L   + G  +H  +I   + ++LFV 
Sbjct: 92  LPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVG 151

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           ++I+D Y +  R +LA K+FD +P +D+  WNT+I G+      + +I +F  M + G+ 
Sbjct: 152 SAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLS 211

Query: 257 YDPVSYIAILTACS 270
           +D  +   +LTA +
Sbjct: 212 FDSTTLATVLTAVA 225


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/407 (34%), Positives = 240/407 (58%), Gaps = 4/407 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE--FPNSVTLTNVLPAC 68
           A  LF  + E+++VSWN++++ ++      K  +++  M I      PN VT  +++ AC
Sbjct: 85  AEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISAC 144

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYN 127
             G     G+ IH  +++ G+  ++ + NA  + Y K G L  +  +F ++S ++ VS+N
Sbjct: 145 VYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWN 204

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            +IV + Q     + L+ F+  R +G + D  +F+  + +C ++  ++  + IHG+ +  
Sbjct: 205 TMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFG 264

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
               +  +  ++LD Y++ GR++ ++ +F  +   DS +W  ++  Y   G    AI  F
Sbjct: 265 GFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHF 324

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGR 306
           E M   G+  D V++  +L ACSH GLVE+GK YF+ M     + P   HY+CMVDLLGR
Sbjct: 325 ELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGR 384

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366
           +GL++DA  LIK +P+EP + +WGALLGACR+Y + +LG  AAE LF L+P+    Y++L
Sbjct: 385 SGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVML 444

Query: 367 SNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           SN+Y+ +G W +AS++R LMK +   +  GCS+++  +++  FVV D
Sbjct: 445 SNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGD 491



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 84/169 (49%), Gaps = 5/169 (2%)

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
           +V S + A+ +C    +I+  + +H   ++   + H F+ + ++  Y R G    A K+F
Sbjct: 33  NVSSLIAAVKSCV---SIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLF 89

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGL 274
           D +P +D  SWN+LI GY   G +     +   M    VG+ P  V+++++++AC +GG 
Sbjct: 90  DEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGS 149

Query: 275 VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
            E+G+     +    V          ++  G+ G +  + KL ++L ++
Sbjct: 150 KEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIK 198



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K  R  ++S +FH I   + ++W AM+A +A +     A++    M  +   P+ VT
Sbjct: 279 LYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVT 338

Query: 61  LTNVLPACARGHFLRPGK---EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
            T++L AC+    +  GK   E  ++  R     D +  + + D+  + G L  A
Sbjct: 339 FTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHY--SCMVDLLGRSGLLQDA 391


>gi|242067895|ref|XP_002449224.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
 gi|241935067|gb|EES08212.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
          Length = 570

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 144/404 (35%), Positives = 226/404 (55%), Gaps = 4/404 (0%)

Query: 1   MYAKSSRPAEASYLF--HNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY +    A+A  +F   + + + +VSW AMVA + QN    +AL L   M      PN 
Sbjct: 165 MYFQEGEVADAELVFAESHGSSRTVVSWTAMVAGYVQNYFFGEALALFSTMVAEGVLPNE 224

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
           +TL + LP      +L  G+ +H  +IR G + ++ L NAL  MY KCG + +A+ +F  
Sbjct: 225 ITLISFLPCLQGQEWLDAGEMVHGFVIRSGFDANIPLANALIAMYGKCGSIPMAEALFEG 284

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           ++ R  VS+N ++  Y Q  D  E++  F  M    +  D V+ +  +SAC    A++ G
Sbjct: 285 MAVRSLVSWNTMVAIYEQHGDVVEAIKFFHRMLTEKVGFDCVTLVSVLSACGRSGALETG 344

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K +H       L     + N ++D Y + G I  A K+FDCL V+   SW+ +I  Y   
Sbjct: 345 KWVHEFARSHGLDADARIGNVLVDMYAKCGEIADARKVFDCLHVRGVVSWSAMISAYANH 404

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G+ + A+ LF  M+ +GV  +  ++ A+L AC H GLV +G K+F+ + +D  + PT  H
Sbjct: 405 GDSEEALKLFCLMKSEGVRPNSFTFTAVLVACGHSGLVNEGLKHFNSILSDYQMSPTLEH 464

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YAC+VD+LGRAG + +A ++I+ + + PD  +WGA LG C+++ N+EL  + A+ LF   
Sbjct: 465 YACIVDMLGRAGRLVEAYEIIRGMSLCPDKCVWGAFLGGCKLHSNLELAEFVAKDLFQSG 524

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
                +Y+L+SNMY EAG  ++A ++R  MK  E KK  G S V
Sbjct: 525 SNDVTFYVLMSNMYFEAGMLEDAERIRRAMKEMELKKTAGHSAV 568



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 4/307 (1%)

Query: 40  LKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99
           + AL L + M      P+  T   VLPACA     R G+ +H   +R  L+ D F+   L
Sbjct: 103 VDALALYKRMRAAGVAPDHYTYPIVLPACAAARQPRLGRAVHGDAVRFALDGDGFVRCTL 162

Query: 100 TDMYAKCGCLNLAQNVF---NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH 156
             MY + G +  A+ VF   + S R  VS+  ++ GY Q     E+L+LFS M   G+  
Sbjct: 163 IAMYFQEGEVADAELVFAESHGSSRTVVSWTAMVAGYVQNYFFGEALALFSTMVAEGVLP 222

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
           + ++ +  +        +  G+ +HG  IR     ++ +AN+++  Y + G I +A  +F
Sbjct: 223 NEITLISFLPCLQGQEWLDAGEMVHGFVIRSGFDANIPLANALIAMYGKCGSIPMAEALF 282

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
           + + V+   SWNT++  Y   G+V  AI  F  M  + VG+D V+ +++L+AC   G +E
Sbjct: 283 EGMAVRSLVSWNTMVAIYEQHGDVVEAIKFFHRMLTEKVGFDCVTLVSVLSACGRSGALE 342

Query: 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
            GK   +  ++  +         +VD+  + G + DA K+   L V    + W A++ A 
Sbjct: 343 TGKWVHEFARSHGLDADARIGNVLVDMYAKCGEIADARKVFDCLHVRGVVS-WSAMISAY 401

Query: 337 RIYGNVE 343
             +G+ E
Sbjct: 402 ANHGDSE 408



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 144/368 (39%), Gaps = 59/368 (16%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNILI-- 130
           LR    IHAR I  G++ +L    +L    A    L  A+ VF+ +  RD   +N L+  
Sbjct: 29  LRALLPIHARAIVLGVSANLAFATSLIAGAAPAS-LAYARRVFDAAPVRDAYMWNTLLRA 87

Query: 131 ------VGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
                    S  S   ++L+L+  MR  G+  D  ++   + ACA     + G+ +HG  
Sbjct: 88  HAHSHSHSQSSHSHAVDALALYKRMRAAGVAPDHYTYPIVLPACAAARQPRLGRAVHGDA 147

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIF--DCLPVKDSASWNTLILGYGMLGEVDT 242
           +R  L    FV  +++  Y + G +  A  +F       +   SW  ++ GY        
Sbjct: 148 VRFALDGDGFVRCTLIAMYFQEGEVADAELVFAESHGSSRTVVSWTAMVAGYVQNYFFGE 207

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG------------- 278
           A+ LF  M  +GV  + ++ I+ L               HG ++  G             
Sbjct: 208 ALALFSTMVAEGVLPNEITLISFLPCLQGQEWLDAGEMVHGFVIRSGFDANIPLANALIA 267

Query: 279 -----------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP--- 324
                      +  F+ M   S+    + +  MV +  + G + +A+K    +  E    
Sbjct: 268 MYGKCGSIPMAEALFEGMAVRSL----VSWNTMVAIYEQHGDVVEAIKFFHRMLTEKVGF 323

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLF---MLKPQHCGYYILLSNMYAEAGKWDEASK 381
           D     ++L AC   G +E G W  E      +      G   +L +MYA+ G+  +A K
Sbjct: 324 DCVTLVSVLSACGRSGALETGKWVHEFARSHGLDADARIGN--VLVDMYAKCGEIADARK 381

Query: 382 VRELMKSR 389
           V + +  R
Sbjct: 382 VFDCLHVR 389


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 243/418 (58%), Gaps = 12/418 (2%)

Query: 2   YAKSSRPAEASYLF---HNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           Y+K S   +A  LF   H +  +N+VSW A+++ + QN    +A+ L  +M      PN 
Sbjct: 339 YSKCSEIDDAFKLFCMMHGV--QNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNH 396

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            T + +L A A    + P  +IHA +++        +  AL+D Y+K G  N A  +F  
Sbjct: 397 FTYSTILTANAA---VSPS-QIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFEL 452

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN-LAAIKQ 176
           I  +D V+++ ++ GY+Q  D   ++ +F ++   G++ +  +F   ++ACA   A+++Q
Sbjct: 453 IDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQ 512

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK+ H  +I+      L V+++++  Y + G I+ AN++F     +D  SWN++I GY  
Sbjct: 513 GKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQ 572

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G    ++ +FE MR   +  D +++I +++AC+H GLV +G++YFD M  D  + PT  
Sbjct: 573 HGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTME 632

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY+CMVDL  RAG++E A+ LI  +P    A IW  LL ACR++ NV+LG  AAE L  L
Sbjct: 633 HYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISL 692

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +PQ    Y+LLSN+YA AG W E +KVR+LM  ++ KK  G SW++ +++   F+  D
Sbjct: 693 QPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGD 750



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 171/360 (47%), Gaps = 37/360 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+    +   +F  +  KN+VSW +++A + QN L  +AL+L  +M +    PN  T
Sbjct: 136 MYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFT 195

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              VL   A    +  G ++H  +I+ GL+  +F+ N++ +MY+K   ++ A+ VF+ + 
Sbjct: 196 FAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSME 255

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+N +I G+       E+  LF  MRL G+K     F   I  CAN+  +   K+
Sbjct: 256 NRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQ 315

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL--PVKDSASWNTLILGYGML 237
           +H   I+      L +  +++  Y++   ID A K+F C+   V++  SW  +I GY   
Sbjct: 316 LHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLF-CMMHGVQNVVSWTAIISGYVQN 374

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G  D A+NLF  MR +GV  +  +Y  ILTA +                  +V P+++H 
Sbjct: 375 GRTDRAMNLFCQMRREGVRPNHFTYSTILTANA------------------AVSPSQIHA 416

Query: 298 --------------ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
                           + D   + G   +A K+ + L  E D   W A+L      G++E
Sbjct: 417 LVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFE-LIDEKDIVAWSAMLSGYAQMGDIE 475



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 181/347 (52%), Gaps = 16/347 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+KS   ++A  +F ++  +N VSWN+M+A F  N L+L+A +L   M +         
Sbjct: 237 MYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTI 296

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-- 118
              V+  CA    +   K++H ++I+ G +FDL +  AL   Y+KC  ++ A  +F +  
Sbjct: 297 FATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMH 356

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             ++ VS+  +I GY Q      +++LF +MR  G++ +  ++   ++A A ++      
Sbjct: 357 GVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP----S 412

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH + ++ +      V  ++ D Y++ G  + A KIF+ +  KD  +W+ ++ GY  +G
Sbjct: 413 QIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMG 472

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSH-GGLVEKGKKYFDEMQADSVKPTEMHY 297
           +++ A+ +F  + ++GV  +  ++ ++L AC+     VE+GK++     + S+K    + 
Sbjct: 473 DIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQF----HSCSIKSGFSNA 528

Query: 298 AC----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
            C    +V +  + G +E A ++ K   V+ D   W +++     +G
Sbjct: 529 LCVSSALVTMYAKRGNIESANEVFKR-QVDRDLVSWNSMISGYAQHG 574



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 133/259 (51%), Gaps = 1/259 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           LF    ++ +   N ++  F++N    +AL L   +       +  +L+ VL  C     
Sbjct: 48  LFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFD 107

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
              GK++H + I+ G   D+ +  +L DMY K   +   + VF+ +  ++ VS+  L+ G
Sbjct: 108 RIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAG 167

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y Q     ++L LFS+M+L G+K +  +F   +   A   A+++G ++H + I+  L + 
Sbjct: 168 YRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDST 227

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           +FV NS+++ Y++S  +  A  +FD +  +++ SWN++I G+   G    A  LF  MR 
Sbjct: 228 IFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRL 287

Query: 253 DGVGYDPVSYIAILTACSH 271
           +GV      +  ++  C++
Sbjct: 288 EGVKLTQTIFATVIKLCAN 306



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 109/225 (48%), Gaps = 2/225 (0%)

Query: 112 AQNVFNISFRDEVSYNI-LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170
           +Q +F+ + +  +S N  L+  +S+     E+L+LF  +R  G   D  S    +  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           L     GK++H   I+      + V  S++D Y ++  ++   ++FD + VK+  SW +L
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           + GY   G  + A+ LF  M+ +G+  +P ++ A+L   +  G VEKG +    +    +
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
             T      MV++  ++ ++ DA  +  ++    +A  W +++  
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAG 268



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A+ +F    ++++VSWN+M++ +AQ+    K+L++  EM   N   + +T
Sbjct: 538 MYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGIT 597

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLT----NALTDMYAKCGCLNLAQNVF 116
              V+ AC     +  G+     +++   ++ +  T    + + D+Y++ G L  A ++ 
Sbjct: 598 FIGVISACTHAGLVNEGQRYFDLMVK---DYHIVPTMEHYSCMVDLYSRAGMLEKAMDLI 654

Query: 117 N 117
           N
Sbjct: 655 N 655


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 155/429 (36%), Positives = 252/429 (58%), Gaps = 21/429 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE------ 54
           MY+   +  +A  +F  I +++IVSW +M+  +  N   L A+ L +++ +         
Sbjct: 120 MYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAM 179

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG--CLNLA 112
           F +S+ L +V+ AC+R       + IH+ +I++G +  + + N L D YAK G   + +A
Sbjct: 180 FLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVA 239

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS----- 166
           + +F+ I  +D VSYN ++  Y+Q+   +E+  +F  +    +K+ VV+F  AI+     
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL----VKNKVVTF-NAITLSTVL 294

Query: 167 -ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
            A ++  A++ GK IH   IR  L   + V  SI+D Y + GR++ A K FD +  K+  
Sbjct: 295 LAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVR 354

Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           SW  +I GYGM G    A+ LF AM + GV  + ++++++L ACSH GL  +G ++F+ M
Sbjct: 355 SWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAM 414

Query: 286 QAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344
           +    V+P   HY CMVDLLGRAG ++ A  LI+ + ++PD+ IW +LL ACRI+ NVEL
Sbjct: 415 KGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVEL 474

Query: 345 GAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRD 404
              +   LF L   +CGYY+LLS++YA+AG+W +  +VR +MK+R   K PG S ++   
Sbjct: 475 AEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNG 534

Query: 405 EVQDFVVND 413
           EV  F++ D
Sbjct: 535 EVHVFLIGD 543



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 187/392 (47%), Gaps = 27/392 (6%)

Query: 14  LFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGH 72
           LF+   +K ++ SWN+++A+ A++    +AL     M   + +P   +    + AC+   
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 73  FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
            +  GK+ H +    G   D+F+++AL  MY+ CG L  A+ VF+ I  RD VS+  +I 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIR 150

Query: 132 GYSQTSDCSESLSLFSEMRL------LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           GY    +  +++SLF ++ +        M  D +  +  ISAC+ + A    + IH   I
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVI 210

Query: 186 RKHLHTHLFVANSILDFYTRSGR--IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
           ++     + V N++LD Y + G   + +A KIFD +  KD  S+N+++  Y   G  + A
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270

Query: 244 INLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
             +F  + +   V ++ ++   +L A SH G +  GK   D++    ++   +    ++D
Sbjct: 271 FEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIID 330

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF------MLK 356
           +  + G +E A K    +    +   W A++    ++G+    A  A  LF       ++
Sbjct: 331 MYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMHGH----AAKALELFPAMIDSGVR 385

Query: 357 PQHCGYYILL-----SNMYAEAGKWDEASKVR 383
           P +  +  +L     + ++ E  +W  A K R
Sbjct: 386 PNYITFVSVLAACSHAGLHVEGWRWFNAMKGR 417


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 160/447 (35%), Positives = 243/447 (54%), Gaps = 38/447 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A   F  + E+++VSWNAM + +AQ     +AL L  +M      P+  T 
Sbjct: 202 YAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTW 261

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----- 116
              + +C+          I   I +K +  + F+  AL DM+AK G L +A+N+F     
Sbjct: 262 VVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGS 321

Query: 117 ----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                       N+  RD VS+N +I GY+Q  + + S+ LF E
Sbjct: 322 QRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKE 381

Query: 149 M-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           M   + ++ D V+    +SAC ++ A+K    +  +   K++   +   NS++  Y++ G
Sbjct: 382 MISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCG 441

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
            +  A++IF  +  +D  S+NTLI G+   G    AI L   M E+G+  D V+YI +LT
Sbjct: 442 SVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLT 501

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           ACSH GL+ +GK  F  +QA    PT  HYACMVDLLGRAG +++A  LI+++P++P A 
Sbjct: 502 ACSHAGLLNEGKNVFKSIQA----PTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAG 557

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           ++G+LL A RI+  V LG  AA  LF L+PQ+ G Y+LLSN+YA  G+W++  +VRE+MK
Sbjct: 558 VYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMK 617

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVNDR 414
               KK+ G SWV+ + +V  F V DR
Sbjct: 618 KGGLKKSVGMSWVEYKGQVHKFTVGDR 644



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 154/354 (43%), Gaps = 73/354 (20%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+ +   A  LF  +AE+ +  WN+M++   ++  E +A+ L   MP      N +T
Sbjct: 139 MYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPAR----NIIT 194

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T+++                                     YAK G L  A+  F+ + 
Sbjct: 195 WTSMVTG-----------------------------------YAKMGDLESARRYFDEMP 219

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS+N +   Y+Q     E+L+LF +M   G+  D  +++  IS+C+++        
Sbjct: 220 ERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADS 279

Query: 180 IHGVTIRKHLHTHLFVANSILDF--------------------------------YTRSG 207
           I  +  +KH+  + FV  ++LD                                 YTR G
Sbjct: 280 ILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVG 339

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE-DGVGYDPVSYIAIL 266
           ++ LA ++FD +P +D  SWN++I GY   GE   +I LF+ M     +  D V+  ++L
Sbjct: 340 KLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVL 399

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           +AC H G ++      D ++  ++K     +  ++ +  + G + DA ++ + +
Sbjct: 400 SACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTM 453



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 21/242 (8%)

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           D   Y+ ++  YS+    ++ +SLF     L ++     ++  I       A K G   H
Sbjct: 64  DASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKL-----AGKSGNMFH 118

Query: 182 GVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
              ++  H+  H F+ N+ILD Y ++G++DLA  +F+ +  +  A WN++I G    G  
Sbjct: 119 AYVLKLGHIDDH-FIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNE 177

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A+ LF  M    +    +++ +++T  +  G +E  ++YFDEM   SV    + +  M
Sbjct: 178 TEAVVLFNMMPARNI----ITWTSMVTGYAKMGDLESARRYFDEMPERSV----VSWNAM 229

Query: 301 VDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
                +    ++A+ L   +    + PD   W   + +C   G+  L   A   L M+  
Sbjct: 230 QSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTL---ADSILRMIDQ 286

Query: 358 QH 359
           +H
Sbjct: 287 KH 288



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K    A+A  +F  +  +++VS+N +++ FA N    +A++LV  M      P+ VT
Sbjct: 436 MYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVT 495

Query: 61  LTNVLPACARGHFLRPGKEIHARI 84
              VL AC+    L  GK +   I
Sbjct: 496 YIGVLTACSHAGLLNEGKNVFKSI 519


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 151/419 (36%), Positives = 239/419 (57%), Gaps = 13/419 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M A+  R  EA  LF  + E++++SW AM+A  ++N    +A  L   MP  N     V+
Sbjct: 186 MLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERN----VVS 241

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              ++   A+   L    ++  R+  +    DL   N +     + G L  A+ +FN + 
Sbjct: 242 WNAMITGYAQNLRLDEALDLFERMPER----DLPSWNTMITGLIQNGDLRRARKLFNEMP 297

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGK 178
            ++ +S+  +I G  Q  +  E+L +FS M    G K +  +F+  + AC+NLA + +G+
Sbjct: 298 KKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQ 357

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD--CLPVKDSASWNTLILGYGM 236
           ++H +  +       FV +++++ Y++ G +  A K+FD      +D  SWN +I  Y  
Sbjct: 358 QVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAH 417

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G    AIN F+ MR+ G   D V+Y+ +L+ACSH GLVE+G KYFDE+  D S+   E 
Sbjct: 418 HGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVRED 477

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYAC+VDL GRAG +++A   I+ L  +P A +WGALL  C ++ NV++G  AA+ L  +
Sbjct: 478 HYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEV 537

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +P++ G Y+LLSN+YA  GKW EA++VR  MK +  KK PGCSW++  + V  FVV D+
Sbjct: 538 EPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDK 596



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 16/207 (7%)

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           N +I   S+     E+  LF EMR    + DV+++   IS       I++ + +     R
Sbjct: 56  NWMITNLSKDGRIMEARRLFDEMR----EPDVITWTTVISGYIKCGMIEEARRLFD---R 108

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
                ++    +++  Y RS +I  A K+F+ +P K+  SWNT+I GY   G +D+A+ L
Sbjct: 109 VDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYL 168

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306
           FE M E  V    VS+  +++  +  G +E+ ++ FD M    V    + +  M+  L +
Sbjct: 169 FEKMPERNV----VSWNTVMSMLAQCGRIEEARRLFDRMPERDV----ISWTAMIAGLSK 220

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALL 333
            G +++A  L   +P E +   W A++
Sbjct: 221 NGRIDEARLLFDRMP-ERNVVSWNAMI 246


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 147/448 (32%), Positives = 245/448 (54%), Gaps = 34/448 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A  LF  + EK++VSWN +V  +A+     +A+ L R+    +   N+ + 
Sbjct: 139 YAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSF 198

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---- 117
             VL  C +   L+  K++H +++  G   +L L++++ D Y+KCG +  A+ +F+    
Sbjct: 199 AGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLV 258

Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                       +  ++ VS++ LI GY++ S   E+L  F++M
Sbjct: 259 KDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKM 318

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
              G+  +  +F   + ACA++AA+K GK++HG  IR +   +  V +S++D Y++ G +
Sbjct: 319 MKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGML 378

Query: 210 DLANKIFDCLPVK-DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           + +  +F  +  K D   WNT+I      G  + A+ +F  M E G+  D +++I IL+A
Sbjct: 379 EASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSA 438

Query: 269 CSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           CSH GLV++G ++F  M  D  V P + HYAC++DLLGRAG   + V  ++N+  +PD  
Sbjct: 439 CSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDR 498

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           +W ALLG CRI+ N+ELG   AE +  LKPQ    Y+ L+++YA  GKW+   KVRELM 
Sbjct: 499 VWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMD 558

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVNDRM 415
            +  +K  G SW+   ++   F+ +DR+
Sbjct: 559 EKFIRKERGISWIDVGNKTHSFIASDRL 586



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 160/340 (47%), Gaps = 51/340 (15%)

Query: 71  GHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
           G +   G+++ AR +   ++  +L+  N +   YAK G +N A+ +F+ +  +D VS+N 
Sbjct: 106 GMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNT 165

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +++ Y++    +E++ L+ + R L M  +  SF G +  C  L  ++  K++HG  +   
Sbjct: 166 IVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAG 225

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
             ++L +++SI+D Y++ G +  A  +FD + VKD  +W T++ GY   G++++A  LF 
Sbjct: 226 FLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFH 285

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY-----AC---- 299
            M E     +PVS+ A+++  +   L  +   YF +M    + P +  +     AC    
Sbjct: 286 QMPEK----NPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIA 341

Query: 300 --------------------------MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                                     ++D+  + G++E +  +   +  + D  +W  ++
Sbjct: 342 ALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMI 401

Query: 334 GACRIYGNVELGAWAAEHLFM------LKPQHCGYYILLS 367
            A    G+ E     A  +F       LKP    + ++LS
Sbjct: 402 SALAQNGHGE----KAMQMFNDMVESGLKPDRITFIVILS 437



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 15/139 (10%)

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL-HTHL-----F 194
           E+LS    +   G++     F+  +  CA     K GK +H      HL HT        
Sbjct: 45  EALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVH-----LHLKHTGFKRPTTI 99

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           VAN ++  Y   GR   A K+FD + V++  SWN ++ GY  LG+V+ A  LF+ M E  
Sbjct: 100 VANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEK- 158

Query: 255 VGYDPVSYIAILTACSHGG 273
              D VS+  I+ A +  G
Sbjct: 159 ---DVVSWNTIVLAYAKQG 174


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 144/418 (34%), Positives = 241/418 (57%), Gaps = 3/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F++I + ++V+WNA++A FA      ++     +M      PN VT
Sbjct: 345 MYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVT 404

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + ++L AC+    L  G ++H+ I++ G N D+ + N+L  MY+KC  LN A  VF +I 
Sbjct: 405 VLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIG 464

Query: 120 FR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            + D VS+N L+    Q +   E L L   M    +K D V+    + +   +A+ + G 
Sbjct: 465 NKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGS 524

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH   ++  L+  + V+N++++ YT+ G ++ A K+FD +   D  SW++LI+GY   G
Sbjct: 525 QIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAG 584

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A  LF  MR  GV  + ++++ ILTACSH G+VE+G K +  MQ D  + PT+ H 
Sbjct: 585 CGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHC 644

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +CMVDLL RAG ++ A   I+ +P  PD  +W  LL AC+++GN+E+G  AAE++  + P
Sbjct: 645 SCMVDLLARAGCLDVAEDFIRQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDP 704

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
            +    ++L N++A +G W + +++R  M+  +  K PG SW++ +D+V  F+  D +
Sbjct: 705 SNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVHVFLAEDNL 762



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 182/382 (47%), Gaps = 14/382 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F ++  KN+VSW +M++ +++   E  A+ L  +M      P+  T
Sbjct: 142 MYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFT 201

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +++ +C+     +  +++HA +++     DL   NAL  MY K   +  A NVF+ I 
Sbjct: 202 FGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRII 261

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM-KHDVVSFMGAISACANLAAIKQGK 178
            +D +S+  +I G+SQ     E+L  F EM    + + +   F  A SAC+ L     G+
Sbjct: 262 IKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGR 321

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IHG+ I+  L + LF   S+ D Y + G ++ A  +F  +   D  +WN +I G+  + 
Sbjct: 322 QIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVS 381

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG---KKYFDEMQADSVKPTEM 295
               + + F  MR  G+  + V+ +++L ACS   ++  G     Y  +M  +   P   
Sbjct: 382 NAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPV-- 439

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM- 354
               ++ +  +   + DA+++ +++  + D   W  LL AC             + +F  
Sbjct: 440 -CNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFAS 498

Query: 355 -LKPQHCGYYILLSNMYAEAGK 375
            +KP H    + L+N+   +G+
Sbjct: 499 RIKPDH----VTLTNVLVSSGQ 516



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 140/285 (49%), Gaps = 13/285 (4%)

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           SVT T+++ AC+    L  G++IH  ++      D+ L N +  MY KCG L  A+N+F+
Sbjct: 98  SVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFD 157

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  ++ VS+  +I GYS+  +   +++L+ +M   G   D  +F   + +C+ L   K 
Sbjct: 158 SMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKL 217

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            +++H   ++      L   N+++  YT+  ++  A  +F  + +KD  SW ++I G+  
Sbjct: 218 ARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQ 277

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVK--- 291
           LG    A+  F  M    V Y P  ++  +  +ACS     + G+    ++    +K   
Sbjct: 278 LGYELEALCHFREMLSQSV-YQPNEFVFGSAFSACSKLLEPDCGR----QIHGLCIKFGL 332

Query: 292 PTEMHYAC-MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            +++   C + D+  + G +E A  +  ++  +PD   W A++  
Sbjct: 333 GSDLFAGCSLCDMYAKCGFLESARTVFYHIE-KPDLVAWNAIIAG 376


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 160/447 (35%), Positives = 243/447 (54%), Gaps = 38/447 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A   F  + E+++VSWNAM + +AQ     +AL L  +M      P+  T 
Sbjct: 202 YAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTW 261

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----- 116
              + +C+          I   I +K +  + F+  AL DM+AK G L +A+N+F     
Sbjct: 262 VVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGS 321

Query: 117 ----------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                       N+  RD VS+N +I GY+Q  + + S+ LF E
Sbjct: 322 QRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKE 381

Query: 149 M-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
           M   + ++ D V+    +SAC ++ A+K    +  +   K++   +   NS++  Y++ G
Sbjct: 382 MISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCG 441

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
            +  A++IF  +  +D  S+NTLI G+   G    AI L   M E+G+  D V+YI +LT
Sbjct: 442 SVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLT 501

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           ACSH GL+ +GK  F  +QA    PT  HYACMVDLLGRAG +++A  LI+++P++P A 
Sbjct: 502 ACSHAGLLNEGKNVFKSIQA----PTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAG 557

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           ++G+LL A RI+  V LG  AA  LF L+PQ+ G Y+LLSN+YA  G+W++  +VRE+MK
Sbjct: 558 VYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMK 617

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVNDR 414
               KK+ G SWV+ + +V  F V DR
Sbjct: 618 KGGLKKSVGMSWVEYKGQVHKFTVGDR 644



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 154/354 (43%), Gaps = 73/354 (20%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+ +   A  LF  +AE+ +  WN+M++   ++  E +A+ L   MP      N +T
Sbjct: 139 MYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPAR----NIIT 194

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T+++                                     YAK G L  A+  F+ + 
Sbjct: 195 WTSMVTG-----------------------------------YAKMGDLESARRYFDEMP 219

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS+N +   Y+Q     E+L+LF +M   G+  D  +++  IS+C+++        
Sbjct: 220 ERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADS 279

Query: 180 IHGVTIRKHLHTHLFVANSILDF--------------------------------YTRSG 207
           I  +  +KH+  + FV  ++LD                                 YTR G
Sbjct: 280 ILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVG 339

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE-DGVGYDPVSYIAIL 266
           ++ LA ++FD +P +D  SWN++I GY   GE   +I LF+ M     +  D V+  ++L
Sbjct: 340 KLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVL 399

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           +AC H G ++      D ++  ++K     +  ++ +  + G + DA ++ + +
Sbjct: 400 SACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTM 453



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 21/242 (8%)

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           D   Y+ ++  YS+    ++ +SLF     L ++     ++  I       A K G   H
Sbjct: 64  DASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKL-----AGKSGNLFH 118

Query: 182 GVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
              ++  H+  H F+ N+ILD Y ++G++DLA  +F+ +  +  A WN++I G    G  
Sbjct: 119 AYVLKLGHIDDH-FIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNE 177

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A+ LF  M    +    +++ +++T  +  G +E  ++YFDEM   SV    + +  M
Sbjct: 178 TEAVVLFNMMPARNI----ITWTSMVTGYAKMGDLESARRYFDEMPERSV----VSWNAM 229

Query: 301 VDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
                +    ++A+ L   +    + PD   W   + +C   G+  L   A   L M+  
Sbjct: 230 QSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTL---ADSILRMIDQ 286

Query: 358 QH 359
           +H
Sbjct: 287 KH 288



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K    A+A  +F  +  +++VS+N +++ FA N    +A++LV  M      P+ VT
Sbjct: 436 MYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVT 495

Query: 61  LTNVLPACARGHFLRPGKEIHARI 84
              VL AC+    L  GK +   I
Sbjct: 496 YIGVLTACSHAGLLNEGKNVFKSI 519


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 141/416 (33%), Positives = 243/416 (58%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K  +  +   LF  I + +++S+NAM++ +  N     A+ L RE+    +  NS T
Sbjct: 258 LYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSST 317

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L  ++P     + L+  + I    ++ G+     ++ ALT +Y +   +  A+ +F+ S 
Sbjct: 318 LVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESP 377

Query: 121 RDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
              + S+N +I GY+Q      ++SLF EM +  +  + V+    +SACA L A+  GK 
Sbjct: 378 EKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSIGKW 436

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG+   + L ++++V+ +++D Y + G I  A ++FD +  K+  +WN +I GYG+ G 
Sbjct: 437 VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGH 496

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LF  M + G+    V++++IL ACSH GLV +G + F  M  +   +P   HYA
Sbjct: 497 GKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYA 556

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGRAG + +A++ I+ +P+EP   +WGALLGAC I+ N E+   A++ LF L P+
Sbjct: 557 CMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPE 616

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + GYY+LLSN+Y+    + +A+ VR+++K R+  K PGC+ ++  D+   F   DR
Sbjct: 617 NVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDR 672



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 171/342 (50%), Gaps = 3/342 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K +R   A  +F  + E++ V WN M++ F++N     ++++  +M       +S T
Sbjct: 157 LYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTT 216

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL A A     R G  I     +KGL+ D+++   L  +Y+KCG     + +F+ I 
Sbjct: 217 LATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQID 276

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D +SYN +I GY+   +   +++LF E+   G + +  + +G I        ++  + 
Sbjct: 277 QPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRL 336

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I  ++++  +     V+ ++   Y R   +  A ++FD  P K  ASWN +I GY   G 
Sbjct: 337 IQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGL 396

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D AI+LF+ M    +  +PV+  +IL+AC+  G +  GK     ++++ ++        
Sbjct: 397 TDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTA 455

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           +VD+  + G + +A +L  +L V+ +   W A++    ++G+
Sbjct: 456 LVDMYAKCGSIVEARQLF-DLMVDKNVVTWNAMITGYGLHGH 496



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 184/419 (43%), Gaps = 46/419 (10%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSVTLTNVLPA 67
           A    LF+ +++ ++  +N ++  F+ N L   ++ L   +    N  P++ T    + A
Sbjct: 63  AHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISA 122

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRDEVSY 126
            +R    R G  +HA  I  G+  +LF+ +A+ D+Y K     LA+ VF++   RD V +
Sbjct: 123 ASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLW 182

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           N +I G+S+ S   +S+ +F +M  +G+  D  +    ++A A L   + G  I  +  +
Sbjct: 183 NTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASK 242

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
           K LH+ ++V   ++  Y++ G+      +FD +   D  S+N +I GY    E ++A+ L
Sbjct: 243 KGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTL 302

Query: 247 FEAMREDG--------VGYDPVSY---------------------------IAILTACSH 271
           F  +   G        VG  PV                              A+ T    
Sbjct: 303 FRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCR 362

Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDANIW 329
              V+  ++ FDE    S+      +  M+    + GL + A+ L + +   + P+    
Sbjct: 363 LNEVQFARQLFDESPEKSLAS----WNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTV 418

Query: 330 GALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWDEASKVRELM 386
            ++L AC   G + +G W    L   +      Y+   L +MYA+ G   EA ++ +LM
Sbjct: 419 TSILSACAQLGALSIGKW-VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM 476



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 106/194 (54%), Gaps = 2/194 (1%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
           +I A++I  G+++DL     LT  +   G +   + +FN +S  D   +N+LI G+S   
Sbjct: 32  QIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNG 91

Query: 138 DCSESLSLFSEMR-LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               S+ L++ +R    ++ D  ++  AISA + L   + G  +H  +I   + ++LFV 
Sbjct: 92  LPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVG 151

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           ++I+D Y +  R +LA K+FD +P +D+  WNT+I G+      + +I +F  M + G+ 
Sbjct: 152 SAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLS 211

Query: 257 YDPVSYIAILTACS 270
           +D  +   +LTA +
Sbjct: 212 FDSTTLATVLTAVA 225


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 146/447 (32%), Positives = 245/447 (54%), Gaps = 35/447 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL-VREMPIHNEFPNSVT 60
           YA      +A  +F  + E+++VSW  +V  +A+  L  +A +L  R + +    PN+VT
Sbjct: 188 YANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVT 247

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
           L   + A  +   L  G  +H  +   G+   + L NAL DM+ KCGC+  A+ VF+   
Sbjct: 248 LVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGME 307

Query: 118 -----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                        +  R+ VS++ +I  YSQ +   E++ LF E
Sbjct: 308 VKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFRE 367

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIH-GVTIRKHLHTHLFVANSILDFYTRSG 207
           M   G+     + +  +SACA L  +  G+ I+    +   +   + + N+++D + + G
Sbjct: 368 MIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCG 427

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
            +  A+K+FD +  ++  SWNT+I+ + + G+ + AI LFE ++ + +  D ++++ +L 
Sbjct: 428 DVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLA 487

Query: 268 ACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
           +CSH GLV +G++YF EM+    ++P   HYACM+DLLG+ GL+E+A ++ + +P+E D 
Sbjct: 488 SCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADE 547

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
             WGALL ACR++GNVE+GA  A+ L  L P   G Y+L+S +YA   KWD+   +R  M
Sbjct: 548 AGWGALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTM 607

Query: 387 KSREAKKNPGCSWVQTRDEVQDFVVND 413
           + R  KKNPGCS ++   +  DF+V D
Sbjct: 608 RDRGVKKNPGCSSIEVEGKFHDFLVAD 634



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 162/375 (43%), Gaps = 53/375 (14%)

Query: 29  MVANFAQNRLELKALQLVREMPIHNEFPN-------SVTLTNVLPACARGHFLRPGKEIH 81
           M+  F + RL  +AL L R + + +  P        +V           G     G+ IH
Sbjct: 107 MMRGFLRARLPARALGLFRRV-VRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIH 165

Query: 82  ARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDC 139
              ++ G +   + + NAL   YA    L+ A  VF+ +  RD VS+  L+ GY++    
Sbjct: 166 CAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLA 225

Query: 140 SESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
            E+  LF  M ++G M+ + V+ + A+SA   +  +  G  +H       +   + + N+
Sbjct: 226 DEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNA 285

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
           ++D + + G +  A ++FD + VKD  SW +++  Y   G++++A  LF+ M    V   
Sbjct: 286 LVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNV--- 342

Query: 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
            VS+  ++ A S     E+    F EM A  V P +   A +V                 
Sbjct: 343 -VSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPID---ATLV----------------- 381

Query: 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN----MYAEAG 374
                       ++L AC   G ++LG W  E+  +      G  + L N    M+A+ G
Sbjct: 382 ------------SVLSACAQLGCLDLGRWIYENYIV--SNKIGLTVNLGNALIDMFAKCG 427

Query: 375 KWDEASKVRELMKSR 389
              EASK+ + M  R
Sbjct: 428 DVGEASKLFDEMAER 442



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 126/276 (45%), Gaps = 35/276 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF----- 55
           M+ K      A  +F  +  K++ SW +MV  +A+      A QL ++MP  N       
Sbjct: 289 MFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCM 348

Query: 56  --------------------------PNSVTLTNVLPACARGHFLRPGKEIHAR-IIRKG 88
                                     P   TL +VL ACA+   L  G+ I+   I+   
Sbjct: 349 IAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNK 408

Query: 89  LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
           +   + L NAL DM+AKCG +  A  +F+ ++ R+ VS+N +I+ ++      E++ LF 
Sbjct: 409 IGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFE 468

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKE-IHGVTIRKHLHTHLFVANSILDFYTRS 206
           +++   +  D ++F+G +++C++   + +G+     + +   +   +     ++D   + 
Sbjct: 469 QLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKV 528

Query: 207 GRIDLANKIFDCLPVK-DSASWNTLILGYGMLGEVD 241
           G ++ A ++   +P++ D A W  L+    M G V+
Sbjct: 529 GLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVE 564


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 148/438 (33%), Positives = 238/438 (54%), Gaps = 33/438 (7%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           A A  +FH++       +N+++   + ++  L+AL L   M      P+ +T   V+ AC
Sbjct: 117 AYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKAC 176

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS--------- 119
                   G  +H  +++ G   D ++ ++L  +YA    L  A+ +FN+          
Sbjct: 177 NESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWN 236

Query: 120 -----------------------FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH 156
                                   RD +S+N +I GY+     +E+L+LF +MR +G+K 
Sbjct: 237 AMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKP 296

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
              + +  +SACA+L A+ +G  +H       +  +  V  +++D Y + G+I LA ++F
Sbjct: 297 TEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVF 356

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
           + +  KD  +WNT+I G  + G V  A  LF+ M+E GV  + ++++AIL+ACSH G+V+
Sbjct: 357 NAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVD 416

Query: 277 KGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +G+K  D M +   ++P   HY C++DLL RAG +E+A++LI  +P+EP+ +  GALLG 
Sbjct: 417 EGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGG 476

Query: 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395
           CRI+GN ELG    + L  L+P H G YILLSN+YA A KWD+A KVR LMK     K P
Sbjct: 477 CRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVP 536

Query: 396 GCSWVQTRDEVQDFVVND 413
           G S ++ +  V  FV  D
Sbjct: 537 GVSVIELKGMVHRFVAGD 554



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 118/234 (50%), Gaps = 2/234 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A  +F  +  ++++SWN M+  +A      +AL L  +M      P   T+
Sbjct: 242 YVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATV 301

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++L ACA    L  G  +H  I    +  +  +  AL DMYAKCG ++LA  VFN +  
Sbjct: 302 VSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMES 361

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D +++N +I G +   +  E+  LF EM+  G++ + ++F+  +SAC++   + +G+++
Sbjct: 362 KDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKL 421

Query: 181 HGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
                  + +   +     ++D   R+G ++ A ++   +P++ + S    +LG
Sbjct: 422 LDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLG 475



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 45/80 (56%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  + + A+ +F+ +  K++++WN ++A  A +    +A QL +EM      PN +T
Sbjct: 342 MYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDIT 401

Query: 61  LTNVLPACARGHFLRPGKEI 80
              +L AC+    +  G+++
Sbjct: 402 FVAILSACSHAGMVDEGQKL 421


>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 713

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 146/417 (35%), Positives = 234/417 (56%), Gaps = 2/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     EA  +F +  ++N ++W+AMV  ++QN   L+A++L   M      P+  T
Sbjct: 254 MYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYT 313

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  VL AC+   +L  GK++H+ +++ G    LF T AL DMYAK GCL  A+  F+ + 
Sbjct: 314 IVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQ 373

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD   +  LI GY Q SD  E+L L+  M+  G+  +  +    + AC++LA ++ GK+
Sbjct: 374 ERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQ 433

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG TI+      + + +++   YT+ G ++  N +F   P KD  SWN +I G    G+
Sbjct: 434 VHGHTIKHGFGLEVPIGSALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQ 493

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            D A+ LFE M  +G   D V+++ I++ACSH G VE+G  YF  M     + P   HYA
Sbjct: 494 GDEALELFEEMLAEGTEPDDVTFVNIISACSHKGFVERGWSYFHMMSDQFGLDPKVDHYA 553

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+L RAG +++  + I++  ++    +W  LL AC+ +GN ELG +A E L  L  +
Sbjct: 554 CMVDVLSRAGQLKETKEFIESASIDHGLCLWRILLSACKNHGNCELGVYAGEKLMSLGSR 613

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
               Y+ L+ +Y   G+  +  +V +LM++    K  GCSW+  +++   FVV D M
Sbjct: 614 ESSTYVQLAGIYTALGRMRDVERVWKLMRTNGVSKEVGCSWIALKNQWHVFVVGDTM 670



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 162/337 (48%), Gaps = 18/337 (5%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN---RLELKALQLVREMPIHNEFPNS 58
           YAK  + A+A  +F+ I  K++VSWN+++  ++QN         +QL REM   +  PN+
Sbjct: 61  YAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDILPNA 120

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC--LNLAQNVF 116
            TL  +  A +       G++ HA +++     D+++  +L  MY K G   L +    F
Sbjct: 121 YTLAGIFKAESSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLKYLYMVYYGF 180

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            + ++ +V    L     ++S C      F E +      D V F   +S+ A    +  
Sbjct: 181 WLCYKKDVLRRQL-----KSSIC------FLEEKEKESDSDYV-FTAVLSSLAATVYVGL 228

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G++IHG+T++  L   + ++N+++  Y++   ++ A K+FD    ++S +W+ ++ GY  
Sbjct: 229 GRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQ 288

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            GE   AI LF  M   G+     + + +L ACS    + +GK+    +     +     
Sbjct: 289 NGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFA 348

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
              +VD+  +AG + DA K    L  E D  +W +L+
Sbjct: 349 TTALVDMYAKAGCLADARKGFDCLQ-ERDVALWTSLI 384



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 171/404 (42%), Gaps = 48/404 (11%)

Query: 53  NEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
           N F ++ TL   L   ++   L  G+ +HA+IIR G +      N L + YAKCG L  A
Sbjct: 11  NPFSHTSTLLKALTHHSQHRNLVAGRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKA 70

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSES---LSLFSEMRLLGMKHDVVSFMGAISAC 168
            ++FN I  +D VS+N LI GYSQ    S S   + LF EMR   +  +  +  G   A 
Sbjct: 71  HSIFNAIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAE 130

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG--------------------R 208
           ++L +   G++ H + ++      ++V  S++  Y ++G                    R
Sbjct: 131 SSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLKYLYMVYYGFWLCYKKDVLR 190

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV-------GYDPVS 261
             L + I  C   +     ++  +   +L  +   + +    +  G+       G+  +S
Sbjct: 191 RQLKSSI--CFLEEKEKESDSDYVFTAVLSSLAATVYVGLGRQIHGITVKNGLLGFVALS 248

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL- 320
             A++T  S    + +  K FD     S     + ++ MV    + G   +A+KL   + 
Sbjct: 249 N-ALVTMYSKCESLNEACKMFD----SSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMF 303

Query: 321 --PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQHCGYYILLSNMYAEAGK 375
              ++P       +L AC     +  G     H F+LK    +H      L +MYA+AG 
Sbjct: 304 SAGIKPSEYTIVGVLNACSDICYLVEGKQL--HSFLLKLGFERHLFATTALVDMYAKAGC 361

Query: 376 WDEASKVRELMKSREAK--KNPGCSWVQTRDEVQDFVVNDRMKT 417
             +A K  + ++ R+     +    +VQ  D  +  ++  RMKT
Sbjct: 362 LADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKT 405


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 147/448 (32%), Positives = 245/448 (54%), Gaps = 34/448 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A  LF  + EK++VSWN +V  +A+     +A+ L R+    +   N+ + 
Sbjct: 139 YAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSF 198

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---- 117
             VL  C +   L+  K++H +++  G   +L L++++ D YAKCG +  A+ +F+    
Sbjct: 199 AGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLV 258

Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                       +  ++ VS++ LI GY++ S   E+L  F++M
Sbjct: 259 KDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKM 318

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
              G+  +  +F   + ACA++AA+K GK++HG  IR +   +  V +S++D Y++ G +
Sbjct: 319 MKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGML 378

Query: 210 DLANKIFDCLPVK-DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           + +  +F  +  K D   WNT+I      G  + A+ +F  M E G+  D +++I IL+A
Sbjct: 379 EASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSA 438

Query: 269 CSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           CSH GLV++G ++F  M  D  V P + HY+C++DLLGRAG   + V  ++N+  +PD  
Sbjct: 439 CSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDR 498

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           +W ALLG CRI+ N+ELG   AE +  LKPQ    Y+ L+++YA  GKW+   KVRELM 
Sbjct: 499 VWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMD 558

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVNDRM 415
            +  +K  G SW+   ++   F+ +DR+
Sbjct: 559 EKFIRKERGISWIDVGNKTHSFIASDRL 586



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 159/340 (46%), Gaps = 51/340 (15%)

Query: 71  GHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
           G +   G+++ AR +   ++  +L+  N +   YAK G +N A+ +F+ +  +D VS+N 
Sbjct: 106 GMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNT 165

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +++ Y++    +E++ L+ + R L M  +  SF G +  C  L  ++  K++HG  +   
Sbjct: 166 IVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAG 225

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
             ++L +++SI+D Y + G +  A  +FD + VKD  +W T++ GY   G++++A  LF 
Sbjct: 226 FLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFH 285

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY-----AC---- 299
            M E     +PVS+ A+++  +   L  +   YF +M    + P +  +     AC    
Sbjct: 286 QMPEK----NPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIA 341

Query: 300 --------------------------MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                                     ++D+  + G++E +  +   +  + D  +W  ++
Sbjct: 342 ALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMI 401

Query: 334 GACRIYGNVELGAWAAEHLFM------LKPQHCGYYILLS 367
            A    G+ E     A  +F       LKP    + ++LS
Sbjct: 402 SALAQNGHGE----KAMQMFNDMVESGLKPDRITFIVILS 437



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 15/139 (10%)

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL-HTHL-----F 194
           E+LS    +   G++     F+  +  CA     K GK +H      HL HT        
Sbjct: 45  EALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKGGKCVH-----LHLKHTGFKRPTTI 99

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           VAN ++  Y   GR   A K+FD + V++  SWN ++ GY  LG+V+ A  LF+ M E  
Sbjct: 100 VANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEK- 158

Query: 255 VGYDPVSYIAILTACSHGG 273
              D VS+  I+ A +  G
Sbjct: 159 ---DVVSWNTIVLAYAKQG 174


>gi|224140139|ref|XP_002323442.1| predicted protein [Populus trichocarpa]
 gi|222868072|gb|EEF05203.1| predicted protein [Populus trichocarpa]
          Length = 526

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 135/358 (37%), Positives = 213/358 (59%), Gaps = 1/358 (0%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           ++  L+N + +CA    LR G + H   I  G   + ++ ++L   Y KCG L+ A  VF
Sbjct: 127 DASVLSNAVSSCASTRDLRGGIQYHCLAISAGFIANAYIGSSLVTFYGKCGELDNAYKVF 186

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
             +  R+ VS+  +I G++Q       L L+  MR   +K +  +F   +SAC    A+ 
Sbjct: 187 KEMPVRNVVSWTAIISGFAQDWQVDMCLQLYCLMRNSTLKPNDFTFTSLLSACTGSGALG 246

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           QG+  H   I     ++L +AN+++  Y + G ++ A  IF+ +  KD  SWN++I GY 
Sbjct: 247 QGRSAHCQIIEMGFVSYLHIANALVSMYCKCGNVEDAFHIFENMVGKDIVSWNSMIAGYA 306

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G     I LFE M+  GV  D ++++ +L++C H G VE G+ YF+ M    VKP   
Sbjct: 307 QHGLAVQGIGLFERMKSQGVKPDAITFLGVLSSCRHAGFVEGGRNYFNSMVEYGVKPELD 366

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY+C+VDLLGRAGL+E+A   I+ +PV P+A IWG+L+ +CR++G+V +G  AAE+  +L
Sbjct: 367 HYSCIVDLLGRAGLLEEAQYFIERMPVSPNAVIWGSLVSSCRLHGSVWIGIQAAENTLLL 426

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +P+    ++ L+N+YA  G WD+A++VR+LMK R  K NPGCSW++ ++EV  F   D
Sbjct: 427 EPECAATHVQLANLYASVGFWDQAARVRKLMKDRRLKTNPGCSWIEIKNEVYRFRAED 484



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 122/250 (48%), Gaps = 2/250 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            Y K      A  +F  +  +N+VSW A+++ FAQ+      LQL   M      PN  T
Sbjct: 172 FYGKCGELDNAYKVFKEMPVRNVVSWTAIISGFAQDWQVDMCLQLYCLMRNSTLKPNDFT 231

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            T++L AC     L  G+  H +II  G    L + NAL  MY KCG +  A ++F N+ 
Sbjct: 232 FTSLLSACTGSGALGQGRSAHCQIIEMGFVSYLHIANALVSMYCKCGNVEDAFHIFENMV 291

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+N +I GY+Q     + + LF  M+  G+K D ++F+G +S+C +   ++ G+ 
Sbjct: 292 GKDIVSWNSMIAGYAQHGLAVQGIGLFERMKSQGVKPDAITFLGVLSSCRHAGFVEGGRN 351

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGMLG 238
                +   +   L   + I+D   R+G ++ A    + +PV  +A  W +L+    + G
Sbjct: 352 YFNSMVEYGVKPELDHYSCIVDLLGRAGLLEEAQYFIERMPVSPNAVIWGSLVSSCRLHG 411

Query: 239 EVDTAINLFE 248
            V   I   E
Sbjct: 412 SVWIGIQAAE 421



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 121/270 (44%), Gaps = 39/270 (14%)

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
           +  D      A+S+CA+   ++ G + H + I      + ++ +S++ FY + G +D A 
Sbjct: 124 LSFDASVLSNAVSSCASTRDLRGGIQYHCLAISAGFIANAYIGSSLVTFYGKCGELDNAY 183

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
           K+F  +PV++  SW  +I G+    +VD  + L+  MR   +  +  ++ ++L+AC+  G
Sbjct: 184 KVFKEMPVRNVVSWTAIISGFAQDWQVDMCLQLYCLMRNSTLKPNDFTFTSLLSACTGSG 243

Query: 274 LVEKGKKYFDEMQADSVKPTEMHYA-CMVDLLGRAGLMEDAVKLIKNL------------ 320
            + +G+    ++  +    + +H A  +V +  + G +EDA  + +N+            
Sbjct: 244 ALGQGRSAHCQI-IEMGFVSYLHIANALVSMYCKCGNVEDAFHIFENMVGKDIVSWNSMI 302

Query: 321 ----------------------PVEPDANIWGALLGACRIYGNVELGAWAAEHL--FMLK 356
                                  V+PDA  +  +L +CR  G VE G      +  + +K
Sbjct: 303 AGYAQHGLAVQGIGLFERMKSQGVKPDAITFLGVLSSCRHAGFVEGGRNYFNSMVEYGVK 362

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELM 386
           P+   +Y  + ++   AG  +EA    E M
Sbjct: 363 PE-LDHYSCIVDLLGRAGLLEEAQYFIERM 391


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 152/424 (35%), Positives = 245/424 (57%), Gaps = 6/424 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+KS    EA  LF ++  +   SWN+M+A +A      +AL L  +M      PN++T+
Sbjct: 250 YSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITI 309

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T V   CA+   L  G+   A I  + L  ++ +  AL +MY KC  ++ A++ F+ +  
Sbjct: 310 TTVFSICAKTGDLDTGRRARAWIREEDLQ-NVIVHTALMEMYVKCRAIDEARHEFDRMPR 368

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD V+++ +I GYSQ     ESL LF  M+    K + V+ +G +SACA L + + G++I
Sbjct: 369 RDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQI 428

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
                 + L    ++ ++++D YT+ G +  A  +F+ +  K   +WN++I G  + G  
Sbjct: 429 GNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGFA 488

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYAC 299
           + AI L+  M  DG+  + V+++A+LTAC+H GLV+KG  +F+EM+    V P   H AC
Sbjct: 489 EDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQVEHCAC 548

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLL ++G + +A K I ++ VEP+A IW  LL ACR + +VEL   AA  L  L+P +
Sbjct: 549 IVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAAGKLVALEPNN 608

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
              Y+LLSN+YA+AG W +  ++R+LM+S+  +K    SW++   EV  F+V D   T+ 
Sbjct: 609 SSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDGEVHRFLVQD---TYH 665

Query: 420 PGPA 423
           P  A
Sbjct: 666 PRSA 669



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 182/441 (41%), Gaps = 73/441 (16%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A +LF  +         A ++  ++  L  + +++V  +        S  +  VL +CA+
Sbjct: 127 ARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCAQ 186

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
                 G + H   + +G+  D+F+  AL D YAK G ++ A   F  +  +D +  N L
Sbjct: 187 SAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCL 246

Query: 130 IVGYSQTSDCS-------------------------------ESLSLFSEMRLLGMKHDV 158
           I GYS++ D                                 E+L+LF +M   G   + 
Sbjct: 247 ITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNA 306

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
           ++     S CA    +  G+      IR+    ++ V  ++++ Y +   ID A   FD 
Sbjct: 307 ITITTVFSICAKTGDLDTGRRARA-WIREEDLQNVIVHTALMEMYVKCRAIDEARHEFDR 365

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P +D  +W+T+I GY   G    ++ LFE M+      + V+ + +L+AC+  G  E G
Sbjct: 366 MPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELG 425

Query: 279 KKYFDEMQADSVKPT--------EMHYAC-----------------------MVDLLGRA 307
           ++  + +++ ++  T        +M+  C                       M+  L   
Sbjct: 426 EQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALN 485

Query: 308 GLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364
           G  EDA+ L + +    ++P+   + ALL AC   G V+ G    E   M K QH    +
Sbjct: 486 GFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEE--MKKKQHVSPQV 543

Query: 365 ----LLSNMYAEAGKWDEASK 381
                + ++  ++G+  EA K
Sbjct: 544 EHCACIVDLLCKSGRLWEAYK 564



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 125/234 (53%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA + F  +  +++V+W+ M+A ++QN    ++L+L   M   N  PN VT
Sbjct: 349 MYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVT 408

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL ACA+      G++I   I  + L    +L +AL DMY KCG +  A++VFN + 
Sbjct: 409 LVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRME 468

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  V++N +I G +      ++++L+ +M   G++ + V+F+  ++AC +   + +G  
Sbjct: 469 QKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIA 528

Query: 180 -IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
               +  ++H+   +     I+D   +SGR+  A K    + V+ +A  W+TL+
Sbjct: 529 FFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLL 582



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 5/217 (2%)

Query: 93  LFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNI-LIVGYSQTSDCSESLSLFSEMRL 151
           L  T  L  + +       A+++F++  R   +     + G S+ S   E + + S +  
Sbjct: 108 LLKTRPLHALLSNASTYRAARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHR 167

Query: 152 LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211
            G           + +CA  AA  QG + H   + + +   +FV  +++DFY ++G +D 
Sbjct: 168 RGGAIPSGCIPLVLKSCAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDS 227

Query: 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271
           A   F  +PVKD    N LI GY   G+V+ A  LF++M          S+ +++   +H
Sbjct: 228 ALMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMPR----RTSASWNSMIACYAH 283

Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
           GG   +    FD+M  +   P  +    +  +  + G
Sbjct: 284 GGEFREALTLFDQMLREGASPNAITITTVFSICAKTG 320


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 145/446 (32%), Positives = 242/446 (54%), Gaps = 34/446 (7%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
           AK    ++A  L      ++++SW +++A +++     +A+   + M      P+ VT+ 
Sbjct: 123 AKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVI 182

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN----- 117
            VL AC++   L  G  +H  +  KG++    L  AL DMYAKCG    A+ VF+     
Sbjct: 183 GVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRG 242

Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                       +  RD +++N +I GY  +    E+L LF  M
Sbjct: 243 RRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNM 302

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
           R   ++ D  + +  +SACA+L A+ QG+ +H     + + T +++  ++LD Y + GR+
Sbjct: 303 RRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRV 362

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           + A  +F  +  +D  +W  +I G    G     +  F  MR DG   +PVSYIA+LTAC
Sbjct: 363 NEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTAC 422

Query: 270 SHGGLVEKGKKYFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           SH  L+ +G+ YFDEM+   ++ P   HY CM+DLLGR+GL+++A+ L+K +P++P++ I
Sbjct: 423 SHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVI 482

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
           W ++L ACR++  ++L   AAEHL  ++P     Y+ L N+  ++ KW++ASK+R LM+ 
Sbjct: 483 WASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEE 542

Query: 389 REAKKNPGCSWVQTRDEVQDFVVNDR 414
           R+ KK  G S V    +V  FVV+D+
Sbjct: 543 RQVKKTAGYSSVTVAGQVHKFVVSDK 568



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 192/386 (49%), Gaps = 7/386 (1%)

Query: 15   FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL 74
             ++I  ++++SWN++++ +A      +A+  +++M  H + P+  +  ++L    +    
Sbjct: 892  LNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDW 951

Query: 75   RPGKEIHARIIRKGLNFD-LFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
            + G +IH  + + G +   + +   L DMY KC C + +  +FN I        N LI  
Sbjct: 952  QLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITS 1011

Query: 133  YSQTSDCSESLSLFSEMRLLGMKHDVVSF---MGAISACANLAAIKQGKEIHGVTIRKHL 189
                +    +L +   M + G+  D V+F   M AIS  A+  ++   + +H   ++   
Sbjct: 1012 SLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSAS-PSLTSCQMLHSCLVKLGF 1070

Query: 190  HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
               + V +S++  Y  +G++  ++ IF+ L   +   +  +I      G+   A+ LF+ 
Sbjct: 1071 EMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQ 1130

Query: 250  MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAG 308
            M   G+  D V+++  +  C   G+ E+G+   + M+A   + P E H+ACMV+LL R G
Sbjct: 1131 MVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDG 1190

Query: 309  LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
             +++A+++++  P+      W +LL +C+ +G   LG  AA  L  +  +     + +SN
Sbjct: 1191 FVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSN 1250

Query: 369  MYAEAGKWDEASKVRELMKSREAKKN 394
             + + G  + A +++E+   +E KK+
Sbjct: 1251 FFNDIGDRETALRIKEMTNVKEVKKS 1276



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 178/413 (43%), Gaps = 41/413 (9%)

Query: 2    YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
            Y     P  A  LF  +  +N    N ++      +L  + +    +M       N ++ 
Sbjct: 776  YMHVESPHAALSLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSY 835

Query: 62   TNVLPACAR-GHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCG-CLNLAQNVFNI 118
               +  C + G +L  G+++H  +++ G +  ++FL+N+L D+Y+  G  ++  + + +I
Sbjct: 836  CYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDI 895

Query: 119  SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
               D +S+N ++  Y+      E++    +M   G    V SF+  ++        + G 
Sbjct: 896  LSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQLGV 955

Query: 179  EIHGVTIRKHLH-THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            +IHG+  +     + + V  +++D Y +    D +  IF+ +P       N+LI      
Sbjct: 956  QIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLGC 1015

Query: 238  GEVDTAINLFEAMREDGVGYDPVSYIAI-----------LTACS--HGGLVEKGKKYFDE 284
               D A+ +   M  +GV  D V++ A            LT+C   H  LV+ G     E
Sbjct: 1016 NMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGF----E 1071

Query: 285  MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344
            M           YAC       AG +  +  + + L ++P+   + A++ AC  YG+   
Sbjct: 1072 MDMAVCSSLITAYAC-------AGQLSSSHLIFEGL-LDPNVICFTAIISACARYGD--- 1120

Query: 345  GAWAAEHLF------MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK-SRE 390
            GA A E LF       LKP +  +   ++    +AG ++E   V ELM+ SRE
Sbjct: 1121 GARAME-LFDQMVSSGLKPDNVTFLCAIAGC-DQAGMFEEGRLVIELMRASRE 1171



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 126/296 (42%), Gaps = 12/296 (4%)

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            ++ RD  S N +I G+ +      + +++  M   G++    +F   +  C+   A+  
Sbjct: 694 TMAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEAL-- 751

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
             ++HG  +   L  + FV +++++ Y        A  +F  LP++++A  N ++ G G 
Sbjct: 752 --QLHGRVLALGLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGN 809

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTAC-SHGGLVEKGKKYFDEMQADSVKPTEM 295
           L   +  I  F  MR   +  + +SY   +  C  +G  +E+G++    +      P+ +
Sbjct: 810 LKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNI 869

Query: 296 HYA-CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV-ELGAWAAEHLF 353
             +  +VDL    G   D VK + ++  E D   W ++L      G++ E   +  + L+
Sbjct: 870 FLSNSLVDLYSAIGDSVDTVKALNDILSE-DVISWNSILSMYADRGHMKEAVYYLKQMLW 928

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
             K      ++ L  +  + G W    ++  ++     K    CS V  +  + D 
Sbjct: 929 HGKMPSVRSFVSLLALSGKTGDWQLGVQIHGIVH----KLGFSCSSVHVQTTLIDM 980



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 34/199 (17%)

Query: 180 IHGVTIRKHLHTHL-FVANSILDFYTRSGRIDLANKIFDCLPVKDSA------------- 225
           +H   +R  L +   FVANS++  YT  G      + FD +PVKD+              
Sbjct: 67  LHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMG 126

Query: 226 ------------------SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
                             SW +LI  Y        A++ F+ M  +G+  D V+ I +L+
Sbjct: 127 MLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLS 186

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           ACS    +E G      ++   +  +E     ++D+  + G    A ++   +       
Sbjct: 187 ACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQ 246

Query: 328 IWGALL-GACRIYGNVELG 345
            W A++ G C+ +G+V++ 
Sbjct: 247 SWNAIIDGYCK-HGHVDVA 264



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 10/111 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  R  EA+ +F  + ++++ +W AM+A  A N +    L+   +M      PN V+
Sbjct: 355 MYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVS 414

Query: 61  LTNVLPACARGHFLRPGK----------EIHARIIRKGLNFDLFLTNALTD 101
              VL AC+    L  G+           IH +I   G   DL   + L D
Sbjct: 415 YIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLD 465


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 142/415 (34%), Positives = 233/415 (56%), Gaps = 2/415 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK     EA   F  ++ +++V WN MV+ +A N ++ KA  + + M +     +  T 
Sbjct: 223 YAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTF 282

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T+++ +C        GK++H  IIR   + D+ + +AL DMY+K   +  A+  F+ +  
Sbjct: 283 TSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMJV 342

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ VS+  + VGY Q  D  E + L  EM  +    D ++    +S+C NL+A  +  ++
Sbjct: 343 KNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQV 402

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   +       L +AN+++  Y++ G I  A + F  +   D  SW +L+  Y   G  
Sbjct: 403 HAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLS 462

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYAC 299
              +++FE +    V  D V+++ +L+AC+HGG V +G  YF+ M     + P   HY  
Sbjct: 463 KQGVDVFEKILSSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTS 522

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           ++DLLGRAG +++AV L+ ++PVEP ++  GA LGAC++Y NV L  WA+E LF+++P  
Sbjct: 523 IIDLLGRAGFLDEAVNLLTSMPVEPRSDTLGAFLGACKVYRNVGLARWASEKLFVMEPNE 582

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            G Y L+SNMYA  G W + ++VR+LM+ R   K PGCSW++T  EV  FV  D+
Sbjct: 583 PGKYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSWMETAGEVHTFVSRDK 637



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 186/385 (48%), Gaps = 30/385 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL----VREMPIHNEFP 56
           +Y K     +   +F  +  KN+VSWN ++    +   +   ++L     R+M +    P
Sbjct: 117 VYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHCFRQMVLEMMAP 176

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N +TL  +L A    + +   +++H  I++ G + + F+ +AL D YAK G ++ AQ+ F
Sbjct: 177 NCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAF 236

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           + +S RD V +N+++  Y+      ++  +F  MRL G+K D  +F   I++C  L +  
Sbjct: 237 DEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCG 296

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK++HG+ IR      + VA++++D Y+++  I+ A K FD + VK+  SW T+ +GYG
Sbjct: 297 LGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMJVKNIVSWTTMXVGYG 356

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDE 284
             G+    + L + M       D ++  +IL++C            H  +VE G + F  
Sbjct: 357 QHGDGKEXMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLS 416

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344
           +              +V    + G +  A +   ++  EPD   W +L+GA   +G  + 
Sbjct: 417 IA-----------NALVSAYSKCGSIGSAFQSFSSV-AEPDIISWTSLMGAYAFHGLSKQ 464

Query: 345 GAWAAEHLFM--LKPQHCGYYILLS 367
           G    E +    ++P    +  +LS
Sbjct: 465 GVDVFEKILSSNVRPDKVAFLGVLS 489



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 130/270 (48%), Gaps = 12/270 (4%)

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           ++ L   A+  FL  GK++HA +I+ G    L L N +  +Y KC   N    +F+ +  
Sbjct: 77  SHALKISAKLGFLHGGKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPL 136

Query: 121 RDEVSYNILIVGYSQTSDCSESL-----SLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           ++ VS+N LI G  +  +C  +L       F +M L  M  + ++  G + A   L  + 
Sbjct: 137 KNVVSWNTLICGVVE-GNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASIELNDVG 195

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
             +++H   ++    ++ FV ++++D Y + G +D A   FD +  +D   WN ++  Y 
Sbjct: 196 ICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYA 255

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
           + G    A  +F+ MR +GV  D  ++ +++ +C   G    GK+    +   S     +
Sbjct: 256 LNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVL 315

Query: 296 HYACMVDLLGRAGLMEDAVK-----LIKNL 320
             + +VD+  +   +EDA K     J+KN+
Sbjct: 316 VASALVDMYSKNENIEDARKAFDGMJVKNI 345



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 111/224 (49%), Gaps = 2/224 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K+    +A   F  +  KNIVSW  M   + Q+    + ++L++EM     +P+ + 
Sbjct: 323 MYSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPDELA 382

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA-QNVFNIS 119
           L ++L +C          ++HA ++  G    L + NAL   Y+KCG +  A Q+  +++
Sbjct: 383 LASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVA 442

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D +S+  L+  Y+      + + +F ++    ++ D V+F+G +SACA+   + +G  
Sbjct: 443 EPDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSACAHGGFVLEGLH 502

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
              + I  + +        SI+D   R+G +D A  +   +PV+
Sbjct: 503 YFNLMINVYQIMPDSEHYTSIIDLLGRAGFLDEAVNLLTSMPVE 546


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 154/415 (37%), Positives = 236/415 (56%), Gaps = 12/415 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+     EA  LF     +++ +W A+V+ +AQN +  +A ++   MP  N    +V+ 
Sbjct: 234 YARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERN----AVSW 289

Query: 62  TNVLPACARGHFLRPGKEIHARI-IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++ A  +   +   KE+   +  R   +++  LT      YA+ G L  A+ VF+ + 
Sbjct: 290 NAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTG-----YAQAGMLEEAKAVFDTMP 344

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+  ++  YSQ     E+L LF EM   G   +  +F   +S CA++AA++ G +
Sbjct: 345 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 404

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  IR       FV N++L  Y + G ++ A   F+ +  +D  SWNT+I GY   G 
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGF 464

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ +F+ MR      D ++ + +L ACSH GLVEKG  YF  M  D  V     HY 
Sbjct: 465 GKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYT 524

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLGRAG + +A  L+K++P EPD+ +WGALLGA RI+ N ELG  AAE +F L+P+
Sbjct: 525 CMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPE 584

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + G Y+LLSN+YA +GKW +A K+R +M+ R  KK PG SW++ +++V  F   D
Sbjct: 585 NAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGD 639



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 157/339 (46%), Gaps = 36/339 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+ + R   A+ LF  I   +  S+N ++   A +     A  L  EMP+ +    +V +
Sbjct: 79  YSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMI 138

Query: 62  TN----VLPACARGHF-LRPGKE------IHARIIRKG------------LNFDLFLTNA 98
           ++     L + AR +F L P K+      + A  +R G              +D+   NA
Sbjct: 139 SSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNA 198

Query: 99  LTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157
           L   Y + G ++ A+ +F+ +  RD VS+NI++ GY++  D  E+  LF    +     D
Sbjct: 199 LMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPV----RD 254

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
           V ++   +S  A    +++ + +      ++  +     N+++  Y +   +D A ++F+
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSW----NAMVAAYIQRRMMDEAKELFN 310

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            +P ++ ASWNT++ GY   G ++ A  +F+ M +     D VS+ A+L A S GG  E+
Sbjct: 311 MMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEE 366

Query: 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
             + F EM           +AC++        +E  ++L
Sbjct: 367 TLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQL 405



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 163/364 (44%), Gaps = 84/364 (23%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN-RLELKALQLVREMPIHNEFPNSVT 60
           + ++ R A+A  LF  +  ++  ++NAM+A ++ N RL L A  L R +P     P++ +
Sbjct: 48  HMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAA-SLFRAIP----RPDNYS 102

Query: 61  LTNVLPACARGHFLRPGKEIHARI-IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
              +L A A    L   + +   + +R  + +++ +++     +A  G ++LA++ F+++
Sbjct: 103 YNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISS-----HANHGLVSLARHYFDLA 157

Query: 120 -FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D VS+N ++  Y +     E+  LF+       + DV+S+                 
Sbjct: 158 PEKDAVSWNGMLAAYVRNGRVEEARGLFNSR----TEWDVISW----------------- 196

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
                             N+++  Y + G++  A ++FD +P +D  SWN ++ GY   G
Sbjct: 197 ------------------NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRG 238

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEM-- 295
           ++  A  LF+A        D  ++ A+++  +  G++E+ ++ FD M + ++V    M  
Sbjct: 239 DMVEARRLFDA----APVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVA 294

Query: 296 ------------------------HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
                                    +  M+    +AG++E+A  +   +P + DA  W A
Sbjct: 295 AYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAA 353

Query: 332 LLGA 335
           +L A
Sbjct: 354 MLAA 357



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 140/335 (41%), Gaps = 52/335 (15%)

Query: 89  LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ------------ 135
           L  ++  +N     + + G +  A+ +F  +  R   +YN ++ GYS             
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 136 -------------------TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
                              +S  +++  LF EM +     D V++   IS+ AN   +  
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPV----RDSVTYNVMISSHANHGLVSL 149

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            +    +   K   +     N +L  Y R+GR++ A  +F+     D  SWN L+ GY  
Sbjct: 150 ARHYFDLAPEKDAVSW----NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQ 205

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G++  A  LF+ M     G D VS+  +++  +  G + + ++ FD      V      
Sbjct: 206 WGKMSEARELFDRM----PGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FT 257

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           +  +V    + G++E+A ++   +P E +A  W A++ A   Y    +   A E   M+ 
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNAMVAA---YIQRRMMDEAKELFNMMP 313

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
            ++   +  +   YA+AG  +EA  V + M  ++A
Sbjct: 314 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDA 348



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A   F  + E+++VSWN M+A +A++    +AL++   M   +  P+ +T
Sbjct: 427 MYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDIT 486

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF 91
           L  VL AC+           H+ ++ KG+++
Sbjct: 487 LVGVLAACS-----------HSGLVEKGISY 506


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 145/402 (36%), Positives = 231/402 (57%), Gaps = 2/402 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  LF  +   ++V W  M+  + QN   L AL L  +    +  PNSVT
Sbjct: 267 MYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVT 326

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  VL A A+   L  G+ IHA  ++  +  +  + NAL DMYAKC  L+ A  +F  IS
Sbjct: 327 IATVLSASAQLRNLSLGRLIHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRIS 386

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V++N LI GY +    +E+L LFS+MR+ G   D +S + A+SAC  L  +  GK 
Sbjct: 387 NKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIGKC 446

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   +++   ++++V  ++L+ Y +   +  A ++F  +  ++S +W  +I GYGM G+
Sbjct: 447 FHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFSEMSERNSVTWGAMIGGYGMQGD 506

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              +I+L   M +D +  + V + +IL+ CSH G+V  GK  FD M Q  ++ P+  HYA
Sbjct: 507 SAGSIDLLNKMLKDNIQPNEVVFTSILSTCSHTGMVSVGKMCFDSMAQYFNITPSMKHYA 566

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+L RAG +E+A++ I+ +P+  D +IWGA L  C+++  +E G  A   + +L P 
Sbjct: 567 CMVDVLARAGNLEEALEFIQKMPMPADISIWGAFLHGCKLHSRLEFGEEAINRMMVLHPD 626

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
              +Y+L+SN+Y   G+WD++  +R LM+ R   K PGCS V
Sbjct: 627 KPDFYVLMSNLYTSYGRWDKSLAIRRLMQERGLVKLPGCSSV 668



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 173/342 (50%), Gaps = 2/342 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+     A  +F  I  +N+VSW +M++   QN    + L L  EM      P+  T
Sbjct: 166 MYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYT 225

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + +VL AC     L  G+ +H  +I+ G+ F+ F+T A+ DMY KCG +  A+ +F+ + 
Sbjct: 226 MASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELG 285

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           F D V +  +IVGY+Q     ++L LFS+ + + +  + V+    +SA A L  +  G+ 
Sbjct: 286 FVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRL 345

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH ++++  +  +  V N+++D Y +   +  AN IF  +  KD  +WN+LI GY     
Sbjct: 346 IHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDM 405

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A+ LF  MR  G   D +S +  L+AC   G +  GK +       +          
Sbjct: 406 GNEALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTA 465

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           +++L  +   +  A ++   +  E ++  WGA++G   + G+
Sbjct: 466 LLNLYNKCADLPSAQRVFSEMS-ERNSVTWGAMIGGYGMQGD 506



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 122/263 (46%), Gaps = 7/263 (2%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L  +LPACA    LR    +HAR++  GL   L     L   YA  G L  A+ V + + 
Sbjct: 26  LHRLLPACATLPSLR---ALHARLLAHGLLRALRARTKLLSCYAALGDLASARRVLDETP 82

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMR--LLGMKHDVVSFMGAISACANLAAIKQG 177
           R D  +Y + +  ++     +++L+L   MR        DVV    A+ A    A  + G
Sbjct: 83  RPDPYTYRVALGWHAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRYG 142

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + +H   ++       FV N ++D Y ++G ++ A K+FD +  ++  SW +++ G    
Sbjct: 143 RRLHCNAVKAG-GADGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQN 201

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G  +  + LF  MRE+ V     +  ++L AC+  G + +G+     +    +       
Sbjct: 202 GFAEEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFIT 261

Query: 298 ACMVDLLGRAGLMEDAVKLIKNL 320
           A ++D+  + G +EDA +L   L
Sbjct: 262 AAVLDMYVKCGEVEDARRLFDEL 284


>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 638

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 153/418 (36%), Positives = 238/418 (56%), Gaps = 4/418 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAKS    EA  LF  +AEK+++SW+ ++A + QN    +AL++  EM      PN  T+
Sbjct: 189 YAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVATV 248

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL ACA  + L  G++ H   IRKGL  ++ ++ AL DMY KC     A  VF+ I  
Sbjct: 249 LCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPK 308

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKE 179
           +D VS+  LI G++       S+  FS M L    + D +  +  + +C+ L  +KQ + 
Sbjct: 309 KDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSELGFLKQAEC 368

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   I+    ++ F+  S+++ Y+R G +  A+K+F+ + +KD+  W +LI GYG+ G+
Sbjct: 369 FHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALKDTVVWTSLITGYGIHGK 428

Query: 240 VDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
              A+  F  M R   V  + V++++IL+ACSH GL+ +G + F+ M  D  + P   HY
Sbjct: 429 GTKALETFNHMVRSSEVKPNEVTFLSILSACSHAGLIHEGLRIFELMVNDYRLAPNLEHY 488

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           A +VDLLGR G ++ A+++ K +P  P   I G LLGACRI+ N E+    A+ LF L+ 
Sbjct: 489 AVLVDLLGRVGELDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKQLFELES 548

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
            H GYY+L+SNMY   G+W+   K+R  +K R  KK    S ++ R +V  FV +D +
Sbjct: 549 NHAGYYMLMSNMYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHKFVADDDL 606



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 199/392 (50%), Gaps = 8/392 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MY K  R  EA  +F+ + + +IV+W++MV+ F +N    +A++  R M   ++  P+ V
Sbjct: 86  MYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMATASDVTPDRV 145

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL  ++ AC +    R G+ +H  ++R+G + DL L N+L + YAK      A N+F  +
Sbjct: 146 TLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMM 205

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + +D +S++ +I  Y Q    +E+L +F+EM   G + +V + +  + ACA    ++QG+
Sbjct: 206 AEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVATVLCVLQACAAANDLEQGR 265

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           + H + IRK L T + V+ +++D Y +    + A  +F  +P KD  SW  LI G+ + G
Sbjct: 266 KTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWVALISGFTLNG 325

Query: 239 EVDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
               +I  F  M  E+    D +  + +L +CS  G +++ + +   +            
Sbjct: 326 MAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSELGFLKQAECFHSYVIKYGFDSNPFIG 385

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--- 354
           A +V+L  R G + +A K+   + ++ D  +W +L+    I+G          H+     
Sbjct: 386 ASLVELYSRCGSLGNASKVFNEIALK-DTVVWTSLITGYGIHGKGTKALETFNHMVRSSE 444

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
           +KP    +  +LS   + AG   E  ++ ELM
Sbjct: 445 VKPNEVTFLSILSAC-SHAGLIHEGLRIFELM 475



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 156/326 (47%), Gaps = 4/326 (1%)

Query: 18  IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPG 77
           + ++ +  WN ++ + ++++   + +    +M    E P++ TL   L AC     ++ G
Sbjct: 1   MTKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYG 60

Query: 78  KEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           + IH  + +   L  DL++ ++L  MY KCG +  A  +FN +   D V+++ ++ G+ +
Sbjct: 61  EMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEK 120

Query: 136 TSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
                +++  F  M     +  D V+ +  +SAC  L+  + G+ +HG  +R+     L 
Sbjct: 121 NGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLS 180

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           + NS+L+ Y +S     A  +F  +  KD  SW+T+I  Y   G    A+ +F  M +DG
Sbjct: 181 LVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDG 240

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
              +  + + +L AC+    +E+G+K  +      ++        +VD+  +    E+A 
Sbjct: 241 TEPNVATVLCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAY 300

Query: 315 KLIKNLPVEPDANIWGALLGACRIYG 340
            +   +P + D   W AL+    + G
Sbjct: 301 AVFSRIP-KKDVVSWVALISGFTLNG 325


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 155/421 (36%), Positives = 246/421 (58%), Gaps = 2/421 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  + A A  +   + E ++VSW AM+A + Q+ +  +ALQL  EM       +++ 
Sbjct: 507 MYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIG 566

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             + + ACA    LR G++IHA+    G   DL + NAL  +YA+CG +  A   F  I 
Sbjct: 567 FASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIG 626

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ +S+N L+ G +Q+    E+L +F  M     + ++ ++  AISA A+LA IKQG++
Sbjct: 627 DKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQ 686

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH + ++    +   V+NS++  Y +SG I  A + F+ +  ++  SWN +I GY   G 
Sbjct: 687 IHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGC 746

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+ LFE M+  G+  + V+++ +L+ACSH GLV++G  YF+ M +   + P   HY 
Sbjct: 747 GMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYV 806

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGRAG ++ A++ IK +P+  DA IW  LL AC I+ N+E+G  AA HL  L+P+
Sbjct: 807 CVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPE 866

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
               Y+L+SN+YA + +W      R+LMK R  KK PG SW++ ++ V  F   D++   
Sbjct: 867 DSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPL 926

Query: 419 T 419
           T
Sbjct: 927 T 927



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 178/336 (52%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K+     A  +F+ I  K+IV+W AM++  +QN LE +A+ L  +M     FP    
Sbjct: 204 LYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYV 263

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L++VL A  +      G+++H  +I+ G + + ++ N L  +Y++   L  A+ +F+ ++
Sbjct: 264 LSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMN 323

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VSYN LI G  Q      +L LF++M+   +K D ++    +SACA++ A+ +G +
Sbjct: 324 SRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQ 383

