BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038550
(423 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 337 bits (864), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/418 (40%), Positives = 265/418 (63%), Gaps = 7/418 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY+K A +F ++++++VS+ +M+A +A+ L +A++L EM P+ T
Sbjct: 340 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
+T VL CAR L GK +H I L FD+F++NAL DMYAKCG + A+ VF+ +
Sbjct: 400 VTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMR 459
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH---DVVSFMGAISACANLAAIKQ 176
+D +S+N +I GYS+ +E+LSLF+ LL K D + + ACA+L+A +
Sbjct: 460 VKDIISWNTIIGGYSKNCYANEALSLFN--LLLEEKRFSPDERTVACVLPACASLSAFDK 517
Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
G+EIHG +R + VANS++D Y + G + LA+ +FD + KD SW +I GYGM
Sbjct: 518 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 577
Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
G AI LF MR+ G+ D +S++++L ACSH GLV++G ++F+ M+ + ++PT
Sbjct: 578 HGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 637
Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
HYAC+VD+L R G + A + I+N+P+ PDA IWGALL CRI+ +V+L AE +F L
Sbjct: 638 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 697
Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
+P++ GYY+L++N+YAEA KW++ ++R+ + R +KNPGCSW++ + V FV D
Sbjct: 698 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGD 755
Score = 129 bits (324), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 166/374 (44%), Gaps = 50/374 (13%)
Query: 60 TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
TL +VL CA L+ GKE+ I G D L + L+ MY CG L A VF+ +
Sbjct: 96 TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
+ +NIL+ +++ D S S+ LF +M G++ D +F + ++L ++ G+
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGE 215
Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
++HG ++ V NS++ FY ++ R+D A K+FD + +D SWN++I GY G
Sbjct: 216 QLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNG 275
Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG-------------------- 278
+ +++F M G+ D + +++ C+ L+ G
Sbjct: 276 LAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCN 335
Query: 279 ---------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
K F EM SV + Y M+ R GL +AVKL + + E
Sbjct: 336 TLLDMYSKCGDLDSAKAVFREMSDRSV----VSYTSMIAGYAREGLAGEAVKLFEEMEEE 391
Query: 324 ---PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN----MYAEAGKW 376
PD A+L C Y ++ G E +K G+ I +SN MYA+ G
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHE---WIKENDLGFDIFVSNALMDMYAKCGSM 448
Query: 377 DEASKVRELMKSRE 390
EA V M+ ++
Sbjct: 449 QEAELVFSEMRVKD 462
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 164/336 (48%), Gaps = 2/336 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY EAS +F + + + WN ++ A++ ++ L ++M +S T
Sbjct: 138 MYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYT 197
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
+ V + + + G+++H I++ G + N+L Y K ++ A+ VF+ ++
Sbjct: 198 FSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMT 257
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
RD +S+N +I GY + LS+F +M + G++ D+ + + + CA+ I G+
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA 317
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
+H + ++ N++LD Y++ G +D A +F + + S+ ++I GY G
Sbjct: 318 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGL 377
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
A+ LFE M E+G+ D + A+L C+ L+++GK+ + ++ + +
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNA 437
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
++D+ + G M++A + + V+ D W ++G
Sbjct: 438 LMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGG 472
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 323 bits (829), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 166/414 (40%), Positives = 255/414 (61%), Gaps = 10/414 (2%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
YA+S + EA LF +++ +W AMV+ + QNR+ +A +L +MP NE V+
Sbjct: 260 YAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNE----VSW 315
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
+L +G + KE+ + + ++ N + YA+CG ++ A+N+F+ +
Sbjct: 316 NAMLAGYVQGERMEMAKELFDVMPCRNVS----TWNTMITGYAQCGKISEAKNLFDKMPK 371
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
RD VS+ +I GYSQ+ E+L LF +M G + + SF A+S CA++ A++ GK++
Sbjct: 372 RDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQL 431
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
HG ++ T FV N++L Y + G I+ AN +F + KD SWNT+I GY G
Sbjct: 432 HGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFG 491
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
+ A+ FE+M+ +G+ D + +A+L+ACSH GLV+KG++YF M D V P HYAC
Sbjct: 492 EVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYAC 551
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
MVDLLGRAGL+EDA L+KN+P EPDA IWG LLGA R++GN EL AA+ +F ++P++
Sbjct: 552 MVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPEN 611
Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
G Y+LLSN+YA +G+W + K+R M+ + KK PG SW++ +++ F V D
Sbjct: 612 SGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD 665
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 140/306 (45%), Gaps = 44/306 (14%)
Query: 11 ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP-------------------- 50
A LF + E+++VSWN M+ + +NR KA +L MP
Sbjct: 114 ARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCV 173
Query: 51 -----IHNEFP--NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMY 103
+ + P N V+ +L A + + E + + N+ L N L +
Sbjct: 174 DDARSVFDRMPEKNDVSWNALLSAYVQNSKM----EEACMLFKSRENWALVSWNCLLGGF 229
Query: 104 AKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM 162
K + A+ F+ ++ RD VS+N +I GY+Q+ E+ LF E + DV ++
Sbjct: 230 VKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPV----QDVFTWT 285
Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK 222
+S +++ +E+ K + N++L Y + R+++A ++FD +P +
Sbjct: 286 AMVSGYIQNRMVEEAREL----FDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCR 341
Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282
+ ++WNT+I GY G++ A NLF+ M + DPVS+ A++ S G + + F
Sbjct: 342 NVSTWNTMITGYAQCGKISEAKNLFDKMPKR----DPVSWAAMIAGYSQSGHSFEALRLF 397
Query: 283 DEMQAD 288
+M+ +
Sbjct: 398 VQMERE 403
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 156/337 (46%), Gaps = 30/337 (8%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN-RLELKALQLVREMPIHNEFPNSVT 60
Y ++ R EA +F + + VS+N M++ + +N EL A +L EMP + V+
Sbjct: 74 YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFEL-ARKLFDEMPER----DLVS 128
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
++ R L +E+ + + D+ N + YA+ GC++ A++VF+ +
Sbjct: 129 WNVMIKGYVRNRNLGKARELFEIMPER----DVCSWNTMLSGYAQNGCVDDARSVFDRMP 184
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
+++VS+N L+ Y Q S E+ LF + VS+ C +K+ K
Sbjct: 185 EKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL----VSW-----NCLLGGFVKKKKI 235
Query: 180 IHGVTIRKHLHTHLFVA-NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
+ ++ V+ N+I+ Y +SG+ID A ++FD PV+D +W ++ GY
Sbjct: 236 VEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNR 295
Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
V+ A LF+ M E + VS+ A+L G +E K+ FD M +V +
Sbjct: 296 MVEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVST----WN 347
Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
M+ + G + +A L +P + D W A++
Sbjct: 348 TMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 383
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 103/263 (39%), Gaps = 55/263 (20%)
Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
D +N+ I Y +T C+E+L +F M + VS+ G IS
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRMP----RWSSVSYNGMISG-------------- 104
Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
Y R+G +LA K+FD +P +D SWN +I GY +
Sbjct: 105 ---------------------YLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLG 143
Query: 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301
A LFE M E D S+ +L+ + G V+ + FD M + ++ + ++
Sbjct: 144 KARELFEIMPER----DVCSWNTMLSGYAQNGCVDDARSVFDRMP----EKNDVSWNALL 195
Query: 302 DLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--LKPQH 359
+ ME+A L K+ W + C + G V+ F + +
Sbjct: 196 SAYVQNSKMEEACMLFKS------RENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRD 249
Query: 360 CGYYILLSNMYAEAGKWDEASKV 382
+ + YA++GK DEA ++
Sbjct: 250 VVSWNTIITGYAQSGKIDEARQL 272
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY K EA+ LF +A K+IVSWN M+A ++++ AL+ M P+ T
Sbjct: 453 MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDAT 512
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
+ VL AC+ + G++ + + G+ + + D+ + G L A N+ N+
Sbjct: 513 MVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM 572
Query: 119 SFRDEVSYNILIVGYSQTSDCSE 141
F + + ++G S+ +E
Sbjct: 573 PFEPDAAIWGTLLGASRVHGNTE 595
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 315 bits (808), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 154/403 (38%), Positives = 252/403 (62%), Gaps = 2/403 (0%)
Query: 14 LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
+F + K++VS+N ++A +AQ+ + AL++VREM + P+S TL++VLP +
Sbjct: 198 VFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVD 257
Query: 74 LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF-RDEVSYNILIVG 132
+ GKEIH +IRKG++ D+++ ++L DMYAK + ++ VF+ + RD +S+N L+ G
Sbjct: 258 VIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAG 317
Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
Y Q +E+L LF +M +K V+F I ACA+LA + GK++HG +R ++
Sbjct: 318 YVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSN 377
Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
+F+A++++D Y++ G I A KIFD + V D SW +I+G+ + G A++LFE M+
Sbjct: 378 IFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKR 437
Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HYACMVDLLGRAGLME 311
GV + V+++A+LTACSH GLV++ YF+ M E+ HYA + DLLGRAG +E
Sbjct: 438 QGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLE 497
Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371
+A I + VEP ++W LL +C ++ N+EL AE +F + ++ G Y+L+ NMYA
Sbjct: 498 EAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYA 557
Query: 372 EAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
G+W E +K+R M+ + +K P CSW++ +++ FV DR
Sbjct: 558 SNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDR 600
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 38/364 (10%)
Query: 15 FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL 74
F + +++W +++ F L KAL EM P+ +VL +C L
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121
Query: 75 RPGKEIHARIIRKGLNFDLFLTNALTDMYAKC---GCLNLAQNVFN-------------- 117
R G+ +H I+R G++ DL+ NAL +MYAK G NVF+
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181
Query: 118 --------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157
+ +D VSYN +I GY+Q+ ++L + EM +K D
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241
Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
+ + + + +GKEIHG IRK + + +++ +S++D Y +S RI+ + ++F
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFS 301
Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
L +D SWN+L+ GY G + A+ LF M V V++ +++ AC+H +
Sbjct: 302 RLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHL 361
Query: 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
GK+ + + +VD+ + G ++ A K+ + V + + W A++
Sbjct: 362 GKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS-WTAIIMGHA 420
Query: 338 IYGN 341
++G+
Sbjct: 421 LHGH 424
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 139/234 (59%), Gaps = 3/234 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAKS+R ++ +F + ++ +SWN++VA + QN +AL+L R+M P +V
Sbjct: 286 MYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVA 345
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
++V+PACA L GK++H ++R G ++F+ +AL DMY+KCG + A+ +F+ ++
Sbjct: 346 FSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMN 405
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-K 178
DEVS+ +I+G++ E++SLF EM+ G+K + V+F+ ++AC+++ + +
Sbjct: 406 VLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWG 465
Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
+ +T L+ L ++ D R+G+++ A + V+ + S W+TL+
Sbjct: 466 YFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLL 519
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 313 bits (803), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 154/411 (37%), Positives = 245/411 (59%), Gaps = 3/411 (0%)
Query: 10 EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
+A LF + EK+ VSW AM+ AQN L +A++ REM + + +VLPAC
Sbjct: 223 DALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACG 281
Query: 70 RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
+ GK+IHA IIR +++ +AL DMY KC CL+ A+ VF+ + ++ VS+
Sbjct: 282 GLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTA 341
Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
++VGY QT E++ +F +M+ G+ D + AISACAN++++++G + HG I
Sbjct: 342 MVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSG 401
Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
L ++ V+NS++ Y + G ID + ++F+ + V+D+ SW ++ Y G I LF+
Sbjct: 402 LIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFD 461
Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
M + G+ D V+ +++ACS GLVEKG++YF M ++ + P+ HY+CM+DL R+
Sbjct: 462 KMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRS 521
Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
G +E+A++ I +P PDA W LL ACR GN+E+G WAAE L L P H Y LLS
Sbjct: 522 GRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLS 581
Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
++YA GKWD +++R M+ + KK PG SW++ + ++ F +D +
Sbjct: 582 SIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPY 632
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/377 (24%), Positives = 178/377 (47%), Gaps = 45/377 (11%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP---NS 58
Y+K+ +E F + +++ V+WN ++ ++ + L A++ M +F
Sbjct: 82 YSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM--MRDFSANLTR 139
Query: 59 VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-- 116
VTL +L + + GK+IH ++I+ G L + + L MYA GC++ A+ VF
Sbjct: 140 VTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYG 199
Query: 117 -----NISF------------------------RDEVSYNILIVGYSQTSDCSESLSLFS 147
+ + +D VS+ +I G +Q E++ F
Sbjct: 200 LDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFR 259
Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
EM++ G+K D F + AC L AI +GK+IH IR + H++V ++++D Y +
Sbjct: 260 EMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCK 319
Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267
+ A +FD + K+ SW +++GYG G + A+ +F M+ G+ D + ++
Sbjct: 320 CLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAIS 379
Query: 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC----MVDLLGRAGLMEDAVKLIKNLPVE 323
AC++ +E+G ++ ++ +HY +V L G+ G ++D+ +L + V
Sbjct: 380 ACANVSSLEEGSQF----HGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR 435
Query: 324 PDANIWGALLGACRIYG 340
DA W A++ A +G
Sbjct: 436 -DAVSWTAMVSAYAQFG 451
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 123/234 (52%), Gaps = 3/234 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY K A +F + +KN+VSW AMV + Q +A+++ +M P+ T
Sbjct: 314 MYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYT 373
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
L + ACA L G + H + I GL + ++N+L +Y KCG ++ + +FN ++
Sbjct: 374 LGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMN 433
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
RD VS+ ++ Y+Q E++ LF +M G+K D V+ G ISAC+ +++G+
Sbjct: 434 VRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQR 493
Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KDSASWNTLI 231
+ ++ + + + ++D ++RSGR++ A + + +P D+ W TL+
Sbjct: 494 YFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLL 547
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 170/419 (40%), Gaps = 85/419 (20%)
Query: 45 LVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104
++R +P +P + N++ A A L R+ + +LF N L Y+
Sbjct: 32 IIRALP----YPETFLYNNIVHAYA----LMKSSTYARRVFDRIPQPNLFSWNNLLLAYS 83
Query: 105 KCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFM 162
K G ++ ++ F + RD V++N+LI GYS + ++ ++ M R V+ M
Sbjct: 84 KAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLM 143
Query: 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF------ 216
+ ++ + GK+IHG I+ ++L V + +L Y G I A K+F
Sbjct: 144 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDR 203
Query: 217 -------------------DCLPV-----KDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
D L + KDS SW +I G G AI F M+
Sbjct: 204 NTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKV 263
Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKK---------YFDEMQADSV------KPTEMHY 297
G+ D + ++L AC G + +GK+ + D + S K +HY
Sbjct: 264 QGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHY 323
Query: 298 A----------------CMVDLLGRAGLMEDAVKLIKNLP---VEPDANIWGALLGACRI 338
A MV G+ G E+AVK+ ++ ++PD G + AC
Sbjct: 324 AKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACAN 383
Query: 339 YGNVELGAWAAEHLFMLKPQHCG--YYILLSN----MYAEAGKWDEASKVRELMKSREA 391
++E G+ F K G +Y+ +SN +Y + G D+++++ M R+A
Sbjct: 384 VSSLEEGS-----QFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDA 437
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 165 ISACANLAAIKQG---KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
I C L A Q K IHG IR + F+ N+I+ Y A ++FD +P
Sbjct: 10 IKQCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQ 69
Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
+ SWN L+L Y G + + FE + + D V++ ++ S GLV K
Sbjct: 70 PNLFSWNNLLLAYSKAGLISEMESTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKA 125
Query: 282 FDEMQAD 288
++ M D
Sbjct: 126 YNTMMRD 132
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/431 (38%), Positives = 252/431 (58%), Gaps = 18/431 (4%)
Query: 2 YAKSSRPAEASYLFHNIAEKNI----VSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
Y++ R +A LF + E+ I V+W+A ++ +AQ L +AL + R+M PN
Sbjct: 305 YSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364
Query: 58 SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF-------DLFLTNALTDMYAKCGCLN 110
VTL +VL CA L GKEIH I+ ++ + + N L DMYAKC ++
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVD 424
Query: 111 LAQNVFNI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFMGAI 165
A+ +F+ RD V++ ++I GYSQ D +++L L SEM + + + A+
Sbjct: 425 TARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484
Query: 166 SACANLAAIKQGKEIHGVTIRKHLH-THLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
ACA+LAA++ GK+IH +R + LFV+N ++D Y + G I A +FD + K+
Sbjct: 485 VACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNE 544
Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
+W +L+ GYGM G + A+ +F+ MR G D V+ + +L ACSH G++++G +YF+
Sbjct: 545 VTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR 604
Query: 285 MQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
M+ V P HYAC+VDLLGRAG + A++LI+ +P+EP +W A L CRI+G VE
Sbjct: 605 MKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVE 664
Query: 344 LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTR 403
LG +AAE + L H G Y LLSN+YA AG+W + +++R LM+ + KK PGCSWV+
Sbjct: 665 LGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGI 724
Query: 404 DEVQDFVVNDR 414
F V D+
Sbjct: 725 KGTTTFFVGDK 735
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/394 (27%), Positives = 188/394 (47%), Gaps = 54/394 (13%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF---PN 57
MY++ ++A +F ++ ++VSWN+++ ++A+ AL++ M NEF P+
Sbjct: 171 MYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMT--NEFGCRPD 228
Query: 58 SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF- 116
++TL NVLP CA GK++H + + ++F+ N L DMYAKCG ++ A VF
Sbjct: 229 NITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFS 288
Query: 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI----------- 165
N+S +D VS+N ++ GYSQ +++ LF +M+ +K DVV++ AI
Sbjct: 289 NMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYE 348
Query: 166 ------------------------SACANLAAIKQGKEIH------GVTIRKHLH-THLF 194
S CA++ A+ GKEIH + +RK+ H
Sbjct: 349 ALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENM 408
Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVK--DSASWNTLILGYGMLGEVDTAINLFEAMRE 252
V N ++D Y + ++D A +FD L K D +W +I GY G+ + A+ L M E
Sbjct: 409 VINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468
Query: 253 DGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-CMVDLLGRAGL 309
+ P ++ L AC+ + GK+ + + + C++D+ + G
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGS 528
Query: 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
+ DA + N+ + + W +L+ ++G E
Sbjct: 529 ISDARLVFDNMMAKNEVT-WTSLMTGYGMHGYGE 561
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 146/279 (52%), Gaps = 2/279 (0%)
Query: 19 AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78
++ + WN+++ ++ N K L L M + P++ T V AC +R G+
Sbjct: 88 SDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGE 147
Query: 79 EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTS 137
HA + G ++F+ NAL MY++C L+ A+ VF+ +S D VS+N +I Y++
Sbjct: 148 SAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLG 207
Query: 138 DCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
+L +FS M G + D ++ + + CA+L GK++H + + ++FV
Sbjct: 208 KPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVG 267
Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
N ++D Y + G +D AN +F + VKD SWN ++ GY +G + A+ LFE M+E+ +
Sbjct: 268 NCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIK 327
Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
D V++ A ++ + GL + +M + +KP E+
Sbjct: 328 MDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEV 366
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 126/270 (46%), Gaps = 6/270 (2%)
Query: 78 KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV---FNISFRDEVSYNILIVGYS 134
K IH +++ G+ L LT+ L Y GCL+ A ++ F S +N LI Y
Sbjct: 45 KLIHQKLLSFGI-LTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYG 103
Query: 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF 194
++ L LF M L D +F AC +++++ G+ H +++ +++F
Sbjct: 104 DNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVF 163
Query: 195 VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM-RED 253
V N+++ Y+R + A K+FD + V D SWN++I Y LG+ A+ +F M E
Sbjct: 164 VGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEF 223
Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
G D ++ + +L C+ G GK+ + C+VD+ + G+M++A
Sbjct: 224 GCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEA 283
Query: 314 VKLIKNLPVEPDANIWGALLGACRIYGNVE 343
+ N+ V+ D W A++ G E
Sbjct: 284 NTVFSNMSVK-DVVSWNAMVAGYSQIGRFE 312
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK ++A +F N+ KN V+W +++ + + +AL + EM + VT
Sbjct: 522 MYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVT 581
Query: 61 LTNVLPACARGHFLRPGKEIHARI 84
L VL AC+ + G E R+
Sbjct: 582 LLVVLYACSHSGMIDQGMEYFNRM 605
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/414 (36%), Positives = 245/414 (59%), Gaps = 1/414 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK EA +F + +++ V+W +++ ++Q+ AL +M PN T
Sbjct: 104 MYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFT 163
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
L++V+ A A G ++H ++ G + ++ + +AL D+Y + G ++ AQ VF+ +
Sbjct: 164 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALE 223
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
R++VS+N LI G+++ S ++L LF M G + S+ AC++ ++QGK
Sbjct: 224 SRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKW 283
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
+H I+ F N++LD Y +SG I A KIFD L +D SWN+L+ Y G
Sbjct: 284 VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGF 343
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
A+ FE MR G+ + +S++++LTACSH GL+++G Y++ M+ D + P HY
Sbjct: 344 GKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVT 403
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
+VDLLGRAG + A++ I+ +P+EP A IW ALL ACR++ N ELGA+AAEH+F L P
Sbjct: 404 VVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDD 463
Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
G +++L N+YA G+W++A++VR+ MK KK P CSWV+ + + FV ND
Sbjct: 464 PGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVAND 517
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 161/342 (47%), Gaps = 10/342 (2%)
Query: 49 MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
+P F N++ L C L G+ +HA I++ D+ + N L +MYAKCG
Sbjct: 56 IPADRRFYNTL-----LKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGS 110
Query: 109 LNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
L A+ VF + RD V++ LI GYSQ ++L F++M G + + I A
Sbjct: 111 LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKA 170
Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
A G ++HG ++ +++ V +++LD YTR G +D A +FD L ++ SW
Sbjct: 171 AAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSW 230
Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
N LI G+ + A+ LF+ M DG SY ++ ACS G +E+GK M
Sbjct: 231 NALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 290
Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAW 347
K ++D+ ++G + DA K+ L + D W +LL A +G + W
Sbjct: 291 SGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRL-AKRDVVSWNSLLTAYAQHGFGKEAVW 349
Query: 348 AAEHL--FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
E + ++P + +L+ + +G DE ELMK
Sbjct: 350 WFEEMRRVGIRPNEISFLSVLTAC-SHSGLLDEGWHYYELMK 390
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 156/416 (37%), Positives = 250/416 (60%), Gaps = 3/416 (0%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
YAK + A +FH I K + SWNA++ AQ+ +L +M I P+S T+
Sbjct: 440 YAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTV 499
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
++L AC++ LR GKE+H IIR L DLF+ ++ +Y CG L Q +F+ +
Sbjct: 500 CSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 559
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
+ VS+N +I GY Q +L +F +M L G++ +S M AC+ L +++ G+E
Sbjct: 560 KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 619
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
H ++ L F+A S++D Y ++G I ++K+F+ L K +ASWN +I+GYG+ G
Sbjct: 620 HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLA 679
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
AI LFE M+ G D ++++ +LTAC+H GL+ +G +Y D+M++ +KP HYAC
Sbjct: 680 KEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYAC 739
Query: 300 MVDLLGRAGLMEDAVKLI-KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
++D+LGRAG ++ A++++ + + E D IW +LL +CRI+ N+E+G A LF L+P+
Sbjct: 740 VIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPE 799
Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
Y+LLSN+YA GKW++ KVR+ M +K+ GCSW++ +V FVV +R
