BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038550
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACS----------HGGLVEKGKKYFDEMQA 287
G+V A+ L++ R +GV Y +L CS + GL +G F +M
Sbjct: 40 GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL-SRGFDIFKQMIV 98
Query: 288 DSVKPTEMHYACMVDLLGRAGLME---DAVKLIKNLPVEPDANIWG-ALLGACR 337
D V P E + L E D VK +K ++P +G AL G CR
Sbjct: 99 DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACS----------HGGLVEKGKKYFDEMQA 287
G+V A+ L++ R +GV Y +L CS + GL +G F +
Sbjct: 40 GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL-SRGFDIFKQXIV 98
Query: 288 DSVKPTEMHYACMVDLLGRAGLME---DAVKLIKNLPVEPDANIWG-ALLGACR 337
D V P E + L E D VK K ++P +G AL G CR
Sbjct: 99 DKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCR 152
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 23/107 (21%)
Query: 310 MEDAVKLIKNLPVEPDANIW-------GALLGAC------RIYGNVELGAWAAEHLFMLK 356
M+D++ L+ +P PD+ W G LL +C RI+G E +W + +
Sbjct: 1 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWG-TEGDSWICKSVLSEG 59
Query: 357 PQH---------CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394
Q CG Y+ ++ A W + E + + E +N
Sbjct: 60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHEN 106
>pdb|3KF5|A Chain A, Structure Of Invertase From Schwanniomyces Occidentalis
pdb|3KF5|B Chain B, Structure Of Invertase From Schwanniomyces Occidentalis
Length = 512
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/176 (18%), Positives = 64/176 (36%), Gaps = 22/176 (12%)
Query: 36 NRLELKALQLVREMPIHNEFPNSVTL-----------TNVLPACARGHFLRPGKEIHARI 84
++L+ K ++L + PI F S L NV P L +E+++ +
Sbjct: 342 DKLKKKNVKLTNKKPIKTNFKGSTGLFDFNITFKVLNLNVSPGKTHFDILINSQELNSSV 401
Query: 85 IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLS 144
+ FD + + +++ N+ F + + + Y + D + L
Sbjct: 402 DSIKIGFD-----------SSQSSFYIDRHIPNVEFPRKQFFTDKLAAYLEPLDYDQDLR 450
Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
+FS ++ + F A N + +GK H + I LF S++
Sbjct: 451 VFSLYGIVDKNIIELYFNDGTVAMTNTFFMGEGKYPHDIQIVTDTEEPLFELESVI 506
>pdb|3KF3|A Chain A, Structure Of Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructose
pdb|3KF3|B Chain B, Structure Of Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructose
Length = 509
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/176 (18%), Positives = 64/176 (36%), Gaps = 22/176 (12%)
Query: 36 NRLELKALQLVREMPIHNEFPNSVTL-----------TNVLPACARGHFLRPGKEIHARI 84
++L+ K ++L + PI F S L NV P L +E+++ +
Sbjct: 339 DKLKKKNVKLTNKKPIKTNFKGSTGLFDFNITFKVLNLNVSPGKTHFDILINSQELNSSV 398
Query: 85 IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLS 144
+ FD + + +++ N+ F + + + Y + D + L
Sbjct: 399 DSIKIGFD-----------SSQSSFYIDRHIPNVEFPRKQFFTDKLAAYLEPLDYDQDLR 447
Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
+FS ++ + F A N + +GK H + I LF S++
Sbjct: 448 VFSLYGIVDKNIIELYFNDGTVAMTNTFFMGEGKYPHDIQIVTDTEEPLFELESVI 503
>pdb|3VND|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|C Chain C, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|D Chain D, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|E Chain E, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|F Chain F, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|G Chain G, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|H Chain H, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
Length = 267
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM----LGEVDTAI 244
L+ +L AN I +FYT++ + + + +PV++SA ++ +G+ + +
Sbjct: 102 LYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADA 161
Query: 245 NLFEAMREDGVGY 257
+ + + E G GY
Sbjct: 162 DTLKMVSEQGEGY 174
>pdb|3U75|A Chain A, Structure Of E230a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructosylnystose
pdb|3U75|B Chain B, Structure Of E230a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructosylnystose
pdb|3U75|C Chain C, Structure Of E230a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructosylnystose
pdb|3U75|D Chain D, Structure Of E230a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructosylnystose
Length = 535
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/176 (18%), Positives = 64/176 (36%), Gaps = 22/176 (12%)
Query: 36 NRLELKALQLVREMPIHNEFPNSVTL-----------TNVLPACARGHFLRPGKEIHARI 84
++L+ K ++L + PI F S L NV P L +E+++ +
Sbjct: 365 DKLKKKNVKLTNKKPIKTNFKGSTGLFDFNITFKVLNLNVSPGKTHFDILINSQELNSSV 424
Query: 85 IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLS 144
+ FD + + +++ N+ F + + + Y + D + L
Sbjct: 425 DSIKIGFD-----------SSQSSFYIDRHIPNVEFPRKQFFTDKLAAYLEPLDYDQDLR 473
Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
+FS ++ + F A N + +GK H + I LF S++
Sbjct: 474 VFSLYGIVDKNIIELYFNDGTVAMTNTFFMGEGKYPHDIQIVTDTEEPLFELESVI 529
>pdb|3U14|A Chain A, Structure Of D50a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Inulin
pdb|3U14|B Chain B, Structure Of D50a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Inulin
Length = 535
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/176 (18%), Positives = 64/176 (36%), Gaps = 22/176 (12%)
Query: 36 NRLELKALQLVREMPIHNEFPNSVTL-----------TNVLPACARGHFLRPGKEIHARI 84
++L+ K ++L + PI F S L NV P L +E+++ +
Sbjct: 365 DKLKKKNVKLTNKKPIKTNFKGSTGLFDFNITFKVLNLNVSPGKTHFDILINSQELNSSV 424
Query: 85 IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLS 144
+ FD + + +++ N+ F + + + Y + D + L
Sbjct: 425 DSIKIGFD-----------SSQSSFYIDRHIPNVEFPRKQFFTDKLAAYLEPLDYDQDLR 473
Query: 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
+FS ++ + F A N + +GK H + I LF S++
Sbjct: 474 VFSLYGIVDKNIIELYFNDGTVAMTNTFFMGEGKYPHDIQIVTDTEEPLFELESVI 529
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
P E D ++G GA ++ A E P H G LL E D +
Sbjct: 89 PAERDGRLYGR--GAADXKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDALDGTT 146
Query: 381 KVRELMKSRE 390
KV +++K+R+
Sbjct: 147 KVVDVLKARD 156
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 224 SASWNTLILGYGMLGEVDTAINLFEAM-REDGVGYDPVSYIAILTACS-HGGLVEKGKKY 281
SA++ LGY +LG V+T + E M R + Y+ I A + H L++K K+
Sbjct: 144 SATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVHDELIDKIKET 203
Query: 282 FDEMQADSVKPTEMHY 297
F + VKPT +Y
Sbjct: 204 FSQ-----VKPTTYNY 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,506,092
Number of Sequences: 62578
Number of extensions: 500819
Number of successful extensions: 898
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 896
Number of HSP's gapped (non-prelim): 14
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)