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+  +   + +  S+LD Y++   ++ A+K F     ++   WN +++ YG L  
Sbjct: 384 LHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDN 443

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +  +  +F  M+ +G+  +  +Y +IL  C+  G +  G++    +     +      + 
Sbjct: 444 LSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSV 503

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++D+  + G +  A+++++ LP E D   W A++  
Sbjct: 504 LIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAG 538



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 162/314 (51%), Gaps = 1/314 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y++S +   A  +F  +  ++ VS+N++++   Q     +AL+L  +M      P+ +T
Sbjct: 305 LYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCIT 364

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + ++L ACA    L  G ++H+  I+ G++ D+ L  +L D+Y+KC  +  A   F    
Sbjct: 365 VASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTE 424

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             + V +N+++V Y Q  + S+S  +F +M++ GM  +  ++   +  C +L A+  G++
Sbjct: 425 TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ 484

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+     +++V + ++D Y + G++ LA +I   LP  D  SW  +I GY     
Sbjct: 485 IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDM 544

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ LFE M   G+ +D + + + ++AC+    + +G++   +  A            
Sbjct: 545 FSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNA 604

Query: 300 MVDLLGRAGLMEDA 313
           ++ L  R G +++A
Sbjct: 605 LISLYARCGRIQEA 618



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 157/344 (45%), Gaps = 6/344 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +      A  +F   + +++ SWN M+  F   +   +   L R M      PN  T 
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 62  TNVLPACARGHF-LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             VL AC  G       K++H+R    G +    + N L D+Y+K G +  A+ VFN I 
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V++  +I G SQ     E++ LF +M    +          +SA   +   + G++
Sbjct: 223 MKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQ 282

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + I+   H+  +V N ++  Y+RS ++  A +IF  +  +D  S+N+LI G    G 
Sbjct: 283 LHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGF 342

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D A+ LF  M+ D +  D ++  ++L+AC+  G + KG +         +    +    
Sbjct: 343 SDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGS 402

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           ++DL  +   +E A K       E +  +W  +L A   YG ++
Sbjct: 403 LLDLYSKCADVETAHKFFLTTETE-NIVLWNVMLVA---YGQLD 442



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 111/243 (45%), Gaps = 5/243 (2%)

Query: 40  LKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99
           ++ +  + E  + + + N + L   L  C     L     +H RI + G + +  L ++L
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWL---LEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSL 99

Query: 100 TDMYAKCGCLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
            D Y + G  + A  VF+  S R   S+N +I  +       +   LF  M   G+  + 
Sbjct: 100 VDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNG 159

Query: 159 VSFMGAISAC-ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
            +F G + AC     A    K++H  T      +   VAN ++D Y+++G I+ A K+F+
Sbjct: 160 YTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFN 219

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
           C+ +KD  +W  +I G    G  + AI LF  M    +   P    ++L+A +   L E 
Sbjct: 220 CICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFEL 279

Query: 278 GKK 280
           G++
Sbjct: 280 GEQ 282



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/200 (19%), Positives = 81/200 (40%), Gaps = 8/200 (4%)

Query: 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
           S+ + L + M   G++ +  +++  +  C    ++ +   +H    +        + +S+
Sbjct: 40  SKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSL 99

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
           +D Y R G    A K+FD    +   SWN +I  +           LF  M  +G+  + 
Sbjct: 100 VDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNG 159

Query: 260 VSYIAILTACSHGGLVEKGKKYFDEMQADS----VKPTEMHYACMVDLLGRAGLMEDAVK 315
            ++  +L AC  G +      Y  ++ + +       + +    ++DL  + G +E A K
Sbjct: 160 YTFAGVLKACVGGDI---AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKK 216

Query: 316 LIKNLPVEPDANIWGALLGA 335
           +  N     D   W A++  
Sbjct: 217 VF-NCICMKDIVTWVAMISG 235


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 143/417 (34%), Positives = 237/417 (56%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    +E+  +   +  +++V+WNA++  +A++    KAL   + M +     N +T
Sbjct: 389 MYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYIT 448

Query: 61  LTNVLPACA-RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           + +VL AC   G  L  GK +HA I+  G   D  + N+L  MYAKCG L+ +Q++FN +
Sbjct: 449 VVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL 508

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ +++N ++   +      E L L S+MR  G+  D  SF   +SA A LA +++G+
Sbjct: 509 DNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQ 568

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++HG+ ++       F+ N+  D Y++ G I    K+      +   SWN LI   G  G
Sbjct: 569 QLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHG 628

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
             +     F  M E G+    V+++++LTACSHGGLV+KG  Y+D +  D  ++P   H 
Sbjct: 629 YFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHC 688

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C++DLLGR+G + +A   I  +P++P+  +W +LL +C+I+GN++ G  AAE+L  L+P
Sbjct: 689 ICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEP 748

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +    Y+L SNM+A  G+W++   VR+ M  +  KK   CSWV+ +D+V  F + DR
Sbjct: 749 EDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDR 805



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 186/375 (49%), Gaps = 13/375 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA + R  EA+ +F  +  K+++SWN+++A+F  +   L AL L+  M    +  N VT
Sbjct: 288 MYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVT 347

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV-FNIS 119
            T+ L AC    F   G+ +H  ++  GL ++  + NAL  MY K G ++ ++ V   + 
Sbjct: 348 FTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP 407

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC---ANLAAIKQ 176
            RD V++N LI GY++  D  ++L+ F  MR+ G+  + ++ +  +SAC    +L  +++
Sbjct: 408 RRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL--LER 465

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK +H   +     +   V NS++  Y + G +  +  +F+ L  ++  +WN ++     
Sbjct: 466 GKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAH 525

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G  +  + L   MR  GV  D  S+   L+A +   ++E+G++          +     
Sbjct: 526 HGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFI 585

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANI--WGALLGACRIYGNV-ELGAWAAEHLF 353
           +    D+  + G + + VK+   LP   + ++  W  L+ A   +G   E+ A   E L 
Sbjct: 586 FNAAADMYSKCGEIGEVVKM---LPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLE 642

Query: 354 M-LKPQHCGYYILLS 367
           M +KP H  +  LL+
Sbjct: 643 MGIKPGHVTFVSLLT 657



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 168/337 (49%), Gaps = 7/337 (2%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A+Y+F  ++E++ +SWN++ A +AQN    ++ ++   M   ++  NS T++ +L     
Sbjct: 197 ANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGH 256

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
               + G+ IH  +++ G +  + + N L  MYA  G    A  VF  +  +D +S+N L
Sbjct: 257 VDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSL 316

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           +  +       ++L L   M   G   + V+F  A++AC      ++G+ +HG+ +   L
Sbjct: 317 MASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGL 376

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             +  + N+++  Y + G +  + ++   +P +D  +WN LI GY    + D A+  F+ 
Sbjct: 377 FYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQT 436

Query: 250 MREDGVGYDPVSYIAILTAC-SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
           MR +GV  + ++ +++L+AC   G L+E+GK     + +   +  E     ++ +  + G
Sbjct: 437 MRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCG 496

Query: 309 LMEDAVKLIKNLPVEPDANI--WGALLGACRIYGNVE 343
            +  +  L   L    + NI  W A+L A   +G+ E
Sbjct: 497 DLSSSQDLFNGL---DNRNIITWNAMLAANAHHGHGE 530



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 159/321 (49%), Gaps = 11/321 (3%)

Query: 21  KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR-GHFLRPGKE 79
           +N VSWN M++   +  L L+ ++  R+M      P+S  + +++ AC R G   R G +
Sbjct: 4   RNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQ 63

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSD 138
           +H  + + GL  D++++ A+  +Y   G ++ ++ VF  +  R+ VS+  L+VGYS   +
Sbjct: 64  VHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGE 123

Query: 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
             E + ++  MR  G+  +  S    IS+C  L     G++I G  ++  L + L V NS
Sbjct: 124 PEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENS 183

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
           ++      G +D AN IFD +  +D+ SWN++   Y   G ++ +  +F  MR     +D
Sbjct: 184 LISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRR---FHD 240

Query: 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR----AGLMEDAV 314
            V+   + T  S  G V+  +K+   +    VK       C+ + L R    AG   +A 
Sbjct: 241 EVNSTTVSTLLSVLGHVDH-QKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEAN 299

Query: 315 KLIKNLPVEPDANIWGALLGA 335
            + K +P + D   W +L+ +
Sbjct: 300 LVFKQMPTK-DLISWNSLMAS 319



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 155/323 (47%), Gaps = 2/323 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + ++N+VSW +++  ++      + + + + M       N  +++ V+ +C     
Sbjct: 99  VFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKD 158

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
              G++I  ++++ GL   L + N+L  M    G ++ A  +F+ +S RD +S+N +   
Sbjct: 159 ESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAA 218

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y+Q     ES  +FS MR    + +  +    +S   ++   K G+ IHG+ ++    + 
Sbjct: 219 YAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSV 278

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           + V N++L  Y  +GR   AN +F  +P KD  SWN+L+  +   G    A+ L  +M  
Sbjct: 279 VCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMIS 338

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
            G   + V++ + L AC      EKG+     +    +   ++    +V + G+ G M +
Sbjct: 339 SGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSE 398

Query: 313 AVKLIKNLPVEPDANIWGALLGA 335
           + +++  +P   D   W AL+G 
Sbjct: 399 SRRVLLQMP-RRDVVAWNALIGG 420



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 116/227 (51%), Gaps = 8/227 (3%)

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI-KQGKE 179
           R+EVS+N ++ G  +     E +  F +M  LG+K         ++AC    ++ ++G +
Sbjct: 4   RNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQ 63

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG   +  L + ++V+ +IL  Y   G +  + K+F+ +P ++  SW +L++GY   GE
Sbjct: 64  VHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGE 123

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK---GKKYFDEMQADSVKPTEMH 296
            +  I++++ MR +GVG +  S   ++++C   GL++    G++   ++    ++     
Sbjct: 124 PEEVIDIYKGMRGEGVGCNENSMSLVISSC---GLLKDESLGRQIIGQVVKSGLESKLAV 180

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
              ++ +LG  G ++ A  +   +  E D   W ++  A    G++E
Sbjct: 181 ENSLISMLGSMGNVDYANYIFDQMS-ERDTISWNSIAAAYAQNGHIE 226


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 142/447 (31%), Positives = 241/447 (53%), Gaps = 33/447 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA   R   A  +F  ++ +++V+WN M+  + +  L  +A +L  EM   N  P+ + 
Sbjct: 155 MYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMI 214

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L N++ AC R   +R  + I+  +I   +  D  L  AL  MYA  GC+++A+  F  +S
Sbjct: 215 LCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMS 274

Query: 120 FR-------------------------------DEVSYNILIVGYSQTSDCSESLSLFSE 148
            R                               D V +  +I  Y ++    E+L +F E
Sbjct: 275 VRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEE 334

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M   G+K DVVS    ISACANL  + + K +H       L + L + N++++ Y + G 
Sbjct: 335 MCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGG 394

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +D    +F+ +P ++  SW+++I    M GE   A++LF  M+++ V  + V+++ +L  
Sbjct: 395 LDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYG 454

Query: 269 CSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           CSH GLVE+GKK F  M  + ++ P   HY CMVDL GRA L+ +A+++I+++PV  +  
Sbjct: 455 CSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVV 514

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           IWG+L+ ACRI+G +ELG +AA+ +  L+P H G  +L+SN+YA   +W++   +R +M+
Sbjct: 515 IWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVME 574

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVNDR 414
            +   K  G S +    +  +F++ D+
Sbjct: 575 EKNVFKEKGLSRIDQNGKSHEFLIGDK 601



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 140/309 (45%), Gaps = 33/309 (10%)

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           +L A ++   L  G E+H    +     D F+     DMYA CG +N A+NVF+ +S RD
Sbjct: 117 ILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRD 176

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH- 181
            V++N +I  Y +     E+  LF EM+   +  D +     +SAC     ++  + I+ 
Sbjct: 177 VVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYE 236

Query: 182 -----GVTIRKHLHT-------------------------HLFVANSILDFYTRSGRIDL 211
                 V +  HL T                         +LFV+ +++  Y++ GR+D 
Sbjct: 237 FLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDD 296

Query: 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271
           A  IFD    KD   W T+I  Y        A+ +FE M   G+  D VS  ++++AC++
Sbjct: 297 AQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACAN 356

Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
            G+++K K     +  + ++        ++++  + G ++    + + +P   +   W +
Sbjct: 357 LGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNVVSWSS 415

Query: 332 LLGACRIYG 340
           ++ A  ++G
Sbjct: 416 MINALSMHG 424



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 2/247 (0%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI--SFRDEVSYNILIVGYSQ 135
           K++HA I+R  +N  L        + +    L+ A NVF+   S  + + +N  +   S+
Sbjct: 29  KQLHAHILRTVINHKLNSFLFNLSVSSSSINLSYALNVFSSIPSPPESIVFNPFLRDLSR 88

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
           +S+   ++  +  +R +G + D  SF+  + A + ++A+ +G E+HGV  +       FV
Sbjct: 89  SSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFV 148

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
               +D Y   GRI+ A  +FD +  +D  +WNT+I  Y   G VD A  LFE M++  V
Sbjct: 149 ETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNV 208

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
             D +    I++AC   G +   +  ++ +  + V+        +V +   AG M+ A +
Sbjct: 209 MPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMARE 268

Query: 316 LIKNLPV 322
             + + V
Sbjct: 269 FFRKMSV 275


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 154/415 (37%), Positives = 236/415 (56%), Gaps = 12/415 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+     EA  LF     +++ +W A+V+ +AQN +  +A ++   MP  N    +V+ 
Sbjct: 234 YARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERN----AVSW 289

Query: 62  TNVLPACARGHFLRPGKEIHARI-IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++ A  +   +   KE+   +  R   +++  LT      YA+ G L  A+ VF+ + 
Sbjct: 290 NAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTG-----YAQAGMLEEAKAVFDTMP 344

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+  ++  YSQ     E+L LF EM   G   +  +F   +S CA++AA++ G +
Sbjct: 345 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 404

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  IR       FV N++L  Y + G ++ A   F+ +  +D  SWNT+I GY   G 
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGF 464

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ +F+ MR      D ++ + +L ACSH GLVEKG  YF  M  D  V     HY 
Sbjct: 465 GKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYT 524

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLLGRAG + +A  L+K++P EPD+ +WGALLGA RI+ N ELG  AAE +F L+P+
Sbjct: 525 CMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPE 584

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + G Y+LLSN+YA +GKW +A K+R +M+ R  KK PG SW++ +++V  F   D
Sbjct: 585 NAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGD 639



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 156/339 (46%), Gaps = 36/339 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+ + R   A+ LF  I   +  S+N ++   A +     A  L  EMP+ +    +V +
Sbjct: 79  YSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMI 138

Query: 62  TN----VLPACARGHF-LRPGKE------IHARIIRKG------------LNFDLFLTNA 98
           ++     L + AR +F L P K+      + A  +R G              +D    NA
Sbjct: 139 SSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNA 198

Query: 99  LTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157
           L   Y + G ++ A+ +F+ +  RD VS+NI++ GY++  D  E+  LF    +     D
Sbjct: 199 LMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPV----RD 254

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
           V ++   +S  A    +++ + +      ++  +     N+++  Y +   +D A ++F+
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSW----NAMVAAYIQRRMMDEAKELFN 310

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            +P ++ ASWNT++ GY   G ++ A  +F+ M +     D VS+ A+L A S GG  E+
Sbjct: 311 MMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEE 366

Query: 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
             + F EM           +AC++        +E  ++L
Sbjct: 367 TLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQL 405



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 162/364 (44%), Gaps = 84/364 (23%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN-RLELKALQLVREMPIHNEFPNSVT 60
           + ++ R A+A  LF  +  ++  ++NAM+A ++ N RL L A  L R +P     P++ +
Sbjct: 48  HMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAA-SLFRAIP----RPDNYS 102

Query: 61  LTNVLPACARGHFLRPGKEIHARI-IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
              +L A A    L   + +   + +R  + +++ +++     +A  G ++LA++ F+++
Sbjct: 103 YNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISS-----HANHGLVSLARHYFDLA 157

Query: 120 -FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D VS+N ++  Y +     E+  LF+       + D +S+                 
Sbjct: 158 PEKDAVSWNGMLAAYVRNGRVEEARGLFNSR----TEWDAISW----------------- 196

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
                             N+++  Y + G++  A ++FD +P +D  SWN ++ GY   G
Sbjct: 197 ------------------NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRG 238

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEM-- 295
           ++  A  LF+A        D  ++ A+++  +  G++E+ ++ FD M + ++V    M  
Sbjct: 239 DMVEARRLFDA----APVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVA 294

Query: 296 ------------------------HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
                                    +  M+    +AG++E+A  +   +P + DA  W A
Sbjct: 295 AYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAA 353

Query: 332 LLGA 335
           +L A
Sbjct: 354 MLAA 357



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 141/335 (42%), Gaps = 52/335 (15%)

Query: 89  LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ------------ 135
           L  ++  +N     + + G +  A+ +F  +  R   +YN ++ GYS             
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 136 -------------------TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
                              +S  +++  LF EM +     D V++   IS+ AN   +  
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPV----RDSVTYNVMISSHANHGLVSL 149

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            +    +   K   +     N +L  Y R+GR++ A  +F+     D+ SWN L+ GY  
Sbjct: 150 ARHYFDLAPEKDAVSW----NGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQ 205

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G++  A  LF+ M     G D VS+  +++  +  G + + ++ FD      V      
Sbjct: 206 WGKMSEARELFDRM----PGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FT 257

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           +  +V    + G++E+A ++   +P E +A  W A++ A   Y    +   A E   M+ 
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNAMVAA---YIQRRMMDEAKELFNMMP 313

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
            ++   +  +   YA+AG  +EA  V + M  ++A
Sbjct: 314 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDA 348



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A   F  + E+++VSWN M+A +A++    +AL++   M   +  P+ +T
Sbjct: 427 MYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDIT 486

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF 91
           L  VL AC+           H+ ++ KG+++
Sbjct: 487 LVGVLAACS-----------HSGLVEKGISY 506


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 144/454 (31%), Positives = 244/454 (53%), Gaps = 50/454 (11%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  I E ++ SWN M   +++       + L  EM   N  P+  T   +     R
Sbjct: 67  ARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTR 126

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF---------- 120
              L+ G+E+H  +++ GL+ ++F  NAL +MY+ CG +++A+ +F++S           
Sbjct: 127 SVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAM 186

Query: 121 ---------------------------------------RDEVSYNILIVGYSQTSDCSE 141
                                                  RD VS+  +I GY + +   E
Sbjct: 187 ISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKE 246

Query: 142 SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201
           +L LF EM+   +K D  + +  ++ACA L A++ G+ I     +  +    FV N+++D
Sbjct: 247 ALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALID 306

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y + G +++A  IF+ LP +D  +W  +++G  + G  + A+N+F  M +  V  D V+
Sbjct: 307 MYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVT 366

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
           Y+ +L+AC+H G+V++GKK+F  M A   ++P   HY CMVDLLG+AG +++A ++IKN+
Sbjct: 367 YVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNM 426

Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
           P++P++ +WGALLGACRI+ + E+   A E +  L+P +   Y+L  N+YA   KWD+  
Sbjct: 427 PMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLR 486

Query: 381 KVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           ++R++M  R  KK PGCS ++    V +FV  D+
Sbjct: 487 ELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQ 520



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 76/175 (43%), Gaps = 6/175 (3%)

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRS--GRIDLANKIFDCLPVKDSASWNTLILGYG 235
           K+IH  TI+  +  +  + N IL F      G +  A ++FD +P     SWN +  GY 
Sbjct: 31  KQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYS 90

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
            +      ++L+  M E  V  D  +Y  +    +    ++ G++    +    +     
Sbjct: 91  RIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVF 150

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL-GACRIYGNVELGAWAA 349
            +  ++++    GL+ D  + I ++  + D   W A++ G  RI  +V   +W A
Sbjct: 151 AHNALINMYSLCGLI-DMARGIFDMSCKSDVVTWNAMISGYNRIKKDVI--SWTA 202



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 1/117 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F+ + +++  +W AMV   A N    +AL +  +M   +  P+ VT
Sbjct: 307 MYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVT 366

Query: 61  LTNVLPACARGHFLRPGKEIHARII-RKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
              VL AC     +  GK+  A +  R G+  ++     + D+  K G L  A  + 
Sbjct: 367 YVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEII 423


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 147/418 (35%), Positives = 238/418 (56%), Gaps = 4/418 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     EA  +F +  ++N ++W+AMV  ++QN   L+A++L   M      P+  T
Sbjct: 265 MYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYT 324

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  VL AC+   +L  GK++H+ +++ G    LF T AL DMYAK GCL  A+  F+ + 
Sbjct: 325 IVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQ 384

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD   +  LI GY Q SD  E+L L+  M+  G+  +  +    + AC++LA ++ GK+
Sbjct: 385 ERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQ 444

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG TI+      + + +++   Y++ G ++  N +F   P KD  SWN +I G    G+
Sbjct: 445 VHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQ 504

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV--KPTEMHY 297
            D A+ LFE M  +G+  D V+++ I++ACSH G VE+G  YF+ M +D +   P   HY
Sbjct: 505 GDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFN-MMSDQIGLDPKVDHY 563

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACMVDLL RAG +++A + I++  ++    +W  LL AC+ +G  ELG +A E L  L  
Sbjct: 564 ACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGS 623

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           +    Y+ LS +Y   G+  +  +V + M++    K  GCSW++ +++   FVV D M
Sbjct: 624 RESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTM 681



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 175/338 (51%), Gaps = 8/338 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFA-QNRLE--LKALQL-VREMPIHNEFP 56
           MY K+    +   +F  + E+N  +W+ MV+ +A + R+E  +K   L +RE    ++  
Sbjct: 162 MYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSD-- 219

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           +    T VL + A   ++  G++IH   I+ GL   + L+NAL  MY+KC  LN A  +F
Sbjct: 220 SDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMF 279

Query: 117 NISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           + S  R+ ++++ ++ GYSQ  +  E++ LFS M   G+K    + +G ++AC+++  ++
Sbjct: 280 DSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLE 339

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           +GK++H   ++     HLF   +++D Y ++G +  A K FDCL  +D A W +LI GY 
Sbjct: 340 EGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYV 399

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
              + + A+ L+  M+  G+  +  +  ++L ACS    +E GK+               
Sbjct: 400 QNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVP 459

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
             + +  +  + G +ED   + +  P   D   W A++
Sbjct: 460 IGSALSTMYSKCGSLEDGNLVFRRTP-NKDVVSWNAMI 496



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 168/339 (49%), Gaps = 9/339 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN---RLELKALQLVREMPIHNEFPNS 58
           YAK  + A+A  +F+ I  K++VSWN+++  ++QN         +QL REM   +  PN+
Sbjct: 59  YAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNA 118

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
            TL  +  A +       G++ HA +++     D+++  +L  MY K G +     VF  
Sbjct: 119 YTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAY 178

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESL---SLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           +  R+  +++ ++ GY+      E++   +LF   +  G   D V F   +S+ A    +
Sbjct: 179 MPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYV-FTAVLSSLAATIYV 237

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G++IH +TI+  L   + ++N+++  Y++   ++ A K+FD    ++S +W+ ++ GY
Sbjct: 238 GLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGY 297

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              GE   A+ LF  M   G+     + + +L ACS    +E+GK+    +     +   
Sbjct: 298 SQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHL 357

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                +VD+  +AG + DA K    L  E D  +W +L+
Sbjct: 358 FATTALVDMYAKAGCLADARKGFDCLQ-ERDVALWTSLI 395



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 185/412 (44%), Gaps = 57/412 (13%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P++ TL   L   ++   L  G+ +H +IIR G +  +   N L + YAKCG L  A ++
Sbjct: 12  PHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSI 71

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSES---LSLFSEMRLLGMKHDVVSFMGAISACANL 171
           FN I  +D VS+N LI GYSQ    S S   + LF EMR   +  +  +  G   A ++L
Sbjct: 72  FNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSL 131

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
            +   G++ H + ++      ++V  S++  Y ++G ++   K+F  +P +++ +W+T++
Sbjct: 132 QSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMV 191

Query: 232 LGYGMLGEVDTAI---NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK--------- 279
            GY   G V+ AI   NLF   +E+G   D V + A+L++ +    V  G+         
Sbjct: 192 SGYATRGRVEEAIKVFNLFLREKEEGSDSDYV-FTAVLSSLAATIYVGLGRQIHCITIKN 250

Query: 280 --------------------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
                                     K FD     S     + ++ MV    + G   +A
Sbjct: 251 GLLGFVALSNALVTMYSKCESLNEACKMFD----SSGDRNSITWSAMVTGYSQNGESLEA 306

Query: 314 VKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQHCGYYILLS 367
           VKL   +    ++P       +L AC     +E G     H F+LK    +H      L 
Sbjct: 307 VKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQL--HSFLLKLGFERHLFATTALV 364

Query: 368 NMYAEAGKWDEASKVRELMKSREAK--KNPGCSWVQTRDEVQDFVVNDRMKT 417
           +MYA+AG   +A K  + ++ R+     +    +VQ  D  +  ++  RMKT
Sbjct: 365 DMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKT 416


>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
 gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
          Length = 581

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 146/419 (34%), Positives = 239/419 (57%), Gaps = 5/419 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEK--NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY+  S PA A  +  +  +   + VSWN +++ + +  +  KALQ   +M       + 
Sbjct: 137 MYSSCSYPATARQVLDSAPQGACDTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDD 196

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           VTL N L A A+   ++ G+  H+ ++  G   + ++ ++L  MYAKCG +  A+ VF+ 
Sbjct: 197 VTLLNALVASAKAGKVKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHG 256

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  R+ V +  +I GY+Q     E+++LF +M++ GMK D  +    +S+CA + A+  G
Sbjct: 257 MHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLG 316

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + +H       L   L V NS++D Y++ G I+ A++IF  L  +D  SW  +I+G+ + 
Sbjct: 317 RYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVN 376

Query: 238 GEVDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPTEM 295
           G    A++LF  M  +G V  + V+++ +LT+CSHGGLVE+G  YF  M     + P   
Sbjct: 377 GLCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIE 436

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY CMVDLLGRA L+ +A + IKN+P+ PD  +W +LL ACR  G V L  + AE +  L
Sbjct: 437 HYGCMVDLLGRAKLLTEAEQFIKNMPIAPDVVVWRSLLFACRACGEVGLAEFVAERILEL 496

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +P+ C  ++LLSN+YA   +W + +++R  M +    K PGCS+++    V +F   D 
Sbjct: 497 EPKKCAGHVLLSNVYATTSRWVDVNELRTSMDNSRMSKQPGCSFIEVDGCVHEFFAGDE 555



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 115/223 (51%), Gaps = 3/223 (1%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           +L     A +R   +  G ++H+  ++ GL  D F+ N+L +MY+ C     A+ V + +
Sbjct: 95  SLNIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATARQVLDSA 154

Query: 120 FR---DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +   D VS+N +I GY +    +++L  F +M    +  D V+ + A+ A A    +K 
Sbjct: 155 PQGACDTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKV 214

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+  H + +      + ++ +S++  Y + G ++ A K+F  +  ++   W ++I GY  
Sbjct: 215 GRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQ 274

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
           LG+   A+NLF  M+  G+  D  +   ++++C+  G ++ G+
Sbjct: 275 LGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGR 317



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 8/186 (4%)

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP--V 221
           A SA + L ++  G ++H ++++  L +  FV NS+++ Y+       A ++ D  P   
Sbjct: 99  AFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATARQVLDSAPQGA 158

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
            D+ SWNT+I GY   G  + A+  F  M ++ V  D V+ +  L A +  G V+ G+  
Sbjct: 159 CDTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLC 218

Query: 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
              +  +         + ++ +  + GL+EDA K+   +  E +   W ++     I G 
Sbjct: 219 HSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMH-ERNVVCWTSM-----ISGY 272

Query: 342 VELGAW 347
            +LG +
Sbjct: 273 TQLGKF 278


>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
          Length = 1111

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 141/403 (34%), Positives = 241/403 (59%), Gaps = 6/403 (1%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP---IHNEFPN 57
            MY K      A   F  + E+N  +WN MV+ + +  L +K + L REM    I ++  +
Sbjct: 712  MYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYGKIGLIMKCIGLFREMQCLGIESDSNS 771

Query: 58   SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             V++ +        H  R    IH  +I+  ++ ++ + N+L DMY K G L +A+ +F 
Sbjct: 772  LVSVVSSCSQLGATHLARS---IHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFC 828

Query: 118  ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
               RD V++N LI  Y+     +E+LSL+ +M L  +K +  + +  +SAC++LA++++G
Sbjct: 829  RIPRDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVXVLSACSHLASLEEG 888

Query: 178  KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            +++H          +L +A +++D Y + G+++ + +IF+ +  +D  +WN +I GYGM 
Sbjct: 889  EKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMH 948

Query: 238  GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
            G+  +AI  F+ M E     + ++++A+L+AC+H GLV++GK  F +MQ  SV P   HY
Sbjct: 949  GDARSAIEXFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKMQDYSVAPNLKHY 1008

Query: 298  ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            ACMVDLLGR+G +++A  L+ ++P+ PD  +WGALL +C+I+  +E+G   A+H      
Sbjct: 1009 ACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGALLSSCKIHNEIEMGIRIAKHAIXSDV 1068

Query: 358  QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
            ++ GYY+++SNMY+  GKW+EA K R +MK R  +K  G S V
Sbjct: 1069 ENDGYYVMISNMYSSIGKWEEAEKARGIMKERGVRKKTGWSAV 1111



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 179/342 (52%), Gaps = 3/342 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K   P EA   F  +  K+I+SW +M++ +++     + + +  EM +   +P+ + 
Sbjct: 611 MYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIV 670

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           ++ +L + +    +   K  H  IIR+    D  + NAL  MY K G L LA+  F  ++
Sbjct: 671 ISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVN 730

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++  ++N+++ GY +     + + LF EM+ LG++ D  S +  +S+C+ L A    + 
Sbjct: 731 EQNFEAWNLMVSGYGKIGLIMKCIGLFREMQCLGIESDSNSLVSVVSSCSQLGATHLARS 790

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+  +  ++ V NS++D Y +SG + +A +IF  +P +D  +WNTLI  Y   G 
Sbjct: 791 IHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSYAHCGH 849

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A++L++ M  + +  +  + + +L+ACSH   +E+G+K  + +     +        
Sbjct: 850 FAEALSLYDKMVLEDLKPNSATLVXVLSACSHLASLEEGEKVHNYINGGKFEFNLSIATA 909

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           ++D+  + G +E + ++  ++  E D   W  ++    ++G+
Sbjct: 910 LIDMYAKCGQLEKSREIFNSMH-ERDVITWNVMISGYGMHGD 950



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 146/303 (48%), Gaps = 3/303 (0%)

Query: 34  AQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDL 93
            ++++ L+ L  +  +    E PN  TL     AC     L  G+ +H  +++ G+++  
Sbjct: 543 GESKMGLECLCEMHRIGGDGERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQ 602

Query: 94  FLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL 152
            + ++L  MY+KCG    A   F  +  +D +S+  +I  YS+    +E + +F EM + 
Sbjct: 603 VVQSSLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVS 662

Query: 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212
           G+  D +     +S+ +N   + + K  HG+ IR+H      V N++L  Y + G + LA
Sbjct: 663 GIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLA 722

Query: 213 NKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272
            K F  +  ++  +WN ++ GYG +G +   I LF  M+  G+  D  S ++++++CS  
Sbjct: 723 EKFFGRVNEQNFEAWNLMVSGYGKIGLIMKCIGLFREMQCLGIESDSNSLVSVVSSCSQL 782

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
           G     +     M  + +         ++D+ G++G +  A ++   +P   D   W  L
Sbjct: 783 GATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIP--RDIVTWNTL 840

Query: 333 LGA 335
           + +
Sbjct: 841 ISS 843



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 47/260 (18%), Positives = 110/260 (42%), Gaps = 14/260 (5%)

Query: 2   YAKSSRPAEASYLFHNIAE----KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           Y ++    +A  L   ++E    K  + +N M++ +  +    K   +++E+   N  P+
Sbjct: 167 YVQNKVSEKAEALMEKMSECGFLKCPLPYNHMISLYISDGQLEKVPGMIQELK-KNTSPD 225

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
            VT    L  CA  + +   +++   I +  ++ D    ++LT++Y K G L+ A    N
Sbjct: 226 VVTYNLWLTVCASQNDVETAEKVLLEIKKAKIDPDWVTYSSLTNLYIKKGLLDKAATTLN 285

Query: 118 -----ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
                 S +  ++Y+ LI  ++   D      ++ +++ +  K +   +   IS+   L 
Sbjct: 286 EMEKRTSRKGRIAYSSLISLHTNMQDKDGVHRIWKKLKSIFHKMNDAEYTCMISSLVKLG 345

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK----DSASWN 228
             ++ + ++             V N +L  Y     +++A K ++ +  +       +W 
Sbjct: 346 EFEEAENLYSEWTSVSPTGDSRVPNILLAAYINKNEMEMAEKFYNQMVERGITPSYTTWE 405

Query: 229 TLILGYGMLGEVDTAINLFE 248
            L  GY    +++  ++ FE
Sbjct: 406 LLTWGYLKKKQMEKVLDYFE 425


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 155/438 (35%), Positives = 245/438 (55%), Gaps = 33/438 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y + ++  +A  LF  + EK+ VSW AM+  + +    L+A +++  MP    + N    
Sbjct: 274 YVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMP----YKNIAAQ 329

Query: 62  TNVLPACARGHFLRPGKEIHARI-IRKGLNFDLFLT------------------------ 96
           T ++    +   +    EI ++I +R  + ++  +T                        
Sbjct: 330 TAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMV 389

Query: 97  --NALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
             N +   YA+ G ++ A  +FN +  R+ VS+N LI GY Q     E+L+ F  M+  G
Sbjct: 390 SWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQG 449

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
            K D  + +  + A ANLAA+  G ++H +TI+      LFV N+IL  Y +SGR+  A 
Sbjct: 450 EKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAE 509

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
            +F  +  KD  SWN+LI GY + G    A+ LFE M   G+  D V++  +L+AC+HGG
Sbjct: 510 NVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGG 569

Query: 274 LVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
            V++G   F  M +  S+KP   HYAC+++LLGR G +E+AV++++ +     A IWGAL
Sbjct: 570 FVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGAL 629

Query: 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392
           L ACRI+ N+EL  ++AE L  L+PQ+   Y+LLSNM+AEAG+WD   +VR LMK  +A+
Sbjct: 630 LWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAE 689

Query: 393 KNPGCSWVQTRDEVQDFV 410
           K PGCSW++  +++  F+
Sbjct: 690 KQPGCSWIEIDNQLHCFL 707



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 180/393 (45%), Gaps = 65/393 (16%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
            +S R  EA  +F  + E+NIV++N+M++ +A+N     A +L   MP  N     V+  
Sbjct: 26  GRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRN----LVSWN 81

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI--SF 120
           +++        +     +  R+ ++    D++    +   Y + G L  A+ +FN+    
Sbjct: 82  SMIAGYLHNELVEDAARLFDRMFKR----DIYSWTLMITCYTRIGELEKARELFNLLPDK 137

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D V  N LI GY++     E+  LF EM    +  +VVS+                   
Sbjct: 138 QDTVCRNALIAGYAKKRLFREAKKLFDEM----LVKNVVSW------------------- 174

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
                           NSIL  YT++G++ L  + F+ +  ++  SWN ++ GY  +G++
Sbjct: 175 ----------------NSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDL 218

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           D+A   F+ +    V    VS++ +L+  +H G + + +  F+EM   ++    + +  M
Sbjct: 219 DSAWMFFKKIPTPNV----VSWVTMLSGFAHYGRMTEARNLFNEMPTKNL----VSWNAM 270

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAW--AAEHLFMLKPQ 358
           +    R   ++DA KL   +P E D+  W A+     I G V +G    A E L ++  +
Sbjct: 271 IGAYVRENQIDDAYKLFMEMP-EKDSVSWTAM-----INGYVRVGKLLQAREILNLMPYK 324

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
           +      + N Y ++G+ DEA+++   +  R++
Sbjct: 325 NIAAQTAMINGYLQSGRMDEANEIFSQISVRDS 357



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 46/77 (59%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS R  EA  +F  I  K++VSWN+++A +A N    +A++L   MP+    P+ VT
Sbjct: 498 MYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVT 557

Query: 61  LTNVLPACARGHFLRPG 77
            T +L AC  G F+  G
Sbjct: 558 FTGLLSACNHGGFVDQG 574



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 19/163 (11%)

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
           +++F  N  +    RSGRI+ A  +F  +  ++  ++N++I  Y   G +  A  LF+ M
Sbjct: 13  SYVFTQNLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLM 72

Query: 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
            +  +    VS+ +++    H  LVE   + FD M     K     +  M+    R G +
Sbjct: 73  PQRNL----VSWNSMIAGYLHNELVEDAARLFDRM----FKRDIYSWTLMITCYTRIGEL 124

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
           E A +L   LP + D          CR   N  +  +A + LF
Sbjct: 125 EKARELFNLLPDKQDT--------VCR---NALIAGYAKKRLF 156


>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
 gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
 gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
          Length = 620

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 147/417 (35%), Positives = 244/417 (58%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +Y+    P  A  +F+ I  +++VSWNAM+  + +  +  +  +++R+M       PN+V
Sbjct: 172 IYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAV 231

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL  VL AC     L  G+ +       G+  D  + +AL  MY KCG +  A+ VF+ I
Sbjct: 232 TLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSI 291

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D V++N +I GY+Q    +E++SLF  M+  G+  D ++  G +SAC+ + A++ G 
Sbjct: 292 IDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGS 351

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+ G    + L+ +++V  +++D Y + G +D A ++F  +  K+ ASWN LI G    G
Sbjct: 352 ELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNG 411

Query: 239 EVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           + D AI  FE MR EDG+  D +++I +L+AC H GLV+ GK++F+ + ++  + P   H
Sbjct: 412 QGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEH 471

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y+CMVD L R+G +E+    I+ +P + DA + GALL ACR   NVE+G      +  L+
Sbjct: 472 YSCMVDPLARSGHLEEVWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLE 531

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P +   Y++ S +YA +G+ D+++K+R LM+ R   K PGCSWV+   +V +F   D
Sbjct: 532 PTNSWNYVVSSKIYASSGRLDDSAKMRGLMRERGVNKTPGCSWVEISGKVLEFYAGD 588



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 40/247 (16%)

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H +  +  L++H    +S++  Y+       A K+F+ +P +D  SWN ++  YG +G  
Sbjct: 151 HALLEKIDLNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMN 210

Query: 241 DTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDE------MQADSVKPT 293
                +   M +DG V  + V+   +L AC   G +  G ++ +E      M+ DS+  +
Sbjct: 211 GEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLG-RWVEEWSKSAGMETDSLVGS 269

Query: 294 E---MHYAC-----------------------MVDLLGRAGLMEDAVKLIKNLP---VEP 324
               M+  C                       M+    + G+  +A+ L  N+    V P
Sbjct: 270 ALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCP 329

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWDEASKV 382
           D      +L AC   G +ELG+   +     +  +   Y+   L +MYA+ G  D+A +V
Sbjct: 330 DKITLAGVLSACSAVGALELGS-ELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEV 388

Query: 383 RELMKSR 389
              M+ +
Sbjct: 389 FRKMRCK 395


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 158/421 (37%), Positives = 250/421 (59%), Gaps = 10/421 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE------- 54
           YAK S    A  +F  +    I  +NAM++ ++ N   L A+ L R+M    E       
Sbjct: 99  YAKCSLHHHARKVFDEMPNPTIC-YNAMISGYSFNSKPLHAVCLFRKMRREEEDGLDVDV 157

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
             N+VTL +++  C+    L  G  +H   +R G   DL + N+L  MY KCG + LA+ 
Sbjct: 158 NVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARK 217

Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           VF+ +  RD +++N +I GY+Q       L ++SEM+L G+  D V+ +G +SACANL A
Sbjct: 218 VFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSADAVTLLGVMSACANLGA 277

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
              G+E+     R+    + F+ N++++ Y R G +  A ++FD    K   SW  +I G
Sbjct: 278 QGIGREVEREIERRGFGCNPFLRNALVNMYARCGNLTRAREVFDRSGEKSVVSWTAIIGG 337

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKP 292
           YG+ G  + A+ LF+ M E  V  D   ++++L+ACSH GL ++G +YF EM+    ++P
Sbjct: 338 YGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSACSHAGLTDRGLEYFKEMERKYGLQP 397

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
              HY+C+VDLLGRAG +E+AV LIK++ V+PD  +WGALLGAC+I+ N E+   A +H+
Sbjct: 398 GPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVWGALLGACKIHKNAEIAELAFQHV 457

Query: 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVN 412
             L+P + GYY+LLSN+Y +A   +  S+VR +M+ R+ +K+PG S+V+ + ++  F   
Sbjct: 458 VELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMRERKLRKDPGYSYVEYKGKMNLFYSG 517

Query: 413 D 413
           D
Sbjct: 518 D 518



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 132/257 (51%), Gaps = 7/257 (2%)

Query: 24  VSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHAR 83
            +WN  +   ++ R   +AL L R M   + FPN+ T   +L +CA         ++HA 
Sbjct: 20  TAWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAH 79

Query: 84  IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESL 143
           +IR G   D +  ++L + YAKC   + A+ VF+      + YN +I GYS  S    ++
Sbjct: 80  VIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPNPTICYNAMISGYSFNSKPLHAV 139

Query: 144 SLFSEMRLL---GMKHDV----VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
            LF +MR     G+  DV    V+ +  +S C+    +  G  +HG  +R    T L VA
Sbjct: 140 CLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVA 199

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           NS++  Y + G ++LA K+FD + V+D  +WN +I GY   G     + ++  M+  GV 
Sbjct: 200 NSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVS 259

Query: 257 YDPVSYIAILTACSHGG 273
            D V+ + +++AC++ G
Sbjct: 260 ADAVTLLGVMSACANLG 276



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 118/234 (50%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  +  +++++WNAM++ +AQN      L++  EM +     ++VT
Sbjct: 205 MYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSADAVT 264

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L  V+ ACA       G+E+   I R+G   + FL NAL +MYA+CG L  A+ VF+ S 
Sbjct: 265 LLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCGNLTRAREVFDRSG 324

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS+  +I GY        +L LF EM    ++ D   F+  +SAC++     +G E
Sbjct: 325 EKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSACSHAGLTDRGLE 384

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
                 RK+ L       + ++D   R+GR++ A  +   + VK D A W  L+
Sbjct: 385 YFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVWGALL 438


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 135/416 (32%), Positives = 240/416 (57%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     EA  +F  +AE + +S+NAM+  +++NR   +A+ + + M   +  P+ +T
Sbjct: 366 MYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLT 425

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++L   +    +   K+IH  II+ G + DL+  +AL D+Y+KC  +N A+ VFN + 
Sbjct: 426 FVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLH 485

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           ++D V +N +I G++Q     E++ LF+++ L GM  +  +F+  ++  + LA++  G++
Sbjct: 486 YKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQ 545

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   I+  +     V+N+++D Y + G I     +F+    +D   WN++I  Y   G 
Sbjct: 546 FHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMITTYAQHGH 605

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A+ +F  M E  V  + V+++ +L+AC+H G V +G  +F+ M+++  ++P   HYA
Sbjct: 606 AEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKSNYDIEPGIEHYA 665

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            +V+L GR+G +  A + I+ +P++P A +W +LL AC ++GN E+G +AAE   +  P 
Sbjct: 666 SVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAEIGRYAAEMALLADPT 725

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G Y+LLSN+YA  G W +   +R+ M S    K  GCSW++   EV  F+V  R
Sbjct: 726 DSGPYVLLSNIYASKGLWADVHNLRQQMDSSGTVKETGCSWIEVTKEVHTFIVRGR 781



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 169/334 (50%), Gaps = 2/334 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK     EA  +FH +  +  V+WN ++  +AQ      AL+L   M I    P+   
Sbjct: 164 LYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFV 223

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L + + AC+   FL  G++IH    R     D  + N L D+Y KC  L+ A+ +F+ + 
Sbjct: 224 LASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCME 283

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           +R+ VS+  +I GY Q S  +E++++F  M   G + D  +    +++C +LAAI QG++
Sbjct: 284 YRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQ 343

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+  L    +V N+++D Y +   +  A  +FD L   D+ S+N +I GY    +
Sbjct: 344 IHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRD 403

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +  A+N+F+ MR   +    ++++++L   S    +E  K+    +            + 
Sbjct: 404 LAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASA 463

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           ++D+  +  L+ DA K + N+    D  IW +++
Sbjct: 464 LIDVYSKCSLVNDA-KTVFNMLHYKDMVIWNSMI 496



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 170/334 (50%), Gaps = 3/334 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL-VREMPIHNEFPNSVT 60
           Y+   R  +A +LF  +  +N+VSW ++++ + Q+  +  A+ L V       E PN   
Sbjct: 63  YSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFL 122

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +VL AC +   +  G+++H   ++  L+ ++++  AL ++YAK GC++ A  VF+ + 
Sbjct: 123 LASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALP 182

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  V++N +I GY+Q      +L LF  M + G++ D      A+SAC+ L  ++ G++
Sbjct: 183 VRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQ 242

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG   R    T   V N ++D Y +  R+  A K+FDC+  ++  SW T+I GY     
Sbjct: 243 IHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSF 302

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              AI +F  M + G   D  +  +IL +C     + +G++    +    ++  E     
Sbjct: 303 NAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNA 362

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           ++D+  +   + +A  +   L  E DA  + A++
Sbjct: 363 LIDMYAKCEHLTEARAVFDAL-AEDDAISYNAMI 395



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 129/263 (49%), Gaps = 7/263 (2%)

Query: 60  TLTNVLPAC---ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           +L  VL +C         R    IHAR    G   DLFLTN L   Y+  G L  A+++F
Sbjct: 17  SLARVLLSCLPTGGDRLRRLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLF 76

Query: 117 N-ISFRDEVSYNILIVGYSQ--TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           + +  R+ VS+  +I  Y+Q    DC+ SL +  +     + ++ +     + AC    A
Sbjct: 77  DRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFL-LASVLRACTQSKA 135

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           +  G+++HG+ ++  L  +++V  ++++ Y + G +D A  +F  LPV+   +WNT+I G
Sbjct: 136 VSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITG 195

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
           Y  +G    A+ LF+ M  +GV  D     + ++ACS  G +E G++        + +  
Sbjct: 196 YAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETD 255

Query: 294 EMHYACMVDLLGRAGLMEDAVKL 316
                 ++DL  +   +  A KL
Sbjct: 256 TSVINVLIDLYCKCSRLSAARKL 278



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 7/160 (4%)

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           LF+ N +L  Y+  GR+  A  +FD +P ++  SW ++I  Y   G  D AI+LF A ++
Sbjct: 53  LFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQK 112

Query: 253 DGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
                 P  ++  ++L AC+    V  G++         +         +++L  + G M
Sbjct: 113 ASCEV-PNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCM 171

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
           ++A+ +   LPV      W  ++     Y  +  G  A E
Sbjct: 172 DEAMLVFHALPVRTPVT-WNTVITG---YAQIGCGGVALE 207


>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 145/417 (34%), Positives = 245/417 (58%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSV 59
           MY+   RP  A  +F  I  +++VSWN+M+  +    ++  A ++ R M      P N+V
Sbjct: 175 MYSNLGRPRAARRVFDGILRRDVVSWNSMIKAYQAAGMKDDAARMFRAMVAEGAVPPNAV 234

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T+  VL AC     L  G+ +   +   G+     + +AL  MY KCG +  A+ VF+ I
Sbjct: 235 TVAVVLAACRDAGDLALGRWLEEWVKSVGMEVGSLVGSALVGMYEKCGEMAEARRVFDAI 294

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + +D V++N LI GY+Q     E++SLF  MR  G + D ++ +G +SACA + A++ G 
Sbjct: 295 AHKDNVAWNALITGYAQNGMSKEAISLFHSMRQAGARPDKITLVGVLSACAAVGALELGT 354

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+    +++  +++++V  +++D Y++ G +  A ++F+ LP K+ ASWN LI G    G
Sbjct: 355 ELDRYALQRGFYSNVYVGTALVDMYSKCGDLTRAIQVFEKLPCKNEASWNALICGLAFNG 414

Query: 239 EVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
               AI  FE MR ++G+  D +++I +L+AC H GL++ G+++FD + ++  + P   H
Sbjct: 415 RGQEAIRQFELMRKQEGLRPDDITFIGVLSACVHAGLLKDGRRWFDSLTSEFQIIPKIEH 474

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y+CMVDLL RAG +E+A   I+ +P +PDA + GALL ACR   NVE+       + +L+
Sbjct: 475 YSCMVDLLARAGHLEEAWDFIEKIPGKPDAVMLGALLAACRKCKNVEVSVRVINKIMLLE 534

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P +   Y++ S +YA + + D+++++R LM+ R   K PGCSW++    V +F   D
Sbjct: 535 PSNSWNYVVSSKIYASSDRLDDSARMRGLMRERGVSKIPGCSWIEVSGRVLEFYAGD 591



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 144/311 (46%), Gaps = 4/311 (1%)

Query: 25  SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARI 84
           S+N  +  FA +R     LQL   M      P++ TL  +L A AR          HA +
Sbjct: 99  SFNVALRFFAASRPR-TTLQLSLRMLRAALRPDAYTLPFLLLAAARCPAPAFAASAHALL 157

Query: 85  IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESL 143
            + GL+      ++L  MY+  G    A+ VF+ I  RD VS+N +I  Y       ++ 
Sbjct: 158 QKLGLHNHDHTVHSLVTMYSNLGRPRAARRVFDGILRRDVVSWNSMIKAYQAAGMKDDAA 217

Query: 144 SLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
            +F  M   G +  + V+    ++AC +   +  G+ +        +     V ++++  
Sbjct: 218 RMFRAMVAEGAVPPNAVTVAVVLAACRDAGDLALGRWLEEWVKSVGMEVGSLVGSALVGM 277

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y + G +  A ++FD +  KD+ +WN LI GY   G    AI+LF +MR+ G   D ++ 
Sbjct: 278 YEKCGEMAEARRVFDAIAHKDNVAWNALITGYAQNGMSKEAISLFHSMRQAGARPDKITL 337

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
           + +L+AC+  G +E G +                   +VD+  + G +  A+++ + LP 
Sbjct: 338 VGVLSACAAVGALELGTELDRYALQRGFYSNVYVGTALVDMYSKCGDLTRAIQVFEKLPC 397

Query: 323 EPDANIWGALL 333
           + +A+ W AL+
Sbjct: 398 KNEAS-WNALI 407


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 152/415 (36%), Positives = 239/415 (57%), Gaps = 3/415 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN-EFPNSVT 60
           Y K     +A  LF  +  ++  SW A+++   Q+    +AL+L R M  H+    N  T
Sbjct: 194 YVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCT 253

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +++ L A A    L  GK+IH  I+R GL+ D  +  +L DMY KCG +  A+ +F+ + 
Sbjct: 254 ISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKME 313

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  +I  Y +     E  +LF  +    +  +  +F G ++ACA+LAA   GK+
Sbjct: 314 ERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQ 373

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   +R    +    A++++  Y++ G I+ A  +F+ LP  D  SW +L++GY   G+
Sbjct: 374 IHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQ 433

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
            D A++ FE + + G   D +++I +L+AC+H GLV+KG +YF  + +   +  T  HYA
Sbjct: 434 HDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYA 493

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C++DLL RAG   +A  +I  +P++PD  IW ALLG CRI+GN+EL   AA+ LF ++P+
Sbjct: 494 CIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPE 553

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +   Y+ L+N+YA AG   E + +RE M SR   K PG SW++ R EV  F V D
Sbjct: 554 NPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGD 608



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 141/283 (49%), Gaps = 16/283 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA Y+F  + E+++VSW  M+  + +N    +   L R +   N  PN  T
Sbjct: 295 MYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFT 354

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLT--NALTDMYAKCGCLNLAQNVFNI 118
              VL ACA       GK+IHA ++R G  FD F +  +AL  MY+KCG +  A++VF I
Sbjct: 355 FAGVLNACADLAAEDLGKQIHAYMVRVG--FDSFSSAASALVHMYSKCGDIENAKSVFEI 412

Query: 119 SFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
             + D  S+  L+VGY+Q     ++L  F  +   G K D ++F+G +SACA+   + +G
Sbjct: 413 LPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKG 472

Query: 178 KE-IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYG 235
            E  H +  +  L   +     I+D   R+G+   A  I + +P+K D   W  L+ G  
Sbjct: 473 LEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCR 532

Query: 236 MLGEVD----TAINLFEAMREDGVGYDPVSYIAILTACSHGGL 274
           + G ++     A +LFE   E     +P +Y+ +    +  G+
Sbjct: 533 IHGNLELAKRAAKSLFEIEPE-----NPATYVTLANIYASAGM 570



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 150/337 (44%), Gaps = 48/337 (14%)

Query: 34  AQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDL 93
            Q+RL  +A+QL+  +    E P +     +L  C +   L+ GK++HA I   G +  L
Sbjct: 100 GQSRLR-EAVQLLYRI----EKPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SIGL 153

Query: 94  FLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL 152
           +++N L DMYAKCG L  A+ VF+ +  RD  S+NI+I GY +  +  ++ +LF +M   
Sbjct: 154 YISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMP-- 211

Query: 153 GMKHDVVSFMGAISACAN------------------------------------LAAIKQ 176
               D  S+   IS C                                      + ++  
Sbjct: 212 --NRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHM 269

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK+IHG  +R  L +   V  S+LD Y + G I+ A  IFD +  +D  SW T+I  Y  
Sbjct: 270 GKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLK 329

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G  +    LF  +    +  +  ++  +L AC+     + GK+    M           
Sbjct: 330 NGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSA 389

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            + +V +  + G +E+A  + + LP +PD   W +LL
Sbjct: 390 ASALVHMYSKCGDIENAKSVFEILP-QPDLFSWTSLL 425


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 243/451 (53%), Gaps = 46/451 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A   F  + E+++VSWNAM++ +AQN L  + L+L  EM      P+  T 
Sbjct: 204 YAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTW 263

Query: 62  TNVLPACARGHFLRPGKEIHARIIR----KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             V+ AC+     R    + A ++R    K +  + F+  AL DMYAKCG +  A+ +F+
Sbjct: 264 VTVISACSS----RGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFD 319

Query: 118 ---------------------------------ISFRDEVSYNILIVGYSQTSDCSESLS 144
                                            +  R+ V++N +I GY+Q    + ++ 
Sbjct: 320 ELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIE 379

Query: 145 LFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203
           LF EM     +  D V+ +  ISAC +L A++ G  +        +   +   N+++  Y
Sbjct: 380 LFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMY 439

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
           +R G ++ A ++F  +  +D  S+NTLI G+   G    AINL   M+E G+  D V++I
Sbjct: 440 SRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFI 499

Query: 264 AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
            +LTACSH GL+E+G+K F+ ++     P   HYACMVDLLGR G +EDA + ++ +P+E
Sbjct: 500 GVLTACSHAGLLEEGRKVFESIK----DPAIDHYACMVDLLGRVGELEDAKRTMERMPME 555

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVR 383
           P A ++G+LL A RI+  VELG  AA  LF L+P + G +ILLSN+YA AG+W +  ++R
Sbjct: 556 PHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIR 615

Query: 384 ELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           E MK    KK  G SWV+   ++  F+V DR
Sbjct: 616 EAMKKGGVKKTTGWSWVEYGGKLHKFIVADR 646



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 97/511 (18%), Positives = 188/511 (36%), Gaps = 140/511 (27%)

Query: 8   PAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPA 67
           P     LF++    N+  + +M+  ++  +   K + +   M      P++     ++ +
Sbjct: 50  PHYTHLLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKS 109

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------- 117
              G     G   HA +++ G   D F+ NA+ DMYA+ G +  A+ VF+          
Sbjct: 110 AGNG-----GIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVA 164

Query: 118 ------------------------ISFRDEVSYNILIVGYSQTSD--------------- 138
                                   +  R+ +++  ++ GY++  D               
Sbjct: 165 DWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERS 224

Query: 139 ----------------CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
                             E L LF EM   G++ D  +++  ISAC++         +  
Sbjct: 225 VVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVR 284

Query: 183 VTIRKHLHTHLFVANSILDF--------------------------------YTRSGRID 210
              +K +  + FV  ++LD                                 YTR G +D
Sbjct: 285 TLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLD 344

Query: 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM-REDGVGYDPVSYIAILTAC 269
            A ++F+ +P ++  +WN++I GY   G+   AI LF+ M     +  D V+ +++++AC
Sbjct: 345 SARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISAC 404

Query: 270 SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP-------- 321
            H G +E G      +  + +K +   +  M+ +  R G MEDA ++ + +         
Sbjct: 405 GHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYN 464

Query: 322 --------------------------VEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
                                     +EPD   +  +L AC   G +E G    E    +
Sbjct: 465 TLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFES---I 521

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
           K     +Y  + ++    G+ ++A +  E M
Sbjct: 522 KDPAIDHYACMVDLLGRVGELEDAKRTMERM 552



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 45/84 (53%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++     +A  +F  +A +++VS+N +++ FA +   ++A+ L+  M      P+ VT
Sbjct: 438 MYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVT 497

Query: 61  LTNVLPACARGHFLRPGKEIHARI 84
              VL AC+    L  G+++   I
Sbjct: 498 FIGVLTACSHAGLLEEGRKVFESI 521


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 143/417 (34%), Positives = 237/417 (56%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    +E+  +   +  +++V+WNA++  +A++    KAL   + M +     N +T
Sbjct: 496 MYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYIT 555

Query: 61  LTNVLPACA-RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           + +VL AC   G  L  GK +HA I+  G   D  + N+L  MYAKCG L+ +Q++FN +
Sbjct: 556 VVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL 615

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ +++N ++   +      E L L S+MR  G+  D  SF   +SA A LA +++G+
Sbjct: 616 DNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQ 675

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++HG+ ++       F+ N+  D Y++ G I    K+      +   SWN LI   G  G
Sbjct: 676 QLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHG 735

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
             +     F  M E G+    V+++++LTACSHGGLV+KG  Y+D +  D  ++P   H 
Sbjct: 736 YFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHC 795

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C++DLLGR+G + +A   I  +P++P+  +W +LL +C+I+GN++ G  AAE+L  L+P
Sbjct: 796 ICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEP 855

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +    Y+L SNM+A  G+W++   VR+ M  +  KK   CSWV+ +D+V  F + DR
Sbjct: 856 EDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDR 912



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 186/375 (49%), Gaps = 13/375 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA + R  EA+ +F  +  K+++SWN+++A+F  +   L AL L+  M    +  N VT
Sbjct: 395 MYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVT 454

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV-FNIS 119
            T+ L AC    F   G+ +H  ++  GL ++  + NAL  MY K G ++ ++ V   + 
Sbjct: 455 FTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP 514

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC---ANLAAIKQ 176
            RD V++N LI GY++  D  ++L+ F  MR+ G+  + ++ +  +SAC    +L  +++
Sbjct: 515 RRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL--LER 572

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK +H   +     +   V NS++  Y + G +  +  +F+ L  ++  +WN ++     
Sbjct: 573 GKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAH 632

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G  +  + L   MR  GV  D  S+   L+A +   ++E+G++          +     
Sbjct: 633 HGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFI 692

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANI--WGALLGACRIYGNV-ELGAWAAEHLF 353
           +    D+  + G + + VK+   LP   + ++  W  L+ A   +G   E+ A   E L 
Sbjct: 693 FNAAADMYSKCGEIGEVVKM---LPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLE 749

Query: 354 M-LKPQHCGYYILLS 367
           M +KP H  +  LL+
Sbjct: 750 MGIKPGHVTFVSLLT 764



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 168/337 (49%), Gaps = 7/337 (2%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A+Y+F  ++E++ +SWN++ A +AQN    ++ ++   M   ++  NS T++ +L     
Sbjct: 304 ANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGH 363

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
               + G+ IH  +++ G +  + + N L  MYA  G    A  VF  +  +D +S+N L
Sbjct: 364 VDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSL 423

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           +  +       ++L L   M   G   + V+F  A++AC      ++G+ +HG+ +   L
Sbjct: 424 MASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGL 483

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             +  + N+++  Y + G +  + ++   +P +D  +WN LI GY    + D A+  F+ 
Sbjct: 484 FYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQT 543

Query: 250 MREDGVGYDPVSYIAILTAC-SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
           MR +GV  + ++ +++L+AC   G L+E+GK     + +   +  E     ++ +  + G
Sbjct: 544 MRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCG 603

Query: 309 LMEDAVKLIKNLPVEPDANI--WGALLGACRIYGNVE 343
            +  +  L   L    + NI  W A+L A   +G+ E
Sbjct: 604 DLSSSQDLFNGL---DNRNIITWNAMLAANAHHGHGE 637



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 159/341 (46%), Gaps = 36/341 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  R   A +LF  +  +N VSWN M++   +  L L+ ++  R+M      P+S  
Sbjct: 116 MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 175

Query: 61  LTNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           + +++ AC R G   R G ++H  + + GL  D++++ A+  +Y   G ++ ++ VF  +
Sbjct: 176 IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 235

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ VS+  L+VGYS   +  E + ++ +  L                         G+
Sbjct: 236 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESL-------------------------GR 270

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +I G  ++  L + L V NS++      G +D AN IFD +  +D+ SWN++   Y   G
Sbjct: 271 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 330

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
            ++ +  +F  MR     +D V+   + T  S  G V+  +K+   +    VK       
Sbjct: 331 HIEESFRIFSLMRR---FHDEVNSTTVSTLLSVLGHVDH-QKWGRGIHGLVVKMGFDSVV 386

Query: 299 CMVDLLGR----AGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           C+ + L R    AG   +A  + K +P + D   W +L+ +
Sbjct: 387 CVCNTLLRMYAGAGRSVEANLVFKQMPTK-DLISWNSLMAS 426



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 148/323 (45%), Gaps = 27/323 (8%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + ++N+VSW +++  ++      + + + ++  +                      
Sbjct: 231 VFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESL---------------------- 268

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
              G++I  ++++ GL   L + N+L  M    G ++ A  +F+ +S RD +S+N +   
Sbjct: 269 ---GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAA 325

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y+Q     ES  +FS MR    + +  +    +S   ++   K G+ IHG+ ++    + 
Sbjct: 326 YAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSV 385

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           + V N++L  Y  +GR   AN +F  +P KD  SWN+L+  +   G    A+ L  +M  
Sbjct: 386 VCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMIS 445

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
            G   + V++ + L AC      EKG+     +    +   ++    +V + G+ G M +
Sbjct: 446 SGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSE 505

Query: 313 AVKLIKNLPVEPDANIWGALLGA 335
           + +++  +P   D   W AL+G 
Sbjct: 506 SRRVLLQMP-RRDVVAWNALIGG 527



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 162/338 (47%), Gaps = 36/338 (10%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SFRDEVSYNILIVGYSQ 135
           G+ +HA  ++  +   +  TN L +MY K G +  A+++F+I   R+EVS+N ++ G  +
Sbjct: 91  GRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVR 150

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI-KQGKEIHGVTIRKHLHTHLF 194
                E +  F +M  LG+K         ++AC    ++ ++G ++HG   +  L + ++
Sbjct: 151 VGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 210

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           V+ +IL  Y   G +  + K+F+ +P ++  SW +L++GY   GE +  I+++   +++ 
Sbjct: 211 VSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIY---KDES 267

Query: 255 VGYDPVSYI-------------AILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACM 300
           +G   +  +             ++++     G V+     FD+M + D++    +  A  
Sbjct: 268 LGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAA-- 325

Query: 301 VDLLGRAGLMEDAVK---LIKNLPVEPDANIWGALLGACRIYGNVELGAWA-AEHLFMLK 356
                + G +E++ +   L++    E ++     LL    + G+V+   W    H  ++K
Sbjct: 326 ---YAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLS---VLGHVDHQKWGRGIHGLVVK 379

Query: 357 PQH----CGYYILLSNMYAEAGKWDEASKVRELMKSRE 390
                  C    LL  MYA AG+  EA+ V + M +++
Sbjct: 380 MGFDSVVCVCNTLL-RMYAGAGRSVEANLVFKQMPTKD 416


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 145/415 (34%), Positives = 242/415 (58%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      ++ +F ++  ++ +SW  ++A FAQ+    +AL+++ E+       +S+ 
Sbjct: 411 MYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMM 470

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + ++L  C     +   K++H   IR GL  DL L N L D+Y +CG  + + N+F  + 
Sbjct: 471 IGSILETCCGLKSISLLKQVHCYAIRNGL-LDLILENRLIDIYGECGEFDHSLNLFQRVE 529

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+  +I   +     + ++ LF+EM+   ++ D V+ +  + A A L+++ +GK+
Sbjct: 530 KKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQ 589

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  IR++      V +S++D Y+  G ++ A ++F+    KD   W  +I   GM G 
Sbjct: 590 VHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGH 649

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AI+LF+ M + G+  D VS++A+L ACSH  LVE+GK Y D M +   +KP + HYA
Sbjct: 650 GKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYA 709

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VD+LGR+G  E+A + IK +P++P + +W ALLGACR++ N  L   AA  L  L+P 
Sbjct: 710 CVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPD 769

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + G YIL+SN++AE GKW+ A + R  M  R  +KNP CSW++  + +  F   D
Sbjct: 770 NPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGD 824



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 173/343 (50%), Gaps = 14/343 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-N 57
           MYAK      A  +F  + +  +++ SWN++V+   QN   L+AL L R M     FP N
Sbjct: 208 MYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAG-FPMN 266

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF- 116
           S T   VL  CA    L  G+E+HA +++ G   ++   NAL  MYAK G ++ A  VF 
Sbjct: 267 SYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNI-QCNALLVMYAKYGRVDSALRVFG 325

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            I+ +D +S+N ++  Y Q S  +E++  F EM   G + D    +   SA  +L+ +  
Sbjct: 326 QIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNN 385

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+E H   I++ LHT L V N+++D Y + G I+ + K+F+ + ++D  SW T++  +  
Sbjct: 386 GREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQ 445

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
                 A+ +   ++++G+  D +   +IL  C   GL  K      ++   +++   + 
Sbjct: 446 SSRHSEALEMILELQKEGIMVDSMMIGSILETCC--GL--KSISLLKQVHCYAIRNGLLD 501

Query: 297 YAC---MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
                 ++D+ G  G  + ++ L + +  + D   W +++  C
Sbjct: 502 LILENRLIDIYGECGEFDHSLNLFQRVE-KKDIVSWTSMINCC 543



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 166/346 (47%), Gaps = 17/346 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL---VREMPIHNEFPN 57
           MY +  R  +A  LF+ +  + + SWNA+V  +  +    +A+++   +R        P+
Sbjct: 104 MYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPD 163

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF- 116
             TL +VL AC      R G E+H   ++ GL+    + NAL  MYAKCG L+ A  VF 
Sbjct: 164 GCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFE 223

Query: 117 --NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
                 RD  S+N ++ G  Q     E+L+LF  M+  G   +  + +  +  CA L  +
Sbjct: 224 WLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLL 283

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G+E+H   ++     ++   N++L  Y + GR+D A ++F  +  KD  SWN+++  Y
Sbjct: 284 SLGRELHAALLKCGSELNI-QCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCY 342

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP-- 292
                   AI+ F  M + G   D    +++ +A  H   +  G+    E  A ++K   
Sbjct: 343 VQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGR----EFHAYAIKQRL 398

Query: 293 -TEMHYA-CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
            T++     ++D+  + G +E + K+ +++ +  D   W  +L AC
Sbjct: 399 HTDLQVGNTLMDMYIKCGSIECSAKVFESMGIR-DHISWTTIL-AC 442



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 134/269 (49%), Gaps = 17/269 (6%)

Query: 77  GKEIHARIIRKG-LNFD--LFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           G+++HA  +  G LN D   FL   L  MY +CG ++ A+ +FN +  R   S+N L+  
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135

Query: 133 YSQTSDCSESLSLFSEMRLL---GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           Y  +    E++ ++  MR     G   D  +    + AC      + G E+HG+ ++  L
Sbjct: 136 YLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGL 195

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINLF 247
                VAN+++  Y + G +D A ++F+ L    +D ASWN+++ G    G    A+ LF
Sbjct: 196 DKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALF 255

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK-PTEMHYAC--MVDLL 304
             M+  G   +  + +A+L  C+  GL+  G+    E+ A  +K  +E++  C  ++ + 
Sbjct: 256 RGMQSAGFPMNSYTSVAVLQVCAELGLLSLGR----ELHAALLKCGSELNIQCNALLVMY 311

Query: 305 GRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            + G ++ A+++   +  E D   W ++L
Sbjct: 312 AKYGRVDSALRVFGQI-AEKDYISWNSML 339



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 4/147 (2%)

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
           F+A  ++  Y R GR+D A ++F+ +P +   SWN L+  Y   G    A+ ++ AMR  
Sbjct: 96  FLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRAS 155

Query: 254 ---GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
              G   D  +  ++L AC   G    G +         +  + +    ++ +  + GL+
Sbjct: 156 AAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLL 215

Query: 311 EDAVKLIKNLPVEP-DANIWGALLGAC 336
           + A+++ + L  +  D   W +++  C
Sbjct: 216 DSALRVFEWLQQDARDVASWNSVVSGC 242


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 135/417 (32%), Positives = 240/417 (57%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+   P  A+ +F  + +KN+++W+A++  FA +    +AL+  R M      PN VT
Sbjct: 155 MYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVT 214

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC--GCLNLAQNVFNI 118
             ++L        L     IH  I   GL+    ++NAL ++Y +C  G L++A+ +   
Sbjct: 215 FISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQE 274

Query: 119 SFRDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
               +++ +N+LI GY+      E+L  +  ++L  +  D V+F+  ++AC +  ++ +G
Sbjct: 275 MDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEG 334

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K IH   +   L + + V N++ + Y++ G ++ A +IFD +P++ + SWN ++  Y   
Sbjct: 335 KMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQH 394

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           GE +  + L   M ++GV  + ++++++L++CSH GL+ +G +YF  +  D  ++    H
Sbjct: 395 GESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEH 454

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y C+VDLLGRAG +++A K I  +P EP+   W +LLGACR++ +++ G  AA  L  L 
Sbjct: 455 YGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELD 514

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P +    ++LSN+Y+E G W  A+K+R  M SR  KK PG S +Q +++V +F V D
Sbjct: 515 PGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRD 571



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 164/345 (47%), Gaps = 4/345 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K     +A  +F  +  +++ +WN+M++ ++ +    +A  + + M    E  + VT 
Sbjct: 55  YTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTF 114

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
            ++L AC     L+ GK +   I       DLF+  AL  MYA+C     A  VF  +  
Sbjct: 115 LSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQ 174

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ ++++ +I  ++    C E+L  F  M+  G+  + V+F+  ++     + +++   I
Sbjct: 175 KNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRI 234

Query: 181 HGVTIRKHLHTHLFVANSILDFYTR--SGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           H +     L     ++N++++ Y R  +G +D+A  I   +  +   +WN LI GY + G
Sbjct: 235 HLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHG 294

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
               A+  ++ ++ + +  D V++I++L AC+    + +GK          +    +   
Sbjct: 295 RSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKN 354

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            + ++  + G ME+A ++  ++P+   A  W  +L A   +G  E
Sbjct: 355 ALTNMYSKCGSMENARRIFDSMPIRS-AVSWNGMLQAYAQHGESE 398



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 131/286 (45%), Gaps = 2/286 (0%)

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N +T  NVL +      LR GK IH+ +     + D+F+  AL + Y KCG L  A+ VF
Sbjct: 9   NVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVF 68

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           + +  R   ++N +I  YS +    E+  +F  M+  G + D V+F+  + AC N   ++
Sbjct: 69  DGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQ 128

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK +            LFV  +++  Y R    + A ++F  +  K+  +W+ +I  + 
Sbjct: 129 HGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFA 188

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G    A+  F  M+++G+  + V++I++L   +    +E+  +    +    +  T  
Sbjct: 189 DHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTT 248

Query: 296 HYACMVDLLGRAGLME-DAVKLIKNLPVEPDANIWGALLGACRIYG 340
               +V++ GR    E D  ++I     E     W  L+    ++G
Sbjct: 249 MSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHG 294



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 103/194 (53%), Gaps = 3/194 (1%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT-HLFVANSILDFYTRSG 207
           M L G+K +V++F+  +++  +  A+++GK IH   +R+  H+  +FV  ++++ YT+ G
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSC-VRESEHSLDVFVNTALVNTYTKCG 59

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
            +  A K+FD +P +   +WN++I  Y +      A  +F+ M+ +G   D V++++IL 
Sbjct: 60  SLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILD 119

Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           AC +   ++ GK   + +   S +        ++ +  R    E+A ++   +  + +  
Sbjct: 120 ACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMK-QKNLI 178

Query: 328 IWGALLGACRIYGN 341
            W A++ A   +G+
Sbjct: 179 TWSAIITAFADHGH 192


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 141/415 (33%), Positives = 234/415 (56%), Gaps = 2/415 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK     EA   F  ++ +++V WN MV+ +A N ++ KA  + + M +     ++ T 
Sbjct: 223 YAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTF 282

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T+++ +C        GK++H  IIR   + D+ + +AL DMY+K   +  A+  F+ +  
Sbjct: 283 TSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIV 342

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ VS+  +IVGY Q  D  E++ L  EM  +    D ++    +S+C NL+A  +  ++
Sbjct: 343 KNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQV 402

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   +       L +AN+++  Y++ G I  A + F  +   D  SW +L+  Y   G  
Sbjct: 403 HAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLS 462

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYAC 299
              + +FE M    V  D V+++ +L+AC+HGG V +G  YF+ M     + P   HY C
Sbjct: 463 KEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTC 522

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           ++DLLGRAG +++A+ L+ ++PVEP ++  GA LGAC+++ NV L  WA+E LF+++P  
Sbjct: 523 IIDLLGRAGFLDEAINLLTSMPVEPRSDTLGAFLGACKVHRNVGLARWASEKLFVMEPNE 582

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
              Y L+SNMYA  G W + ++VR+LM+ R   K PGCSW++   EV  FV  D+
Sbjct: 583 PANYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSWMEIAGEVHTFVSRDK 637



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 188/385 (48%), Gaps = 30/385 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL----VREMPIHNEFP 56
           +Y K     +   +F  +  KN+VSWN ++    +   +   ++L     R+M +    P
Sbjct: 117 VYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAP 176

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N +TL  +L A    + +   +++H  I++ G + + F+ +AL D YAK G ++ AQ+ F
Sbjct: 177 NCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAF 236

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           + +S RD V +N+++  Y+      ++  +F  MRL G+K D  +F   I++C  L +  
Sbjct: 237 DEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCG 296

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK++HG+ IR      + VA++++D Y+++  I+ A K FD + VK+  SW T+I+GYG
Sbjct: 297 LGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYG 356

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDE 284
             G+   A+ L + M       D ++  +IL++C            H  +VE G + F  
Sbjct: 357 QHGDGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLS 416

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344
           +              +V    + G +  A +   ++  EPD   W +L+GA   +G  + 
Sbjct: 417 IA-----------NALVSAYSKCGSIGSAFQSFSSV-AEPDIISWTSLMGAYAFHGLSKE 464

Query: 345 GAWAAEHLFM--LKPQHCGYYILLS 367
           G    E +    ++P    +  +LS
Sbjct: 465 GVEVFEKMLFSNVRPDKVAFLGVLS 489



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 125/274 (45%), Gaps = 42/274 (15%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K+    +A   F  +  KNIVSW  M+  + Q+    +A++L++EM     +P+ + 
Sbjct: 323 MYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELA 382

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA-QNVFNIS 119
           L ++L +C          ++HA ++  G    L + NAL   Y+KCG +  A Q+  +++
Sbjct: 383 LASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVA 442

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D +S+  L+  Y+      E + +F +M    ++ D V+F+G +SACA          
Sbjct: 443 EPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACA---------- 492

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            HG  + + LH                   +L   ++  +P  DS  +  +I   G  G 
Sbjct: 493 -HGGFVLEGLH-----------------YFNLMINVYQIMP--DSEHYTCIIDLLGRAGF 532

Query: 240 VDTAINLFEAM----REDGVGYDPVSYIAILTAC 269
           +D AINL  +M    R D +G       A L AC
Sbjct: 533 LDEAINLLTSMPVEPRSDTLG-------AFLGAC 559



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 128/268 (47%), Gaps = 7/268 (2%)

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           ++ L   A+  FL  GK++HA +I+ G    L L N +  +Y KC   N    +F+ +  
Sbjct: 77  SHALKISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPL 136

Query: 121 RDEVSYNILIVGYSQTSDCSESL-----SLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           ++ VS+N LI G  +  +C  +L       F +M L  M  + ++  G + A   L  + 
Sbjct: 137 KNVVSWNTLICGVVE-GNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVG 195

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
             +++H   ++    ++ FV ++++D Y + G +D A   FD +  +D   WN ++  Y 
Sbjct: 196 ICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYA 255

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
           + G    A  +F+ MR +GV  D  ++ +++ +C   G    GK+    +   S     +
Sbjct: 256 LNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVL 315

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVE 323
             + +VD+  +   +EDA K    + V+
Sbjct: 316 VASALVDMYSKNENIEDARKAFDGMIVK 343


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 150/450 (33%), Positives = 241/450 (53%), Gaps = 37/450 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A  +F ++  +++VSW ++ + + +     K + + REM      PN +T+
Sbjct: 209 YGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTV 268

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-- 119
           +++LPACA    L+ GKEIH   +R G+  +LF+ +AL  +YAKC  +  A+ VF++   
Sbjct: 269 SSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPH 328

Query: 120 -------------FR---------------------DEVSYNILIVGYSQTSDCSESLSL 145
                        F+                     DE ++N +I G  +     E++ +
Sbjct: 329 RDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEM 388

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           F +M+ +G K + ++    + AC+    ++ GKEIH    R      L    ++L  Y +
Sbjct: 389 FRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAK 448

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
            G ++L+  +FD +  KD  +WNT+I+   M G    A+ LF+ M    V  + V++  +
Sbjct: 449 CGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGV 508

Query: 266 LTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           L+ CSH  LVE+G + F+ M  D  V+P   HY+C+VD+  RAG + +A K I+ +P+EP
Sbjct: 509 LSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEP 568

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
            A+ WGALL ACR+Y NVEL   +A+ LF ++P + G Y+ L N+   A  W EAS+VR 
Sbjct: 569 TASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRI 628

Query: 385 LMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           LMK R   K PGCSW+Q  ++V  FVV D+
Sbjct: 629 LMKERGITKTPGCSWLQVGNKVHTFVVGDK 658



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 142/288 (49%), Gaps = 3/288 (1%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
            A  LF NI + +  + + +++    + L  +A+++   +      P+         ACA
Sbjct: 116 RARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACA 175

Query: 70  -RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
             G  LR  KE+H    R G+  D+F+ NAL   Y KC C+  A+ VF+ +  RD VS+ 
Sbjct: 176 VSGDALRV-KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWT 234

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            L   Y +     + + +F EM   G+K + ++    + ACA L  +K GKEIHG  +R 
Sbjct: 235 SLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRH 294

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            +  +LFV ++++  Y +   +  A  +FD +P +D  SWN ++  Y    E +   +LF
Sbjct: 295 GMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLF 354

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             M  DGV  D  ++ A++  C   G  E+  + F +MQ    KP E+
Sbjct: 355 LKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEI 402



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 148/293 (50%), Gaps = 48/293 (16%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNR-------LELK------------ 41
           +YAK     EA  +F  +  +++VSWN ++  + +N+       L LK            
Sbjct: 309 LYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEAT 368

Query: 42  ----------------ALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
                           A+++ R+M      PN +T++++LPAC+    LR GKEIH  + 
Sbjct: 369 WNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVF 428

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVGYSQTSDCSESLS 144
           R     DL  T AL  MYAKCG LNL++NVF++  R D V++N +I+  +   +  E+L 
Sbjct: 429 RHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALF 488

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL----HTHLFVANSIL 200
           LF +M L  ++ + V+F G +S C++   +++G +I     R HL      H    + ++
Sbjct: 489 LFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHY---SCVV 545

Query: 201 DFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGMLGEVD----TAINLFE 248
           D Y+R+GR++ A K    +P++ +AS W  L+    +   V+    +A  LFE
Sbjct: 546 DIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFE 598



 Score = 42.4 bits (98), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           G  + A ++FD +P  D  + +TLI      G  + AI ++ +++E G+  D   ++A  
Sbjct: 112 GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 171

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
            AC+  G   + K+  D+     V         ++   G+   +E A ++  +L V  D 
Sbjct: 172 KACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVR-DV 230

Query: 327 NIWGAL 332
             W +L
Sbjct: 231 VSWTSL 236


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 150/450 (33%), Positives = 241/450 (53%), Gaps = 37/450 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K      A  +F ++  +++VSW ++ + + +     K + + REM      PN +T+
Sbjct: 123 YGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTV 182

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-- 119
           +++LPACA    L+ GKEIH   +R G+  +LF+ +AL  +YAKC  +  A+ VF++   
Sbjct: 183 SSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPH 242

Query: 120 -------------FR---------------------DEVSYNILIVGYSQTSDCSESLSL 145
                        F+                     DE ++N +I G  +     E++ +
Sbjct: 243 RDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEM 302

Query: 146 FSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205
           F +M+ +G K + ++    + AC+    ++ GKEIH    R      L    ++L  Y +
Sbjct: 303 FRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAK 362

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
            G ++L+  +FD +  KD  +WNT+I+   M G    A+ LF+ M    V  + V++  +
Sbjct: 363 CGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGV 422

Query: 266 LTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324
           L+ CSH  LVE+G + F+ M  D  V+P   HY+C+VD+  RAG + +A K I+ +P+EP
Sbjct: 423 LSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEP 482

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
            A+ WGALL ACR+Y NVEL   +A+ LF ++P + G Y+ L N+   A  W EAS+VR 
Sbjct: 483 TASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRI 542

Query: 385 LMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           LMK R   K PGCSW+Q  ++V  FVV D+
Sbjct: 543 LMKERGITKTPGCSWLQVGNKVHTFVVGDK 572