Sbjct: 800 KPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGER 855
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 148/286 (51%), Gaps = 7/286 (2%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE----FPN 57
Y +A LF + E+N+VSWN+M+ F+ N ++ L+ EM N P+
Sbjct: 232 YGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPD 291
Query: 58 SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
TL VLP CAR + GK +H ++ L+ +L L NAL DMY+KCGC+ AQ +F
Sbjct: 292 VATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFK 351
Query: 118 I-SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAI 174
+ + ++ VS+N ++ G+S D + + +M G +K D V+ + A+ C + + +
Sbjct: 352 MNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL 411
Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
KE+H ++++ + VAN+ + Y + G + A ++F + K SWN LI G+
Sbjct: 412 PSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGH 471
Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
+ +++ M+ G+ D + ++L+ACS + GK+
Sbjct: 472 AQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE 517
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 157/347 (45%), Gaps = 17/347 (4%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
MYA P ++ ++F + KN+ WNA+++++++N L + L+ EM + P+
Sbjct: 129 MYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHF 188
Query: 60 TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI- 118
T V+ ACA + G +H +++ GL D+F+ NAL Y G + A +F+I
Sbjct: 189 TYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIM 248
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL----GMKHDVVSFMGAISACANLAAI 174
R+ VS+N +I +S ES L EM DV + + + CA I
Sbjct: 249 PERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREI 308
Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
GK +HG ++ L L + N+++D Y++ G I A IF K+ SWNT++ G+
Sbjct: 309 GLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGF 368
Query: 235 GMLGEVDTAINLFEAMREDG--VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP 292
G+ ++ M G V D V+ + + C H + K E+ S+K
Sbjct: 369 SAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLK----ELHCYSLKQ 424
Query: 293 ----TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
E+ V + G + A ++ + + N W AL+G
Sbjct: 425 EFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKT-VNSWNALIGG 470
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 125/264 (47%), Gaps = 15/264 (5%)
Query: 30 VANFAQNRLELKALQLVREMPIHNEFPNSV------TLTNVLPACARGHFLRPGKEIHAR 83
++NF + K+ + V+E +E + L +L A + + G++IH
Sbjct: 50 ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQL 109
Query: 84 II--RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCS 140
+ + N D+ T +T MYA CG + ++ VF+ + ++ +N +I YS+
Sbjct: 110 VSGSTRLRNDDVLCTRIIT-MYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYD 168
Query: 141 ESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
E L F EM + D ++ I ACA ++ + G +HG+ ++ L +FV N++
Sbjct: 169 EVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNAL 228
Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF-EAMREDGVGY- 257
+ FY G + A ++FD +P ++ SWN++I + G + + L E M E+G G
Sbjct: 229 VSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAF 288
Query: 258 --DPVSYIAILTACSHGGLVEKGK 279
D + + +L C+ + GK
Sbjct: 289 MPDVATLVTVLPVCAREREIGLGK 312
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK+ ++S +F+ + EK+ SWNAM+ + + L +A++L EM P+ +T
Sbjct: 641 MYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLT 700
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
VL AC + G ++ GL +L + DM + G L+ A V
Sbjct: 701 FLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEE 760
Query: 120 FRDEVSYNI 128
+E I
Sbjct: 761 MSEEADVGI 769
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 306 bits (785), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 159/454 (35%), Positives = 251/454 (55%), Gaps = 40/454 (8%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY+K +A +F + ++N+VSWN+++ F QN ++AL + + M P+ VT
Sbjct: 196 MYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVT 255
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
L +V+ ACA ++ G+E+H R+++ L D+ L+NA DMYAKC + A+ +F+
Sbjct: 256 LASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSM 315
Query: 118 ------------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
++ R+ VS+N LI GY+Q + E+LSLF
Sbjct: 316 PIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC 375
Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH------GVTIRKHLHTHLFVANSILD 201
++ + SF + ACA+LA + G + H G + +FV NS++D
Sbjct: 376 LLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLID 435
Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
Y + G ++ +F + +D SWN +I+G+ G + A+ LF M E G D ++
Sbjct: 436 MYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHIT 495
Query: 262 YIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
I +L+AC H G VE+G+ YF M D V P HY CMVDLLGRAG +E+A +I+ +
Sbjct: 496 MIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEM 555
Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
P++PD+ IWG+LL AC+++ N+ LG + AE L ++P + G Y+LLSNMYAE GKW++
Sbjct: 556 PMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVM 615
Query: 381 KVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
VR+ M+ K PGCSW++ + F+V D+
Sbjct: 616 NVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDK 649
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 157/291 (53%), Gaps = 6/291 (2%)
Query: 10 EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
EA LF ++ E++ +WN+MV+ FAQ+ +AL M N + +VL AC+
Sbjct: 104 EADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACS 163
Query: 70 RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
+ + G ++H+ I + D+++ +AL DMY+KCG +N AQ VF+ + R+ VS+N
Sbjct: 164 GLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNS 223
Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK- 187
LI + Q E+L +F M ++ D V+ ISACA+L+AIK G+E+HG ++
Sbjct: 224 LITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKND 283
Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
L + ++N+ +D Y + RI A IFD +P+++ + ++I GY M A +F
Sbjct: 284 KLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMF 343
Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
M E V VS+ A++ + G E+ F ++ +SV PT +A
Sbjct: 344 TKMAERNV----VSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFA 390
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 147/304 (48%), Gaps = 34/304 (11%)
Query: 53 NEFPNSVTLTNVLPACARGHFLRP-GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL 111
+ F +S +L +C + + +HA +I+ G + ++F+ N L D Y+KCG L
Sbjct: 14 SSFTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLED 73
Query: 112 AQNVFN--------------------------------ISFRDEVSYNILIVGYSQTSDC 139
+ VF+ + RD+ ++N ++ G++Q C
Sbjct: 74 GRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRC 133
Query: 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199
E+L F+ M G + SF +SAC+ L + +G ++H + + + +++ +++
Sbjct: 134 EEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSAL 193
Query: 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
+D Y++ G ++ A ++FD + ++ SWN+LI + G A+++F+ M E V D
Sbjct: 194 VDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDE 253
Query: 260 VSYIAILTACSHGGLVEKGKKYFDE-MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
V+ ++++AC+ ++ G++ ++ D ++ + VD+ + +++A +
Sbjct: 254 VTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFD 313
Query: 319 NLPV 322
++P+
Sbjct: 314 SMPI 317
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 301 bits (772), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 256/428 (59%), Gaps = 15/428 (3%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPNSV 59
MY + +F + ++ I WNAM+A ++QN + +AL L M NS
Sbjct: 347 MYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANST 406
Query: 60 TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
T+ V+PAC R + IH ++++GL+ D F+ N L DMY++ G +++A +F +
Sbjct: 407 TMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 466
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-----------GMKHDVVSFMGAISA 167
RD V++N +I GY + ++L L +M+ L +K + ++ M + +
Sbjct: 467 EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPS 526
Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
CA L+A+ +GKEIH I+ +L T + V ++++D Y + G + ++ K+FD +P K+ +W
Sbjct: 527 CAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITW 586
Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
N +I+ YGM G AI+L M GV + V++I++ ACSH G+V++G + F M+
Sbjct: 587 NVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKP 646
Query: 288 D-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVELG 345
D V+P+ HYAC+VDLLGRAG +++A +L+ +P + + A W +LLGA RI+ N+E+G
Sbjct: 647 DYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIG 706
Query: 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDE 405
AA++L L+P +Y+LL+N+Y+ AG WD+A++VR MK + +K PGCSW++ DE
Sbjct: 707 EIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDE 766
Query: 406 VQDFVVND 413
V FV D
Sbjct: 767 VHKFVAGD 774
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/406 (27%), Positives = 205/406 (50%), Gaps = 24/406 (5%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY K + A + L + +++V+WN ++++ QN L+AL+ +REM + P+ T
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
+++VLPAC+ LR GKE+HA ++ G L+ + F+ +AL DMY C + + VF+
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM 364
Query: 120 FRDEVS-YNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFMGAISACANLAAIKQG 177
F ++ +N +I GYSQ E+L LF M G+ + + G + AC A +
Sbjct: 365 FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK 424
Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
+ IHG +++ L FV N+++D Y+R G+ID+A +IF + +D +WNT+I GY
Sbjct: 425 EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 484
Query: 238 GEVDTAINLFEAMRE---------DGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQ 286
+ A+ L M+ V P ++ + IL +C+ + KGK+
Sbjct: 485 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 544
Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGA 346
+++ + +VD+ + G ++ + K+ +P + + W ++ A ++GN G
Sbjct: 545 KNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN---GQ 600
Query: 347 WAAEHLFML-----KPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
A + L M+ KP + + + + +G DE ++ +MK
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAAC-SHSGMVDEGLRIFYVMK 645
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 157/340 (46%), Gaps = 10/340 (2%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
+Y K +F I+E+N VSWN+++++ AL+ R M N P+S T
Sbjct: 142 LYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFT 201
Query: 61 LTNVLPACAR---GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
L +V+ AC+ L GK++HA +RKG + F+ N L MY K G L + V
Sbjct: 202 LVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLA-SSKVLL 259
Query: 118 ISF--RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
SF RD V++N ++ Q E+L EM L G++ D + + AC++L ++
Sbjct: 260 GSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLR 319
Query: 176 QGKEIHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
GKE+H ++ L + FV ++++D Y ++ ++FD + + WN +I GY
Sbjct: 320 TGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGY 379
Query: 235 GMLGEVDTAINLFEAMRED-GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
A+ LF M E G+ + + ++ AC G + + + +
Sbjct: 380 SQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRD 439
Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
++D+ R G ++ A+++ + + D W ++
Sbjct: 440 RFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMI 478
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 123/260 (47%), Gaps = 6/260 (2%)
Query: 26 WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII 85
W ++ + ++ L +A+ +M + P++ +L A A + GK+IHA +
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 86 RKGLNFD-LFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESL 143
+ G D + + N L ++Y KCG VF+ IS R++VS+N LI +L
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 144 SLFSEMRLLGMKHDVVSFMGAISACANLA---AIKQGKEIHGVTIRKHLHTHLFVANSIL 200
F M ++ + + ++AC+NL + GK++H +RK + F+ N+++
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLV 243
Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
Y + G++ + + +D +WNT++ ++ A+ M +GV D
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303
Query: 261 SYIAILTACSHGGLVEKGKK 280
+ ++L ACSH ++ GK+
Sbjct: 304 TISSVLPACSHLEMLRTGKE 323
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 301 bits (770), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 149/418 (35%), Positives = 262/418 (62%), Gaps = 4/418 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
+YA+ R + +F + ++++SWN+++ + N L+A+ L +EM + P+ +T
Sbjct: 291 LYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLT 350
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN-I 118
L ++ ++ +R + + +RKG D+ + NA+ MYAK G ++ A+ VFN +
Sbjct: 351 LISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL 410
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQG 177
D +S+N +I GY+Q SE++ +++ M G + + +++ + AC+ A++QG
Sbjct: 411 PNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQG 470
Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
++HG ++ L+ +FV S+ D Y + GR++ A +F +P +S WNTLI +G
Sbjct: 471 MKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFH 530
Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
G + A+ LF+ M ++GV D ++++ +L+ACSH GLV++G+ F+ MQ D + P+ H
Sbjct: 531 GHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKH 590
Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
Y CMVD+ GRAG +E A+K IK++ ++PDA+IWGALL ACR++GNV+LG A+EHLF ++
Sbjct: 591 YGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVE 650
Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
P+H GY++LLSNMYA AGKW+ ++R + + +K PG S ++ ++V+ F ++
Sbjct: 651 PEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQ 708
Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 143/275 (52%), Gaps = 9/275 (3%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
+Y A A + F +I +++ +WN M++ + + + ++ + + P+
Sbjct: 95 LYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYR 154
Query: 60 TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
T +VL AC + G +IH ++ G +D+++ +L +Y++ + A+ +F+ +
Sbjct: 155 TFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEM 211
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
RD S+N +I GY Q+ + E+L+L + +R + D V+ + +SAC +G
Sbjct: 212 PVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGV 267
Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
IH +I+ L + LFV+N ++D Y GR+ K+FD + V+D SWN++I Y +
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNE 327
Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
+ AI+LF+ MR + D ++ I++ + S G
Sbjct: 328 QPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 362
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 9/172 (5%)
Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
C NL + K +H + ++ ++ +++ Y G + LA FD + +D +W
Sbjct: 64 CTNL---QSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAW 120
Query: 228 NTLILGYGMLGEVDTAINLFEA-MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
N +I GYG G I F M G+ D ++ ++L AC +++ K + ++
Sbjct: 121 NLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR--TVIDGNKIHCLALK 178
Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL-GACR 337
+ + A ++ L R + +A L +PV D W A++ G C+
Sbjct: 179 FGFMWDVYVA-ASLIHLYSRYKAVGNARILFDEMPVR-DMGSWNAMISGYCQ 228
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 300 bits (769), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 148/417 (35%), Positives = 252/417 (60%), Gaps = 3/417 (0%)
Query: 1 MYAKSSRPAEASYLFHNIA--EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
+YAK R A +F + E+ IVSW A+V+ +AQN ++AL++ +M + P+
Sbjct: 163 LYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDW 222
Query: 59 VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
V L +VL A L+ G+ IHA +++ GL + L +L MYAKCG + A+ +F+
Sbjct: 223 VALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDK 282
Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
+ + + +N +I GY++ E++ +F EM ++ D +S AISACA + +++Q
Sbjct: 283 MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA 342
Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
+ ++ R +F++++++D + + G ++ A +FD +D W+ +I+GYG+
Sbjct: 343 RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLH 402
Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
G AI+L+ AM GV + V+++ +L AC+H G+V +G +F+ M + P + HY
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHY 462
Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
AC++DLLGRAG ++ A ++IK +PV+P +WGALL AC+ + +VELG +AA+ LF + P
Sbjct: 463 ACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDP 522
Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
+ G+Y+ LSN+YA A WD ++VR MK + K+ GCSWV+ R ++ F V D+
Sbjct: 523 SNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDK 579
Score = 155 bits (391), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 170/333 (51%), Gaps = 4/333 (1%)
Query: 11 ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
A +F ++ I WNA++ +++N AL + M + P+S T ++L AC+
Sbjct: 72 ARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSG 131
Query: 71 GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---ISFRDEVSYN 127
L+ G+ +HA++ R G + D+F+ N L +YAKC L A+ VF + R VS+
Sbjct: 132 LSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWT 191
Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
++ Y+Q + E+L +FS+MR + +K D V+ + ++A L +KQG+ IH ++
Sbjct: 192 AIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKM 251
Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
L + S+ Y + G++ A +FD + + WN +I GY G AI++F
Sbjct: 252 GLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMF 311
Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
M V D +S + ++AC+ G +E+ + ++ + + + ++D+ +
Sbjct: 312 HEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKC 371
Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
G +E A +L+ + ++ D +W A++ ++G
Sbjct: 372 GSVEGA-RLVFDRTLDRDVVVWSAMIVGYGLHG 403
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 137/307 (44%), Gaps = 45/307 (14%)
Query: 78 KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEV-SYNILIVGYSQT 136
K+IHAR++ GL F FL L + G + A+ VF+ R ++ +N +I GYS+
Sbjct: 38 KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97
Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
+ ++L ++S M+L + D +F + AC+ L+ ++ G+ +H R +FV
Sbjct: 98 NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157
Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSA--SWNTLILGYGMLGEVDTAINLFEAMREDG 254
N ++ Y + R+ A +F+ LP+ + SW ++ Y GE A+ +F MR+
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217
Query: 255 VGYDPVSYIAILTACS-----------HGGLVEKG------------------------K 279
V D V+ +++L A + H +V+ G K
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277
Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK---NLPVEPDANIWGALLGAC 336
FD+M++ P + + M+ + G +A+ + N V PD + + AC
Sbjct: 278 ILFDKMKS----PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISAC 333
Query: 337 RIYGNVE 343
G++E
Sbjct: 334 AQVGSLE 340
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%)
Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
Q K+IH + L F+ ++ + G I A ++FD LP WN +I GY
Sbjct: 36 QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95
Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
A+ ++ M+ V D ++ +L ACS ++ G+
Sbjct: 96 RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 298 bits (763), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 152/415 (36%), Positives = 247/415 (59%), Gaps = 3/415 (0%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
Y K + A +F ++V + AM++ + N L + +L++ R + PN +TL
Sbjct: 385 YFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITL 444
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
++LP L+ G+E+H II+KG + + A+ DMYAKCG +NLA +F +S
Sbjct: 445 VSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSK 504
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
RD VS+N +I +Q+ + S ++ +F +M + G+ +D VS A+SACANL + GK I
Sbjct: 505 RDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAI 564
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
HG I+ L + ++ ++++D Y + G + A +F + K+ SWN++I G G++
Sbjct: 565 HGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKL 624
Query: 241 DTAINLFEAMRE-DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
++ LF M E G+ D ++++ I+++C H G V++G ++F M D ++P + HYA
Sbjct: 625 KDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYA 684
Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
C+VDL GRAG + +A + +K++P PDA +WG LLGACR++ NVEL A+ L L P
Sbjct: 685 CVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPS 744
Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
+ GYY+L+SN +A A +W+ +KVR LMK RE +K PG SW++ FV D
Sbjct: 745 NSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGD 799
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 183/344 (53%), Gaps = 2/344 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY+K R +AS LF ++ + V+WN M++ + Q+ L ++L EM P+++T
Sbjct: 283 MYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAIT 342
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
+++LP+ ++ L K+IH I+R ++ D+FLT+AL D Y KC +++AQN+F+ +
Sbjct: 343 FSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCN 402
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
D V + +I GY +SL +F + + + + ++ + + L A+K G+E
Sbjct: 403 SVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRE 462
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
+HG I+K + +++D Y + GR++LA +IF+ L +D SWN++I
Sbjct: 463 LHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDN 522
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
AI++F M G+ YD VS A L+AC++ GK M S+ +
Sbjct: 523 PSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSEST 582
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
++D+ + G ++ A+ + K + E + W +++ AC +G ++
Sbjct: 583 LIDMYAKCGNLKAAMNVFKTMK-EKNIVSWNSIIAACGNHGKLK 625
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 134/288 (46%), Gaps = 9/288 (3%)
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL-NLAQNVFNIS 119
L+ +L AC+ + LR GK++HA +I ++ D + + MYA CG + + + +
Sbjct: 38 LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLD 97
Query: 120 FRDEV--SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
R +N +I + + +++L+ + +M G+ DV +F + AC L K
Sbjct: 98 LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGI 157
Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
+ + + FVA+S++ Y G+ID+ +K+FD + KD WN ++ GY
Sbjct: 158 DFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKC 217
Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
G +D+ I F MR D + + V++ +L+ C+ L++ G + + V
Sbjct: 218 GALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIK 277
Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345
++ + + G +DA KL + + D W C I G V+ G
Sbjct: 278 NSLLSMYSKCGRFDDASKLFRMMS-RADTVTWN-----CMISGYVQSG 319
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 138/273 (50%), Gaps = 3/273 (1%)
Query: 1 MYAKSSRPAEASYLFH--NIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58
MYA ++ +F+ ++ +I WN+++++F +N L +AL +M P+
Sbjct: 79 MYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDV 138
Query: 59 VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
T ++ AC + + + G++ + F+ ++L Y + G +++ +F+
Sbjct: 139 STFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDR 198
Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
+ +D V +N+++ GY++ + FS MR+ + + V+F +S CA+ I G
Sbjct: 199 VLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLG 258
Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
++HG+ + + + NS+L Y++ GR D A+K+F + D+ +WN +I GY
Sbjct: 259 VQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQS 318
Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
G ++ ++ F M GV D +++ ++L + S
Sbjct: 319 GLMEESLTFFYEMISSGVLPDAITFSSLLPSVS 351
Score = 38.5 bits (88), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
MYAK A +F + EKNIVSWN+++A + +L L EM + P+ +
Sbjct: 586 MYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQI 645
Query: 60 TLTNVLPAC 68
T ++ +C
Sbjct: 646 TFLEIISSC 654
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 296 bits (759), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/417 (37%), Positives = 245/417 (58%), Gaps = 8/417 (1%)
Query: 2 YAKSSRPAEASYLFHNIA-EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
Y+K + +A LF I N+VSW AM++ F QN + +A+ L EM PN T
Sbjct: 340 YSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFT 399
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
+ +L A + P E+HA++++ + AL D Y K G + A VF+ I
Sbjct: 400 YSVILTALP---VISPS-EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGID 455
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL-AAIKQGK 178
+D V+++ ++ GY+QT + ++ +F E+ G+K + +F ++ CA A++ QGK
Sbjct: 456 DKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGK 515
Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
+ HG I+ L + L V++++L Y + G I+ A ++F KD SWN++I GY G
Sbjct: 516 QFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHG 575
Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
+ A+++F+ M++ V D V++I + AC+H GLVE+G+KYFD M D + PT+ H
Sbjct: 576 QAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHN 635
Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
+CMVDL RAG +E A+K+I+N+P + IW +L ACR++ ELG AAE + +KP
Sbjct: 636 SCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKP 695
Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
+ Y+LLSNMYAE+G W E +KVR+LM R KK PG SW++ +++ F+ DR
Sbjct: 696 EDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDR 752
Score = 125 bits (313), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 168/344 (48%), Gaps = 8/344 (2%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
+Y K +A LF K++V+WN+M++ +A N L+L+AL + M ++ + +
Sbjct: 238 LYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESS 297
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-- 118
+V+ CA LR +++H +++ G FD + AL Y+KC + A +F
Sbjct: 298 FASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIG 357
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
+ VS+ +I G+ Q E++ LFSEM+ G++ + ++ ++A ++
Sbjct: 358 CVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP----S 413
Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
E+H ++ + V ++LD Y + G+++ A K+F + KD +W+ ++ GY G
Sbjct: 414 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 473
Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTAC-SHGGLVEKGKKYFDEMQADSVKPTEMHY 297
E + AI +F + + G+ + ++ +IL C + + +GK++ + +
Sbjct: 474 ETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVS 533
Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
+ ++ + + G +E A ++ K E D W +++ +G
Sbjct: 534 SALLTMYAKKGNIESAEEVFKR-QREKDLVSWNSMISGYAQHGQ 576
Score = 115 bits (287), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 103/435 (23%), Positives = 191/435 (43%), Gaps = 58/435 (13%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