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 142/288 (49%), Gaps = 3/288 (1%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
            A  LF NI + +  + + +++    + L  +A+++   +      P+         ACA
Sbjct: 30  RARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACA 89

Query: 70  -RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
             G  LR  KE+H    R G+  D+F+ NAL   Y KC C+  A+ VF+ +  RD VS+ 
Sbjct: 90  VSGDALRV-KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWT 148

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            L   Y +     + + +F EM   G+K + ++    + ACA L  +K GKEIHG  +R 
Sbjct: 149 SLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRH 208

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            +  +LFV ++++  Y +   +  A  +FD +P +D  SWN ++  Y    E +   +LF
Sbjct: 209 GMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLF 268

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             M  DGV  D  ++ A++  C   G  E+  + F +MQ    KP E+
Sbjct: 269 LKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEI 316



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 147/290 (50%), Gaps = 42/290 (14%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNR-------LELK------------ 41
           +YAK     EA  +F  +  +++VSWN ++  + +N+       L LK            
Sbjct: 223 LYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEAT 282

Query: 42  ----------------ALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
                           A+++ R+M      PN +T++++LPAC+    LR GKEIH  + 
Sbjct: 283 WNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVF 342

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVGYSQTSDCSESLS 144
           R     DL  T AL  MYAKCG LNL++NVF++  R D V++N +I+  +   +  E+L 
Sbjct: 343 RHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALF 402

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL-HTHLFVANSILDFY 203
           LF +M L  ++ + V+F G +S C++   +++G +I     R HL        + ++D Y
Sbjct: 403 LFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIY 462

Query: 204 TRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGMLGEVD----TAINLFE 248
           +R+GR++ A K    +P++ +AS W  L+    +   V+    +A  LFE
Sbjct: 463 SRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFE 512



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)

Query: 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           G  + A ++FD +P  D  + +TLI      G  + AI ++ +++E G+  D   ++A  
Sbjct: 26  GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 85

Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
            AC+  G   + K+  D+     V         ++   G+   +E A ++  +L V  D 
Sbjct: 86  KACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVR-DV 144

Query: 327 NIWGAL 332
             W +L
Sbjct: 145 VSWTSL 150


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 149/403 (36%), Positives = 229/403 (56%), Gaps = 11/403 (2%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + + N+  WN M+    +N    KA+ L  EM + +  PN  T   VL AC+    
Sbjct: 114 VFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGV 173

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGY 133
           +  G ++HA +++ GL  D  + ++   MYA  G L  A+ +      D+    +  V  
Sbjct: 174 VAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRIL-----DDKGGEVDAVCM 228

Query: 134 SQTSDC-SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
                C  E+L +F +M+   ++         +SACANL A+ QG+ IH    R  +   
Sbjct: 229 PDRKGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLD 288

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
             +  S++D Y + GRIDLA ++F+ +  K+ +SWN +I G  M G  + AI+LF  M  
Sbjct: 289 GVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM-- 346

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLME 311
             +  + ++++ +L AC+HGGLV+KG   F+ M+ +  V+P   HY C+VDLLGRAGL+ 
Sbjct: 347 -DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLT 405

Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371
           +A K++ ++P EP   +WGALLGACR +GNVELG    + L  L+PQ+ G Y LLSN+YA
Sbjct: 406 EAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYA 465

Query: 372 EAGKWDEASKVRELMKSREAKKNPGCSWVQT-RDEVQDFVVND 413
           +AG+W+E  +VR+LMK R  K  PG S +   R EV  F++ D
Sbjct: 466 KAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGD 508



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 4/118 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R   A  +F  ++ K + SWNAM+   A +     A+ L  +M I+   PN +T
Sbjct: 298 MYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIN---PNEIT 354

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
              VL ACA G  ++ G  I   + ++ G+   +     + D+  + G L  A+ V +
Sbjct: 355 FVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVS 412


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 141/419 (33%), Positives = 249/419 (59%), Gaps = 6/419 (1%)

Query: 1   MYAKSSRPA---EASYLFHNIAEKNIVSWNAMVANFAQNR-LELKALQLVREMPIHNEFP 56
           MYAK        +A  +F  +   N++SW A++  + Q+   + +A++L  EM      P
Sbjct: 189 MYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKP 248

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N  T ++VL ACA    +  G++++A +++  L     + N+L  MY++CG +  A+  F
Sbjct: 249 NHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAF 308

Query: 117 NISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           ++ F ++ VSYN ++  Y+++ +  E+  LF+E+   G   +  +F   +S  +++ AI 
Sbjct: 309 DVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIG 368

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           +G++IH   ++    ++L + N+++  Y+R G I+ A ++F+ +   +  SW ++I G+ 
Sbjct: 369 KGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFA 428

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
             G    A+  F  M E GV  + V+YIA+L+ACSH GL+ +G K+F  M+ +  + P  
Sbjct: 429 KHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRM 488

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYAC+VDLLGR+G +E+A++L+ ++P + DA +    LGACR++GN++LG  AAE +  
Sbjct: 489 EHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILE 548

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
             P     YILLSN++A AG+W+E +++R+ MK R   K  GCSW++  ++V  F V D
Sbjct: 549 QDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGD 607



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 176/341 (51%), Gaps = 11/341 (3%)

Query: 1   MYAKSSRPAEASY-LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           M+ K +   E++Y +F  + ++N+V+W  M+  F Q      A+ L  +M +    P+  
Sbjct: 87  MFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRF 146

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC---GCLNLAQNVF 116
           TL+ V+ ACA    L  G++ H  +++ GL+ D+ +  +L DMYAKC   G ++ A+ VF
Sbjct: 147 TLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVF 206

Query: 117 N-ISFRDEVSYNILIVGYSQTSDCS-ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           + +   + +S+  +I GY Q+  C  E++ LF EM    +K +  +F   + ACANL+ I
Sbjct: 207 DRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDI 266

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G++++ + ++  L +   V NS++  Y+R G ++ A K FD L  K+  S+NT++  Y
Sbjct: 267 WLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAY 326

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
                 + A  LF  +   G G +  ++ ++L+  S  G + KG++    +     K   
Sbjct: 327 AKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNL 386

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI--WGALL 333
                ++ +  R G +E A ++   +    D N+  W +++
Sbjct: 387 HICNALISMYSRCGNIEAAFQVFNEM---GDGNVISWTSMI 424



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 151/303 (49%), Gaps = 7/303 (2%)

Query: 20  EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79
           ++++VSW+A+++ +A N    +A+    +M     +PN    T V  AC+    +  GK 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 80  IHARIIRKG-LNFDLFLTNALTDMYAKC-GCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           I   +++ G    D+ +  AL DM+ K  G L  A  VF+ +  R+ V++ ++I  + Q 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               +++ LF +M L G   D  +  G +SACA +  +  G++ H + ++  L   + V 
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVG 183

Query: 197 NSILDFYTR---SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD-TAINLFEAMRE 252
            S++D Y +    G +D A K+FD +PV +  SW  +I GY   G  D  AI LF  M +
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
             V  +  ++ ++L AC++   +  G++ +  +    +         ++ +  R G ME+
Sbjct: 244 GQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMEN 303

Query: 313 AVK 315
           A K
Sbjct: 304 ARK 306


>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
          Length = 620

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 147/417 (35%), Positives = 244/417 (58%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           +Y+    P  A  +F+ I  +++VSWNAM+  + +  +  +  +++R+M       PN+V
Sbjct: 172 IYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAV 231

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL  VL AC     L  G+ +       G+  D  + +AL  MY KCG +  A+ VF+ I
Sbjct: 232 TLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSI 291

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D V++N +I GY+Q    +E++SLF  M+  G+  D ++  G +SAC+ + A++ G 
Sbjct: 292 IDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGS 351

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+ G    + L+ +++V  +++D Y + G +D A ++F  +  K+ ASWN LI G    G
Sbjct: 352 ELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNG 411

Query: 239 EVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           + D AI  FE MR EDG+  D +++I +L+AC H GLV+ GK++F+ + ++  + P   H
Sbjct: 412 QGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEH 471

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y+CMVDLL R+G +E+    I+ +P + DA + GALL ACR   NVE+G      +  L+
Sbjct: 472 YSCMVDLLARSGHLEEVWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLE 531

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P +   Y++ S +YA +G+ D+++K+R  M+ R   K PGCSWV+   +V +F   D
Sbjct: 532 PTNSWNYVVSSKIYASSGRLDDSAKMRGPMRERGVNKTPGCSWVEISGKVLEFYAGD 588



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 40/247 (16%)

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H +  +  L++H    +S++  Y+       A K+F+ +P +D  SWN ++  YG +G  
Sbjct: 151 HALLEKIDLNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMN 210

Query: 241 DTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDE------MQADSVKPT 293
                +   M +DG V  + V+   +L AC   G +  G ++ +E      M+ DS+  +
Sbjct: 211 GEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLG-RWVEEWSKSAGMETDSLVGS 269

Query: 294 E---MHYAC-----------------------MVDLLGRAGLMEDAVKLIKNLP---VEP 324
               M+  C                       M+    + G+  +A+ L  N+    V P
Sbjct: 270 ALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCP 329

Query: 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWDEASKV 382
           D      +L AC   G +ELG+   +     +  +   Y+   L +MYA+ G  D+A +V
Sbjct: 330 DKITLAGVLSACSAVGALELGS-ELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEV 388

Query: 383 RELMKSR 389
              M+ +
Sbjct: 389 FRKMRCK 395


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 151/446 (33%), Positives = 246/446 (55%), Gaps = 37/446 (8%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA   R   + ++F+   E N+ S++A++ +  Q+RL  +A     +M      PN+ T 
Sbjct: 89  YAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTF 148

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---- 117
           ++VL +C+    L  GK +H + I+ GL  DL++   L D+YA+ G +  A+ +F+    
Sbjct: 149 SSVLKSCS----LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPE 204

Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                       +  RD V +N++I GY+Q+   +ESL LF  M
Sbjct: 205 RSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRM 264

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
            +     + V+ +  +SAC  L A++ G+ IH     K +  ++ V  +++D Y++ G +
Sbjct: 265 LVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSL 324

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           + A  +FD +  KD  +WN++I+GY M G    A+ LFE M E G     +++I IL+AC
Sbjct: 325 EDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSAC 384

Query: 270 SHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
            HGGLVE+G+ +F  M+    ++P   HY CMV+LLGRAG +E+A  L+KN+ +  D  +
Sbjct: 385 GHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVL 444

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
           WG LLG CR++ N++LG   A+ L   K  + G Y+LLSNMYA  G W+  +K+R LMK 
Sbjct: 445 WGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKE 504

Query: 389 REAKKNPGCSWVQTRDEVQDFVVNDR 414
              +K  GCS ++  ++V +FV  +R
Sbjct: 505 HGIEKEHGCSSIEVDNKVHEFVAGER 530



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 137/294 (46%), Gaps = 37/294 (12%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEV-SYNILIVGYSQTS 137
           +IHA ++R+GL  +  L   L   YA  G L+ +  VFN      V S++ +I  + Q+ 
Sbjct: 65  QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSR 124

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197
               +   +S+M   G++ +  +F   + +C+    ++ GK +H   I+  L + L+V  
Sbjct: 125 LFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQAIKLGLGSDLYVRT 180

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV-- 255
            ++D Y R G +  A ++FD +P +   S  T++  Y  +GE+D A +LFE M+E  V  
Sbjct: 181 GLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVC 240

Query: 256 ------GY-----------------------DPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
                 GY                       + V+ +A+L+AC   G +E G+     ++
Sbjct: 241 WNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIE 300

Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
              ++        ++D+  + G +EDA +L+ +   + D   W +++    ++G
Sbjct: 301 NKGIQINVHVGTALIDMYSKCGSLEDA-RLVFDRIRDKDVVAWNSMIVGYAMHG 353



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K     +A  +F  I +K++V+WN+M+  +A +     ALQL  EM      P  +T
Sbjct: 317 MYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDIT 376

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR 86
              +L AC  G  +  G+    R++R
Sbjct: 377 FIGILSACGHGGLVEEGRSFF-RLMR 401


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 149/415 (35%), Positives = 241/415 (58%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      ++ +F  +  K+ VSW  ++A +AQ+    +A+   R         + + 
Sbjct: 409 MYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMM 468

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + ++L AC+    +   K++H+  IR GL  DL L N + D+Y +CG +  A N+F  + 
Sbjct: 469 MGSILEACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLD 527

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V++  ++  +++     E+++LF +M   G++ D V+ +G + A A L+++ +GKE
Sbjct: 528 KKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKE 587

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  IR        V +S++D Y+  G ++ A K+FD    KD   W  +I   GM G 
Sbjct: 588 IHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGH 647

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AI +F+ M E GV  D VS++A+L ACSH  LV++GK Y D M +   ++P + HYA
Sbjct: 648 GKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYA 707

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGR+G  E+A K IK++P+EP + +W ALLGACRI+ N EL   A + L  L+P 
Sbjct: 708 CVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPD 767

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + G Y+L+SN++AE GKW+   ++R  M  +  +K+P CSW++  + V  F   D
Sbjct: 768 NPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARD 822



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 117/430 (27%), Positives = 197/430 (45%), Gaps = 45/430 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAE-KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MYAK      A  +F  + + +++ SWN+ ++   QN + L+AL L R M       NS 
Sbjct: 207 MYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSY 266

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   VL  CA    L  G+E+HA +++ G  F++   NAL  MYA+CG ++ A  VF  I
Sbjct: 267 TTVGVLQVCAELAQLNHGRELHAALLKCGTEFNI-QCNALLVMYARCGWVDSALRVFREI 325

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D +S+N ++  Y Q    +E++  F EM   G   D    +  +SA  +L  +  G+
Sbjct: 326 GDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGR 385

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+H   +++ L + L +AN+++D Y +   ++ + ++FD + +KD  SW T+I  Y    
Sbjct: 386 EVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSS 445

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQA 287
               AI  F   +++G+  DP+   +IL ACS           H   +  G    D +  
Sbjct: 446 RYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNG--LLDLILK 503

Query: 288 DSV---------------------KPTEMHYACMVDLLGRAGLMEDAVKLIK---NLPVE 323
           + +                     K   + +  MV+     GL+ +AV L     N  ++
Sbjct: 504 NRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQ 563

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQHCGYYILLSNMYAEAGKWDEAS 380
           PD+     +LGA  I G   L      H F+++   P        L +MY+  G  + A 
Sbjct: 564 PDSVALVGILGA--IAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYAL 621

Query: 381 KVRELMKSRE 390
           KV +  K ++
Sbjct: 622 KVFDEAKCKD 631



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 144/297 (48%), Gaps = 11/297 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM----PIHNEFP 56
           MY K  R  +A  LF  +  + + SWNA++     +    +A+ + R M    P+    P
Sbjct: 102 MYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAP 161

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           +  TL +VL AC      R G E+H   ++ GL+    + NAL  MYAKCG L+ A  VF
Sbjct: 162 DGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVF 221

Query: 117 NI--SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
                 RD  S+N  I G  Q     E+L LF  M+  G   +  + +G +  CA LA +
Sbjct: 222 EWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQL 281

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             G+E+H   ++     ++   N++L  Y R G +D A ++F  +  KD  SWN+++  Y
Sbjct: 282 NHGRELHAALLKCGTEFNI-QCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCY 340

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
                   AI+ F  M ++G   D    +++L+A  H G +  G+    E+ A +VK
Sbjct: 341 VQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGR----EVHAYAVK 393



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 128/269 (47%), Gaps = 17/269 (6%)

Query: 77  GKEIHARIIRKGLNFD---LFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           G+++HA  +  G   D    FL   L  MY KCG L  A  +F+ +  R   S+N LI  
Sbjct: 74  GRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGA 133

Query: 133 YSQTSDCSESLSLFSEMR----LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
              +    E++ ++  MR    + G   D  +    + AC      + G E+HG+ ++  
Sbjct: 134 CLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSG 193

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCL-PVKDSASWNTLILGYGMLGEVDTAINLF 247
           L     VAN+++  Y + G +D A ++F+ +   +D ASWN+ I G    G    A++LF
Sbjct: 194 LDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLF 253

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK-PTEMHYAC--MVDLL 304
             M+ DG   +  + + +L  C+    +  G+    E+ A  +K  TE +  C  ++ + 
Sbjct: 254 RRMQSDGFSMNSYTTVGVLQVCAELAQLNHGR----ELHAALLKCGTEFNIQCNALLVMY 309

Query: 305 GRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            R G ++ A+++ + +  + D   W ++L
Sbjct: 310 ARCGWVDSALRVFREIG-DKDYISWNSML 337



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 7/171 (4%)

Query: 173 AIKQGKEIHGVTIRKHL---HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
           A+ +G+++H   +           F+A  +L  Y + GR+  A+++FD +P +   SWN 
Sbjct: 70  AVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNA 129

Query: 230 LILGYGMLGEVDTAINLFEAMRED----GVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
           LI      G    A+ ++ AMR      G   D  +  ++L AC   G    G +     
Sbjct: 130 LIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLA 189

Query: 286 QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
               +  + +    +V +  + GL++ A+++ + +    D   W + +  C
Sbjct: 190 VKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGC 240


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 143/417 (34%), Positives = 237/417 (56%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    +E+  +   +  +++V+WNA++  +A++    KAL   + M +     N +T
Sbjct: 406 MYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYIT 465

Query: 61  LTNVLPACA-RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           + +VL AC   G  L  GK +HA I+  G   D  + N+L  MYAKCG L+ +Q++FN +
Sbjct: 466 VVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL 525

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ +++N ++   +      E L L S+MR  G+  D  SF   +SA A LA +++G+
Sbjct: 526 DNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQ 585

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++HG+ ++       F+ N+  D Y++ G I    K+      +   SWN LI   G  G
Sbjct: 586 QLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHG 645

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
             +     F  M E G+    V+++++LTACSHGGLV+KG  Y+D +  D  ++P   H 
Sbjct: 646 YFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHC 705

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C++DLLGR+G + +A   I  +P++P+  +W +LL +C+I+GN++ G  AAE+L  L+P
Sbjct: 706 ICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEP 765

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +    Y+L SNM+A  G+W++   VR+ M  +  KK   CSWV+ +D+V  F + DR
Sbjct: 766 EDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDR 822



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 186/375 (49%), Gaps = 13/375 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA + R  EA+ +F  +  K+++SWN+++A+F  +   L AL L+  M    +  N VT
Sbjct: 305 MYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVT 364

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV-FNIS 119
            T+ L AC    F   G+ +H  ++  GL ++  + NAL  MY K G ++ ++ V   + 
Sbjct: 365 FTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP 424

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC---ANLAAIKQ 176
            RD V++N LI GY++  D  ++L+ F  MR+ G+  + ++ +  +SAC    +L  +++
Sbjct: 425 RRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL--LER 482

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK +H   +     +   V NS++  Y + G +  +  +F+ L  ++  +WN ++     
Sbjct: 483 GKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAH 542

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G  +  + L   MR  GV  D  S+   L+A +   ++E+G++          +     
Sbjct: 543 HGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFI 602

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANI--WGALLGACRIYGNV-ELGAWAAEHLF 353
           +    D+  + G + + VK+   LP   + ++  W  L+ A   +G   E+ A   E L 
Sbjct: 603 FNAAADMYSKCGEIGEVVKM---LPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLE 659

Query: 354 M-LKPQHCGYYILLS 367
           M +KP H  +  LL+
Sbjct: 660 MGIKPGHVTFVSLLT 674



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 168/341 (49%), Gaps = 11/341 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  R   A +LF  +  +N VSWN M++   +  L L+ ++  R+M      P+S  
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 61  LTNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           + +++ AC R G   R G ++H  + + GL  D++++ A+  +Y   G ++ ++ VF  +
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ VS+  L+VGYS   +  E + ++  MR  G+  +  S    IS+C  L     G+
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +I G  ++  L + L V NS++      G +D AN IFD +  +D+ SWN++   Y   G
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
            ++ +  +F  MR     +D V+   + T  S  G V+  +K+   +    VK       
Sbjct: 241 HIEESFRIFSLMRR---FHDEVNSTTVSTLLSVLGHVDH-QKWGRGIHGLVVKMGFDSVV 296

Query: 299 CMVDLLGR----AGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           C+ + L R    AG   +A  + K +P + D   W +L+ +
Sbjct: 297 CVCNTLLRMYAGAGRSVEANLVFKQMPTK-DLISWNSLMAS 336



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 168/337 (49%), Gaps = 7/337 (2%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A+Y+F  ++E++ +SWN++ A +AQN    ++ ++   M   ++  NS T++ +L     
Sbjct: 214 ANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGH 273

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
               + G+ IH  +++ G +  + + N L  MYA  G    A  VF  +  +D +S+N L
Sbjct: 274 VDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSL 333

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           +  +       ++L L   M   G   + V+F  A++AC      ++G+ +HG+ +   L
Sbjct: 334 MASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGL 393

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             +  + N+++  Y + G +  + ++   +P +D  +WN LI GY    + D A+  F+ 
Sbjct: 394 FYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQT 453

Query: 250 MREDGVGYDPVSYIAILTAC-SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
           MR +GV  + ++ +++L+AC   G L+E+GK     + +   +  E     ++ +  + G
Sbjct: 454 MRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCG 513

Query: 309 LMEDAVKLIKNLPVEPDANI--WGALLGACRIYGNVE 343
            +  +  L   L    + NI  W A+L A   +G+ E
Sbjct: 514 DLSSSQDLFNGL---DNRNIITWNAMLAANAHHGHGE 547



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 155/323 (47%), Gaps = 2/323 (0%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           +F  + ++N+VSW +++  ++      + + + + M       N  +++ V+ +C     
Sbjct: 116 VFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKD 175

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
              G++I  ++++ GL   L + N+L  M    G ++ A  +F+ +S RD +S+N +   
Sbjct: 176 ESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAA 235

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y+Q     ES  +FS MR    + +  +    +S   ++   K G+ IHG+ ++    + 
Sbjct: 236 YAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSV 295

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           + V N++L  Y  +GR   AN +F  +P KD  SWN+L+  +   G    A+ L  +M  
Sbjct: 296 VCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMIS 355

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
            G   + V++ + L AC      EKG+     +    +   ++    +V + G+ G M +
Sbjct: 356 SGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSE 415

Query: 313 AVKLIKNLPVEPDANIWGALLGA 335
           + +++  +P   D   W AL+G 
Sbjct: 416 SRRVLLQMP-RRDVVAWNALIGG 437



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 128/247 (51%), Gaps = 9/247 (3%)

Query: 102 MYAKCGCLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS 160
           MY K G +  A+++F+I   R+EVS+N ++ G  +     E +  F +M  LG+K     
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 161 FMGAISACANLAAI-KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
               ++AC    ++ ++G ++HG   +  L + ++V+ +IL  Y   G +  + K+F+ +
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK-- 277
           P ++  SW +L++GY   GE +  I++++ MR +GVG +  S   ++++C   GL++   
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSC---GLLKDES 177

Query: 278 -GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
            G++   ++    ++        ++ +LG  G ++ A  +   +  E D   W ++  A 
Sbjct: 178 LGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMS-ERDTISWNSIAAAY 236

Query: 337 RIYGNVE 343
              G++E
Sbjct: 237 AQNGHIE 243


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 149/416 (35%), Positives = 229/416 (55%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +     + F  +   ++VSW  +V  + Q   E   LQ  + M   N  PN  T
Sbjct: 261 MYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYT 320

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            + V+  CA    L+ G+++HA ++  G    L + N++  +Y+KCG L     VF ++ 
Sbjct: 321 FSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMK 380

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           FRD ++++ +I  YSQ     E+    S MR  G K +  +    +S C ++A ++QGK+
Sbjct: 381 FRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQ 440

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +   L     V ++++  Y + G I  A+KIF      D  SW  +I GY   G 
Sbjct: 441 LHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGH 500

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AI LFE +++ G+  D V++I +LTACSH G+V+ G  YF+ M  D  + P++ HY 
Sbjct: 501 SQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYG 560

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLL RAG + DA  LI+++P++ D  +W  LL ACRI+G+V+ G  AA  +  L P 
Sbjct: 561 CMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPN 620

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G +I L+N++A  GKW EA+ +R LMKS+   K PG S V+ +D V  FV  DR
Sbjct: 621 CAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVFAFVSGDR 676



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 157/344 (45%), Gaps = 2/344 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      +  +F  +  +N V+W A++    +       L     M       +S  
Sbjct: 160 MYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYA 219

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
               L A A    L  G+ IH + ++KG + + F+ N+LT MY KCG L+   + F  + 
Sbjct: 220 YAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMR 279

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VS+  ++  Y Q       L  F  MR   +  +  +F   IS CAN A +K G++
Sbjct: 280 TLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQ 339

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +       L VANSI+  Y++ G +   +K+F  +  +D  +W+T+I  Y  +G 
Sbjct: 340 LHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGY 399

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A      MR +G   +  +  ++L+ C    ++E+GK+    + +  ++ T M  + 
Sbjct: 400 GEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSA 459

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           ++ +  + G + +A K+  +   + D   W A++     +G+ +
Sbjct: 460 LIIMYAKCGSIAEASKIFMD-SWKDDIISWTAMISGYAEHGHSQ 502



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 167/357 (46%), Gaps = 6/357 (1%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVTLT 62
           K++   +A  LF  + +++ VSW  +++ +  +    +AL+L  +M + +E   +   L+
Sbjct: 61  KTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLS 120

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
             L  C  G     G  +H   ++ GL   +F+ +AL DMY K G +  +  VF+ +  R
Sbjct: 121 LGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTR 180

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + V++  +I G  +       L+ FS M    +++D  ++  A+ A A+  A+  G+ IH
Sbjct: 181 NAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIH 240

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
             T++K    + FVANS+   Y + G++D     F  +   D  SW T++  Y  +G+ D
Sbjct: 241 TQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKED 300

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
             +  F+ MR   V  +  ++ A+++ C++   ++ G++    +              ++
Sbjct: 301 CGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIM 360

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            L  + G +    K+  ++    D   W  ++ A   Y  V  G  A E+L  ++ +
Sbjct: 361 TLYSKCGELASVSKVFCSMKFR-DIITWSTIIAA---YSQVGYGEEAFEYLSRMRSE 413



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 10/155 (6%)

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR-EDG 254
           AN+ L    ++  +  A  +FD LP +D  SW  +I GY    +   A+ LF  MR +  
Sbjct: 52  ANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSE 111

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY----ACMVDLLGRAGLM 310
           +  DP      L  C  G        Y   +   SVK   ++     + ++D+  + G +
Sbjct: 112 LRIDPFLLSLGLKTCGLG----LNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEI 167

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
             + K+   +P   +A  W A++      G  E G
Sbjct: 168 GRSCKVFDEMPTR-NAVTWTAVITGLVRAGYSEAG 201


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 140/417 (33%), Positives = 244/417 (58%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++      A  +F  I+EK++VSWN+M++ +++      A+ L  EM      P+ +T
Sbjct: 170 MYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMT 229

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L ++L AC     L  G  I   ++   ++ + F+ +AL  MY KCG L+ A+ VF+ + 
Sbjct: 230 LVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMV 289

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V++N +I GY+Q     E++ LFS MR  G+  D ++ +G +SACA++ A+  GK 
Sbjct: 290 KKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKW 349

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +      + L   ++V+ +++D Y + G +D A ++F+ +P K+  SWN +I      G 
Sbjct: 350 LDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGR 409

Query: 240 VDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
              +++LF+ M ++G    P  +S+I +L+AC H GLV++G++ FD M +   + P   H
Sbjct: 410 PQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEH 469

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           ++CMVDLL RAG + +A   I+ +P +PD  + GALLGAC+   NV++       L  ++
Sbjct: 470 HSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSERVMHMLLEME 529

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P + G YI+ S ++A   +WD+++++R LM+ R   K PGCSW++  ++V +F   D
Sbjct: 530 PLNSGNYIISSKIFANMKRWDDSARMRVLMRQRGVTKTPGCSWIEIENQVHEFHAGD 586



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 199/385 (51%), Gaps = 10/385 (2%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELK-ALQLVREMPIHNEFPNSVTLTNVLPACA 69
           AS LF  I   N  ++N M+        +    ++   +M      PN+ T   V  ACA
Sbjct: 78  ASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACA 137

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
               L  G+  H+ +++ GL  D  + ++L  MY++CG L  A+ VF+ IS +D VS+N 
Sbjct: 138 NLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNS 197

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +I GYS+     +++ LF EMR  G + D ++ +  + AC +L  +  G  I G  +   
Sbjct: 198 MISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENE 257

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           +  + FV ++++  Y + G +  A ++FD +  KD  +WN +I GY   G  D AI LF 
Sbjct: 258 MDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFS 317

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-CMVDLLGRA 307
            MRE GV  D ++ + +L+AC+  G ++ G K+ D   ++     +++ +  ++D+  + 
Sbjct: 318 GMRESGVNPDKITLVGVLSACASIGALDFG-KWLDTYASERGLQNDIYVSTALIDMYAKC 376

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYG----NVELGAWAAEHLFMLKPQHCGYY 363
           G ++DA+++ +++P + + + W A++ A   +G    ++ L    ++    ++P    + 
Sbjct: 377 GSLDDALRVFEDMPQKNEVS-WNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFI 435

Query: 364 ILLSNMYAEAGKWDEASKVRELMKS 388
            +LS     AG  DE  ++ +LM S
Sbjct: 436 GVLSAC-VHAGLVDEGRQLFDLMSS 459


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 143/416 (34%), Positives = 242/416 (58%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K      A  LF  I + ++VS+NAM++ +  N     +++L +E+ +  E  NS +
Sbjct: 251 LYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSS 310

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           +  ++P       L   + IH    + G+  +  ++ ALT +Y++   +  A+ +F+ S 
Sbjct: 311 IVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESS 370

Query: 121 RDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
              + S+N +I GY+Q     +++SLF EM+   ++ + V+    +SACA L A+  GK 
Sbjct: 371 EKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKW 430

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H +  R+   +++FV+ +++D Y + G I  A ++F  +P K++ +WN +I GYG+ G 
Sbjct: 431 VHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGY 490

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+NLF  M    V    V+++++L ACSH GLV +G + F  M  D   +P   HYA
Sbjct: 491 GHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYA 550

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAG ++ A+  I+ +PVEP   +WGALLGAC I+ +  L   A++ LF L PQ
Sbjct: 551 CMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQ 610

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + GYY+LLSN+Y+    + EA+ VR ++K R+  K PGC+ ++  + +  F   D+
Sbjct: 611 NVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQ 666



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 168/340 (49%), Gaps = 2/340 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K SR A A  +F  + E++ V WN MV+   +N    +A+ +  +M       +S T+
Sbjct: 151 YFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTV 210

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
             VLP  A    L  G  I    ++ G +   ++   L  +Y+KCG +  A+ +F  I  
Sbjct: 211 AAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQ 270

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
            D VSYN +I GY+  ++   S+ LF E+ + G K +  S +G I        +   + I
Sbjct: 271 PDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCI 330

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG   +  + ++  V+ ++   Y+R   I+ A  +FD    K  ASWN +I GY   G  
Sbjct: 331 HGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLT 390

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           + AI+LF+ M++  V  +PV+  +IL+AC+  G +  GK   D +  +S +        +
Sbjct: 391 EKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTAL 450

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           +D+  + G + +A +L   +P E +A  W A++    ++G
Sbjct: 451 IDMYAKCGSITEAQRLFSMMP-EKNAVTWNAMISGYGLHG 489



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 176/426 (41%), Gaps = 54/426 (12%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPAC 68
           +AS LF  I   ++  +N ++  F+ N     A+ L   +       P++ T   V+   
Sbjct: 60  QASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGA 119

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
           +    L  G  +HA  I  G   DLF+ +A+   Y K   +  A+ VF+ +  RD V +N
Sbjct: 120 SS---LGLGLLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWN 176

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            ++ G  + S   E++ +F +M   G+  D  +    +   A L  +  G  I  + ++ 
Sbjct: 177 TMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKV 236

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
             H+H +V   +   Y++ G I+ A  +F  +   D  S+N +I GY    E ++++ LF
Sbjct: 237 GFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLF 296

Query: 248 EAMREDGVGYDPVSYIAI-----------LTACSHG------------------------ 272
           + +   G   +  S + +           LT C HG                        
Sbjct: 297 KELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRL 356

Query: 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIW 329
             +E  +  FDE    S+      +  M+    + GL E A+ L + +    V P+    
Sbjct: 357 NEIESARLLFDESSEKSLAS----WNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTV 412

Query: 330 GALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS----NMYAEAGKWDEASKVREL 385
            ++L AC   G + LG W  +   ++  +     I +S    +MYA+ G   EA ++  +
Sbjct: 413 TSILSACAQLGALSLGKWVHD---LINRESFESNIFVSTALIDMYAKCGSITEAQRLFSM 469

Query: 386 MKSREA 391
           M  + A
Sbjct: 470 MPEKNA 475



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 5/190 (2%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
           + HA+II  GL+ DL     LT   +    ++ A  +F+ I   D   YN+LI  +S  +
Sbjct: 28  QTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNN 87

Query: 138 DCSESLSLFSEMR-LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
             S ++SL++ +R    ++ D  ++   IS  ++L            +I     + LFV 
Sbjct: 88  SPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHA---HSIVAGFGSDLFVG 144

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           ++I+  Y +  R+  A K+FD +  +D+  WNT++ G       D AI +F  M + G+G
Sbjct: 145 SAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIG 204

Query: 257 YDPVSYIAIL 266
           +D  +  A+L
Sbjct: 205 FDSTTVAAVL 214


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 154/447 (34%), Positives = 249/447 (55%), Gaps = 34/447 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK     EA  +F ++ ++N VSW  ++  F Q     ++L+L  +M       +   
Sbjct: 338 LYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFA 397

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  ++  C+    +   +++H+  ++ G    + ++N+L  MYAKCG L  A+++F+ + 
Sbjct: 398 LATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSME 457

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMR---------LLG--MKH------------ 156
            RD VS+  ++  YSQ  +  ++   F  M          +LG  ++H            
Sbjct: 458 ERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSA 517

Query: 157 ---------DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
                    D V+++     CA++ A K G +I G T++  L     V N+++  Y++ G
Sbjct: 518 MLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCG 577

Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
           RI  A KIFD L  KD  SWN +I GY   G    AI +F+ M + G   D +SY+A+L+
Sbjct: 578 RISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLS 637

Query: 268 ACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326
           +CSH GLV++GK YFD ++ D +V P   H++CMVDLL RAG + +A  LI  +P++P A
Sbjct: 638 SCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTA 697

Query: 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
            +WGALL AC+ +GN EL   AA+HLF L     G Y+LL+ +YA+AGK  ++++VR+LM
Sbjct: 698 EVWGALLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLM 757

Query: 387 KSREAKKNPGCSWVQTRDEVQDFVVND 413
           + +  KKNPG SW++ +++V  F   D
Sbjct: 758 RDKGIKKNPGYSWMEVKNKVHVFKAED 784



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 151/285 (52%), Gaps = 5/285 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAKS     A  LF ++ E+++VSWN MV+  +Q+    +AL +  +M       +S T 
Sbjct: 238 YAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTY 297

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
           T+ L ACA+   L  GK++HA++IR     D ++ +A+ ++YAKCGC   A+ VF ++  
Sbjct: 298 TSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRD 357

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+ +LI G+ Q    SESL LF++MR   M  D  +    IS C+N   +   +++
Sbjct: 358 RNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQL 417

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H ++++      + ++NS++  Y + G +  A  IF  +  +D  SW  ++  Y  +G +
Sbjct: 418 HSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNI 477

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
             A   F+ M    V    +++ A+L A    G  E G K +  M
Sbjct: 478 GKAREFFDGMSTRNV----ITWNAMLGAYIQHGAEEDGLKMYSAM 518



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 139/303 (45%), Gaps = 33/303 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQ-LVREMPIHNEFPNSVT 60
           YAK    ++A  LF  +  +++ SWN +++ + Q+   L A++  V      +  PN+ T
Sbjct: 105 YAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFT 164

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
               + +C    +     ++   + + G   D  +   + DM+ +CG ++ A   F+   
Sbjct: 165 FGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIE 224

Query: 118 -----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
                                        +  RD VS+N+++   SQ+    E+LS+  +
Sbjct: 225 RPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVD 284

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M   G++ D  ++  +++ACA L+++  GK++H   IR       +VA+++++ Y + G 
Sbjct: 285 MHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGC 344

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
              A ++F  L  +++ SW  LI G+   G    ++ LF  MR + +  D  +   I++ 
Sbjct: 345 FKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISG 404

Query: 269 CSH 271
           CS+
Sbjct: 405 CSN 407



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 137/349 (39%), Gaps = 74/349 (21%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF--NI 118
           L + L +C     L   + +H R++  GL   +FL N L   Y  CG L  A+ +   +I
Sbjct: 31  LADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDI 90

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEM-------------------RLLGMKHDVV 159
           +  + +++NI++ GY++    S++  LF  M                   R L      V
Sbjct: 91  TEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFV 150

Query: 160 S-------------FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206
           S             F  A+ +C  L   +   ++ G+  +        VA  I+D + R 
Sbjct: 151 SMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRC 210

Query: 207 GRIDLANK-------------------------------IFDCLPVKDSASWNTLILGYG 235
           G +D A+K                               +F+ +P +D  SWN ++    
Sbjct: 211 GAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALS 270

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK--PT 293
             G    A+++   M   GV  D  +Y + LTAC+    +  GK    ++ A  ++  P 
Sbjct: 271 QSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGK----QLHAQVIRSLPC 326

Query: 294 EMHY--ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
              Y  + MV+L  + G  ++A ++  +L  + +   W  L+G    YG
Sbjct: 327 IDPYVASAMVELYAKCGCFKEARRVFSSLR-DRNTVSWTVLIGGFLQYG 374


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 155/417 (37%), Positives = 238/417 (57%), Gaps = 16/417 (3%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+     EA  LF     +++ +W A+V+ +AQN +  +A ++   MP  N    +V+ 
Sbjct: 109 YARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERN----AVSW 164

Query: 62  TNVLPACARGHFLRPGKEIHARI-IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             ++ A  +   +   KE+   +  R   +++  LT      YA+ G L  A+ VF+ + 
Sbjct: 165 NAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTG-----YAQAGMLEEAKAVFDTMP 219

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+  ++  YSQ     E+L LF EM   G   +  +F   +S CA++AA++ G +
Sbjct: 220 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 279

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  IR       FV N++L  Y + G ++ A   F+ +  +D  SWNT+I GY   G 
Sbjct: 280 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGF 339

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD---SVKPTEMH 296
              A+ +F+ MR      D ++ + +L ACSH GLVEKG  YF  M  D   + KP   H
Sbjct: 340 GKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPE--H 397

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y CM+DLLGRAG + +A  L+K++P EPD+ +WGALLGA RI+ N ELG  AAE +F L+
Sbjct: 398 YTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELE 457

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P++ G Y+LLSN+YA +GKW +A K+R +M+ R  KK PG SW++ +++V  F   D
Sbjct: 458 PENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGD 514



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 136/308 (44%), Gaps = 54/308 (17%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQN-RLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           A + F    EK+ VSWN M+A + +N R+E                             A
Sbjct: 25  ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEE----------------------------A 56

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
           RG F                 +D+   NAL   Y + G ++ A+ +F+ +  RD VS+NI
Sbjct: 57  RGLF------------NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNI 104

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           ++ GY++  D  E+  LF    +     DV ++   +S  A    +++ + +      ++
Sbjct: 105 MVSGYARRGDMVEARRLFDAAPV----RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERN 160

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
             +     N+++  Y +   +D A ++F+ +P ++ ASWNT++ GY   G ++ A  +F+
Sbjct: 161 AVSW----NAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 216

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308
            M +     D VS+ A+L A S GG  E+  + F EM           +AC++       
Sbjct: 217 TMPQK----DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 272

Query: 309 LMEDAVKL 316
            +E  ++L
Sbjct: 273 ALECGMQL 280



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 108/242 (44%), Gaps = 40/242 (16%)

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD V+YN++I  ++     S +   F     L  + D VS+ G ++A      +++ + +
Sbjct: 4   RDSVTYNVMISSHANHGLVSLARHYFD----LAPEKDAVSWNGMLAAYVRNGRVEEARGL 59

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
                       +   N+++  Y + G++  A ++FD +P +D  SWN ++ GY   G++
Sbjct: 60  ----FNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDM 115

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEM---- 295
             A  LF+A        D  ++ A+++  +  G++E+ ++ FD M + ++V    M    
Sbjct: 116 VEARRLFDA----APVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAY 171

Query: 296 ----------------------HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                                  +  M+    +AG++E+A  +   +P + DA  W A+L
Sbjct: 172 IQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAAML 230

Query: 334 GA 335
            A
Sbjct: 231 AA 232



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A   F  + E+++VSWN M+A +A++    +AL++   M   +  P+ +T
Sbjct: 302 MYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDIT 361

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF 91
           L  VL AC+           H+ ++ KG+++
Sbjct: 362 LVGVLAACS-----------HSGLVEKGISY 381



 Score = 38.9 bits (89), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 16/175 (9%)

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +PV+DS ++N +I  +   G V  A + F+   E     D VS+  +L A    G VE+ 
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEK----DAVSWNGMLAAYVRNGRVEEA 56

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL-GACR 337
           +  F+      V    + +  ++    + G M +A +L   +P   D   W  ++ G  R
Sbjct: 57  RGLFNSRTEWDV----ISWNALMSGYVQWGKMSEARELFDRMPGR-DVVSWNIMVSGYAR 111

Query: 338 IYGNVELGAWAAEHLFMLKP-QHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
               VE     A  LF   P +    +  + + YA+ G  +EA +V + M  R A
Sbjct: 112 RGDMVE-----ARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNA 161


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 149/416 (35%), Positives = 229/416 (55%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +     + F  +   ++VSW  +V  + Q   E   LQ  + M   N  PN  T
Sbjct: 261 MYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYT 320

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            + V+  CA    L+ G+++HA ++  G    L + N++  +Y+KCG L     VF ++ 
Sbjct: 321 FSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMK 380

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           FRD ++++ +I  YSQ     E+    S MR  G K +  +    +S C ++A ++QGK+
Sbjct: 381 FRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQ 440

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +   L     V ++++  Y + G I  A+KIF      D  SW  +I GY   G 
Sbjct: 441 LHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGH 500

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AI LFE +++ G+  D V++I +LTACSH G+V+ G  YF+ M  D  + P++ HY 
Sbjct: 501 SQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYG 560

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM+DLL RAG + DA  LI+++P++ D  +W  LL ACRI+G+V+ G  AA  +  L P 
Sbjct: 561 CMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPN 620

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G +I L+N++A  GKW EA+ +R LMKS+   K PG S V+ +D V  FV  DR
Sbjct: 621 CAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVFAFVSGDR 676



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 157/344 (45%), Gaps = 2/344 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      +  +F  +  +N V+W A++    +       L     M       +S  
Sbjct: 160 MYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYA 219

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
               L A A    L  G+ IH + ++KG + + F+ N+LT MY KCG L+   + F  + 
Sbjct: 220 YAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMR 279

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VS+  ++  Y Q       L  F  MR   +  +  +F   IS CAN A +K G++
Sbjct: 280 TLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQ 339

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +       L VANSI+  Y++ G +   +K+F  +  +D  +W+T+I  Y  +G 
Sbjct: 340 LHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGY 399

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + A      MR +G   +  +  ++L+ C    ++E+GK+    + +  ++ T M  + 
Sbjct: 400 GEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSA 459

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           ++ +  + G + +A K+  +   + D   W A++     +G+ +
Sbjct: 460 LIIMYAKCGSIAEASKIFMD-SWKDDIISWTAMISGYAEHGHSQ 502



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 167/357 (46%), Gaps = 6/357 (1%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVTLT 62
           K++   +A  LF  + +++ VSW  +++ +  +    +AL+L  +M + +E   +   L+
Sbjct: 61  KTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLS 120

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
             L  C  G     G  +H   ++ GL   +F+ +AL DMY K G +  +  VF+ +  R
Sbjct: 121 LGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTR 180

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + V++  +I G  +       L+ FS M    +++D  ++  A+ A A+  A+  G+ IH
Sbjct: 181 NAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIH 240

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
             T++K    + FVANS+   Y + G++D     F  +   D  SW T++  Y  +G+ D
Sbjct: 241 TQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKED 300

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
             +  F+ MR   V  +  ++ A+++ C++   ++ G++    +              ++
Sbjct: 301 CGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIM 360

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
            L  + G +    K+  ++    D   W  ++ A   Y  V  G  A E+L  ++ +
Sbjct: 361 TLYSKCGELASVSKVFCSMKFR-DIITWSTIIAA---YSQVGYGEEAFEYLSRMRSE 413



 Score = 41.2 bits (95), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 10/155 (6%)

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR-EDG 254
           AN+ L    ++  +  A  +FD LP +D  SW  +I GY    +   A+ LF  MR +  
Sbjct: 52  ANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSE 111

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY----ACMVDLLGRAGLM 310
           +  DP      L  C  G        Y   +   SVK   ++     + ++D+  + G +
Sbjct: 112 LRIDPFLLSLGLKTCGLG----LNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEI 167

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
             + K+   +P   +A  W A++      G  E G
Sbjct: 168 GRSCKVFDEMPTR-NAVTWTAVITGLVRAGYSEAG 201


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 149/446 (33%), Positives = 244/446 (54%), Gaps = 35/446 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA +    ++   F  + ++N+VSWN+M+  +AQ     +   L  EM       +  TL
Sbjct: 157 YASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTL 216

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----- 116
            ++L AC++   L  G+ +H R++  G   DL L +AL DMY KCG L +A+  F     
Sbjct: 217 VSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPI 276

Query: 117 ---------------------------NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                      ++  R+ VS+N +I  Y Q   C E+L L+++M
Sbjct: 277 KSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQM 336

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT-HLFVANSILDFYTRSGR 208
           +  G+  D ++ +  +SA   +  +  GK +H + IR +++   + + NS+LD Y + G+
Sbjct: 337 QSQGLAPDEITLVAVLSASGRIGDLTVGKMVH-LYIRDNIYNPDVSLVNSLLDMYAKCGQ 395

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           +D A  +F  +  ++  SWN +I G  M G     I  F +M  D    D ++++A+L+A
Sbjct: 396 VDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALLSA 455

Query: 269 CSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           CSHGGL+E G+ YF+ M+   +VK    HYACMVDLLGR G +E AV LIK +P++PD  
Sbjct: 456 CSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVV 515

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           +WGALLGACRI+GNV++G    + L  L+    G ++L+SN+  E  +W++  ++R+LMK
Sbjct: 516 VWGALLGACRIHGNVKIGRQVIKQLLELEGISGGLFVLISNLLYETHQWEDMKRLRKLMK 575

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVND 413
               +K+ G S ++  + + +F V D
Sbjct: 576 EWGTRKDMGVSSIEINNSIHEFGVED 601



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 154/327 (47%), Gaps = 8/327 (2%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  I   + V +N ++  +  +    +AL+L R M      PN  TL  V+ AC  
Sbjct: 65  ARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTI 124

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
                    +H   +R GL   +F+ NAL   YA  G L  ++  F+ +  R+ VS+N +
Sbjct: 125 AQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 184

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY+Q  D  E  SLF EMR  G   D  + +  + AC+    ++ G+ +H   +    
Sbjct: 185 IGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGS 244

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
              L + ++++D Y + G + +A + F+ +P+K   SW +++      G V+ A   F+ 
Sbjct: 245 RVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDH 304

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG- 308
           M E  +    VS+ A+++     G   +    +++MQ+  + P E+    ++   GR G 
Sbjct: 305 MPERNI----VSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGD 360

Query: 309 -LMEDAVKL-IKNLPVEPDANIWGALL 333
             +   V L I++    PD ++  +LL
Sbjct: 361 LTVGKMVHLYIRDNIYNPDVSLVNSLL 387



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 146/315 (46%), Gaps = 8/315 (2%)

Query: 79  EIHARIIRKG---LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYS 134
           ++HA ++  G      DL L +      A  G L  A+ +F+ I   D V YN +I  Y 
Sbjct: 29  QLHAHLLVHGSLSAASDLLLASYCALAKAGHGVLCHARRLFDGIPGPDRVMYNTIIRAYC 88

Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
            +S   E+L L   M   G+  +  +    + AC    A +    +HGV +R  L   +F
Sbjct: 89  NSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHALAVHGVALRLGLVGQVF 148

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           V N++L  Y  +G +  + + FD +  ++  SWN++I GY   G+     +LF  MR  G
Sbjct: 149 VGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQG 208

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
              D  + +++L ACS  G +E G+     M     +   +  + +VD+ G+ G +  A 
Sbjct: 209 FLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMAR 268

Query: 315 KLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374
           +  + +P++   + W ++L A   +G+V       +H   +  ++   +  + + Y + G
Sbjct: 269 RCFEMMPIKSVVS-WTSMLCAQTKHGSVNAARCWFDH---MPERNIVSWNAMISCYVQRG 324

Query: 375 KWDEASKVRELMKSR 389
           +  EA  +   M+S+
Sbjct: 325 QCHEALDLYNQMQSQ 339



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 32/180 (17%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  +   A  LF  +  +N+VSWN ++   A +   L  +   R M   +  P+ +T
Sbjct: 389 MYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGIT 448

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
              +L AC+ G  L  G+     +                            ++V+N+  
Sbjct: 449 FVALLSACSHGGLLETGQHYFESM----------------------------RHVYNVKH 480

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
             E  Y  ++    +     +++ L  EM    MK DVV +   + AC     +K G+++
Sbjct: 481 EVE-HYACMVDLLGRRGHLEKAVCLIKEM---PMKPDVVVWGALLGACRIHGNVKIGRQV 536


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 147/417 (35%), Positives = 238/417 (57%), Gaps = 7/417 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +   +  +F  + +KN VSW+A++    Q+    +   L R+M      P+   
Sbjct: 54  MYGKCDKYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGA 113

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + N + AC R H      +++  ++  GL+FD  + +A   M+A+CG + +A+ +F+ I 
Sbjct: 114 ILNAM-ACVRSH--EEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIM 170

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V++   I  Y +     E+L L  +M L G+  D ++ +G I AC+ LA+ +    
Sbjct: 171 SKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHI 230

Query: 180 IHGVTIRKHLHTHLF-VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +HG+      +  L  V  +++D Y + G +  A K+FD +  ++  +W+ +I GYGM G
Sbjct: 231 VHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHG 290

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A+NLF+ M+   V  D +++++IL+ACSH GLV +G + F+ M  D  V P   HY
Sbjct: 291 WGREALNLFDQMKA-SVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHY 349

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACMVD+LGRAG +++A   I+ +PV P+A +WGALLGACRI+ NV+L    A  LF L P
Sbjct: 350 ACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDP 409

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            + G Y++L N+Y   GK  EA  +R LMK+R  KK  G S ++ ++++  FV  DR
Sbjct: 410 HNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDR 466



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 164/379 (43%), Gaps = 56/379 (14%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P++ T   ++ AC+       G  IH  +++ G    +F++N+L  MY KC    L++ V
Sbjct: 8   PDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQV 67

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI-SACANLAA 173
           F+ +  ++ VS++ +I    Q   C E  SLF +M   G +       GAI +A A + +
Sbjct: 68  FDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPS----RGAILNAMACVRS 123

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
            ++  +++ V +   L     V ++    + R GR+++A K+FD +  KD  +W T I  
Sbjct: 124 HEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEA 183

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HG---------- 272
           Y        A+ L + M   G+  D ++ + ++ ACS           HG          
Sbjct: 184 YVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQ 243

Query: 273 ---------------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317
                          G +   +K FD MQ  ++    + ++ M+   G  G   +A+ L 
Sbjct: 244 LLAVETALIDLYVKCGSLTYARKVFDGMQERNI----ITWSAMISGYGMHGWGREALNLF 299

Query: 318 KNL--PVEPDANIWGALLGACRIYGNVELG-----AWAAEHLFMLKPQHCGYYILLSNMY 370
             +   V+PD   + ++L AC   G V  G     + A +     +P+H   Y  + ++ 
Sbjct: 300 DQMKASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEH---YACMVDIL 356

Query: 371 AEAGKWDEASKVRELMKSR 389
             AGK DEA    E M  R
Sbjct: 357 GRAGKLDEACDFIERMPVR 375



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 119/278 (42%), Gaps = 41/278 (14%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M  LG++ D  +F   I AC+ L   + G  IH   ++    + +F++NS++  Y +  +
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 209 IDLANKIFDCLPVKDSASWNTLI----------LGYGMLGEV------------------ 240
            +L+ ++FD +P K++ SW+ +I           G+ +  ++                  
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMAC 120

Query: 241 ----DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
               + A +++  + E+G+ +D     A     +  G VE  +K FD + +  +    + 
Sbjct: 121 VRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDL----VT 176

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVE---PDANIWGALLGACRIYGNVELGAWAAEHLF 353
           +A  ++   +A +  +A+ L+K + ++   PDA     ++ AC    + +L       + 
Sbjct: 177 WATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIIT 236

Query: 354 --MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
                 Q       L ++Y + G    A KV + M+ R
Sbjct: 237 TGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQER 274


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 143/416 (34%), Positives = 233/416 (56%), Gaps = 36/416 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           MYA+  RP +A  +F  +  +++VSWNAM++ FA   L  +A+ + RE+  +    P++ 
Sbjct: 56  MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 115

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T+ ++LP+  +                                 A+   + L + VF+ +
Sbjct: 116 TMASILPSMGK---------------------------------ARVEDIALLKGVFDEM 142

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            F+  +S+N ++  Y+      E++ LF  M+  G++ D V+    + +C  ++A+  GK
Sbjct: 143 RFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGK 202

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH V  R+ + + + + N+++D Y   G +  A  +FD +  +D  SW ++I  YG  G
Sbjct: 203 RIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHG 262

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               AI+LFE M   G+  D ++++AIL ACSH GL++ GK YF  M ++  + P   HY
Sbjct: 263 HGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHY 322

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACMVDLLGRAG + +A   I  +P++P+  +WGALLGACRI+ N+++G  AA+ L  L P
Sbjct: 323 ACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAP 382

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +  GYY+LLSN+YA AG+W + S VR +M+S+  KK PG S  +  D V  F + D
Sbjct: 383 KQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGD 438



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 108/233 (46%), Gaps = 15/233 (6%)

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
           +CA    +  G++IH  T R  L  ++FVA+S +  Y R GR D A ++F+ +  +D  S
Sbjct: 21  SCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVS 80

Query: 227 WNTLILGYGMLGEVDTAINLF-EAMREDGVGYDPVSYIAILTACSHGGLVEKG--KKYFD 283
           WN +I G+   G    A+++F E +       D  +  +IL +     + +    K  FD
Sbjct: 81  WNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFD 140

Query: 284 EMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYG 340
           EM+   +    + +  M+ +     +  +AV+L   +    +EPDA     +L +C    
Sbjct: 141 EMRFKGL----ISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVS 196

Query: 341 NVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDEASKVRELMKSRE 390
            + LG     H  + + + C   +L   L +MYA  G   EA  V + M +R+
Sbjct: 197 ALSLGKRI--HEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRD 247


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 143/416 (34%), Positives = 233/416 (56%), Gaps = 36/416 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           MYA+  RP +A  +F  +  +++VSWNAM++ FA   L  +A+ + RE+  +    P++ 
Sbjct: 166 MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 225

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T+ ++LP+  +                                 A+   + L + VF+ +
Sbjct: 226 TMASILPSMGK---------------------------------ARVEDIALLKGVFDEM 252

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            F+  +S+N ++  Y+      E++ LF  M+  G++ D V+    + +C  ++A+  GK
Sbjct: 253 RFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGK 312

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH V  R+ + + + + N+++D Y   G +  A  +FD +  +D  SW ++I  YG  G
Sbjct: 313 RIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHG 372

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               AI+LFE M   G+  D ++++AIL ACSH GL++ GK YF  M ++  + P   HY
Sbjct: 373 HGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHY 432

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACMVDLLGRAG + +A   I  +P++P+  +WGALLGACRI+ N+++G  AA+ L  L P
Sbjct: 433 ACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAP 492

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +  GYY+LLSN+YA AG+W + S VR +M+S+  KK PG S  +  D V  F + D
Sbjct: 493 KQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGD 548



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 132/281 (46%), Gaps = 17/281 (6%)

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK--HDVVSFMGAISACANLAAIKQGK 178
           R  V +N+L+ G +  S   ++L LF+ MR  G     D  ++  A+ +CA    +  G+
Sbjct: 83  RTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVLGR 142

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH  T R  L  ++FVA+S +  Y R GR D A ++F+ +  +D  SWN +I G+   G
Sbjct: 143 QIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAG 202

Query: 239 EVDTAINLF-EAMREDGVGYDPVSYIAILTACSHGGLVEKG--KKYFDEMQADSVKPTEM 295
               A+++F E +       D  +  +IL +     + +    K  FDEM+   +    +
Sbjct: 203 LFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGL----I 258

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEHL 352
            +  M+ +     +  +AV+L   +    +EPDA     +L +C     + LG     H 
Sbjct: 259 SWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRI--HE 316

Query: 353 FMLKPQHCGYYIL---LSNMYAEAGKWDEASKVRELMKSRE 390
            + + + C   +L   L +MYA  G   EA  V + M +R+
Sbjct: 317 VIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRD 357


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 145/410 (35%), Positives = 240/410 (58%), Gaps = 10/410 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +  R AEA  LF  +  +N++SW  M++ + QN     A +L   MP  NE    V+ 
Sbjct: 181 YCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNE----VSW 236

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T +L    +G  +    E+   +  K +       NA+   + + G +  A+ VF+ I  
Sbjct: 237 TAMLMGYTQGGRIEEASELFDAMPVKAV----VACNAMILGFGQNGEVAKARQVFDQIRE 292

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D+ +++ +I  Y +     E+L+LF+ M+  G++ +  S +  +S CA+LA++  G+++
Sbjct: 293 KDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQV 352

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++    + +FVA+ ++  Y + G +  A +IFD    KD   WN++I GY   G V
Sbjct: 353 HAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLV 412

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYAC 299
           + A+ +F  M   G+  D V+++ +L+ACS+ G V++G + F+ M++   V+P   HYAC
Sbjct: 413 EEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYAC 472

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           MVDLLGRAGL+ DA+ LI+ +PVE DA IWGALLGACR + N+ L   AA+ L  L+P++
Sbjct: 473 MVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKN 532

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
            G YILLSN+YA  G+W + +++R  M+ ++  K+PGCSW++    V  F
Sbjct: 533 AGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMF 582



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 141/291 (48%), Gaps = 21/291 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +++RP EA YLF  + E+N VSWN +++ + +NR+  +A +    MP      N V+ 
Sbjct: 57  YFQNNRPREARYLFDKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPER----NVVSW 112

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
           T ++    +   +   + +  ++  K +     +   L  +      ++ A+ +F+I   
Sbjct: 113 TAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRR----IDEARGLFDIMPV 168

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D V+   +I GY Q    +E+  LF EM     + +V+S+   IS       +   +++
Sbjct: 169 KDVVARTNMISGYCQEGRLAEARELFDEMP----RRNVISWTTMISGYVQNGQVDVARKL 224

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
             V   K+  +      ++L  YT+ GRI+ A+++FD +PVK   + N +ILG+G  GEV
Sbjct: 225 FEVMPEKNEVSW----TAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEV 280

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
             A  +F+ +RE     D  ++ A++      G   +    F  MQ + V+
Sbjct: 281 AKARQVFDQIREK----DDGTWSAMIKVYERKGFEVEALNLFALMQREGVQ 327



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 144/335 (42%), Gaps = 61/335 (18%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+  +   A  +F  + +K IVSWN+MVA + QN    +A  L  +MP  N        
Sbjct: 26  YARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVS----- 80

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
                                              N L   Y K   ++ A+  F+ +  
Sbjct: 81  ----------------------------------WNGLISGYVKNRMVSEARKAFDTMPE 106

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+  ++ GY Q    SE+ +LF +M     + +VVS+   +     +  I + + +
Sbjct: 107 RNVVSWTAMVRGYVQEGLVSEAETLFWQMP----EKNVVSWTVMLGGLIQVRRIDEARGL 162

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
             +   K     +    +++  Y + GR+  A ++FD +P ++  SW T+I GY   G+V
Sbjct: 163 FDIMPVK----DVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQV 218

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC- 299
           D A  LFE M E     + VS+ A+L   + GG +E+  + FD M      P +   AC 
Sbjct: 219 DVARKLFEVMPEK----NEVSWTAMLMGYTQGGRIEEASELFDAM------PVKAVVACN 268

Query: 300 -MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            M+   G+ G +  A ++   +  E D   W A++
Sbjct: 269 AMILGFGQNGEVAKARQVFDQIR-EKDDGTWSAMI 302



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 18/207 (8%)

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
           R++  +     NS +  Y R G+I+ A ++FD +P K   SWN+++ GY        A  
Sbjct: 9   RRYCTSVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARY 68

Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           LF+ M E     + VS+  +++      +V + +K FD M   +V    + +  MV    
Sbjct: 69  LFDKMPER----NTVSWNGLISGYVKNRMVSEARKAFDTMPERNV----VSWTAMVRGYV 120

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365
           + GL+ +A  L   +P E +   W  +LG       ++     A  LF + P      + 
Sbjct: 121 QEGLVSEAETLFWQMP-EKNVVSWTVMLGGLIQVRRID----EARGLFDIMP--VKDVVA 173

Query: 366 LSNM---YAEAGKWDEASKVRELMKSR 389
            +NM   Y + G+  EA ++ + M  R
Sbjct: 174 RTNMISGYCQEGRLAEARELFDEMPRR 200



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 6/104 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F   + K+IV WN+++  +AQ+ L  +ALQ+  EM       + VT
Sbjct: 374 MYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVT 433

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104
              VL AC+    ++ G EI   +  K      +L    T+ YA
Sbjct: 434 FVGVLSACSYTGKVKEGLEIFESMKSK------YLVEPKTEHYA 471


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 152/413 (36%), Positives = 244/413 (59%), Gaps = 9/413 (2%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVL---P 66
           +A   F  I + N V   AM + + +N L   +L+L R M I ++  + V     L    
Sbjct: 2   DARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAM-IASDSASVVDEAAALVAFS 60

Query: 67  ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC--LNLAQNVFNISFRDEV 124
           A AR         +HA I + G   +  + N + D YAK G   L +A+ VF+   RD V
Sbjct: 61  ASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMERDVV 120

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAIKQGKEIHG 182
           S+N +I  Y+Q    +E++ L+S+M  +G  +K + V+    + ACA+  AI+ GK IH 
Sbjct: 121 SWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHN 180

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
             +R  L  +++V  SI+D Y++ GR+++A++ F  +  K+  SW+ +I GYGM G    
Sbjct: 181 QVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQE 240

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMV 301
           A+ +F  M+  G+  + +++I++L ACSH GL+++G+ +++ M+ +  ++    HY CMV
Sbjct: 241 ALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMV 300

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361
           DLLGRAG +++A  LIK + V+PDA IWGALL ACRI+ NVEL   + + LF L   + G
Sbjct: 301 DLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSG 360

Query: 362 YYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           YY+LLSN+YAEAG W +  ++R L+K+R  +K PG S  + + ++  F V D+
Sbjct: 361 YYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDK 413



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 134/237 (56%), Gaps = 8/237 (3%)

Query: 2   YAKS-SRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFP-NS 58
           YAK  SR  E +    +  E+++VSWN+M+A +AQN +  +A+ L  +M  +      N+
Sbjct: 97  YAKGGSRDLEVARKVFDTMERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNA 156

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
           V L+ VL ACA    ++ GK IH +++R GL  ++++  ++ DMY+KCG + +A   F  
Sbjct: 157 VALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRK 216

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           I  ++ +S++ +I GY       E+L +F+EM+  G++ + ++F+  ++AC++   + +G
Sbjct: 217 IKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEG 276

Query: 178 KEIHGVTIRKHLHTHLFVAN--SILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
           +  +   +++       V +   ++D   R+G +D A  +   + VK D+A W  L+
Sbjct: 277 RYWYN-AMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALL 332



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  R   AS  F  I EKNI+SW+AM+  +  +    +AL++  EM      PN +T
Sbjct: 200 MYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYIT 259

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             +VL AC+    L  G+  +  + ++ G+   +     + D+  + GCL+ A ++  
Sbjct: 260 FISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIK 317


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 143/417 (34%), Positives = 237/417 (56%), Gaps = 3/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F  +  K++V+WN+M+  +         ++++  M I    P+  T
Sbjct: 252 MYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTT 311

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           LT++L AC+R   L  GK IH  +IR  +N D+++  +L D+Y KCG  NLA+ VF+ + 
Sbjct: 312 LTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQ 371

Query: 121 RDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           +D   S+N++I  Y    +  +++ ++ +M  +G+K DVV+F   + AC+ LAA+++GK+
Sbjct: 372 KDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQ 431

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH       L T   + +++LD Y++ G    A +IF+ +P KD  SW  +I  YG  G+
Sbjct: 432 IHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQ 491

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+  F+ M++ G+  D V+ +A+L+AC H GL+++G K+F +M++   ++P   HY+
Sbjct: 492 PREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYS 551

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           CM+D+LGRAG + +A ++I+  P   D A +   L  AC ++    LG   A  L    P
Sbjct: 552 CMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYP 611

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
                Y++L N+YA    WD A +VR  MK    +K PGCSW++  D+V  F   DR
Sbjct: 612 DDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFFAEDR 668



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/392 (29%), Positives = 197/392 (50%), Gaps = 5/392 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK +    +  +F  + E+++ SWN +++ F Q+    KAL+L   M      PNSV+
Sbjct: 151 MYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVS 210

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           LT  + AC+R  +L  GKEIH + ++KG   D ++ +AL DMY KC CL +A+ VF    
Sbjct: 211 LTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMP 270

Query: 121 RDE-VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           R   V++N +I GY    D    + + + M + G +    +    + AC+    +  GK 
Sbjct: 271 RKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKF 330

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  IR  ++  ++V  S++D Y + G  +LA  +F       + SWN +I  Y  +G 
Sbjct: 331 IHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGN 390

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ +++ M   GV  D V++ ++L ACS    +EKGK+    +    ++  E+  + 
Sbjct: 391 WFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSA 450

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL--FMLKP 357
           ++D+  + G  ++A ++  ++P + D   W  ++ A   +G      +  + +  F LKP
Sbjct: 451 LLDMYSKCGNEKEAFRIFNSIP-KKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKP 509

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
                  +LS     AG  DE  K    M+S+
Sbjct: 510 DGVTLLAVLSAC-GHAGLIDEGLKFFSQMRSK 540



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 132/270 (48%), Gaps = 8/270 (2%)

Query: 58  SVTLTNVLPACARG-HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           S  L ++L  C      LR  K +H RI+  GL  D+ L  +L ++Y  C     A++VF
Sbjct: 3   SSKLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVF 62

Query: 117 -NISFRDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMK---HDVVSFMGAISACANL 171
            N   R +V  +N L+ GYS+ S   ++L +F   RLL       D  +F   I A   L
Sbjct: 63  ENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFK--RLLNCSICVPDSFTFPNVIKAYGAL 120

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
                G+ IH + ++      + VA+S++  Y +    + + ++FD +P +D ASWNT+I
Sbjct: 121 GREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVI 180

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
             +   GE + A+ LF  M   G   + VS    ++ACS    +E+GK+   +      +
Sbjct: 181 SCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFE 240

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
             E   + +VD+ G+   +E A ++ + +P
Sbjct: 241 LDEYVNSALVDMYGKCDCLEVAREVFQKMP 270


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 149/419 (35%), Positives = 243/419 (57%), Gaps = 7/419 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN---RLELKALQLVREMPIHNEFPN 57
           MYAK      A  +F  +  K++V+W +M+  ++Q+        AL L  EM      PN
Sbjct: 135 MYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPN 194

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
              L++++  C        GK+IH    + G   ++F+ ++L DMYA+CG L  ++ VF+
Sbjct: 195 EFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFD 254

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  ++EVS+N LI G+++  +  E+L LF +M+  G      ++   + + +   +++Q
Sbjct: 255 ELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQ 314

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK +H   ++       +V N++L  Y +SG I  A K+FD L   D  S N++++GY  
Sbjct: 315 GKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQ 374

Query: 237 LGEVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
            G    A+ LFE M    V  +P  ++++++LTACSH GL+++G  YF+ M+   ++P  
Sbjct: 375 HGLGKEAVELFEEMML-WVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKL 433

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HY  +VDL GRAGL++ A   I+ +P+EP+A IWGALLGA +++ N E+GA+AA+ +  
Sbjct: 434 SHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLE 493

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           L P + G + LLSN+YA AG+W + +KVR+ MK    KK P CSWV+  + V  F  ND
Sbjct: 494 LDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSAND 552



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 176/372 (47%), Gaps = 42/372 (11%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P+      +L  C     L+ GK +H  ++      DL + N++  MYAKCG L +A+ V
Sbjct: 89  PDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQV 148

Query: 116 FN-ISFRDEVSYNILIVGYSQ---TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
           F+ +  +D V++  +I GYSQ    S  + +L LF EM   G++ +  +    +  C  L
Sbjct: 149 FDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFL 208

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
            +   GK+IHG   +     ++FV +S++D Y R G +  +  +FD L  K+  SWN LI
Sbjct: 209 GSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALI 268

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-- 289
            G+   GE + A+ LF  M+ +G G    +Y A+L + S  G +E+GK     M      
Sbjct: 269 SGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKK 328

Query: 290 ----VKPTEMH-----------------------YACMVDLLGRA--GLMEDAVKLIKNL 320
               V  T +H                        +C   L+G A  GL ++AV+L + +
Sbjct: 329 LVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEM 388

Query: 321 ----PVEPDANIWGALLGACRIYGNVELGAWAAEHL--FMLKPQHCGYYILLSNMYAEAG 374
                +EP+   + ++L AC   G ++ G +  E +  + L+P+   +Y  + +++  AG
Sbjct: 389 MLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPK-LSHYTTVVDLFGRAG 447

Query: 375 KWDEASKVRELM 386
             D+A    E M
Sbjct: 448 LLDQAKSFIEEM 459


>gi|147797310|emb|CAN76007.1| hypothetical protein VITISV_013341 [Vitis vinifera]
          Length = 666

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 148/438 (33%), Positives = 256/438 (58%), Gaps = 21/438 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A ++F++I +K +V W A++A++  N     A+++ REM      PN VT
Sbjct: 225 MYGKCGFEELARFVFYSIVDKCVVVWTALIASYVCNECPCPAIEVFREMIYEGMEPNCVT 284

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK--GLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
           L++++ AC++   L  GKEIH  I R+      D+F++ +L DMY KC  +     +F  
Sbjct: 285 LSSLISACSQIPDLMLGKEIHGFITRRRAATTPDVFISTSLIDMYGKCNYMVYGHRIFE- 343

Query: 119 SFRDEVS--------YNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACA 169
             +D+          +N  I GY + +  S++  +F  +    G+  + V+    +  CA
Sbjct: 344 --KDKTYPRCNTTALWNATIAGYMENNFVSDAWDVFRSITHGEGINPNTVTMSIVLPLCA 401

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD-CLPVKDSASWN 228
             + +  GKEIH   +R  L   +FV+N ++D Y++ G++ LA   F+  +  K+  SW 
Sbjct: 402 RSSQLLSGKEIHCYALRNGLDQEIFVSNGLIDMYSKCGKLKLAENQFNRMMNEKNRISWT 461

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           ++I G+G+ G+ + AI +FE+M  + V  D ++++A+++ACSH GL+E+G +YF+EM  +
Sbjct: 462 SMIDGHGIHGDGEGAIRVFESMVREEVKPDHITFVALISACSHAGLLEQGLRYFEEMSRE 521

Query: 289 -SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAW 347
             + P E +Y  +VDLL RAG  ++A  LI+ +P++P AN+WGALLGACRI+GNV+    
Sbjct: 522 YGIVPVEENYGTVVDLLARAGRFKEARDLIERMPIKPGANVWGALLGACRIHGNVKEAEL 581

Query: 348 AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQ 407
           AA  L  L+P+  G+  LL+++Y EAG+ + A  +R  M+    +K  G SW++T++E+ 
Sbjct: 582 AAHCLQKLEPKDSGFQKLLASIYLEAGRRENAEDLRSQMREMGMEKRQGFSWLETKEEIY 641

Query: 408 DFV-----VNDRMKTFTP 420
           + +     + D  +T++P
Sbjct: 642 ESIDSDKHIPDTTETWSP 659



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 202/445 (45%), Gaps = 64/445 (14%)

Query: 2   YAKSSRPAEASYLFHNIAEK---NIVSWNAMVANFAQNRLELKALQLVREM--------- 49
           Y + S    A  LF  + E    N V+W+A++A +AQN     AL + +EM         
Sbjct: 114 YFRESHCGAARELFDRMREAHLANDVTWSAVIAGYAQNSRPKDALFVFKEMRGECDEMGS 173

Query: 50  PIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKG--LNFDLFLTNALTDMYAKCG 107
           P+    P S T+T+V  AC +   +  G++IH  +++    +  D F+ + + DMY KCG
Sbjct: 174 PLS---PMSHTITSVFSACGQLRDVILGEQIHGYVMKISSYVENDAFVGSVVVDMYGKCG 230

Query: 108 CLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS 166
              LA+ VF +I  +  V +  LI  Y        ++ +F EM   GM+ + V+    IS
Sbjct: 231 FEELARFVFYSIVDKCVVVWTALIASYVCNECPCPAIEVFREMIYEGMEPNCVTLSSLIS 290

Query: 167 ACANLAAIKQGKEIHGVTIRKHLHT--HLFVANSILDFYTRSGRIDLANKIFD---CLP- 220
           AC+ +  +  GKEIHG   R+   T   +F++ S++D Y +   +   ++IF+     P 
Sbjct: 291 ACSQIPDLMLGKEIHGFITRRRAATTPDVFISTSLIDMYGKCNYMVYGHRIFEKDKTYPR 350

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMRE-DGVGYDPVSYIAILTACSHG------- 272
              +A WN  I GY     V  A ++F ++   +G+  + V+   +L  C+         
Sbjct: 351 CNTTALWNATIAGYMENNFVSDAWDVFRSITHGEGINPNTVTMSIVLPLCARSSQLLSGK 410

Query: 273 -------------------GLVEK----GKKYFDEMQADSV--KPTEMHYACMVDLLGRA 307
                              GL++     GK    E Q + +  +   + +  M+D  G  
Sbjct: 411 EIHCYALRNGLDQEIFVSNGLIDMYSKCGKLKLAENQFNRMMNEKNRISWTSMIDGHGIH 470

Query: 308 GLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHL---FMLKPQHCG 361
           G  E A+++ +++    V+PD   + AL+ AC   G +E G    E +   + + P    
Sbjct: 471 GDGEGAIRVFESMVREEVKPDHITFVALISACSHAGLLEQGLRYFEEMSREYGIVPVEEN 530

Query: 362 YYILLSNMYAEAGKWDEASKVRELM 386
           Y  ++ ++ A AG++ EA  + E M
Sbjct: 531 YGTVV-DLLARAGRFKEARDLIERM 554



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 133/311 (42%), Gaps = 55/311 (17%)

Query: 77  GKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-------------IS--F 120
            + +HA   ++G ++ D F+TN L  +Y++CG    A+ +F+             IS  F
Sbjct: 56  AQPLHADAAKRGFVSSDPFVTNDLLTVYSRCGSPQSARKMFDEIPVPGPFCWNTMISCYF 115

Query: 121 RD--------------------EVSYNILIVGYSQTSDCSESLSLFSEMR---------L 151
           R+                    +V+++ +I GY+Q S   ++L +F EMR         L
Sbjct: 116 RESHCGAARELFDRMREAHLANDVTWSAVIAGYAQNSRPKDALFVFKEMRGECDEMGSPL 175

Query: 152 LGMKHDVVSFMGAISACANLAAIKQGKEIHG--VTIRKHLHTHLFVANSILDFYTRSGRI 209
             M H + S     SAC  L  +  G++IHG  + I  ++    FV + ++D Y + G  
Sbjct: 176 SPMSHTITS---VFSACGQLRDVILGEQIHGYVMKISSYVENDAFVGSVVVDMYGKCGFE 232

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           +LA  +F  +  K    W  LI  Y        AI +F  M  +G+  + V+  ++++AC
Sbjct: 233 ELARFVFYSIVDKCVVVWTALIASYVCNECPCPAIEVFREMIYEGMEPNCVTLSSLISAC 292

Query: 270 SHGGLVEKGKKY--FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           S    +  GK+   F   +  +  P       ++D+ G+   M    ++ +     P  N
Sbjct: 293 SQIPDLMLGKEIHGFITRRRAATTPDVFISTSLIDMYGKCNYMVYGHRIFEKDKTYPRCN 352

Query: 328 ---IWGALLGA 335
              +W A +  
Sbjct: 353 TTALWNATIAG 363



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 3/166 (1%)

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA-IKQGKEIHG- 182
           S N L++ YS+     E  + + ++R  G + +  +F   +   ++  + +   + +H  
Sbjct: 3   SQNALLILYSEQGKWRELTAFYHQIRKQGFEPNSFTFSSLLKCLSSSQSPLLHAQPLHAD 62

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
              R  + +  FV N +L  Y+R G    A K+FD +PV     WNT+I  Y        
Sbjct: 63  AAKRGFVSSDPFVTNDLLTVYSRCGSPQSARKMFDEIPVPGPFCWNTMISCYFRESHCGA 122

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           A  LF+ MRE  +  D V++ A++   +     +     F EM+ +
Sbjct: 123 ARELFDRMREAHLAND-VTWSAVIAGYAQNSRPKDALFVFKEMRGE 167


>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
          Length = 773

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 142/405 (35%), Positives = 234/405 (57%), Gaps = 5/405 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP---N 57
           MY K      A  +F  + +++  SWN MV  + +   ++K L+L REM + +++     
Sbjct: 365 MYGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYCKAGCDVKCLELYREMQLRDKYEFWCV 424

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           + +L + + +C+R   LR G+  H   I+  L+ D  + N L  MY +CG  + A  +F 
Sbjct: 425 ADSLVSAISSCSRLAELRLGRSAHCYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFG 484

Query: 118 ISF--RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           ++    D V++N LI  Y+     + ++SL+ +M + G+  +  + +  ISACANL A++
Sbjct: 485 LAKLKGDVVTWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPNSTTLITVISACANLVALE 544

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           +G++IH           + +  +++D Y + G++ +A +IFD +   D  +WN +I GYG
Sbjct: 545 RGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGIARRIFDSMLQHDVVAWNVMISGYG 604

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
           M GE   A+ LF  M    +  + V+++AIL+A  H GL+E+G+K F  M   S++P   
Sbjct: 605 MHGEAKQALELFGKMEGGSIKPNGVTFLAILSALCHSGLLEEGRKVFTRMGKYSLEPNLK 664

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYACMVDLLG++G +++A  ++  +P+EPD  IWG LL AC+++ N E+G   A+  F  
Sbjct: 665 HYACMVDLLGKSGHLQEAEDMVLAMPIEPDGGIWGTLLSACKLHDNFEMGLRIAKKAFAS 724

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
            P++ GYYIL+SN Y  A KWDE  K+RE MK+   +K  G S V
Sbjct: 725 DPENEGYYILISNSYGGAKKWDEIEKLRETMKNLGVQKGVGWSAV 769



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 157/341 (46%), Gaps = 8/341 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKAL----QLVREMPIHNEFP 56
           MYA+     +A  +F  + E+++V+W A+++   +N    + L    ++VR     +  P
Sbjct: 159 MYARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGESGEGLRYLVEMVRLAGDGSVRP 218

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           NS T+ + L AC     L  G+ +H  +++ G+     + +AL  MY+KC     A  +F
Sbjct: 219 NSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYSTEDACALF 278

Query: 117 -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
             +  +D VS+  LI  Y +    +E++ LF +M   G++ D +     +S   N   + 
Sbjct: 279 LELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLGNNGNVH 338

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            GK  H V  +++    + + N+++  Y +   +D A ++F  L  +D+ SWN +++GY 
Sbjct: 339 GGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYC 398

Query: 236 MLGEVDTAINLFEAMR-EDGVGYDPV--SYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
             G     + L+  M+  D   +  V  S ++ +++CS    +  G+          +  
Sbjct: 399 KAGCDVKCLELYREMQLRDKYEFWCVADSLVSAISSCSRLAELRLGRSAHCYSIKHLLDE 458

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                  ++ + GR G  + A K+     ++ D   W  L+
Sbjct: 459 DSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLI 499



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 111/269 (41%), Gaps = 11/269 (4%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-DEVSYNILIVGYSQTS 137
            +HA  +  GL     L   L   Y+  G   LA   F+ S R D   +N LI  +   S
Sbjct: 31  RVHALAVTSGLYQRPDLAAKLVSAYSSAGRPGLAALAFSASPRPDAFLWNSLIRTHHCAS 90

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT----HL 193
           D   +LS    M   G +    +   A SA A L A+  G  +H   +R  L       +
Sbjct: 91  DFVAALSAHRRMLASGARPSPFTAPLAASASAELGALGVGAAVHAYCVRYGLLVGDGDSV 150

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN-LFEAMRE 252
            VA+S++  Y R G +  A K+F+ +P +D  +W  +I G    GE    +  L E +R 
Sbjct: 151 AVASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGESGEGLRYLVEMVRL 210

Query: 253 DGVGY---DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
            G G    +  +  + L AC     +  G+     +    +  + M  + +  +  +   
Sbjct: 211 AGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYS 270

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGA-CR 337
            EDA  L   LP E D   W +L+G  CR
Sbjct: 271 TEDACALFLELP-EKDVVSWTSLIGIYCR 298


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 155/438 (35%), Positives = 245/438 (55%), Gaps = 33/438 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y + ++  +A  LF  + EK+ VSW AM+  + +    L+A +++  MP    + N    
Sbjct: 274 YVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMP----YKNIAAQ 329

Query: 62  TNVLPACARGHFLRPGKEIHARI-IRKGLNFDLFLT------------------------ 96
           T ++    +   +    EI ++I +R  + ++  +T                        
Sbjct: 330 TAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMV 389

Query: 97  --NALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153
             N +   YA+ G ++ A  +FN +  R+ VS+N LI GY Q     E+L+ F  M+  G
Sbjct: 390 SWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQG 449

Query: 154 MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
            K D  + +  + A ANLAA+  G ++H +TI+      LFV N+IL  Y +SGR+  A 
Sbjct: 450 EKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAE 509

Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
            +F  +  KD  SWN+LI GY + G    A+ LFE M   G+  D V++  +L+AC+HGG
Sbjct: 510 NVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGG 569

Query: 274 LVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
            V++G   F  M +  S+KP   HYAC+++LLGR G +E+AV++++ +     A IWGAL
Sbjct: 570 FVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGAL 629

Query: 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392
           L ACRI+ N+EL  ++AE L  L+PQ+   Y+LLSNM+AEAG+WD   +VR LMK  +A+
Sbjct: 630 LWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAE 689

Query: 393 KNPGCSWVQTRDEVQDFV 410
           K PGCSW++  +++  F+
Sbjct: 690 KQPGCSWIEIDNQLHCFL 707



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 180/393 (45%), Gaps = 65/393 (16%)

Query: 3   AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLT 62
            +S R  EA  +F  + E+NIV++N+M++ +A+N     A +L   MP  N     V+  
Sbjct: 26  GRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRN----LVSWN 81

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI--SF 120
           +++        +     +  R+ ++    D++    +   Y + G L  A+ +FN+    
Sbjct: 82  SMIAGYLHNELVEDAARLFDRMFKR----DIYSWTLMITCYTRIGELEKARELFNLLPDK 137

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D V  N LI GY++     E+  LF EM    +  +VVS+                   
Sbjct: 138 QDTVCRNALIAGYAKKRLFREAKKLFDEM----LVKNVVSW------------------- 174

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
                           NSIL  YT++G++ L  + F+ +  ++  SWN ++ GY  +G++
Sbjct: 175 ----------------NSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDL 218

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           D+A   F+ +    V    VS++ +L+  +H G + + +  F+EM   ++    + +  M
Sbjct: 219 DSAWMFFKKIPTPNV----VSWVTMLSGFAHYGRMTEARNLFNEMPTKNL----VSWNAM 270

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAW--AAEHLFMLKPQ 358
           +    R   ++DA KL   +P E D+  W A+     I G V +G    A E L ++  +
Sbjct: 271 IGAYVRENQIDDAYKLFMEMP-EKDSVSWTAM-----INGYVRVGKLLQAREILNLMPYK 324

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
           +      + N Y ++G+ DEA+++   +  R++
Sbjct: 325 NIAAQTAMINGYLQSGRMDEANEIFSQISVRDS 357



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 46/77 (59%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS R  EA  +F  I  K++VSWN+++A +A N    +A++L   MP+    P+ VT
Sbjct: 498 MYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVT 557

Query: 61  LTNVLPACARGHFLRPG 77
            T +L AC  G F+  G
Sbjct: 558 FTGLLSACNHGGFVDQG 574



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 19/163 (11%)

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
           +++F  N  +    RSGRI+ A  +F  +  ++  ++N++I  Y   G +  A  LF+ M
Sbjct: 13  SYVFTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLM 72

Query: 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
            +  +    VS+ +++    H  LVE   + FD M     K     +  M+    R G +
Sbjct: 73  PQRNL----VSWNSMIAGYLHNELVEDAARLFDRM----FKRDIYSWTLMITCYTRIGEL 124

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
           E A +L   LP + D          CR   N  +  +A + LF
Sbjct: 125 EKARELFNLLPDKQDT--------VCR---NALIAGYAKKRLF 156


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 145/416 (34%), Positives = 236/416 (56%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y++     +A  +F  +  K+ V+W+ MVA F      ++AL +   M  H    + V 
Sbjct: 155 VYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVV 214

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-S 119
           +  V+ AC      R G  +H R +R G+  D+ +  +L DMYAK G  ++A+ VF +  
Sbjct: 215 MVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMP 274

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           +R+ VS+N LI G++Q     E+L LF EM   G++ D  + + A+ ACA++  +K GK 
Sbjct: 275 YRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKS 334

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R+ L     +  ++LD Y++ G ++ A K+F+ L  +D   WN +I   G  G 
Sbjct: 335 IHGFILRR-LEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGC 393

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ LF+ + E G+  D  ++ ++L+A SH GLVE+GK +FD M  +  ++PTE H  
Sbjct: 394 GHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCV 453

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLL R+GL+E+A +++ ++  EP   IW ALL  C     +ELG   A+ +   +P+
Sbjct: 454 CVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPE 513

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             G   L+SN+YA A KWD+  ++R+LMK   +KK PG S ++       FV+ D+
Sbjct: 514 DIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQ 569



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 186/380 (48%), Gaps = 20/380 (5%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           AE++      +   I +WNA++A  ++      AL++ R +P  +  P+S T T  L AC
Sbjct: 63  AESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALP-SSARPDSTTFTLALTAC 121

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
           AR   L   + +  R    G   D+F+ +AL  +Y++CG +  A  VF+ +  +D V+++
Sbjct: 122 ARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWS 181

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            ++ G+       E+L ++S MR  G+  D V  +G I AC      + G  +HG  +R 
Sbjct: 182 TMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRH 241

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            +   + +A S++D Y ++G  D+A ++F  +P +++ SWN LI G+   G  D A++LF
Sbjct: 242 GMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLF 301

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM-----VD 302
             M   G+  D  + ++ L AC+  G ++ GK     +         + + C+     +D
Sbjct: 302 REMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFIL------RRLEFQCILGTAVLD 355

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY--GNVELGAWAAEHLFMLKPQHC 360
           +  + G +E A KL   L    D  +W A++  C  +  G+  L  +   +   +KP H 
Sbjct: 356 MYSKCGSLESARKLFNKLSSR-DLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHA 414

Query: 361 GYYILLSNM----YAEAGKW 376
            +  LLS +      E GK+
Sbjct: 415 TFASLLSALSHSGLVEEGKF 434


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 150/383 (39%), Positives = 224/383 (58%), Gaps = 4/383 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++     EAS +F    EK++++W +M+  +  N     AL L   M +    PN+VT
Sbjct: 329 MYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVT 388

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L ++L ACA    L+ GK +HA ++RK L+ D+ +  AL DMYAKC  ++ +  VF   S
Sbjct: 389 LASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTS 448

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  V +N L+ G        E++ LF  M +  ++ +  +F   I A A LA +KQ   
Sbjct: 449 MKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMN 508

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP--VKDSASWNTLILGYGML 237
           +H   +R    + + V   ++D Y++ G +D A+KIFD +P   KD   W+ LI GYGM 
Sbjct: 509 LHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMH 568

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G  +TA+ LF  M   G+  + +++ ++L ACSH GLV+ G   F  M  +    P   H
Sbjct: 569 GHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNH 628

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y C+VDLLGRAG +++A  LIK++P + + +IWGALLGAC I+ NVELG  AAE LF L+
Sbjct: 629 YTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQNVELGEVAAERLFELE 688

Query: 357 PQHCGYYILLSNMYAEAGKWDEA 379
           P+  G YILL+N+YA  G+W +A
Sbjct: 689 PESTGNYILLANIYAAVGRWKDA 711



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 149/271 (54%), Gaps = 2/271 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSVTLTNVLPACA 69
           A  LF ++++ ++  WNA++  +        AL++   M    + +P+  T   V+ AC+
Sbjct: 136 ARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACS 195

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF-RDEVSYNI 128
               L  G  IH R +  G + ++F+ N+L  MY  CG + LA+ VFN+   R  VS+N 
Sbjct: 196 VMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNT 255

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +I G+ Q     E+L++F+ M    ++ D  + + A+ +C +L  ++ G ++H +  + H
Sbjct: 256 MISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNH 315

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L   + V N+++D Y+R G +D A+ +F     KD  +W ++I GY M G   +A+ L  
Sbjct: 316 LQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCP 375

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
           AM+ DGV  + V+  ++L+AC+    +++GK
Sbjct: 376 AMQLDGVVPNAVTLASLLSACASLCCLKQGK 406


>gi|354805138|gb|AER41559.1| pentatricopeptide [Oryza australiensis]
          Length = 510

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 152/425 (35%), Positives = 234/425 (55%), Gaps = 12/425 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVT 60
           YAKS     A  +F     ++ V WN MV+ ++   L  +   +   M   + FP +  T
Sbjct: 52  YAKSGLVHHARRVFDETPLRDQVLWNVMVSCYSSQGLVRECWDVFGSMR-RSGFPGDGFT 110

Query: 61  LTNVLPACARGH--------FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
            + +L   A            L  G   H  +IR GL  D+ +  AL DMYAKCG +  A
Sbjct: 111 FSALLSVRASSSSCYDHANLLLLLGSSAHGIVIRLGLQLDVVVATALLDMYAKCGQVAEA 170

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
            +VF+ +  R+ +S+N +IV Y +     E+L +F  M   G   D ++    +S+CA++
Sbjct: 171 SSVFDAMVLRNTISWNAIIVCYGKHGRGKEALEVFVSMMRDGCCPDELTLASLLSSCADM 230

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
           A   +  ++H  T+++ L   L V+N+++  Y ++G +  A + F  +   D  +W+++I
Sbjct: 231 AVANEATQLHSYTVKRGLQDFLQVSNALIMAYGKNGFVQEATRTFGMIHNPDLVTWSSMI 290

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SV 290
             +  LG   +AINLF+ M + G+  D  +++ +L+AC H GLVE G KYF  M+ D  +
Sbjct: 291 SCFAYLGLAKSAINLFDRMLQQGIQADGTAFLGVLSACCHAGLVEDGFKYFLLMKRDYKI 350

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
            PT  H AC+VDLLGRAG + DA + + N+  + + ++ GA L ACR+ GN+E   WAA 
Sbjct: 351 DPTPQHLACLVDLLGRAGRIRDAYEFLVNMSCDANVDVIGAFLSACRMRGNIESAKWAAS 410

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
            LF LKP     Y+L+SNMYA AG W + +KVR +M+S    K PGCSW++    VQ FV
Sbjct: 411 RLFSLKPDDPINYLLISNMYAAAGAWSDLAKVRSVMRSMCGNKVPGCSWIEIGGIVQTFV 470

Query: 411 VNDRM 415
            ND M
Sbjct: 471 SNDMM 475



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 108/214 (50%), Gaps = 8/214 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  + AEAS +F  +  +N +SWNA++  + ++    +AL++   M      P+ +T
Sbjct: 160 MYAKCGQVAEASSVFDAMVLRNTISWNAIIVCYGKHGRGKEALEVFVSMMRDGCCPDELT 219

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L ++L +CA         ++H+  +++GL   L ++NAL   Y K G +  A   F  I 
Sbjct: 220 LASLLSSCADMAVANEATQLHSYTVKRGLQDFLQVSNALIMAYGKNGFVQEATRTFGMIH 279

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V+++ +I  ++       +++LF  M   G++ D  +F+G +SAC +   ++ G +
Sbjct: 280 NPDLVTWSSMISCFAYLGLAKSAINLFDRMLQQGIQADGTAFLGVLSACCHAGLVEDGFK 339

Query: 180 IHGVTIRKH----LHTHLFVANSILDFYTRSGRI 209
              +  R +       HL     ++D   R+GRI
Sbjct: 340 YFLLMKRDYKIDPTPQHL---ACLVDLLGRAGRI 370



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 45/88 (51%)

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   ++    +   VA ++ D Y +SG +  A ++FD  P++D   WN ++  Y   G 
Sbjct: 29  IHPFAVKSGSRSDARVATALADAYAKSGLVHHARRVFDETPLRDQVLWNVMVSCYSSQGL 88

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILT 267
           V    ++F +MR  G   D  ++ A+L+
Sbjct: 89  VRECWDVFGSMRRSGFPGDGFTFSALLS 116


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 139/417 (33%), Positives = 236/417 (56%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    A A  +F  +++ +I+SW AM+A +       + ++L  +M     FPN +T
Sbjct: 271 MYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEIT 330

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + +++  C     L  GK +HA  +R G    L L  A  DMY KCG +  A++VF+ SF
Sbjct: 331 MLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFD-SF 389

Query: 121 R--DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           +  D + ++ +I  Y+Q +   E+  +F  M   G++ +  + +  +  CA   +++ GK
Sbjct: 390 KSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGK 449

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH    ++ +   + +  S +D Y   G ID A+++F     +D + WN +I G+ M G
Sbjct: 450 WIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHG 509

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
             + A+ LFE M   GV  + +++I  L ACSH GL+++GK+ F +M  +    P   HY
Sbjct: 510 HGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHY 569

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            CMVDLLGRAGL+++A +LIK++P+ P+  ++G+ L AC+++ N++LG WAA+    L+P
Sbjct: 570 GCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEP 629

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
              GY +L+SN+YA A +W + + +R  MK     K PG S ++    + +F++ DR
Sbjct: 630 HKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDR 686



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 169/346 (48%), Gaps = 4/346 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++    A A  LF  I  K++VSW+ M+ ++ ++ L  +AL L+R+M +    P+ + 
Sbjct: 168 MYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIG 227

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
           + ++    A    L+ GK +HA ++R G      + L  AL DMY KC  L  A+ VF+ 
Sbjct: 228 MISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDG 287

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +S    +S+  +I  Y   ++ +E + LF +M   GM  + ++ +  +  C    A++ G
Sbjct: 288 LSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELG 347

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K +H  T+R      L +A + +D Y + G +  A  +FD    KD   W+ +I  Y   
Sbjct: 348 KLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQN 407

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
             +D A ++F  M   G+  +  + +++L  C+  G +E GK     +    +K   +  
Sbjct: 408 NCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILK 467

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
              VD+    G ++ A +L      + D ++W A++    ++G+ E
Sbjct: 468 TSFVDMYANCGDIDTAHRLFAE-ATDRDISMWNAMISGFAMHGHGE 512



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 178/394 (45%), Gaps = 42/394 (10%)

Query: 29  MVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKG 88
           ++ ++ +N     A ++   M   +   ++  + +VL AC        G+E+H  +++ G
Sbjct: 95  LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNG 154

Query: 89  LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
            + D+F+ NAL  MY++ G L LA+ +F+ I  +D VS++ +I  Y ++    E+L L  
Sbjct: 155 FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLR 214

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR--KHLHTHLFVANSILDFYTR 205
           +M ++ +K   +  +      A LA +K GK +H   +R  K   + + +  +++D Y +
Sbjct: 215 DMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVK 274

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
              +  A ++FD L      SW  +I  Y     ++  + LF  M  +G+  + ++ +++
Sbjct: 275 CENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSL 334

Query: 266 LTACSHGGLVEKGK------------------KYFDEMQA------------DSVKPTE- 294
           +  C   G +E GK                    F +M              DS K  + 
Sbjct: 335 VKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDL 394

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEH 351
           M ++ M+    +   +++A  +  ++    + P+     +LL  C   G++E+G W   H
Sbjct: 395 MMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWI--H 452

Query: 352 LFMLKPQHCGYYILLS---NMYAEAGKWDEASKV 382
            ++ K    G  IL +   +MYA  G  D A ++
Sbjct: 453 SYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRL 486



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 70/140 (50%)

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           ++ LI  Y + +  +++  +++ MR    + D       + AC  + +   G+E+HG  +
Sbjct: 92  HSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVV 151

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
           +   H  +FV N+++  Y+  G + LA  +FD +  KD  SW+T+I  Y   G +D A++
Sbjct: 152 KNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALD 211

Query: 246 LFEAMREDGVGYDPVSYIAI 265
           L   M    V    +  I+I
Sbjct: 212 LLRDMHVMRVKPSEIGMISI 231


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 239/415 (57%), Gaps = 3/415 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP-IHNEFPNSVT 60
           YA+     EA  LF  + E++  SW AMV  + +     +AL L   M  + N  PN  T
Sbjct: 163 YAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFT 222

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +++ + A A    +R GKEIH  I+R GL+ D  L ++L DMY KCGC++ A+N+F+ I 
Sbjct: 223 VSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKII 282

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+  +I  Y ++S   E  SLFSE+     + +  +F G ++ACA+L   + G++
Sbjct: 283 DKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQ 342

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG   R     + F ++S++D YT+ G I+ A  + D  P  D  S  +LI GY   G+
Sbjct: 343 VHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGK 402

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
            D A+  F+ + + G   D V+++ +L+AC+H GLVEKG ++F  + +   +  T  HY 
Sbjct: 403 PDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYT 462

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLL R+G  E    ++  +P++P   +W ++LG C  YGN++L   AA+ LF ++P+
Sbjct: 463 CLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPE 522

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +   Y+ ++N+YA AGKW+E  K+R+ M+     K PG SW + + +   F+  D
Sbjct: 523 NPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAAD 577



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 138/293 (47%), Gaps = 12/293 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA  +F  I +K++VSW +M+  + ++    +   L  E+    E PN  T
Sbjct: 264 MYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYT 323

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            + VL ACA       G+++H  + R G +   F +++L DMY KCG +  A++V +   
Sbjct: 324 FSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCP 383

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           + D VS   LI GY+Q     E+L  F  +   G K D V+F+  +SAC +   +++G E
Sbjct: 384 KPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLE 443

Query: 180 IHGVTIRKHLHTHLFVANSIL-DFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGML 237
                  KH  TH     + L D   RSGR +    +   +P+K S   W +++ G    
Sbjct: 444 FFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTY 503

Query: 238 GEVD----TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
           G +D     A  LF+   E     +PV+Y+ +    +  G  E+  K    MQ
Sbjct: 504 GNIDLAEEAAQELFKIEPE-----NPVTYVTMANIYAAAGKWEEEGKMRKRMQ 551



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 17/137 (12%)

Query: 139 CSESLSLFSEMRLLGM--KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
           C + L L   ++LLG   K    ++   I  C+   A+++GK++H     +H+ T  FV 
Sbjct: 67  CGQKL-LREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVH-----EHIRTSGFVP 120

Query: 197 -----NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
                N IL  Y + G +  A K+FD +P +D  SWN ++ GY  +G ++ A NLF+ M 
Sbjct: 121 GIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMP 180

Query: 252 EDGVGYDPVSYIAILTA 268
           E     D  S+ A++T 
Sbjct: 181 E----RDSYSWTAMVTG 193


>gi|242062998|ref|XP_002452788.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
 gi|241932619|gb|EES05764.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
          Length = 662

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 148/409 (36%), Positives = 230/409 (56%), Gaps = 3/409 (0%)

Query: 1   MYAKSSRPAEASYLF-HNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNS 58
           MY K     +A  +F  +  +K++VSW AM+  +  N    KA  L  EM + +E  PN+
Sbjct: 253 MYGKCRSLEDAKRVFDEDSYDKDVVSWTAMIGAYVLNDHASKAFALGSEMLVTSEAQPNA 312

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
           VT+ ++L AC      +  K  HA  IR GL  D  +  AL D YAKCG + +   V   
Sbjct: 313 VTMVHLLSACTSLLSGKHAKCTHALCIRLGLGSDTVVETALVDCYAKCGYMGMIDMVVEK 372

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R   ++N  I GY+      ++L+LF +M    ++ D  +    I A A  A + Q K
Sbjct: 373 GSRRTETWNAAISGYTHREQGKKALALFKQMLAESVRPDSATMASVIPAYAESADLVQAK 432

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH   + +       +A  +++ Y ++G + +A ++F CLP KD  +W T+I GYGM G
Sbjct: 433 NIHCCLLIRGCLGSTDIATGLINVYAKAGDLGVAWELFQCLPEKDVVAWTTVIAGYGMHG 492

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHY 297
              TAI L+  M E GV  + V+  +++ +CSH G+V++G + F++M+    + P   HY
Sbjct: 493 HAQTAILLYSRMIEMGVTPNTVTMASLMYSCSHAGMVDEGLRLFNDMRGVHGLMPNAEHY 552

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
            C+VD+LGRAG +E+A +LI+++P EP  ++W ALLGAC ++ NVE G  AA+HLF L+P
Sbjct: 553 LCLVDMLGRAGRIEEAYRLIQDMPFEPSTSVWSALLGACVLHENVEFGEVAAKHLFELEP 612

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEV 406
            + G Y+LL  +YA A +W +   +  +M+ R   K+PG S V  + EV
Sbjct: 613 DNVGNYVLLGKVYAAADRWSDVQDLWRVMEGRGLHKDPGSSVVDAKSEV 661



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 163/355 (45%), Gaps = 23/355 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +      A  +F  +  +  VSWN ++    ++    +AL++   M       +  T
Sbjct: 152 MYMRCRDVVSAEAVFGALRSRTTVSWNTVITGCVKDGRAERALEVFETMVGRGVCIDRAT 211

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + +VLPACA+   L  G+ +H   + +GL     + NAL DMY KC  L  A+ VF+   
Sbjct: 212 VVSVLPACAQARDLHMGRAVHRLAVVRGLGNYAAVKNALIDMYGKCRSLEDAKRVFDEDS 271

Query: 121 --RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQG 177
             +D VS+  +I  Y      S++ +L SEM +    + + V+ +  +SAC +L + K  
Sbjct: 272 YDKDVVSWTAMIGAYVLNDHASKAFALGSEMLVTSEAQPNAVTMVHLLSACTSLLSGKHA 331

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K  H + IR  L +   V  +++D Y + G + + + + +    + + +WN  I GY   
Sbjct: 332 KCTHALCIRLGLGSDTVVETALVDCYAKCGYMGMIDMVVE-KGSRRTETWNAAISGYTHR 390

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
            +   A+ LF+ M  + V  D  +  +++ A +            D +QA ++    +  
Sbjct: 391 EQGKKALALFKQMLAESVRPDSATMASVIPAYAESA---------DLVQAKNIHCCLLIR 441

Query: 298 AC---------MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
            C         ++++  +AG +  A +L + LP E D   W  ++    ++G+ +
Sbjct: 442 GCLGSTDIATGLINVYAKAGDLGVAWELFQCLP-EKDVVAWTTVIAGYGMHGHAQ 495



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 121/273 (44%), Gaps = 8/273 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSW-NAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           Y    RP +A  L   + +   VS  N ++ ++       +AL L  +M   +      T
Sbjct: 55  YCACGRPFDAHNLLVQMPQPPPVSVSNTLLRSYTGLGFNRQALALYSQMRAFDHL----T 110

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            T    ACA     R G+ +H R +  G   D ++ NAL  MY +C  +  A+ VF  + 
Sbjct: 111 FTFAAKACADLRRRRHGRAVHGRALTAGFGGDGYVQNALVSMYMRCRDVVSAEAVFGALR 170

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS+N +I G  +      +L +F  M   G+  D  + +  + ACA    +  G+ 
Sbjct: 171 SRTTVSWNTVITGCVKDGRAERALEVFETMVGRGVCIDRATVVSVLPACAQARDLHMGRA 230

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KDSASWNTLILGYGMLG 238
           +H + + + L  +  V N+++D Y +   ++ A ++FD     KD  SW  +I  Y +  
Sbjct: 231 VHRLAVVRGLGNYAAVKNALIDMYGKCRSLEDAKRVFDEDSYDKDVVSWTAMIGAYVLND 290

Query: 239 EVDTAINL-FEAMREDGVGYDPVSYIAILTACS 270
               A  L  E +       + V+ + +L+AC+
Sbjct: 291 HASKAFALGSEMLVTSEAQPNAVTMVHLLSACT 323



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 116/259 (44%), Gaps = 6/259 (2%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSY-NILIVGYSQT 136
           ++HA +++ G        + L   Y  CG    A N+   +     VS  N L+  Y+  
Sbjct: 31  QLHALLLKSGHLLHCDSIHLLLGSYCACGRPFDAHNLLVQMPQPPPVSVSNTLLRSYTGL 90

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               ++L+L+S+MR      D ++F  A  ACA+L   + G+ +HG  +        +V 
Sbjct: 91  GFNRQALALYSQMRAF----DHLTFTFAAKACADLRRRRHGRAVHGRALTAGFGGDGYVQ 146

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N+++  Y R   +  A  +F  L  + + SWNT+I G    G  + A+ +FE M   GV 
Sbjct: 147 NALVSMYMRCRDVVSAEAVFGALRSRTTVSWNTVITGCVKDGRAERALEVFETMVGRGVC 206

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            D  + +++L AC+    +  G+          +         ++D+ G+   +EDA ++
Sbjct: 207 IDRATVVSVLPACAQARDLHMGRAVHRLAVVRGLGNYAAVKNALIDMYGKCRSLEDAKRV 266

Query: 317 IKNLPVEPDANIWGALLGA 335
                 + D   W A++GA
Sbjct: 267 FDEDSYDKDVVSWTAMIGA 285


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 142/415 (34%), Positives = 243/415 (58%), Gaps = 1/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK      A  +F  +  + IVSW ++++ +AQN   ++AL++  +M  +   P+ + 
Sbjct: 198 LYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIA 257

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L ++L A      L  G+ IH  +I+ GL  +  L  +LT  YAKCG + +A++ F+ + 
Sbjct: 258 LVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMK 317

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             + + +N +I GY++     E+++LF  M    +K D V+   A+ A A + +++  + 
Sbjct: 318 TTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQW 377

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +     + +  + +FV  S++D Y + G ++ A ++FD    KD   W+ +I+GYG+ G+
Sbjct: 378 MDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQ 437

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              AINL+  M++ GV  + V++I +LTAC+H GLV++G + F  M+   + P   HY+C
Sbjct: 438 GWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKDFEIVPRNEHYSC 497

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLLGRAG + +A   I  +P+EP  ++WGALL AC+IY  V LG +AA  LF L P +
Sbjct: 498 VVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYN 557

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            G+Y+ LSN+YA +  WD  + VR LM+ +   K+ G S ++   ++Q F V D+
Sbjct: 558 TGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDK 612



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 159/352 (45%), Gaps = 52/352 (14%)

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGY 133
           R   +IH R++  GL  + FL   L +  +  G +  A+ +F+   + D   +N +I  Y
Sbjct: 70  RHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSY 129

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           S+ +   +++ ++  MR  G+  D  +F   + AC  L        IHG  I+    + +
Sbjct: 130 SRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDV 189

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
           FV N ++  Y + G I +A  +FD L  +   SW ++I GY   G+   A+ +F  MR +
Sbjct: 190 FVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNN 249

Query: 254 GVGYDPVSYIAILTACS-----------HG------------------------GLVEKG 278
           GV  D ++ ++IL A +           HG                        GLV   
Sbjct: 250 GVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVA 309

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDA-NIWGALLG 334
           K +FD+M+  +V    + +  M+    + G  E+AV L   +    ++PD+  +  A+L 
Sbjct: 310 KSFFDQMKTTNV----IMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLA 365

Query: 335 ACRIYGNVELGAWAAEHLFMLKPQHCGYYIL----LSNMYAEAGKWDEASKV 382
           + ++ G++EL  W  ++   +   + G  I     L +MYA+ G  + A +V
Sbjct: 366 SAQV-GSLELAQWMDDY---VSKSNYGSDIFVNTSLIDMYAKCGSVEFARRV 413


>gi|357119036|ref|XP_003561252.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71490-like [Brachypodium distachyon]
          Length = 692

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 150/457 (32%), Positives = 245/457 (53%), Gaps = 37/457 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFA-------------------------- 34
           MYAKS     A  +F  +A+K++VSWN+M++ +                           
Sbjct: 206 MYAKSGDLVAARKVFEGMAQKDVVSWNSMISAYVAVGQWVQAVELFERMRAEEAEVNSVT 265

Query: 35  ---------QNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
                      R    A+ L+REM       + VTL     AC+R  +LR GKEIH   +
Sbjct: 266 WNTIAGVYINTRDHRAAVGLIREMVSDGAAVDFVTLVIGSNACSRVGWLRLGKEIHGLAV 325

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLS 144
           R   +    + NAL  MYA+C  ++ A  +F  ++    V++N +I  ++ + +  E+  
Sbjct: 326 RMNCDGVESVANALITMYARCKHMDSACLLFKMLACPGVVTWNTMIASFALSDEAEEASR 385

Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
           L  EM   G++ + V+ +  ++ CA +A ++ G+E+H   ++     +  + NS++D Y+
Sbjct: 386 LVHEMVGAGVQPNYVTVVTLLALCARVANLQHGQELHSHIVKNGFKGYRLLWNSLIDMYS 445

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           +SG + +A  +FD +  +D  S+  +I GYGM G+   A+ LF+ M + G+  D +S + 
Sbjct: 446 KSGXLSVAQNVFDTMDDRDMISYTXMIAGYGMQGKGTIALRLFDQMIDSGIKPDHISMVT 505

Query: 265 ILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
           +L+ACSH GLV +G+K FD+M +   +KP   HY+CMVDL  R+GL+E A  ++      
Sbjct: 506 VLSACSHSGLVTEGEKLFDKMTSSYGIKPQMEHYSCMVDLYARSGLLEKAEGMLNESSSP 565

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVR 383
           P + +W AL+GAC   GN+ +G  AA  L  +K ++ G+Y+L++NMYA AG WDE + VR
Sbjct: 566 PTSMMWAALVGACHDRGNIIIGERAARRLLEMKTENAGHYVLIANMYAAAGCWDELATVR 625

Query: 384 ELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFTP 420
           +LM+     K PG +WV  R+    F+V DR     P
Sbjct: 626 KLMRDLGVTKAPGLAWVDLRNGFAPFLVGDRSNPLAP 662



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 148/331 (44%), Gaps = 36/331 (10%)

Query: 26  WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
           +N ++++  ++     AL   ++M      P++ T  +VL ACA    L  G+ +H   +
Sbjct: 130 YNILISSCLRHGFPRHALAAYQQMARSAVLPDAFTYPSVLRACAEAGDLALGRAVHLHGL 189

Query: 86  RKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLS 144
             G+   LF  NAL  MYAK G L  A+ VF  ++ +D VS+N +I  Y       +++ 
Sbjct: 190 ATGVGGHLFFQNALVSMYAKSGDLVAARKVFEGMAQKDVVSWNSMISAYVAVGQWVQAVE 249

Query: 145 LFSEMR--------------------------LLGMKHDVVSFMGAI---------SACA 169
           LF  MR                           +G+  ++VS   A+         +AC+
Sbjct: 250 LFERMRAEEAEVNSVTWNTIAGVYINTRDHRAAVGLIREMVSDGAAVDFVTLVIGSNACS 309

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
            +  ++ GKEIHG+ +R +      VAN+++  Y R   +D A  +F  L      +WNT
Sbjct: 310 RVGWLRLGKEIHGLAVRMNCDGVESVANALITMYARCKHMDSACLLFKMLACPGVVTWNT 369

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS 289
           +I  + +  E + A  L   M   GV  + V+ + +L  C+    ++ G++    +  + 
Sbjct: 370 MIASFALSDEAEEASRLVHEMVGAGVQPNYVTVVTLLALCARVANLQHGQELHSHIVKNG 429

Query: 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
            K   + +  ++D+  ++G +  A  +   +
Sbjct: 430 FKGYRLLWNSLIDMYSKSGXLSVAQNVFDTM 460



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 132/337 (39%), Gaps = 74/337 (21%)

Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
           YNILI    +      +L+ + +M    +  D  ++   + ACA    +  G+ +H   +
Sbjct: 130 YNILISSCLRHGFPRHALAAYQQMARSAVLPDAFTYPSVLRACAEAGDLALGRAVHLHGL 189

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
              +  HLF  N+++  Y +SG +  A K+F+ +  KD  SWN++I  Y  +G+   A+ 
Sbjct: 190 ATGVGGHLFFQNALVSMYAKSGDLVAARKVFEGMAQKDVVSWNSMISAYVAVGQWVQAVE 249

Query: 246 LFEAMR-----------------------------------EDGVGYDPVSYIAILTACS 270
           LFE MR                                    DG   D V+ +    ACS
Sbjct: 250 LFERMRAEEAEVNSVTWNTIAGVYINTRDHRAAVGLIREMVSDGAAVDFVTLVIGSNACS 309

Query: 271 HGGLVEKGKKYFD---EMQADSVKPT------------EMHYACMV-DLLGRAGLM---- 310
             G +  GK+       M  D V+               M  AC++  +L   G++    
Sbjct: 310 RVGWLRLGKEIHGLAVRMNCDGVESVANALITMYARCKHMDSACLLFKMLACPGVVTWNT 369

Query: 311 -----------EDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
                      E+A +L+  +    V+P+      LL  C    N++ G     H+  +K
Sbjct: 370 MIASFALSDEAEEASRLVHEMVGAGVQPNYVTVVTLLALCARVANLQHGQELHSHI--VK 427

Query: 357 PQHCGYYIL---LSNMYAEAGKWDEASKVRELMKSRE 390
               GY +L   L +MY+++G    A  V + M  R+
Sbjct: 428 NGFKGYRLLWNSLIDMYSKSGXLSVAQNVFDTMDDRD 464


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 146/424 (34%), Positives = 243/424 (57%), Gaps = 6/424 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+KS    +A  LF  +  +   SWN+M+A +A      +AL+L R M      PN++T+
Sbjct: 161 YSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITI 220

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             +   CA+   L  GK   + I  + L  ++ +  AL +MY KC  ++ A+  F+ +  
Sbjct: 221 ATMFSICAKTGDLETGKWARSLIAEQDLQ-NMIVHTALMEMYVKCQAIDEARREFDRMQQ 279

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD V+++ +I GY+Q     ESL LF  M+    K + V+ +G +SACA L + + G +I
Sbjct: 280 RDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQI 339

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
                 ++L    ++ ++++D YT+ G +  A  +F+ +  K   +WN+++ G  + G  
Sbjct: 340 GSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFA 399

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYAC 299
             AI L++ M E+ V  + ++++A+LTAC+H GLV++G  +F EM+    V P   H AC
Sbjct: 400 QDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCAC 459

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLL ++G + +A K I ++ VEP+A IW  LL ACR + +VEL   AA  L +L+P +
Sbjct: 460 IVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLEPDN 519

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
              Y+LLSN+YA+AG W +  ++R+LM+S+  +K    SW++   EV  F+V D   T+ 
Sbjct: 520 SSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELDGEVHKFLVQD---TYH 576

Query: 420 PGPA 423
           P  A
Sbjct: 577 PKSA 580



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 171/397 (43%), Gaps = 77/397 (19%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P  V L  V+ +CA     R GK++H   I +GL  D+F+  AL D YAK G ++ A  V
Sbjct: 85  PGCVPL--VVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKV 142

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDC-------------------------------SESL 143
           F+ +  +D +  N LI GYS++ D                                 E+L
Sbjct: 143 FDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEAL 202

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203
            LF  M   G + + ++     S CA    ++ GK    +   + L  ++ V  ++++ Y
Sbjct: 203 RLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQ-NMIVHTALMEMY 261

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
            +   ID A + FD +  +D  +W+T+I GY   G    ++ LFE M+      + V+ +
Sbjct: 262 VKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLV 321

Query: 264 AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL------LGRA---------- 307
            +L+AC+  G  E G +    +++ ++  T    + ++D+      +GRA          
Sbjct: 322 GVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHK 381

Query: 308 ---------------GLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGAW-- 347
                          G  +DA+ L K +    V+P+   + ALL AC   G V+ G    
Sbjct: 382 VVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFF 441

Query: 348 -AAEHLFMLKPQ--HCGYYILLSNMYAEAGKWDEASK 381
              + +  + PQ  HC   +   ++  ++G+  EA K
Sbjct: 442 KEMKTIHHVSPQVEHCACIV---DLLCKSGRLREAYK 475



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 125/237 (52%), Gaps = 9/237 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA   F  + ++++V+W+ M+A +AQN    ++L+L   M   +  PN VT
Sbjct: 260 MYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVT 319

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL ACA+      G +I + +  + L    +L +AL DMY KCG +  A++VFN + 
Sbjct: 320 LVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRME 379

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
            +  +++N ++ G +      ++++L+ EM    ++ + ++F+  ++AC +   + QG  
Sbjct: 380 HKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMS 439

Query: 178 --KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
             KE+  +    H+   +     I+D   +SGR+  A K    + V+ +A  W+TL+
Sbjct: 440 FFKEMKTI---HHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLL 493



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 135/303 (44%), Gaps = 6/303 (1%)

Query: 93  LFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSY-NILIVGYSQTSDCSESLSLFSEMRL 151
           L  T  L D+ +       A+++F+   R   +    LI   S+     E L  FS +  
Sbjct: 19  LLKTRPLHDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHR 78

Query: 152 LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211
            G           + +CA LAA +QGK++H   I + L   +FV  +++DFY ++G +D 
Sbjct: 79  RGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDC 138

Query: 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271
           A K+FD +PVKD    N LI GY   G+V  A  LF+ M    V     S+ +++   +H
Sbjct: 139 AVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGM----VRRTSASWNSMIACYAH 194

Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
           GG  ++  + F  M ++  +P  +  A M  +  + G +E   K  ++L  E D      
Sbjct: 195 GGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETG-KWARSLIAEQDLQNMIV 253

Query: 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
                 +Y   +    A      ++ +    +  +   YA+ G+  E+ ++ E MK+   
Sbjct: 254 HTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSC 313

Query: 392 KKN 394
           K N
Sbjct: 314 KPN 316


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 158/440 (35%), Positives = 245/440 (55%), Gaps = 32/440 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP----------- 50
           YAK+ +  EA  LF  +  K++VSWN+M+  + +N      LQ   EM            
Sbjct: 37  YAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMV 96

Query: 51  --------------IHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFL 95
                            + PN  T++ V   C    F R GK   AR +   +   ++  
Sbjct: 97  DGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCG---FARFGKIAEARRLFDQMPIRNVVA 153

Query: 96  TNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154
            NA+   Y +   ++ A ++F  +  ++ +S+  +I GY +     E+  L ++M     
Sbjct: 154 WNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN- 212

Query: 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANK 214
           K D  +F   +S+CA+LAA++ GK++H + ++    T LFV+N+++  Y + G I  A  
Sbjct: 213 KPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAEL 272

Query: 215 IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL 274
           +F  +   D  SWN+LI  Y + G    A+ LF  M  +GV  D V+++ IL+ACSH GL
Sbjct: 273 LFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGL 332

Query: 275 VEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           +++G K F  M QA +++P   HYACMVDLLGRAG +E+A +L++ + +  +A IWGALL
Sbjct: 333 IDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALL 392

Query: 334 GACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKK 393
           GACRI+GN+EL  +AAE L   +P     Y+LLSNM AEAG+WDE ++VR LMK + A+K
Sbjct: 393 GACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEK 452

Query: 394 NPGCSWVQTRDEVQDFVVND 413
            PG SW++ ++ V  F+  D
Sbjct: 453 QPGWSWIELQNRVHAFLSED 472



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 14/194 (7%)

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N+++  Y ++ + D A ++FD +P KD  SWN+++ GY   GE+   +  FE M E    
Sbjct: 31  NAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAER--- 87

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
            D VS+  ++      G +    ++F+++      P  + +  M+    R G + +A +L
Sbjct: 88  -DVVSWNLMVDGFVEVGDLNSSWEFFEKIP----NPNTVSWVTMLCGFARFGKIAEARRL 142

Query: 317 IKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY-YILLSNMYAEAGK 375
              +P+  +   W A++ A     +V+     A  LFM  P+     +  + N Y   GK
Sbjct: 143 FDQMPIR-NVVAWNAMIAAYVQNCHVD----EAISLFMEMPEKNSISWTTVINGYVRMGK 197

Query: 376 WDEASKVRELMKSR 389
            DEA ++   M  R
Sbjct: 198 LDEARQLLNQMPYR 211



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK    + A  LF +I   ++VSWN+++A +A N    +AL+L  +M +    P+ VT
Sbjct: 260 MYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVT 319

Query: 61  LTNVLPACA 69
              +L AC+
Sbjct: 320 FVGILSACS 328


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 142/412 (34%), Positives = 235/412 (57%), Gaps = 2/412 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K  +P     LF  ++  ++VSW  ++  + Q   E +AL   + M   +  PN  T
Sbjct: 296 MYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYT 355

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +V+ ACA     + G++IH   +R GL   L ++N++  +Y+KCG L  A  VF+ ++
Sbjct: 356 FASVISACANLAITKWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMT 415

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D +S++ +I  Y Q S   E+ +  S M   G K +  +    +S C ++A ++ GK+
Sbjct: 416 RKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQ 475

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   +   L     V ++++  Y+RSG +  A+KIFD +   D  SW  +I GY   G 
Sbjct: 476 VHAYALCIGLDHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGY 535

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              AI+LFE +   G+  D V++I ILTAC+H GLV+ G  Y+  M  +  + P++ HY 
Sbjct: 536 SQEAISLFENISSVGLMPDYVTFIGILTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYG 595

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C++DLL RAG + +A  +++N+P   D  +W  LL ACR +G+++   WAAE +  L P 
Sbjct: 596 CIIDLLCRAGRLSEAEHMVRNMPFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPN 655

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
             G +I L+N+Y+ +G+ +EA+ VR+LMKS+   K PG SW+ + D++  FV
Sbjct: 656 SAGAHITLANIYSASGRREEAAHVRKLMKSKGVIKEPGWSWINSNDQLNTFV 707



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 161/341 (47%), Gaps = 2/341 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  +  +   +F N+  +N+VSW A++         L  L    EM       +S T
Sbjct: 195 MYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHT 254

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
               L A A    L  GK IHA+ I++G N   ++ N L  MY+KC   +    +F  +S
Sbjct: 255 FAVALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMS 314

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VS+  LI+ Y Q  D   +L  F  MR   +  +  +F   ISACANLA  K G++
Sbjct: 315 TPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQ 374

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  +R  L   L V+NSI+  Y++ G +  A+ +FD +  KD  SW+T+I  Y     
Sbjct: 375 IHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSH 434

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A N    M  +G   +  +  ++L+ C    L+E GK+         +    M ++ 
Sbjct: 435 AKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHETMVHSA 494

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           ++ +  R+G +++A K+  ++    D   W A++     +G
Sbjct: 495 LISMYSRSGNLQEASKIFDSIK-NNDIVSWTAMINGYAEHG 534



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 145/279 (51%), Gaps = 2/279 (0%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           K  +  EA  +F+ ++ ++ +SW  ++A +       +AL L   M + +       + +
Sbjct: 96  KLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVS 155

Query: 64  V-LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFR 121
           V L ACA G  +  G+ +H   ++ GL   +F+++AL DMY K G      +VF N++ R
Sbjct: 156 VALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTR 215

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
           + VS+  +IVG        + LS FSEM    + +D  +F  A+ A A    +  GK IH
Sbjct: 216 NVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIH 275

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
             TI++  +   +V N++   Y++  + D   ++F  +   D  SW  LI+ Y  +G+ +
Sbjct: 276 AQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEE 335

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            A++ F+ MR+  V  +  ++ ++++AC++  + + G++
Sbjct: 336 RALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQ 374


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 142/405 (35%), Positives = 235/405 (58%), Gaps = 2/405 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  I + +IV +N+M   ++++   LKA+ L  +   +N  P+  T  ++L AC  
Sbjct: 80  AHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVV 139

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRD-EVSYNIL 129
               + GK++H   I+ GLN + ++   L +MYA C  ++ AQ VF+       VSYN +
Sbjct: 140 AKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAI 199

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY+++S  +E+LSLF +++   +K + V+ +  +S+CA L A+  GK IH    +  L
Sbjct: 200 ITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGL 259

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
             ++ V  +++D Y + G +D A  +F+ + V+D+ +W+ +I+ Y M G+    +++FE 
Sbjct: 260 DKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEE 319

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAG 308
           M    V  D ++++ +L ACSH GLV++G +YF  M +   + P   HY CMVDLLGRAG
Sbjct: 320 MARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAG 379

Query: 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368
           L+ +A K I  LP++P   +W  LL +C  +GN+EL       +  L   H G Y++LSN
Sbjct: 380 LLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSN 439

Query: 369 MYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + A AGKW++   +R+LM  + A K PGCS ++  + V +F   D
Sbjct: 440 LCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGD 484



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 144/285 (50%), Gaps = 22/285 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA  +    A  +F  I E  +VS+NA++  +A++    +AL L R++      PN VT
Sbjct: 171 MYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVT 230

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + +VL +CA    L  GK IH  + + GL+  + +  AL DMYAKCG L+ A +VF ++S
Sbjct: 231 VLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMS 290

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
            RD  +++ +IV Y+      + +S+F EM    ++ D ++F+G + AC++   + +G  
Sbjct: 291 VRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFR 350

Query: 178 -----KEIHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTL 230
                 E++G+    KH          ++D   R+G +  A K  D LP+K +   W TL
Sbjct: 351 YFYSMSEVYGIIPGIKHY-------GCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTL 403

Query: 231 ILGYGMLGEVDTAINLFEAMRE--DGVGYDPVSYIAILTACSHGG 273
           +      G ++ A  +   + E  D  G D   Y+ +   C+  G
Sbjct: 404 LSSCSSHGNLELAKQVMNQILELDDSHGGD---YVILSNLCARAG 445



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 115/278 (41%), Gaps = 55/278 (19%)

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR---SGRIDLANKIF 216
           S +  +  C +L  +KQ   I   +I+ HL   L +   +++  T+   +  +D A+++F
Sbjct: 28  SLLSCLPKCTSLKELKQ---IQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQLF 84

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
           + +P  D   +N++  GY        AI+LF       +  D  ++ ++L AC      +
Sbjct: 85  EAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQ 144

Query: 277 KGK-----------------------------------KYFDEMQADSVKPTEMHYACMV 301
           +GK                                   + FDE+    ++P  + Y  ++
Sbjct: 145 QGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEI----LEPCVVSYNAII 200

Query: 302 DLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
               R+    +A+ L + L    ++P+     ++L +C + G ++LG W  E+   +K  
Sbjct: 201 TGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEY---VKKN 257

Query: 359 HCGYYI----LLSNMYAEAGKWDEASKVRELMKSREAK 392
               Y+     L +MYA+ G  D A  V E M  R+ +
Sbjct: 258 GLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQ 295


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 148/422 (35%), Positives = 240/422 (56%), Gaps = 9/422 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K     +A  +F  + E+++V WNAM+  + +     KA+ + + M       +  T 
Sbjct: 119 YLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTT 178

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T++L        +  G+ IH  + + G +  + ++NAL DMY KC     A  +F  I+ 
Sbjct: 179 TSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINE 238

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D  S+N +I  + Q  D   +L LF +M    +  DV++    + AC++LAA+  G+EI
Sbjct: 239 KDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREI 298

Query: 181 HGVTIRKHLHTH-----LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           HG  I   L  +     + + N+I+D Y + G +  A+ IFD +  KD ASWN +I+GY 
Sbjct: 299 HGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYA 358

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
           M G    A+++F  M E  +  D V+++ +L+ACSH G V +G+ +   M+ +  V PT 
Sbjct: 359 MHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTI 418

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HY C++D+LGRAG + +A  L + +P+E +  +W ALLGACR++GN ELG    E +  
Sbjct: 419 EHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWMALLGACRLHGNAELGNVVGEKITQ 478

Query: 355 LKPQHC--GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVN 412
           L+P+HC  G YIL+S++Y   G+++EA +VR  MK +  KK PGCSW++ +D +  F + 
Sbjct: 479 LEPKHCGSGSYILMSSLYGVVGRYEEALEVRRTMKEQNVKKTPGCSWIELKDGLYVFSMG 538

Query: 413 DR 414
           DR
Sbjct: 539 DR 540



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 18/248 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  I EK++ SWN++++   Q       L+L  +M      P+ +T
Sbjct: 219 MYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVIT 278

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF-----DLFLTNALTDMYAKCGCLNLAQNV 115
           +T VLPAC+    L  G+EIH  +I  GL       D+ L NA+ DMYAKCGC+  A  +
Sbjct: 279 ITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADII 338

Query: 116 FNI-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F++   +D  S+NI+I+GY+     +E+L +F  M    +K DVV+F+G +SAC++   +
Sbjct: 339 FDLMRNKDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFV 398

Query: 175 KQGKEIHGVTIRKHLHTHLFVA----NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
            QG+       R  L   +         I+D   R+G +  A  +   +P++D+     L
Sbjct: 399 HQGRSF---LTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDN-----L 450

Query: 231 ILGYGMLG 238
           IL   +LG
Sbjct: 451 ILWMALLG 458



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 166/347 (47%), Gaps = 11/347 (3%)

Query: 1   MYAKSSRPAEASYLFHN-IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MY++ ++  EA  +F +   E+N+ ++NA++A F  N L     Q  + M      P+  
Sbjct: 19  MYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGVMPDKF 78

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           T   V+ AC    F+   ++IH  + + GL  ++F+ +AL + Y K      A+ VF  +
Sbjct: 79  TFPCVVRACCE--FMEV-RKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKVFEEL 135

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             RD V +N +I GY++    ++++ +F  M   G+     +    +S   ++  I  G+
Sbjct: 136 PERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDINNGR 195

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IHG+  +    + + V+N+++D Y +    + A  IF+ +  KD  SWN++I  +    
Sbjct: 196 AIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQCD 255

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE---- 294
           + D  + LF  M    V  D ++  A+L ACSH   +  G++    M  + +   E    
Sbjct: 256 DHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDD 315

Query: 295 -MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
            +    ++D+  + G M++A  +I +L    D   W  ++    ++G
Sbjct: 316 VLLNNAIMDMYAKCGCMKNA-DIIFDLMRNKDVASWNIMIMGYAMHG 361



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 116/241 (48%), Gaps = 6/241 (2%)

Query: 97  NALTDMYAKCGCLNLAQNVFNISF--RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154
            +L +MY++C  +  A  VF   +  R+  +YN +I G+      ++    +  MR +G+
Sbjct: 14  TSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGV 73

Query: 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANK 214
             D  +F   + AC     +++   IHG   +  L  ++FV +++++ Y +    + A K
Sbjct: 74  MPDKFTFPCVVRACCEFMEVRK---IHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEK 130

Query: 215 IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL 274
           +F+ LP +D   WN +I GY  +G ++ A+ +F+ M E+G+     +  +IL+  +  G 
Sbjct: 131 VFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGD 190

Query: 275 VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
           +  G+     +              ++D+ G+    EDA+ +I  +  E D   W +++ 
Sbjct: 191 INNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDAL-MIFEMINEKDLFSWNSIIS 249

Query: 335 A 335
           A
Sbjct: 250 A 250


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 225/366 (61%), Gaps = 2/366 (0%)

Query: 51  IHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN 110
           + N  P+ VT+ +++PACA+   L  GK +H+     GL+ +L + NA+ DMY KC  + 
Sbjct: 4   LDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIE 63

Query: 111 LAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA 169
            AQ VFN I  +D +S+  ++ G +++    ESL+LF +M+L  ++ D ++ +G +SACA
Sbjct: 64  SAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACA 123

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
              A+ QGK IH +  +  ++  L +  +++D Y + G IDLA ++F  + V++  +WN 
Sbjct: 124 QTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNA 183

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD- 288
           +I G  M G  + AI+LF+ M  D +  D V++IA+L ACSH GLV++G   F  M+   
Sbjct: 184 MIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKF 243

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWA 348
            ++P   HY C+VDLL RA  ++DA+  I+N+P++ ++ +W  LLGACR  G+ +L    
Sbjct: 244 QIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKI 303

Query: 349 AEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQD 408
              +  L+P  CG Y++LSN+YA   +WD A K+R+ MK++  +K PGCSW++    +  
Sbjct: 304 XRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQ 363

Query: 409 FVVNDR 414
           FV  DR
Sbjct: 364 FVAGDR 369



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 128/246 (52%), Gaps = 3/246 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F+ I EK+++SW +M++  A++    ++L L R+M +H   P+ +T
Sbjct: 55  MYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEIT 114

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L  VL ACA+   L  GK IH  I +  +N DL L  AL DMYAKCG ++LA  VF  + 
Sbjct: 115 LVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMR 174

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+  ++N +I G +      +++SLF +M    +  D V+F+  + AC++   + +G  
Sbjct: 175 VRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLA 234

Query: 180 IHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGML 237
           +      K  +   +     ++D   R+ ++D A    + +P+K +S  W TL+      
Sbjct: 235 MFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSG 294

Query: 238 GEVDTA 243
           G  D A
Sbjct: 295 GHFDLA 300



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 119/242 (49%), Gaps = 4/242 (1%)

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
           +L  ++ D V+ +  + ACA L  +++GK +H  +    L  +L V N+ILD Y +   I
Sbjct: 3   KLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDI 62

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           + A ++F+ +  KD  SW +++ G    G    ++ LF  M+   +  D ++ + +L+AC
Sbjct: 63  ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSAC 122

Query: 270 SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIW 329
           +  G +++GK     +    +    +    +VD+  + G ++ A+++ + + V  +   W
Sbjct: 123 AQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTW 181

Query: 330 GALLGACRIYGNVE--LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
            A++G   ++G+ E  +  +       L P    +  LL    + AG  DE   + + MK
Sbjct: 182 NAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCAC-SHAGLVDEGLAMFQAMK 240

Query: 388 SR 389
           ++
Sbjct: 241 NK 242


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 149/452 (32%), Positives = 246/452 (54%), Gaps = 49/452 (10%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACA 69
           A  +F ++   N  S+N ++   +++     AL +  EM       PN  T  +V  AC 
Sbjct: 64  ARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACG 123

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC--------------------- 108
           R   LR G+++H   ++ GL+ D F+ + +  MY  CG                      
Sbjct: 124 RAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIR 183

Query: 109 -------------------------LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSES 142
                                    L +A+N+F+ +  R  VS+N++I GY+Q+    E+
Sbjct: 184 DKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEA 243

Query: 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
           + +F EM++  +  + V+ +  + A + L A++ GK +H   +R ++     + ++++D 
Sbjct: 244 VEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDM 303

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y + G I+ A ++F+ LP ++  +W+T+I G  M G     ++ FE M   GV    V+Y
Sbjct: 304 YAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTY 363

Query: 263 IAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
           I +L+ACSH GLV +G+ +FD M +   ++P   HY CMVDLLGRAGL+E++ +LI N+P
Sbjct: 364 IGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMP 423

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381
           ++PD  IW ALLGAC+++GNVE+G   AEHL  L P   G Y+ LSN+YA  G W+  +K
Sbjct: 424 IKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAK 483

Query: 382 VRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           VR +MK  + +K+PGCSW++    + +F+V D
Sbjct: 484 VRLMMKEMDVRKDPGCSWIELDGVIHEFLVED 515



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 138/267 (51%), Gaps = 4/267 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +      A  LF  + ++++VSWN M+A +AQ+    +A+++ REM +    PN VTL
Sbjct: 203 YVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTL 262

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            +VLPA +R   L  GK +H   +R  +  D  L +AL DMYAKCG +  A  VF  +  
Sbjct: 263 VSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPK 322

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ V+++ +I G +      ++L  F +M   G+    V+++G +SAC++   + +G+  
Sbjct: 323 RNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWF 382

Query: 181 HGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGMLG 238
               +R   L   +     ++D   R+G ++ + ++   +P+K D   W  L+    M G
Sbjct: 383 FDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHG 442

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAI 265
            V+    + E + E    +D  SY+A+
Sbjct: 443 NVEMGKRVAEHLMELA-PHDSGSYVAL 468



 Score = 45.4 bits (106), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 97/236 (41%), Gaps = 24/236 (10%)

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL--ANKIFDCLPVKDSASWNTLILGYG 235
           K++H   I+         A  +L F   S   DL  A KIF  +   +  S+NTLI    
Sbjct: 28  KQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALS 87

Query: 236 MLGEVDTAINLFEAMRED-GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              +   A+ +F  M ED  V  +  ++ ++  AC     + +G++         +   E
Sbjct: 88  ESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDE 147

Query: 295 MHYACMVDLLGRAGLMEDAVKLI--------------KNLPVEPDANIWGALLGACRIYG 340
              + +V +    G+MEDA +L               K   V+ D  +W  ++      G
Sbjct: 148 FVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIG 207

Query: 341 NVELGAWAAEHLFMLKPQH--CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394
            +E+    A +LF   PQ     + ++++  YA++G + EA +V   M+  E   N
Sbjct: 208 ELEV----ARNLFDEMPQRSVVSWNVMIAG-YAQSGHFKEAVEVFREMQMAEVPPN 258



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  + ++N+V+W+ ++A  A +      L    +M      P+ VT
Sbjct: 303 MYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVT 362

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCG 107
              +L AC+    +  G+     ++R  GL   +     + D+  + G
Sbjct: 363 YIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAG 410


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 150/445 (33%), Positives = 232/445 (52%), Gaps = 33/445 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           +A +    ++   F  +A++N+VSWN M+  +AQ     +A  L  EM       +  TL
Sbjct: 159 HASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTL 218

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI--- 118
            ++L AC+    L  G+ +H  ++  G   D  L NAL DMY KCG L +A   F++   
Sbjct: 219 VSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPI 278

Query: 119 -----------------------------SFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                          R+ VS+N +I  Y Q     E+L L++ M
Sbjct: 279 KNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRM 338

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
           R LG+  D  +  G +SAC     +  GK IH           + + NS+LD Y R G++
Sbjct: 339 RSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQV 398

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           D A  +F  +P K+  SWN +I    M G     +  F  M  D    D ++++ +L+AC
Sbjct: 399 DTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSAC 458

Query: 270 SHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           SHGGL+E G+ YF+ M +  +V+P   HY CMVDLLGR G +  AV LIK++ ++PD  +
Sbjct: 459 SHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVV 518

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
           WGALLGACRI+GNVE+G    + L  L+    G ++L+ N++ E  +W++  K+R+LMK 
Sbjct: 519 WGALLGACRIHGNVEIGKLVIKQLLELEGITGGLFVLICNLFYETNQWEDMKKLRKLMKE 578

Query: 389 REAKKNPGCSWVQTRDEVQDFVVND 413
           +  KK+ G S ++ ++ + +F V D
Sbjct: 579 QGTKKDMGVSSIEVKNIIHEFGVED 603



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 164/365 (44%), Gaps = 33/365 (9%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  I E +   +N +V  ++ +    +AL+L R +      PN  TL  VL AC  
Sbjct: 67  ARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTT 126

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
              +      H  +++ G    +F+ NAL   +A  G L  ++  F  ++ R+ VS+N +
Sbjct: 127 VRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTM 186

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I GY+Q  + SE+ +LF EMR  G+  DV + +  + AC++   ++ G+ +H   +    
Sbjct: 187 IGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGS 246

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS------------------------- 224
                + N++LD Y + G + +A++ FD +P+K+                          
Sbjct: 247 RVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQ 306

Query: 225 ------ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
                  SWN +I  Y   G +   ++L+  MR  G+  D  +   +L+AC   G +  G
Sbjct: 307 MPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASG 366

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
           K     ++ +   P       ++D+  R G ++ A+ L   +P   +   W  ++GA  +
Sbjct: 367 KMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMP-NKNVISWNVIIGALAM 425

Query: 339 YGNVE 343
           +G  +
Sbjct: 426 HGRAQ 430



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 131/273 (47%), Gaps = 10/273 (3%)

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYA------KCGCLNLAQNVFN-ISFRDEVSYNILIV 131
           +IHA ++  G +    + + L   Y       + G L  A+ +F+ I   D   YN L+ 
Sbjct: 28  QIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDRIPEPDRFMYNTLVR 87

Query: 132 GYSQTSDC-SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH 190
            YS  SDC  E+L L   +   G+  +  +    + AC  + A++     HGV ++    
Sbjct: 88  AYS-NSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHALAAHGVVVKLGFV 146

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
             +FVAN++L F+  +G +  + + F  +  ++  SWNT+I GY   GEV  A  LF  M
Sbjct: 147 QQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEM 206

Query: 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
           R  G+  D  + +++L ACS  G +E G+     M     +   +    ++D+ G+ G +
Sbjct: 207 RHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDL 266

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
             A +    +P++ +   W ++L A   +G+V+
Sbjct: 267 WMAHRCFDMMPIK-NVVTWTSMLCAQAKHGSVD 298



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+  +   A  LF  +  KN++SWN ++   A +    + +   R M      P+ +T
Sbjct: 391 MYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEIT 450

Query: 61  LTNVLPACARGHFLRPGK---EIHARI 84
              +L AC+ G  L  G+   E  AR+
Sbjct: 451 FVGLLSACSHGGLLEAGEYYFEAMARV 477


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 148/421 (35%), Positives = 240/421 (57%), Gaps = 2/421 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ K     +A  LF  + EK++ SW  MV          +A +L   M        S T
Sbjct: 162 MHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRT 221

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              ++ A A    ++ GK+IH+  +++G+  D F++ AL DMY+KCG +  A  VF+ + 
Sbjct: 222 FATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMP 281

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  V +N +I  Y+      E+LSL+ EMR  G   D  +    I  CA LA+++  K+
Sbjct: 282 EKTTVGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQ 341

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   +R    T +    +++DFY++ GR++ A  +F+ +  K+  SWN LI GYG  G+
Sbjct: 342 AHAALVRHGFATDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQ 401

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ +FE M ++GV    V+++A+L+ACS+ GL ++G + F  M+ D  VKP  MHYA
Sbjct: 402 GQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYA 461

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM++LLGR  L+++A  LI+  P +P AN+W ALL ACR++ N+ELG  AAE L+ ++P+
Sbjct: 462 CMIELLGRESLLDEAYALIRTAPFKPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPE 521

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
               YI+L N+Y  +GK  EA+ + + +K +  +  P CSWV+ + +   F+  D+  + 
Sbjct: 522 KLCNYIVLLNLYNSSGKLKEAAGILQTLKKKGLRMLPACSWVEVKKQPYAFLCGDKSHSQ 581

Query: 419 T 419
           T
Sbjct: 582 T 582



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 144/314 (45%), Gaps = 10/314 (3%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   ++ AC     +R  K +   +I  G   DL++ N +  M+ KCG +  A+ +F+ +
Sbjct: 120 TYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEM 179

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D  S+  ++ G   T + SE+  LF  M          +F   I A A L  ++ GK
Sbjct: 180 PEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFATMIRASAGLGLVQVGK 239

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH   +++ +    FV+ +++D Y++ G I+ A+ +FD +P K +  WN++I  Y + G
Sbjct: 240 QIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHG 299

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             + A++L+  MR+ G   D  +   ++  C+    +E  K+    +         +   
Sbjct: 300 YSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVANT 359

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML--- 355
            +VD   + G MEDA + + N     +   W AL+     YGN   G  A E    +   
Sbjct: 360 ALVDFYSKWGRMEDA-RHVFNRMRHKNVISWNALIAG---YGNHGQGQEAVEMFEQMLQE 415

Query: 356 --KPQHCGYYILLS 367
              P H  +  +LS
Sbjct: 416 GVTPTHVTFLAVLS 429



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 9/208 (4%)

Query: 141 ESLSLFSEMRLLGMKHD-----VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
           E++ LF    +L ++HD       ++   +SAC  L +I+  K +    I       L+V
Sbjct: 99  EAMELF---EILELEHDGYGVGASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYV 155

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            N +L  + + G +  A K+FD +P KD ASW T++ G    G    A  LF  M ++  
Sbjct: 156 MNRVLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFN 215

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
                ++  ++ A +  GLV+ GK+         V         ++D+  + G +EDA  
Sbjct: 216 DGRSRTFATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHC 275

Query: 316 LIKNLPVEPDANIWGALLGACRIYGNVE 343
           +   +P E     W +++ +  ++G  E
Sbjct: 276 VFDQMP-EKTTVGWNSIIASYALHGYSE 302


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 150/421 (35%), Positives = 242/421 (57%), Gaps = 6/421 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLEL-KALQLVREMPIHNEFPNSV 59
           +YA++    E   +F  + E + VSWN+++   + +   + +A++   +M       + V
Sbjct: 532 LYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRV 591

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
           T  N+L A +         +IHA +++  L+ D  + NAL   Y KCG +N  + +F   
Sbjct: 592 TFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARM 651

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              RDEVS+N +I GY       +++ L   M   G + D  +F   +SACA++A +++G
Sbjct: 652 SETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERG 711

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            E+H   IR  L + + V ++++D Y++ GRID A++ F+ +P+++  SWN++I GY   
Sbjct: 712 MEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARH 771

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMH 296
           G  + A+ LF  M  DG   D V+++ +L+ACSH G VE+G ++F  M +   + P   H
Sbjct: 772 GHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEH 831

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA-CRIYG-NVELGAWAAEHLFM 354
           ++CMVDLLGRAG +++    I ++P++P+  IW  +LGA CR  G N ELG  AAE L  
Sbjct: 832 FSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLE 891

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           L+PQ+   Y+LL+NMYA   KW++ +K R  MK    KK  GCSWV  +D V  FV  D+
Sbjct: 892 LEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDK 951

Query: 415 M 415
           +
Sbjct: 952 L 952



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 205/434 (47%), Gaps = 44/434 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAKS   A+A  +F  + EK+ VSWN++++   QN     A +    M      P++ T
Sbjct: 431 MYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFT 490

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L + L +CA   ++  G++IH   ++ GL+ D+ ++NAL  +YA+ GC      VF++  
Sbjct: 491 LISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMP 550

Query: 121 R-DEVSYNILIVGYSQT-SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             D+VS+N +I   S + +  S+++  F +M   G     V+F+  +SA ++L+  +   
Sbjct: 551 EYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSH 610

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLILGYGML 237
           +IH + ++  L     + N++L  Y + G ++   KIF  +   +D  SWN++I GY   
Sbjct: 611 QIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHN 670

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF-----DEMQADSVKP 292
             +  A++L   M + G   D  ++  IL+AC+    +E+G +         +++D V  
Sbjct: 671 ELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVG 730

Query: 293 T---EMHYAC-----------------------MVDLLGRAGLMEDAVKLIKNLPVE--- 323
           +   +M+  C                       M+    R G  E A+KL   + ++   
Sbjct: 731 SALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQP 790

Query: 324 PDANIWGALLGACRIYGNVELGAW---AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
           PD   +  +L AC   G VE G     +   ++ L P+   ++  + ++   AGK DE  
Sbjct: 791 PDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPR-VEHFSCMVDLLGRAGKLDE-- 847

Query: 381 KVRELMKSREAKKN 394
            V + + S   K N
Sbjct: 848 -VGDFINSMPMKPN 860



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 174/343 (50%), Gaps = 24/343 (6%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN---EF-PNSVTLTNVL 65
           +A  +F  I  +N +SWN++++ +++    + A  L   M        F PN  T  +++
Sbjct: 228 DARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLI 287

Query: 66  P-ACARGHF-LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRD 122
             AC+   F L   +++ AR+ + G   DL++++AL   +A+ G  + A+N+F  +  R+
Sbjct: 288 TTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRN 347

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMR-LLGMKHDVVSFMGAISACANLAAI----KQG 177
            VS N L+VG  +      +  +F EM+ L+G+  D  S++  +SA +  + +    ++G
Sbjct: 348 VVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD--SYVVLLSAFSEFSVLEEGRRKG 405

Query: 178 KEIHGVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           +E+H   IR  L+ + + + N +++ Y +SG I  A  +F+ +  KDS SWN+LI G   
Sbjct: 406 REVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQ 465

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK---PT 293
               + A   F  MR  G      + I+ L++C+  G +  G    +++  D +K    T
Sbjct: 466 NECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLG----EQIHCDGLKLGLDT 521

Query: 294 EMHYA-CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++  +  ++ L    G   + +K+   +P E D   W +++GA
Sbjct: 522 DVSVSNALLALYAETGCFTECLKVFSLMP-EYDQVSWNSVIGA 563



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 170/350 (48%), Gaps = 17/350 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y +      A  LF  ++ +N+V+W  +++ + QN    +A    R+M      PN   
Sbjct: 115 IYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYA 174

Query: 61  LTNVLPACARG--HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC-GCLNLAQNVFN 117
             + L AC        + G +IH  I +     D+ + N L  MY  C    N A++VF+
Sbjct: 175 FGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFD 234

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM----KHDVVSFMGAI-SACANL 171
            I  R+ +S+N +I  YS+  D   +  LFS M+  G+    K +  +F   I +AC+++
Sbjct: 235 GIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSSV 294

Query: 172 A-AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
              +   +++     +      L+V+++++  + R G  D A  IF+ + V++  S N L
Sbjct: 295 DFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGL 354

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           ++G     + + A  +F  M+ D VG +  SY+ +L+A S   ++E+G++   E+ A  +
Sbjct: 355 MVGLVKQKQGEAAAKVFHEMK-DLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVI 413

Query: 291 KP--TEMHYAC---MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +    +   A    +V++  ++G + DA  + + L VE D+  W +L+  
Sbjct: 414 RTGLNDNKVAIGNGLVNMYAKSGAIADACSVFE-LMVEKDSVSWNSLISG 462



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 140/273 (51%), Gaps = 20/273 (7%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
            +E+H + I+ G   +LFL+N L ++Y + G L  AQ +F+ +S R+ V++  LI GY+Q
Sbjct: 90  ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 149

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC--ANLAAIKQGKEIHGVTIRKHLHTHL 193
                E+ + F +M   G   +  +F  A+ AC  +  +  K G +IHG+  +    + +
Sbjct: 150 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDV 209

Query: 194 FVANSILDFYTRSGRIDLAN---KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
            V N ++  Y     +D AN    +FD + +++S SWN++I  Y   G+  +A +LF +M
Sbjct: 210 VVCNVLISMYGSC--LDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSM 267

Query: 251 REDGVGYD--PVSYI---AILTACSHGGLVEKGKKYFDEMQADSVKPTEMH----YACMV 301
           +++G+G+   P  Y     I TACS    V+ G    ++M A   K   +      + +V
Sbjct: 268 QKEGLGFSFKPNEYTFGSLITTACSS---VDFGLCVLEQMLARVEKSGFLQDLYVSSALV 324

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
               R GL +DA  + + + V    ++ G ++G
Sbjct: 325 SGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVG 357



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 52/99 (52%)

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           ++ +E+H  +I+     +LF++N++++ Y R G +  A K+FD +  ++  +W  LI GY
Sbjct: 88  EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 147

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
              G+ D A   F  M   G   +  ++ + L AC   G
Sbjct: 148 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 186


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 144/414 (34%), Positives = 236/414 (57%), Gaps = 5/414 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPI-HNEFPNSV 59
           MY+K     +A  +F  I  +N+ +WN+M++ +A       +L + REM   H+E P+  
Sbjct: 147 MYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEF 206

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLN--FDLFLTNALTDMYAKCGCLNLAQNVFN 117
           T  ++L AC+     R G ++HA +  +G++   +  L  AL D+Y KC  L +A  VF+
Sbjct: 207 TFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFD 266

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  R+ + +  +IVG++Q     E++ LF      G++ D       ++  A+ A ++Q
Sbjct: 267 GLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQ 326

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK++H  T +      + VANS++D Y + G    A + F  +P ++  SW  +I G G 
Sbjct: 327 GKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGK 386

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEM 295
            G    AI+LFE M+E+GV  D V+Y+A+L+ACSH GLV++ ++YF  + Q   ++P   
Sbjct: 387 HGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAE 446

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HYACMVDLLGRAG + +A +LI ++P+EP   +W  LL ACR++ +V +G    + L  +
Sbjct: 447 HYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVLLAV 506

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
              +   Y++LSN+ AEAG+W E   +R  M+ +  +K  GCSW +   EV  F
Sbjct: 507 DGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCSWTEVDKEVHFF 560



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 177/385 (45%), Gaps = 48/385 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  +   A  +F  + E+N+VSW A++  F  +    + L+L  EM      PN  T
Sbjct: 48  MYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFT 107

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L+  L AC  G   R G +IH   +R G      + N+L  MY+K      A+ VF+ I 
Sbjct: 108 LSATLKACGGG--TRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIP 165

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGK 178
            R+  ++N +I GY+      +SL +F EM R    + D  +F   + AC+ L A ++G 
Sbjct: 166 SRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGA 225

Query: 179 EIHGVTIRKHLH--THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           ++H     + +   ++  +A ++LD Y +  R+ +A ++FD L  +++  W T+I+G+  
Sbjct: 226 QVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQ 285

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK----------------- 279
            G+V  A+ LF      GV  D     +++   +   LVE+GK                 
Sbjct: 286 EGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSV 345

Query: 280 ------------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
                             + F EM A +V    + +  M++ +G+ G   +A+ L + + 
Sbjct: 346 ANSLVDMYLKCGLTGEAGRRFREMPARNV----VSWTAMINGVGKHGHGREAIDLFEEMQ 401

Query: 322 ---VEPDANIWGALLGACRIYGNVE 343
              VE D   + ALL AC   G V+
Sbjct: 402 EEGVEADEVAYLALLSACSHSGLVD 426



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 123/235 (52%), Gaps = 4/235 (1%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + ++L A ARG  LR G ++HA +++ G   D  L N L DMYAKCG L++A  VF+ + 
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ VS+  L+VG+    +  E L LF EMR  G   +  +    + AC      + G +
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQ 124

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHGV +R     H  VANS++  Y++      A ++FD +P ++ A+WN++I GY   G+
Sbjct: 125 IHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQ 184

Query: 240 VDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
              ++ +F  M R      D  ++ ++L ACS  G   +G +    M    V P 
Sbjct: 185 GRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPA 239


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  274 bits (700), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 146/424 (34%), Positives = 243/424 (57%), Gaps = 6/424 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+KS    +A  LF  +  +   SWN+M+A +A      +AL+L R M      PN++T+
Sbjct: 161 YSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITI 220

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             +   CA+   L  GK   + I  + L  ++ +  AL +MY KC  ++ A+  F+ +  
Sbjct: 221 ATMFSICAKTGDLETGKWARSLIAEQDLQ-NMIVHTALMEMYVKCRAIDEARREFDRMQQ 279

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD V+++ +I GY+Q     ESL LF  M+    K + V+ +G +SACA L + + G +I
Sbjct: 280 RDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQI 339

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
                 ++L    ++ ++++D YT+ G +  A  +F+ +  K   +WN+++ G  + G  
Sbjct: 340 GSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFA 399

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYAC 299
             AI L++ M E+ V  + ++++A+LTAC+H GLV++G  +F EM+    V P   H AC
Sbjct: 400 QDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCAC 459

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLL ++G + +A K I ++ VEP+A IW  LL ACR + +VEL   AA  L +L+P +
Sbjct: 460 IVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLEPDN 519

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
              Y+LLSN+YA+AG W +  ++R+LM+S+  +K    SW++   EV  F+V D   T+ 
Sbjct: 520 SSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELDGEVHKFLVQD---TYH 576

Query: 420 PGPA 423
           P  A
Sbjct: 577 PKSA 580



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 171/397 (43%), Gaps = 77/397 (19%)

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           P  V L  V+ +CA     R GK++H   I +GL  D+F+  AL D YAK G ++ A  V
Sbjct: 85  PGCVPL--VVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKV 142

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDC-------------------------------SESL 143
           F+ +  +D +  N LI GYS++ D                                 E+L
Sbjct: 143 FDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEAL 202

Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203
            LF  M   G + + ++     S CA    ++ GK    +   + L  ++ V  ++++ Y
Sbjct: 203 RLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQ-NMIVHTALMEMY 261

Query: 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI 263
            +   ID A + FD +  +D  +W+T+I GY   G    ++ LFE M+      + V+ +
Sbjct: 262 VKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLV 321

Query: 264 AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL------LGRA---------- 307
            +L+AC+  G  E G +    +++ ++  T    + ++D+      +GRA          
Sbjct: 322 GVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHK 381

Query: 308 ---------------GLMEDAVKLIKNLP---VEPDANIWGALLGACRIYGNVELGAW-- 347
                          G  +DA+ L K +    V+P+   + ALL AC   G V+ G    
Sbjct: 382 VVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFF 441

Query: 348 -AAEHLFMLKPQ--HCGYYILLSNMYAEAGKWDEASK 381
              + +  + PQ  HC   +   ++  ++G+  EA K
Sbjct: 442 KEMKTIHHVSPQVEHCACIV---DLLCKSGRLREAYK 475



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 125/237 (52%), Gaps = 9/237 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     EA   F  + ++++V+W+ M+A +AQN    ++L+L   M   +  PN VT
Sbjct: 260 MYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVT 319

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  VL ACA+      G +I + +  + L    +L +AL DMY KCG +  A++VFN + 
Sbjct: 320 LVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRME 379

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-- 177
            +  +++N ++ G +      ++++L+ EM    ++ + ++F+  ++AC +   + QG  
Sbjct: 380 HKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMS 439

Query: 178 --KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
             KE+  +    H+   +     I+D   +SGR+  A K    + V+ +A  W+TL+
Sbjct: 440 FFKEMKTI---HHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLL 493



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 134/303 (44%), Gaps = 6/303 (1%)

Query: 93  LFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSY-NILIVGYSQTSDCSESLSLFSEMRL 151
           L  T  L D+ +       A+++F+   R   +    LI   S+     E L  FS +  
Sbjct: 19  LLKTRPLHDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHR 78

Query: 152 LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211
            G           + +CA LAA +QGK++H   I + L   +FV  +++DFY ++G +D 
Sbjct: 79  RGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDC 138

Query: 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271
           A K+FD +PVKD    N LI GY   G+V  A  LF+ M    V     S+ +++   +H
Sbjct: 139 AVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGM----VRRTSASWNSMIACYAH 194

Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
           GG  ++  + F  M ++  +P  +  A M  +  + G +E   K  ++L  E D      
Sbjct: 195 GGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETG-KWARSLIAEQDLQNMIV 253

Query: 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
                 +Y        A      ++ +    +  +   YA+ G+  E+ ++ E MK+   
Sbjct: 254 HTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSC 313

Query: 392 KKN 394
           K N
Sbjct: 314 KPN 316


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  274 bits (700), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 148/417 (35%), Positives = 234/417 (56%), Gaps = 2/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A   F     KN ++W+AMV  FAQ     KAL+L  +M    E P+  T
Sbjct: 263 MYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFT 322

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  V+ AC+    +  G+++H   ++ G    L++ +AL DMYAKCG +  A+  F  I 
Sbjct: 323 LVGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQ 382

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V +  +I GY Q  D   +L+L+ +M+L G+  + ++    + AC+NLAA+ QGK+
Sbjct: 383 QPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQ 442

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+ +    + + +++   Y + G +D   +IF  +P +D  SWN +I G    G 
Sbjct: 443 MHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGR 502

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            +  + LFE M  +G   D V+++ +L+ACSH GLV++G  YF  M  + ++ PT  HYA
Sbjct: 503 GNEGLELFEKMCLEGTKPDNVTFVNLLSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHYA 562

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+L RAG + +A + I++  V+    +W  LL A + + + +LGA+A E L  L   
Sbjct: 563 CMVDILSRAGKLHEAKEFIESATVDHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGSL 622

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
               Y+LLS++Y   GKW++  +VR +MK+R   K PGCSW++ +     FVV D M
Sbjct: 623 ESSAYVLLSSIYTALGKWEDVERVRGMMKARGVTKEPGCSWIELKSLTHVFVVGDNM 679



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 208/438 (47%), Gaps = 53/438 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLE---LKALQLVREMPIHNE--F 55
           +YAK S  ++A+ +F +I  K++VSWN ++  F+Q +     L  + L R++ + ++   
Sbjct: 54  LYAKCSHFSKANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIV 113

Query: 56  PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           PN+ TLT V  A +     R G++ HA  ++   + D+F  ++L +MY K G +  A+++
Sbjct: 114 PNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDL 173

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL--LGMKHDVVSFMGAISACANLA 172
           F+ +  R+ VS+  +I GY+      E+  LF  MR    G   +   F   +SA     
Sbjct: 174 FDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYM 233

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
            +  G+++H + ++  L   + VAN+++  Y + G ++ A K F+    K+S +W+ ++ 
Sbjct: 234 LVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVT 293

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK- 291
           G+   G+ D A+ LF  M + G      + + ++ ACS    + +G+    +M   S+K 
Sbjct: 294 GFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGR----QMHGYSLKL 349

Query: 292 PTEMH---YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL----------GACRI 338
             E+     + +VD+  + G + DA K  + +  +PD  +W +++          GA  +
Sbjct: 350 GYELQLYVLSALVDMYAKCGSIVDARKGFECIQ-QPDVVLWTSIITGYVQNGDYEGALNL 408

Query: 339 YGNVELGAWAAEHLFML---------------KPQHCGYYIL-----------LSNMYAE 372
           YG ++LG      L M                K  H G               LS MYA+
Sbjct: 409 YGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAK 468

Query: 373 AGKWDEASKVRELMKSRE 390
            G  D+  ++   M +R+
Sbjct: 469 CGSLDDGYRIFWRMPARD 486



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 146/301 (48%), Gaps = 9/301 (2%)

Query: 49  MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
           MP+       + +   L  C R   LR G+ +HARI+  G      + N+L ++YAKC  
Sbjct: 1   MPLLPLSHQHLQVLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSH 60

Query: 109 LNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV-----SFM 162
            + A  VF+ I+ +D VS+N LI  +SQ    + SL +    R L M H  +     +  
Sbjct: 61  FSKANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLT 120

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
           G  +A + L+  + G++ H + ++      +F A+S+L+ Y ++G +  A  +FD +P +
Sbjct: 121 GVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPER 180

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMR--EDGVGYDPVSYIAILTACSHGGLVEKGKK 280
           ++ SW T+I GY      D A  LF+ MR  E G   +   + ++L+A +   LV  G++
Sbjct: 181 NAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQ 240

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
                  + +         +V +  + G +EDA+K  + L    ++  W A++     +G
Sbjct: 241 VHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFE-LSGNKNSITWSAMVTGFAQFG 299

Query: 341 N 341
           +
Sbjct: 300 D 300



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 105/284 (36%), Gaps = 52/284 (18%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           M LL + H  +  + A+  C     +++G+ +H   +     +   +ANS+++ Y +   
Sbjct: 1   MPLLPLSHQHLQVLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSH 60

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE---------------- 252
              AN +FD +  KD  SWN LI  +        ++++    R+                
Sbjct: 61  FSKANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLT 120

Query: 253 ----------DGVGYDPVSYIAILTACSHG--------------GLVEKGKKYFDEMQAD 288
                     D         +A+ TACSH               GLV + +  FDEM   
Sbjct: 121 GVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMP-- 178

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN-----IWGALLGACRIYGNVE 343
             +   + +A M+       L ++A +L K +  E         ++ ++L A   Y  V 
Sbjct: 179 --ERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVN 236

Query: 344 LGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWDEASKVREL 385
            G      L M     C   +   L  MY + G  ++A K  EL
Sbjct: 237 TGR-QVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFEL 279


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  274 bits (700), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 154/451 (34%), Positives = 254/451 (56%), Gaps = 39/451 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+ K      A  +F ++  K++VSW +M   +    +  + + L REM ++    NS+T
Sbjct: 121 MFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLT 180