Y K S + +F + E+N+V+W +++ +A+N + + L L M PNS T
Sbjct: 138 YMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTF 197
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
L A G ++H +++ GL+ + ++N+L ++Y KCG + A+ +F+
Sbjct: 198 AAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEV 257
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
+ V++N +I GY+ E+L +F MRL ++ SF I CANL ++ +++
Sbjct: 258 KSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQL 317
Query: 181 H------GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLILG 233
H G +++ T L VA Y++ + A ++F + V + SW +I G
Sbjct: 318 HCSVVKYGFLFDQNIRTALMVA------YSKCTAMLDALRLFKEIGCVGNVVSWTAMISG 371
Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-------HG-------------- 272
+ + A++LF M+ GV + +Y ILTA H
Sbjct: 372 FLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVG 431
Query: 273 ----------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP- 321
G VE+ K F + + + ++ M+ + G E A+K+ L
Sbjct: 432 TALLDAYVKLGKVEEAAKVFSGIDDKDI----VAWSAMLAGYAQTGETEAAIKMFGELTK 487
Query: 322 --VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ----HCGYYILLSNMYAEAGK 375
++P+ + ++L C N +G H F +K + C LL+ MYA+ G
Sbjct: 488 GGIKPNEFTFSSILNVCAA-TNASMGQGKQFHGFAIKSRLDSSLCVSSALLT-MYAKKGN 545
Query: 376 WDEASKVRELMKSRE 390
+ A +V + + ++
Sbjct: 546 IESAEEVFKRQREKD 560
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 160/338 (47%), Gaps = 17/338 (5%)
Query: 5 SSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN---EFPNSVTL 61
SSR A LF ++ S+ +++ F+++ +A +L + IH E S+
Sbjct: 40 SSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLF--LNIHRLGMEMDCSI-F 96
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
++VL A G+++H + I+ G D+ + +L D Y K + VF+ +
Sbjct: 97 SSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKE 156
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
R+ V++ LI GY++ S E L+LF M+ G + + +F A+ A +G ++
Sbjct: 157 RNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQV 216
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
H V ++ L + V+NS+++ Y + G + A +FD VK +WN++I GY G
Sbjct: 217 HTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLD 276
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK-----PTEM 295
A+ +F +MR + V S+ +++ C++ K ++ +++ VK +
Sbjct: 277 LEALGMFYSMRLNYVRLSESSFASVIKLCAN----LKELRFTEQLHCSVVKYGFLFDQNI 332
Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
A MV + M DA++L K + + W A++
Sbjct: 333 RTALMV-AYSKCTAMLDALRLFKEIGCVGNVVSWTAMI 369
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK A +F EK++VSWN+M++ +AQ+ +KAL + +EM + VT
Sbjct: 539 MYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVT 598
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNA-LTDMYAKCGCLNLAQNV 115
V AC + G++ ++R N+ + D+Y++ G L A V
Sbjct: 599 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKV 654
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 296 bits (757), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 159/428 (37%), Positives = 250/428 (58%), Gaps = 11/428 (2%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY+ A +F ++ I WNA+ + L L +M + T
Sbjct: 121 MYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFT 180
Query: 61 LTNVLPACARG----HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
T VL AC + L GKEIHA + R+G + +++ L DMYA+ GC++ A VF
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240
Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFMGAISACANLAA 173
+ R+ VS++ +I Y++ E+L F EM + V+ + + ACA+LAA
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300
Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
++QGK IHG +R+ L + L V ++++ Y R G++++ ++FD + +D SWN+LI
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360
Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKP 292
YG+ G AI +FE M +G PV+++++L ACSH GLVE+GK+ F+ M D +KP
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420
Query: 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352
HYACMVDLLGRA +++A K+++++ EP +WG+LLG+CRI+GNVEL A+ L
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRL 480
Query: 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVN 412
F L+P++ G Y+LL+++YAEA WDE +V++L++ R +K PG W++ R ++ FV
Sbjct: 481 FALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSV 540
Query: 413 DRMKTFTP 420
D F P
Sbjct: 541 DE---FNP 545
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/385 (23%), Positives = 169/385 (43%), Gaps = 51/385 (13%)
Query: 56 PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
P+ T ++ C L +H I+ G + D FL L MY+ G ++ A+ V
Sbjct: 75 PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134
Query: 116 FNISFRDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA----N 170
F+ + + + +N L + E L L+ +M +G++ D ++ + AC
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194
Query: 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230
+ + +GKEIH R+ +H+++ +++D Y R G +D A+ +F +PV++ SW+ +
Sbjct: 195 VNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAM 254
Query: 231 ILGYGMLGEVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGK---KYFDEM 285
I Y G+ A+ F M + P V+ +++L AC+ +E+GK Y
Sbjct: 255 IACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRR 314
Query: 286 QADSVKPTEMHYACMVDLLGRAGLME-------------------------------DAV 314
DS+ P + +V + GR G +E A+
Sbjct: 315 GLDSILPV---ISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAI 371
Query: 315 KLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFM---LKPQHCGYYILLSN 368
++ + + P + ++LGAC G VE G E ++ +KPQ +Y + +
Sbjct: 372 QIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQ-IEHYACMVD 430
Query: 369 MYAEAGKWDEASKVRELMKSREAKK 393
+ A + DEA+K+ + M++ K
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPK 455
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 78/200 (39%), Gaps = 24/200 (12%)
Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
N ++ + G++ A ++ ++ LIL G + A+ + + ++G
Sbjct: 50 NQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSD 109
Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316
DP ++ S G V+ +K FD+ + K T + + L AG E+ + L
Sbjct: 110 QDPFLATKLIGMYSDLGSVDYARKVFDKTR----KRTIYVWNALFRALTLAGHGEEVLGL 165
Query: 317 ---IKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC-----GY----YI 364
+ + VE D + +L AC HL K H GY YI
Sbjct: 166 YWKMNRIGVESDRFTYTYVLKACVA------SECTVNHLMKGKEIHAHLTRRGYSSHVYI 219
Query: 365 L--LSNMYAEAGKWDEASKV 382
+ L +MYA G D AS V
Sbjct: 220 MTTLVDMYARFGCVDYASYV 239
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 295 bits (755), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 154/436 (35%), Positives = 254/436 (58%), Gaps = 37/436 (8%)
Query: 15 FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLPACARGHF 73
F +AE++IV+WN+M++ F Q +L+AL + +M + P+ TL +VL ACA
Sbjct: 235 FEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEK 294
Query: 74 LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC------------------------- 108
L GK+IH+ I+ G + + NAL MY++CG
Sbjct: 295 LCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALL 354
Query: 109 --------LNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
+N A+N+F ++ RD V++ +IVGY Q E+++LF M G + +
Sbjct: 355 DGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSY 414
Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
+ +S ++LA++ GK+IHG ++ + V+N+++ Y ++G I A++ FD +
Sbjct: 415 TLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLI 474
Query: 220 PV-KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
+D+ SW ++I+ G + A+ LFE M +G+ D ++Y+ + +AC+H GLV +G
Sbjct: 475 RCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQG 534
Query: 279 KKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337
++YFD M+ D + PT HYACMVDL GRAGL+++A + I+ +P+EPD WG+LL ACR
Sbjct: 535 RQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACR 594
Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
++ N++LG AAE L +L+P++ G Y L+N+Y+ GKW+EA+K+R+ MK KK G
Sbjct: 595 VHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGF 654
Query: 398 SWVQTRDEVQDFVVND 413
SW++ + +V F V D
Sbjct: 655 SWIEVKHKVHVFGVED 670
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 109/458 (23%), Positives = 191/458 (41%), Gaps = 77/458 (16%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
Y+K F + +++ VSW M+ + KA++++ +M P TL
Sbjct: 90 YSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTL 149
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---- 117
TNVL + A + GK++H+ I++ GL ++ ++N+L +MYAKCG +A+ VF+
Sbjct: 150 TNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVV 209
Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
++ RD V++N +I G++Q +L +FS+M
Sbjct: 210 RDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKM 269
Query: 150 -RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
R + D + +SACANL + GK+IH + V N+++ Y+R G
Sbjct: 270 LRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGG 329
Query: 209 IDLANK---------------------------------IFDCLPVKDSASWNTLILGYG 235
++ A + IF L +D +W +I+GY
Sbjct: 330 VETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYE 389
Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
G AINLF +M G G P SY L A + ++ +VK E+
Sbjct: 390 QHGSYGEAINLFRSMV--GGGQRPNSY--TLAAMLSVASSLASLSHGKQIHGSAVKSGEI 445
Query: 296 HYA----CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
+ ++ + +AG + A + + E D W +++ A +G+ E E
Sbjct: 446 YSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFET 505
Query: 352 LFM--LKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
+ M L+P H Y + S AG ++ + ++MK
Sbjct: 506 MLMEGLRPDHITYVGVFSAC-THAGLVNQGRQYFDMMK 542
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 129/277 (46%), Gaps = 48/277 (17%)
Query: 56 PNSVTLTNVLPAC----------ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK 105
P ++L+ +L C + G F + +H R+I+ GL F ++L N L ++Y+K
Sbjct: 4 PVPLSLSTLLELCTNLLQKSVNKSNGRF--TAQLVHCRVIKSGLMFSVYLMNNLMNVYSK 61
Query: 106 CGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM--------------- 149
G A+ +F+ + R S+N ++ YS+ D + F ++
Sbjct: 62 TGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGY 121
Query: 150 RLLGMKHDVVSFMG----------------AISACANLAAIKQGKEIHGVTIRKHLHTHL 193
+ +G H + MG +++ A ++ GK++H ++ L ++
Sbjct: 122 KNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNV 181
Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253
V+NS+L+ Y + G +A +FD + V+D +SWN +I + +G++D A+ FE M E
Sbjct: 182 SVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAE- 240
Query: 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290
D V++ ++++ + G + F +M DS+
Sbjct: 241 ---RDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSL 274
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 78/157 (49%), Gaps = 7/157 (4%)
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
+H I+ L +++ N++++ Y+++G A K+FD +P++ + SWNT++ Y G+
Sbjct: 36 VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
+D+ F+ + + D VS+ ++ + G K + +M + ++PT+
Sbjct: 96 MDSTCEFFDQLPQ----RDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTN 151
Query: 300 MVDLLGRAGLMEDAVKL---IKNLPVEPDANIWGALL 333
++ + ME K+ I L + + ++ +LL
Sbjct: 152 VLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLL 188
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 294 bits (752), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 158/423 (37%), Positives = 252/423 (59%), Gaps = 16/423 (3%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
YA A LF I K++VSWNAM++ +A+ +AL+L ++M N P+ T+
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
V+ ACA+ + G+++H I G +L + NAL D+Y+KCG L A +F + +
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
+D +S+N LI GY+ + E+L LF EM G + V+ + + ACA+L AI G+ I
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 389
Query: 181 H--------GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
H GVT L T S++D Y + G I+ A+++F+ + K +SWN +I
Sbjct: 390 HVYIDKRLKGVTNASSLRT------SLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443
Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVK 291
G+ M G D + +LF MR+ G+ D ++++ +L+ACSH G+++ G+ F M D +
Sbjct: 444 GFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMT 503
Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
P HY CM+DLLG +GL ++A ++I + +EPD IW +LL AC+++GNVELG AE+
Sbjct: 504 PKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAEN 563
Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
L ++P++ G Y+LLSN+YA AG+W+E +K R L+ + KK PGCS ++ V +F++
Sbjct: 564 LIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFII 623
Query: 412 NDR 414
D+
Sbjct: 624 GDK 626
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 178/365 (48%), Gaps = 37/365 (10%)
Query: 14 LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
+F I E N++ WN M A + + AL+L M PNS T VL +CA+
Sbjct: 90 VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKA 149
Query: 74 LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
+ G++IH +++ G + DL++ +L MY + G L A VF+
Sbjct: 150 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKG 209
Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
I +D VS+N +I GY++T + E+L LF +M ++ D +
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269
Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221
+ +SACA +I+ G+++H ++L + N+++D Y++ G ++ A +F+ LP
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329
Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK-- 279
KD SWNTLI GY + A+ LF+ M G + V+ ++IL AC+H G ++ G+
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 389