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           ++++LPACA   +++ G+E+H  I+R  +  ++++++AL +MYA    L  A+ VF+  +
Sbjct: 181 VSSILPACA--DYIKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMY 238

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC----------- 168
            RD VS+N+++  Y    +    L LF +MR  G+K +  S+  AIS C           
Sbjct: 239 HRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALG 298

Query: 169 ------------------------ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204
                                    NL +++ GKEIHG   R      + +  +++  Y 
Sbjct: 299 ILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYA 358

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264
           + G ++L+  +F+ +P KD  +WNT+I+   M G+   ++ LF  M + GV  + V++I 
Sbjct: 359 KCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIG 418

Query: 265 ILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
           +L+ CSH  L ++G   F+ M ++ S+ P   HY+CMVD+L RAG +E+A   I+ +P+E
Sbjct: 419 VLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIE 478

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVR 383
           P A  WGALLGACR+Y NVELG  AA  LF ++P + G Y+LLSN+   A KW EAS++R
Sbjct: 479 PTAAAWGALLGACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIR 538

Query: 384 ELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           ++M+ +   K PG SWVQ +++V  FV  D+
Sbjct: 539 KMMRDKGLAKTPGRSWVQVKNKVYSFVTGDK 569



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 148/287 (51%), Gaps = 3/287 (1%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
            A YLF  I E ++ +W  +++   Q+    KA+ +   +   N  P+   L +V  ACA
Sbjct: 29  RALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKACA 88

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
               L   K+IH   I+ G N DL L NAL DM+ KC  +N A+ VF+ +  +D VS+  
Sbjct: 89  ASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTS 148

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           +   Y     C + + LF EM L G++ + ++    + ACA+   IK G+E+HG  +R  
Sbjct: 149 MTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADY--IKLGREVHGFILRNE 206

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           +  +++V++++++ Y  S  +  A  +FD +  +D  SWN ++  Y +  E +  + LF 
Sbjct: 207 MEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFH 266

Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
            MR++G+  +  S+ A ++ C   G  E       +MQ   +KP  +
Sbjct: 267 QMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRI 313



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 7/138 (5%)

Query: 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
           SG +  A  +FD +P  D  +W  LI G+   G    AI+++  +    V  D    +++
Sbjct: 24  SGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSV 83

Query: 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD 325
             AC+  G +   KK  D+          +    ++D+ G+   +  A  +  ++ V+ D
Sbjct: 84  AKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVK-D 142

Query: 326 ANIWGALL------GACR 337
              W ++       G CR
Sbjct: 143 VVSWTSMTYCYVNCGMCR 160


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  274 bits (700), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 145/421 (34%), Positives = 243/421 (57%), Gaps = 11/421 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K+    EA  +F  +  +N+ +WNA ++N  Q+   L A+   ++    +  PN++T
Sbjct: 153 MYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAIT 212

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
               L ACA    L  G+++H  I+R     D+ + N L D Y KCG +  ++ VF+   
Sbjct: 213 FCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIG 272

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM--GAISACANLAAIK 175
              R+ VS+  L+    Q  +   +  +F + R    + +   FM    +SACA L  ++
Sbjct: 273 SGRRNVVSWCSLLAALVQNHEEERACMVFLQAR---KEVEPTDFMISSVLSACAELGGLE 329

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G+ +H + ++  +  ++FV ++++D Y + G I+ A ++F  +P ++  +WN +I GY 
Sbjct: 330 LGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERNLVTWNAMIGGYA 389

Query: 236 MLGEVDTAINLFEAMRED--GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKP 292
            LG+VD A++LF+ M     G+    V+ +++L+ACS  G VE+G + F+ M+    ++P
Sbjct: 390 HLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQIFESMRGRYGIEP 449

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
              HYAC+VDLLGR+GL++ A + IK +P+ P  ++WGALLGAC+++G  +LG  AAE L
Sbjct: 450 GAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMHGKTKLGKIAAEKL 509

Query: 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVN 412
           F L P   G +++ SNM A AG+W+EA+ VR+ M+    KKN G SWV  ++ V  F   
Sbjct: 510 FELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGIKKNVGYSWVAVKNRVHVFQAK 569

Query: 413 D 413
           D
Sbjct: 570 D 570



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 190/401 (47%), Gaps = 20/401 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K   P  A  +      + +V+W ++++    NR    AL     M      PN  T
Sbjct: 52  MYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFT 111

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              V  A A  H    GK++HA  ++ G   D+F+  +  DMY+K G    A+N+F+ + 
Sbjct: 112 FPCVFKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMP 171

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+  ++N  +    Q   C ++++ F +   +  + + ++F   ++ACA++ +++ G++
Sbjct: 172 HRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQ 231

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNTLILGYGML 237
           +HG  +R      + V N ++DFY + G I  +  +F  +    ++  SW +L+      
Sbjct: 232 LHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQN 291

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
            E + A  +F   R++    +P  ++  ++L+AC+  G +E G+          V+    
Sbjct: 292 HEEERACMVFLQARKE---VEPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIF 348

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM- 354
             + +VDL G+ G +E A ++ + +P E +   W A++G     G+V++    A  LF  
Sbjct: 349 VGSALVDLYGKCGSIEYAEQVFREMP-ERNLVTWNAMIGGYAHLGDVDM----ALSLFQE 403

Query: 355 LKPQHCG----YYILLSNMYA--EAGKWDEASKVRELMKSR 389
           +    CG    Y  L+S + A   AG  +   ++ E M+ R
Sbjct: 404 MTSGSCGIALSYVTLVSVLSACSRAGAVERGLQIFESMRGR 444


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  274 bits (700), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 145/417 (34%), Positives = 245/417 (58%), Gaps = 4/417 (0%)

Query: 2   YAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           Y+K      A  LF  I    +++VSWN+M+A +A     +KA+   + M      P+  
Sbjct: 199 YSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDIS 258

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T+ N+L +C +   L  G  +H+  ++ G + D+ + N L  MY+KCG ++ A+ +FN +
Sbjct: 259 TILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGM 318

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           S +  VS+ ++I  Y++    SE+++LF+ M   G K D+V+ +  IS C    A++ GK
Sbjct: 319 SDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGK 378

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            I   +I   L  ++ V N+++D Y + G  + A ++F  +  +   SW T+I    + G
Sbjct: 379 WIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNG 438

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHY 297
           +V  A+ LF  M E G+  + ++++A+L AC+HGGLVE+G + F+ M Q   + P   HY
Sbjct: 439 DVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGINPGIDHY 498

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +CMVDLLGR G + +A+++IK++P EPD+ IW ALL AC+++G +E+G + +E LF L+P
Sbjct: 499 SCMVDLLGRKGHLREALEIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYVSEQLFELEP 558

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           Q    Y+ ++N+YA A  W+  + +R  MK  + +K+PG S +Q   +   F V DR
Sbjct: 559 QVAVPYVEMANIYASAEMWEGVAAIRRNMKYLQVRKSPGQSIIQVNGKPTIFTVEDR 615



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 190/404 (47%), Gaps = 14/404 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  R  +A  +F  +  ++I SWNAM+  FAQ+    +   L+R M +    P++VT
Sbjct: 97  MYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDAVT 156

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---N 117
           +  ++ +  R   L     +++  IR G++ D+ + N L   Y+KCG L  A+ +F   N
Sbjct: 157 VLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEIN 216

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              R  VS+N +I  Y+      ++++ +  M   G   D+ + +  +S+C    A+  G
Sbjct: 217 SGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHG 276

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
             +H   ++    + + V N+++  Y++ G +  A  +F+ +  K   SW  +I  Y   
Sbjct: 277 LLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEK 336

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G +  A+ LF AM   G   D V+ +A+++ C   G +E GK   +    + +K   +  
Sbjct: 337 GYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINNGLKDNVVVC 396

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--- 354
             ++D+  + G   DA +L   +      + W  ++ AC + G+V+    A E  FM   
Sbjct: 397 NALIDMYAKCGGFNDAKELFYTMANRTVVS-WTTMITACALNGDVKD---ALELFFMMLE 452

Query: 355 --LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPG 396
             +KP H  +  +L    A  G  +   +   +M +++   NPG
Sbjct: 453 MGMKPNHITFLAVLQAC-AHGGLVERGLECFNMM-TQKYGINPG 494



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 180/411 (43%), Gaps = 48/411 (11%)

Query: 22  NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81
            + +WN+   +         AL L R+M      PN+ T   VL ACA+   LR  + IH
Sbjct: 17  TLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIH 76

Query: 82  ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCS 140
           A +++     ++F+  A  DMY KCG L  A NVF  +  RD  S+N +++G++Q+    
Sbjct: 77  AHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLD 136

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
               L   MRL G++ D V+ +  I +   + ++     ++   IR  +H  + VAN+++
Sbjct: 137 RLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLI 196

Query: 201 DFYTRSGRIDLANKIFDCL--PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
             Y++ G +  A  +FD +   ++   SWN++I  Y    +   A+N ++ M + G   D
Sbjct: 197 AAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPD 256

Query: 259 PVSYIAILTAC-------------SHG----------------------GLVEKGKKYFD 283
             + + +L++C             SHG                      G V   +  F+
Sbjct: 257 ISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFN 316

Query: 284 EMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV---EPDANIWGALLGACRIYG 340
            M       T + +  M+      G M +A+ L   +     +PD     AL+  C   G
Sbjct: 317 GMS----DKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTG 372

Query: 341 NVELGAWAAEHLFM--LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
            +ELG W   +     LK        L+ +MYA+ G +++A ++   M +R
Sbjct: 373 ALELGKWIDNYSINNGLKDNVVVCNALI-DMYAKCGGFNDAKELFYTMANR 422



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 132/255 (51%), Gaps = 3/255 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A +LF+ +++K  VSW  M++ +A+     +A+ L   M    E P+ VT
Sbjct: 301 MYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVT 360

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +  ++  C +   L  GK I    I  GL  ++ + NAL DMYAKCG  N A+ +F  ++
Sbjct: 361 VLALISGCGQTGALELGKWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMA 420

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS+  +I   +   D  ++L LF  M  +GMK + ++F+  + ACA+   +++G E
Sbjct: 421 NRTVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLE 480

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGML 237
              +  +K+ ++  +   + ++D   R G +  A +I   +P + DS  W+ L+    + 
Sbjct: 481 CFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMPFEPDSGIWSALLSACKLH 540

Query: 238 GEVDTAINLFEAMRE 252
           G+++    + E + E
Sbjct: 541 GKMEMGKYVSEQLFE 555



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 88/166 (53%), Gaps = 15/166 (9%)

Query: 106 CG---CLNLAQNVF--NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS 160
           CG   C+N    +F  N +FR  V+      G++Q      +L LF +M+  G+  +  +
Sbjct: 6   CGVTPCINRFSTLFTWNSNFRHLVNQ-----GHAQ-----NALILFRQMKQSGITPNNST 55

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           F   + ACA L+ ++  + IH   ++    +++FV  + +D Y + GR++ A+ +F  +P
Sbjct: 56  FPFVLKACAKLSHLRNSQIIHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMP 115

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266
           V+D ASWN ++LG+   G +D    L   MR  G+  D V+ + ++
Sbjct: 116 VRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDAVTVLLLI 161


>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score =  274 bits (700), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 148/424 (34%), Positives = 245/424 (57%), Gaps = 6/424 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K+    +A  LF  +  +   SWN+M+A +A      +AL L   M      PN++T+
Sbjct: 146 YSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNAITI 205

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T+V   CA+   L  GK +   I    L  ++ +  AL +MY KC  ++ A+  F+ +S 
Sbjct: 206 TSVFSICAKSGDLDTGKRVRDLIGEDDLQ-NVIVHTALMEMYVKCRAIDDARREFDRMSQ 264

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD V+++ +I GY+Q     ESL LF  M+    + + V+ +G ISACA L + +  ++I
Sbjct: 265 RDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQI 324

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
                 + L    ++ ++++D YTR G +  A  +F  +  K   +WN++I G  M G  
Sbjct: 325 GNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFA 384

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYAC 299
           + AI+L+E M E+GV  + ++++A+L AC+H GLV++G  +F+EM+ +  V P   H AC
Sbjct: 385 EDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCAC 444

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLL ++G + +A K I ++ VEP+A IW  LL +CR + +VEL   A+  L  ++P +
Sbjct: 445 IVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAMEPDN 504

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
              Y+LLSN+YA+AG W +A ++R+LM+S+  +K    SW++   EV  F+V D   T+ 
Sbjct: 505 SSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLDGEVHKFLVQD---TYH 561

Query: 420 PGPA 423
           P  A
Sbjct: 562 PRSA 565



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 162/410 (39%), Gaps = 82/410 (20%)

Query: 43  LQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDM 102
           LQ    M     +  S  +  V  +CA       G+++H   + +GL  D+F+  AL D 
Sbjct: 55  LQTFSSMHRKGAYVPSGCVPLVFKSCALTASSCQGRQVHCHALVRGLLGDVFVLTALVDF 114

Query: 103 YAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCS--------------------- 140
           YAK G +  A + F+ +  +D +  N LI GYS+  D                       
Sbjct: 115 YAKNGDMESAVSAFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMI 174

Query: 141 ----------ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH 190
                     E+L+LF  M   G + + ++     S CA    +  GK +  +     L 
Sbjct: 175 ACYAHGGEFREALALFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQ 234

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
            ++ V  ++++ Y +   ID A + FD +  +D  +W+T+I GY   G    ++ LFE M
Sbjct: 235 -NVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERM 293

Query: 251 REDGVGYDPVSYIAILTACSHGG---LVE------------------------------- 276
           +      + V+ + +++AC+  G   LVE                               
Sbjct: 294 KATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHV 353

Query: 277 -KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGAL 332
            + +  F  M+   V    + +  M+  L   G  EDA+ L + +    V+P+   + AL
Sbjct: 354 GRARSVFSRMEQKGV----ITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVAL 409

Query: 333 LGACRIYGNVELG-----AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWD 377
           L AC   G V+ G         EHL   + +HC   + L  +    G W+
Sbjct: 410 LAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACIVDL--LCKSGGLWE 457



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 123/234 (52%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A   F  ++++++V+W+ M+A +AQN   L++L+L   M   +  PN VT
Sbjct: 245 MYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVT 304

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  V+ ACA+       ++I      + L    +L +AL DMY +CG +  A++VF+ + 
Sbjct: 305 LVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRME 364

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  +++N +I G +      +++SL+ +M   G++ + ++F+  ++AC +   + QG  
Sbjct: 365 QKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMA 424

Query: 180 IHGVTIRKHLHT-HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
                 R+HL +  +     I+D   +SG +  A K    + V+ +A  W TL+
Sbjct: 425 FFEEMKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLL 478



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 6/215 (2%)

Query: 112 AQNVFNISFRDEVSY-NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170
           A+N+F+   R   +  +  +   S+ S   + L  FS M   G             +CA 
Sbjct: 23  ARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCAL 82

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
            A+  QG+++H   + + L   +FV  +++DFY ++G ++ A   FD +PVKD    N L
Sbjct: 83  TASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPINCL 142

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
           I GY   G+VD A  LF+ M          S+ +++   +HGG   +    FD M ++  
Sbjct: 143 ITGYSKAGDVDKARRLFDGMER----RTSASWNSMIACYAHGGEFREALALFDRMLSEGA 198

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD 325
           +P  +    +  +  ++G + D  K +++L  E D
Sbjct: 199 RPNAITITSVFSICAKSGDL-DTGKRVRDLIGEDD 232


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  274 bits (700), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 146/414 (35%), Positives = 246/414 (59%), Gaps = 6/414 (1%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN--SVTLTNVLPA 67
           +A  LF  + EK++ SW  M+  F  +    +A  L   + +  EF +  S T T ++ A
Sbjct: 170 DARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLF--LCMWEEFNDGRSRTFTTMIRA 227

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSY 126
            A    ++ G++IH+  +++G+  D F++ AL DMY+KCG +  A  VF+ +  +  V +
Sbjct: 228 SAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGW 287

Query: 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186
           N +I  Y+      E+LS + EMR  G K D  +    I  CA LA+++  K+ H   +R
Sbjct: 288 NSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVR 347

Query: 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL 246
           +   T +    +++DFY++ GR++ A  +F+ +  K+  SWN LI GYG  G+ + A+ +
Sbjct: 348 RGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEM 407

Query: 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLG 305
           FE M  +G+  + V+++A+L+ACS+ GL E+G + F  M  D  VKP  MHYACMV+LLG
Sbjct: 408 FEQMLREGMIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLG 467

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365
           R GL+++A +LI++ P +P  N+W  LL ACR++ N+ELG  AAE+L+ ++P+    YI+
Sbjct: 468 REGLLDEAYELIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIV 527

Query: 366 LSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
           L N+Y  +GK  EA+ V + +K +  +  P C+W++ + +   F+  D+  + T
Sbjct: 528 LLNLYNSSGKLKEAAGVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQT 581



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 147/315 (46%), Gaps = 12/315 (3%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   ++ AC     +R  K +   ++  G   DL++ N +  ++ KCG +  A+ +F+ +
Sbjct: 119 TYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEM 178

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D  S+  +I G+  + + SE+  LF  M          +F   I A A L  ++ G+
Sbjct: 179 PEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVGR 238

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IH   +++ +    FV+ +++D Y++ G I+ A+ +FD +P K +  WN++I  Y + G
Sbjct: 239 QIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHG 298

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             + A++ +  MR+ G   D  +   ++  C+    +E  K+    +         +   
Sbjct: 299 YSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANT 358

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF--MLK 356
            +VD   + G MEDA  +   +    +   W AL+     YGN   G  A E +F  ML+
Sbjct: 359 ALVDFYSKWGRMEDAWHVFNRMR-RKNVISWNALIAG---YGNHGQGEEAVE-MFEQMLR 413

Query: 357 ----PQHCGYYILLS 367
               P H  +  +LS
Sbjct: 414 EGMIPNHVTFLAVLS 428



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 9/208 (4%)

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGA-----ISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
           E++ LF    +L ++HD     G+     +SAC  L +I+  K +    +       L+V
Sbjct: 98  EAMELFE---ILELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYV 154

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            N +L  + + G +  A K+FD +P KD ASW T+I G+   G    A  LF  M E+  
Sbjct: 155 MNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFN 214

Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
                ++  ++ A +  GLV+ G++         V         ++D+  + G +EDA  
Sbjct: 215 DGRSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHC 274

Query: 316 LIKNLPVEPDANIWGALLGACRIYGNVE 343
           +   +P E     W +++ +  ++G  E
Sbjct: 275 VFDQMP-EKTTVGWNSIIASYALHGYSE 301


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  274 bits (700), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 148/420 (35%), Positives = 230/420 (54%), Gaps = 11/420 (2%)

Query: 1   MYAKSSRPAEASYLFHNIA-EKNIVSWNAMVANFAQNRLELKALQLVREMPI------HN 53
           +Y+K  R  +A  +F      + + +WNAM++ +A       AL + REM          
Sbjct: 363 LYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQ 422

Query: 54  EFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNL 111
             P+  T  ++L AC      R G ++HA +   G +   +  L  AL DMY KCG L +
Sbjct: 423 HQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPV 482

Query: 112 AQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170
           A  VF  +  ++ + +  ++VG++Q     E+L LF      G + D       +   A+
Sbjct: 483 AMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSIVGVLAD 542

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
            A ++QG+++H   ++    T +   NSI+D Y + G  D A ++F  +P ++  SW T+
Sbjct: 543 FALVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTM 602

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-S 289
           I G G  G    A+ +FE MR  GV  D V+Y+A+L+ACSH GLV++ ++YF  ++ D +
Sbjct: 603 INGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRT 662

Query: 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAA 349
           V+P   HYACMVDLLGRAG + +A  LI+ +P+EP   +W  LL ACR++ +V +G  A 
Sbjct: 663 VRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAG 722

Query: 350 EHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
           + L  +   +   Y+ LSN++AEAG W E  KVR+ M+ R  KK  GCSWV+   EV  F
Sbjct: 723 DVLLAIDGDNPVNYVTLSNVFAEAGAWRECHKVRDAMRRRGLKKQGGCSWVEIGKEVHFF 782



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 197/442 (44%), Gaps = 64/442 (14%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSV 59
           MYAK      A  +F  + ++N+VSW A++  F Q+      L+L+ EM   +E  PN  
Sbjct: 261 MYAKCGELDMAGEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEY 320

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           TL+  L AC     +  G  IH   +R G      + ++L  +Y+K G +  A+ VF+ +
Sbjct: 321 TLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCA 380

Query: 120 --FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH------DVVSFMGAISACANL 171
              R   ++N +I GY+      ++L +F EMR    +H      D  +F   + AC  L
Sbjct: 381 GLGRGLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGL 440

Query: 172 AAIKQGKEIHGVTIRKHLHT--HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
            A ++G ++H         T  +  +A +++D Y + GR+ +A ++F+ L  K++  W T
Sbjct: 441 GAPREGAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTT 500

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK---------- 279
           +++G+   G+V  A+ LF      G   D     +I+   +   LVE+G+          
Sbjct: 501 VVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSP 560

Query: 280 -------------------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
                                    + F E+ A +V    + +  M++ LG+ GL  +AV
Sbjct: 561 AGTDVSAGNSIVDMYLKCGLPDEAERMFREIPARNV----VSWTTMINGLGKHGLGREAV 616

Query: 315 KLIKNL---PVEPDANIWGALLGACRIYGNVE-----LGAWAAEHLFMLKPQHCGYYILL 366
            + + +    VEPD   + ALL AC   G V+           +     K +H   Y  +
Sbjct: 617 AMFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEH---YACM 673

Query: 367 SNMYAEAGKWDEASKVRELMKS 388
            ++   AG+  EA   R+L+++
Sbjct: 674 VDLLGRAGELREA---RDLIRT 692



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 138/287 (48%), Gaps = 16/287 (5%)

Query: 50  PIHNEFPNSVT-----LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104
           P+   FP +       + ++L A A+G  LR G ++H  + + G   D  L N L DMYA
Sbjct: 204 PVAFPFPTNPMERRKMIADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYA 263

Query: 105 KCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFM 162
           KCG L++A  VF  +  R+ VS+  L+VG+ Q  D +  L L  EMR       +  +  
Sbjct: 264 KCGELDMAGEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLS 323

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV- 221
            ++ AC     +  G  IHG+ +R     H  VA+S++  Y++ GRI  A ++FDC  + 
Sbjct: 324 ASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLG 383

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAM------REDGVGYDPVSYIAILTACSHGGLV 275
           +  A+WN +I GY   G    A+ +F  M       ED    D  ++ ++L AC   G  
Sbjct: 384 RGLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAP 443

Query: 276 EKGKKYFDEMQAD--SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
            +G +    M A   S     +    +VD+  + G +  A+++ + L
Sbjct: 444 REGAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERL 490


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 137/415 (33%), Positives = 234/415 (56%), Gaps = 3/415 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A+  F  I E +  SWN +++ F       + L++ ++M       N  T
Sbjct: 397 MYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYT 456

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             +VL  C     LR G ++HA I++ GL  D  ++  L DMYA+ GC   A  VF  + 
Sbjct: 457 YVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLK 516

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD  S+ +++ GY++T +  + +  F  M    ++    +   ++S C+++A++  G +
Sbjct: 517 ERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQ 576

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+   ++ + V+ +++D Y + G I  A  +F     +D  +WNT+I GY   G 
Sbjct: 577 LHSWAIKSGWNSSV-VSGALVDMYVKCGNIADAEMLFHESETRDQVAWNTIICGYSQHGH 635

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++ F+ M ++G   D ++++ +L+ACSH GL+ +G+KYF  + +   + PT  HYA
Sbjct: 636 GYKALDAFKQMVDEGKRPDGITFVGVLSACSHAGLLNEGRKYFKSLSSIYGITPTMEHYA 695

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+L +AG + +A  LI  +P+ PD++IW  +LGACRI+ N+E+   AAE LF L+P 
Sbjct: 696 CMVDILSKAGRLVEAESLINQMPLAPDSSIWRTILGACRIHRNIEIAERAAERLFELEPH 755

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
                ILLSN+YA+ G+W + ++VR ++     KK PGCSW++   ++  F+  D
Sbjct: 756 DASSSILLSNIYADLGRWSDVTRVRNILLDHGVKKEPGCSWIEINGQIHMFLSQD 810



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 147/302 (48%), Gaps = 12/302 (3%)

Query: 65  LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDE 123
           L  CA    LR G+E+HAR++R  L+ D FL ++L +MY KCG L  A+ VF+ +  RD 
Sbjct: 57  LQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDI 116

Query: 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGV 183
           V++  +I  ++   D  ++L +F+ M   G+  +  +    + AC+  +  K   ++HG 
Sbjct: 117 VAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQ 176

Query: 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
            ++ +     +V +S+++ YT  G +D A  +   LP +   SWN L+ GY   G+    
Sbjct: 177 VVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRV 236

Query: 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303
           + + E +   G      +   +L  C   GL + G+     +    ++   +  +C+V++
Sbjct: 237 MIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEM 296

Query: 304 LGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM------LKP 357
             R    E+A ++   +  EPD     A++ +C    ++   AW A  LF+      +KP
Sbjct: 297 YSRCLSAEEAYEVFIRID-EPDVVHCSAMI-SCFDRHDM---AWEALDLFVKMSGMGVKP 351

Query: 358 QH 359
            H
Sbjct: 352 NH 353



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 125/271 (46%), Gaps = 1/271 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++     EA  +F  I E ++V  +AM++ F ++ +  +AL L  +M      PN   
Sbjct: 296 MYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYI 355

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              +    +R       + +HA I++ G      + +A+ +MY K G +  A   F+ I 
Sbjct: 356 FVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIH 415

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D  S+N ++  +   S+C + L +F +M   G   +  +++  +  C +L  ++ G +
Sbjct: 416 EPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQ 475

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++  L     V+  ++D Y +SG    A  +F+ L  +D+ SW  ++ GY    E
Sbjct: 476 VHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEE 535

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS 270
            +  +  F +M  + +     +    L+ CS
Sbjct: 536 AEKVVEYFRSMLRENIRPSDATLAVSLSVCS 566



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 147/324 (45%), Gaps = 2/324 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +   + E++ VSWNA++  +A++    + + ++ ++    +  +  TL  VL  C  
Sbjct: 205 AETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCME 264

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
               + G+ +HA +I++GL  D  L + L +MY++C     A  VF  I   D V  + +
Sbjct: 265 LGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAM 324

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I  + +     E+L LF +M  +G+K +   F+G     +        + +H   ++   
Sbjct: 325 ISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGF 384

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
                V ++IL+ Y + G +  A   FD +   D+ SWNT++  +      +  + +F+ 
Sbjct: 385 AMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQ 444

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
           M  +G   +  +Y+++L  C+    +  G +    +    ++        +VD+  ++G 
Sbjct: 445 MACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGC 504

Query: 310 MEDAVKLIKNLPVEPDANIWGALL 333
              A  + + L  E DA  W  ++
Sbjct: 505 FTSACLVFEQLK-ERDAFSWTVIM 527



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 154/347 (44%), Gaps = 4/347 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K  R  +A  +F  +  ++IV+W AM++         +AL +   M      PN  T
Sbjct: 94  MYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFT 153

Query: 61  LTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNV-FNI 118
           L +VL AC+ G   +   ++H ++++  GL+ D ++ ++L + Y  CG L+ A+ V   +
Sbjct: 154 LASVLKACSGGSHSKFTHQVHGQVVKLNGLD-DPYVGSSLVEAYTSCGELDAAETVLLGL 212

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R +VS+N L+ GY++  D    + +  ++   G +    +    +  C  L   K G+
Sbjct: 213 PERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQ 272

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H   I++ L T   + + +++ Y+R    + A ++F  +   D    + +I  +    
Sbjct: 273 SVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHD 332

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
               A++LF  M   GV  +   ++ I    S  G     +     +        +    
Sbjct: 333 MAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGD 392

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
            ++++  + G ++DA  +  +L  EPD   W  +L A     N E G
Sbjct: 393 AILNMYVKVGAVQDAT-VTFDLIHEPDTFSWNTILSAFYSGSNCEQG 438



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 92/183 (50%), Gaps = 9/183 (4%)

Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
            A+  CA    +++G+E+H   +R  LH   F+ +S+L+ Y + GR+  A ++FD +P +
Sbjct: 55  AALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHR 114

Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282
           D  +W  +I  +   G+ D A+++F  M ++G+  +  +  ++L ACS G       K+ 
Sbjct: 115 DIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGG----SHSKFT 170

Query: 283 DEMQADSVKPTEMH----YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
            ++    VK   +      + +V+     G ++ A  ++  LP   D + W ALL     
Sbjct: 171 HQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVS-WNALLNGYAR 229

Query: 339 YGN 341
           +G+
Sbjct: 230 HGD 232


>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 148/424 (34%), Positives = 245/424 (57%), Gaps = 6/424 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K+    +A  LF  +  +   SWN+M+A +A      +AL L   M      PN++T+
Sbjct: 195 YSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITI 254

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
           T+V   CA+   L  GK +   I    L  ++ +  AL +MY KC  ++ A+  F+ +S 
Sbjct: 255 TSVFSICAKSGDLDTGKRVRDLIGEDDLQ-NVIVHTALMEMYVKCRAIDDARREFDRMSQ 313

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD V+++ +I GY+Q     ESL LF  M+    + + V+ +G ISACA L + +  ++I
Sbjct: 314 RDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQI 373

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
                 + L    ++ ++++D YTR G +  A  +F  +  K   +WN++I G  M G  
Sbjct: 374 GNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFA 433

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYAC 299
           + AI+L+E M E+GV  + ++++A+L AC+H GLV++G  +F+EM+ +  V P   H AC
Sbjct: 434 EDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCAC 493

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
           +VDLL ++G + +A K I ++ VEP+A IW  LL +CR + +VEL   A+  L  ++P +
Sbjct: 494 IVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAMEPDN 553

Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFT 419
              Y+LLSN+YA+AG W +A ++R+LM+S+  +K    SW++   EV  F+V D   T+ 
Sbjct: 554 SSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLDGEVHKFLVQD---TYH 610

Query: 420 PGPA 423
           P  A
Sbjct: 611 PRSA 614



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 163/410 (39%), Gaps = 82/410 (20%)

Query: 43  LQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDM 102
           LQ    M     +  S  +  V  +CA       G+++H   + +GL  D+F+  AL D 
Sbjct: 104 LQTFSSMHRKGAYVPSGCVPLVFKSCALTASSCQGRQVHCHALVRGLLGDVFVLTALVDF 163

Query: 103 YAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCS--------------------- 140
           YAK G +  A +VF+ +  +D +  N LI GYS+  D                       
Sbjct: 164 YAKNGDMESAVSVFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMI 223

Query: 141 ----------ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH 190
                     E+L+LF  M   G + + ++     S CA    +  GK +  +     L 
Sbjct: 224 ACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQ 283

Query: 191 THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
            ++ V  ++++ Y +   ID A + FD +  +D  +W+T+I GY   G    ++ LFE M
Sbjct: 284 -NVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERM 342

Query: 251 REDGVGYDPVSYIAILTACSHGG---LVE------------------------------- 276
           +      + V+ + +++AC+  G   LVE                               
Sbjct: 343 KATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHV 402

Query: 277 -KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGAL 332
            + +  F  M+   V    + +  M+  L   G  EDA+ L + +    V+P+   + AL
Sbjct: 403 GRARSVFSRMEQKGV----ITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVAL 458

Query: 333 LGACRIYGNVELG-----AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWD 377
           L AC   G V+ G         EHL   + +HC   + L  +    G W+
Sbjct: 459 LAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACIVDL--LCKSGGLWE 506



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 122/234 (52%), Gaps = 3/234 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A   F  ++++++V+W+ M+A +AQN   L++L+L   M   +  PN VT
Sbjct: 294 MYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVT 353

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L  V+ ACA+       ++I      + L    +L +AL DMY +CG +  A++VF+ + 
Sbjct: 354 LVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRME 413

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  +++N +I G +      +++SL+ +M   G++ + ++F+  ++AC +   + QG  
Sbjct: 414 QKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMA 473

Query: 180 IHGVTIRKHL-HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
                 R+HL    +     I+D   +SG +  A K    + V+ +A  W TL+
Sbjct: 474 FFEEMKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLL 527



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 6/234 (2%)

Query: 93  LFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSY-NILIVGYSQTSDCSESLSLFSEMRL 151
           L  T     +++       A+N+F+   R   +  +  +   S+ S   + L  FS M  
Sbjct: 53  LLKTRPFHAIFSDATTSRAARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHR 112

Query: 152 LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211
            G             +CA  A+  QG+++H   + + L   +FV  +++DFY ++G ++ 
Sbjct: 113 KGAYVPSGCVPLVFKSCALTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMES 172

Query: 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271
           A  +FD +PVKD    N LI GY   G+VD A  LF+ M          S+ +++   +H
Sbjct: 173 AVSVFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGMER----RTSASWNSMIACYAH 228

Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD 325
           GG   +    FD M ++  +P  +    +  +  ++G + D  K +++L  E D
Sbjct: 229 GGEFREALTLFDRMLSEGARPNAITITSVFSICAKSGDL-DTGKRVRDLIGEDD 281


>gi|356497951|ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial-like [Glycine max]
          Length = 828

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 147/413 (35%), Positives = 235/413 (56%), Gaps = 2/413 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA   + +    L   I   ++VSWN +++ +A+  L  +A+ L   M      P+S +L
Sbjct: 350 YAACWKISSCEKLLCLIGNSSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSL 409

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            + + ACA    +R G++IH  + ++G   D F+ N+L DMY+KCG ++LA  +F+ I  
Sbjct: 410 ASSISACAGASSVRFGQQIHGHVTKRGFA-DEFVQNSLMDMYSKCGFVDLAYTIFDKIWE 468

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +  V++N +I G+SQ     E+L LF EM    M  + V+F+ AI AC+N   + +GK I
Sbjct: 469 KSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGKWI 528

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   +   +   L++  +++D Y + G +  A  +F+ +P K   SW+ +I  YG+ G++
Sbjct: 529 HHKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNSMPEKSVVSWSAMIAAYGIHGQI 588

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A  LF  M E  +  + V+++ IL+AC H G VE+GK YF+ M+   + P   H+A +
Sbjct: 589 TAATTLFTKMVESHIKPNEVTFMNILSACRHAGSVEEGKFYFNSMRDYGIVPNAEHFASI 648

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           VDLL RAG ++ A ++IK+     DA+IWGALL  CRI+G ++L     + L  ++    
Sbjct: 649 VDLLSRAGDIDGAYEIIKSTCQHIDASIWGALLNGCRIHGRMDLIHNIHKELREIRTNDT 708

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           GYY LLSN+YAE G W E+ KVR  M+    KK PG S ++  D++  F   D
Sbjct: 709 GYYTLLSNIYAEGGNWYESRKVRSRMEGMGLKKVPGYSSIEIDDKIYRFGAGD 761



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 161/311 (51%), Gaps = 17/311 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F  I EK+IV+WN M+  F+QN + ++AL+L  EM  +    N VT
Sbjct: 449 MYSKCGFVDLAYTIFDKIWEKSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMDINEVT 508

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             + + AC+   +L  GK IH +++  G+  DL++  AL DMYAKCG L  AQ VFN + 
Sbjct: 509 FLSAIQACSNSGYLLKGKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNSMP 568

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +  VS++ +I  Y      + + +LF++M    +K + V+FM  +SAC +  ++++GK 
Sbjct: 569 EKSVVSWSAMIAAYGIHGQITAATTLFTKMVESHIKPNEVTFMNILSACRHAGSVEEGKF 628

Query: 180 IHGVTIRKHLHTHLFVAN-----SILDFYTRSGRIDLANKIFD--CLPVKDSASWNTLIL 232
                    +  +  V N     SI+D  +R+G ID A +I    C  + D++ W  L+ 
Sbjct: 629 YF-----NSMRDYGIVPNAEHFASIVDLLSRAGDIDGAYEIIKSTCQHI-DASIWGALLN 682

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC-SHGGLVEKGKKYFDEMQADSVK 291
           G  + G +D   N+ + +RE  +  +   Y  +L+   + GG   + +K    M+   +K
Sbjct: 683 GCRIHGRMDLIHNIHKELRE--IRTNDTGYYTLLSNIYAEGGNWYESRKVRSRMEGMGLK 740

Query: 292 PTEMHYACMVD 302
               + +  +D
Sbjct: 741 KVPGYSSIEID 751



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 194/427 (45%), Gaps = 40/427 (9%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY +    ++A  +F  I  +++VSW+++VA + +N    + L+++R M      P+SVT
Sbjct: 146 MYGELGCLSDARKVFDEIRVRDLVSWSSVVACYVENGRPREGLEMLRWMVSEGVGPDSVT 205

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + +V  AC +   LR  K +H  +IRK +  D  L N+L  MY +C  L  A+ +F ++S
Sbjct: 206 MLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDASLRNSLIVMYGQCSYLRGAKGMFESVS 265

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
                 +  +I   +Q     E++  F +M+   ++ + V+ +  +  CA L  +K+GK 
Sbjct: 266 DPSTACWTSMISSCNQNGCFEEAIDAFKKMQESEVEVNAVTMISVLCCCARLGWLKEGKS 325

Query: 180 IHGVTIRKHLH-THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +H   +R+ +    L +  +++DFY    +I    K+   +      SWNTLI  Y   G
Sbjct: 326 VHCFILRREMDGADLDLGPALMDFYAACWKISSCEKLLCLIGNSSVVSWNTLISIYAREG 385

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQA 287
             + A+ LF  M E G+  D  S  + ++AC+           HG + ++G  + DE   
Sbjct: 386 LNEEAMVLFVCMLEKGLMPDSFSLASSISACAGASSVRFGQQIHGHVTKRG--FADEFVQ 443

Query: 288 DSV---------------------KPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVE 323
           +S+                     + + + + CM+    + G+  +A+KL   +    ++
Sbjct: 444 NSLMDMYSKCGFVDLAYTIFDKIWEKSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMD 503

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY-ILLSNMYAEAGKWDEASKV 382
            +   + + + AC   G +  G W    L +   Q   Y    L +MYA+ G    A  V
Sbjct: 504 INEVTFLSAIQACSNSGYLLKGKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGV 563

Query: 383 RELMKSR 389
              M  +
Sbjct: 564 FNSMPEK 570



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 1/207 (0%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           L  G+++H RI++ GL  D  +  +L  MY + GCL+ A+ VF+ I  RD VS++ ++  
Sbjct: 118 LVVGRKVHGRIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVAC 177

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y +     E L +   M   G+  D V+ +    AC  +  ++  K +HG  IRK +   
Sbjct: 178 YVENGRPREGLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGD 237

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
             + NS++  Y +   +  A  +F+ +    +A W ++I      G  + AI+ F+ M+E
Sbjct: 238 ASLRNSLIVMYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAIDAFKKMQE 297

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGK 279
             V  + V+ I++L  C+  G +++GK
Sbjct: 298 SEVEVNAVTMISVLCCCARLGWLKEGK 324



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 126/292 (43%), Gaps = 15/292 (5%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           +T  +P       LR   ++HA ++  GL+ D   +  L + YA+ G L+ ++ VF    
Sbjct: 1   MTLYMPLFRSCSTLRSLSQLHAHLVVTGLHSDPLASTKLLESYARMGSLHSSRLVFETHP 60

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLG---MKHDVVSFMGAISACANLAAIKQ 176
             D   + +LI  Y       + +SL+      G    ++    +   I A + +  +  
Sbjct: 61  SPDSFMFGVLIKCYLWHHLFDQVVSLYHHHIQKGSRLTQNCTFLYPSVIKAISVVGGLVV 120

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+++HG  ++  L T   +  S+L  Y   G +  A K+FD + V+D  SW++++  Y  
Sbjct: 121 GRKVHGRIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACYVE 180

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF-----DEMQADSVK 291
            G     + +   M  +GVG D V+ +++  AC   G +   K         EM  D+  
Sbjct: 181 NGRPREGLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDASL 240

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
                   ++ + G+   +  A  + +++  +P    W +++ +C   G  E
Sbjct: 241 RNS-----LIVMYGQCSYLRGAKGMFESVS-DPSTACWTSMISSCNQNGCFE 286


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 244/423 (57%), Gaps = 10/423 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PN 57
           MYA   +  +A  +F  + +  K +  WNAM+  +AQ  ++ +AL+L   M     F P 
Sbjct: 316 MYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPC 375

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             T+ +VLPACAR       + +H  ++++G+  + F+ NAL DMYA+ G  ++A+ +F 
Sbjct: 376 ETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFA 435

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL---GMKHDVVSFMGAISACANLAA 173
            +   D VS+N LI G       +++  L  EM+ L   G+  + ++ M  +  CA LAA
Sbjct: 436 MVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAA 495

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
             +GKEIHG  +R  L T + V ++++D Y + G + L+  +FD LP +++ +WN LI+ 
Sbjct: 496 PARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMA 555

Query: 234 YGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVK 291
           YGM G    A  LF+ M   G    + V+++A L ACSH G+V++G + F  M+ D  V+
Sbjct: 556 YGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVE 615

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPV-EPDANIWGALLGACRIYGNVELGAWAAE 350
           PT    AC+VD+LGRAG +++A  ++ ++   E   + W  +LGACR++ NV LG  A E
Sbjct: 616 PTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGE 675

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
            L  L+P+   +Y+LL N+Y+ AG+W  A++VR  M+ R   K PGCSW++    +  F+
Sbjct: 676 RLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFM 735

Query: 411 VND 413
             +
Sbjct: 736 AGE 738



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 171/350 (48%), Gaps = 11/350 (3%)

Query: 1   MYAKSSRPAEASYLFHNI--AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MYA+    A+A  LF        ++V+WN MV+   Q+ +  +A+Q + +M      P+ 
Sbjct: 212 MYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDG 271

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           VT  + LPAC+R   L  G+E+HA +I+   L  + F+ +AL DMYA    +  A+ VF+
Sbjct: 272 VTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFD 331

Query: 118 I---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL-LGMKHDVVSFMGAISACANLAA 173
           +   S +    +N +I GY+Q     E+L LF+ M    G      +    + ACA   A
Sbjct: 332 MVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEA 391

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
               + +HG  +++ +  + FV N+++D Y R G+ D+A +IF  + + D  SWNTLI G
Sbjct: 392 FAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITG 451

Query: 234 YGMLGEVDTAINLFEAMR---EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
             + G V  A  L   M+   E GV  + ++ + +L  C+      +GK+        ++
Sbjct: 452 CVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHAL 511

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
                  + +VD+  + G +  +  +   LP   +   W  L+ A  ++G
Sbjct: 512 DTDVAVGSALVDMYAKCGCLALSRAVFDRLP-RRNTITWNVLIMAYGMHG 560



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 150/362 (41%), Gaps = 56/362 (15%)

Query: 75  RPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVFNI---SFRDEVSYNIL 129
           R  + IHA  +R+GL       + NAL   YA+CG L  A  VF     S  D VS+N L
Sbjct: 74  RSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSL 133

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL----AAIKQGKEIHGVTI 185
           I           +L+    M   G      + +  + A ++L    AA++ G+E H   +
Sbjct: 134 ISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFAL 193

Query: 186 RKH-LHTH-LFVANSILDFYTRSGRIDLANKIF-DCLPVK-DSASWNTLILGYGMLGEVD 241
           +   LH H  F  N++L  Y R G +  A ++F    P + D  +WNT++      G  D
Sbjct: 194 KNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFD 253

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF------DEMQADSVKPTEM 295
            A+     M   GV  D V++ + L ACS   L++ G++        DE+ A+S   + +
Sbjct: 254 EAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASAL 313

Query: 296 --HYA--------------------------CMVDLLGRAGLMEDAVKLIKNLPVE---- 323
              YA                           M+    +AG+ E+A++L   +  E    
Sbjct: 314 VDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFV 373

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDEAS 380
           P      ++L AC    +       A H +++K    G   +   L +MYA  GK D A 
Sbjct: 374 PCETTMASVLPAC--ARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVAR 431

Query: 381 KV 382
           ++
Sbjct: 432 RI 433


>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1347

 Score =  273 bits (699), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 139/410 (33%), Positives = 242/410 (59%), Gaps = 3/410 (0%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            +YA+  R  +   + H + ++NIV WN+ ++ +A   + ++AL L R+M      P+S T
Sbjct: 906  LYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFT 965

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            L +++ AC     +R GK+IH  +IR  ++ D F+ N++ DMY+K G +NLA  VF+ I 
Sbjct: 966  LASIISACENTGLVRLGKQIHGHVIRTDVS-DEFVQNSVIDMYSKSGFVNLACTVFDQIK 1024

Query: 120  FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             R  V++N ++ G+SQ  +  E+++LF  M    ++ + V+F+  I AC+++ ++++G+ 
Sbjct: 1025 HRSIVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRW 1084

Query: 180  IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            +H   I   +   LF   +++D Y + G ++ A  +F  +  +   SW+++I  YGM G 
Sbjct: 1085 VHHKLIVCGIKD-LFTDTALIDMYAKCGDLNTAETVFRAMSNRSIVSWSSMINAYGMHGR 1143

Query: 240  VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + +AI+ F  M E G   + V ++ +L+AC H G VE+GK YF+ M+   V P   H+AC
Sbjct: 1144 IGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLMKLFGVSPNSEHFAC 1203

Query: 300  MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
             +DLL R+G +++A + IK +P   DA++WG+L+  CRI+  +++       +  +    
Sbjct: 1204 FIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDISDIVTDD 1263

Query: 360  CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
             GYY LLSN+YAE G+W+E  ++R  MKS   KK PG S ++   +V  F
Sbjct: 1264 TGYYTLLSNIYAEEGEWEEFRRMRSAMKSLNLKKVPGYSAIEIDKKVFRF 1313



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 199/425 (46%), Gaps = 37/425 (8%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MY ++   ++A  +F  +  +++V+W+ +V++  +N   LKAL++ + M      P++VT
Sbjct: 703  MYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENCEVLKALRMFKCMVDDGVEPDAVT 762

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            + +V+  CA    LR  + +H +I RK  +FD  L N+L  MY+KCG L  ++ +F  I+
Sbjct: 763  MISVVEGCAELGCLRIARSVHGQITRKMFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIA 822

Query: 120  FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             ++ VS+  +I  Y++     ++L  FSEM   G++ ++V+    +S+C     I++GK 
Sbjct: 823  KKNAVSWTAMISSYNRGEFSEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKS 882

Query: 180  IHGVTIRKHLH-THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +HG  IR+ L   +  ++ ++++ Y   GR+     I   +  ++   WN+ I  Y   G
Sbjct: 883  VHGFAIRRELDPNYESLSPALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRG 942

Query: 239  EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
             V  A+ LF  M    +  D  +  +I++AC + GLV  GK+    +    V   E    
Sbjct: 943  MVIEALCLFRQMVTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIRTDVS-DEFVQN 1001

Query: 299  CMVDLLGRAGLMEDAVKLIKNLP----------------------------------VEP 324
             ++D+  ++G +  A  +   +                                   +E 
Sbjct: 1002 SVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEI 1061

Query: 325  DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
            +   + A++ AC   G++E G W    L +   +       L +MYA+ G  + A  V  
Sbjct: 1062 NKVTFLAVIQACSSIGSLEKGRWVHHKLIVCGIKDLFTDTALIDMYAKCGDLNTAETVFR 1121

Query: 385  LMKSR 389
             M +R
Sbjct: 1122 AMSNR 1126



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 170/365 (46%), Gaps = 39/365 (10%)

Query: 63   NVLPACA--RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +VL ACA  R H L  G+++H RII+ G++ D  +  +L  MY + G L+ A+ VF+ + 
Sbjct: 663  SVLRACAGSREH-LSVGRKVHGRIIKSGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMP 721

Query: 120  FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             RD V+++ L+    +  +  ++L +F  M   G++ D V+ +  +  CA L  ++  + 
Sbjct: 722  VRDLVAWSTLVSSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARS 781

Query: 180  IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            +HG   RK       + NS+L  Y++ G +  + KIF+ +  K++ SW  +I  Y     
Sbjct: 782  VHGQITRKMFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEF 841

Query: 240  VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD-------EMQADSVKP 292
             + A+  F  M + G+  + V+  +IL++C   GL+ +GK           +   +S+ P
Sbjct: 842  SEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSP 901

Query: 293  --TEMHYAC-----------------------MVDLLGRAGLMEDAVKLIKNL---PVEP 324
               E++  C                        + L    G++ +A+ L + +    ++P
Sbjct: 902  ALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIKP 961

Query: 325  DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
            D+    +++ AC   G V LG     H+             + +MY+++G  + A  V +
Sbjct: 962  DSFTLASIISACENTGLVRLGKQIHGHVIRTDVSDEFVQNSVIDMYSKSGFVNLACTVFD 1021

Query: 385  LMKSR 389
             +K R
Sbjct: 1022 QIKHR 1026


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  273 bits (699), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 244/423 (57%), Gaps = 10/423 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PN 57
           MYA   +  +A  +F  + +  K +  WNAM+  +AQ  ++ +AL+L   M     F P 
Sbjct: 316 MYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPC 375

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             T+ +VLPACAR       + +H  ++++G+  + F+ NAL DMYA+ G  ++A+ +F 
Sbjct: 376 ETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFA 435

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL---GMKHDVVSFMGAISACANLAA 173
            +   D VS+N LI G       +++  L  EM+ L   G+  + ++ M  +  CA LAA
Sbjct: 436 MVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAA 495

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
             +GKEIHG  +R  L T + V ++++D Y + G + L+  +FD LP +++ +WN LI+ 
Sbjct: 496 PARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMA 555

Query: 234 YGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVK 291
           YGM G    A  LF+ M   G    + V+++A L ACSH G+V++G + F  M+ D  V+
Sbjct: 556 YGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVE 615

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPV-EPDANIWGALLGACRIYGNVELGAWAAE 350
           PT    AC+VD+LGRAG +++A  ++ ++   E   + W  +LGACR++ NV LG  A E
Sbjct: 616 PTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGE 675

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
            L  L+P+   +Y+LL N+Y+ AG+W  A++VR  M+ R   K PGCSW++    +  F+
Sbjct: 676 RLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFM 735

Query: 411 VND 413
             +
Sbjct: 736 AGE 738



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 171/350 (48%), Gaps = 11/350 (3%)

Query: 1   MYAKSSRPAEASYLFHNI--AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MYA+    A+A  LF        ++V+WN MV+   Q+ +  +A+Q + +M      P+ 
Sbjct: 212 MYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDG 271

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           VT  + LPAC+R   L  G+E+HA +I+   L  + F+ +AL DMYA    +  A+ VF+
Sbjct: 272 VTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFD 331

Query: 118 I---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL-LGMKHDVVSFMGAISACANLAA 173
           +   S +    +N +I GY+Q     E+L LF+ M    G      +    + ACA   A
Sbjct: 332 MVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEA 391

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
               + +HG  +++ +  + FV N+++D Y R G+ D+A +IF  + + D  SWNTLI G
Sbjct: 392 FAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITG 451

Query: 234 YGMLGEVDTAINLFEAMR---EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
             + G V  A  L   M+   E GV  + ++ + +L  C+      +GK+        ++
Sbjct: 452 CVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHAL 511

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
                  + +VD+  + G +  +  +   LP   +   W  L+ A  ++G
Sbjct: 512 DTDVAVGSALVDMYAKCGCLALSRAVFDRLP-RRNTITWNVLIMAYGMHG 560



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 150/362 (41%), Gaps = 56/362 (15%)

Query: 75  RPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVFNI---SFRDEVSYNIL 129
           R  + IHA  +R+GL       + NAL   YA+CG L  A  VF     S  D VS+N L
Sbjct: 74  RSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSL 133

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL----AAIKQGKEIHGVTI 185
           I           +L+    M   G      + +  + A ++L    AA++ G+E H   +
Sbjct: 134 ISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFAL 193

Query: 186 RKH-LHTH-LFVANSILDFYTRSGRIDLANKIF-DCLPVK-DSASWNTLILGYGMLGEVD 241
           +   LH H  F  N++L  Y R G +  A ++F    P + D  +WNT++      G  D
Sbjct: 194 KNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFD 253

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF------DEMQADSVKPTEM 295
            A+     M   GV  D V++ + L ACS   L++ G++        DE+ A+S   + +
Sbjct: 254 EAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASAL 313

Query: 296 --HYA--------------------------CMVDLLGRAGLMEDAVKLIKNLPVE---- 323
              YA                           M+    +AG+ E+A++L   +  E    
Sbjct: 314 VDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFV 373

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDEAS 380
           P      ++L AC    +       A H +++K    G   +   L +MYA  GK D A 
Sbjct: 374 PCETTMASVLPAC--ARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVAR 431

Query: 381 KV 382
           ++
Sbjct: 432 RI 433


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  273 bits (699), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 244/423 (57%), Gaps = 10/423 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PN 57
           MYA   +  +A  +F  + +  K +  WNAM+  +AQ  ++ +AL+L   M     F P 
Sbjct: 318 MYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPC 377

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             T+ +VLPACAR       + +H  ++++G+  + F+ NAL DMYA+ G  ++A+ +F 
Sbjct: 378 ETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFA 437

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL---GMKHDVVSFMGAISACANLAA 173
            +   D VS+N LI G       +++  L  EM+ L   G+  + ++ M  +  CA LAA
Sbjct: 438 MVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAA 497

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
             +GKEIHG  +R  L T + V ++++D Y + G + L+  +FD LP +++ +WN LI+ 
Sbjct: 498 PARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMA 557

Query: 234 YGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVK 291
           YGM G    A  LF+ M   G    + V+++A L ACSH G+V++G + F  M+ D  V+
Sbjct: 558 YGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVE 617

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPV-EPDANIWGALLGACRIYGNVELGAWAAE 350
           PT    AC+VD+LGRAG +++A  ++ ++   E   + W  +LGACR++ NV LG  A E
Sbjct: 618 PTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGE 677

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
            L  L+P+   +Y+LL N+Y+ AG+W  A++VR  M+ R   K PGCSW++    +  F+
Sbjct: 678 RLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFM 737

Query: 411 VND 413
             +
Sbjct: 738 AGE 740



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 171/350 (48%), Gaps = 11/350 (3%)

Query: 1   MYAKSSRPAEASYLFHNI--AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MYA+    A+A  LF        ++V+WN MV+   Q+ +  +A+Q + +M      P+ 
Sbjct: 214 MYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDG 273

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           VT  + LPAC+R   L  G+E+HA +I+   L  + F+ +AL DMYA    +  A+ VF+
Sbjct: 274 VTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFD 333

Query: 118 I---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL-LGMKHDVVSFMGAISACANLAA 173
           +   S +    +N +I GY+Q     E+L LF+ M    G      +    + ACA   A
Sbjct: 334 MVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEA 393

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
               + +HG  +++ +  + FV N+++D Y R G+ D+A +IF  + + D  SWNTLI G
Sbjct: 394 FAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITG 453

Query: 234 YGMLGEVDTAINLFEAMR---EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
             + G V  A  L   M+   E GV  + ++ + +L  C+      +GK+        ++
Sbjct: 454 CVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHAL 513

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
                  + +VD+  + G +  +  +   LP   +   W  L+ A  ++G
Sbjct: 514 DTDVAVGSALVDMYAKCGCLALSRAVFDRLP-RRNTITWNVLIMAYGMHG 562



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 150/362 (41%), Gaps = 56/362 (15%)

Query: 75  RPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVFNI---SFRDEVSYNIL 129
           R  + IHA  +R+GL       + NAL   YA+CG L  A  VF     S  D VS+N L
Sbjct: 76  RSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSL 135

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL----AAIKQGKEIHGVTI 185
           I           +L+    M   G      + +  + A ++L    AA++ G+E H   +
Sbjct: 136 ISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFAL 195

Query: 186 RKH-LHTH-LFVANSILDFYTRSGRIDLANKIF-DCLPVK-DSASWNTLILGYGMLGEVD 241
           +   LH H  F  N++L  Y R G +  A ++F    P + D  +WNT++      G  D
Sbjct: 196 KNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFD 255

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF------DEMQADSVKPTEM 295
            A+     M   GV  D V++ + L ACS   L++ G++        DE+ A+S   + +
Sbjct: 256 EAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASAL 315

Query: 296 --HYA--------------------------CMVDLLGRAGLMEDAVKLIKNLPVE---- 323
              YA                           M+    +AG+ E+A++L   +  E    
Sbjct: 316 VDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFV 375

Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---LSNMYAEAGKWDEAS 380
           P      ++L AC    +       A H +++K    G   +   L +MYA  GK D A 
Sbjct: 376 PCETTMASVLPAC--ARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVAR 433

Query: 381 KV 382
           ++
Sbjct: 434 RI 435


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  273 bits (699), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 244/423 (57%), Gaps = 10/423 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PN 57
           MYA   +  +A  +F  + +  K +  WNAM+  +AQ  ++ +AL+L   M     F P 
Sbjct: 164 MYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPC 223

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             T+ +VLPACAR       + +H  ++++G+  + F+ NAL DMYA+ G  ++A+ +F 
Sbjct: 224 ETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFA 283

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL---GMKHDVVSFMGAISACANLAA 173
            +   D VS+N LI G       +++  L  EM+ L   G+  + ++ M  +  CA LAA
Sbjct: 284 MVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAA 343

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
             +GKEIHG  +R  L T + V ++++D Y + G + L+  +FD LP +++ +WN LI+ 
Sbjct: 344 PARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMA 403

Query: 234 YGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVK 291
           YGM G    A  LF+ M   G    + V+++A L ACSH G+V++G + F  M+ D  V+
Sbjct: 404 YGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVE 463

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPV-EPDANIWGALLGACRIYGNVELGAWAAE 350
           PT    AC+VD+LGRAG +++A  ++ ++   E   + W  +LGACR++ NV LG  A E
Sbjct: 464 PTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGE 523

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
            L  L+P+   +Y+LL N+Y+ AG+W  A++VR  M+ R   K PGCSW++    +  F+
Sbjct: 524 RLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFM 583

Query: 411 VND 413
             +
Sbjct: 584 AGE 586



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 171/350 (48%), Gaps = 11/350 (3%)

Query: 1   MYAKSSRPAEASYLFHNI--AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MYA+    A+A  LF        ++V+WN MV+   Q+ +  +A+Q + +M      P+ 
Sbjct: 60  MYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDG 119

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           VT  + LPAC+R   L  G+E+HA +I+   L  + F+ +AL DMYA    +  A+ VF+
Sbjct: 120 VTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFD 179

Query: 118 I---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL-LGMKHDVVSFMGAISACANLAA 173
           +   S +    +N +I GY+Q     E+L LF+ M    G      +    + ACA   A
Sbjct: 180 MVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEA 239

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
               + +HG  +++ +  + FV N+++D Y R G+ D+A +IF  + + D  SWNTLI G
Sbjct: 240 FAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITG 299

Query: 234 YGMLGEVDTAINLFEAMR---EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
             + G V  A  L   M+   E GV  + ++ + +L  C+      +GK+        ++
Sbjct: 300 CVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHAL 359

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
                  + +VD+  + G +  +  +   LP   +   W  L+ A  ++G
Sbjct: 360 DTDVAVGSALVDMYAKCGCLALSRAVFDRLP-RRNTITWNVLIMAYGMHG 408



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 145/311 (46%), Gaps = 38/311 (12%)

Query: 57  NSVTLTNVLPAC----ARGHFLRPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLN 110
            S TL +VL A     A    +R G+E HA  ++ GL      F  NAL  MYA+ G + 
Sbjct: 9   TSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVA 68

Query: 111 LAQNVF---NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
            AQ +F        D V++N ++    Q+    E++    +M  LG++ D V+F  A+ A
Sbjct: 69  DAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPA 128

Query: 168 CANLAAIKQGKEIHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP--VKDS 224
           C+ L  +  G+E+H   I+   L  + FVA++++D Y    ++  A ++FD +P   K  
Sbjct: 129 CSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQL 188

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP--VSYIAILTACS-----------H 271
             WN +I GY   G  + A+ LF  M E   G+ P   +  ++L AC+           H
Sbjct: 189 GMWNAMICGYAQAGMDEEALRLFARM-EAEAGFVPCETTMASVLPACARSEAFAGKEAVH 247

Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
           G +V++G      +Q             ++D+  R G  + A ++   + + PD   W  
Sbjct: 248 GYVVKRGMAGNRFVQ-----------NALMDMYARLGKTDVARRIFAMVDL-PDVVSWNT 295

Query: 332 LLGACRIYGNV 342
           L+  C + G+V
Sbjct: 296 LITGCVVQGHV 306


>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
          Length = 746

 Score =  273 bits (699), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 149/417 (35%), Positives = 244/417 (58%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MY+    P  A  +F  I  +++VSWNAM+  + +  +  +  ++ R+M       PN V
Sbjct: 196 MYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVV 255

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T+  VL AC     L  G+ +        +  D  + +AL  MY KCG +  A+ VF+ I
Sbjct: 256 TVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTI 315

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D V++N +I GY+Q    +E++SLF  MR+ GM+ D ++  G +SAC+ + A++ G 
Sbjct: 316 IDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGS 375

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+ G   R+ L+++++V  +++D Y + G +D A ++F  +P K+ ASWN LI G    G
Sbjct: 376 ELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNG 435

Query: 239 EVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
             D AI  F+ MR E+G+  D +++I +L+AC H GLV+ GK++F+ +  +  + P   H
Sbjct: 436 RGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEH 495

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y+CMVDLL R+G +E+A   I+ +P + DA + GALL ACR   NVE+G      +  L+
Sbjct: 496 YSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLE 555

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P +   Y++ S +YA + + D+++K+R LM+ R   K PGCSWV+   +V +F   D
Sbjct: 556 PTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEVSGKVLEFYAGD 612



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 156/334 (46%), Gaps = 7/334 (2%)

Query: 25  SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARI 84
           S+N  +  FA +R    +L+L   M      P+S TL  +L A AR       +  HA +
Sbjct: 120 SYNVAIRFFASSRPH-TSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALL 178

Query: 85  IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESL 143
            + GLN      ++L  MY+       A+ VF+ I  RD VS+N ++  Y +     E  
Sbjct: 179 GKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVG 238

Query: 144 SLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
            +F +M   G +  +VV+    ++AC +   +  G+ +   +    +     V +++L  
Sbjct: 239 RMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGM 298

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y + G I  A ++FD +  KD  +WN +I GY   G  + AI+LF +MR  G+  D ++ 
Sbjct: 299 YEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITL 358

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
             +L+ACS  G +E G +         +         +VD+  + G ++ A+++ + +P 
Sbjct: 359 AGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPC 418

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           +  A+ W AL+      G    G  A +H  +++
Sbjct: 419 KNVAS-WNALICGLAFNGR---GDEAIQHFQLMR 448



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 122/295 (41%), Gaps = 39/295 (13%)

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           SYN+ I  ++ +S    SL LF  M    ++ D  +    + A A   A    +  H + 
Sbjct: 120 SYNVAIRFFA-SSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALL 178

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
            +  L+ H    +S++  Y+       A K+FD +P +D  SWN ++  YG +G      
Sbjct: 179 GKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVG 238

Query: 245 NLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGK-----KYFDEMQADSVKPTE---M 295
            +F  M ++G V  + V+   +L AC   G +  G+      +   M+ DS+  +    M
Sbjct: 239 RMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGM 298

Query: 296 HYAC-----------------------MVDLLGRAGLMEDAVKLIKNLPV---EPDANIW 329
           +  C                       M+    + G+  +A+ L  ++ +    PD    
Sbjct: 299 YEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITL 358

Query: 330 GALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWDEASKV 382
             +L AC   G +ELG+   +     +  +   Y+   L +MYA+ G  D+A +V
Sbjct: 359 AGVLSACSAVGALELGS-ELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEV 412


>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
          Length = 746

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/417 (35%), Positives = 245/417 (58%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MY+    P  A  +F  I  +++VSWNAM+  + +  +  +  ++ R+M       PN+V
Sbjct: 196 MYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNAV 255

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T+  VL AC     L  G+ +        +  D  + +AL  MY KCG +  A+ VF+ I
Sbjct: 256 TVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTI 315

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D V++N +I GY+Q    +E++SLF  MR+ GM+ D ++  G +SAC+ + A++ G 
Sbjct: 316 IDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGS 375

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+ G   R+ L+++++V  +++D Y + G +D A ++F  +P K+ ASWN LI G    G
Sbjct: 376 ELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNG 435

Query: 239 EVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
             D AI  F+ MR E+G+  D +++I +L+AC H GLV+ GK++F+ +  +  + P   H
Sbjct: 436 RGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEH 495

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y+CMVDLL R+G +E+A   I+ +P + DA + GALL ACR   NVE+G      +  L+
Sbjct: 496 YSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLE 555

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P +   Y++ S +YA + + D+++K+R LM+ R   K PGCSWV+   +V +F   D
Sbjct: 556 PTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEVSGKVLEFYAGD 612



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 155/334 (46%), Gaps = 7/334 (2%)

Query: 25  SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARI 84
           S+N  +  FA +R    +L+L   M      P+S TL  +L A AR       +  HA +
Sbjct: 120 SYNVAIRFFASSRPH-TSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALL 178

Query: 85  IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESL 143
            + GLN      ++L  MY+       A+ VF+ I  RD VS+N ++  Y +     E  
Sbjct: 179 GKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVG 238

Query: 144 SLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
            +F +M   G +  + V+    ++AC +   +  G+ +   +    +     V +++L  
Sbjct: 239 RMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGM 298

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y + G I  A ++FD +  KD  +WN +I GY   G  + AI+LF +MR  G+  D ++ 
Sbjct: 299 YEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITL 358

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
             +L+ACS  G +E G +         +         +VD+  + G ++ A+++ + +P 
Sbjct: 359 AGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPC 418

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           +  A+ W AL+      G    G  A +H  +++
Sbjct: 419 KNVAS-WNALICGLAFNGR---GDEAIQHFQLMR 448



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 122/295 (41%), Gaps = 39/295 (13%)

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           SYN+ I  ++ +S    SL LF  M    ++ D  +    + A A   A    +  H + 
Sbjct: 120 SYNVAIRFFA-SSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALL 178

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
            +  L+ H    +S++  Y+       A K+FD +P +D  SWN ++  YG +G      
Sbjct: 179 GKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVG 238

Query: 245 NLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGK-----KYFDEMQADSVKPTE---M 295
            +F  M ++G V  + V+   +L AC   G +  G+      +   M+ DS+  +    M
Sbjct: 239 RMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGM 298

Query: 296 HYAC-----------------------MVDLLGRAGLMEDAVKLIKNLPV---EPDANIW 329
           +  C                       M+    + G+  +A+ L  ++ +    PD    
Sbjct: 299 YEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITL 358

Query: 330 GALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWDEASKV 382
             +L AC   G +ELG+   +     +  +   Y+   L +MYA+ G  D+A +V
Sbjct: 359 AGVLSACSAVGALELGS-ELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEV 412


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 147/408 (36%), Positives = 240/408 (58%), Gaps = 4/408 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     EA  +F+ + ++++VSW  M+  +  N     AL L + M   +  PN VT
Sbjct: 268 MYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVT 327

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L +VL ACA  + L+ G+ +H   IR+ L  ++ +  AL DMYAKC  +NL+  VF+ + 
Sbjct: 328 LASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTS 387

Query: 121 RDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           +   + +N +I G        +++ LF +M +  +  +  +    + A A L  ++Q + 
Sbjct: 388 KQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARN 447

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS--ASWNTLILGYGML 237
           +HG  IR    + + VA  ++D Y++ G ++ A+ IF+ +P KD    +W+ +I GYGM 
Sbjct: 448 MHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMH 507

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-H 296
           G  +TAI+LF+ M + GV  + +++ +IL ACSH GLV++G   F  M  D+       H
Sbjct: 508 GHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDH 567

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y C++DLLGRAG +E+A +LI+ +   P+  +WGALLG+C I+ NVELG  AA+ LF L+
Sbjct: 568 YTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELE 627

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRD 404
           P + G Y+LL+N+Y+  G+W +A  VR +M +   +K P  S ++ R+
Sbjct: 628 PGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEVRN 675



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 174/356 (48%), Gaps = 24/356 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY        A  +F  + E+ +VSWN M+  + +N    +AL +   M      P+  T
Sbjct: 167 MYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCAT 226

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + +VLP C+    L  G+ +HA +  K L  D+ + N+L DMYAKCG ++ AQ +F  + 
Sbjct: 227 VVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMD 286

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  ++ GY    D   +L L   M+   +K + V+    +SACA+L ++K G+ 
Sbjct: 287 KRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRC 346

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  IR+ L + + V  +++D Y +   ++L+ ++F     + +A WN +I G    G 
Sbjct: 347 LHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGL 406

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQAD 288
              AI LF+ M  + V  +  +  ++L A +           HG L+  G  +   ++  
Sbjct: 407 SRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSG--FLSRIEVA 464

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP-VEPDANIWGALLGACRIYGNVE 343
           ++         ++D+  + G +E A  +   +P  + D   W A++    ++G+ E
Sbjct: 465 TI---------LIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGE 511



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 145/273 (53%), Gaps = 6/273 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL-VREMPIHNEFPNSVT 60
           YA       A  LF  +   ++ SWNAM+  +  + L   AL L V+ +     +P++ T
Sbjct: 66  YAMFGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYT 125

Query: 61  LTNVLPACARGHFLRP--GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
              V+ AC  G +L P  G  IHAR +  G + D F+ N+L  MY  CG + +A+ VF++
Sbjct: 126 YPFVIKAC--GDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDL 183

Query: 119 -SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              R  VS+N +I GY +     E+L +F  M   G++ D  + +  +  C+ L  ++ G
Sbjct: 184 MRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVG 243

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + +H +   K+L   + V NS+LD Y + G +D A  IF  +  +D  SW T++ GY + 
Sbjct: 244 RRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILN 303

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
           G+  +A+ L + M+ + V  + V+  ++L+AC+
Sbjct: 304 GDARSALLLCQMMQFESVKPNFVTLASVLSACA 336


>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
 gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
          Length = 767

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/417 (35%), Positives = 244/417 (58%), Gaps = 4/417 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MY+    P  A  +F  I  +++VSWNAM+  + +  +  +  ++ R+M       PN V
Sbjct: 196 MYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVV 255

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T+  VL AC     L  G+ +        +  D  + +AL  MY KCG +  A+ VF+ I
Sbjct: 256 TVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTI 315

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D V++N +I GY+Q    +E++SLF  MR+ GM+ D ++  G +SAC+ + A++ G 
Sbjct: 316 IDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGS 375

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           E+ G   R+ L+++++V  +++D Y + G +D A ++F  +P K+ ASWN LI G    G
Sbjct: 376 ELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNG 435

Query: 239 EVDTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
             D AI  F+ MR E+G+  D +++I +L+AC H GLV+ GK++F+ +  +  + P   H
Sbjct: 436 RGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEH 495

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y+CMVDLL R+G +E+A   I+ +P + DA + GALL ACR   NVE+G      +  L+
Sbjct: 496 YSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLE 555

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           P +   Y++ S +YA + + D+++K+R LM+ R   K PGCSWV+   +V +F   D
Sbjct: 556 PTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEVSGKVLEFYAGD 612



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 156/334 (46%), Gaps = 7/334 (2%)

Query: 25  SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARI 84
           S+N  +  FA +R    +L+L   M      P+S TL  +L A AR       +  HA +
Sbjct: 120 SYNVAIRFFASSRPH-TSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALL 178

Query: 85  IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESL 143
            + GLN      ++L  MY+       A+ VF+ I  RD VS+N ++  Y +     E  
Sbjct: 179 GKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVG 238

Query: 144 SLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202
            +F +M   G +  +VV+    ++AC +   +  G+ +   +    +     V +++L  
Sbjct: 239 RMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGM 298

Query: 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262
           Y + G I  A ++FD +  KD  +WN +I GY   G  + AI+LF +MR  G+  D ++ 
Sbjct: 299 YEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITL 358

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
             +L+ACS  G +E G +         +         +VD+  + G ++ A+++ + +P 
Sbjct: 359 AGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPC 418

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           +  A+ W AL+      G    G  A +H  +++
Sbjct: 419 KNVAS-WNALICGLAFNGR---GDEAIQHFQLMR 448



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 124/302 (41%), Gaps = 39/302 (12%)

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           SYN+ I  ++ +S    SL LF  M    ++ D  +    + A A   A    +  H + 
Sbjct: 120 SYNVAIRFFA-SSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALL 178

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
            +  L+ H    +S++  Y+       A K+FD +P +D  SWN ++  YG +G      
Sbjct: 179 GKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVG 238

Query: 245 NLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGK-----KYFDEMQADSVKPTE---M 295
            +F  M ++G V  + V+   +L AC   G +  G+      +   M+ DS+  +    M
Sbjct: 239 RMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGM 298

Query: 296 HYAC-----------------------MVDLLGRAGLMEDAVKLIKNLPV---EPDANIW 329
           +  C                       M+    + G+  +A+ L  ++ +    PD    
Sbjct: 299 YEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITL 358

Query: 330 GALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWDEASKVRELMK 387
             +L AC   G +ELG+   +     +  +   Y+   L +MYA+ G  D+A +V   M 
Sbjct: 359 AGVLSACSAVGALELGS-ELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMP 417

Query: 388 SR 389
            +
Sbjct: 418 CK 419


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 143/416 (34%), Positives = 237/416 (56%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +++K      A  LF  I + ++VS+NA+++ F+ N     A++  RE+ +  +  +S T
Sbjct: 248 VFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSST 307

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           +  ++P  +    L     I    ++ G      ++ ALT +Y++   ++LA+ +F+ S 
Sbjct: 308 MVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESS 367

Query: 121 RDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
              V+ +N +I GY+Q+     ++SLF EM       + V+    +SACA L A+  GK 
Sbjct: 368 EKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKS 427

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H +   K+L  +++V+ +++D Y + G I  A+++FD    K++ +WNT+I GYG+ G 
Sbjct: 428 VHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGY 487

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
            D A+ LF  M   G     V+++++L ACSH GLV +G + F  M     ++P   HYA
Sbjct: 488 GDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYA 547

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+LGRAG +E A++ I+ +PVEP   +WG LLGAC I+ +  L   A+E LF L P 
Sbjct: 548 CMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPG 607

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           + GYY+LLSN+Y+    + +A+ VRE +K R   K PGC+ ++       FV  DR
Sbjct: 608 NVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDR 663



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 165/341 (48%), Gaps = 2/341 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K SR A A  +F  + +++ V WN M+    +N     ++Q+ ++M       +S T
Sbjct: 147 LYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTT 206

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +  VLPA A    ++ G  I    ++ G +FD ++   L  +++KC  ++ A+ +F  I 
Sbjct: 207 VATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIR 266

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D VSYN LI G+S   +   ++  F E+ + G +    + +G I   +    +     
Sbjct: 267 KPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACC 326

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I G  ++        V+ ++   Y+R   IDLA ++FD    K  A+WN +I GY   G 
Sbjct: 327 IQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGL 386

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            + AI+LF+ M       +PV+  +IL+AC+  G +  GK     +++ +++        
Sbjct: 387 TEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTA 446

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           ++D+  + G + +A +L  +L  E +   W  ++    ++G
Sbjct: 447 LIDMYAKCGNISEASQLF-DLTSEKNTVTWNTMIFGYGLHG 486



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 149/354 (42%), Gaps = 46/354 (12%)

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           G  +HA  +  G + +LF+ +AL D+Y K   +  A+ VF+ +  RD V +N +I G  +
Sbjct: 122 GMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVR 181

Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
                +S+ +F +M   G++ D  +    + A A +  +K G  I  + ++   H   +V
Sbjct: 182 NCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYV 241

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG- 254
              ++  +++   +D A  +F  +   D  S+N LI G+   GE + A+  F  +   G 
Sbjct: 242 LTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQ 301

Query: 255 -------VGYDPVSYI---AILTACSHGGLVEKG------------------------KK 280
                  VG  PVS       L  C  G  V+ G                        ++
Sbjct: 302 RVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQ 361

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACR 337
            FDE    S + T   +  M+    ++GL E A+ L + +      P+     ++L AC 
Sbjct: 362 LFDE----SSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACA 417

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWDEASKVRELMKSR 389
             G +  G  +   L   K      Y+   L +MYA+ G   EAS++ +L   +
Sbjct: 418 QLGALSFGK-SVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEK 470



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 10/230 (4%)

Query: 51  IHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN 110
           I  +   +  L  +  AC   H      E HA++IR G   DL     LT      G   
Sbjct: 2   IRGDISRNTLLALISKACTFPHL----AETHAQLIRNGYQHDLATVTKLTQKLFDVGATR 57

Query: 111 LAQNV-FNISFRDEVSYNILIVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISAC 168
            A+ + F++   D   +N+LI G+S + D S S+S ++  ++   +  D  ++  AISA 
Sbjct: 58  HARALFFSVPKPDIFLFNVLIKGFSFSPDAS-SISFYTHLLKNTTLSPDNFTYAFAISAS 116

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
            +      G  +H   +     ++LFVA++++D Y +  R+  A K+FD +P +D+  WN
Sbjct: 117 PD---DNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWN 173

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           T+I G       D ++ +F+ M   GV  D  +   +L A +    V+ G
Sbjct: 174 TMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVG 223


>gi|357494773|ref|XP_003617675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519010|gb|AET00634.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 134/389 (34%), Positives = 231/389 (59%), Gaps = 1/389 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    + A  LF   ++ +I  WN M+  + +    +K +QL REM        SV 
Sbjct: 359 MYCKFGMLSFAERLFQR-SQGSIEYWNFMIVGYGRIGKNVKCIQLFREMQYLGIRSESVG 417

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + + + +C +   +  G+ IH  +I+  ++  + +TN+L +MY KC  +N++  +FN S 
Sbjct: 418 IVSAIASCGQLGEINLGRSIHCNVIKGFVDETISVTNSLIEMYGKCDKMNVSWRIFNRSE 477

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           RD + +N LI  +       E++SLF  M +     +  + +  +SAC++LA +++G+ +
Sbjct: 478 RDVILWNALISAHIHVKHYEEAISLFDIMIMEDQNPNTATLVVVLSACSHLAFLEKGERL 537

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H     K    +L +  +++D Y + G+++ + ++FD +  KD   WN +I GYGM G  
Sbjct: 538 HRYINEKGFKLNLPLGTALVDMYAKCGQLEKSREVFDSMMEKDVICWNAMISGYGMNGYA 597

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           ++AI +F  M E  V  + ++++++L+AC+H GLVE+GK  F +MQ+ SVKP   HY CM
Sbjct: 598 ESAIEIFNLMEESNVKPNEITFLSLLSACAHAGLVEEGKNVFAKMQSYSVKPNLKHYTCM 657

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
           VDLLGR+  +E+A +L+ ++P+ PD  +WGALL AC+ +  +E+G    ++    +P++ 
Sbjct: 658 VDLLGRSCNLEEAEELVLSMPIPPDGGVWGALLSACKTHNQIEMGIRIGKNAIDSEPEND 717

Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSR 389
           GYYI+++NMY+  G+WDEA  VR  MK R
Sbjct: 718 GYYIMVANMYSSIGRWDEAENVRRTMKDR 746



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 190/400 (47%), Gaps = 13/400 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K   P EA   F  +  K+++SW +M+  +A+  +    ++   EM  +   P+ + 
Sbjct: 258 MYCKCGVPREAYQSFSEVINKDLLSWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMV 317

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           +  +L        +  GK  H  IIR+    D  + N+L  MY K G L+ A+ +F  S 
Sbjct: 318 IGCILSGFGNSVDVYGGKAFHGLIIRRHYAPDEMVDNSLLSMYCKFGMLSFAERLFQRSQ 377

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
                +N +IVGY +     + + LF EM+ LG++ + V  + AI++C  L  I  G+ I
Sbjct: 378 GSIEYWNFMIVGYGRIGKNVKCIQLFREMQYLGIRSESVGIVSAIASCGQLGEINLGRSI 437

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   I+  +   + V NS+++ Y +  +++++ +IF+    +D   WN LI  +  +   
Sbjct: 438 HCNVIKGFVDETISVTNSLIEMYGKCDKMNVSWRIFN-RSERDVILWNALISAHIHVKHY 496

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           + AI+LF+ M  +    +  + + +L+ACSH   +EKG++    +     K        +
Sbjct: 497 EEAISLFDIMIMEDQNPNTATLVVVLSACSHLAFLEKGERLHRYINEKGFKLNLPLGTAL 556

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML----- 355
           VD+  + G +E + ++  ++ +E D   W A++    + G  E    +A  +F L     
Sbjct: 557 VDMYAKCGQLEKSREVFDSM-MEKDVICWNAMISGYGMNGYAE----SAIEIFNLMEESN 611

Query: 356 -KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394
            KP    +  LLS   A AG  +E   V   M+S   K N
Sbjct: 612 VKPNEITFLSLLSAC-AHAGLVEEGKNVFAKMQSYSVKPN 650



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 142/323 (43%), Gaps = 5/323 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y   + P  +S LFH++  K+   WN+ +       L  + L     M   N  PN  T
Sbjct: 52  LYDTLNHPTSSSTLFHSLPFKDTFLWNSFLKTLFSRSLYPQFLSFYSLMRSENVLPNHFT 111

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
              V  + A    +R G  +HA   + G    +  + ++   +Y++C  +N A  VF+ I
Sbjct: 112 FPMVASSYAHFMMIRSGMNLHALACKVGFFPENSAVGSSFVSLYSRCDEMNDAVKVFDEI 171

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG---MKHDVVSFMGAISACANLAAIK 175
             RD V++  L++GY Q  +    L   SEM  +G    K +  +  G   AC NL  + 
Sbjct: 172 PVRDVVAWTALVIGYVQNGESEMGLECISEMYRVGDDSQKPNARTLEGGFLACGNLGDLV 231

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G+ +HG+ ++  +   L + +S+L  Y + G    A + F  +  KD  SW ++I  Y 
Sbjct: 232 SGRCLHGLVVKNGIGCLLDIQSSVLSMYCKCGVPREAYQSFSEVINKDLLSWTSMIRVYA 291

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G +   +  F  M E+ V  D +    IL+   +   V  GK +   +      P EM
Sbjct: 292 RFGMMSDCVRFFWEMLENQVCPDGMVIGCILSGFGNSVDVYGGKAFHGLIIRRHYAPDEM 351

Query: 296 HYACMVDLLGRAGLMEDAVKLIK 318
               ++ +  + G++  A +L +
Sbjct: 352 VDNSLLSMYCKFGMLSFAERLFQ 374



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 18/190 (9%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           IS    +  ++     H VT+     T+ F+A  ++  Y        ++ +F  LP KD+
Sbjct: 15  ISLSKRITTLQSLLPFHAVTVTTGNSTNPFIAAKLISLYDTLNHPTSSSTLFHSLPFKDT 74

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK---- 280
             WN+ +            ++ +  MR + V  +  ++  + ++ +H  ++  G      
Sbjct: 75  FLWNSFLKTLFSRSLYPQFLSFYSLMRSENVLPNHFTFPMVASSYAHFMMIRSGMNLHAL 134

Query: 281 -----YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                +F E  A          +  V L  R   M DAVK+   +PV  D   W AL+  
Sbjct: 135 ACKVGFFPENSAVG--------SSFVSLYSRCDEMNDAVKVFDEIPVR-DVVAWTALVIG 185

Query: 336 CRIYGNVELG 345
               G  E+G
Sbjct: 186 YVQNGESEMG 195


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 151/418 (36%), Positives = 246/418 (58%), Gaps = 6/418 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVT 60
           Y K     +A  LF  + +K+ VSWN++V+  A+     + L +  +M   +E   N  T
Sbjct: 90  YLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFT 149

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-- 118
             +V+ AC        G  +H   ++ GL +++ + NAL +MY K G +  A  +F+   
Sbjct: 150 FLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMP 209

Query: 119 -SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
            S +  VS+N ++   +Q    +E+ + F  MR+ G   D  + +  + AC N    +  
Sbjct: 210 ESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACENFPLGRMV 269

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + +HGV     L  +L +  ++L+ Y++ GR++ + K+F+ +   D  +W  ++ GY M 
Sbjct: 270 EVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEISKPDKVAWTAMLAGYAMH 329

Query: 238 GEVDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPTEM 295
           G    AI  FE + RE+G+  D V++  +L+ACSH GLV++GK +F  M     V+P   
Sbjct: 330 GCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKYFFRVMSDVYKVQPRLD 389

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY+CMVDLLGR GL++DA +LIKN+P EP++ +WGALLGACR++ N++LG  AA++L  L
Sbjct: 390 HYSCMVDLLGRCGLLDDAHELIKNMPFEPNSGVWGALLGACRVHRNIDLGKEAAKNLIAL 449

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            P     YI+LSNMY+ AG W++ASKVR LMK++   +N GCS+++  +++  FVV+D
Sbjct: 450 DPSDPRNYIMLSNMYSAAGLWNDASKVRTLMKNKVLTRNQGCSFIEHGNKIHRFVVDD 507



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 88/174 (50%), Gaps = 19/174 (10%)

Query: 178 KEIHGVTIRKHLHTHL---------FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
           K    V+I + +H H+         F+ + ++  Y + G    A  +FD +P KD  SWN
Sbjct: 56  KSSSSVSICRIIHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWN 115

Query: 229 TLILGYGMLGEVDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDE--- 284
           +L+ G   +G++   +++F  M+ D  +  +  +++++++AC      ++G  Y+     
Sbjct: 116 SLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEG--YYVHCCA 173

Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI--WGALLGAC 336
           M+   V   ++  A +V++ G+ G +E A +L   +P E + +I  W +++  C
Sbjct: 174 MKLGLVYEVKVVNA-LVNMYGKFGFVESAFRLFSEMP-ESEKSIVSWNSIVAVC 225



 Score = 45.8 bits (107), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 66/129 (51%), Gaps = 13/129 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQ----LVREMPIHNEFP 56
           +Y+K  R   +  +F  I++ + V+W AM+A +A +    +A++    +VRE  +    P
Sbjct: 294 LYSKLGRLNNSRKVFEEISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGME---P 350

Query: 57  NSVTLTNVLPACARGHFLRPGK---EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ 113
           + VT T++L AC+    ++ GK    + + + +     D +  + + D+  +CG L+ A 
Sbjct: 351 DHVTFTHLLSACSHSGLVKEGKYFFRVMSDVYKVQPRLDHY--SCMVDLLGRCGLLDDAH 408

Query: 114 NVF-NISFR 121
            +  N+ F 
Sbjct: 409 ELIKNMPFE 417


>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 148/413 (35%), Positives = 238/413 (57%), Gaps = 10/413 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY   +       +F NI + N+V+W  ++A + +N    +AL++  +M   N  PN +T
Sbjct: 148 MYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEIT 207

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGL-------NFDLFLTNALTDMYAKCGCLNLAQ 113
           + N L ACA    +  G+ +H RI + G        N ++ L  A+ +MYAKCG L +A+
Sbjct: 208 MVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILATAILEMYAKCGRLKIAR 267

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
           ++FN +  R+ VS+N +I  Y+Q     E+L LF +M   G+  D  +F+  +S CA+  
Sbjct: 268 DLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFLSVLSVCAHQC 327

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           A+  G+ +H   ++  + T + +A ++LD Y ++G +  A KIF  L  KD   W ++I 
Sbjct: 328 ALALGQTVHAYLLKTGIATDISLATALLDMYAKTGELGNAQKIFSSLQKKDVVMWTSMIN 387

Query: 233 GYGMLGEVDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSV 290
           G  M G  + A+++F+ M+ED  +  D ++YI +L ACSH GLVE+ KK+F  M +   +
Sbjct: 388 GLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGVLFACSHVGLVEEAKKHFRLMTEMYGM 447

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
            P   HY CMVDLL RAG   +A +L++ + V+P+  IWGALL  C+I+ NV +      
Sbjct: 448 VPGREHYGCMVDLLSRAGHFREAERLMETMTVQPNIAIWGALLNGCQIHENVCVANQVKV 507

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTR 403
            L  L+P   G +ILLSN+YA+AG+W+E +  R++MK +   K  G S V+ +
Sbjct: 508 RLKELEPCQSGVHILLSNIYAKAGRWEEVNVTRKVMKHKRITKTIGHSSVEMK 560



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 162/340 (47%), Gaps = 11/340 (3%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +   I   ++  WN+M+  F  +     ++ L R+M  +   P+  T   VL AC  
Sbjct: 57  ADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCV 116

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
                 GK IH+ I++ G   D +    L  MY  C  +     VF NI   + V++  L
Sbjct: 117 IADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCL 176

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK-- 187
           I GY + +   E+L +F +M    ++ + ++ + A+ ACA+   I  G+ +H   IRK  
Sbjct: 177 IAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQ-RIRKAG 235

Query: 188 ------HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
                   ++++ +A +IL+ Y + GR+ +A  +F+ +P ++  SWN++I  Y       
Sbjct: 236 YDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQ 295

Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
            A++LF  M   GV  D  +++++L+ C+H   +  G+     +    +         ++
Sbjct: 296 EALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALL 355

Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           D+  + G + +A K+  +L  + D  +W +++    ++G+
Sbjct: 356 DMYAKTGELGNAQKIFSSLQ-KKDVVMWTSMINGLAMHGH 394



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 117/287 (40%), Gaps = 11/287 (3%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMY--AKCGCLNLAQNVFNISF 120
            +L   A+   +R  K++H  I+       +   + L D    ++ G +N A  V     
Sbjct: 6   TILSLLAKCKSMRELKKLHGLIVTTPTIKSIIPLSKLIDFCVDSEFGDINYADLVLRQIH 65

Query: 121 RDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
              V  +N +I G+  + +   S+ L+ +M   G   D  +F   + AC  +A    GK 
Sbjct: 66  NPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCVIADQDCGKC 125

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   ++       + A  +L  Y     +    K+FD +P  +  +W  LI GY    +
Sbjct: 126 IHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQ 185

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP------- 292
              A+ +FE M    V  + ++ +  L AC+H   ++ G+     ++     P       
Sbjct: 186 PYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNS 245

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339
             +    ++++  + G ++ A  L   +P + +   W +++ A   Y
Sbjct: 246 NIILATAILEMYAKCGRLKIARDLFNKMP-QRNIVSWNSMINAYNQY 291


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 146/416 (35%), Positives = 229/416 (55%), Gaps = 37/416 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A +LF  + +KN+VSWN M++ +A+N    K + L+ +M +    P+ VT
Sbjct: 199 MYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVT 258

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++ ++ A                                   Y +CG ++ A+ VF+   
Sbjct: 259 MSTIIAA-----------------------------------YCQCGRVDEARRVFSEFK 283

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V +  ++VGY++     ++L LF+EM L  ++ D  +    +S+CA LA++  G+ 
Sbjct: 284 EKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQA 343

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG +I   L+ +L V+++++D Y++ G ID A  +F+ +P ++  SWN +I+G    G 
Sbjct: 344 VHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGH 403

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+ LFE M +     D V++I IL+AC H   +E+G++YFD +     + PT  HYA
Sbjct: 404 DKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYA 463

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMV+LLGR G +E AV LIKN+  +PD  IW  LL  C   G++     AA HLF L P 
Sbjct: 464 CMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPT 523

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               YI+LSNMYA  G+W + + VR LMKS+  KK  G SW++  +EV  F   DR
Sbjct: 524 IAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDR 579



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 172/355 (48%), Gaps = 14/355 (3%)

Query: 41  KALQLVREMPIHNEFPNSVTLTN-VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99
           +A +L   M  H   P    L N +L   A+   LR  + +  +++++    D+F  NAL
Sbjct: 40  QAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKR----DIFSWNAL 95

Query: 100 TDMYAKCGCL-NLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
              YAK G + NL      + FRD VSYN  I G+S  S   ESL LF  M+  G +   
Sbjct: 96  LSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTE 155

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
            + +  ++A A L+ ++ GK+IHG  I ++   ++F+ N++ D Y + G I+ A  +FDC
Sbjct: 156 YTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDC 215

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           L  K+  SWN +I GY   G+ +  I L   MR  G   D V+   I+ A    G V++ 
Sbjct: 216 LTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEA 275

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGA 335
           ++ F E +   +    + +  M+    + G  EDA+ L   +    +EPD+    +++ +
Sbjct: 276 RRVFSEFKEKDI----VCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSS 331

Query: 336 CRIYGNVELG-AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
           C    ++  G A   + +      +      L +MY++ G  D+A  V  LM +R
Sbjct: 332 CAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTR 386



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 168/369 (45%), Gaps = 39/369 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAKS         F  +  ++ VS+N  +A F+ N    ++L+L + M      P   T+
Sbjct: 99  YAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTI 158

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++L A A+   LR GK+IH  II +    ++F+ NALTDMYAKCG +  A+ +F+ ++ 
Sbjct: 159 VSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTK 218

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ VS+N++I GY++     + + L  +MRL G   D V+    I+A             
Sbjct: 219 KNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA------------- 265

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
                                 Y + GR+D A ++F     KD   W  +++GY   G  
Sbjct: 266 ----------------------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGRE 303

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           + A+ LF  M  + +  D  +  +++++C+    +  G+    +     +    +  + +
Sbjct: 304 EDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSAL 363

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--LKPQ 358
           +D+  + G ++DA  +   +P   +   W A++  C   G+ +      E++     KP 
Sbjct: 364 IDMYSKCGFIDDARSVFNLMPTR-NVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPD 422

Query: 359 HCGYYILLS 367
           +  +  +LS
Sbjct: 423 NVTFIGILS 431


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 147/427 (34%), Positives = 239/427 (55%), Gaps = 13/427 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K  R  +A   F  I EKN++SW + V+  A N   +K L+L  EM   +  PN  T
Sbjct: 212 LYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFT 271

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           LT+ L  C     L  G ++++  I+ G   +L + N+L  +Y K GC+  A  +FN + 
Sbjct: 272 LTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMD 331

Query: 120 FRDEVSYNILIVGYSQT--------SDC---SESLSLFSEMRLLGMKHDVVSFMGAISAC 168
               V++N +I G++Q         S C   SE+L LFS++ L GMK D+ +    +S C
Sbjct: 332 DASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVC 391

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
           + + AI+QG++IH  TI+    + + V+ S++  Y++ G I+ A+K F  +  +   +W 
Sbjct: 392 SRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWT 451

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           ++I G+   G    A+++FE M   GV  + V+++ +L+ACSH G+V +   YF+ MQ  
Sbjct: 452 SMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQKK 511

Query: 289 -SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAW 347
             +KP   HY CMVD+  R G +E A+  IK +  EP   IW   +  C+ +GN+ELG +
Sbjct: 512 YKIKPAMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCKSHGNLELGFY 571

Query: 348 AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQ 407
           AAE L  LKP+    Y+LL NMY  A ++++ S+VR++M+  +  K    SW+  +D+V 
Sbjct: 572 AAEQLLSLKPKDPETYVLLLNMYLSAERFEDVSRVRKMMEEEKVGKLKDWSWISIKDKVY 631

Query: 408 DFVVNDR 414
            F  N +
Sbjct: 632 SFKTNGK 638



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 195/432 (45%), Gaps = 58/432 (13%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK     +A  +F N+  +N+V+W  ++  F QN     A+ + +EM     +P+  T
Sbjct: 111 VYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYT 170

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L+ VL AC+    L+ G + HA II+  ++FD  + +AL  +Y+KCG L  A   F+ I 
Sbjct: 171 LSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIR 230

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ +S+   +   +      + L LF EM  + +K +  +   A+S C  + +++ G +
Sbjct: 231 EKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQ 290

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           ++ + I+    ++L V NS+L  Y +SG I  A+++F+ +      +WN +I G+  + E
Sbjct: 291 VYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMME 350

Query: 240 V-----------DTAINLFEAMREDGVGYDPVSYIAILTACSH----------------- 271
           +             A+ LF  +   G+  D  +  ++L+ CS                  
Sbjct: 351 LTKDNLSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKT 410

Query: 272 ------------------GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
                              G +E+  K F EM       T + +  M+    + G+ + A
Sbjct: 411 GFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTR----TMIAWTSMITGFSQHGMSQQA 466

Query: 314 VKLIKNLP---VEPDANIWGALLGACRIYGNVELGAWAAEHL---FMLKPQHCGYYILLS 367
           + + +++    V P+A  +  +L AC   G V       E +   + +KP    +Y  + 
Sbjct: 467 LHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPA-MDHYECMV 525

Query: 368 NMYAEAGKWDEA 379
           +M+   G+ ++A
Sbjct: 526 DMFVRLGRLEQA 537



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 36/216 (16%)

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSD 138
           +H  +++ G + + F+ + L ++YAKCG +  A+ VF N+  R+ V++  L+VG+ Q S 
Sbjct: 89  VHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQNSQ 148

Query: 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
              ++ +F EM   G    V +    + AC++L ++K G + H   I+ H+     V ++
Sbjct: 149 PKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSA 208

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
           +   Y++ GR++ A K F  +  K+  SW + +                           
Sbjct: 209 LCSLYSKCGRLEDALKTFSRIREKNVISWTSAV--------------------------- 241

Query: 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
                   +AC+  G   KG + F EM A  +KP E
Sbjct: 242 --------SACADNGAPVKGLRLFVEMIAVDIKPNE 269



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 84/176 (47%), Gaps = 1/176 (0%)

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220
           ++  +  C +  +  + + +HG  ++   H + FV + +++ Y + G ++ A ++FD + 
Sbjct: 70  YVPLLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNML 129

Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
            ++  +W TL++G+    +   AI++F+ M   G      +  A+L ACS    ++ G +
Sbjct: 130 RRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQ 189

Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
           +   +    V       + +  L  + G +EDA+K    +  E +   W + + AC
Sbjct: 190 FHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIR-EKNVISWTSAVSAC 244


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 154/421 (36%), Positives = 245/421 (58%), Gaps = 2/421 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  + A A  +   + E ++VSW AM+A + Q+ +  +ALQL  EM       +++ 
Sbjct: 507 MYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIG 566

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
             + + ACA    LR G++IHA+    G   DL + NAL  +YA+CG +  A   F  I 
Sbjct: 567 FASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIG 626

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ +S+N L+ G +Q+    E+L +F  M     + ++ ++  AISA A+LA IKQG++
Sbjct: 627 DKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQ 686

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH + ++    +   V+NS++  Y +SG I  A + F+ +  ++  SWN +I GY   G 
Sbjct: 687 IHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGC 746

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+ LFE M+  G+  + V+++ +L+ACSH GLV++G  YF+ M +   + P   HY 
Sbjct: 747 GMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYV 806

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDLLGRAG ++ A++ IK +P+  DA IW  LL AC I+ N+E+G  AA HL  L+P+
Sbjct: 807 CVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPE 866

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
               Y+L+SN+YA + +W      R+LMK    KK PG SW++ ++ V  F   D++   
Sbjct: 867 DSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPL 926

Query: 419 T 419
           T
Sbjct: 927 T 927



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 178/336 (52%), Gaps = 2/336 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K+     A  +F+ I  K+IV+W AM++  +QN LE +A+ L  +M     FP    
Sbjct: 204 LYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYV 263

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L++VL A  +      G+++H  +I+ G + + ++ N L  +Y++   L  A+ +F+ ++
Sbjct: 264 LSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMN 323

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VSYN LI G  Q      +L LF++M+   +K D ++    +SACA++ A+ +G +
Sbjct: 324 SRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQ 383

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   I+  +   + +  S+LD Y++   ++ A+K F     ++   WN +++ YG L  
Sbjct: 384 LHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDN 443

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
           +  +  +F  M+ +G+  +  +Y +IL  C+  G +  G++    +     +      + 
Sbjct: 444 LSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSV 503

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++D+  + G +  A+++++ LP E D   W A++  
Sbjct: 504 LIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAG 538



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 162/314 (51%), Gaps = 1/314 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y++S +   A  +F  +  ++ VS+N++++   Q     +AL+L  +M      P+ +T
Sbjct: 305 LYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCIT 364

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + ++L ACA    L  G ++H+  I+ G++ D+ L  +L D+Y+KC  +  A   F    
Sbjct: 365 VASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTE 424

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             + V +N+++V Y Q  + S+S  +F +M++ GM  +  ++   +  C +L A+  G++
Sbjct: 425 TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ 484

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+     +++V + ++D Y + G++ LA +I   LP  D  SW  +I GY     
Sbjct: 485 IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDM 544

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
              A+ LFE M   G+ +D + + + ++AC+    + +G++   +  A            
Sbjct: 545 FSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNA 604

Query: 300 MVDLLGRAGLMEDA 313
           ++ L  R G +++A
Sbjct: 605 LISLYARCGRIQEA 618



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 157/344 (45%), Gaps = 6/344 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y +      A  +F   + +++ SWN M+  F   +   +   L R M      PN  T 
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 62  TNVLPACARGHF-LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             VL AC  G       K++H+R    G +    + N L D+Y+K G +  A+ VFN I 
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V++  +I G SQ     E++ LF +M    +          +SA   +   + G++
Sbjct: 223 MKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQ 282

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H + I+   H+  +V N ++  Y+RS ++  A +IF  +  +D  S+N+LI G    G 
Sbjct: 283 LHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGF 342

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
            D A+ LF  M+ D +  D ++  ++L+AC+  G + KG +         +    +    
Sbjct: 343 SDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGS 402

Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
           ++DL  +   +E A K       E +  +W  +L A   YG ++
Sbjct: 403 LLDLYSKCADVETAHKFFLXTETE-NIVLWNVMLVA---YGQLD 442



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 111/243 (45%), Gaps = 5/243 (2%)

Query: 40  LKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99
           ++ +  + E  + + + N + L   L  C     L     +H RI + G + +  L ++L
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWL---LEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSL 99

Query: 100 TDMYAKCGCLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
            D Y + G  + A  VF+  S R   S+N +I  +       +   LF  M   G+  + 
Sbjct: 100 VDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNG 159

Query: 159 VSFMGAISAC-ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
            +F G + AC     A    K++H  T      +   VAN ++D Y+++G I+ A K+F+
Sbjct: 160 YTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFN 219

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
           C+ +KD  +W  +I G    G  + AI LF  M    +   P    ++L+A +   L E 
Sbjct: 220 CICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFEL 279

Query: 278 GKK 280
           G++
Sbjct: 280 GEQ 282



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/200 (19%), Positives = 81/200 (40%), Gaps = 8/200 (4%)

Query: 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
           S+ + L + M   G++ +  +++  +  C    ++ +   +H    +        + +S+
Sbjct: 40  SKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSL 99

Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
           +D Y R G    A K+FD    +   SWN +I  +           LF  M  +G+  + 
Sbjct: 100 VDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNG 159

Query: 260 VSYIAILTACSHGGLVEKGKKYFDEMQADS----VKPTEMHYACMVDLLGRAGLMEDAVK 315
            ++  +L AC  G +      Y  ++ + +       + +    ++DL  + G +E A K
Sbjct: 160 YTFAGVLKACVGGDI---AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKK 216

Query: 316 LIKNLPVEPDANIWGALLGA 335
           +  N     D   W A++  
Sbjct: 217 VF-NCICMKDIVTWVAMISG 235


>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/416 (35%), Positives = 241/416 (57%), Gaps = 17/416 (4%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN----EFPNSVTLTNVL 65
           ++ +LF  I ++++VSW +++A   QN     A+++ +E+ +      E  + V + +VL
Sbjct: 31  DSRHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSVL 90

Query: 66  PACARGHFLRPG-----KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             C    F + G     + +H  +I++G    + + N L D YAK G + +A+    ++ 
Sbjct: 91  LGCVVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVAKVFDGMNE 150

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKE 179
            D   +N +I  Y+Q    +E+ S+F +M   G  +++ V     +S      A++ GK 
Sbjct: 151 SDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSGNFRYNAVIMDXGLSG-----ALQLGKC 205

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH   I+  L   +FV  SI+D Y +  R+++A K FDC+ VK+  SW  ++ GYGM G 
Sbjct: 206 IHHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGR 265

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ +F  M   GV  + ++++++L ACSH G++++G  +F+ M+ +  V+P   HY 
Sbjct: 266 AKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRMKCEFIVEPGIEHYL 325

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAG +     LIK +  +PD  IWG+LLGACRI+ NVELG  +A  LF L   
Sbjct: 326 CMVDLLGRAGYLX-CYGLIKEMNAKPDFIIWGSLLGACRIHKNVELGEISARKLFELDXS 384

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +CGYY+LLSN+YA+AG+WDE  ++R LMKSR   K PG S V+ +  +   +V D+
Sbjct: 385 NCGYYVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIHVLLVGDK 440



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K  R   A   F  +  KN+ SW AMVA +  +    +A+++  +M      PN +T
Sbjct: 228 IYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGRAKEAMEIFYKMIRSGVKPNYIT 287

Query: 61  LTNVLPACARGHFLRPG 77
             +VL AC+    L+ G
Sbjct: 288 FVSVLAACSHAGMLKEG 304


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 146/416 (35%), Positives = 229/416 (55%), Gaps = 37/416 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A +LF  + +KN+VSWN M++ +A+N    K + L+ +M +    P+ VT
Sbjct: 199 MYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVT 258

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           ++ ++ A                                   Y +CG ++ A+ VF+   
Sbjct: 259 MSTIIAA-----------------------------------YCQCGRVDEARRVFSEFK 283

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V +  ++VGY++     ++L LF+EM L  ++ D  +    +S+CA LA++  G+ 
Sbjct: 284 EKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQA 343

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG +I   L+ +L V+++++D Y++ G ID A  +F+ +P ++  SWN +I+G    G 
Sbjct: 344 VHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGH 403

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
              A+ LFE M +     D V++I IL+AC H   +E+G++YFD +     + PT  HYA
Sbjct: 404 DKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYA 463

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMV+LLGR G +E AV LIKN+  +PD  IW  LL  C   G++     AA HLF L P 
Sbjct: 464 CMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPT 523

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               YI+LSNMYA  G+W + + VR LMKS+  KK  G SW++  +EV  F   DR
Sbjct: 524 IAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDR 579



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 170/355 (47%), Gaps = 14/355 (3%)

Query: 41  KALQLVREMPIHNEFPNSVTLTN-VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99
           +A +L   M  H   P    L N +L   A+   LR  + +  +++++    D F  NAL
Sbjct: 40  QAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKR----DXFSWNAL 95

Query: 100 TDMYAKCGCL-NLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
              YAK G + NL      + FRD VSYN  I G+S  S   ESL LF  M+  G +   
Sbjct: 96  LSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTE 155

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
            + +  ++A A L  ++ GK+IHG  I ++   ++F+ N++ D Y + G I+ A  +FDC
Sbjct: 156 YTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDC 215

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           L  K+  SWN +I GY   G+ +  I L   MR  G   D V+   I+ A    G V++ 
Sbjct: 216 LTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEA 275

Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGA 335
           ++ F E +   +    + +  M+    + G  EDA+ L   +    +EPD+    +++ +
Sbjct: 276 RRVFSEFKEKDI----VCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSS 331

Query: 336 CRIYGNVELG-AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
           C    ++  G A   + +      +      L +MY++ G  D+A  V  LM +R
Sbjct: 332 CAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTR 386



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 157/341 (46%), Gaps = 37/341 (10%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAKS         F  +  ++ VS+N  +A F+ N    ++L+L + M      P   T+
Sbjct: 99  YAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTI 158

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            ++L A A+   LR GK+IH  II +    ++F+ NALTDMYAKCG +  A+ +F+ ++ 
Sbjct: 159 VSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTK 218

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ VS+N++I GY++     + + L  +MRL G   D V+    I+A             
Sbjct: 219 KNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA------------- 265

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
                                 Y + GR+D A ++F     KD   W  +++GY   G  
Sbjct: 266 ----------------------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGRE 303

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           + A+ LF  M  + +  D  +  +++++C+    +  G+    +     +    +  + +
Sbjct: 304 EDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSAL 363

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           +D+  + G ++DA  +   +P   +   W A++  C   G+
Sbjct: 364 IDMYSKCGFIDDARSVFNLMPTR-NVVSWNAMIVGCAQNGH 403


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 142/416 (34%), Positives = 239/416 (57%), Gaps = 8/416 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQ---LVREMPIHNEFPN 57
           MY+K  R  EA  +F  +  ++++SWNAM+A +       +AL    +++E  I  E P+
Sbjct: 514 MYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKI-KERPD 572

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNV 115
             TLT++L AC+    +  GK+IH  ++R G +      +T +L D+Y KCG L  A+  
Sbjct: 573 EFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKA 632

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F+ I  +  +S++ LI+GY+Q  D  E++ LF  ++ L  + D       I   A+ A +
Sbjct: 633 FDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALL 692

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           +QGK++  + ++        V+NS++D Y + G +D A K F  + +KD  SW  +I GY
Sbjct: 693 QQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGY 752

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPT 293
           G  G    A+++F  M    +  D V Y+A+L+ACSH G++++G++ F ++ +   +KP 
Sbjct: 753 GKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPR 812

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HYAC+VDLLGRAG +++A  L+  +P++P+  IW  LL  CR++G++ELG    + L 
Sbjct: 813 VEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILL 872

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
            +  ++   Y+++SN+Y +AG W+E    REL   +  +K  G SWV+   EV  F
Sbjct: 873 RIDGKNPANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIEREVHFF 928



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 198/436 (45%), Gaps = 59/436 (13%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F ++ E+N+VSW A+++    N     +L L  EM     +PN  T
Sbjct: 413 MYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPNEFT 472

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
            +  L AC   + L  G +IH   ++ G    + + N+L DMY+KCG +N A+ VF  + 
Sbjct: 473 FSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMV 532

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH--DVVSFMGAISACANLAAIKQG 177
            R  +S+N +I GY      S +L+ F  M+   +K   D  +    + AC++   I  G
Sbjct: 533 GRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAG 592

Query: 178 KEIHGVTIRKHLH--THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           K+IHG  +R   H  +   +  S++D Y + G +  A K FD +  K   SW++LILGY 
Sbjct: 593 KQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYA 652

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAIL---------------------------TA 268
             G+   A+ LF+ ++E     D     +I+                           T+
Sbjct: 653 QEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETS 712

Query: 269 CSHG--------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
            S+         GLV++ +K F EMQ   V    + +  M+   G+ GL + AV +   +
Sbjct: 713 VSNSLVDMYLKCGLVDEAEKCFAEMQLKDV----ISWTVMITGYGKHGLGKKAVSIFNKM 768

Query: 321 ---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFM-------LKPQHCGYYILLSNMY 370
               +EPD   + A+L AC   G ++ G    E LF        +KP+   +Y  + ++ 
Sbjct: 769 LRHNIEPDEVCYLAVLSACSHSGMIKEG----EELFSKLLETQGIKPR-VEHYACVVDLL 823

Query: 371 AEAGKWDEASKVRELM 386
             AG+  EA  + + M
Sbjct: 824 GRAGRLKEAKHLVDTM 839



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 108/201 (53%), Gaps = 5/201 (2%)

Query: 83  RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSE 141
           R+   GLN  L  +N L DMY KC    +A  VF+ +  R+ VS+  L+ G+    D + 
Sbjct: 396 RLSGSGLN--LITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNG 453

Query: 142 SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201
           SLSLF+EM   G+  +  +F   + AC  L A+++G +IHG  ++      + V NS++D
Sbjct: 454 SLSLFTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVD 513

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y++ GRI+ A K+F  +  +   SWN +I GY   G    A+  F  M+E  +   P  
Sbjct: 514 MYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDE 573

Query: 262 Y--IAILTACSHGGLVEKGKK 280
           +   ++L ACS  G++  GK+
Sbjct: 574 FTLTSLLKACSSTGMIYAGKQ 594


>gi|414881411|tpg|DAA58542.1| TPA: hypothetical protein ZEAMMB73_802520 [Zea mays]
          Length = 696

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 159/424 (37%), Positives = 234/424 (55%), Gaps = 10/424 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPI----HNEFPN 57
           Y  SS    A  +F ++        N M++ F       +AL ++REM        +   
Sbjct: 244 YMCSSCVQYAGRVFRDVRISTCFLGNLMISGFLDTGQRNQALGVLREMAFGCGHEAQHLP 303

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
           S +LT VLP        + G EIHA   R G   D  + NAL  MYA+ G +  +  VF 
Sbjct: 304 SASLTLVLPEVNLA--TKRGLEIHAYAYRHGFECDTSVCNALMAMYARGGKICRSDKVFQ 361

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +  +D VS+N +I GY+   D   S  LF EM+  G + D  +F   ++AC+     + 
Sbjct: 362 GLDAKDVVSWNTMISGYATVHDFDLSFELFREMQRNGTRPDDYTFTSVLNACSFACNHRT 421

Query: 177 GKEIHGVTIRKHL-HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
              +HG  IR  L H+++   NS++D Y + G I  A KIFD    KD+ SWN +I  YG
Sbjct: 422 VMALHGQMIRMGLCHSYVDDMNSLMDAYGKCGFIAEAQKIFDETERKDTVSWNIIISCYG 481

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
             G    AI LF  M++       V++IA+L ACSH GLV++  +YF+ M  D S+   E
Sbjct: 482 YSGFPQRAIRLFHQMQDQSYKPTRVTFIAVLAACSHAGLVDEALRYFEAMHGDYSITADE 541

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYAC+VD  GRAG ++ A + I+ +PV P+A +WGALL +CRI+GN+ L   AA+ L  
Sbjct: 542 AHYACIVDCFGRAGQLQRAYEFIRGMPVVPNACVWGALLSSCRIHGNIGLAEIAAKKLVE 601

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRD-EVQDFVVND 413
           L PQH GY++LL +MY++A +W++ S++R  M+    KK PG SW++ RD EV  F+  D
Sbjct: 602 LDPQHSGYWMLLKDMYSKAKRWNDVSQLRAAMRDNGVKKCPGYSWIEGRDSEVHRFLTAD 661

Query: 414 RMKT 417
           ++ +
Sbjct: 662 KLHS 665



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 122/250 (48%), Gaps = 10/250 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+  +   +  +F  +  K++VSWN M++ +A       + +L REM  +   P+  T
Sbjct: 346 MYARGGKICRSDKVFQGLDAKDVVSWNTMISGYATVHDFDLSFELFREMQRNGTRPDDYT 405

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF-LTNALTDMYAKCGCLNLAQNVFNIS 119
            T+VL AC+     R    +H ++IR GL        N+L D Y KCG +  AQ +F+ +
Sbjct: 406 FTSVLNACSFACNHRTVMALHGQMIRMGLCHSYVDDMNSLMDAYGKCGFIAEAQKIFDET 465

Query: 120 FR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA----AI 174
            R D VS+NI+I  Y  +     ++ LF +M+    K   V+F+  ++AC++      A+
Sbjct: 466 ERKDTVSWNIIISCYGYSGFPQRAIRLFHQMQDQSYKPTRVTFIAVLAACSHAGLVDEAL 525

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILG 233
           +  + +HG         H      I+D + R+G++  A +    +PV  +A  W  L+  
Sbjct: 526 RYFEAMHGDYSITADEAHY---ACIVDCFGRAGQLQRAYEFIRGMPVVPNACVWGALLSS 582

Query: 234 YGMLGEVDTA 243
             + G +  A
Sbjct: 583 CRIHGNIGLA 592



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD- 223
           + A A+    + G ++H   ++  L    F A+++L  Y+    +     +FD +P    
Sbjct: 62  LRAAADHRLPRLGLQLHAFLVKTRLLADPFSASALLHLYSTIAPLHRTRLLFDRIPKSTY 121

Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
              WNT+IL Y   G +D A +L  AM E G+     ++ A++  C
Sbjct: 122 PVPWNTMILRYAQDGFLDEAFDLMVAMEESGIPIGASTWNAVIAGC 167


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 152/437 (34%), Positives = 243/437 (55%), Gaps = 24/437 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    AEA  +F  +  ++ VSWNA++A   QN    + L L   M      P+  T
Sbjct: 384 MYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFT 443

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             +VL AC  G  L  G EIH+ I++ G+  +  +  +L DMY+KCG +  A+ + +  F
Sbjct: 444 FGSVLKACTGGS-LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFF 502

Query: 121 RDE---------------------VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
           +                       VS+N +I GY       ++  LF+ M  +G+  D  
Sbjct: 503 QRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKF 562

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           ++   +  CANLA+   GK+IH   I+K L + ++++++++D Y++ G +  +  +F+  
Sbjct: 563 TYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKS 622

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
             +D  +WN +I GY   G+ + AI LFE M  + +  + V++I+IL AC+H GL++KG 
Sbjct: 623 LRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGL 682

Query: 280 KYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
           +YF  M+ D  + P   HY+ MVD+LG++G ++ A++LI+ +P E D  IW  LLG C I
Sbjct: 683 EYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTI 742

Query: 339 Y-GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           +  NVE+   A   L  L PQ    Y LLSN+YA+AG W++ S +R  M+  + KK PGC
Sbjct: 743 HRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGC 802

Query: 398 SWVQTRDEVQDFVVNDR 414
           SWV+ +DE+  F+V D+
Sbjct: 803 SWVELKDELHVFLVGDK 819



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 164/321 (51%), Gaps = 10/321 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R  E+  +F  I EKN VSW+A++A   QN L   AL+  +EM   N   +   
Sbjct: 182 MYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSI 241

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             +VL +CA    LR G ++HA  ++     D  +  A  DMYAKC  +  AQ +F+ S 
Sbjct: 242 YASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSE 301

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             +  SYN +I GYSQ     ++L LF  +   G+  D +S  G   ACA +  + +G +
Sbjct: 302 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 361

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I+ + I+  L   + VAN+ +D Y +   +  A ++FD +  +D+ SWN +I  +   G+
Sbjct: 362 IYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGK 421

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMH 296
               + LF +M    +  D  ++ ++L AC+ G L      Y  E+ +  VK    +   
Sbjct: 422 GYETLFLFVSMLRSRIEPDEFTFGSVLKACTGGSL-----GYGMEIHSSIVKSGMASNSS 476

Query: 297 YAC-MVDLLGRAGLMEDAVKL 316
             C ++D+  + G++E+A K+
Sbjct: 477 VGCSLIDMYSKCGMIEEAEKI 497



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 158/335 (47%), Gaps = 2/335 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAKS+   +AS+ F+ +  +++VSWN+M++ + QN   LK++++  +M       +  T 
Sbjct: 82  YAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTF 141

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             +L  C+       G +IH  ++R G + D+   +AL DMYAK      +  VF  I  
Sbjct: 142 AIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPE 201

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ VS++ +I G  Q +  S +L  F EM+ +        +   + +CA L+ ++ G ++
Sbjct: 202 KNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQL 261

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++        V  + LD Y +   +  A  +FD     +  S+N +I GY      
Sbjct: 262 HAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHG 321

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A+ LF  +   G+G+D +S   +  AC+    + +G + +D     S+          
Sbjct: 322 FKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAA 381

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +D+ G+   + +A ++   +    DA  W A++ A
Sbjct: 382 IDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIAA 415



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 103/235 (43%), Gaps = 32/235 (13%)

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMY------------------------ 103
           CA+   L  GK+ HA +I  G     F+ N L  +Y                        
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSW 75

Query: 104 -------AKCGCLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155
                  AK   +  A   FN+   RD VS+N ++ GY Q  +  +S+ +F +M   G +
Sbjct: 76  NKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTE 135

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
            D  +F   +  C+ L     G +IHGV +R    T +  A+++LD Y +  R   + ++
Sbjct: 136 FDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRV 195

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
           F  +P K+S SW+ +I G      +  A+  F+ M++   G     Y ++L +C+
Sbjct: 196 FQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCA 250



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 54/211 (25%)

Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
           CA   A++ GK+ H   I        FV N +L  YT S     A+ +FD +P++D  SW
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSW 75

Query: 228 NTLILGYG-------------------------ML------GEVDTAINLFEAMREDGVG 256
           N +I GY                          ML      GE   +I +F  M   G  
Sbjct: 76  NKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTE 135

Query: 257 YDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
           +D  ++  IL  CS           HG +V  G         D V  +      ++D+  
Sbjct: 136 FDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVG------CDTDVVAAS-----ALLDMYA 184

Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
           +     +++++ + +P E ++  W A++  C
Sbjct: 185 KGKRFVESLRVFQGIP-EKNSVSWSAIIAGC 214


>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
 gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
          Length = 721

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 159/425 (37%), Positives = 237/425 (55%), Gaps = 15/425 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN-RLELKALQLVREMPIHNEFPNSV 59
           MYAK    + A  +F  I  KN+VSWNA++A +AQ+     +AL L  +M  H   P   
Sbjct: 184 MYAKCGDLSTAKSVFDRIPAKNVVSWNALIAAYAQSGHSHHQALDLFEKMAEHGVRPCRA 243

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF---LTNALTDMYAKCGCLNLAQNVF 116
           T   VL AC     L   ++IHARI+  GL FD+    + NAL +MYAKCG L +A+++F
Sbjct: 244 TFVGVLGACNDVTSL---EKIHARIVETGLQFDVRDVGVQNALLNMYAKCGSLEVARDIF 300

Query: 117 -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
             +  RD+VS N++I  ++Q     ES+ +F EM L G+  D  +F   I+AC+   A++
Sbjct: 301 RKMQRRDQVSMNVMIATFAQQGLGKESIQVFREMDLEGLPQDDTTFASVITACSCCGALE 360

Query: 176 QGKEIHGVTI-----RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
            GK IH   +     RK    ++ V  +++  Y + G ++ A  +F  +  K+S SWN +
Sbjct: 361 FGKRIHKRVVEPVLGRKCCLPNVVVETALVSMYGKCGTLEQAKAVFKAMTTKNSVSWNAM 420

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-S 289
           +      G+ D A     A   +GV  D  S+I++L ACSH G++E    +F  M +D  
Sbjct: 421 LAACAHQGQGDEAAAFLRAAACEGVELDSASFISVLIACSHSGMLEVAYDHFQLMLSDFD 480

Query: 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAA 349
           + P   +Y CMVDLL R+G + DA +L+ ++P  PDA  W  LLG CR+ G++E  A AA
Sbjct: 481 LVPAAENYRCMVDLLARSGRLGDADELMNSMPFSPDAIAWRTLLGGCRVQGSLENAASAA 540

Query: 350 EHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKK-NPGCSWVQTRDEVQD 408
           E  F L+PQ+   Y LLS++Y+  GK DE  ++R  MK R  +K  PG S ++    V +
Sbjct: 541 EQAFNLEPQNTAPYTLLSSLYSATGKKDELVELRSSMKERGLRKLVPGRSVIEVHGRVHE 600

Query: 409 FVVND 413
           FV  D
Sbjct: 601 FVAGD 605



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 179/356 (50%), Gaps = 26/356 (7%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M AK     EA  +F  I  KNI SWN +++ +A       AL L  +M +    P ++T
Sbjct: 85  MLAKHGSLCEARSIFDAIQHKNIFSWNIIISAYAHRGHPSTALHLFAKMDVP---PTAMT 141

Query: 61  LTNVLPACARGHFLRPGKEIHARI-IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
               L AC+    L+ G+EIHARI   +G+   + L  A+  MYAKCG L+ A++VF+ I
Sbjct: 142 FATALSACSSLGDLQRGREIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRI 201

Query: 119 SFRDEVSYNILIVGYSQTSDC-SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
             ++ VS+N LI  Y+Q+     ++L LF +M   G++    +F+G + AC ++ ++++ 
Sbjct: 202 PAKNVVSWNALIAAYAQSGHSHHQALDLFEKMAEHGVRPCRATFVGVLGACNDVTSLEK- 260

Query: 178 KEIHGVTIRKHLH---THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
             IH   +   L      + V N++L+ Y + G +++A  IF  +  +D  S N +I  +
Sbjct: 261 --IHARIVETGLQFDVRDVGVQNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIATF 318

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G    +I +F  M  +G+  D  ++ +++TACS  G +E GK+    +    V+P  
Sbjct: 319 AQQGLGKESIQVFREMDLEGLPQDDTTFASVITACSCCGALEFGKRIHKRV----VEPVL 374

Query: 295 MHYAC---------MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
               C         +V + G+ G +E A  + K +  +   + W A+L AC   G 
Sbjct: 375 GRKCCLPNVVVETALVSMYGKCGTLEQAKAVFKAMTTKNSVS-WNAMLAACAHQGQ 429



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 168/359 (46%), Gaps = 54/359 (15%)

Query: 80  IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSD 138
           IH +I R GL    +L N L  M AK G L  A+++F+ I  ++  S+NI+I  Y+    
Sbjct: 63  IHQKITRAGLGSSAYLNNLLVLMLAKHGSLCEARSIFDAIQHKNIFSWNIIISAYAHRGH 122

Query: 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG-VTIRKHLHTHLFVAN 197
            S +L LF++M    +    ++F  A+SAC++L  +++G+EIH  +   + +   + +  
Sbjct: 123 PSTALHLFAKM---DVPPTAMTFATALSACSSLGDLQRGREIHARIKASRGIRPSVILDT 179

Query: 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV-DTAINLFEAMREDGVG 256
           +I   Y + G +  A  +FD +P K+  SWN LI  Y   G     A++LFE M E GV 
Sbjct: 180 AIFSMYAKCGDLSTAKSVFDRIPAKNVVSWNALIAAYAQSGHSHHQALDLFEKMAEHGVR 239

Query: 257 YDPVSYIAILTACS--------HGGLVEKGKKY--------------------------- 281
               +++ +L AC+        H  +VE G ++                           
Sbjct: 240 PCRATFVGVLGACNDVTSLEKIHARIVETGLQFDVRDVGVQNALLNMYAKCGSLEVARDI 299

Query: 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE---PDANIWGALLGACRI 338
           F +MQ    +  ++    M+    + GL ++++++ + + +E    D   + +++ AC  
Sbjct: 300 FRKMQ----RRDQVSMNVMIATFAQQGLGKESIQVFREMDLEGLPQDDTTFASVITACSC 355

Query: 339 YGNVELGAWAAEHLF--MLKPQHCGYYIL----LSNMYAEAGKWDEASKVRELMKSREA 391
            G +E G    + +   +L  + C   ++    L +MY + G  ++A  V + M ++ +
Sbjct: 356 CGALEFGKRIHKRVVEPVLGRKCCLPNVVVETALVSMYGKCGTLEQAKAVFKAMTTKNS 414



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 8/177 (4%)

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           SF  AI +C +  ++     IH    R  L +  ++ N ++    + G +  A  IFD +
Sbjct: 46  SFAAAIRSCKDSNSVSI---IHQKITRAGLGSSAYLNNLLVLMLAKHGSLCEARSIFDAI 102

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
             K+  SWN +I  Y   G   TA++LF  M    V    +++   L+ACS  G +++G+
Sbjct: 103 QHKNIFSWNIIISAYAHRGHPSTALHLFAKM---DVPPTAMTFATALSACSSLGDLQRGR 159

Query: 280 KYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +    ++A   ++P+ +    +  +  + G +  A  +   +P + +   W AL+ A
Sbjct: 160 EIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAK-NVVSWNALIAA 215


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 143/416 (34%), Positives = 232/416 (55%), Gaps = 36/416 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
           MYA+  RP +A  +F  +  +++VSWNAM++ FA   L  +A+ + RE+  +    P++ 
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T+ ++LP+  +                                 A+   + L + VF+ +
Sbjct: 61  TMASILPSMGK---------------------------------ARVEDIALLKGVFDEM 87

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
            F   +S+N ++  Y+      E++ LF  M+  G++ D V+    + +C  ++A+  GK
Sbjct: 88  RFTGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGK 147

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            IH V  R+ + + + + N+++D Y   G +  A  +FD +  +D  SW ++I  YG  G
Sbjct: 148 RIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHG 207

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               AI+LFE M   G+  D ++++AIL ACSH GL++ GK YF  M ++  + P   HY
Sbjct: 208 HGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHY 267

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACMVDLLGRAG + +A   I  +P++P+  +WGALLGACRI+ N+++G  AA+ L  L P
Sbjct: 268 ACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAP 327

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +  GYY+LLSN+YA AG+W + S VR +M+S+  KK PG S  +  D V  F + D
Sbjct: 328 KQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDSVHTFHIGD 383


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 158/437 (36%), Positives = 240/437 (54%), Gaps = 34/437 (7%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  ++++N+VS+N M+  FA+    L  L+L  +M  H   P+  T+  +L  C +
Sbjct: 182 ARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQ 241

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN------------- 117
               + GK +HA+I +   + +L L NAL DMY KC  L LA+ VF+             
Sbjct: 242 LGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTI 301

Query: 118 -------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
                              I  RD VS+N LI GY+Q  D      LF+ M    +K D 
Sbjct: 302 IAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDK 361

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
           V+ +  ISA A + A+ QG+ IHG+ ++       F  ++++D Y + G I+ A  IF+ 
Sbjct: 362 VTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQ 421

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P KD  +W T+I G+   G  + A+ LF  M+ +    D V+++++L ACSH GLV++G
Sbjct: 422 IPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAETKPND-VTFVSVLAACSHSGLVDEG 480

Query: 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
            K F  M+   S++P   HY C+VDLL R+G + DA+ +I+ +P+EP  +IWGA+L ACR
Sbjct: 481 LKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACR 540

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           ++ N+EL   A   L  L+P+  G YILLSN+YA  G+W  +  +RE+M SR  KK  GC
Sbjct: 541 MHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGC 600

Query: 398 SWVQTRDEVQDFVVNDR 414
           S V     V DF  +++
Sbjct: 601 SSVAVDGMVHDFTASNK 617



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 184/415 (44%), Gaps = 55/415 (13%)

Query: 16  HNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLR 75
           H     N+  +N M+  F  +    KA  + R M  +  +P+  T   +L       F+ 
Sbjct: 90  HFTPYPNLYIFNTMILGFPFS--NEKAFTIYRSMLQNGTYPDRQTFLYLLQTTK---FVA 144

Query: 76  PGKEIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGY 133
             K+IH   +  GL + + +L N+L   Y   GC   A+ +F+ +S R+ VSYN +I+G+
Sbjct: 145 EVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGF 204

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           ++  +    L LF +MR  G++ D  + +G +  C  L   K GK +H    +    ++L
Sbjct: 205 AKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNL 264

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
            + N++LD Y +   + LA K+FD    KD+ SWNT+I GY  +GE++ A +LF  +   
Sbjct: 265 ILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTR 324

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY---------------- 297
               D VS+ ++++  +  G     K  F  M A++VKP ++                  
Sbjct: 325 ----DIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQG 380

Query: 298 -------------------ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
                              + ++D+  + G +E A  +   +P E D   W  ++     
Sbjct: 381 RWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIP-EKDVTTWTTMITGFAF 439

Query: 339 YGNVELGAWAAEHLFML----KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
           +G    G  A E   ++    KP    +  +L+   + +G  DE  K+   MK R
Sbjct: 440 HG---FGNKALELFSVMQAETKPNDVTFVSVLAAC-SHSGLVDEGLKIFSSMKKR 490



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 121/233 (51%), Gaps = 4/233 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A  LF+ I  ++IVSWN++++ +AQN   +    L   M   N  P+ VT+
Sbjct: 305 YAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTI 364

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            N++ A A    L  G+ IH   ++     + F  +AL DMY KCG +  A  +FN I  
Sbjct: 365 VNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPE 424

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D  ++  +I G++     +++L LFS M+     +D V+F+  ++AC++   + +G +I
Sbjct: 425 KDVTTWTTMITGFAFHGFGNKALELFSVMQAETKPND-VTFVSVLAACSHSGLVDEGLKI 483

Query: 181 HGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
                +++ +   +     ++D   RSGR+  A  + + +P++ S S W  ++
Sbjct: 484 FSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVL 536



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F+ I EK++ +W  M+  FA +    KAL+L   M    + PN VT
Sbjct: 405 MYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAETK-PNDVT 463

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK 87
             +VL AC+    +  G +I + + ++
Sbjct: 464 FVSVLAACSHSGLVDEGLKIFSSMKKR 490


>gi|414869047|tpg|DAA47604.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 694

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 139/420 (33%), Positives = 249/420 (59%), Gaps = 7/420 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL-VREMPIHNEFPNSVT 60
           Y++    A++  +F  I  ++++SWN+M+  +A + L+ +A++  VR M      P+  +
Sbjct: 237 YSQCDALADSRKIFDGIESRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYS 296

Query: 61  LTNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
            T+ +  C+  G   + G+ IH+ +I+ GL     + NA+  MY +     + ++ +N  
Sbjct: 297 FTSAISVCSEHGCDDQQGRSIHSLVIKFGLEGVTPVCNAMIAMYTRFADNCMMEDAYNCF 356

Query: 118 --ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
             + F+D VS+N ++ GYS     S++L  F  MR   ++ D      A+ +C++LA ++
Sbjct: 357 SSLVFKDAVSWNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLR 416

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
            G+++H + ++    ++ FV++S++  Y++ G +  A K F+      S  WN+++ GY 
Sbjct: 417 LGRQVHSLVVQSGFASNDFVSSSLIFMYSKCGVLGDARKSFEEADKSSSVPWNSMMFGYA 476

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
             G+  T  +LF  M +  V  D V+++A++TA SHGGLV++G +  + M+     P  M
Sbjct: 477 QHGQAQTVTDLFNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEILNTMETRYKIPMRM 536

Query: 296 -HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYAC VDL GRAG ++ A +LI+++P +PDA +W  LLGACRI+GN+EL +  A HLF+
Sbjct: 537 EHYACGVDLYGRAGQLDKAKELIESMPFQPDAIVWMTLLGACRIHGNMELASDVARHLFV 596

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
            +P+    Y+LLS+MY+  G W + + V+++M++R   K PG SW++ ++EV  F  +DR
Sbjct: 597 AEPRQHSTYVLLSSMYSGLGMWSDRATVQKVMRNRALSKIPGWSWIEVKNEVHSFNADDR 656



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 185/396 (46%), Gaps = 8/396 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK  R  +A  +F  +  +NIVSWNA++A +  +R   +A++L  EM      P+  T
Sbjct: 135 VYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVGSVPDGTT 194

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
              +L   A   +    +++H +I++ G    L   NA    Y++C  L  ++ +F+ I 
Sbjct: 195 FAVLLATIAGPRWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQCDALADSRKIFDGIE 254

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLAA-IKQG 177
            RD +S+N ++  Y+      E++  F   MR  G++ D+ SF  AIS C+      +QG
Sbjct: 255 SRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEHGCDDQQG 314

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSG---RIDLANKIFDCLPVKDSASWNTLILGY 234
           + IH + I+  L     V N+++  YTR      ++ A   F  L  KD+ SWN+++ GY
Sbjct: 315 RSIHSLVIKFGLEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVFKDAVSWNSMLTGY 374

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G    A+  F  MR + +  D     A L +CS   ++  G++    +        +
Sbjct: 375 SHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLRLGRQVHSLVVQSGFASND 434

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE-LGAWAAEHLF 353
              + ++ +  + G++ DA K  +    +  +  W +++     +G  + +     E L 
Sbjct: 435 FVSSSLIFMYSKCGVLGDARKSFEEAD-KSSSVPWNSMMFGYAQHGQAQTVTDLFNEMLD 493

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
           +  P     ++ L   Y+  G  DE S++   M++R
Sbjct: 494 LEVPLDHVTFVALITAYSHGGLVDEGSEILNTMETR 529



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 156/331 (47%), Gaps = 7/331 (2%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           A A  +F  I   +  SWN+++A          A +L+R M       ++  L + L + 
Sbjct: 42  AAARRVFDEIPHPDAASWNSLLAAHVAAGAHRDAWRLLRAMHARGLAASTFALGSALRSA 101

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
           A       G ++ +  +R GL  ++F  +AL D+YAKCG L  A+ VF+ +  R+ VS+N
Sbjct: 102 AAARRPELGAQLQSFSVRCGLADNVFPASALLDVYAKCGRLGDARRVFDGMPVRNIVSWN 161

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            +I GY+ +   +E++ LF EM+ +G   D  +F   ++  A        +++HG  ++ 
Sbjct: 162 AIIAGYTDSRKPAEAMELFLEMQRVGSVPDGTTFAVLLATIAGPRWYSLMRQLHGKIVKY 221

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                L   N+ +  Y++   +  + KIFD +  +D  SWN+++  Y   G  D A+  F
Sbjct: 222 GSALGLVALNAAITAYSQCDALADSRKIFDGIESRDLISWNSMLGAYAYHGLDDEAMRFF 281

Query: 248 -EAMREDGVGYDPVSYIAILTACS-HGGLVEKGKKYFD---EMQADSVKPTEMHYACMVD 302
              MRE G+  D  S+ + ++ CS HG   ++G+       +   + V P       M  
Sbjct: 282 VRMMRESGIQPDMYSFTSAISVCSEHGCDDQQGRSIHSLVIKFGLEGVTPVCNAMIAMYT 341

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                 +MEDA     +L V  DA  W ++L
Sbjct: 342 RFADNCMMEDAYNCFSSL-VFKDAVSWNSML 371



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 131/311 (42%), Gaps = 46/311 (14%)

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
           R H      + HA +++ G +        LT  Y+  G L  A+ VF+ I   D  S+N 
Sbjct: 4   RQHHALAAAKSHATLLKSGASSPTPWNQLLT-AYSATG-LAAARRVFDEIPHPDAASWNS 61

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           L+  +       ++  L   M   G+     +   A+ + A     + G ++   ++R  
Sbjct: 62  LLAAHVAAGAHRDAWRLLRAMHARGLAASTFALGSALRSAAAARRPELGAQLQSFSVRCG 121

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
           L  ++F A+++LD Y + GR+  A ++FD +PV++  SWN +I GY    +   A+ LF 
Sbjct: 122 LADNVFPASALLDVYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFL 181

Query: 249 AMREDGVGYDPVSYIAILTACS-----------HGGLVEKG------------------- 278
            M+  G   D  ++  +L   +           HG +V+ G                   
Sbjct: 182 EMQRVGSVPDGTTFAVLLATIAGPRWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQCD 241

Query: 279 -----KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA----VKLIKNLPVEPDANIW 329
                +K FD +++  +    + +  M+      GL ++A    V++++   ++PD   +
Sbjct: 242 ALADSRKIFDGIESRDL----ISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSF 297

Query: 330 GALLGACRIYG 340
            + +  C  +G
Sbjct: 298 TSAISVCSEHG 308


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 143/416 (34%), Positives = 231/416 (55%), Gaps = 34/416 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPI-HNEFPNSV 59
           MY++  RP +A  +F  +  +++VSWNAM+A FA+  L  +A+++ ++  +     P++ 
Sbjct: 167 MYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAG 226

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           T+  +LPA          K    R +R+   FD                        N+ 
Sbjct: 227 TMAGILPAMGN------AKPDDIRFVRR--VFD------------------------NMQ 254

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           F++ +S+N ++  Y+      +++ LF  M    ++ D ++    +  C  L+A   GK 
Sbjct: 255 FKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKR 314

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH +  RK++  +L + N+++D Y   G +  A +IFD +  +D  SW ++I  YG  G 
Sbjct: 315 IHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGH 374

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A++LFE M   G+  D ++++A+L ACSH GL+  GK YFD M +   + P   HY 
Sbjct: 375 GREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYT 434

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGRAG + +A   I  + +EP+  +WGALL ACRI+ N+++G  AA++LF L P+
Sbjct: 435 CMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPE 494

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
             GYY+LLSNMYA AG+W + + VR +M ++  KK PG S V+  D+V  F + DR
Sbjct: 495 QTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDR 550



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 143/312 (45%), Gaps = 29/312 (9%)

Query: 99  LTDMYAKCGCLNLAQNVFNISFRD------EVSYNILIVGYSQTSDCSESLSLFSEMRLL 152
           L   YA C  L LA  V   S  D       V +N+LI   + +S   ++L LF+ MR  
Sbjct: 56  LIQAYAACSALPLAHTVLESSSPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPR 115

Query: 153 GMK--HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210
           G     D  ++  A+ +C+    +  G +IH    +  L  +++VA+S +  Y+R GR +
Sbjct: 116 GPACFPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPE 175

Query: 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA-MREDGVGYDPVSYIAILTAC 269
            A ++FD +P +D  SWN +I G+  +G  D AI +F+  +   G   D  +   IL A 
Sbjct: 176 DAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAM 235

Query: 270 SHGGL--VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK---LIKNLPVEP 324
            +     +   ++ FD MQ   +    + +  M+ +         AV+   L++   VEP
Sbjct: 236 GNAKPDDIRFVRRVFDNMQFKEL----ISWNAMLAVYANNEFHVKAVELFMLMEKDEVEP 291

Query: 325 DANIWGALLGACRIYGNVELGAWAAE---HLFMLKPQHCGYYIL---LSNMYAEAGKWDE 378
           D+     +L  C      EL A++     H  + +   C   +L   L +MYA  G   +
Sbjct: 292 DSITLATVLPPCG-----ELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKD 346

Query: 379 ASKVRELMKSRE 390
           A ++ +LM +R+
Sbjct: 347 AREIFDLMSARD 358



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 134/327 (40%), Gaps = 38/327 (11%)

Query: 19  AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE--FPNSVTLTNVLPACARGHFLRP 76
           +    V +N ++     + L   AL L   M       FP+  T    L +C+    L  
Sbjct: 82  SRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLL 141

Query: 77  GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           G +IH+ + +  L+ ++++ ++   MY++CG    A  VF+ +  RD VS+N +I G+++
Sbjct: 142 GLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFAR 201

Query: 136 TSDCSESLSLFSEMRLL-GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
                 ++ +F +  +L G   D  +  G + A  N                        
Sbjct: 202 VGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGN------------------------ 237

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
                     +   I    ++FD +  K+  SWN ++  Y        A+ LF  M +D 
Sbjct: 238 ---------AKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDE 288

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
           V  D ++   +L  C        GK+  + ++  ++ P  +    ++D+    G ++DA 
Sbjct: 289 VEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDA- 347

Query: 315 KLIKNLPVEPDANIWGALLGACRIYGN 341
           + I +L    D   W +++ A   +G+
Sbjct: 348 REIFDLMSARDVISWTSIISAYGKHGH 374


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 158/437 (36%), Positives = 240/437 (54%), Gaps = 34/437 (7%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  ++++N+VS+N M+  FA+    L  L+L  +M  H   P+  T+  +L  C +
Sbjct: 117 ARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQ 176

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN------------- 117
               + GK +HA+I +   + +L L NAL DMY KC  L LA+ VF+             
Sbjct: 177 LGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTI 236

Query: 118 -------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
                              I  RD VS+N LI GY+Q  D      LF+ M    +K D 
Sbjct: 237 IAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDK 296

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
           V+ +  ISA A + A+ QG+ IHG+ ++       F  ++++D Y + G I+ A  IF+ 
Sbjct: 297 VTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQ 356

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
           +P KD  +W T+I G+   G  + A+ LF  M+ +    D V+++++L ACSH GLV++G
Sbjct: 357 IPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAETKPND-VTFVSVLAACSHSGLVDEG 415

Query: 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
            K F  M+   S++P   HY C+VDLL R+G + DA+ +I+ +P+EP  +IWGA+L ACR
Sbjct: 416 LKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACR 475

Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           ++ N+EL   A   L  L+P+  G YILLSN+YA  G+W  +  +RE+M SR  KK  GC
Sbjct: 476 MHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGC 535

Query: 398 SWVQTRDEVQDFVVNDR 414
           S V     V DF  +++
Sbjct: 536 SSVAVDGMVHDFTASNK 552



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 184/415 (44%), Gaps = 55/415 (13%)

Query: 16  HNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLR 75
           H     N+  +N M+  F  +    KA  + R M  +  +P+  T   +L       F+ 
Sbjct: 25  HFTPYPNLYIFNTMILGFPFSNE--KAFTIYRSMLQNGTYPDRQTFLYLLQTT---KFVA 79

Query: 76  PGKEIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGY 133
             K+IH   +  GL + + +L N+L   Y   GC   A+ +F+ +S R+ VSYN +I+G+
Sbjct: 80  EVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGF 139

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL 193
           ++  +    L LF +MR  G++ D  + +G +  C  L   K GK +H    +    ++L
Sbjct: 140 AKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNL 199

Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
            + N++LD Y +   + LA K+FD    KD+ SWNT+I GY  +GE++ A +LF  +   
Sbjct: 200 ILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTR 259

Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY---------------- 297
               D VS+ ++++  +  G     K  F  M A++VKP ++                  
Sbjct: 260 ----DIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQG 315

Query: 298 -------------------ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
                              + ++D+  + G +E A  +   +P E D   W  ++     
Sbjct: 316 RWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIP-EKDVTTWTTMITGFAF 374

Query: 339 YGNVELGAWAAEHLFML----KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
           +G    G  A E   ++    KP    +  +L+   + +G  DE  K+   MK R
Sbjct: 375 HG---FGNKALELFSVMQAETKPNDVTFVSVLAAC-SHSGLVDEGLKIFSSMKKR 425



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 121/233 (51%), Gaps = 4/233 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      A  LF+ I  ++IVSWN++++ +AQN   +    L   M   N  P+ VT+
Sbjct: 240 YAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTI 299

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            N++ A A    L  G+ IH   ++     + F  +AL DMY KCG +  A  +FN I  
Sbjct: 300 VNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPE 359

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D  ++  +I G++     +++L LFS M+     +D V+F+  ++AC++   + +G +I
Sbjct: 360 KDVTTWTTMITGFAFHGFGNKALELFSVMQAETKPND-VTFVSVLAACSHSGLVDEGLKI 418

Query: 181 HGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
                +++ +   +     ++D   RSGR+  A  + + +P++ S S W  ++
Sbjct: 419 FSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVL 471



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  +F+ I EK++ +W  M+  FA +    KAL+L   M    + PN VT
Sbjct: 340 MYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAETK-PNDVT 398

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK 87
             +VL AC+    +  G +I + + ++
Sbjct: 399 FVSVLAACSHSGLVDEGLKIFSSMKKR 425


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/438 (34%), Positives = 233/438 (53%), Gaps = 34/438 (7%)

Query: 10  EASYLFHNIA-EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           ++  LF  +A  +N+VSWN M+   AQ     +A  L REM       +  T  ++L  C
Sbjct: 160 DSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVC 219

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI---------- 118
           ++   L  G+ +H  ++  G   DL L NAL DMY KCG L +A   F++          
Sbjct: 220 SKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWT 279

Query: 119 ----------------------SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH 156
                                   R+ +S+N +I  Y Q     E+L L++ M+ LG+  
Sbjct: 280 SMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTP 339

Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
           D V+  G +S       +  G+ IH           + V NS++D Y R G++D +  +F
Sbjct: 340 DEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLF 399

Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
             +P K++ SWN +I    M G    A+  F AM  D    D ++++ +L+ACSHGGL+E
Sbjct: 400 TEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLE 459

Query: 277 KGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
            G+ YF  M+   +VKP   HYACMVDLLGR G +  AV LIK++P++PD  +WGAL+GA
Sbjct: 460 DGQYYFKAMRHIYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGA 519

Query: 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395
           CRI+G+VE+G  A + L  L+  + G ++L+SN+  E  +W++  ++R+LM+ R  KK+ 
Sbjct: 520 CRIHGHVEIGKLAIKQLLELEGINGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDM 579

Query: 396 GCSWVQTRDEVQDFVVND 413
           G S ++  + + +F V D
Sbjct: 580 GVSSIEINNSIHEFGVED 597



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 150/301 (49%), Gaps = 6/301 (1%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
            A  +F  + + +  ++N+++  ++ +    +AL L R++      PN  TL  VL AC+
Sbjct: 59  HARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACS 118

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--ISFRDEVSYN 127
           R          H   I+ G    +F+ NAL    A  G L  ++ +F      R+ VS+N
Sbjct: 119 RARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWN 178

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            +I G +Q  + SE+ +LF EMR  G+  DV +F+  +  C+    ++ G+ +H   +  
Sbjct: 179 TMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLAS 238

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
                L + N+++D Y + G + +A++ FD +P+K+  SW +++      G VD A + F
Sbjct: 239 GSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWF 298

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
           E M E  +    +S+ A+++    GG   +    ++ M++  + P E+  A ++ + G+ 
Sbjct: 299 EQMPERNI----ISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQN 354

Query: 308 G 308
           G
Sbjct: 355 G 355



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 113/279 (40%), Gaps = 42/279 (15%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSW-------------------------------NAM 29
           MY K      A   F  +  KN+VSW                               NAM
Sbjct: 253 MYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAM 312

Query: 30  VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
           ++ + Q     + L L   M      P+ VTL  VL    +   L  G+ IH  I     
Sbjct: 313 ISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFS 372

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148
           +  + + N+L DMYA+CG ++ + ++F  +  ++ +S+N++I   +      E++  F  
Sbjct: 373 DPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRA 432

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEI-----HGVTIRKHLHTHLFVANSILDFY 203
           M       D ++F+G +SAC++   ++ G+       H   ++  +  +      ++D  
Sbjct: 433 MVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHY----ACMVDLL 488

Query: 204 TRSGRIDLANKIFDCLPVK-DSASWNTLILGYGMLGEVD 241
            R G +  A  +   +P+K D   W  LI    + G V+
Sbjct: 489 GRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVE 527


>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
 gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
          Length = 572

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 143/442 (32%), Positives = 248/442 (56%), Gaps = 33/442 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA      +A  +F  +A +++VSW  M+ ++ Q R   +AL    +M       + + L
Sbjct: 115 YAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLIL 174

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---- 117
             VL AC     LR GK IH+ ++   +  +  L++AL ++YA C  + +A+ ++N    
Sbjct: 175 ATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKLYNGMPR 234

Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
                                       +  +D VS++ +I GY+ ++  +E+LSLF++M
Sbjct: 235 KDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDM 294

Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
           +  G++ D V+ +  ISACANL ++ + K IH       L+  L + N+++D + + G I
Sbjct: 295 QECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGI 354

Query: 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269
           +LA  IF+ +P K+  +W ++I  + M G+  +A+ LFE MR +GV  + V+++ +L AC
Sbjct: 355 NLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYAC 414

Query: 270 SHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
            H GLV +G+  F  M Q   ++P   HY CMVDLLGRA LM++AV LI+++ + P+  +
Sbjct: 415 CHAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPV 474

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388
           WG+LL AC ++G+++LGA+AA+ +  L P H G  +LLS +Y ++   ++A +VR++MK 
Sbjct: 475 WGSLLAACWMHGDLKLGAFAAKKILQLDPNHDGASVLLSKIYMKSDNLNDAQEVRDVMKL 534

Query: 389 REAKKNPGCSWVQTRDEVQDFV 410
           +   K  G SW+   +   +F 
Sbjct: 535 QGVSKETGLSWMDLNEPFHEFT 556



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 166/341 (48%), Gaps = 42/341 (12%)

Query: 37  RLELKALQLVREMPIHNEFPNSVTLTNVLPACAR----GHFLRPGKEIHARIIRKGLNFD 92
           RL L A   +R   +    P +  L  +L + AR    G ++R     HA   R G   D
Sbjct: 50  RLVLAACACLRRTGLPPPGPRA--LPALLRSAARCVGAGAYVRGA---HALAFRVGSLDD 104

Query: 93  LFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL 151
            F+  AL   YA CGC+  A+ VF+ ++ RD VS+ +++  Y QT +  E+L  F++M+ 
Sbjct: 105 GFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKN 164

Query: 152 LGMKHDVVSFMGAISACANLAAIKQGKEIHG------VTIRKHLHTHL------------ 193
            G+  D +     +SAC ++  ++ GK IH       + I  HL + L            
Sbjct: 165 SGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEM 224

Query: 194 ------------FVANSILDF-YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
                        V+++ + F Y R+ + ++A  IFD +P KD  SW+ +I GY    + 
Sbjct: 225 AEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQP 284

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
           + A++LF  M+E G+  D V+ +++++AC++ G ++K K     ++ + +         +
Sbjct: 285 NEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNAL 344

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
           +D+  + G +  A+ +   +P + +   W +++ A  ++G+
Sbjct: 345 IDMFAKCGGINLALNIFNEMP-QKNVITWTSMITAFAMHGD 384



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 45/87 (51%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+AK      A  +F+ + +KN+++W +M+  FA +     AL L  +M      PN VT
Sbjct: 347 MFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVT 406

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRK 87
             N+L AC     +  G+ + + ++++
Sbjct: 407 FLNLLYACCHAGLVHEGRSLFSSMVQQ 433


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 148/399 (37%), Positives = 229/399 (57%), Gaps = 7/399 (1%)

Query: 19  AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78
             +N+VSW AM+    QN     A  L   M   N  PN  T + VL A      L P  
Sbjct: 365 GSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIP--ILLP-- 420

Query: 79  EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
           +IHA+II+        +  AL   Y+K G    A ++F  I  +D V+++ ++  YSQ  
Sbjct: 421 QIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAG 480

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACAN-LAAIKQGKEIHGVTIRKHLHTHLFVA 196
           DC  + ++F +M + GMK +  +   AI ACA+  A I QG++ H ++I+      + V 
Sbjct: 481 DCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVG 540

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           ++++  Y R G ID A  +F+    +D  SWN++I GY   G    A++ F  M   G+ 
Sbjct: 541 SALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIE 600

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVK 315
            D  +++A++  C+H GLV++G++YFD M  D ++ PT  HY+CMVDL  RAG +++ + 
Sbjct: 601 MDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMN 660

Query: 316 LIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGK 375
           LI+ +P    A +W  LLGACR++ NVELG  AA+ L +L+P     Y+LLSN+YA AG+
Sbjct: 661 LIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGR 720

Query: 376 WDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           W E  +VR+LM S++ KK  GCSW+Q +++V  F+  D+
Sbjct: 721 WKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDK 759



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 135/270 (50%), Gaps = 2/270 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +   +F  + ++N+V+W +++  + Q R     + L   M     +PN  T
Sbjct: 144 MYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFT 203

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            T+VL A A    +  G+ +HA+ ++ G    +F+ N+L +MY+KCG +  A+ VF  + 
Sbjct: 204 FTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQME 263

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N L+ G        E+L LF + R    K    ++   I  CANL  +   ++
Sbjct: 264 TRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQ 323

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLILGYGMLG 238
           +H   ++   H+   V  +I+D Y++ G +D A  IF  +P  ++  SW  +I G     
Sbjct: 324 LHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNA 383

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           ++  A  LF  MRED V  +  +Y  +LTA
Sbjct: 384 DIPLAAALFSRMREDNVKPNEFTYSTVLTA 413



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 136/288 (47%), Gaps = 2/288 (0%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLN-FDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           ++ VL  C        G+++H   ++ G +  ++ +  AL DMY KCG +   + VF  +
Sbjct: 102 VSRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGM 161

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ V++  L+ GY Q   CS+ ++LF  MR  G+  +  +F   +SA A+  A+  G+
Sbjct: 162 PKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGR 221

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
            +H  +++    + +FV NS+++ Y++ G ++ A  +F  +  +D  SWNTL+ G  +  
Sbjct: 222 RVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNE 281

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
               A+ LF   R         +Y  ++  C++   +   ++    +             
Sbjct: 282 HQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMT 341

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGA 346
            ++D   + G ++DA  +   +P   +   W A++G C    ++ L A
Sbjct: 342 AIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAA 389



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 122/234 (52%), Gaps = 4/234 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+K     EA  +F  I  K++V+W+AM++ ++Q      A  +  +M +    PN  T+
Sbjct: 445 YSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTI 504

Query: 62  TNVLPACARGHF-LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           ++ + ACA     +  G++ HA  I+      + + +AL  MYA+ G ++ A+ VF   +
Sbjct: 505 SSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQT 564

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N +I GY+Q     E+L  F +M  +G++ D  +F+  I  C +   +K+G++
Sbjct: 565 DRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQ 624

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA-SWNTLI 231
                +  H +   +   + ++D Y+R+G++D    + + +P    A  W TL+
Sbjct: 625 YFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLL 678



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 1/117 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+      A  +F    ++++VSWN+M++ +AQ+    +AL   R+M       +  T
Sbjct: 546 MYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGAT 605

Query: 61  LTNVLPACARGHFLRPGKE-IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
              V+  C     ++ G++   + ++   ++  +   + + D+Y++ G L+   N+ 
Sbjct: 606 FLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLI 662


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 147/411 (35%), Positives = 232/411 (56%), Gaps = 7/411 (1%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN--SVTLTNVLPA 67
           +A+ +F ++A  NI + NA +   AQN     A+Q           PN    T T+VL A
Sbjct: 42  QAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKA 101

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF---RDEV 124
           CA    +  G++IHA + ++G   +LF+ N+L DMY K G L LA+++F+  F   R+ V
Sbjct: 102 CAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVV 161

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGV 183
            +N +I GY+Q    S+++ +F  M+  G +  + V+ +  + ACA+L A+  GK I G 
Sbjct: 162 CWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGF 221

Query: 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
             R+ +   LF+ N++ D Y + G I  A ++F+ +  +D  SW+ +I G  M G  D A
Sbjct: 222 ISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEA 281

Query: 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVD 302
              F  M + G   + V ++ +LTAC+H GLV+KG   F+ M  +  V P   HY C+VD
Sbjct: 282 FGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVD 341

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362
           LL RAG ++ A  +I ++P++P+  IWGALLG CRIY +   G    +H+  L   H G 
Sbjct: 342 LLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGS 401

Query: 363 YILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           Y+ L+N+Y+  G+ D+A+K R  M+     K PGCSW++  + V +F + D
Sbjct: 402 YVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGD 452



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 39/217 (17%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     EA  +F+ + E++++SW+ ++   A      +A     EM    E PN V 
Sbjct: 240 MYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVV 299

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
              +L AC            HA +++KGLN                 C N     + +S 
Sbjct: 300 FMGLLTACT-----------HAGLVKKGLN-----------------CFNTMDKEYGVSP 331

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           + E  Y  ++   S+  +  ++  + S M    MK +V+ +   +  C       +G+ +
Sbjct: 332 KVE-HYGCVVDLLSRAGELDKAEDMISSMP---MKPNVIIWGALLGGCRIYRDSGRGQRV 387

Query: 181 --HGVTI-RKHLHTHLFVANSILDFYTRSGRIDLANK 214
             H + +   H  +++++AN     Y+  GR+D A K
Sbjct: 388 VQHILELDSDHSGSYVYLAN----VYSSMGRLDDAAK 420


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/416 (36%), Positives = 229/416 (55%), Gaps = 7/416 (1%)

Query: 1   MYAKSSRPAEASYLFHNIA-EKNIVSWNAMVANFAQNRLELKALQLVREMPIH--NEFPN 57
           +Y+K  R  +A  +F        I +WNAMV+ +A       AL + REM  H     P+
Sbjct: 103 VYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPD 162

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNV 115
             T  ++L AC+     R G ++HA +   G +   +  L  AL DMY KC  L +A  V
Sbjct: 163 EFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQV 222

Query: 116 F-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F  +  ++ + +  ++VG++Q    +E+L LF      G + D       +   A+ A +
Sbjct: 223 FERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALV 282

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           +QG+++H   I+    T +   NSI+D Y + G  D A ++F  +   +  SW T++ G 
Sbjct: 283 EQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGL 342

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
           G  G    A+ LFE MR  GV  D V+Y+A+L+ACSH GLV++ ++YF  ++ D +V+P 
Sbjct: 343 GKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPK 402

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HYACMVDLLGRAG + +A  LI+ +P+EP   +W  LL ACR++ +V +G  A + L 
Sbjct: 403 AEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLL 462

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
            +   +   Y+ LSN+ AEAG+W E  KVR+ M+ R  KK  GCSWV+   EV  F
Sbjct: 463 AMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKEVHFF 518



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 192/438 (43%), Gaps = 60/438 (13%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSV 59
           MY K      A  +F  + ++N+VSW A++  F ++      L+L+ EM   +E  PN  
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           TL+  L AC        G  IH   +R G      + ++L  +Y+K G +  A+ VF+ +
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGA 120

Query: 120 FRDE--VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH--DVVSFMGAISACANLAAIK 175
                  ++N ++ GY+      ++L +F EMR    +H  D  +F   + AC+ L A +
Sbjct: 121 GLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATR 180

Query: 176 QGKEIHGVTIRKHLHT--HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           +G ++H         T  +  +A +++D Y +  R+ +A ++F+ L  K+   W  +++G
Sbjct: 181 EGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVG 240

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-------------- 279
           +   G+V  A+ LF      G   D     +++   +   LVE+G+              
Sbjct: 241 HAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTD 300

Query: 280 ---------------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
                                + F EM+A    P  + +  MV+ LG+ GL  +AV L +
Sbjct: 301 VSAGNSIVDMYLKCGLPDEAERMFREMRA----PNVVSWTTMVNGLGKHGLGREAVALFE 356

Query: 319 NL---PVEPDANIWGALLGACRIYGNVE-----LGAWAAEHLFMLKPQHCGYYILLSNMY 370
            +    VEPD   + ALL AC   G V+           +     K +H   Y  + ++ 
Sbjct: 357 EMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEH---YACMVDLL 413

Query: 371 AEAGKWDEASKVRELMKS 388
             AG+  EA   R+L+++
Sbjct: 414 GRAGELREA---RDLIRT 428


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/406 (34%), Positives = 237/406 (58%), Gaps = 3/406 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN--SVTLTNVLPAC 68
           A  LF  I   NI SWN+M+   +Q++   K   ++    +   +PN  + T+  VL AC
Sbjct: 43  ARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKAC 102

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
           +    L  G+++HA +++ G     F+  AL + YAKC  + LA  VF+ I+ R+ V+++
Sbjct: 103 SIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWS 162

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            +I GY++    +E+L LF +M+  G+  D V+ +  ISACA   A+  GK +H    ++
Sbjct: 163 TMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQ 222

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            + T L ++ ++++ Y + G I+ A ++FD +PVKD+ +W+++I+G  + G  + A+  F
Sbjct: 223 LIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEF 282

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
             M E  V  + V++I +L+AC+H GLV +G++Y+  M    + P+   Y CMVDLL RA
Sbjct: 283 FRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRA 342

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
            L+EDA  L++ +P+ P+  IW  LL  C+   N++     A+ L  L+P +   YILLS
Sbjct: 343 SLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLS 402

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           N+YA   +W++ S+VR+ MK    K  PGCS ++    V +FV+ D
Sbjct: 403 NLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGD 448



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 129/234 (55%), Gaps = 2/234 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      AS +F  I ++N+V+W+ M++ +A+  L  +AL L R+M      P+ VT+
Sbjct: 137 YAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTM 196

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            +V+ ACA    L  GK +HA I ++ +  DL L+ AL +MYAKCGC+  A+ VF+ +  
Sbjct: 197 VSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPV 256

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D  +++ +IVG +      ++L  F  M    +K + V+F+G +SACA+   + +G+  
Sbjct: 257 KDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRY 316

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILG 233
               +   +   + +   ++D   R+  ++ A  + + +P+  +   W TL++G
Sbjct: 317 WSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVG 370



 Score = 44.7 bits (104), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 46/105 (43%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F  +  K+  +W++M+   A N L   AL+    M      PN VT
Sbjct: 237 MYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVT 296

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK 105
              VL ACA    +  G+   + ++  G+   + L   + D+  +
Sbjct: 297 FIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCR 341


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 163/473 (34%), Positives = 238/473 (50%), Gaps = 72/473 (15%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
             Y +  + + A  LF  I   NI  W  +    A+     +AL    EM      PN   
Sbjct: 847  FYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFV 906

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG------------- 107
            L ++L AC      R G+ +H  I++     D ++ +AL  MY+KCG             
Sbjct: 907  LPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIV 966

Query: 108  ----------------------CLNLAQNVFNISFR-DEVSYNILIVGYSQTSDCSESLS 144
                                   LBL Q +     + + VS+N LI G+SQ  D S    
Sbjct: 967  DKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSE 1026

Query: 145  LFSEMRLLGMKHDVVSFMGAIS-----------------------------------ACA 169
            +F  M   G++ DVVS+   IS                                   AC 
Sbjct: 1027 VFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACT 1086

Query: 170  NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
            N+A ++ GKEIHG  +   +   ++V ++++D Y + G I  A  +F  +P +++ +WN+
Sbjct: 1087 NVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNS 1146

Query: 230  LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD- 288
            LI GY   G  + AI LF  M E     D +++ A+L ACSH G+VE G+  F +MQ   
Sbjct: 1147 LIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKY 1206

Query: 289  SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWA 348
             ++P   HYACMVDLLGRAG + +A  LIK +PVEPD  +WGALLGACR +GN+EL   A
Sbjct: 1207 RIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVA 1266