Query: 280 -KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
Y D+ + + + ++D+ + G +E A ++ ++ + + W A++ +
Sbjct: 390 HVYIDKRLKGVTNASSLRTS-LIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAM 447
Query: 339 YGNVE 343
+G +
Sbjct: 448 HGRAD 452
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 100/183 (54%), Gaps = 3/183 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
+Y+K A LF + K+++SWN ++ + L +AL L +EM E PN VT
Sbjct: 310 LYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 369
Query: 61 LTNVLPACARGHFLRPGKEIHARIIR--KGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
+ ++LPACA + G+ IH I + KG+ L +L DMYAKCG + A VFN
Sbjct: 370 MLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNS 429
Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
I + S+N +I G++ S LFS MR +G++ D ++F+G +SAC++ + G
Sbjct: 430 ILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLG 489
Query: 178 KEI 180
+ I
Sbjct: 490 RHI 492
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 132/291 (45%), Gaps = 36/291 (12%)
Query: 80 IHARIIRKGLNFDLFLTNALTD---MYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQ 135
IHA++I+ GL+ + + L + + L A +VF I + + +N + G++
Sbjct: 52 IHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHAL 111
Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
+SD +L L+ M LG+ + +F + +CA A K+G++IHG ++ L+V
Sbjct: 112 SSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYV 171
Query: 196 ANSILDFYTRSGR-------------------------------IDLANKIFDCLPVKDS 224
S++ Y ++GR I+ A K+FD +PVKD
Sbjct: 172 HTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDV 231
Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
SWN +I GY G A+ LF+ M + V D + + +++AC+ G +E G++
Sbjct: 232 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLW 291
Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
+ ++DL + G +E A L + LP + D W L+G
Sbjct: 292 IDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DVISWNTLIGG 341
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 293 bits (751), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 145/414 (35%), Positives = 254/414 (61%), Gaps = 2/414 (0%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
Y+K A +F + E+++VSWN M+ + +NR+E +AL + EM + T+
Sbjct: 106 YSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTI 165
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
++VL AC K++H ++ ++ +L++ AL D+YAKCG + A VF ++
Sbjct: 166 SSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQD 225
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
+ V+++ ++ GY Q + E+L L+ + + ++ + + I AC+NLAA+ +GK++
Sbjct: 226 KSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQM 285
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
H V + +++FVA+S +D Y + G + + IF + K+ WNT+I G+
Sbjct: 286 HAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARP 345
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
+ LFE M++DG+ + V++ ++L+ C H GLVE+G+++F M+ + P +HY+C
Sbjct: 346 KEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSC 405
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
MVD+LGRAGL+ +A +LIK++P +P A+IWG+LL +CR+Y N+EL AAE LF L+P++
Sbjct: 406 MVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPEN 465
Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
G ++LLSN+YA +W+E +K R+L++ + KK G SW+ +D+V F V +
Sbjct: 466 AGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGE 519
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 140/284 (49%), Gaps = 2/284 (0%)
Query: 53 NEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
NEF N + +L CAR + K H +IIR L D+ L N L + Y+KCG + LA
Sbjct: 56 NEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELA 115
Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171
+ VF+ + R VS+N +I Y++ SE+L +F EMR G K + +SAC
Sbjct: 116 RQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVN 175
Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
+ K++H ++++ + +L+V ++LD Y + G I A ++F+ + K S +W++++
Sbjct: 176 CDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMV 235
Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
GY + A+ L+ + + + + +++ ACS+ + +GK+ +
Sbjct: 236 AGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFG 295
Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
+ VD+ + G + ++ + + E + +W ++
Sbjct: 296 SNVFVASSAVDMYAKCGSLRESYIIFSEVQ-EKNLELWNTIISG 338
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 128/234 (54%), Gaps = 3/234 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
+YAK +A +F ++ +K+ V+W++MVA + QN+ +AL L R + N T
Sbjct: 206 LYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFT 265
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
L++V+ AC+ L GK++HA I + G ++F+ ++ DMYAKCG L + +F+ +
Sbjct: 266 LSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ 325
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
++ +N +I G+++ + E + LF +M+ GM + V+F +S C + +++G+
Sbjct: 326 EKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRR 385
Query: 180 IHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
+ + L ++ + ++D R+G + A ++ +P +AS W +L+
Sbjct: 386 FFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLL 439
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 291 bits (744), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 148/415 (35%), Positives = 249/415 (60%), Gaps = 5/415 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVS---WNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
+++ R A +F ++ + ++++ W AM +++N AL + +M P
Sbjct: 176 LFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPG 235
Query: 58 SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
+ +++ L AC LR G+ IHA+I+++ D + N L +Y + G + A+ VF+
Sbjct: 236 NFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFD 295
Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
+S R+ V++N LI S+ E +LF +M+ + + + AC+ +AA+
Sbjct: 296 GMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLT 355
Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
GKEIH ++ + + NS++D Y + G ++ + ++FD + KD ASWN ++ Y +
Sbjct: 356 GKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAI 415
Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
G ++ INLFE M E GV D ++++A+L+ CS GL E G F+ M+ + V P
Sbjct: 416 NGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALE 475
Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
HYAC+VD+LGRAG +++AVK+I+ +P +P A+IWG+LL +CR++GNV +G AA+ LF+L
Sbjct: 476 HYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVL 535
Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFV 410
+P + G Y+++SN+YA+A WD K+RE+MK R KK GCSWVQ +D++Q FV
Sbjct: 536 EPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFV 590
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 77/182 (42%), Gaps = 9/182 (4%)
Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
++ + AC + ++ G +I + + L + + + ++ ++ R+DLA KIFD
Sbjct: 133 AYTDLLHACISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFD- 191
Query: 219 LPVKDSA-----SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
V DS+ W + +GY G A+ ++ M + S L AC
Sbjct: 192 -DVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLK 250
Query: 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
+ G+ ++ K ++ Y ++ L +GL +DA K+ + E + W +L+
Sbjct: 251 DLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMS-ERNVVTWNSLI 309
Query: 334 GA 335
Sbjct: 310 SV 311
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 290 bits (743), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 151/432 (34%), Positives = 250/432 (57%), Gaps = 37/432 (8%)
Query: 20 EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79
E NIVSWN +++ F ++ +A+ + +++ P+ VT+++VLP+ L G+
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRL 273
Query: 80 IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-------------IS------- 119
IH +I++GL D + +A+ DMY K G + ++FN I+
Sbjct: 274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333
Query: 120 ----------FRDE------VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMG 163
F+++ VS+ +I G +Q E+L LF EM++ G+K + V+
Sbjct: 334 VDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPS 393
Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223
+ AC N+AA+ G+ HG +R HL ++ V ++++D Y + GRI+L+ +F+ +P K+
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN 453
Query: 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283
WN+L+ G+ M G+ +++FE++ + D +S+ ++L+AC GL ++G KYF
Sbjct: 454 LVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFK 513
Query: 284 EMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNV 342
M + +KP HY+CMV+LLGRAG +++A LIK +P EPD+ +WGALL +CR+ NV
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573
Query: 343 ELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQT 402
+L AAE LF L+P++ G Y+LLSN+YA G W E +R M+S KKNPGCSW+Q
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQV 633
Query: 403 RDEVQDFVVNDR 414
++ V + D+
Sbjct: 634 KNRVYTLLAGDK 645
Score = 115 bits (287), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 150/332 (45%), Gaps = 36/332 (10%)
Query: 10 EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
+A + +I + I S+++++ + +L +++ + M H P+S L N+ CA
Sbjct: 68 DADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCA 127
Query: 70 RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
+ GK+IH GL+ D F+ ++ MY +CG + A+ VF+ +S +D V+ +
Sbjct: 128 ELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSA 187
Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA--------------------- 167
L+ Y++ E + + SEM G++ ++VS+ G +S
Sbjct: 188 LLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLG 247
Query: 168 -CANLAAIKQ-------------GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
C + + G+ IHG I++ L V ++++D Y +SG +
Sbjct: 248 FCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGII 307
Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
+F+ + ++ N I G G VD A+ +FE +E + + VS+ +I+ C+ G
Sbjct: 308 SLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNG 367
Query: 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
+ + F EMQ VKP + M+ G
Sbjct: 368 KDIEALELFREMQVAGVKPNHVTIPSMLPACG 399
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 3/234 (1%)
Query: 79 EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEV--SYNILIVGYSQT 136
+ HARI++ G D +++ L Y+ C N A V S D S++ LI ++
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQ-SIPDPTIYSFSSLIYALTKA 94
Query: 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
++S+ +FS M G+ D CA L+A K GK+IH V+ L FV
Sbjct: 95 KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154
Query: 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256
S+ Y R GR+ A K+FD + KD + + L+ Y G ++ + + M G+
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214
Query: 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310
+ VS+ IL+ + G ++ F ++ P ++ + ++ +G + ++
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEML 268
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 37/70 (52%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK R + +F+ + KN+V WN+++ F+ + + + + + P+ ++
Sbjct: 432 MYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFIS 491
Query: 61 LTNVLPACAR 70
T++L AC +
Sbjct: 492 FTSLLSACGQ 501
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 288 bits (736), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 152/411 (36%), Positives = 242/411 (58%), Gaps = 2/411 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK A LF + E+N+VSWN+M+ + QN +A+ + ++M P V+
Sbjct: 280 MYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVS 339
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
+ L ACA L G+ IH + GL+ ++ + N+L MY KC ++ A ++F +
Sbjct: 340 VMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQ 399
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
R VS+N +I+G++Q ++L+ FS+MR +K D +++ I+A A L+ K
Sbjct: 400 SRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKW 459
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
IHGV +R L ++FV +++D Y + G I +A IFD + + +WN +I GYG G
Sbjct: 460 IHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGF 519
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
A+ LFE M++ + + V+++++++ACSH GLVE G K F M+ + S++ + HY
Sbjct: 520 GKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYG 579
Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
MVDLLGRAG + +A I +PV+P N++GA+LGAC+I+ NV AAE LF L P
Sbjct: 580 AMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPD 639
Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
GY++LL+N+Y A W++ +VR M + +K PGCS V+ ++EV F
Sbjct: 640 DGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSF 690
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 186/351 (52%), Gaps = 5/351 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK + EA +F + E+++VSWN +VA ++QN + AL++V+ M N P+ +T
Sbjct: 179 MYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFIT 238
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
+ +VLPA + + GKEIH +R G + + ++ AL DMYAKCG L A+ +F+ +
Sbjct: 239 IVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGML 298
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
R+ VS+N +I Y Q + E++ +F +M G+K VS MGA+ ACA+L +++G+
Sbjct: 299 ERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRF 358
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
IH +++ L ++ V NS++ Y + +D A +F L + SWN +ILG+ G
Sbjct: 359 IHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGR 418
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
A+N F MR V D +Y++++TA + + K + +
Sbjct: 419 PIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTA 478
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350
+VD+ + G + A +LI ++ E W A++ YG G A E
Sbjct: 479 LVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDG---YGTHGFGKAALE 525
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 144/280 (51%), Gaps = 1/280 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
++ + EA+ +F I K V ++ M+ FA+ KALQ M + P
Sbjct: 78 LFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYN 137
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
T +L C LR GKEIH +++ G + DLF L +MYAKC +N A+ VF+ +
Sbjct: 138 FTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMP 197
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
RD VS+N ++ GYSQ +L + M +K ++ + + A + L I GKE
Sbjct: 198 ERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKE 257
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
IHG +R + + ++ +++D Y + G ++ A ++FD + ++ SWN++I Y
Sbjct: 258 IHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNEN 317
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
A+ +F+ M ++GV VS + L AC+ G +E+G+
Sbjct: 318 PKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 129/263 (49%), Gaps = 2/263 (0%)
Query: 74 LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
L+ ++I + + GL + F L ++ + G ++ A VF I + V Y+ ++ G
Sbjct: 50 LKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKG 109
Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
+++ SD ++L F MR ++ V +F + C + A ++ GKEIHG+ ++
Sbjct: 110 FAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLD 169
Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
LF + + Y + +++ A K+FD +P +D SWNT++ GY G A+ + ++M E
Sbjct: 170 LFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCE 229
Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
+ + ++ +++L A S L+ GK+ +VD+ + G +E
Sbjct: 230 ENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLET 289
Query: 313 AVKLIKNLPVEPDANIWGALLGA 335
A +L + +E + W +++ A
Sbjct: 290 ARQLFDGM-LERNVVSWNSMIDA 311
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 286 bits (733), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 147/417 (35%), Positives = 237/417 (56%), Gaps = 4/417 (0%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
Y K +A + + EKN+VSW AM++ ++Q +AL + EM + PN T
Sbjct: 97 YGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTF 156
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
VL +C R L GK+IH I++ + +F+ ++L DMYAK G + A+ +F +
Sbjct: 157 ATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPE 216
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
RD VS +I GY+Q E+L +F + GM + V++ ++A + LA + GK+
Sbjct: 217 RDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQA 276
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
H +R+ L + + NS++D Y++ G + A ++FD +P + + SWN +++GY G
Sbjct: 277 HCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLG 336
Query: 241 DTAINLFEAMR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS--VKPTEMHY 297
+ LF MR E V D V+ +A+L+ CSHG + + G FD M A KP HY
Sbjct: 337 REVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHY 396
Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
C+VD+LGRAG +++A + IK +P +P A + G+LLGACR++ +V++G L ++P
Sbjct: 397 GCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEP 456
Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
++ G Y++LSN+YA AG+W + + VR +M + K PG SW+Q + F NDR
Sbjct: 457 ENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDR 513
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 148/271 (54%), Gaps = 2/271 (0%)
Query: 64 VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
+L AC LR G+ +HA +I+ +L L Y KC CL A+ V + + ++
Sbjct: 58 LLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 117
Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG 182
VS+ +I YSQT SE+L++F+EM K + +F +++C + + GK+IHG
Sbjct: 118 VVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHG 177
Query: 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242
+ ++ + +H+FV +S+LD Y ++G+I A +IF+CLP +D S +I GY LG +
Sbjct: 178 LIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEE 237
Query: 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
A+ +F + +G+ + V+Y ++LTA S L++ GK+ + + + ++D
Sbjct: 238 ALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLID 297
Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
+ + G + A +L N+P E A W A+L
Sbjct: 298 MYSKCGNLSYARRLFDNMP-ERTAISWNAML 327
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 4/237 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK+ + EA +F + E+++VS A++A +AQ L+ +AL++ + PN VT
Sbjct: 197 MYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVT 256
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
++L A + L GK+ H ++R+ L F L N+L DMY+KCG L+ A+ +F N+
Sbjct: 257 YASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMP 316
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMR-LLGMKHDVVSFMGAISACANLAAIKQGK 178
R +S+N ++VGYS+ E L LF MR +K D V+ + +S C++ G
Sbjct: 317 ERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGL 376
Query: 179 EIHGVTIRKHLHTHLFVAN--SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
I + T + I+D R+GRID A + +P K +A +LG
Sbjct: 377 NIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLG 433
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 84/175 (48%), Gaps = 2/175 (1%)
Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207
EM +LG + + ++AC + A++ G+ +H I+ ++ +L FY +
Sbjct: 42 EMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCD 101
Query: 208 RIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF-EAMREDGVGYDPVSYIAIL 266
++ A K+ D +P K+ SW +I Y G A+ +F E MR DG + ++ +L
Sbjct: 102 CLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKP-NEFTFATVL 160
Query: 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
T+C + GK+ + + + ++D+ +AG +++A ++ + LP
Sbjct: 161 TSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLP 215
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 286 bits (732), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/415 (37%), Positives = 242/415 (58%), Gaps = 3/415 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY + EA LF + K+IVSW M++ + N L KA+ R M + P+ +T
Sbjct: 341 MYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEIT 400
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
+ VL ACA L G E+H I+ L + + N L +MY+KC C++ A ++F NI
Sbjct: 401 VAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIP 460
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
++ +S+ +I G + C E+L +M++ ++ + ++ A++ACA + A+ GKE
Sbjct: 461 RKNVISWTSIIAGLRLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKE 519
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
IH +R + F+ N++LD Y R GR++ A F+ KD SWN L+ GY G+
Sbjct: 520 IHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLTGYSERGQ 578
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
+ LF+ M + V D +++I++L CS +V +G YF +M+ V P HYAC
Sbjct: 579 GSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYAC 638
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
+VDLLGRAG +++A K I+ +PV PD +WGALL ACRI+ ++LG +A+H+F L +
Sbjct: 639 VVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKS 698
Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
GYYILL N+YA+ GKW E +KVR +MK + GCSWV+ + +V F+ +D+
Sbjct: 699 VGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDK 753
Score = 158 bits (400), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 171/344 (49%), Gaps = 11/344 (3%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLV-REMPIHNEFPNSV 59
M+ + +A Y+F ++E+N+ SWN +V +A+ +A+ L R + + P+
Sbjct: 138 MFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVY 197
Query: 60 TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
T VL C L GKE+H ++R G D+ + NAL MY KCG + A+ +F+ +
Sbjct: 198 TFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRM 257
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
RD +S+N +I GY + C E L LF MR L + D+++ ISAC L + G+
Sbjct: 258 PRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGR 317
Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
+IH I + V NS+ Y +G A K+F + KD SW T+I GY
Sbjct: 318 DIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNF 377
Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
D AI+ + M +D V D ++ A+L+AC+ G ++ G E+ ++K + Y
Sbjct: 378 LPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGV----ELHKLAIKARLISYV 433
Query: 299 C----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
++++ + ++ A+ + N+P + W +++ R+
Sbjct: 434 IVANNLINMYSKCKCIDKALDIFHNIP-RKNVISWTSIIAGLRL 476
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 121/298 (40%), Gaps = 42/298 (14%)
Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
G E++ L + M+ L + D F+ + C A ++G +++ + +
Sbjct: 68 GLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSL 127
Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
+ + N+ L + R G + A +F + ++ SWN L+ GY G D A+ L+ M
Sbjct: 128 GVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRML 187
Query: 252 -EDGVGYDPVSYIAILTACSHGGLVEKGK-------KYFDEMQADSVKP-TEMHYAC--- 299
GV D ++ +L C + +GK +Y E+ D V M+ C
Sbjct: 188 WVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDV 247
Query: 300 -----MVDLLGRA---------------GLMEDAVKL---IKNLPVEPDANIWGALLGAC 336
+ D + R G+ + ++L ++ L V+PD +++ AC
Sbjct: 248 KSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISAC 307
Query: 337 RIYGNVELG----AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390
+ G+ LG A+ F + C L+ MY AG W EA K+ M+ ++
Sbjct: 308 ELLGDRRLGRDIHAYVITTGFAVDISVCNS---LTQMYLNAGSWREAEKLFSRMERKD 362
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/417 (35%), Positives = 239/417 (57%), Gaps = 7/417 (1%)
Query: 2 YAKSSRPAEASYLF--HNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
Y+++ EA LF HN ++V+WNAM+A + Q+ K L+L M E +
Sbjct: 462 YSRNRCMKEAEILFERHNF---DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDF 518
Query: 60 TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
TL V C + GK++HA I+ G + DL++++ + DMY KCG ++ AQ F+ I
Sbjct: 519 TLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSI 578
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
D+V++ +I G + + + +FS+MRL+G+ D + A + L A++QG+
Sbjct: 579 PVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGR 638
Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
+IH ++ + FV S++D Y + G ID A +F + + + +WN +++G G
Sbjct: 639 QIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHG 698
Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
E + LF+ M+ G+ D V++I +L+ACSH GLV + K+ M D +KP HY
Sbjct: 699 EGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHY 758
Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
+C+ D LGRAGL++ A LI+++ +E A+++ LL ACR+ G+ E G A L L+P
Sbjct: 759 SCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEP 818
Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
Y+LLSNMYA A KWDE R +MK + KK+PG SW++ ++++ FVV+DR
Sbjct: 819 LDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDR 875
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 170/334 (50%), Gaps = 2/334 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY K + A +F N++E++++SWN+++A AQN LE++A+ L ++ P+ T
Sbjct: 359 MYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYT 418
Query: 61 LTNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119
+T+VL A + L K++H I+ D F++ AL D Y++ C+ A+ +F
Sbjct: 419 MTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERH 478
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
D V++N ++ GY+Q+ D ++L LF+ M G + D + C L AI QGK+
Sbjct: 479 NFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQ 538
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
+H I+ L+V++ ILD Y + G + A FD +PV D +W T+I G GE
Sbjct: 539 VHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGE 598
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
+ A ++F MR GV D + + A S +E+G++ +
Sbjct: 599 EERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTS 658
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
+VD+ + G ++DA L K + + + W A+L
Sbjct: 659 LVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAML 691
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 130/282 (46%), Gaps = 4/282 (1%)
Query: 57 NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
+ VT +L + L G+++H ++ GL+ L ++N+L +MY K A+ VF
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373
Query: 117 -NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL-AAI 174
N+S RD +S+N +I G +Q E++ LF ++ G+K D + + A ++L +
Sbjct: 374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGL 433
Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
K++H I+ + + FV+ +++D Y+R+ + A +F+ D +WN ++ GY
Sbjct: 434 SLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGY 492
Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
+ + LF M + G D + + C + +GK+
Sbjct: 493 TQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDL 552
Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
+ ++D+ + G M A ++PV PD W ++ C
Sbjct: 553 WVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGC 593
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 74 LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
L GK HARI+ N + FL N L MY+KCG L A+ VF+ + RD VS+N ++
Sbjct: 55 LMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114
Query: 133 YSQTSDC-----SESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
Y+Q+S+C ++ LF +R + ++ + C + + + HG +
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKI 174
Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