Query: 349  AEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQ 401
            AEHLF L+P+  G  +LLSN+YA+AG+W  A+K++++MK R+  K PGCSW++
Sbjct: 1267 AEHLFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  271 bits (692), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 141/426 (33%), Positives = 238/426 (55%), Gaps = 9/426 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN---RLELKALQLVREMPIHNEFPN 57
           +Y+K     EA  +F ++ ++NI+SW A +  F Q+   +  LK   ++RE  I    PN
Sbjct: 258 LYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIE---PN 314

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
             T + VL +C        G+  H ++I+KG+   +F+  A+ DMY+  G ++ A+  F 
Sbjct: 315 EFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFK 374

Query: 118 ISFR--DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
              R    VS+N LI GY       +++  F  M    +  +  ++     AC++  ++ 
Sbjct: 375 QMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLA 434

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
              +IH   I+ ++ ++L VA+S+++ YT+ G ++ A ++F  +   D  SWN++I  Y 
Sbjct: 435 TTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYS 494

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
             G+   AI L   M E+G      +++ +L+ACSH GLV++G+++F  M  D S++P E
Sbjct: 495 QNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEE 554

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            H +CMVD+LGRAG +E+A+  IK L ++P A+IW  LL ACR   N+++  + AE +  
Sbjct: 555 THCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILD 614

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           L+P     Y+ LSNMYAE G+W +A   R LM+ +E  K PGCSW++  +++  F  +D+
Sbjct: 615 LEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVNNKMYKFFSHDK 674

Query: 415 MKTFTP 420
                P
Sbjct: 675 AHPEMP 680



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 175/358 (48%), Gaps = 9/358 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  ++  +   +  + N +++ +A+N   ++A Q+  ++      PN  T
Sbjct: 157 MYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYT 216

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            + +L  C     ++ GK++HA +++     +  + NAL  +Y+KCG +  A+ VF ++ 
Sbjct: 217 YSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLR 276

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ +S+   I G+ Q  D  ++L  FS MR  G++ +  +F   +++C  +     G+ 
Sbjct: 277 QRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRM 336

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL-PVKDSASWNTLILGYGMLG 238
            H   I+K + + +FV  +I+D Y+  G +D A K F  +     + SWN LI GY +  
Sbjct: 337 FHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNE 396

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
           +++ A+  F  M ++ V  +  +Y  I  ACS    +    +    +   +V+      +
Sbjct: 397 KIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVAS 456

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
            +++   + G +E+AV++   +  + D   W +++ A    G+     W A  +F+L+
Sbjct: 457 SLIEAYTQCGSLENAVQVFTQIS-DADVVSWNSIIKAYSQNGD----PWKA--IFLLR 507



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 136/282 (48%), Gaps = 1/282 (0%)

Query: 55  FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
           FP+   + + L  C R   +  G+  H  +++ GL  D F+  +L DMYAKCG ++ A  
Sbjct: 110 FPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVR 169

Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
           V++ ++  D  + N LI  Y++     ++  +F ++  +G + +  ++   ++ C  ++A
Sbjct: 170 VYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISA 229

Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           I++GK++H   ++    +   V N++L  Y++ G ++ A  +F+ L  ++  SW   I G
Sbjct: 230 IQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASING 289

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
           +   G+   A+  F  MRE G+  +  ++  +L +C        G+ +  ++    +   
Sbjct: 290 FYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASG 349

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
                 ++D+    G M++A K  K +        W AL+  
Sbjct: 350 VFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAG 391



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 164/357 (45%), Gaps = 16/357 (4%)

Query: 44   QLVREMPIHNEFPNSV-TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDM 102
            ++ R +  H  F +S  T    +   AR   L  G+ +HA ++  GL    +    L   
Sbjct: 788  RVYRNISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSF 847

Query: 103  YAKCGCLNLAQNVFNISFRDEVSYNILIVGY-SQTSDCSESLSLFSEMRLLGMKHDVVSF 161
            Y +CG L+ A+ +F+      +   I++ G  ++     E+LS FSEM+  G++ +    
Sbjct: 848  YTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVL 907

Query: 162  MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
               + AC +L+  + G+ +H V ++    +  ++ ++++  Y++ G ++ A ++FD +  
Sbjct: 908  PSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVD 967

Query: 222  KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
            KD    N ++ GY   G V  A+BL + M++ GV  + VS+  ++   S  G      + 
Sbjct: 968  KDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEV 1027

Query: 282  FDEMQADSVKPTEMHYACMVDLLGRAGLME--------DAVKLIKNLPVEPDANIWGALL 333
            F  M A+ V+P  + +  ++     +G ++        DA K + +    P +    +LL
Sbjct: 1028 FRLMTANGVEPDVVSWTSVI-----SGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLL 1082

Query: 334  GACRIYGNVELGAWAAEHLFMLKPQHCGYY-ILLSNMYAEAGKWDEASKVRELMKSR 389
             AC    N+  G     +  ++  +   Y    L +MYA+ G   EA  +  +M  R
Sbjct: 1083 PACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPER 1139


>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 164/473 (34%), Positives = 238/473 (50%), Gaps = 72/473 (15%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            Y +  + + A  LF  I   NI  W  +    A+     +AL    EM      PN   
Sbjct: 71  FYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFV 130

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG------------- 107
           L ++L AC      R G+ +H  I++     D ++ +AL  MY+KCG             
Sbjct: 131 LPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIV 190

Query: 108 ----------------------CLNLAQNVFNISFR-DEVSYNILIVGYSQTSDCSESLS 144
                                  LNL Q +     + + VS+N LI G+SQ  D S    
Sbjct: 191 DKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSE 250

Query: 145 LFSEMRLLGMKHDVVSFMGAIS-----------------------------------ACA 169
           +F  M   G++ DVVS+   IS                                   AC 
Sbjct: 251 VFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACT 310

Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
           N+A ++ GKEIHG  +   +   ++V ++++D Y + G I  A  +F  +P +++ +WN+
Sbjct: 311 NVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNS 370

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD- 288
           LI GY   G  + AI LF  M E     D +++ A+L ACSH G+VE G+  F +MQ   
Sbjct: 371 LIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKY 430

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWA 348
            ++P   HYACMVDLLGRAG + +A  LIK +PVEPD  +WGALLGACR +GN+EL   A
Sbjct: 431 RIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVA 490

Query: 349 AEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQ 401
           AEHLF L+P+  G  +LLSN+YA+AG+W  A+K++++MK R+  K PGCSW++
Sbjct: 491 AEHLFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 543



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 164/357 (45%), Gaps = 16/357 (4%)

Query: 44  QLVREMPIHNEFPNSV-TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDM 102
           ++ R +  H  F +S  T    +   AR   L  G+ +HA ++  GL    +    L   
Sbjct: 12  RVYRNISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSF 71

Query: 103 YAKCGCLNLAQNVFNISFRDEVSYNILIVGY-SQTSDCSESLSLFSEMRLLGMKHDVVSF 161
           Y +CG L+ A+ +F+      +   I++ G  ++     E+LS FSEM+  G++ +    
Sbjct: 72  YTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVL 131

Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
              + AC +L+  + G+ +H V ++    +  ++ ++++  Y++ G ++ A ++FD +  
Sbjct: 132 PSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVD 191

Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
           KD    N ++ GY   G V  A+NL + M++ GV  + VS+  ++   S  G      + 
Sbjct: 192 KDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEV 251

Query: 282 FDEMQADSVKPTEMHYACMVDLLGRAGLME--------DAVKLIKNLPVEPDANIWGALL 333
           F  M A+ V+P  + +  ++     +G ++        DA K + +    P +    +LL
Sbjct: 252 FRLMTANGVEPDVVSWTSVI-----SGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLL 306

Query: 334 GACRIYGNVELGAWAAEHLFMLKPQHCGYY-ILLSNMYAEAGKWDEASKVRELMKSR 389
            AC    N+  G     +  ++  +   Y    L +MYA+ G   EA  +  +M  R
Sbjct: 307 PACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPER 363


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/408 (36%), Positives = 239/408 (58%), Gaps = 4/408 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     EA  +F+ + ++++VSW  M+  +  N     AL L + M   +  PN VT
Sbjct: 268 MYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVT 327

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L +VL ACA  + L+ G+ +H   IR+ L  ++ +  AL DMYAKC  +NL+  VF+  S
Sbjct: 328 LASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXS 387

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +    +N +I G        +++ LF +M +  +  +  +    + A A L  ++Q + 
Sbjct: 388 KQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARN 447

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS--ASWNTLILGYGML 237
           +HG  IR    + + VA  ++D Y++ G ++ A+ IF+ +P KD    +W+ +I GYGM 
Sbjct: 448 MHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMH 507

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-H 296
           G  +TAI+LF+ M + GV  + +++ +IL ACSH GLV++G   F  M  D+       H
Sbjct: 508 GHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDH 567

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           Y C++DLLGRAG +E+A +LI+ +   P+  +WGALLG+C I+ NVELG  AA+ LF L+
Sbjct: 568 YTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELE 627

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRD 404
           P + G Y+LL+N+Y+  G+W +A  VR +M +   +K P  S ++ R+
Sbjct: 628 PGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEVRN 675



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 174/356 (48%), Gaps = 24/356 (6%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY        A  +F  + E+ +VSWN M+  + +N    +AL +   M      P+  T
Sbjct: 167 MYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCAT 226

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + +VLP C+    L  G+ +HA +  K L  D+ + N+L DMYAKCG ++ AQ +F  + 
Sbjct: 227 VVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMD 286

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+  ++ GY    D   +L L   M+   +K + V+    +SACA+L ++K G+ 
Sbjct: 287 KRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRC 346

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  IR+ L + + V  +++D Y +   ++L+ ++F     + +A WN +I G    G 
Sbjct: 347 LHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGL 406

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQAD 288
              AI LF+ M  + V  +  +  ++L A +           HG L+  G  +   ++  
Sbjct: 407 SRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSG--FLSRIEVA 464

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP-VEPDANIWGALLGACRIYGNVE 343
           ++         ++D+  + G +E A  +   +P  + D   W A++    ++G+ E
Sbjct: 465 TI---------LIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGE 511



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 145/273 (53%), Gaps = 6/273 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL-VREMPIHNEFPNSVT 60
           YA       A  LF  +   ++ SWNAM+  +  + L   AL L V+ +     +P++ T
Sbjct: 66  YAMCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYT 125

Query: 61  LTNVLPACARGHFLRP--GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
              V+ AC  G +L P  G  IHAR +  G + D F+ N+L  MY  CG + +A+ VF++
Sbjct: 126 YPFVIKAC--GDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDL 183

Query: 119 -SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              R  VS+N +I GY +     E+L +F  M   G++ D  + +  +  C+ L  ++ G
Sbjct: 184 MRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVG 243

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           + +H +   K+L   + V NS+LD Y + G +D A  IF  +  +D  SW T++ GY + 
Sbjct: 244 RRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILN 303

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
           G+  +A+ L + M+ + V  + V+  ++L+AC+
Sbjct: 304 GDARSALLLCQMMQFESVKPNFVTLASVLSACA 336



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 126/257 (49%), Gaps = 7/257 (2%)

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGL---NFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           ++L  C     +   K+IHA  I  GL    +   L ++L   YA CGC   A+ +F+  
Sbjct: 23  SLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFD-E 81

Query: 120 FRDE--VSYNILIVGYSQTSDCSESLSLFSEMRLLGMK-HDVVSFMGAISACANLAAIKQ 176
            R+    S+N +I  Y+ +    ++L LF +M   G +  D  ++   I AC +    + 
Sbjct: 82  LRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEM 141

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G  IH  T+     +  FV NS++  Y   G +++A ++FD +  +   SWNT+I GY  
Sbjct: 142 GALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFK 201

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G V  A+ +F+ M   G+  D  + +++L  CS+   +E G++    ++  ++      
Sbjct: 202 NGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISV 261

Query: 297 YACMVDLLGRAGLMEDA 313
           +  ++D+  + G M++A
Sbjct: 262 WNSLLDMYAKCGNMDEA 278



 Score = 38.5 bits (88), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 105/274 (38%), Gaps = 49/274 (17%)

Query: 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF---VANSILDFYTRSGRIDLANKIFD 217
           +   +  C +  +I   K+IH  TI   L +  +   + +S+   Y   G    A K+FD
Sbjct: 21  YQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFD 80

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACS------ 270
            L      SWN +I  Y   G    A+ LF  M   G  + D  +Y  ++ AC       
Sbjct: 81  ELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPE 140

Query: 271 -----------------------------HGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
                                        + G +E  ++ FD M+    + T + +  M+
Sbjct: 141 MGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMR----ERTLVSWNTMI 196

Query: 302 DLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK-- 356
           +   + G +++A+ +   +    +EPD     ++L  C     +E+G      L  +K  
Sbjct: 197 NGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGR-RVHALVEVKNL 255

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390
            +    +  L +MYA+ G  DEA  +   M  R+
Sbjct: 256 GEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRD 289


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 146/409 (35%), Positives = 247/409 (60%), Gaps = 6/409 (1%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF--PNS 58
            +Y+K     +A  +F ++ EK++V+W ++++   +N    +AL++  +M   ++   P+S
Sbjct: 916  LYSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDS 975

Query: 59   VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
              +T+V+ ACA    L  G ++H  +I+ G   ++F+ ++L D+Y+KCG   +A  VF  
Sbjct: 976  DIMTSVINACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFT- 1034

Query: 119  SFRDE--VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            S R E  V++N +I  YS+ +    S+ LF+ M   G+  D VS    + A ++ A++ +
Sbjct: 1035 SMRPENIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLK 1094

Query: 177  GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            GK +HG T+R  + +   + N+++D Y + G    A  IF  +  K   +WN +I GYG 
Sbjct: 1095 GKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGS 1154

Query: 237  LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
             G+  TA++LF+ +++ G   D V+++++++AC+H G VE+GK +F+ M+ D  ++P   
Sbjct: 1155 HGDCRTALSLFDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFEIMKQDYGIEPKME 1214

Query: 296  HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
            HYA MVDLLGRAG +E+A   IK +P E D++IW  LL A R + NVELG  +AE L  +
Sbjct: 1215 HYANMVDLLGRAGRLEEAYSFIKAMPTEADSSIWLCLLSASRTHHNVELGILSAEKLLRM 1274

Query: 356  KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRD 404
            +P+    Y+ L N+Y EAG  +EA+K+   MK R  +K PGCSW++  D
Sbjct: 1275 EPERGSTYVQLINLYMEAGLKNEAAKLLGEMKERGLQKQPGCSWIEVSD 1323



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 163/324 (50%), Gaps = 5/324 (1%)

Query: 1    MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
            MY+K     EA  +F  + +K +  WNAMVA + +N     AL+L   M   +  P+S T
Sbjct: 815  MYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFT 874

Query: 61   LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
            L+NV+  C+       GK +HA + ++ +     + +AL  +Y+KCGC   A  VF ++ 
Sbjct: 875  LSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSME 934

Query: 120  FRDEVSYNILIVGYSQTSDCSESLSLFSEMR--LLGMKHDVVSFMGAISACANLAAIKQG 177
             +D V++  LI G  +     E+L +F +M+     +K D       I+ACA L A+  G
Sbjct: 935  EKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFG 994

Query: 178  KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
             ++HG  I+     ++FV +S++D Y++ G  ++A K+F  +  ++  +WN++I  Y   
Sbjct: 995  LQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWNSMISCYSRN 1054

Query: 238  GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
               + +I LF  M   G+  D VS  ++L A S    + KGK          + P++ H 
Sbjct: 1055 NLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGI-PSDTHL 1113

Query: 298  A-CMVDLLGRAGLMEDAVKLIKNL 320
               ++D+  + G  + A  + K +
Sbjct: 1114 KNALIDMYVKCGFSKYAENIFKKM 1137



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 160/326 (49%), Gaps = 8/326 (2%)

Query: 18  IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPA-CARGHFLRP 76
           ++ +++   N+M+  + + R   + +   R M +    P++ +L+ V+   C  G+F R 
Sbjct: 627 VSARDVTVCNSMIDGYFKFRRFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGNFRRE 686

Query: 77  -GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDE---VSYNILIVG 132
            GK+IH  ++R  L+ D FL  AL DMY K G    A  VF +   D+   V +N++IVG
Sbjct: 687 DGKQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVF-VEIEDKSNVVLWNVMIVG 745

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           +  +  C  SL L+   +   +K    SF GA+ AC+       G++IH   ++  L   
Sbjct: 746 FGGSEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDND 805

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
            +V+ S+L  Y++ G +  A  +F C+  K    WN ++  Y       +A+ LF  MR+
Sbjct: 806 PYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQ 865

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
             V  D  +   +++ CS  GL + GK    E+    ++ T    + ++ L  + G   D
Sbjct: 866 KSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTD 925

Query: 313 AVKLIKNLPVEPDANIWGALL-GACR 337
           A  + K++  E D   WG+L+ G C+
Sbjct: 926 AYLVFKSME-EKDMVAWGSLISGLCK 950



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 149/323 (46%), Gaps = 15/323 (4%)

Query: 25  SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV-TLTNVLPACARGHFLRPGKEIHAR 83
           S N+ +    Q    L+AL L  +    +    SV T  ++L AC+    L  GK IH  
Sbjct: 527 SVNSGIRALIQKGEYLQALHLYTKHDGSSPLWTSVFTFPSLLKACSSLTNLSSGKTIHGS 586

Query: 84  IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN------ISFRDEVSYNILIVGYSQTS 137
           II  G  +D F+  +L +MY KCG L+ A  VF+      +S RD    N +I GY +  
Sbjct: 587 IIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSGVSARDVTVCNSMIDGYFKFR 646

Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ--GKEIHGVTIRKHLHTHLFV 195
              E +  F  M +LG++ D  S    +S        ++  GK+IHG  +R  L    F+
Sbjct: 647 RFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGNFRREDGKQIHGYMLRNSLDGDSFL 706

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSAS---WNTLILGYGMLGEVDTAINLFEAMRE 252
             +++D Y + G    A ++F  + ++D ++   WN +I+G+G     ++++ L+   + 
Sbjct: 707 KTALIDMYFKFGLSTDAWRVF--VEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAKS 764

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
           + V     S+   L ACS       G++   ++    +         ++ +  + G++ +
Sbjct: 765 NSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGE 824

Query: 313 AVKLIKNLPVEPDANIWGALLGA 335
           A + + +  V+    IW A++ A
Sbjct: 825 A-ETVFSCVVDKRLEIWNAMVAA 846


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/403 (34%), Positives = 232/403 (57%), Gaps = 9/403 (2%)

Query: 14  LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
           L H +  +++VSW AM++ + QN    +A+ L   M      PN  T + +L       F
Sbjct: 364 LMHGV--QSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV-QHAVF 420

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           +    EIHA +I+        +  AL D + K G ++ A  VF  I  +D ++++ ++ G
Sbjct: 421 I---SEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAG 477

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC-ANLAAIKQGKEIHGVTIRKHLHT 191
           Y+Q  +  E+  +F ++   G+K +  +F   I+AC A  A+++QGK+ H   I+  L+ 
Sbjct: 478 YAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNN 537

Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
            L V++S++  Y + G I+ A++IF     +D  SWN++I GY   G+   A+ +FE M+
Sbjct: 538 ALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQ 597

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYACMVDLLGRAGLM 310
           +  +  D +++I +++AC+H GLV KG+ YF+ M  D  + PT  HY+CM+DL  RAG++
Sbjct: 598 KRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGML 657

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370
             A+ +I  +P  P A +W  +L A R++ N+ELG  AAE +  L+PQH   Y+LLSN+Y
Sbjct: 658 GKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIY 717

Query: 371 AEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           A AG W E   VR+LM  R  KK PG SW++ +++   F+  D
Sbjct: 718 AAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGD 760



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 170/352 (48%), Gaps = 15/352 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K+    +   +F  + ++++VSWN+++  ++ NR   +  +L   M +    P+  T
Sbjct: 146 MYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYT 205

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           ++ V+ A A    +  G +IHA +++ G   +  + N+L  M +K G L  A+ VF N+ 
Sbjct: 206 VSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNME 265

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+N +I G+       E+   F+ M+L G K    +F   I +CA+L  +   + 
Sbjct: 266 NKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRV 325

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL-PVKDSASWNTLILGYGMLG 238
           +H  T++  L T+  V  +++   T+   ID A  +F  +  V+   SW  +I GY   G
Sbjct: 326 LHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNG 385

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
           + D A+NLF  MR +GV  +  +Y  ILT         +   +  E+ A+ +K      +
Sbjct: 386 DTDQAVNLFSLMRREGVKPNHFTYSTILTV--------QHAVFISEIHAEVIKTNYEKSS 437

Query: 299 ----CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGA 346
                ++D   + G + DAVK+ + +  + D   W A+L      G  E  A
Sbjct: 438 SVGTALLDAFVKIGNISDAVKVFELIETK-DVIAWSAMLAGYAQAGETEEAA 488



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 134/268 (50%), Gaps = 1/268 (0%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           + S P  A  LF     +++   N ++  +++     +AL L   +      P+S T++ 
Sbjct: 48  RDSDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSC 107

Query: 64  VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
           VL  CA       G+++H + ++ GL   L + N+L DMY K G +   + VF+ +  RD
Sbjct: 108 VLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRD 167

Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
            VS+N L+ GYS      +   LF  M++ G + D  +    I+A AN  A+  G +IH 
Sbjct: 168 VVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHA 227

Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
           + ++    T   V NS++   ++SG +  A  +FD +  KDS SWN++I G+ + G+   
Sbjct: 228 LVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLE 287

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACS 270
           A   F  M+  G      ++ +++ +C+
Sbjct: 288 AFETFNNMQLAGAKPTHATFASVIKSCA 315



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 127/235 (54%), Gaps = 3/235 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           + K    ++A  +F  I  K++++W+AM+A +AQ     +A ++  ++      PN  T 
Sbjct: 447 FVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTF 506

Query: 62  TNVLPAC-ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
            +++ AC A    +  GK+ HA  I+  LN  L ++++L  +YAK G +  A  +F    
Sbjct: 507 CSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQK 566

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD VS+N +I GY+Q     ++L +F EM+   ++ D ++F+G ISACA+   + +G+ 
Sbjct: 567 ERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQN 626

Query: 180 IHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
              + I   H++  +   + ++D Y+R+G +  A  I + +P   +A+   ++L 
Sbjct: 627 YFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLA 681



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 23/129 (17%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK      A  +F    E+++VSWN+M++ +AQ+    KAL++  EM   N   +++T
Sbjct: 548 LYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAIT 607

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTN------------ALTDMYAKCGC 108
              V+ ACA           HA ++ KG N+   + N             + D+Y++ G 
Sbjct: 608 FIGVISACA-----------HAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGM 656

Query: 109 LNLAQNVFN 117
           L  A ++ N
Sbjct: 657 LGKAMDIIN 665


>gi|414887787|tpg|DAA63801.1| TPA: hypothetical protein ZEAMMB73_367984 [Zea mays]
          Length = 711

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 147/402 (36%), Positives = 231/402 (57%), Gaps = 2/402 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K +R   A+ LF +I  K++ SW+ ++A  +QNR+   ++ L  EM      PNS T
Sbjct: 310 MYCKCARLDMAASLFWSIDHKDVFSWSTIIAGHSQNRIYNVSVSLFTEMVASGIKPNSTT 369

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + ++LP+ +    LR GKEIH   +R  L    FL +AL D Y + G +  AQ VF    
Sbjct: 370 IASILPSISELRLLRYGKEIHCFSLRNRLEHSEFLASALIDFYCRQGYIRDAQIVFEFKP 429

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
           + D V  N +I GY    D   +L L   +   G++ D V+ +  +  C   + + QGKE
Sbjct: 430 KNDLVVLNSMIRGYVVNKDSESALRLLRALLKEGLRPDHVTVVSVLPLCNQPSRLLQGKE 489

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   IR ++ +   V N++ D Y + G +++ANKIF  +  +++ ++NTLI   G  G 
Sbjct: 490 LHAYAIRHNISSCFSVTNALTDMYCKCGCLEIANKIFLLMTERNTVTYNTLISSLGKHGH 549

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            D A  LF+ M+ DGV  D V+++A+L+ CSHGGL++KG  ++D M  D ++ P + HY+
Sbjct: 550 ADQAFILFDLMKRDGVSPDKVTFVALLSCCSHGGLIDKGLCFYDSMLRDYNIPPDKEHYS 609

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           C+VDL  R+G ++DA   I NL   P+ ++ G LL ACR +  +++    AE +F   P 
Sbjct: 610 CIVDLYSRSGKLDDAWSFIANLQEVPEIDVLGCLLSACRDHHRMDIAELVAERIFEQNPN 669

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400
             GY+ILLSN+YA AG W E +++R +++ R  KK  G S +
Sbjct: 670 DPGYHILLSNVYASAGMWSEVTRIRTMIEERSLKKRTGNSLI 711



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 208/422 (49%), Gaps = 49/422 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M+AK     EA  +F ++  +++ SW AM+    +    L+ + L++ M      P+S+ 
Sbjct: 209 MFAKCGCLGEARNMFESMGVRDLASWTAMIGGAVRGGDWLEVMTLLKRMKSEGFRPDSMI 268

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
              V+PAC +   LR G  +H   ++ G+  D+ + NAL DMY KC  L++A ++F +I 
Sbjct: 269 FATVIPACGKVKELRTGMALHGYAVKCGVGDDICVPNALVDMYCKCARLDMAASLFWSID 328

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D  S++ +I G+SQ    + S+SLF+EM   G+K +  +    + + + L  ++ GKE
Sbjct: 329 HKDVFSWSTIIAGHSQNRIYNVSVSLFTEMVASGIKPNSTTIASILPSISELRLLRYGKE 388

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IH  ++R  L    F+A++++DFY R G I  A  +F+  P  D    N++I GY +  +
Sbjct: 389 IHCFSLRNRLEHSEFLASALIDFYCRQGYIRDAQIVFEFKPKNDLVVLNSMIRGYVVNKD 448

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP------- 292
            ++A+ L  A+ ++G+  D V+ +++L  C+    + +GK    E+ A +++        
Sbjct: 449 SESALRLLRALLKEGLRPDHVTVVSVLPLCNQPSRLLQGK----ELHAYAIRHNISSCFS 504

Query: 293 -----TEMHYAC-----------------------MVDLLGRAGLMEDA---VKLIKNLP 321
                T+M+  C                       ++  LG+ G  + A     L+K   
Sbjct: 505 VTNALTDMYCKCGCLEIANKIFLLMTERNTVTYNTLISSLGKHGHADQAFILFDLMKRDG 564

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK----PQHCGYYILLSNMYAEAGKWD 377
           V PD   + ALL  C   G ++ G    +   ML+    P    +Y  + ++Y+ +GK D
Sbjct: 565 VSPDKVTFVALLSCCSHGGLIDKGLCFYDS--MLRDYNIPPDKEHYSCIVDLYSRSGKLD 622

Query: 378 EA 379
           +A
Sbjct: 623 DA 624



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 155/317 (48%), Gaps = 18/317 (5%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQ----LVREMPIHNEFPNSVTLTNV 64
             A  +F  +  +N  +WNA++          +AL+    +VR+  +     +  T   V
Sbjct: 111 GHAVRVFDGMPTRNSFAWNAVIKGLVDAGRFSEALRWYWDMVRDGSV---VADRFTYPPV 167

Query: 65  LPACARGHFLRPGKEIH-------ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF- 116
           L ACA    +  G+++        AR I KG   ++F+  AL DM+AKCGCL  A+N+F 
Sbjct: 168 LKACAALGEVEQGRKVQENVETDIARGIAKG---NVFVQCALVDMFAKCGCLGEARNMFE 224

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
           ++  RD  S+  +I G  +  D  E ++L   M+  G + D + F   I AC  +  ++ 
Sbjct: 225 SMGVRDLASWTAMIGGAVRGGDWLEVMTLLKRMKSEGFRPDSMIFATVIPACGKVKELRT 284

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G  +HG  ++  +   + V N+++D Y +  R+D+A  +F  +  KD  SW+T+I G+  
Sbjct: 285 GMALHGYAVKCGVGDDICVPNALVDMYCKCARLDMAASLFWSIDHKDVFSWSTIIAGHSQ 344

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
               + +++LF  M   G+  +  +  +IL + S   L+  GK+       + ++ +E  
Sbjct: 345 NRIYNVSVSLFTEMVASGIKPNSTTIASILPSISELRLLRYGKEIHCFSLRNRLEHSEFL 404

Query: 297 YACMVDLLGRAGLMEDA 313
            + ++D   R G + DA
Sbjct: 405 ASALIDFYCRQGYIRDA 421



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 13/182 (7%)

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR--SGRIDLANKIFDCLPVKDSASWNTL 230
           A+ + + +H   + +  H    +A  ++  Y R   G +  A ++FD +P ++S +WN +
Sbjct: 72  ALTEVRRLHAALLVRGYHRSTVLAAQLVRAYARMRDGGLGHAVRVFDGMPTRNSFAWNAV 131

Query: 231 ILGYGMLGEVDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD- 288
           I G    G    A+  +  M  DG V  D  +Y  +L AC+  G VE+G+K  + ++ D 
Sbjct: 132 IKGLVDAGRFSEALRWYWDMVRDGSVVADRFTYPPVLKACAALGEVEQGRKVQENVETDI 191

Query: 289 --SVKPTEMHYAC-MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
              +    +   C +VD+  + G + +A  + +++ V  D   W A++G     G V  G
Sbjct: 192 ARGIAKGNVFVQCALVDMFAKCGCLGEARNMFESMGVR-DLASWTAMIG-----GAVRGG 245

Query: 346 AW 347
            W
Sbjct: 246 DW 247


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/416 (36%), Positives = 229/416 (55%), Gaps = 7/416 (1%)

Query: 1   MYAKSSRPAEASYLFHNIA-EKNIVSWNAMVANFAQNRLELKALQLVREMPIH--NEFPN 57
           +Y+K  R  +A  +F        I +WNAMV+ +A       AL + REM  H     P+
Sbjct: 150 VYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPD 209

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNV 115
             T  ++L AC+     R G ++HA +   G +   +  L  AL DMY KC  L +A  V
Sbjct: 210 EFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQV 269

Query: 116 F-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           F  +  ++ + +  ++VG++Q    +E+L LF      G + D       +   A+ A +
Sbjct: 270 FERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALV 329

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           +QG+++H   I+    T +   NSI+D Y + G  D A ++F  +   +  SW T++ G 
Sbjct: 330 EQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGL 389

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
           G  G    A+ LFE MR  GV  D V+Y+A+L+ACSH GLV++ ++YF  ++ D +V+P 
Sbjct: 390 GKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPK 449

Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
             HYACMVDLLGRAG + +A  LI+ +P+EP   +W  LL ACR++ +V +G  A + L 
Sbjct: 450 AEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLL 509

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
            +   +   Y+ LSN+ AEAG+W E  KVR+ M+ R  KK  GCSWV+   EV  F
Sbjct: 510 AMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKEVHFF 565



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 192/438 (43%), Gaps = 60/438 (13%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FPNSV 59
           MY K      A  +F  + ++N+VSW A++  F ++      L+L+ EM   +E  PN  
Sbjct: 48  MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 107

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
           TL+  L AC        G  IH   +R G      + ++L  +Y+K G +  A+ VF+ +
Sbjct: 108 TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGA 167

Query: 120 FRDE--VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH--DVVSFMGAISACANLAAIK 175
                  ++N ++ GY+      ++L +F EMR    +H  D  +F   + AC+ L A +
Sbjct: 168 GLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATR 227

Query: 176 QGKEIHGVTIRKHLHT--HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           +G ++H         T  +  +A +++D Y +  R+ +A ++F+ L  K+   W  +++G
Sbjct: 228 EGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVG 287

Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-------------- 279
           +   G+V  A+ LF      G   D     +++   +   LVE+G+              
Sbjct: 288 HAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTD 347

Query: 280 ---------------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
                                + F EM+A    P  + +  MV+ LG+ GL  +AV L +
Sbjct: 348 VSAGNSIVDMYLKCGLPDEAERMFREMRA----PNVVSWTTMVNGLGKHGLGREAVALFE 403

Query: 319 NL---PVEPDANIWGALLGACRIYGNVE-----LGAWAAEHLFMLKPQHCGYYILLSNMY 370
            +    VEPD   + ALL AC   G V+           +     K +H   Y  + ++ 
Sbjct: 404 EMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEH---YACMVDLL 460

Query: 371 AEAGKWDEASKVRELMKS 388
             AG+  EA   R+L+++
Sbjct: 461 GRAGELREA---RDLIRT 475



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 114/232 (49%), Gaps = 5/232 (2%)

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           +  +L A AR   LR G ++H  I + G   D  L N L DMY KCG L+LA  VF  + 
Sbjct: 7   IAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMR 66

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGK 178
            R+ VS+  L+VG+ +  D +  L L  EMR       +  +   ++ AC  +     G 
Sbjct: 67  DRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGV 126

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS-ASWNTLILGYGML 237
            IHG+ +R     H  VA+S++  Y++ GRI  A ++FD   +    A+WN ++ GY   
Sbjct: 127 GIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHA 186

Query: 238 GEVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQA 287
           G    A+ +F  MR     + P   ++ ++L ACS  G   +G +    M A
Sbjct: 187 GHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTA 238


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/446 (31%), Positives = 240/446 (53%), Gaps = 37/446 (8%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  +F  I   N   WN ++  +A +     AL +  +M   +  P+  T T  L +C  
Sbjct: 61  AHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGS 120

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN------------- 117
              +  G++IH  +++ GL  DLF+ N L  +YA CGC+  A+++ +             
Sbjct: 121 FSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNAL 180

Query: 118 --------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157
                                  ++ VS+N +I GYS     SE L LF +M+  G+K D
Sbjct: 181 LSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPD 240

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
             + +  +SACA++ A+ QG+ +H    +  +    FVA +++D Y++ G I+ A ++F+
Sbjct: 241 NCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFN 300

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
               KD ++WN++I G    G    A+ +F  M  +G   + V+++ +L+ACS  GL+++
Sbjct: 301 SCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDE 360

Query: 278 GKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
           G++ F+ M     ++PT  HY CMVDLLGR GL+E+A +L++ +P +  + +W +LLGAC
Sbjct: 361 GREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGAC 420

Query: 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPG 396
           R +GNVEL    A+ L  L PQ    ++ LSNMYA  G+W +  +VR+ M+++  +K+PG
Sbjct: 421 RNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPG 480

Query: 397 CSWVQTRDEVQDFVVNDRM---KTFT 419
           CS ++    V +F+  + +   K FT
Sbjct: 481 CSMIEVDGTVYEFLAGEGLVSGKDFT 506



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 140/287 (48%), Gaps = 35/287 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRL-ELKALQLVREMPIHNEF---- 55
           +YA      +A +L   + E+++VSWNA+++ +A+  L EL + ++  E P+ N      
Sbjct: 152 LYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNA 211

Query: 56  ---------------------------PNSVTLTNVLPACARGHFLRPGKEIHARIIRKG 88
                                      P++ TL +VL ACA    L  G+ +HA I + G
Sbjct: 212 MITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNG 271

Query: 89  LNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILIVGYSQTSDCSESLSLFS 147
           ++ D F+  AL DMY+KCG +  A  VFN   R ++S +N +I G S       +L +FS
Sbjct: 272 ISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFS 331

Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH-LHTHLFVANSILDFYTRS 206
           EM + G K + V+F+  +SAC+    + +G+E+  + +  H +   +     ++D   R 
Sbjct: 332 EMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRV 391

Query: 207 GRIDLANKIFDCLPVKD-SASWNTLILGYGMLGEVDTAINLFEAMRE 252
           G ++ A ++   +P K+ S  W +L+      G V+ A  + + + E
Sbjct: 392 GLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLE 438



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 6/193 (3%)

Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
           I  A+ IF  +P  +S  WNT+I  Y      + A+ +F  M    V  D  ++   L +
Sbjct: 58  IPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKS 117

Query: 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328
           C     VE+G++    +    +         ++ L    G +EDA  L+  + +E D   
Sbjct: 118 CGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRM-LERDVVS 176

Query: 329 WGALLGACRIYGNVELGAWAAEHLFMLKP-QHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           W ALL A    G +EL   A+  +F   P ++   +  +   Y+ AG++ E   + E M+
Sbjct: 177 WNALLSAYAERGLMEL---ASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQ 233

Query: 388 SREAKKNPGCSWV 400
               K +  C+ V
Sbjct: 234 HAGVKPD-NCTLV 245


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 154/447 (34%), Positives = 244/447 (54%), Gaps = 47/447 (10%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF     +++VS+N M+  +A+      AL L  EM      P+  T   +   C+ 
Sbjct: 165 ARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSV 224

Query: 71  GHFLRPGKEIHARIIR--KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN----------- 117
            +    GK+IHA++ +  + ++ ++ L +A+ DMYAKCG +N+A+ VF+           
Sbjct: 225 LNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAW 284

Query: 118 ----------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155
                                 +  RD +S+  +I GYSQ   CSE+L LF EM  LG+K
Sbjct: 285 SSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIK 344

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL-----DFYTRSGRID 210
            D V+ +  +SACA L A   GK ++     +++   +F  N+IL     D Y + G ID
Sbjct: 345 PDEVTLVAVLSACARLGAFDLGKRLY----HQYIENGVFNQNTILTAAVMDMYAKCGSID 400

Query: 211 LANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
            A +IF  +   +K    +N++I G    G  +TAI +F  +   G+  D V+++ +L A
Sbjct: 401 SALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCA 460

Query: 269 CSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
           C H GL+E+GKK F+ M  A  +KP   HY CMVDLLGR G +E+A  L++ +P E ++ 
Sbjct: 461 CGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSV 520

Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
           IW ALL ACR +GNV++G  A + L  ++ QH   Y+LLSN+ A+A +W+EA +VR++M+
Sbjct: 521 IWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVME 580

Query: 388 SREAKKNPGCSWVQTRDEVQDFVVNDR 414
               +K PG S+++    +  FV +D+
Sbjct: 581 DHGIRKPPGWSYIELGGAIHRFVASDK 607



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 173/345 (50%), Gaps = 19/345 (5%)

Query: 54  EFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC---LN 110
           E P+S+ L   L +C      + G +IHA+ I  GL+  +F  + L   ++  G    L+
Sbjct: 8   ENPSSLCL---LESCKS---FKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLD 61

Query: 111 LAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-DVVSFMGAISAC 168
            ++ +F+ I   +   +N +I GYS++ +  E++ L+  M   G+   +  +F   +++C
Sbjct: 62  HSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSC 121

Query: 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWN 228
           A L++++ G E+H   I+    + LFV N+++  Y+  G ++LA  +FD   V+D  S+N
Sbjct: 122 ARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYN 181

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           T+I GY  + + ++A+ LF  M+  G+  D  +++A+ + CS       GK+   ++  +
Sbjct: 182 TMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKN 241

Query: 289 --SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGA 346
             S+    +  + +VD+  + GL+  A ++   +     A  W +++      G + +  
Sbjct: 242 LRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVAR 301

Query: 347 WAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
               H  M +     +  ++S  Y++AG+  EA    EL K  EA
Sbjct: 302 KLFNH--MHERDVISWTAMISG-YSQAGQCSEA---LELFKEMEA 340



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 124/236 (52%), Gaps = 6/236 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA+      A  LF+++ E++++SW AM++ ++Q     +AL+L +EM      P+ VTL
Sbjct: 291 YARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTL 350

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGL-NFDLFLTNALTDMYAKCGCLNLAQNVF---N 117
             VL ACAR      GK ++ + I  G+ N +  LT A+ DMYAKCG ++ A  +F    
Sbjct: 351 VAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVG 410

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
            + +    +N +I G +Q      ++++F E+   G+K D V+F+G + AC +   I++G
Sbjct: 411 KNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEG 470

Query: 178 KEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
           K++       + +   +     ++D   R G ++ A  +   +P + +S  W  L+
Sbjct: 471 KKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALL 526


>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
 gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
          Length = 834

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/417 (33%), Positives = 236/417 (56%), Gaps = 10/417 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y K     EA  +F  + +++ VSWN ++A   QN      +  + EM       +  T
Sbjct: 375 LYGKCKALVEAYLVFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFT 434

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +VL ACA    L  G  +H + I+ GL  D F+++ + DMY KCG +  A  + + I 
Sbjct: 435 YGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIG 494

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N +I G+S      E+   FSEM  +G+K D  ++   + +CANLA I+ GK+
Sbjct: 495 GQELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQ 554

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHG  I++ +    F++++++D Y + G +  +  +F+ +   D  SWN +I GY + G+
Sbjct: 555 IHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWNAMICGYALHGQ 614

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
              A+ +FE  ++  V  +  +++A+L ACSH GL++ G +YF  M +   ++P   H+A
Sbjct: 615 GFEALEMFERTQKANVAPNHATFVAVLRACSHVGLLDDGCRYFHLMTSRYKLEPQLEHFA 674

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CM          ++A+K I+++P+E DA IW  LL  C+I  +VE+   AA ++  L P 
Sbjct: 675 CMGP--------QEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPD 726

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
               YILLSN+YAE+GKW + S+ R LM+    KK PGCSW++ + E+  F+V +++
Sbjct: 727 DSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLVGEKV 783



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/463 (23%), Positives = 197/463 (42%), Gaps = 80/463 (17%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLV------------RE 48
           MY K     +A + FH + E+N VSW A++A   QN   ++ L+L+            R+
Sbjct: 207 MYGKCRSLEDALHFFHGMGERNSVSWGAVIAGCVQNEQYMRGLELLCRCKAITCLSTARQ 266

Query: 49  MPIH---NEF-PNSVTLTNVLPACARG---------------HFLRPGKEIHARIIRKGL 89
           +  H   N+F  + V  T ++   A+                H +     +   ++R GL
Sbjct: 267 LHAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGL 326

Query: 90  ------------------------------------NFDLFLTNALTDMYAKCGCLNLAQ 113
                                               + D+ + NA+ D+Y KC  L  A 
Sbjct: 327 GAEAMQLFQFMTRSGIGFGVVSLSGVFSACAEVKGFDVDVCVRNAILDLYGKCKALVEAY 386

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
            VF  +  RD VS+N +I    Q     +++   +EM   GM+ D  ++   + ACA L 
Sbjct: 387 LVFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQ 446

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
           +++ G  +HG  I+  L    FV+++++D Y + G I  A K+ D +  ++  SWN++I 
Sbjct: 447 SLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIGGQELVSWNSIIA 506

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
           G+ +  + + A   F  M + GV  D  +Y  +L +C++   +E GK+   ++    +  
Sbjct: 507 GFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQEMLG 566

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
            E   + +VD+  + G M D+  + + +  + D   W A++    ++G      + A  +
Sbjct: 567 DEFISSTLVDMYAKCGNMPDSQLMFEKVQ-KLDFVSWNAMICGYALHGQ----GFEALEM 621

Query: 353 FM------LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
           F       + P H  +  +L    +  G  D+  +   LM SR
Sbjct: 622 FERTQKANVAPNHATFVAVL-RACSHVGLLDDGCRYFHLMTSR 663



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 20/270 (7%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YA       A+ L   + + ++VSWNA+++ + Q  +    + L  EM      P+  TL
Sbjct: 107 YAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTL 166

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             +L AC     L  G +IHA  ++ GL  D+   +AL DMY KC  L  A + F+ +  
Sbjct: 167 AVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFHGMGE 226

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           R+ VS+  +I G  Q       L L                      C  +  +   +++
Sbjct: 227 RNSVSWGAVIAGCVQNEQYMRGLELLCR-------------------CKAITCLSTARQL 267

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   I+    +   V  +I+D Y ++  +  A + F  LP     + N +++G    G  
Sbjct: 268 HAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLG 327

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACS 270
             A+ LF+ M   G+G+  VS   + +AC+
Sbjct: 328 AEAMQLFQFMTRSGIGFGVVSLSGVFSACA 357



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 92/221 (41%), Gaps = 34/221 (15%)

Query: 47  REMPIHNEFPNSVTLTNVLPACAR-GH-FLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104
           R  P    F  + T ++V   CA  GH  L  G+  HAR++  G    +F++N L  MYA
Sbjct: 18  RPTPAQAAFLATATFSHVYQLCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYA 77

Query: 105 KCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFS---------------- 147
           +CG    A  VF+ +  RD VS+N ++  Y+   D   + SL                  
Sbjct: 78  RCGGAAHAHGVFDTMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSG 137

Query: 148 ---------------EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
                          EM   G+  D  +    + AC  L  +  G +IH + ++  L   
Sbjct: 138 YCQRGMFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMD 197

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           +   ++++D Y +   ++ A   F  +  ++S SW  +I G
Sbjct: 198 VRAGSALVDMYGKCRSLEDALHFFHGMGERNSVSWGAVIAG 238



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 81/207 (39%), Gaps = 40/207 (19%)

Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
           + A A  +A+  G+  H   +       +FV+N +L  Y R G    A+ +FD +P +D+
Sbjct: 38  LCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGVFDTMPHRDT 97

Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
            SWNT++  Y  +G+   A +L   M +     D VS+ A+L+     G+         E
Sbjct: 98  VSWNTMLTAYAHMGDTGMATSLLCVMPDP----DVVSWNALLSGYCQRGMFRDLVGLSIE 153

Query: 285 MQADSVKPTEMHYA-----------------------------------CMVDLLGRAGL 309
           M    V P     A                                    +VD+ G+   
Sbjct: 154 MARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGKCRS 213

Query: 310 MEDAVKLIKNLPVEPDANIWGALLGAC 336
           +EDA+     +  E ++  WGA++  C
Sbjct: 214 LEDALHFFHGMG-ERNSVSWGAVIAGC 239


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/439 (33%), Positives = 238/439 (54%), Gaps = 35/439 (7%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  I +  +  +N ++  ++ +    +   L  +M +    PN  + T +  ACA 
Sbjct: 35  AHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACAS 94

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNIL 129
               + G+ +H   ++ G   D+F   AL DMYAK G L+LA+  F+ ++ RD  ++N +
Sbjct: 95  LSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSM 154

Query: 130 IVGYSQTSDCSESLSLFSEM--------------------------------RLLGMKHD 157
           I GY++  D   +L LF  M                                    M+ +
Sbjct: 155 IAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPN 214

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
            V+    + ACANL A++ G+ I           +L+V+N++L+ Y R GRID A  +F+
Sbjct: 215 EVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFE 274

Query: 218 CLP-VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276
            +   ++  SWN++I+G  + G  D AI LF  M  +G   D V+++ +L AC+HGG+V 
Sbjct: 275 EIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVV 334

Query: 277 KGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +G+ +F+ M+ D S+ P   HY CMVDLLGRAG + +A  LI  +P+EPD+ +WG LLGA
Sbjct: 335 EGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGA 394

Query: 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395
           C  +G+VEL   AA  LF L+P + G Y++LSN+YA AG+WD  +++R+LMK  +  K  
Sbjct: 395 CSFHGHVELAEKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAA 454

Query: 396 GCSWVQTRDEVQDFVVNDR 414
           G S+++    +  F+V DR
Sbjct: 455 GYSFIEEGGHIHKFIVEDR 473



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 123/247 (49%), Gaps = 5/247 (2%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVT 60
           YA+      A  LF  +  +N+ SW AM++ +AQN    KAL +   M    E  PN VT
Sbjct: 158 YARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVT 217

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--I 118
           L +VLPACA    L  G+ I       G   +L+++NAL +MYA+CG ++ A  VF    
Sbjct: 218 LASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEID 277

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+  S+N +I+G +    C E++ LF +M   G   D V+F+G + AC +   + +G+
Sbjct: 278 GRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQ 337

Query: 179 EIHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGM 236
                  R   +   L     ++D   R+G +  A+ +   +P++ DS  W TL+     
Sbjct: 338 HFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSF 397

Query: 237 LGEVDTA 243
            G V+ A
Sbjct: 398 HGHVELA 404



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 116/236 (49%), Gaps = 10/236 (4%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILIVGYSQT 136
           K+I A  +R G+     L  +L  + +    +  A  +F+   +  V  YN LI  YS  
Sbjct: 5   KQIQAYTLRNGIEHTKQLIVSLLQIPS----IPYAHKLFDFIPKPTVFLYNKLIQAYSSH 60

Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
               +  SL+++M L G   +  SF    SACA+L++ +QG+ +H   ++      +F  
Sbjct: 61  GPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFAL 120

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
            +++D Y + G + LA K FD + V+D  +WN++I GY   G+++ A+ LF  M    V 
Sbjct: 121 TALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNV- 179

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYACMVDLLGRAGLME 311
               S+ A+++  +  G   K    F  M+ ++ ++P E+  A ++      G +E
Sbjct: 180 ---TSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALE 232


>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g01580
 gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/418 (36%), Positives = 236/418 (56%), Gaps = 4/418 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAKS    EA  LF  IAEK+++SW+ ++A + QN    +AL +  +M      PN  T+
Sbjct: 208 YAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATV 267

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL ACA  H L  G++ H   IRKGL  ++ ++ AL DMY KC     A  VF+ I  
Sbjct: 268 LCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPR 327

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKE 179
           +D VS+  LI G++       S+  FS M L    + D +  +  + +C+ L  ++Q K 
Sbjct: 328 KDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKC 387

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   I+    ++ F+  S+++ Y+R G +  A+K+F+ + +KD+  W +LI GYG+ G+
Sbjct: 388 FHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGK 447

Query: 240 VDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
              A+  F  M +   V  + V++++IL+ACSH GL+ +G + F  M  D  + P   HY
Sbjct: 448 GTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHY 507

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           A +VDLLGR G ++ A+++ K +P  P   I G LLGACRI+ N E+    A+ LF L+ 
Sbjct: 508 AVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELES 567

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
            H GYY+L+SN+Y   G+W+   K+R  +K R  KK    S ++ R +V  FV +D +
Sbjct: 568 NHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVADDEL 625



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 199/392 (50%), Gaps = 8/392 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MY K  R  EA  +F  + + +IV+W++MV+ F +N    +A++  R M + ++  P+ V
Sbjct: 105 MYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRV 164

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL  ++ AC +    R G+ +H  +IR+G + DL L N+L + YAK      A N+F  I
Sbjct: 165 TLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMI 224

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + +D +S++ +I  Y Q    +E+L +F++M   G + +V + +  + ACA    ++QG+
Sbjct: 225 AEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGR 284

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           + H + IRK L T + V+ +++D Y +    + A  +F  +P KD  SW  LI G+ + G
Sbjct: 285 KTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNG 344

Query: 239 EVDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
               +I  F  M  E+    D +  + +L +CS  G +E+ K +   +            
Sbjct: 345 MAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIG 404

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--- 354
           A +V+L  R G + +A K+   + ++ D  +W +L+    I+G          H+     
Sbjct: 405 ASLVELYSRCGSLGNASKVFNGIALK-DTVVWTSLITGYGIHGKGTKALETFNHMVKSSE 463

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
           +KP    +  +LS   + AG   E  ++ +LM
Sbjct: 464 VKPNEVTFLSILSAC-SHAGLIHEGLRIFKLM 494



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 160/340 (47%), Gaps = 4/340 (1%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
           K S   +A  +F  + ++++  WN ++ + ++ +   + L     M    E P++ TL  
Sbjct: 6   KFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPV 65

Query: 64  VLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
            L AC     +  G+ IH  + +   L  DL++ ++L  MY KCG +  A  +F+ +   
Sbjct: 66  ALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKP 125

Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEI 180
           D V+++ ++ G+ +     +++  F  M +   +  D V+ +  +SAC  L+  + G+ +
Sbjct: 126 DIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCV 185

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           HG  IR+     L + NS+L+ Y +S     A  +F  +  KD  SW+T+I  Y   G  
Sbjct: 186 HGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAA 245

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A+ +F  M +DG   +  + + +L AC+    +E+G+K  +      ++        +
Sbjct: 246 AEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTAL 305

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
           VD+  +    E+A  +   +P   D   W AL+    + G
Sbjct: 306 VDMYMKCFSPEEAYAVFSRIP-RKDVVSWVALISGFTLNG 344


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 144/416 (34%), Positives = 234/416 (56%), Gaps = 3/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K    ++A   F  +  K+ V W +M+  F +N    KAL    +M   + F +   
Sbjct: 220 MYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHV 279

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           L + L AC+       GK +HA I++ G  ++ F+ NALTDMY+K G +  A NVF I  
Sbjct: 280 LCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHS 339

Query: 121 R--DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
                VS   +I GY +     ++LS F ++R  G++ +  +F   I ACAN A ++ G 
Sbjct: 340 DCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGS 399

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++HG  ++ +     FV+++++D Y + G  D + ++FD +   D  +WNTL+  +   G
Sbjct: 400 QLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHG 459

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               AI  F  M   G+  + V+++ +L  CSH G+VE G  YF  M+    V P E HY
Sbjct: 460 LGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHY 519

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           +C++DLLGRAG +++A   I N+P EP+   W + LGAC+I+G++E   +AA+ L  L+P
Sbjct: 520 SCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEP 579

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           ++ G ++LLSN+YA+  +W++   +R+++K     K PG SWV  R++   F V D
Sbjct: 580 ENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVED 635



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 174/345 (50%), Gaps = 9/345 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +Y+K         LF  ++++N+VSW +++  FA N    +AL    +M I  E      
Sbjct: 119 LYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFA 178

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L++VL AC     ++ G ++H  +++ G   +LF+ + LTDMY+KCG L+ A   F  + 
Sbjct: 179 LSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMP 238

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D V +  +I G+ +  D  ++L+ + +M    +  D       +SAC+ L A   GK 
Sbjct: 239 CKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKS 298

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF----DCLPVKDSASWNTLILGYG 235
           +H   ++       F+ N++ D Y++SG +  A+ +F    DC+ +    S   +I GY 
Sbjct: 299 LHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISI---VSLTAIIDGYV 355

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
            + +++ A++ F  +R  G+  +  ++ +++ AC++   +E G +   ++   + K    
Sbjct: 356 EMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPF 415

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
             + +VD+ G+ GL + +++L   +   PD   W  L+G    +G
Sbjct: 416 VSSTLVDMYGKCGLFDHSIQLFDEIE-NPDEIAWNTLVGVFSQHG 459



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 53  NEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
           ++  ++ T+ +++   AR   L  GK++HA +IR G   + FL+N   ++Y+KCG L+  
Sbjct: 70  HKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYT 129

Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
             +F+ +S R+ VS+  +I G++  S   E+LS F +MR+ G      +    + AC +L
Sbjct: 130 IKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSL 189

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
            AI+ G ++H + ++      LFV +++ D Y++ G +  A K F+ +P KD+  W ++I
Sbjct: 190 GAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMI 249

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
            G+   G+   A+  +  M  D V  D     + L+ACS
Sbjct: 250 DGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACS 288



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 92/197 (46%), Gaps = 5/197 (2%)

Query: 141 ESLSLFSEMR-LLGMKH---DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
           E +  FS ++ L G  H   D  +    I   A    + +GK++H + IR     + F++
Sbjct: 54  EEIISFSFLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLS 113

Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
           N  L+ Y++ G +D   K+FD +  ++  SW ++I G+        A++ F  MR +G  
Sbjct: 114 NHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEI 173

Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
               +  ++L AC+  G ++ G +    +            + + D+  + G + DA K 
Sbjct: 174 ATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKA 233

Query: 317 IKNLPVEPDANIWGALL 333
            + +P + DA +W +++
Sbjct: 234 FEEMPCK-DAVLWTSMI 249


>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 611

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 143/420 (34%), Positives = 250/420 (59%), Gaps = 6/420 (1%)

Query: 1   MYAKSSRPAEASYL-FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           MYA  S   EA++L F +I  KN V+W  ++  F      +  L++ ++M + N      
Sbjct: 155 MYATCSVTMEAAFLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPY 214

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
            +T  + A A    +  GK+IHA ++++G   +L + N++ D Y +CG L+ A+  F+ +
Sbjct: 215 CITIAVRASASIDSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEM 274

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D +++N LI    + SD SE+L +F      G   +  +F   ++ACAN+AA+  G+
Sbjct: 275 EDKDLITWNTLISEL-ERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQ 333

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF-DCLPVKDSASWNTLILGYGML 237
           ++HG   R+  + ++ +AN+++D Y + G I  + ++F +    ++  SW ++++GYG  
Sbjct: 334 QLHGRIYRRGFNKNVELANALIDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIGYGSH 393

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G    A+ LF+ M   G+  D + ++A+L+AC H GLVEKG KYF+ M+++  + P    
Sbjct: 394 GYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDI 453

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL-GAWAAEHLFML 355
           Y C+VDLLGRAG + +A +L++ +P +PD + WGA+LGAC+ + +  L    AA+ +  L
Sbjct: 454 YNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKAHKHTGLISRLAAKKVMEL 513

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           KP+  G Y++LS +YA  GKW E ++VR++M+    KK  G SW++  ++V  F V+D+M
Sbjct: 514 KPRMVGTYVMLSYIYAAEGKWVEFARVRKMMRMMGNKKEAGMSWIEVENQVFSFAVSDKM 573



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 192/422 (45%), Gaps = 52/422 (12%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EA  LF  + E+++V+W AM+  +A +     A +   EM      PN  TL++VL +C 
Sbjct: 63  EARSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFHEMFKQGRSPNEFTLSSVLKSCR 122

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG-CLNLAQNVF-NISFRDEVSYN 127
               L  G  +H  +++ G+   L++ NAL +MYA C   +  A  +F +I  +++V++ 
Sbjct: 123 NMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYATCSVTMEAAFLIFRDIKVKNDVTWT 182

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            LI G++   D    L ++ +M L            A+ A A++ ++  GK+IH   +++
Sbjct: 183 TLITGFTHLGDGIGGLKMYKQMLLENADVTPYCITIAVRASASIDSVTTGKQIHASVVKR 242

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
              ++L V NSILDFY R G +  A + F  +  KD  +WNTLI     L   D++  L 
Sbjct: 243 GFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDKDLITWNTLI---SELERSDSSEALL 299

Query: 248 EAMREDGVGYDP--VSYIAILTACS-----------HGGLVEKG---------------- 278
              R +  G+ P   ++ +++ AC+           HG +  +G                
Sbjct: 300 MFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIYRRGFNKNVELANALIDMYA 359

Query: 279 --------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDAN 327
                   ++ F E++    +   + +  M+   G  G   +AV+L   +    + PD  
Sbjct: 360 KCGDIPDSERVFGEIEE---RRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRI 416

Query: 328 IWGALLGACRIYGNVELGAW---AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384
           ++ A+L ACR  G VE G       E  + + P     Y  + ++   AGK  EA ++ E
Sbjct: 417 VFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDR-DIYNCVVDLLGRAGKIGEAYELVE 475

Query: 385 LM 386
            M
Sbjct: 476 RM 477



 Score = 41.2 bits (95), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 32/162 (19%)

Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
           +KH   H+   N I+ ++ + G ++ A  +FD +P +D  +W  +I GY        A  
Sbjct: 42  KKH---HILATNLIVSYFEK-GLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWE 97

Query: 246 LFEAMREDGVGYDPVSYIAILTAC------SHGGLVE--------KGKKYFDEMQADSVK 291
            F  M + G   +  +  ++L +C      ++G LV         +G  Y D    +   
Sbjct: 98  CFHEMFKQGRSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMN--- 154

Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
              M+  C V        ME A  + +++ V+ D   W  L+
Sbjct: 155 ---MYATCSVT-------MEAAFLIFRDIKVKNDVT-WTTLI 185


>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
          Length = 641

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/418 (36%), Positives = 236/418 (56%), Gaps = 4/418 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAKS    EA  LF  IAEK+++SW+ ++A + QN    +AL +  +M      PN  T+
Sbjct: 189 YAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATV 248

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             VL ACA  H L  G++ H   IRKGL  ++ ++ AL DMY KC     A  VF+ I  
Sbjct: 249 LCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPR 308

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKE 179
           +D VS+  LI G++       S+  FS M L    + D +  +  + +C+ L  ++Q K 
Sbjct: 309 KDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKC 368

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
            H   I+    ++ F+  S+++ Y+R G +  A+K+F+ + +KD+  W +LI GYG+ G+
Sbjct: 369 FHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGK 428

Query: 240 VDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
              A+  F  M +   V  + V++++IL+ACSH GL+ +G + F  M  D  + P   HY
Sbjct: 429 GTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHY 488

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           A +VDLLGR G ++ A+++ K +P  P   I G LLGACRI+ N E+    A+ LF L+ 
Sbjct: 489 AVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELES 548

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
            H GYY+L+SN+Y   G+W+   K+R  +K R  KK    S ++ R +V  FV +D +
Sbjct: 549 NHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVADDEL 606



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 199/392 (50%), Gaps = 8/392 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
           MY K  R  EA  +F  + + +IV+W++MV+ F +N    +A++  R M + ++  P+ V
Sbjct: 86  MYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRV 145

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           TL  ++ AC +    R G+ +H  +IR+G + DL L N+L + YAK      A N+F  I
Sbjct: 146 TLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMI 205

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
           + +D +S++ +I  Y Q    +E+L +F++M   G + +V + +  + ACA    ++QG+
Sbjct: 206 AEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGR 265

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           + H + IRK L T + V+ +++D Y +    + A  +F  +P KD  SW  LI G+ + G
Sbjct: 266 KTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNG 325

Query: 239 EVDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
               +I  F  M  E+    D +  + +L +CS  G +E+ K +   +            
Sbjct: 326 MAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIG 385

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--- 354
           A +V+L  R G + +A K+   + ++ D  +W +L+    I+G          H+     
Sbjct: 386 ASLVELYSRCGSLGNASKVFNGIALK-DTVVWTSLITGYGIHGKGTKALETFNHMVKSSE 444

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
           +KP    +  +LS   + AG   E  ++ +LM
Sbjct: 445 VKPNEVTFLSILSAC-SHAGLIHEGLRIFKLM 475



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 154/326 (47%), Gaps = 4/326 (1%)

Query: 18  IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPG 77
           + ++++  WN ++ + ++ +   + L     M    E P++ TL   L AC     +  G
Sbjct: 1   MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYG 60

Query: 78  KEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
           + IH  + +   L  DL++ ++L  MY KCG +  A  +F+ +   D V+++ ++ G+ +
Sbjct: 61  EMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEK 120

Query: 136 TSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
                +++  F  M +   +  D V+ +  +SAC  L+  + G+ +HG  IR+     L 
Sbjct: 121 NGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLS 180

Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254
           + NS+L+ Y +S     A  +F  +  KD  SW+T+I  Y   G    A+ +F  M +DG
Sbjct: 181 LVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDG 240

Query: 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314
              +  + + +L AC+    +E+G+K  +      ++        +VD+  +    E+A 
Sbjct: 241 TEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAY 300

Query: 315 KLIKNLPVEPDANIWGALLGACRIYG 340
            +   +P   D   W AL+    + G
Sbjct: 301 AVFSRIP-RKDVVSWVALISGFTLNG 325


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/420 (35%), Positives = 236/420 (56%), Gaps = 6/420 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLE-LKALQLVREMPIHNEFPNSV 59
           +Y +     E    F  + + + VSWN+++   A +    L+A++    M      PN V
Sbjct: 534 LYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRV 593

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   +L A +       GK+IHA ++++ +  D  + NAL   Y KCG +   +N+F+ +
Sbjct: 594 TFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRM 653

Query: 119 SFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           S R DEVS+N +I GY       +++ +   M   G + D  +F   +SACA +A +++G
Sbjct: 654 SDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERG 713

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            E+HG ++R  L + + + ++++D Y + GRID A++ F+ +P ++  SWN++I GY   
Sbjct: 714 MEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARH 773

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMH 296
           G    +++LF  M+  G   D V+++ +L+ACSH GLV +G  +FD M +   + P   H
Sbjct: 774 GHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEH 833

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA-CRIYG-NVELGAWAAEHLFM 354
           ++CMVDLLGR G +      +  +PV+P+  IW  +LGA CR  G N  LG  AAE L  
Sbjct: 834 FSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLE 893

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           ++P +   YILLSNMYA  GKWD+ +K R  M+    KK  GCSWV  +D V  FV  D+
Sbjct: 894 MEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDK 953



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 187/372 (50%), Gaps = 6/372 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK     +A  +F  +  K+ V+WN+M+    QN+  L+A++  +EM     +P++ T
Sbjct: 433 MYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFT 492

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + + L +CA   ++  G+++H   ++ GL+ D+ ++NAL  +Y +CG +   Q  F++  
Sbjct: 493 MISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLML 552

Query: 121 R-DEVSYNILIVGYSQTSDCS-ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             D VS+N LI   + +     E++  F  M   G   + V+F+  ++A ++L+  + GK
Sbjct: 553 DYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGK 612

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGML 237
           +IH + +++++     + N++L  Y + G +     IF  +  + D  SWN++I GY   
Sbjct: 613 QIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHN 672

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
             +  A+++   M + G   D  ++  +L+AC+    +E+G +         ++   +  
Sbjct: 673 ELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIG 732

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG--ACRIYGNVELGAWAAEHLFML 355
           + +VD+  + G ++ A +  + +P   +   W +++   A   +G   L  +A   L   
Sbjct: 733 SALVDMYAKCGRIDYASRFFEMMPAR-NLYSWNSMISGYARHGHGTKSLDLFAQMKLQGP 791

Query: 356 KPQHCGYYILLS 367
            P H  +  +LS
Sbjct: 792 LPDHVTFVGVLS 803



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 168/349 (48%), Gaps = 19/349 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YA+         +F  +  +N+VSW+ +++ + +NR+  +A +L R+M      PN   
Sbjct: 117 IYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYA 176

Query: 61  LTNVLPACAR-GHF-LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC-GCLNLAQNVFN 117
             +V+ AC   G + L+ G +IH  + +     D+  +N L  MY    G ++ A+  F+
Sbjct: 177 FGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFD 236

Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL----GMKHDVVSFMGAISACANLA 172
            I  R+ VS N +I  Y Q  D   +  +FS M+      G+K +  +F   ISA  +LA
Sbjct: 237 SIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLA 296

Query: 173 ---AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
               +   + +  V     LH  L+V ++++  + ++G I  A  IF  +  ++  S N 
Sbjct: 297 NSGLVLLEQLLTRVEKSGFLHD-LYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNG 355

Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS 289
           LI+G       + A+ LF  M+ D V  +P SY+ ILTA     ++E GK+   E+ A  
Sbjct: 356 LIIGLVRQKRGEEAVELFMEMK-DSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFL 414

Query: 290 VKPTEMHYAC-----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
           ++   ++        ++++  + G + DA  + + L    D+  W +++
Sbjct: 415 IRSGLLNAQIAIGNGLINMYAKCGAINDACVVFR-LMDNKDSVTWNSMI 462



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 165/333 (49%), Gaps = 14/333 (4%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLV----REMPIHNEFPNSVTLTNVLPA-CA 69
           F +I  +N+VS N+M++ + Q    + A  +     +E+      PN  T  +++ A C+
Sbjct: 235 FDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCS 294

Query: 70  RGHF-LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
             +  L   +++  R+ + G   DL++ +AL   +AK G +  A+N+F  +S+R+ VS N
Sbjct: 295 LANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLN 354

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK----EIHGV 183
            LI+G  +     E++ LF EM+   ++ +  S+M  ++A      ++ GK    E+H  
Sbjct: 355 GLIIGLVRQKRGEEAVELFMEMKD-SVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAF 413

Query: 184 TIRKHL-HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
            IR  L +  + + N +++ Y + G I+ A  +F  +  KDS +WN++I G     +   
Sbjct: 414 LIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLE 473

Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
           A+  F+ MR   +     + I+ L++C+  G +  G++   E     +         ++ 
Sbjct: 474 AVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLA 533

Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           L G  G +++  K   +L ++ D   W +L+GA
Sbjct: 534 LYGECGYVKECQKAF-SLMLDYDHVSWNSLIGA 565



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 163/366 (44%), Gaps = 49/366 (13%)

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGY 133
           +  +E+H ++ + G   DLFL N L ++YA+ G L   + VF+ +  R+ VS++ LI GY
Sbjct: 90  KDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGY 149

Query: 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA--AIKQGKEIHGVTIRKHLHT 191
           ++    +E+  LF +M   G   +  +F   I AC       +K G +IHG+  +     
Sbjct: 150 TRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVN 209

Query: 192 HLFVANSILDFYTRS-GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250
            +  +N ++  Y  + G +D A + FD +  ++  S N++I  Y   G+  +A ++F  M
Sbjct: 210 DVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTM 269

Query: 251 RED--GVGYDPVSY-----IAILTACSHGGL---------VEKGKKYFDEMQADSVKP-- 292
           +++  G G  P  Y     I+   + ++ GL         VEK     D     ++    
Sbjct: 270 QKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGF 329

Query: 293 -------------TEMHYACMVDLLG------RAGLMEDAVKLIKNL--PVEPDANIWGA 331
                         +M Y  +V L G      R    E+AV+L   +   VE + N +  
Sbjct: 330 AKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMI 389

Query: 332 LLGACRIYGNVELGAWAAE--HLFMLKPQHCGYYIL----LSNMYAEAGKWDEASKVREL 385
           +L A   +  +E G       H F+++       I     L NMYA+ G  ++A  V  L
Sbjct: 390 ILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRL 449

Query: 386 MKSREA 391
           M ++++
Sbjct: 450 MDNKDS 455


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/406 (34%), Positives = 237/406 (58%), Gaps = 3/406 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN--SVTLTNVLPAC 68
           A  LF  I   NI SWN+M+   +Q++   K   ++    +   +PN  + T+  VL AC
Sbjct: 112 ARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKAC 171

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYN 127
           +    L  G+++HA +++ G     F+  AL + YAKC  + LA  VF+ I+ R+ V+++
Sbjct: 172 SIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWS 231

Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
            +I GY++    +E+L LF +M+  G+  D V+ +  ISACA   A+  GK +H    ++
Sbjct: 232 TMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQ 291

Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
            + T L ++ ++++ Y + G I+ A ++FD +PVKD+ +W+++I+G  + G  + A+  F
Sbjct: 292 LIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEF 351

Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
             M E  V  + V++I +L+AC+H GLV +G++Y+  M    + P+   Y CMVDLL RA
Sbjct: 352 FRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRA 411

Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
            L+EDA  L++ +P+ P+  IW  LL  C+   N++     A+ L  L+P +   YILLS
Sbjct: 412 SLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLS 471

Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           N+YA   +W++ S+VR+ MK    K  PGCS ++    V +FV+ D
Sbjct: 472 NLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGD 517



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 129/234 (55%), Gaps = 2/234 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           YAK      AS +F  I ++N+V+W+ M++ +A+  L  +AL L R+M      P+ VT+
Sbjct: 206 YAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTM 265

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
            +V+ ACA    L  GK +HA I ++ +  DL L+ AL +MYAKCGC+  A+ VF+ +  
Sbjct: 266 VSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPV 325

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           +D  +++ +IVG +      ++L  F  M    +K + V+F+G +SACA+   + +G+  
Sbjct: 326 KDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRY 385

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILG 233
               +   +   + +   ++D   R+  ++ A  + + +P+  +   W TL++G
Sbjct: 386 WSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVG 439



 Score = 44.7 bits (104), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 46/105 (43%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F  +  K+  +W++M+   A N L   AL+    M      PN VT
Sbjct: 306 MYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVT 365

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK 105
              VL ACA    +  G+   + ++  G+   + L   + D+  +
Sbjct: 366 FIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCR 410


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/419 (33%), Positives = 249/419 (59%), Gaps = 6/419 (1%)

Query: 1   MYAKSSRPA---EASYLFHNIAEKNIVSWNAMVANFAQN-RLELKALQLVREMPIHNEFP 56
           MYAK +      ++  +F  + E N++SW A++  +AQ+   + +A++L  +M   +  P
Sbjct: 100 MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRP 159

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N  + ++VL AC        G+++++  ++ G+     + N+L  MYA+ G +  A+  F
Sbjct: 160 NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF 219

Query: 117 NISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           +I F ++ VSYN ++ GY++     E+  LF+E+   G+     +F   +S  A++ A+ 
Sbjct: 220 DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 279

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           +G++IHG  ++    ++  + N+++  Y+R G I+ A ++F+ +  ++  SW ++I G+ 
Sbjct: 280 KGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFA 339

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
             G    A+ +F  M E G   + ++Y+A+L+ACSH G++ +G+K+F+ M  +  + P  
Sbjct: 340 KHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRM 399

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYACMVDLLGR+GL+ +A++ I ++P+  DA +W  LLGACR++GN ELG  AAE +  
Sbjct: 400 EHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILE 459

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            +P     YILLSN++A AG+W +  K+R+ MK R   K  GCSW++  + V  F V +
Sbjct: 460 QEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGE 518



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 173/332 (52%), Gaps = 10/332 (3%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           A A  +F  + E+N+V+W  M+  FAQ      A+ L  +M +    P+  T ++VL AC
Sbjct: 7   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 66

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC---GCLNLAQNVF-NISFRDEV 124
                L  GK++H+R+IR GL  D+ +  +L DMYAKC   G ++ ++ VF  +   + +
Sbjct: 67  TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 126

Query: 125 SYNILIVGYSQTSDC-SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGV 183
           S+  +I  Y+Q+ +C  E++ LF +M    ++ +  SF   + AC NL+    G++++  
Sbjct: 127 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 186

Query: 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
            ++  + +   V NS++  Y RSGR++ A K FD L  K+  S+N ++ GY    + + A
Sbjct: 187 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 246

Query: 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303
             LF  + + G+G    ++ ++L+  +  G + KG++    +     K  +     ++ +
Sbjct: 247 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 306

Query: 304 LGRAGLMEDAVKLIKNLPVEPDANI--WGALL 333
             R G +E A ++   +    D N+  W +++
Sbjct: 307 YSRCGNIEAAFQVFNEM---EDRNVISWTSMI 335


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 143/417 (34%), Positives = 235/417 (56%), Gaps = 37/417 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    +EA  +   ++ +++VSWN++V  +AQN+    AL++ REM       ++ T
Sbjct: 184 MYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGT 243

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD--MYAKCGCLNLAQNVFNI 118
           + ++LPA                           ++N  T+  MY K          F +
Sbjct: 244 MASLLPA---------------------------VSNTTTENVMYVK-------DMFFKM 269

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +  VS+N++I  Y + +   E++ L+S M   G + D VS    + AC + +A+  GK
Sbjct: 270 GKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGK 329

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IHG   RK L  +L + N+++D Y + G ++ A  +F+ +  +D  SW  +I  YG  G
Sbjct: 330 KIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSG 389

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A+ LF  +++ G+  D ++++  L ACSH GL+E+G+  F  M     + P   H 
Sbjct: 390 RGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHL 449

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACMVDLLGRAG +++A + I+++ +EP+  +WGALLGACR++ + ++G  AA+ LF L P
Sbjct: 450 ACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAP 509

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +  GYY+LLSN+YA+AG+W+E + +R +MKS+  KKNPG S V+    +  F+V DR
Sbjct: 510 EQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDR 566



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 150/324 (46%), Gaps = 11/324 (3%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           +R  + +H+RII + L  +  L   L   YA    +  A+ VF+ I  R+ +  N++I  
Sbjct: 55  IRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRS 114

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y       E + +F  M    ++ D  +F   + AC+    I  G++IHG   +  L + 
Sbjct: 115 YVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSST 174

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           LFV N ++  Y + G +  A  + D +  +D  SWN+L++GY      D A+ +   M  
Sbjct: 175 LFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMES 234

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
             + +D  +  ++L A S+     +   Y  +M     K + + +  M+ +  +  +  +
Sbjct: 235 VKISHDAGTMASLLPAVSN--TTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVE 292

Query: 313 AVKLIKNLPV---EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---L 366
           AV+L   +     EPDA    ++L AC     + LG     H ++ + +     +L   L
Sbjct: 293 AVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKI--HGYIERKKLIPNLLLENAL 350

Query: 367 SNMYAEAGKWDEASKVRELMKSRE 390
            +MYA+ G  ++A  V E MKSR+
Sbjct: 351 IDMYAKCGCLEKARDVFENMKSRD 374


>gi|356555295|ref|XP_003545969.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Glycine max]
          Length = 626

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 146/415 (35%), Positives = 245/415 (59%), Gaps = 3/415 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVT 60
           Y       +A  LF  +  K+ +SWN++V+ F++       L++   M     F  N +T
Sbjct: 96  YLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSRIGDLGNCLRVFYTMRYEMAFEWNELT 155

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           L +V+ ACA       G  +H   ++ G+  ++ + NA  +MY K GC++ A  +F  + 
Sbjct: 156 LLSVISACAFAKARDEGWCLHCCAVKLGMELEVKVVNAFINMYGKFGCVDSAFKLFWALP 215

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            ++ VS+N ++  ++Q    +E+++ F+ MR+ G+  D  + +  + AC  L   +  + 
Sbjct: 216 EQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNGLFPDEATILSLLQACEKLPLGRLVEA 275

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           IHGV     L+ ++ +A ++L+ Y++ GR+++++K+F  +   D  +   ++ GY M G 
Sbjct: 276 IHGVIFTCGLNENITIATTLLNLYSKLGRLNVSHKVFAEISKPDKVALTAMLAGYAMHGH 335

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYA 298
              AI  F+    +G+  D V++  +L+ACSH GLV  GK YF  M     V+P   HY+
Sbjct: 336 GKEAIEFFKWTVREGMKPDHVTFTHLLSACSHSGLVMDGKYYFQIMSDFYRVQPQLDHYS 395

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVDLLGR G++ DA +LIK++P+EP++ +WGALLGACR+Y N+ LG  AAE+L  L P 
Sbjct: 396 CMVDLLGRCGMLNDAYRLIKSMPLEPNSGVWGALLGACRVYRNINLGKEAAENLIALNPS 455

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
               YI+LSN+Y+ AG W +ASKVR LMK++   +N GCS+++  +++  FVV+D
Sbjct: 456 DPRNYIMLSNIYSAAGLWSDASKVRALMKTKVFIRNAGCSFIEHGNKIHRFVVDD 510



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 137/286 (47%), Gaps = 10/286 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A  LF  + E+N+VSWN+M+A + QN +  +A+     M ++  FP+  T
Sbjct: 197 MYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNGLFPDEAT 256

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
           + ++L AC +    R  + IH  I   GLN ++ +   L ++Y+K G LN++  VF  IS
Sbjct: 257 ILSLLQACEKLPLGRLVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVSHKVFAEIS 316

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D+V+   ++ GY+      E++  F      GMK D V+F   +SAC++   +  GK 
Sbjct: 317 KPDKVALTAMLAGYAMHGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACSHSGLVMDGKY 376

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGML 237
              +    + +   L   + ++D   R G ++ A ++   +P++ +S  W  L+      
Sbjct: 377 YFQIMSDFYRVQPQLDHYSCMVDLLGRCGMLNDAYRLIKSMPLEPNSGVWGALLGA---- 432

Query: 238 GEVDTAINLFEAMREDGVGY---DPVSYIAILTACSHGGLVEKGKK 280
             V   INL +   E+ +     DP +YI +    S  GL     K
Sbjct: 433 CRVYRNINLGKEAAENLIALNPSDPRNYIMLSNIYSAAGLWSDASK 478



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 144/301 (47%), Gaps = 19/301 (6%)

Query: 78  KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQT 136
           + IHAR+I+     D F+ + L   Y   G    AQ +F+ +  +D +S+N L+ G+S+ 
Sbjct: 71  RVIHARVIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSRI 130

Query: 137 SDCSESLSLFSEMRL-LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
            D    L +F  MR  +  + + ++ +  ISACA   A  +G  +H   ++  +   + V
Sbjct: 131 GDLGNCLRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEGWCLHCCAVKLGMELEVKV 190

Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
            N+ ++ Y + G +D A K+F  LP ++  SWN+++  +   G  + A+N F  MR +G+
Sbjct: 191 VNAFINMYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNGL 250

Query: 256 GYDPVSYIAILTACSH---GGLVE--KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
             D  + +++L AC     G LVE   G  +   +  +    T      +++L  + G +
Sbjct: 251 FPDEATILSLLQACEKLPLGRLVEAIHGVIFTCGLNENITIATT-----LLNLYSKLGRL 305

Query: 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGN----VELGAWAAEHLFMLKPQHCGYYILL 366
             + K+   +  +PD     A+L    ++G+    +E   W       +KP H  +  LL
Sbjct: 306 NVSHKVFAEIS-KPDKVALTAMLAGYAMHGHGKEAIEFFKWTVRE--GMKPDHVTFTHLL 362

Query: 367 S 367
           S
Sbjct: 363 S 363


>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
          Length = 749

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/419 (35%), Positives = 243/419 (57%), Gaps = 8/419 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F+ I+++N VSWN+M++ F  N    +A  L+  M       + VT
Sbjct: 294 MYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVT 353

Query: 61  LTNVLPACARGHFLRP--GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
           L N+L  C   +F+ P   K IH  +IR+G   +  + +AL D YAKC  + +A  VF  
Sbjct: 354 LVNILQICK--YFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFAR 411

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  RD VS++ +I G++      E+++++ EM    +K +V++ +  + AC+  A +K+ 
Sbjct: 412 MRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRS 471

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K  HGV IR+   + + V  +++D Y++ G I  + + FD L +K+  +W+ +I  YGM 
Sbjct: 472 KWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMN 531

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMH 296
           G    A+ LF  M+  G+  +PV+ +++L ACSHGGLVE+G   F  M Q   ++P   H
Sbjct: 532 GLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEH 591

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLP--VEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
           Y+CMVD+LGRAG ++ A+++IK +P  ++  A+IWG+LL ACR YG  ELG  A   +  
Sbjct: 592 YSCMVDMLGRAGKLDTAIEVIKAMPDNLKNGASIWGSLLSACRSYGLTELGKEAISRVLE 651

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           L+P +   Y++ S+MYA  G WD+A+++R L K +  K   G S V   ++   FV  D
Sbjct: 652 LEPSNSAGYLVASSMYAADGLWDDAARIRVLAKEKGVKVVAGYSLVHIDNKACRFVAGD 710



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 201/422 (47%), Gaps = 54/422 (12%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACA 69
           A  LF  + EK++++W+ M+  + Q       LQ+ R+M +     P+ V + +VL ACA
Sbjct: 202 ARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACA 261

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
               +  G+ +H  +I +G + DLF+ N+L DMY+KC     A  VFN IS R+ VS+N 
Sbjct: 262 SSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNS 321

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           ++ G+    + SE+ SL S MR   ++ D V+ +  +  C         K IH V IR+ 
Sbjct: 322 MLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRG 381

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
              +  V ++++D Y +   I++A ++F  +  +D  SW+T+I G+   G+ D AI +++
Sbjct: 382 SEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQ 441

Query: 249 AMREDGVGYDPVSYIAILTACS-----------HGGLVEKG------------------- 278
            M  D V  + ++ I +L ACS           HG  + +G                   
Sbjct: 442 EMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCG 501

Query: 279 -----KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IKNLPVEPDANIWG 330
                ++ FD++   ++    + ++ M+   G  GL  +A+ L   +K   ++P+     
Sbjct: 502 EILASRRAFDQLALKNI----VTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTL 557

Query: 331 ALLGACRIYGNVELGAWAAEHLFMLKPQHCG------YYILLSNMYAEAGKWDEASKVRE 384
           ++L AC   G VE G      LF    Q  G      +Y  + +M   AGK D A +V +
Sbjct: 558 SVLAACSHGGLVEEGL----SLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIK 613

Query: 385 LM 386
            M
Sbjct: 614 AM 615



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 126/253 (49%), Gaps = 3/253 (1%)

Query: 21  KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80
           ++ VSWN ++     N   +  L       +    PN  T+  V+ AC        G  +
Sbjct: 112 RDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLIL 171

Query: 81  HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDC 139
           H  +I+ G      + N+L  MY     +  A+ +F+ +  +D ++++++I GY Q  + 
Sbjct: 172 HGYLIKSGFWAISSVQNSLLSMYVDAD-MECARELFDEMHEKDVIAWSVMIGGYLQWEEP 230

Query: 140 SESLSLFSEMRLL-GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
              L +F +M L+ G++ D V  +  + ACA+   +  G+ +HG+ I +     LFV NS
Sbjct: 231 QVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENS 290

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
           ++D Y++      A K+F+ +  +++ SWN+++ G+ +      A +L  +MR++ V  D
Sbjct: 291 LIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETD 350

Query: 259 PVSYIAILTACSH 271
            V+ + IL  C +
Sbjct: 351 EVTLVNILQICKY 363



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 4/208 (1%)

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI--SFRDEVSYNILIVG 132
           R GK +HA +I++G +    + N++   Y +CG  ++A +VFN     RD VS+NILI G
Sbjct: 64  RHGKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHG 123

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           +         L  F+  R+ G + ++ + +  I AC  L     G  +HG  I+      
Sbjct: 124 HLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAI 183

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM-R 251
             V NS+L  Y     ++ A ++FD +  KD  +W+ +I GY    E    + +F  M  
Sbjct: 184 SSVQNSLLSMYV-DADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVL 242

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGK 279
             G+  D V  +++L AC+    V  G+
Sbjct: 243 VPGIEPDGVVMVSVLKACASSRDVCTGR 270



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 6/144 (4%)

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
           E +S + E++  G++   VS    I    +  + + GK +H   I++   +   + NSI+
Sbjct: 30  EVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLHACLIKQGFDSFTSIGNSIM 89

Query: 201 DFYTRSGRIDLANKIFDCL-PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
            FY R G  D+A  +F+ +   +DS SWN LI G+   G +   +  F   R  G   + 
Sbjct: 90  GFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNI 149

Query: 260 VSYIAILTAC-----SHGGLVEKG 278
            + + ++ AC      H GL+  G
Sbjct: 150 STMVLVIQACRILGTKHDGLILHG 173


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 153/408 (37%), Positives = 239/408 (58%), Gaps = 4/408 (0%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
           A  LF  + +     WN ++  + +N +  KA+ +  +M      P+  T   V+ ACA 
Sbjct: 88  ARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAE 147

Query: 71  GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
              L  G  +H  +++ GL F   +   L  MY K G L  A+ +F ++  RD V++N L
Sbjct: 148 LAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNAL 207

Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
           I    QT   S++L  F EM + G+K D V+ + A+SAC +L  ++ G+EI+     + +
Sbjct: 208 IAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGI 267

Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
            +++ V N+ LD   + G +D A  +FD +P ++  SW+T+I GY + GE + A+ LF  
Sbjct: 268 DSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSR 327

Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QAD--SVKPTEMHYACMVDLLGR 306
           M+  GV  + V+++A+L+ACSH G V +G +YF+ M Q+D  +++P + HYACMVDLLGR
Sbjct: 328 MKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGR 387

Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366
           +G +E+A   IK +P+E D  IWGALLGAC I+ N++LG   A+ LF L P+   Y++LL
Sbjct: 388 SGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIASYHVLL 447

Query: 367 SNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           SNMYA AG+W    KVR+ MK + A+K    S V+   E+      D+
Sbjct: 448 SNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDK 495



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 129/236 (54%), Gaps = 5/236 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K      A +LF ++ E+++V+WNA++A   Q     KALQ  REM +    P+SVT
Sbjct: 179 MYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVT 238

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           + + L AC     L  G+EI+     +G++ ++ + NA  DM AKCG ++ A N+F+ + 
Sbjct: 239 IVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMP 298

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R+ +S++ +I GY+   +  ++L+LFS M+  G++ + V+F+  +SAC++   + +G +
Sbjct: 299 QRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQ 358

Query: 180 IHGVTIR---KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
                 +   K++         ++D   RSG ++ A      +P++ D   W  L+
Sbjct: 359 YFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALL 414



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 135/286 (47%), Gaps = 8/286 (2%)

Query: 61  LTNVLPACARGHFLRPG--KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI 118
           LT +L +C+      P   K++HA ++  GL+    L   L       G ++ A+ +F+ 
Sbjct: 39  LTTLLQSCSS----HPSLLKQLHALLLTTGLSIKNALITQLLTSLTLLGDMSYARQLFDE 94

Query: 119 SFRDE-VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
             +     +N ++ GY +     +++S++ +MR LG++ D  +F   I ACA LA +  G
Sbjct: 95  MHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAELAELWAG 154

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
             +HG  ++  L     V   ++  Y + G +  A  +F  +  +D  +WN LI      
Sbjct: 155 LGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQT 214

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
           G    A+  F  M   G+  D V+ ++ L+AC H G +E G++ ++  + + +    + +
Sbjct: 215 GFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVH 274

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
              +D+  + G M+ A+ L   +P + +   W  ++G   + G  E
Sbjct: 275 NARLDMCAKCGDMDKAMNLFDEMP-QRNVISWSTVIGGYAVNGESE 319


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 218/364 (59%), Gaps = 11/364 (3%)

Query: 54  EFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ 113
           EF  SV LT  LP       + P  E+HA++++        +  AL D Y K G +  A 
Sbjct: 1   EFTYSVILT-ALPV------ISPS-EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAA 52

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL- 171
            VF+ I  +D V+++ ++ GY+QT +   ++ +F E+   G+K +  +F   ++ CA   
Sbjct: 53  KVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATN 112

Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
           A++ QGK+ HG  I+  L + L V++++L  Y + G I+ A ++F     KD  SWN++I
Sbjct: 113 ASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMI 172

Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SV 290
            GY   G+   A+++F+ M++  V  D V++I +  AC+H GLVE+G+KYFD M  D  +
Sbjct: 173 SGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKI 232

Query: 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
            PT+ H +CMVDL  RAG +E A+K+I+N+P    + IW  +L ACR++   ELG  AAE
Sbjct: 233 APTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAE 292

Query: 351 HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
            +  +KP+    Y+LLSNMYAE+G W E +KVR+LM  R  KK PG SW++ +++   F+
Sbjct: 293 KIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFL 352

Query: 411 VNDR 414
             DR
Sbjct: 353 AGDR 356



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 130/234 (55%), Gaps = 4/234 (1%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y K  +  EA+ +F  I +K+IV+W+AM+A +AQ      A+++  E+      PN  T 
Sbjct: 42  YVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTF 101

Query: 62  TNVLPACARGHF-LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           +++L  CA  +  +  GK+ H   I+  L+  L +++AL  MYAK G +  A+ VF    
Sbjct: 102 SSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQR 161

Query: 121 -RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            +D VS+N +I GY+Q     ++L +F EM+   +K D V+F+G  +AC +   +++G++
Sbjct: 162 EKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEK 221

Query: 180 IHGVTIRKHLHTHLFVANS-ILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLI 231
              + +R          NS ++D Y+R+G+++ A K+ + +P    S  W T++
Sbjct: 222 YFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTIL 275



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK      A  +F    EK++VSWN+M++ +AQ+   +KAL + +EM       + VT
Sbjct: 143 MYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVT 202

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNA-LTDMYAKCGCLNLAQNVFN 117
              V  AC     +  G++    ++R          N+ + D+Y++ G L  A  V  
Sbjct: 203 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIE 260


>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
 gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
          Length = 749

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/419 (35%), Positives = 243/419 (57%), Gaps = 8/419 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY+K      A  +F+ I+++N VSWN+M++ F  N    +A  L+  M       + VT
Sbjct: 294 MYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVT 353

Query: 61  LTNVLPACARGHFLRP--GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
           L N+L  C   +F+ P   K IH  +IR+G   +  + +AL D YAKC  + +A  VF  
Sbjct: 354 LVNILQICK--YFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFAR 411

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  RD VS++ +I G++      E+++++ EM    +K +V++ +  + AC+  A +K+ 
Sbjct: 412 MRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRS 471

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K  HGV IR+   + + V  +++D Y++ G I  + + FD L +K+  +W+ +I  YGM 
Sbjct: 472 KWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMN 531

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMH 296
           G    A+ LF  M+  G+  +PV+ +++L ACSHGGLVE+G   F  M Q   ++P   H
Sbjct: 532 GLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEH 591

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLP--VEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
           Y+CMVD+LGRAG ++ A+++IK +P  ++  A+IWG+LL ACR YG  ELG  A   +  
Sbjct: 592 YSCMVDMLGRAGKLDTAIEVIKAMPHNLKNGASIWGSLLSACRSYGLTELGKEAISRVLE 651

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           L+P +   Y++ S+MYA  G WD+A+++R L K +  K   G S V   ++   FV  D
Sbjct: 652 LEPSNSAGYLVASSMYAADGLWDDAARIRVLAKEKGVKVVAGYSLVHIDNKACRFVAGD 710



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 201/422 (47%), Gaps = 54/422 (12%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACA 69
           A  LF  + EK++++W+ M+  + Q       LQ+ R+M +     P+ V + +VL ACA
Sbjct: 202 ARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACA 261

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
               +  G+ +H  +I +G + DLF+ N+L DMY+KC     A  VFN IS R+ VS+N 
Sbjct: 262 SSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNS 321

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
           ++ G+    + SE+ SL S MR   ++ D V+ +  +  C         K IH V IR+ 
Sbjct: 322 MLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRG 381

Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
              +  V ++++D Y +   I++A ++F  +  +D  SW+T+I G+   G+ D AI +++
Sbjct: 382 SEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQ 441

Query: 249 AMREDGVGYDPVSYIAILTACS-----------HGGLVEKG------------------- 278
            M  D V  + ++ I +L ACS           HG  + +G                   
Sbjct: 442 EMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCG 501

Query: 279 -----KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL---IKNLPVEPDANIWG 330
                ++ FD++   ++    + ++ M+   G  GL  +A+ L   +K   ++P+     
Sbjct: 502 EILASRRAFDQLALKNI----VTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTL 557

Query: 331 ALLGACRIYGNVELGAWAAEHLFMLKPQHCG------YYILLSNMYAEAGKWDEASKVRE 384
           ++L AC   G VE G      LF    Q  G      +Y  + +M   AGK D A +V +
Sbjct: 558 SVLAACSHGGLVEEGL----SLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIK 613

Query: 385 LM 386
            M
Sbjct: 614 AM 615



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 126/253 (49%), Gaps = 3/253 (1%)

Query: 21  KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80
           ++ VSWN ++     N   +  L       +    PN  T+  V+ AC        G  +
Sbjct: 112 RDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLIL 171

Query: 81  HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDC 139
           H  +I+ G      + N+L  MY     +  A+ +F+ +  +D ++++++I GY Q  + 
Sbjct: 172 HGYLIKSGFWAISSVQNSLLSMYVDAD-MECARELFDEMHEKDVIAWSVMIGGYLQWEEP 230

Query: 140 SESLSLFSEMRLL-GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANS 198
              L +F +M L+ G++ D V  +  + ACA+   +  G+ +HG+ I +     LFV NS
Sbjct: 231 QVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENS 290

Query: 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
           ++D Y++      A K+F+ +  +++ SWN+++ G+ +      A +L  +MR++ V  D
Sbjct: 291 LIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETD 350

Query: 259 PVSYIAILTACSH 271
            V+ + IL  C +
Sbjct: 351 EVTLVNILQICKY 363



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 4/208 (1%)

Query: 75  RPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI--SFRDEVSYNILIVG 132
           R GK +HA +I++G +    + N++   Y +CG  ++A +VFN     RD VS+NILI G
Sbjct: 64  RHGKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHG 123

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           +         L  F+  R+ G + ++ + +  I AC  L     G  +HG  I+      
Sbjct: 124 HLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAI 183

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM-R 251
             V NS+L  Y     ++ A ++FD +  KD  +W+ +I GY    E    + +F  M  
Sbjct: 184 SSVQNSLLSMYV-DADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVL 242

Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGK 279
             G+  D V  +++L AC+    V  G+
Sbjct: 243 VPGIEPDGVVMVSVLKACASSRDVCTGR 270



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 6/144 (4%)

Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
           E +S + E++  G++   VS    I    +  + + GK +H   I++   +   + NSI+
Sbjct: 30  EVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLHACLIKQGFDSFTSIGNSIM 89

Query: 201 DFYTRSGRIDLANKIFDCL-PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
            FY R G  D+A  +F+ +   +DS SWN LI G+   G +   +  F   R  G   + 
Sbjct: 90  GFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNI 149

Query: 260 VSYIAILTAC-----SHGGLVEKG 278
            + + ++ AC      H GL+  G
Sbjct: 150 STMVLVIQACRILGTKHDGLILHG 173


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 147/421 (34%), Positives = 245/421 (58%), Gaps = 8/421 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++ +    +  +F N+ EK++VSWN M++ F QN L  +AL L  EM   +   +SVT
Sbjct: 358 MYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVT 417

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           +T +L A +       GK+ H  ++R G+ F+  + + L DMYAK G +  AQNVF  SF
Sbjct: 418 VTALLSAASDLRNPDIGKQTHGYLLRNGIQFE-GMDSYLIDMYAKSGLIEAAQNVFEKSF 476

Query: 121 ---RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              RD+ ++N ++ GY+Q     ++  +  +M    +  +VV+    + AC     I  G
Sbjct: 477 SHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWG 536

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K++HG +IR  L  ++FVA +++D Y++SG I  A  +F     K   +++T+ILGYG  
Sbjct: 537 KQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQH 596

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G  ++A+ +F  M++ G+  D V+ +A+L+ACS+ GLV++G + F+ M+   +++P+  H
Sbjct: 597 GMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEH 656

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDA-NIWGALLGACRIYGNVELGAWAAEHLFML 355
           + C+ D+LGRAG ++ A + +  L  + +   IWG+LL ACRI+   ELG   A+ L  +
Sbjct: 657 FCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEM 716

Query: 356 KPQH--CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +  +   GY++LLSN+YAE   W+    VR+ M+ R  KK  G SW++    +  F   D
Sbjct: 717 EKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEIAGYMNHFASKD 776

Query: 414 R 414
           R
Sbjct: 777 R 777



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 198/420 (47%), Gaps = 43/420 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL-VREMPIHNEFPNSV 59
           MYA+      A  +F N  E+N   WN M++ F QN   L+ +QL  + +   +   + V
Sbjct: 256 MYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEV 315

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           TL + + A +        +++HA +I+      + + NAL  MY++C  ++ +  +F N+
Sbjct: 316 TLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNM 375

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D VS+N +I  + Q     E+L LF EM+   +  D V+    +SA ++L     GK
Sbjct: 376 PEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGK 435

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD--CLPVKDSASWNTLILGYGM 236
           + HG  +R  +     + + ++D Y +SG I+ A  +F+      +D A+WN+++ GY  
Sbjct: 436 QTHGYLLRNGIQFE-GMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQ 494

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK---------------- 280
            G VD A  +   M +  V  + V+  +IL AC+  G ++ GK+                
Sbjct: 495 NGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFV 554

Query: 281 ---------------YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---V 322
                          + + + + + + + + Y+ M+   G+ G+ E A+ +   +    +
Sbjct: 555 ATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGI 614

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHL---FMLKPQHCGYYILLSNMYAEAGKWDEA 379
           +PDA    A+L AC   G V+ G    E +   + ++P    ++  +++M   AG+ D+A
Sbjct: 615 QPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPS-TEHFCCVADMLGRAGRVDKA 673



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 172/348 (49%), Gaps = 6/348 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M +  SR      +F  + ++ +V+WN ++A + +     +A++    M      P+ V+
Sbjct: 153 MVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVS 212

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVF-N 117
             NV PA +     +    +H  +++ G  +  DL++ ++   MYA+ GCL  A+ VF N
Sbjct: 213 FVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDN 272

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLAAIKQ 176
              R+   +N +I  + Q +   E + LF + +       D V+ + AISA ++L   + 
Sbjct: 273 CLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFEL 332

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            +++H   I+    T + V N+++  Y+R   ID + KIFD +P KD  SWNT+I  +  
Sbjct: 333 AEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQ 392

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G  D A+ LF  M++  +  D V+  A+L+A S     + GK+    +  + ++   M 
Sbjct: 393 NGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMD 452

Query: 297 YACMVDLLGRAGLMEDAVKLI-KNLPVEPDANIWGALLGACRIYGNVE 343
            + ++D+  ++GL+E A  +  K+   E D   W +++      G V+
Sbjct: 453 -SYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVD 499



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 158/350 (45%), Gaps = 32/350 (9%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP----NSVTLTNVLP 66
           A  LF  +   + V WN ++     N    +AL     M   +  P    +S T ++VL 
Sbjct: 47  ARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNM--KSSSPQVKCDSYTYSSVLK 104

Query: 67  ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL-------------NLAQ 113
           ACA    L  GK +HA  +R  +N    + N+L +MY+ C                +L +
Sbjct: 105 ACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVR 164

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
            VF+ +  R  V++N LI  Y +T   +E++  FS M  +G+K   VSF+    A ++L 
Sbjct: 165 KVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLG 224

Query: 173 AIKQGKEIHGVTIR--KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
             K    +HG+ ++        L+V +S +  Y   G ++ A K+FD    +++  WNT+
Sbjct: 225 DFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTM 284

Query: 231 ILGYGMLGEVDTAINL-FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS 289
           I  +         I L F+A+  +    D V+ ++ ++A SH    E      +++ A  
Sbjct: 285 ISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELA----EQLHAFV 340

Query: 290 VKPTEMHYACMVDLL----GRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +K   +   C+++ L     R   ++ + K+  N+P E D   W  ++ A
Sbjct: 341 IKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMP-EKDVVSWNTMISA 389



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 114/256 (44%), Gaps = 37/256 (14%)

Query: 107 GCLNLAQNVFNISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMG 163
           G L+LA+ +F+   R   V +N +I+G    +   E+L  +S M+     +K D  ++  
Sbjct: 42  GQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSS 101

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR-----------SG--RID 210
            + ACA+   +  GK +H   +R  ++    V NS+L+ Y+            SG  R D
Sbjct: 102 VLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCD 161

Query: 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
           L  K+FD +  +   +WNTLI  Y        A+  F  M + G+   PVS++ +  A S
Sbjct: 162 LVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFS 221

Query: 271 -----------HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319
                      HG LV+ G +Y +++   S           + +    G +E A K+  N
Sbjct: 222 SLGDFKNANVVHGMLVKLGSEYVNDLYVVS---------SAIFMYAELGCLEFAKKVFDN 272

Query: 320 LPVEPDANIWGALLGA 335
             +E +  +W  ++ A
Sbjct: 273 C-LERNTEVWNTMISA 287



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG--VGYDPVSY 262
           + G++ LA ++FD LP   +  WNT+I+G       D A+  +  M+     V  D  +Y
Sbjct: 40  QEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTY 99

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303
            ++L AC+    +  GK          + P+ + Y  ++++
Sbjct: 100 SSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNM 140


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 151/437 (34%), Positives = 242/437 (55%), Gaps = 24/437 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    AEA  +F  +  ++ VSWNA++A   QN    + L L   M      P+  T
Sbjct: 426 MYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFT 485

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             ++L AC  G  L  G EIH+ I++ G+  +  +  +L DMY+KCG +  A+ + +  F
Sbjct: 486 FGSILKACTGGS-LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFF 544

Query: 121 RDE---------------------VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
           +                       VS+N +I GY       ++  LF+ M  +G+  D  
Sbjct: 545 QRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKF 604

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           ++   +  CANLA+   GK+IH   I+K L + +++ ++++D Y++ G +  +  +F+  
Sbjct: 605 TYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKS 664

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
             +D  +WN +I GY   G+ + AI LFE M  + +  + V++I+IL AC+H GL++KG 
Sbjct: 665 LRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGL 724

Query: 280 KYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
           +YF  M+ D  + P   HY+ MVD+LG++G ++ A++LI+ +P E D  IW  LLG C I
Sbjct: 725 EYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTI 784

Query: 339 Y-GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           +  NVE+   A   L  L PQ    Y LLSN+YA+AG W++ S +R  M+  + KK PGC
Sbjct: 785 HRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGC 844

Query: 398 SWVQTRDEVQDFVVNDR 414
           SWV+ +DE+  F+V D+
Sbjct: 845 SWVELKDELHVFLVGDK 861



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 165/321 (51%), Gaps = 10/321 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R  E+  +F  I EKN VSW+A++A   QN L   AL+  +EM   N   +   
Sbjct: 224 MYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSI 283

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             +VL +CA    LR G ++HA  ++     D  +  A  DMYAKC  +  AQ +F+ S 
Sbjct: 284 YASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSE 343

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             +  SYN +I GYSQ     ++L LF  +   G+  D +S  G   ACA +  + +G +
Sbjct: 344 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 403

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I+G+ I+  L   + VAN+ +D Y +   +  A ++FD +  +D+ SWN +I  +   G+
Sbjct: 404 IYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGK 463

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMH 296
               + LF +M    +  D  ++ +IL AC+ G L      Y  E+ +  VK    +   
Sbjct: 464 GYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSL-----GYGMEIHSSIVKSGMASNSS 518

Query: 297 YAC-MVDLLGRAGLMEDAVKL 316
             C ++D+  + G++E+A K+
Sbjct: 519 VGCSLIDMYSKCGMIEEAEKI 539



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 156/335 (46%), Gaps = 2/335 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+KS+   +A+  F+ +  +++VSWN+M++ + QN   LK++++  +M       +  T 
Sbjct: 124 YSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTF 183

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             +L  C+       G +IH  ++R G + D+   +AL DMYAK      +  VF  I  
Sbjct: 184 AIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPE 243

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ VS++ +I G  Q +  S +L  F EM+ +        +   + +CA L+ ++ G ++
Sbjct: 244 KNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQL 303

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++        V  + LD Y +   +  A  +FD     +  S+N +I GY      
Sbjct: 304 HAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHG 363

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A+ LF  +   G+G+D +S   +  AC+    + +G + +      S+          
Sbjct: 364 FKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAA 423

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +D+ G+   + +A ++   +    DA  W A++ A
Sbjct: 424 IDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIAA 457



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 126/298 (42%), Gaps = 35/298 (11%)

Query: 57  NSVTLTN---VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMY---------- 103
           NSV+ TN   V   CA+   L  GK+ HA +I  G     F+ N L  +Y          
Sbjct: 44  NSVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSAS 103

Query: 104 ---------------------AKCGCLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSE 141
                                +K   +  A + FN+   RD VS+N ++ GY Q  +  +
Sbjct: 104 MVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLK 163

Query: 142 SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201
           S+ +F +M   G++ D  +F   +  C+ L     G +IHG+ +R    T +  A+++LD
Sbjct: 164 SIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLD 223

Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
            Y +  R   + ++F  +P K+S SW+ +I G      +  A+  F+ M++   G     
Sbjct: 224 MYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSI 283

Query: 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319
           Y ++L +C+    +  G +              +     +D+  +   M+DA  L  N
Sbjct: 284 YASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDN 341



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
             +F      CA   A++ GK+ H   I        FV N +L  YT S     A+ +FD
Sbjct: 48  TTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFD 107

Query: 218 CLPVKDSASWNTLILGY-------------------------GML------GEVDTAINL 246
            +P++D  SWN +I GY                          ML      GE   +I +
Sbjct: 108 KMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEV 167

Query: 247 FEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQADSVKPTEM 295
           F  M  +G+ +D  ++  IL  CS           HG +V  G         D V  +  
Sbjct: 168 FVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVG------CDTDVVAAS-- 219

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
               ++D+  +     +++++ + +P E ++  W A++  C
Sbjct: 220 ---ALLDMYAKGKRFVESLRVFQGIP-EKNSVSWSAIIAGC 256


>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 696

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/421 (34%), Positives = 240/421 (57%), Gaps = 8/421 (1%)

Query: 2   YAKSSRPAEASYLFHNIAE-KNIVSWNAMVANFAQNRLELKALQL-VREMPIHNEFPNSV 59
           Y++     ++  +F  I + ++++SWNAM+  +  N ++ +A++  VR M      P+  
Sbjct: 238 YSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMY 297

Query: 60  TLTNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG---CLNLAQNV 115
           + T+++ +C+  GH    G+ IH  +I+  L     + NAL  MY +      +  A   
Sbjct: 298 SFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKC 357

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           FN +  +D VS+N ++ GYSQ    +++L  F  M    ++ D  +F  A+ + + LA +
Sbjct: 358 FNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVL 417

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           + GK+IHG+ I     ++ FV++S++  Y++SG ID A K F+      S  WN +I GY
Sbjct: 418 QLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGY 477

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G+ +    LF  M +     D ++++ ++T+CSH GLV++G +  + M+     P  
Sbjct: 478 AQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLR 537

Query: 295 M-HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
           M HYAC VDL GRAG ++ A KLI ++P EPDA +W  LLGACRI+GNVEL +  A HLF
Sbjct: 538 MEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLF 597

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + +P+    Y+LLS+MY+  G W + + V+ +MK R   K PG SW++ ++EV  F   D
Sbjct: 598 VAEPRQHSTYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSWIEVKNEVHSFNAED 657

Query: 414 R 414
           +
Sbjct: 658 K 658



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 191/402 (47%), Gaps = 20/402 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK  R  +A  +F  + E+N VSWNA++A + ++     AL+L  EM      P+  T
Sbjct: 137 VYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEAT 196

Query: 61  LTNVL-----PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
             ++L     P+C   H      ++H +I++ G    L + NA    Y++CG L  ++ +
Sbjct: 197 FASLLTAVEGPSCFLMH------QLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRI 250

Query: 116 FN--ISFRDEVSYNILIVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLA 172
           F+     RD +S+N ++  Y+      E++  F   M+  G+  D+ SF   IS+C+   
Sbjct: 251 FDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHG 310

Query: 173 AIK-QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR---IDLANKIFDCLPVKDSASWN 228
               QG+ IHG+ I+  L     V N+++  YTR      ++ A K F+ L +KD+ SWN
Sbjct: 311 HDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWN 370

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           +++ GY   G    A+  F  M  + V  D  ++ A L + S   +++ GK+    +   
Sbjct: 371 SMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHS 430

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE-LGAW 347
                +   + ++ +  ++G+++DA K  +    +  +  W A++     +G  E +   
Sbjct: 431 GFASNDFVSSSLIFMYSKSGIIDDARKSFEEAD-KSSSVPWNAMIFGYAQHGQAENVDIL 489

Query: 348 AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
             E L    P     ++ L    + AG  DE S++   M+++
Sbjct: 490 FNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETK 531



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 171/348 (49%), Gaps = 11/348 (3%)

Query: 2   YAKSSRP--AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           Y++SS    A A  +F  +  ++ VSWNA++A  A +    +A +L+R M       N+ 
Sbjct: 35  YSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQGLASNTF 94

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
            L + L + A       G ++ +  ++ GL  ++F  +AL D+YAKCG +  A+ VF+ +
Sbjct: 95  ALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGM 154

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ VS+N LI GY+++ D + +L LF EM   G+  D  +F   ++A    +      
Sbjct: 155 PERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAVEGPSCFLM-H 213

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL-PVKDSASWNTLILGYGML 237
           ++HG  ++      L V N+ +  Y++ G +  + +IFD +  ++D  SWN ++  Y   
Sbjct: 214 QLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHN 273

Query: 238 GEVDTAINLF-EAMREDGVGYDPVSYIAILTACS-HGGLVEKGKKYFD---EMQADSVKP 292
           G  D A+  F   M+E GV  D  S+ +I+++CS HG    +G+       +   + V P
Sbjct: 274 GMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTP 333

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
                  M        +MEDA K   +L V  D   W ++L     +G
Sbjct: 334 VCNALIAMYTRYNENCMMEDAYKCFNSL-VLKDTVSWNSMLTGYSQHG 380


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 151/437 (34%), Positives = 242/437 (55%), Gaps = 24/437 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    AEA  +F  +  ++ VSWNA++A   QN    + L L   M      P+  T
Sbjct: 384 MYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFT 443

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             ++L AC  G  L  G EIH+ I++ G+  +  +  +L DMY+KCG +  A+ + +  F
Sbjct: 444 FGSILKACTGGS-LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFF 502

Query: 121 RDE---------------------VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
           +                       VS+N +I GY       ++  LF+ M  +G+  D  
Sbjct: 503 QRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKF 562

Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
           ++   +  CANLA+   GK+IH   I+K L + +++ ++++D Y++ G +  +  +F+  
Sbjct: 563 TYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKS 622

Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
             +D  +WN +I GY   G+ + AI LFE M  + +  + V++I+IL AC+H GL++KG 
Sbjct: 623 LRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGL 682

Query: 280 KYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
           +YF  M+ D  + P   HY+ MVD+LG++G ++ A++LI+ +P E D  IW  LLG C I
Sbjct: 683 EYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTI 742

Query: 339 Y-GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
           +  NVE+   A   L  L PQ    Y LLSN+YA+AG W++ S +R  M+  + KK PGC
Sbjct: 743 HRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGC 802

Query: 398 SWVQTRDEVQDFVVNDR 414
           SWV+ +DE+  F+V D+
Sbjct: 803 SWVELKDELHVFLVGDK 819



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 165/321 (51%), Gaps = 10/321 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  R  E+  +F  I EKN VSW+A++A   QN L   AL+  +EM   N   +   
Sbjct: 182 MYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSI 241

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
             +VL +CA    LR G ++HA  ++     D  +  A  DMYAKC  +  AQ +F+ S 
Sbjct: 242 YASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSE 301

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             +  SYN +I GYSQ     ++L LF  +   G+  D +S  G   ACA +  + +G +
Sbjct: 302 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 361

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           I+G+ I+  L   + VAN+ +D Y +   +  A ++FD +  +D+ SWN +I  +   G+
Sbjct: 362 IYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGK 421

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMH 296
               + LF +M    +  D  ++ +IL AC+ G L      Y  E+ +  VK    +   
Sbjct: 422 GYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSL-----GYGMEIHSSIVKSGMASNSS 476

Query: 297 YAC-MVDLLGRAGLMEDAVKL 316
             C ++D+  + G++E+A K+
Sbjct: 477 VGCSLIDMYSKCGMIEEAEKI 497



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 156/335 (46%), Gaps = 2/335 (0%)

Query: 2   YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
           Y+KS+   +A+  F+ +  +++VSWN+M++ + QN   LK++++  +M       +  T 
Sbjct: 82  YSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTF 141

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
             +L  C+       G +IH  ++R G + D+   +AL DMYAK      +  VF  I  
Sbjct: 142 AIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPE 201

Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
           ++ VS++ +I G  Q +  S +L  F EM+ +        +   + +CA L+ ++ G ++
Sbjct: 202 KNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQL 261

Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
           H   ++        V  + LD Y +   +  A  +FD     +  S+N +I GY      
Sbjct: 262 HAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHG 321

Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
             A+ LF  +   G+G+D +S   +  AC+    + +G + +      S+          
Sbjct: 322 FKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAA 381

Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +D+ G+   + +A ++   +    DA  W A++ A
Sbjct: 382 IDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIAA 415



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 119/284 (41%), Gaps = 32/284 (11%)

Query: 68  CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMY------------------------ 103
           CA+   L  GK+ HA +I  G     F+ N L  +Y                        
Sbjct: 16  CAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSW 75

Query: 104 -------AKCGCLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155
                  +K   +  A + FN+   RD VS+N ++ GY Q  +  +S+ +F +M   G++
Sbjct: 76  NKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIE 135

Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
            D  +F   +  C+ L     G +IHG+ +R    T +  A+++LD Y +  R   + ++
Sbjct: 136 FDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRV 195

Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275
           F  +P K+S SW+ +I G      +  A+  F+ M++   G     Y ++L +C+    +
Sbjct: 196 FQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSEL 255

Query: 276 EKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319
             G +              +     +D+  +   M+DA  L  N
Sbjct: 256 RLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDN 299



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 90/230 (39%), Gaps = 62/230 (26%)

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
           +RLL M   V         CA   A++ GK+ H   I        FV N +L  YT S  
Sbjct: 5   LRLLHMTRSV--------ECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRD 56

Query: 209 IDLANKIFDCLPVKDSASWNTLILGY-------------------------GML------ 237
              A+ +FD +P++D  SWN +I GY                          ML      
Sbjct: 57  FVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQN 116

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQ 286
           GE   +I +F  M  +G+ +D  ++  IL  CS           HG +V  G        
Sbjct: 117 GESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVG------CD 170

Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
            D V  +      ++D+  +     +++++ + +P E ++  W A++  C
Sbjct: 171 TDVVAAS-----ALLDMYAKGKRFVESLRVFQGIP-EKNSVSWSAIIAGC 214


>gi|293333548|ref|NP_001170485.1| uncharacterized protein LOC100384484 [Zea mays]
 gi|238005588|gb|ACR33829.1| unknown [Zea mays]
 gi|413920755|gb|AFW60687.1| hypothetical protein ZEAMMB73_143396 [Zea mays]
          Length = 569

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 142/402 (35%), Positives = 223/402 (55%), Gaps = 4/402 (0%)

Query: 1   MYAKSSRPAEASYLF--HNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
           MY +    A+A  +F   + + + +VSW +MVA + QN    +A+ L   M      PN 
Sbjct: 164 MYFQEGEVADAELVFAESHGSSRTVVSWTSMVAGYVQNYYFGEAVALFGTMIAEGVLPNE 223

Query: 59  VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
           +TL + LP      +L  G+ +H  +IR G + ++ L NAL  MY KCG + +AQ +F  
Sbjct: 224 ITLISFLPCLQGQEWLDAGEMVHGFVIRLGFDANIPLANALIAMYGKCGSIPMAQTLFEG 283

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           +  R   S+N ++  Y Q +D  E++  F  M    +  D V+ +  +SACA   A++ G
Sbjct: 284 MPARSLASWNTMVAMYEQHADVVEAIKFFRRMLTEKVGFDCVTLVSVLSACARSGALQTG 343

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K +H +     L T   + N ++D Y + G I  A  +FDCL ++   SW+ +I  Y   
Sbjct: 344 KWVHELARNHGLDTDARIGNVLVDMYAKCGEIASARNVFDCLRMRSVVSWSAMISAYANH 403

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G  + A+ LF  M+ +GV  +  ++ A+L AC H GLVE+G K+F+ + +D  + PT  H
Sbjct: 404 GASEEALKLFSLMKNEGVRPNSFTFTAVLVACGHSGLVEEGLKHFNSILSDYQMSPTLEH 463

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
           YACMVD+LGRAG + +A ++I+ + + PD  +WGA L  C+++GN+EL  + A  LF   
Sbjct: 464 YACMVDMLGRAGRLIEAYEIIRGMSLCPDKCVWGAFLAGCKLHGNLELAEFVARDLFQSG 523

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCS 398
                +Y+L+SNMY EAG   +A ++R  MK  E  K  G S
Sbjct: 524 SNDVTFYVLMSNMYFEAGMLKDAERMRWAMKEMELNKTAGRS 565



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 193/427 (45%), Gaps = 60/427 (14%)

Query: 8   PAEASY---LFHNIAEKNIVSWNAMVANFAQNRLELKA--LQLVREMPIHNEFPNSVTLT 62
           PA  +Y   +F     ++   WN ++   + ++L   A  L L + M      P+  T  
Sbjct: 65  PASLAYARRVFDATPVRDAYMWNTLLRAHSHSQLSHAADTLALYKRMRAAGVAPDHYTYP 124

Query: 63  NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---NIS 119
            VLPACA    L  G+ +H  ++R  L  D F+ +AL  MY + G +  A+ VF   + S
Sbjct: 125 IVLPACAAARELWLGRAVHGDVVRFALAGDGFVHSALITMYFQEGEVADAELVFAESHGS 184

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            R  VS+  ++ GY Q     E+++LF  M   G+  + ++ +  +        +  G+ 
Sbjct: 185 SRTVVSWTSMVAGYVQNYYFGEAVALFGTMIAEGVLPNEITLISFLPCLQGQEWLDAGEM 244

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +HG  IR     ++ +AN+++  Y + G I +A  +F+ +P +  ASWNT++  Y    +
Sbjct: 245 VHGFVIRLGFDANIPLANALIAMYGKCGSIPMAQTLFEGMPARSLASWNTMVAMYEQHAD 304

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-------------------- 279
           V  AI  F  M  + VG+D V+ +++L+AC+  G ++ GK                    
Sbjct: 305 VVEAIKFFRRMLTEKVGFDCVTLVSVLSACARSGALQTGKWVHELARNHGLDTDARIGNV 364

Query: 280 ---------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK---LIKNLP 321
                            FD ++  SV    + ++ M+      G  E+A+K   L+KN  
Sbjct: 365 LVDMYAKCGEIASARNVFDCLRMRSV----VSWSAMISAYANHGASEEALKLFSLMKNEG 420

Query: 322 VEPDANIWGALLGACRIYGNVELGAWAAEHL------FMLKPQHCGYYILLSNMYAEAGK 375
           V P++  + A+L AC   G VE G    +H       + + P    +Y  + +M   AG+
Sbjct: 421 VRPNSFTFTAVLVACGHSGLVEEG---LKHFNSILSDYQMSPT-LEHYACMVDMLGRAGR 476

Query: 376 WDEASKV 382
             EA ++
Sbjct: 477 LIEAYEI 483



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 147/364 (40%), Gaps = 57/364 (15%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNILIVG 132
           LR    IHAR I  G++ +     +L    A    L  A+ VF+ +  RD   +N L+  
Sbjct: 34  LRALLPIHARAIVLGVSANPAFATSLLAGVAPAS-LAYARRVFDATPVRDAYMWNTLLRA 92

Query: 133 YS--QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH 190
           +S  Q S  +++L+L+  MR  G+  D  ++   + ACA    +  G+ +HG  +R  L 
Sbjct: 93  HSHSQLSHAADTLALYKRMRAAGVAPDHYTYPIVLPACAAARELWLGRAVHGDVVRFALA 152

Query: 191 THLFVANSILDFYTRSGRIDLANKIF--DCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
              FV ++++  Y + G +  A  +F       +   SW +++ GY        A+ LF 
Sbjct: 153 GDGFVHSALITMYFQEGEVADAELVFAESHGSSRTVVSWTSMVAGYVQNYYFGEAVALFG 212

Query: 249 AMREDGVGYDPVSYIAILTACS-----------HGGLVEKG------------------- 278
            M  +GV  + ++ I+ L               HG ++  G                   
Sbjct: 213 TMIAEGVLPNEITLISFLPCLQGQEWLDAGEMVHGFVIRLGFDANIPLANALIAMYGKCG 272

Query: 279 -----KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP---DANIWG 330
                +  F+ M A S+      +  MV +  +   + +A+K  + +  E    D     
Sbjct: 273 SIPMAQTLFEGMPARSLAS----WNTMVAMYEQHADVVEAIKFFRRMLTEKVGFDCVTLV 328

Query: 331 ALLGACRIYGNVELGAWAAEHLFMLKPQH-----CGYYILLSNMYAEAGKWDEASKVREL 385
           ++L AC   G ++ G W  E    L   H          +L +MYA+ G+   A  V + 
Sbjct: 329 SVLSACARSGALQTGKWVHE----LARNHGLDTDARIGNVLVDMYAKCGEIASARNVFDC 384

Query: 386 MKSR 389
           ++ R
Sbjct: 385 LRMR 388


>gi|354805179|gb|AER41598.1| pentatricopeptide [Oryza glaberrima]
          Length = 544

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 147/412 (35%), Positives = 230/412 (55%), Gaps = 12/412 (2%)

Query: 15  FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVTLTNVLPACARGH- 72
           F     ++ V WN MV+ ++ + L  +   +   M   + FP +  T + +L   A    
Sbjct: 88  FDETPLRDQVLWNVMVSCYSSHGLVRECWDVFGSMR-RSGFPGDGFTFSALLSVRASSSS 146

Query: 73  -------FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEV 124
                   L  G  +H  +IR GL+ D+ +  AL DMYAKCG +  A  VF+ +  R+ V
Sbjct: 147 CYDHANLLLVLGSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTV 206

Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
           S+N +IV Y +     E+  LF  M   G   D ++    +S+CA++AA  +  ++H  T
Sbjct: 207 SWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYT 266

Query: 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244
           +R+ L   L V N+++  Y ++G +  A + F  +   D  +W++++  +  LG   +AI
Sbjct: 267 VRRGLQDFLQVGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAI 326

Query: 245 NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDL 303
           +LF+ M + G+  D ++++ + +ACSH GL+E G KYF  M  D  + PT  H AC+VDL
Sbjct: 327 DLFDRMLQQGIRADGIAFLGVFSACSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACLVDL 386

Query: 304 LGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY 363
           LGRAG + DA + + N+  + + ++ GA LGACR+ GN+E   WAA  LF LKP     Y
Sbjct: 387 LGRAGRIRDAYEFLVNMSCDANVDVIGAFLGACRMRGNIESAKWAASRLFSLKPDDPINY 446

Query: 364 ILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           +L+SN YA AG W+E +KVR +M++    K PGCSW++    VQ FV ND M
Sbjct: 447 LLISNTYAAAGDWNELAKVRSVMRNMCGNKVPGCSWIEIGGIVQTFVSNDMM 498



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 8/214 (3%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK  + AEAS +F  +  +N VSWNA++  + ++    +A  L   M  H   P+ +T
Sbjct: 183 MYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELT 242

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           L ++L +CA         ++HA  +R+GL   L + NAL   Y K G +  A+  F  I 
Sbjct: 243 LASLLSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKNGFVQEAKRTFGMIH 302

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V+++ ++  ++       ++ LF  M   G++ D ++F+G  SAC++   I+ G +
Sbjct: 303 NPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVFSACSHAGLIEDGFK 362

Query: 180 IHGVTIRKH----LHTHLFVANSILDFYTRSGRI 209
              +  R +       HL     ++D   R+GRI
Sbjct: 363 YFLLMTRDYKIDPTPQHL---ACLVDLLGRAGRI 393


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 147/421 (34%), Positives = 245/421 (58%), Gaps = 8/421 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++ +    +  +F N+ EK++VSWN M++ F QN L  +AL L  EM   +   +SVT
Sbjct: 334 MYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVT 393

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           +T +L A +       GK+ H  ++R G+ F+  + + L DMYAK G +  AQNVF  SF
Sbjct: 394 VTALLSAASDLRNPDIGKQTHGYLLRNGIQFE-GMDSYLIDMYAKSGLIEAAQNVFEKSF 452

Query: 121 ---RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
              RD+ ++N ++ GY+Q     ++  +  +M    +  +VV+    + AC     I  G
Sbjct: 453 SHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWG 512

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           K++HG +IR  L  ++FVA +++D Y++SG I  A  +F     K   +++T+ILGYG  
Sbjct: 513 KQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQH 572

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G  ++A+ +F  M++ G+  D V+ +A+L+ACS+ GLV++G + F+ M+   +++P+  H
Sbjct: 573 GMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEH 632

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDA-NIWGALLGACRIYGNVELGAWAAEHLFML 355
           + C+ D+LGRAG ++ A + +  L  + +   IWG+LL ACRI+   ELG   A+ L  +
Sbjct: 633 FCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEM 692

Query: 356 KPQH--CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           +  +   GY++LLSN+YAE   W+    VR+ M+ R  KK  G SW++    +  F   D
Sbjct: 693 EKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEIAGYMNHFASKD 752

Query: 414 R 414
           R
Sbjct: 753 R 753



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 198/420 (47%), Gaps = 43/420 (10%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQL-VREMPIHNEFPNSV 59
           MYA+      A  +F N  E+N   WN M++ F QN   L+ +QL  + +   +   + V
Sbjct: 232 MYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEV 291

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
           TL + + A +        +++HA +I+      + + NAL  MY++C  ++ +  +F N+
Sbjct: 292 TLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNM 351

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +D VS+N +I  + Q     E+L LF EM+   +  D V+    +SA ++L     GK
Sbjct: 352 PEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGK 411

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD--CLPVKDSASWNTLILGYGM 236
           + HG  +R  +     + + ++D Y +SG I+ A  +F+      +D A+WN+++ GY  
Sbjct: 412 QTHGYLLRNGIQFE-GMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQ 470

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK---------------- 280
            G VD A  +   M +  V  + V+  +IL AC+  G ++ GK+                
Sbjct: 471 NGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFV 530

Query: 281 ---------------YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---V 322
                          + + + + + + + + Y+ M+   G+ G+ E A+ +   +    +
Sbjct: 531 ATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGI 590

Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHL---FMLKPQHCGYYILLSNMYAEAGKWDEA 379
           +PDA    A+L AC   G V+ G    E +   + ++P    ++  +++M   AG+ D+A
Sbjct: 591 QPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPS-TEHFCCVADMLGRAGRVDKA 649



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 169/340 (49%), Gaps = 6/340 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           M +  SR      +F  + ++ +V+WN ++A + +     +A++    M      P+ V+
Sbjct: 129 MVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVS 188

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVF-N 117
             NV PA +     +    +H  +++ G  +  DL++ ++   MYA+ GCL  A+ VF N
Sbjct: 189 FVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDN 248

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLAAIKQ 176
              R+   +N +I  + Q +   E + LF + +       D V+ + AISA ++L   + 
Sbjct: 249 CLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFEL 308

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
            +++H   I+    T + V N+++  Y+R   ID + KIFD +P KD  SWNT+I  +  
Sbjct: 309 AEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQ 368

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            G  D A+ LF  M++  +  D V+  A+L+A S     + GK+    +  + ++   M 
Sbjct: 369 NGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMD 428

Query: 297 YACMVDLLGRAGLMEDAVKLI-KNLPVEPDANIWGALLGA 335
            + ++D+  ++GL+E A  +  K+   E D   W +++  
Sbjct: 429 -SYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSG 467



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 158/350 (45%), Gaps = 32/350 (9%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP----NSVTLTNVLP 66
           A  LF  +   + V WN ++     N    +AL     M   +  P    +S T ++VL 
Sbjct: 23  ARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMK--SSSPQVKCDSYTYSSVLK 80

Query: 67  ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL-------------NLAQ 113
           ACA    L  GK +HA  +R  +N    + N+L +MY+ C                +L +
Sbjct: 81  ACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVR 140

Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
            VF+ +  R  V++N LI  Y +T   +E++  FS M  +G+K   VSF+    A ++L 
Sbjct: 141 KVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLG 200

Query: 173 AIKQGKEIHGVTIR--KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
             K    +HG+ ++        L+V +S +  Y   G ++ A K+FD    +++  WNT+
Sbjct: 201 DFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTM 260

Query: 231 ILGYGMLGEVDTAINL-FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS 289
           I  +         I L F+A+  +    D V+ ++ ++A SH    E      +++ A  
Sbjct: 261 ISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELA----EQLHAFV 316

Query: 290 VKPTEMHYACMVDLL----GRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           +K   +   C+++ L     R   ++ + K+  N+P E D   W  ++ A
Sbjct: 317 IKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMP-EKDVVSWNTMISA 365



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 114/256 (44%), Gaps = 37/256 (14%)

Query: 107 GCLNLAQNVFNISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMG 163
           G L+LA+ +F+   R   V +N +I+G    +   E+L  +S M+     +K D  ++  
Sbjct: 18  GQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSS 77

Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR-----------SG--RID 210
            + ACA+   +  GK +H   +R  ++    V NS+L+ Y+            SG  R D
Sbjct: 78  VLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCD 137

Query: 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
           L  K+FD +  +   +WNTLI  Y        A+  F  M + G+   PVS++ +  A S
Sbjct: 138 LVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFS 197

Query: 271 -----------HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319
                      HG LV+ G +Y +++   S           + +    G +E A K+  N
Sbjct: 198 SLGDFKNANVVHGMLVKLGSEYVNDLYVVS---------SAIFMYAELGCLEFAKKVFDN 248

Query: 320 LPVEPDANIWGALLGA 335
             +E +  +W  ++ A
Sbjct: 249 C-LERNTEVWNTMISA 263



 Score = 41.2 bits (95), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG--VGYDPVSY 262
           + G++ LA ++FD LP   +  WNT+I+G       D A+  +  M+     V  D  +Y
Sbjct: 16  QEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTY 75

Query: 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303
            ++L AC+    +  GK          + P+ + Y  ++++
Sbjct: 76  SSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNM 116


>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
          Length = 696

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 145/421 (34%), Positives = 240/421 (57%), Gaps = 8/421 (1%)

Query: 2   YAKSSRPAEASYLFHNIAE-KNIVSWNAMVANFAQNRLELKALQL-VREMPIHNEFPNSV 59
           Y++     ++  +F  I + ++++SWNAM+  +  N ++ +A++  VR M      P+  
Sbjct: 238 YSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMY 297

Query: 60  TLTNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG---CLNLAQNV 115
           + T+++ +C+  GH    G+ IH  +I+  L     + NAL  MY +      +  A   
Sbjct: 298 SFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKC 357

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
           FN +  +D VS+N ++ GYSQ    +++L  F  M    ++ D  +F  A+ + + LA +
Sbjct: 358 FNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVL 417

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           + GK+IHG+ I     ++ FV++S++  Y++SG ID A K F+      S  WN +I GY
Sbjct: 418 QLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGY 477

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
              G+ +    LF  M +     D ++++ ++T+CSH GLV++G +  + M+     P  
Sbjct: 478 AQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLR 537

Query: 295 M-HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
           M HYAC VDL GRAG ++ A KLI ++P EPDA +W  LLGACRI+GNVEL +  A HLF
Sbjct: 538 MEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLF 597

Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
           + +P+    Y+LLS+MY+  G W + + V+ +MK R   K PG SW++ ++EV  F   D
Sbjct: 598 VAEPRQHSTYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSWIEVKNEVHSFNAED 657

Query: 414 R 414
           +
Sbjct: 658 K 658



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 191/402 (47%), Gaps = 20/402 (4%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           +YAK  R  +A  +F  + E+N VSWNA++A + ++     AL+L  EM      P+  T
Sbjct: 137 VYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEAT 196

Query: 61  LTNVL-----PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
             ++L     P+C   H      ++H +I++ G    L + NA    Y++CG L  ++ +
Sbjct: 197 FASLLTAVEGPSCFLMH------QLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRI 250

Query: 116 FN--ISFRDEVSYNILIVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLA 172
           F+     RD +S+N ++  Y+      E++  F   M+  G+  D+ SF   IS+C+   
Sbjct: 251 FDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHG 310

Query: 173 AIK-QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR---IDLANKIFDCLPVKDSASWN 228
               QG+ IHG+ I+  L     V N+++  YTR      ++ A K F+ L +KD+ SWN
Sbjct: 311 HDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWN 370

Query: 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
           +++ GY   G    A+  F  M  + V  D  ++ A L + S   +++ GK+    +   
Sbjct: 371 SMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHS 430

Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE-LGAW 347
                +   + ++ +  ++G+++DA K  +    +  +  W A++     +G  E +   
Sbjct: 431 GFASNDFVSSSLIFMYSKSGIIDDARKSFEEAD-KSSSVPWNAMIFGYAQHGQAENVDIL 489

Query: 348 AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
             E L    P     ++ L    + AG  DE S++   M+++
Sbjct: 490 FNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETK 531



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 171/348 (49%), Gaps = 11/348 (3%)

Query: 2   YAKSSRP--AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
           Y++SS    A A  +F  +  ++ VSWNA++A  A +    +A +L+R M       N+ 
Sbjct: 35  YSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQGLASNTF 94

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
            L + L + A       G ++ +  ++ GL  ++F  +AL D+YAKCG +  A+ VF+ +
Sbjct: 95  ALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGM 154

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ VS+N LI GY+++ D + +L LF EM   G+  D  +F   ++A    +      
Sbjct: 155 PERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAVEGPSCFLM-H 213

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL-PVKDSASWNTLILGYGML 237
           ++HG  ++      L V N+ +  Y++ G +  + +IFD +  ++D  SWN ++  Y   
Sbjct: 214 QLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHN 273

Query: 238 GEVDTAINLF-EAMREDGVGYDPVSYIAILTACS-HGGLVEKGKKYFD---EMQADSVKP 292
           G  D A+  F   M+E GV  D  S+ +I+++CS HG    +G+       +   + V P
Sbjct: 274 GMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTP 333

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
                  M        +MEDA K   +L V  D   W ++L     +G
Sbjct: 334 VCNALIAMYTRYNENCMMEDAYKCFNSL-VLKDTVSWNSMLTGYSQHG 380


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 142/419 (33%), Positives = 229/419 (54%), Gaps = 5/419 (1%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK    + A  +F+ I   ++V+WNA++A FA      +A+    +M      P+ +T
Sbjct: 310 MYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEIT 369

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
           + ++L AC     L  G ++H  I + GL+ D+ + N L  MYAKC  L  A   F    
Sbjct: 370 VRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFE-EM 428

Query: 121 R---DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
           R   D VS+N ++    +     E   L   M +   + D ++    + A A   +I+ G
Sbjct: 429 RCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIG 488

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
            ++H   ++  L+    V N ++D Y + G +  A+KIFD +   D  SW++LILGY   
Sbjct: 489 NQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQF 548

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
           G  + A+ LF+ MR   V  + V+++ +LTACSH GLVE+G K +  M+ +  + PT  H
Sbjct: 549 GYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREH 608

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
            +CMVDLL RAG + +A   I  +  +PD  +W  LL AC+ +GNV++G  AAE++  + 
Sbjct: 609 CSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKID 668

Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           P +   ++LL N+YA  G W++ +++R LMK R  +K PG SW++ +D +  F V D +
Sbjct: 669 PSNSAAHVLLCNIYASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVKDRIHVFFVEDSL 727



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 182/379 (48%), Gaps = 20/379 (5%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K     +A  +F  + E+N+VSW +++A ++QN     AL+   +M      P+  T
Sbjct: 107 MYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFT 166

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
             +++ AC+    +  G+++HA +++      +   NAL  MY K   +  A +VF+ ++
Sbjct: 167 FGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMA 226

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI-SACANLAAIKQGK 178
            RD +S+  +I G+SQ     E+L  F EM   G+        G++ SAC++L   + G+
Sbjct: 227 TRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGR 286

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++HG++I+  L   +F   S+ D Y + G +  A  +F  +   D  +WN +I G+   G
Sbjct: 287 QLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGG 346

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK---YFDEMQADSVKPTEM 295
           +   AI  F  MR  G+  D ++  ++L AC+    + +G +   Y ++M  D   P   
Sbjct: 347 DAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPV-- 404

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF-- 353
               ++ +  +   + DA+   + +    D   W A+L AC  +         AE +F  
Sbjct: 405 -CNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQ-------AEEVFRL 456

Query: 354 ---MLKPQHCGYYILLSNM 369
              M   QH   YI L+N+
Sbjct: 457 LKLMCISQHRPDYITLTNV 475



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 138/283 (48%), Gaps = 13/283 (4%)

Query: 60  TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
           T   ++ AC+    L  GK+IH  +++   + DL L N + +MY KC  L  AQ VF+ +
Sbjct: 65  TYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAM 124

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             R+ VS+  +I GYSQ      +L  + +M   G+  D  +F   I AC++L  I  G+
Sbjct: 125 PERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGR 184

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           ++H   ++     H+   N+++  YT+S  I  A  +F  +  +D  SW ++I G+  LG
Sbjct: 185 QLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLG 244

Query: 239 EVDTAINLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVK---PT 293
               A+  F+ M   GV Y P  +I  ++ +ACS     E G+    ++   S+K     
Sbjct: 245 YELEALCYFKEMLHQGV-YLPNEFIFGSVFSACSSLLQPEYGR----QLHGMSIKFGLGR 299

Query: 294 EMHYAC-MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
           ++   C + D+  + GL+  A  +   +   PD   W A++  
Sbjct: 300 DVFAGCSLCDMYAKCGLLSCARVVFYQIG-RPDLVAWNAIIAG 341


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 141/416 (33%), Positives = 238/416 (57%), Gaps = 2/416 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYAK+     A ++F +  E+N ++W+AM+  +AQN     A+ +  +M      P   T
Sbjct: 264 MYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFT 323

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
              VL A +    L  GK+ H  +++ G    +++ +AL DMYAKCGC+  A+  F+  +
Sbjct: 324 FVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLY 383

Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
             D V +  ++ G+ Q  +  E+L+L++ M   G+     +    + ACA +AA++ GK+
Sbjct: 384 EVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQ 443

Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
           +H   ++  L     V +++   Y++ G ++    +F  +P +D  +WN++I G+   G 
Sbjct: 444 LHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGC 503

Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
            + A++LFE M+ +G   D +++I IL ACSH GLV++G +YF  M  D  + P   HYA
Sbjct: 504 GNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYA 563

Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
           CMVD+L RAG++++A   I+++ ++    +W  +LGACR   + ++GA+A E L  L  +
Sbjct: 564 CMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTR 623

Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
               YILLSN+YA   KW++  +VR LM+ R   K+PGCSWV+    V  FVV ++
Sbjct: 624 DSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVHVFVVGEQ 679



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 172/337 (51%), Gaps = 7/337 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP---N 57
           MY K    ++A  +F  + ++N  SW+ MVA +A  +   +A  L R M    E P   +
Sbjct: 162 MYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLML--EECPSEKS 219

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
               T VL A +    L  G+++H  I++ GL   + + N+L  MYAK GC+  A +VF 
Sbjct: 220 EFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFE 279

Query: 118 ISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            S  R+ ++++ +I GY+Q  +   ++S+FS+M   G      +F+G ++A ++L A+  
Sbjct: 280 SSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAV 339

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           GK+ HG+ ++      ++V ++++D Y + G I  A + FD L   D   W  ++ G+  
Sbjct: 340 GKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQ 399

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
            GE + A+ L+  M ++G+     +  + L AC+    +E GK+   ++    +      
Sbjct: 400 NGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPV 459

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
            + +  +  + G +ED + + + +P + D   W +++
Sbjct: 460 GSALSTMYSKCGNLEDGMSVFRRIP-DRDVIAWNSII 495



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 162/341 (47%), Gaps = 12/341 (3%)

Query: 2   YAKSSRP--AEASYLFHNI--AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE-FP 56
           Y+   RP  A A  +F +I  A +++ SWN+++   +++R  L AL   R M   +   P
Sbjct: 57  YSSLPRPLLAAAFAVFDDIPPAARDVASWNSLLNPLSRHR-PLDALSRFRSMLSSSTVLP 115

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
           +  +      A AR      G   HA   +      ++++  +L +MY K G ++ A+ +
Sbjct: 116 SPHSFAAAFTAAARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRM 175

Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFMGAISACANLA 172
           F+ +  R+  S++ ++ GY+      E+  LF  M       K + V+    +SA +   
Sbjct: 176 FDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVA-TAVLSAVSVPL 234

Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
            +  G+++HG+ ++  L   + V NS++  Y ++G +  A  +F+    ++S +W+ +I 
Sbjct: 235 GLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMIT 294

Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
           GY   GE D+A+++F  M   G      +++ +L A S  G +  GK+    M     + 
Sbjct: 295 GYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEV 354

Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
                + +VD+  + G + DA +    L  E D  +W A++
Sbjct: 355 QIYVKSALVDMYAKCGCIADAKEGFDQL-YEVDIVLWTAMV 394



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN--KIFDCLP--VKDSASWNTL 230
           + G+ +H   ++    +H  VANS+++FY+   R  LA    +FD +P   +D ASWN+L
Sbjct: 29  RHGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSL 88

Query: 231 I 231
           +
Sbjct: 89  L 89


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 143/417 (34%), Positives = 235/417 (56%), Gaps = 37/417 (8%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY K    +EA  +   ++ +++VSWN++V  +AQN+    AL++ REM       ++ T
Sbjct: 184 MYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGT 243

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD--MYAKCGCLNLAQNVFNI 118
           + ++LPA                           ++N  T+  MY K          F +
Sbjct: 244 MASLLPA---------------------------VSNTTTENVMYVK-------DMFFKM 269

Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
             +  VS+N++I  Y + +   E++ L+S M   G + D VS    + AC + +A+  GK
Sbjct: 270 GKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGK 329

Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
           +IHG   RK L  +L + N+++D Y + G ++ A  +F+ +  +D  SW  +I  YG  G
Sbjct: 330 KIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSG 389

Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
               A+ LF  +++ G+  D ++++  L ACSH GL+E+G+  F  M     + P   H 
Sbjct: 390 RGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHL 449

Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
           ACMVDLLGRAG +++A + I+++ +EP+  +WGALLGACR++ + ++G  AA+ LF L P
Sbjct: 450 ACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAP 509

Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
           +  GYY+LLSN+YA+AG+W+E + +R +MKS+  KKNPG S V+    +  F+V DR
Sbjct: 510 EQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDR 566



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 150/324 (46%), Gaps = 11/324 (3%)

Query: 74  LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
           +R  + +H+RII + L  +  L   L   YA    +  A+ VF+ I  R+ +  N++I  
Sbjct: 55  IRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRS 114

Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
           Y       E + +F  M    ++ D  +F   + AC+    I  G++IHG   +  L + 
Sbjct: 115 YVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSST 174

Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
           LFV N ++  Y + G +  A  + D +  +D  SWN+L++GY      D A+ +   M  
Sbjct: 175 LFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMES 234

Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
             + +D  +  ++L A S+     +   Y  +M     K + + +  M+ +  +  +  +
Sbjct: 235 VKISHDAGTMASLLPAVSN--TTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVE 292

Query: 313 AVKLIKNLPV---EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---L 366
           AV+L   +     EPDA    ++L AC     + LG     H ++ + +     +L   L
Sbjct: 293 AVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKI--HGYIERKKLIPNLLLENAL 350

Query: 367 SNMYAEAGKWDEASKVRELMKSRE 390
            +MYA+ G  ++A  V E MKSR+
Sbjct: 351 IDMYAKCGCLEKARDVFENMKSRD 374


>gi|357495605|ref|XP_003618091.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519426|gb|AET01050.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 146/422 (34%), Positives = 250/422 (59%), Gaps = 12/422 (2%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MY++ +    +  +F  + E++ VSWN +++ F QN  + +AL LV EM       +SVT
Sbjct: 369 MYSRCNHVDTSLKVFDKMLERDAVSWNTIISAFVQNGFDEEALMLVCEMQKQKFLIDSVT 428

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--- 117
            T +L A +    L  GK+ HA +IR+G+ F+  + + L DMYAK G +  A+ +F    
Sbjct: 429 ATALLSAASNLRNLYVGKQTHAYLIRRGIQFE-GMESYLIDMYAKSGSIRTAELLFEQNC 487

Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
            S RD+ ++N +I GY+Q     +++ L  +M +  +  + V+    + AC+++ ++   
Sbjct: 488 SSDRDQATWNAIIAGYTQNGLNEKAILLLKQMLVQNVIPNAVTLASILPACSSMGSMGLA 547

Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
           +++HG +IR+ L  +++V  S+ D Y++ G I  A  +F   P K+S ++ T+++ YG  
Sbjct: 548 RQLHGFSIRRFLEKNVYVGTSLTDTYSKCGAISYAENVFLRTPEKNSVTYTTMMMCYGQH 607

Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPTEMH 296
           G    A+ L+++M   G+  D V+++AIL+AC++ GLV++G + F+ M+    +KP+  H
Sbjct: 608 GMGKRALTLYDSMLRSGIRPDAVTFVAILSACNYSGLVDEGLQIFESMEKVHKIKPSIEH 667

Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDAN---IWGALLGACRIYGNVELGAWAAEHLF 353
           Y C+ D+LGR G + +A + +K L    DAN   IWG+LLG+CR +G+ ELG   A+ L 
Sbjct: 668 YCCVADMLGRVGRVVEAYEFVKGLG--EDANTMEIWGSLLGSCRNHGHFELGKAVAKKLL 725

Query: 354 M--LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
              +  +  GY++LLSN+YAE G+W++  +VR+ MK +   K  GCSWV+    V  FV 
Sbjct: 726 NMGMDKRMAGYHVLLSNIYAEEGEWEKVDRVRKQMKEKGLHKETGCSWVEIAGFVNCFVS 785

Query: 412 ND 413
            D
Sbjct: 786 RD 787



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 182/386 (47%), Gaps = 44/386 (11%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA S +   A  +F  +  +N+V+WN ++ +F +     +A++    M   +  P+ VT
Sbjct: 165 MYA-SCQHEYALNVFDVMRRRNVVAWNTLILSFVKMNRYPQAVEAFANMINQSVMPSPVT 223

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVFNI 118
             N+ PA ++    R  K  +  + + G  +  D+F+ ++   M++  GC++ A+ VF+ 
Sbjct: 224 FVNLFPALSKLGDSRTVKMFYGFMRKFGDQYVSDVFVVSSAILMFSDVGCMDYARMVFDR 283

Query: 119 SFRDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMKH---DVVSFMGAISACANLAAI 174
                   +N +IV Y Q +   E++ +F  ++ L  +    D V+ +  ++A + L  I
Sbjct: 284 CLNKNTEIWNTMIVAYVQNNCPVEAIDVF--IQALESEEGVCDDVTLLSVLTAVSQLQQI 341

Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
           K  ++ H   I+    + + + N+++  Y+R   +D + K+FD +  +D+ SWNT+I  +
Sbjct: 342 KLAEQFHAFVIKSLPGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLERDAVSWNTIISAF 401

Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG----- 278
              G  + A+ L   M++     D V+  A+L+A S           H  L+ +G     
Sbjct: 402 VQNGFDEEALMLVCEMQKQKFLIDSVTATALLSAASNLRNLYVGKQTHAYLIRRGIQFEG 461

Query: 279 -KKYFDEMQAD--SVKPTEMHYA--CMVDL-----------LGRAGLMEDAVKLIKNLPV 322
            + Y  +M A   S++  E+ +   C  D              + GL E A+ L+K + V
Sbjct: 462 MESYLIDMYAKSGSIRTAELLFEQNCSSDRDQATWNAIIAGYTQNGLNEKAILLLKQMLV 521

Query: 323 E---PDANIWGALLGACRIYGNVELG 345
           +   P+A    ++L AC   G++ L 
Sbjct: 522 QNVIPNAVTLASILPACSSMGSMGLA 547



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 191/432 (44%), Gaps = 59/432 (13%)

Query: 4   KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP--NSVTL 61
           +  +P  A +L  ++   + V WN+++  F  N L  +AL L  +M  ++     +  T 
Sbjct: 61  REGQPHLALHLLDSLPRPSTVVWNSVIIGFICNNLPHQALLLYAKMRSNSSCSTFDPYTF 120

Query: 62  TNVLPACARGHFLRPGKEIHARIIRKGLNFDL----FLTNALTDMYAKCGCLNLAQNVFN 117
           ++ L ACA    +  GK IH+  +R   N +      + N+L +MYA C     A NVF+
Sbjct: 121 SSTLKACALTKDILTGKAIHSHFLRSHSNTNTGPSRIVYNSLLNMYASCQ-HEYALNVFD 179

Query: 118 I-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
           +   R+ V++N LI+ + + +   +++  F+ M    +    V+F+    A + L   + 
Sbjct: 180 VMRRRNVVAWNTLILSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPALSKLGDSRT 239

Query: 177 GKEIHGVTIRK---HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
            K  +G  +RK      + +FV +S +  ++  G +D A  +FD    K++  WNT+I+ 
Sbjct: 240 VKMFYGF-MRKFGDQYVSDVFVVSSAILMFSDVGCMDYARMVFDRCLNKNTEIWNTMIVA 298

Query: 234 YGMLGEVDTAINLF-EAMR-EDGVGYDPVSYIAILTACSH-------------------G 272
           Y        AI++F +A+  E+GV  D V+ +++LTA S                    G
Sbjct: 299 YVQNNCPVEAIDVFIQALESEEGVC-DDVTLLSVLTAVSQLQQIKLAEQFHAFVIKSLPG 357

Query: 273 GL----------------VEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
            L                V+   K FD+M + D+V      +  ++    + G  E+A+ 
Sbjct: 358 SLIIILNAVMVMYSRCNHVDTSLKVFDKMLERDAVS-----WNTIISAFVQNGFDEEALM 412

Query: 316 LIKNLPVEP---DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372
           L+  +  +    D+    ALL A     N+ +G     +L     Q  G    L +MYA+
Sbjct: 413 LVCEMQKQKFLIDSVTATALLSAASNLRNLYVGKQTHAYLIRRGIQFEGMESYLIDMYAK 472

Query: 373 AGKWDEASKVRE 384
           +G    A  + E
Sbjct: 473 SGSIRTAELLFE 484


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 248/443 (55%), Gaps = 34/443 (7%)

Query: 11  ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSVTLTNVLPACA 69
           A+ +F  +   N+ S+NA++  +  N     A+ +  +M    +  P+  T   V+ +CA
Sbjct: 58  ATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCA 117

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
                R G+++HA + + G        NAL DMY KCG ++ A  V+  ++ RD VS+N 
Sbjct: 118 GLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNS 177

Query: 129 LIVG-------------------------------YSQTSDCSESLSLFSEMRLLGMKHD 157
           LI G                               Y++    +++L +F EM+++G++ D
Sbjct: 178 LISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPD 237

Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
            +S +  + ACA L A++ GK IH  + +     +  V N++++ Y + G ID A  +F+
Sbjct: 238 EISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFN 297

Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
            +  KD  SW+T+I G    G+   AI +FE M++ GV  + V+++ +L+AC+H GL  +
Sbjct: 298 QMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNE 357

Query: 278 GKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
           G +YFD M+ D  ++P   HY C+VDLLGR+G +E A+  I  +P++PD+  W +LL +C
Sbjct: 358 GLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSC 417

Query: 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPG 396
           RI+ N+E+   A E L  L+P+  G Y+LL+N+YA+  KW+  S VR+L++S+  KK PG
Sbjct: 418 RIHHNLEIAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPG 477

Query: 397 CSWVQTRDEVQDFVVNDRMKTFT 419
           CS ++  + VQ+FV  D  K F+
Sbjct: 478 CSLIEVNNLVQEFVSGDDSKPFS 500



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 127/265 (47%), Gaps = 34/265 (12%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNA-------------------------------M 29
           MY K    + A  ++  + E++ VSWN+                               M
Sbjct: 150 MYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTM 209

Query: 30  VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL 89
           +  +A+      AL + REM +    P+ +++ +VLPACA+   L  GK IH    + G 
Sbjct: 210 INGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGF 269

Query: 90  NFDLFLTNALTDMYAKCGCLNLAQNVFNISF-RDEVSYNILIVGYSQTSDCSESLSLFSE 148
             +  + NAL +MYAKCGC++ A  +FN    +D +S++ +I G +       ++ +F +
Sbjct: 270 LKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFED 329

Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT-IRKHLHTHLFVANSILDFYTRSG 207
           M+  G+  + V+F+G +SACA+     +G     V  +  HL   +     ++D   RSG
Sbjct: 330 MQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSG 389

Query: 208 RIDLANKIFDCLPVK-DSASWNTLI 231
           +++ A      +P++ DS +WN+L+
Sbjct: 390 QVEQALDTILKMPMQPDSRTWNSLL 414



 Score = 42.0 bits (97), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 14/232 (6%)

Query: 152 LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211
           +G++     F+  +  C  +A +K+   IH   ++  L    F+   +LD       +D 
Sbjct: 1   MGVRELENRFVTTLRNCPKIAELKK---IHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDY 57

Query: 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM-REDGVGYDPVSYIAILTACS 270
           A  IF  L   +  S+N +I  Y    +   AI +F  M        D  ++  ++ +C+
Sbjct: 58  ATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCA 117

Query: 271 HGGLVEK-GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIW 329
            G L  + G++    +     K   +    ++D+  + G M  A ++ + +  E DA  W
Sbjct: 118 -GLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEM-TERDAVSW 175

Query: 330 GALLGACRIYGNVELGAW-AAEHLFMLKP-QHCGYYILLSNMYAEAGKWDEA 379
            +L     I G+V LG   +A  +F   P +    +  + N YA  G + +A
Sbjct: 176 NSL-----ISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADA 222


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 139/419 (33%), Positives = 249/419 (59%), Gaps = 6/419 (1%)

Query: 1   MYAKSSRPA---EASYLFHNIAEKNIVSWNAMVANFAQN-RLELKALQLVREMPIHNEFP 56
           MYAK +      ++  +F  + E N++SW A++  +AQ+   + +A++L  +M   +  P
Sbjct: 95  MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRP 154

Query: 57  NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
           N  + ++VL AC        G+++++  ++ G+     + N+L  MYA+ G +  A+  F
Sbjct: 155 NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF 214

Query: 117 NISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
           +I F ++ VSYN ++ GY++     E+  LF+E+   G+     +F   +S  A++ A+ 
Sbjct: 215 DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 274

Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
           +G++IHG  ++    ++  + N+++  Y+R G I+ A ++F+ +  ++  SW ++I G+ 
Sbjct: 275 KGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFA 334

Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
             G    A+ +F  M E G   + ++Y+A+L+ACSH G++ +G+K+F+ M  +  + P  
Sbjct: 335 KHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRM 394

Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
            HYACMVDLLGR+GL+ +A++ I ++P+  DA +W  LLGACR++GN ELG  AAE +  
Sbjct: 395 EHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILE 454

Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
            +P     YILLSN++A AG+W +  K+R+ MK R   K  GCSW++  + V  F V +
Sbjct: 455 QEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGE 513



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 173/332 (52%), Gaps = 10/332 (3%)

Query: 9   AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC 68
           A A  +F  + E+N+V+W  M+  FAQ      A+ L  +M +    P+  T ++VL AC
Sbjct: 2   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 61

Query: 69  ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC---GCLNLAQNVF-NISFRDEV 124
                L  GK++H+R+IR GL  D+ +  +L DMYAKC   G ++ ++ VF  +   + +
Sbjct: 62  TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 121

Query: 125 SYNILIVGYSQTSDC-SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGV 183
           S+  +I  Y+Q+ +C  E++ LF +M    ++ +  SF   + AC NL+    G++++  
Sbjct: 122 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 181

Query: 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
            ++  + +   V NS++  Y RSGR++ A K FD L  K+  S+N ++ GY    + + A
Sbjct: 182 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 241

Query: 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303
             LF  + + G+G    ++ ++L+  +  G + KG++    +     K  +     ++ +
Sbjct: 242 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 301

Query: 304 LGRAGLMEDAVKLIKNLPVEPDANI--WGALL 333
             R G +E A ++   +    D N+  W +++
Sbjct: 302 YSRCGNIEAAFQVFNEM---EDRNVISWTSMI 330


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  271 bits (694), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 147/425 (34%), Positives = 231/425 (54%), Gaps = 36/425 (8%)

Query: 26  WNAMVANFAQNRLE---LKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82
           +N  +  F++ R     L ++ L   M + +  PN+ T T +   C+       G++ H 
Sbjct: 57  FNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHG 116

Query: 83  RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN------------------------- 117
            +I+     D+F+ N++   Y+ CG LN A+ VF+                         
Sbjct: 117 MVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILE 176

Query: 118 -------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170
                  ++ R+++S+N++I GY+Q     E+L+LF EM++L  + +    +  +SAC+ 
Sbjct: 177 ALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQ 236

Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
           L A+  G  +H    +K +     ++ +++D Y + G IDLA + F     +D +++   
Sbjct: 237 LGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAA 296

Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADS 289
           I G  M G  + A+ LFE M+ +G+  D VSYIA+L ACSH G VEKG  YF  M     
Sbjct: 297 ISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHG 356

Query: 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAA 349
           ++P   HYACMVDLLGRAGL+E+A K + ++P++PD  IWGALLGACR+YGN E+G    
Sbjct: 357 IRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVG 416

Query: 350 EHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
             L      H G YILLSN+YAE+ K ++A +VR+ M+ R+  + PGCS ++    V +F
Sbjct: 417 SLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEF 476

Query: 410 VVNDR 414
              DR
Sbjct: 477 FSGDR 481



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 126/231 (54%), Gaps = 15/231 (6%)

Query: 10  EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
           EA  LF  + E+N +SWN M++ +AQN    +AL L REM + ++ PNS  L +VL AC+
Sbjct: 176 EALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACS 235

Query: 70  RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNI 128
           +   L  G  +H  I +K +  D  L+ AL DMYAKCG ++LA   F+ S + +VS Y  
Sbjct: 236 QLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTA 295

Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-------KEIH 181
            I G +      E+L LF +M+  G+  D VS++  + AC++   +++G        ++H
Sbjct: 296 AISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVH 355

Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLI 231
           G  IR  L  +      ++D   R+G ++ A K    +P+K D+  W  L+
Sbjct: 356 G--IRPELDHY----ACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALL 400


>gi|414884271|tpg|DAA60285.1| TPA: hypothetical protein ZEAMMB73_421255 [Zea mays]
          Length = 686

 Score =  271 bits (694), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 147/425 (34%), Positives = 239/425 (56%), Gaps = 6/425 (1%)

Query: 2   YAKSSRPAEASYLFHNI----AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
           YA S +  EA  LF  +    AE N V+WN +   + Q R    AL L+R+M       +
Sbjct: 235 YAASGQWREAVELFRQMQAEGAEANSVTWNTIAGGYIQMRDYRAALGLIRDMVRGGAEVD 294

Query: 58  SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF- 116
            VTL     AC+R  +LR GKEIH   +R   +    + NA+  MYA+C  +  A  +F 
Sbjct: 295 FVTLVIGSNACSRAGWLRLGKEIHGLAVRMQCHEIDSVVNAVITMYARCNDMERALMLFR 354

Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
            +     V++N ++ G++   D   +  LF EM    ++ + V+ +  ++ CA +A ++ 
Sbjct: 355 TMRCPGLVAWNTMLAGFALLDDAEAASRLFREMVCSDVQPNYVTVVTYLALCARVANLQH 414

Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
           G+E+H   IR+    +  + NS++D Y++SGR+ +A  +FD +  +D  S+ ++I GYGM
Sbjct: 415 GQELHAHIIRQGFKRYCLLWNSLIDMYSKSGRLSVAQNVFDTMDDRDMISFTSMIAGYGM 474

Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
            G+   ++  F+ M + G+  D +  + +L+ACSH GLV++G++ FD+M +   +KP   
Sbjct: 475 QGKGIVSLRFFKQMIDSGIMPDAIIMVTVLSACSHSGLVDEGEELFDKMVSSYGIKPQME 534

Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
           HY+CMVDL  RAGL+E A +L+   P  P + +  AL+GAC   GNV +G  +A  L  +
Sbjct: 535 HYSCMVDLYARAGLLEKAEELLNQTPFPPTSTMVAALVGACHEQGNVIIGERSARRLLEM 594

Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
           K ++ G+Y+L++NMYA AG W+E + VR+LM+     K PG +W    +    F+V DR 
Sbjct: 595 KTENAGHYVLIANMYAAAGCWNELATVRKLMRDMGVMKAPGLAWADLGNGFTPFLVGDRS 654

Query: 416 KTFTP 420
               P
Sbjct: 655 NPLAP 659



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 2/235 (0%)

Query: 1   MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
           MYA+ +    A  LF  +    +V+WN M+A FA       A +L REM   +  PN VT
Sbjct: 339 MYARCNDMERALMLFRTMRCPGLVAWNTMLAGFALLDDAEAASRLFREMVCSDVQPNYVT 398

Query: 61  LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
           +   L  CAR   L+ G+E+HA IIR+G      L N+L DMY+K G L++AQNVF+ + 
Sbjct: 399 VVTYLALCARVANLQHGQELHAHIIRQGFKRYCLLWNSLIDMYSKSGRLSVAQNVFDTMD 458

Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
            RD +S+  +I GY        SL  F +M   G+  D +  +  +SAC++   + +G+E
Sbjct: 459 DRDMISFTSMIAGYGMQGKGIVSLRFFKQMIDSGIMPDAIIMVTVLSACSHSGLVDEGEE 518

Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
           +    +  + +   +   + ++D Y R+G ++ A ++ +  P   +++    ++G
Sbjct: 519 LFDKMVSSYGIKPQMEHYSCMVDLYARAGLLEKAEELLNQTPFPPTSTMVAALVG 573



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 10/227 (4%)

Query: 44  QLVREMPIHNEFPNSVTLTNVLPACARGHF----LRPGKEIHARIIRKGLNFDLFLTNAL 99
           QL R +P     P++ T   + P  +  H     +R G ++H   +  GL+    L   L
Sbjct: 45  QLRRLLP-----PDAATQLLLHPIASLLHLHRSDIRIGLQLHGLSLSAGLSCYSHLLPHL 99

Query: 100 TDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDV 158
              Y+    L    +           YN+LI           +L+ + +M     +  D 
Sbjct: 100 LSFYSHHPSLLPTASSLAAGSTSPEPYNVLISACLNHGLPRHALAAYQKMVDKDAVPPDA 159

Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
            ++   + ACA  A +  G+ +H       +  HLF  N+++  Y + G +  A ++FD 
Sbjct: 160 FTYPKVLRACAETADLVLGRAVHVRAAAAGMDGHLFFQNALVSMYAKCGDLAAARRVFDG 219

Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265
           +  +D  SWN++I GY   G+   A+ LF  M+ +G   + V++  I
Sbjct: 220 MDNRDVVSWNSMISGYAASGQWREAVELFRQMQAEGAEANSVTWNTI 266


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.136    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,534,700,798
Number of Sequences: 23463169
Number of extensions: 262617946
Number of successful extensions: 676375
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9886
Number of HSP's successfully gapped in prelim test: 1583
Number of HSP's that attempted gapping in prelim test: 524680
Number of HSP's gapped (non-prelim): 55531
length of query: 423
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 278
effective length of database: 8,957,035,862
effective search space: 2490055969636
effective search space used: 2490055969636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 78 (34.7 bits)