L FVA ++++ Y + G++ +F+ +P +D WN ++ Y +G + AI+L
Sbjct: 175 GLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLS 234
Query: 248 EAMREDGVGYDPVS 261
A G+ + ++
Sbjct: 235 SAFHSSGLNPNEIT 248
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 115/270 (42%), Gaps = 31/270 (11%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
+Y K + E LF + +++V WN M+ + + + +A+ L PN +T
Sbjct: 189 IYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEIT 248
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
L + ARI G + D + + N A +V I F
Sbjct: 249 L-----------------RLLARI--SGDDSDAGQVKSFANG-------NDASSVSEIIF 282
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
R N + Y + S L F++M ++ D V+F+ ++ + ++ G+++
Sbjct: 283 R-----NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQV 337
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
H + ++ L L V+NS+++ Y + + A +FD + +D SWN++I G G
Sbjct: 338 HCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLE 397
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACS 270
A+ LF + G+ D + ++L A S
Sbjct: 398 VEAVCLFMQLLRCGLKPDQYTMTSVLKAAS 427
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 73/362 (20%), Positives = 149/362 (41%), Gaps = 43/362 (11%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLEL-----KALQLVREMPIHNEF 55
MY+K A +F + ++++VSWN+++A +AQ+ + +A L R + +
Sbjct: 83 MYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVY 142
Query: 56 PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
+ +TL+ +L C ++ + H + GL+ D F+ AL ++Y K G + + +
Sbjct: 143 TSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVL 202
Query: 116 F-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM------GAISAC 168
F + +RD V +N+++ Y + E++ L S G+ + ++ G S
Sbjct: 203 FEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDA 262
Query: 169 ANLAAIKQGKEIHGVT--------IRKHLHTHLFVA--NSILDFYTRSGRIDLANKIF-- 216
+ + G + V+ + ++LH+ + A D D I
Sbjct: 263 GQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILML 322
Query: 217 ------DCLPVKDSASWNTLILGYG-MLGEVDTAINLFEAMREDGVG---------YDPV 260
D L + L LG ML ++ IN++ +R+ G D +
Sbjct: 323 ATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLI 382
Query: 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
S+ +++ + GL + F ++ +KP + M +L A + + + L K +
Sbjct: 383 SWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQY---TMTSVLKAASSLPEGLSLSKQV 439
Query: 321 PV 322
V
Sbjct: 440 HV 441
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK +A LF I NI +WNAM+ AQ+ + LQL ++M P+ VT
Sbjct: 662 MYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVT 721
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRK--GLNFDLFLTNALTDMYAKCGCLNLAQNV 115
VL AC+ + + H R + G+ ++ + L D + G + A+N+
Sbjct: 722 FIGVLSACSHSGLVSEAYK-HMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENL 777
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/416 (35%), Positives = 233/416 (56%), Gaps = 2/416 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK + A + A K++VSW M+A + Q + KAL R+M + V
Sbjct: 534 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 593
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
LTN + ACA L+ G++IHA+ G + DL NAL +Y++CG + + F
Sbjct: 594 LTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTE 653
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
D +++N L+ G+ Q+ + E+L +F M G+ ++ +F A+ A + A +KQGK+
Sbjct: 654 AGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ 713
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
+H V + + V N+++ Y + G I A K F + K+ SWN +I Y G
Sbjct: 714 VHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGF 773
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
A++ F+ M V + V+ + +L+ACSH GLV+KG YF+ M ++ + P HY
Sbjct: 774 GSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYV 833
Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
C+VD+L RAGL+ A + I+ +P++PDA +W LL AC ++ N+E+G +AA HL L+P+
Sbjct: 834 CVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPE 893
Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
Y+LLSN+YA + KWD R+ MK + KK PG SW++ ++ + F V D+
Sbjct: 894 DSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQ 949
Score = 148 bits (374), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 105/403 (26%), Positives = 193/403 (47%), Gaps = 37/403 (9%)
Query: 14 LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
+F + E+ I +WN M+ A L + L M N PN T + VL AC G
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 201
Query: 74 -LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
++IHARI+ +GL + N L D+Y++ G ++LA+ VF+ + +D S+ +I
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 261
Query: 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT 191
G S+ +E++ LF +M +LG+ +F +SAC + +++ G+++HG+ ++ +
Sbjct: 262 GLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSS 321
Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
+V N+++ Y G + A IF + +D+ ++NTLI G G + A+ LF+ M
Sbjct: 322 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 381
Query: 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFD---------------------------E 284
DG+ D + +++ ACS G + +G++ E
Sbjct: 382 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 441
Query: 285 MQADSVKPTEMHYACMVDLLGRA-GLMED---AVKLIKNLPVE---PDANIWGALLGACR 337
D TE+ + +++ A GL++D + ++ + + +E P+ + ++L C
Sbjct: 442 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 501
Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYI-LLSNMYAEAGKWDEA 379
G++ELG + Q Y +L +MYA+ GK D A
Sbjct: 502 RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTA 544
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 163/314 (51%), Gaps = 1/314 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
+Y+++ A +F + K+ SW AM++ ++N E +A++L +M + P
Sbjct: 231 LYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYA 290
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
++VL AC + L G+++H +++ G + D ++ NAL +Y G L A+++F N+S
Sbjct: 291 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS 350
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
RD V+YN LI G SQ +++ LF M L G++ D + + AC+ + +G++
Sbjct: 351 QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQ 410
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
+H T + ++ + ++L+ Y + I+ A F V++ WN +++ YG+L +
Sbjct: 411 LHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDD 470
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
+ + +F M+ + + + +Y +IL C G +E G++ ++ + + +
Sbjct: 471 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSV 530
Query: 300 MVDLLGRAGLMEDA 313
++D+ + G ++ A
Sbjct: 531 LIDMYAKLGKLDTA 544
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 161/335 (48%), Gaps = 4/335 (1%)
Query: 11 ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
A ++F N+++++ V++N ++ +Q KA++L + M + P+S TL +++ AC+
Sbjct: 342 AEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA 401
Query: 71 GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNIL 129
L G+++HA + G + + AL ++YAKC + A + F + V +N++
Sbjct: 402 DGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVM 461
Query: 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
+V Y D S +F +M++ + + ++ + C L ++ G++IH I+ +
Sbjct: 462 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNF 521
Query: 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249
+ +V + ++D Y + G++D A I KD SW T+I GY D A+ F
Sbjct: 522 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 581
Query: 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309
M + G+ D V ++AC+ +++G++ + +V L R G
Sbjct: 582 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGK 641
Query: 310 MEDAVKLIKNLPVEPDANI-WGALLGACRIYGNVE 343
+E++ + E NI W AL+ + GN E
Sbjct: 642 IEESYLAFEQ--TEAGDNIAWNALVSGFQQSGNNE 674
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 149/327 (45%), Gaps = 37/327 (11%)
Query: 56 PNSVTLTNVLPACARGH-FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
PN TL +L C + + L G+++H++I++ GL+ + L+ L D Y G L A
Sbjct: 82 PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFK 141
Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC-ANLA 172
VF+ + R ++N +I + + E LF M + + +F G + AC
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 201
Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
A ++IH + + L V N ++D Y+R+G +DLA ++FD L +KD +SW +I
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 261
Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK------------ 280
G AI LF M G+ P ++ ++L+AC +E G++
Sbjct: 262 GLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSS 321
Query: 281 -----------YF--------DEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL- 320
YF + + ++ + + Y +++ L + G E A++L K +
Sbjct: 322 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 381
Query: 321 --PVEPDANIWGALLGACRIYGNVELG 345
+EPD+N +L+ AC G + G
Sbjct: 382 LDGLEPDSNTLASLVVACSADGTLFRG 408
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 150/415 (36%), Positives = 238/415 (57%), Gaps = 3/415 (0%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMP-IHNEFPNSVT 60
YA+ EA LF + EK+ SW AMV + + +AL L M + N PN T
Sbjct: 161 YAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFT 220
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
++ + A A +R GKEIH I+R GL+ D L ++L DMY KCGC++ A+N+F+ I
Sbjct: 221 VSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIV 280
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
+D VS+ +I Y ++S E SLFSE+ + + +F G ++ACA+L + GK+
Sbjct: 281 EKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQ 340
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
+HG R + F ++S++D YT+ G I+ A + D P D SW +LI G G+
Sbjct: 341 VHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQ 400
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYA 298
D A+ F+ + + G D V+++ +L+AC+H GLVEKG ++F + + + T HY
Sbjct: 401 PDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYT 460
Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
C+VDLL R+G E +I +P++P +W ++LG C YGN++L AA+ LF ++P+
Sbjct: 461 CLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPE 520
Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
+ Y+ ++N+YA AGKW+E K+R+ M+ K PG SW + + + F+ D
Sbjct: 521 NPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAAD 575
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 137/293 (46%), Gaps = 12/293 (4%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY K EA +F I EK++VSW +M+ + ++ + L E+ E PN T
Sbjct: 262 MYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYT 321
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
VL ACA GK++H + R G + F +++L DMY KCG + A++V +
Sbjct: 322 FAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCP 381
Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
+ D VS+ LI G +Q E+L F + G K D V+F+ +SAC + +++G E
Sbjct: 382 KPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLE 441
Query: 180 IHGVTIRKHLHTHLFVANSIL-DFYTRSGRIDLANKIFDCLPVKDSAS-WNTLILGYGML 237
KH +H + L D RSGR + + +P+K S W +++ G
Sbjct: 442 FFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTY 501
Query: 238 GEVD----TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
G +D A LF+ E +PV+Y+ + + G E+ K MQ
Sbjct: 502 GNIDLAEEAAQELFKIEPE-----NPVTYVTMANIYAAAGKWEEEGKMRKRMQ 549
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 17/137 (12%)
Query: 139 CSESLSLFSEMRLLGM--KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196
C + L L ++LLG K ++ I C+ A+++GK++H +H+ T FV
Sbjct: 65 CGQKL-LREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVH-----EHIRTSGFVP 118
Query: 197 -----NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251
N +L Y + G + A K+FD +P +D SWN ++ GY +G ++ A LF+ M
Sbjct: 119 GIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMT 178
Query: 252 EDGVGYDPVSYIAILTA 268
E D S+ A++T
Sbjct: 179 EK----DSYSWTAMVTG 191
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 283 bits (723), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 150/423 (35%), Positives = 246/423 (58%), Gaps = 14/423 (3%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY K+ +A LF I E+N+ +WNA ++N + +A++ E + PNS+T
Sbjct: 152 MYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSIT 211
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
L AC+ L G ++H ++R G + D+ + N L D Y KC + ++ +F +
Sbjct: 212 FCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMG 271
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS---FM--GAISACANLAAI 174
++ VS+ L+ Y Q + ++ L+ L + D+V FM +SACA +A +
Sbjct: 272 TKNAVSWCSLVAAYVQNHEDEKASVLY-----LRSRKDIVETSDFMISSVLSACAGMAGL 326
Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
+ G+ IH ++ + +FV ++++D Y + G I+ + + FD +P K+ + N+LI GY
Sbjct: 327 ELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGY 386
Query: 235 GMLGEVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQAD-SVK 291
G+VD A+ LFE M G G P ++++++L+ACS G VE G K FD M++ ++
Sbjct: 387 AHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIE 446
Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
P HY+C+VD+LGRAG++E A + IK +P++P ++WGAL ACR++G +LG AAE+
Sbjct: 447 PGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAEN 506
Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
LF L P+ G ++LLSN +A AG+W EA+ VRE +K KK G SW+ +++V F
Sbjct: 507 LFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQA 566
Query: 412 NDR 414
DR
Sbjct: 567 KDR 569
Score = 132 bits (331), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 179/395 (45%), Gaps = 11/395 (2%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY+K P A + +N+VSW ++++ AQN AL EM PN T
Sbjct: 51 MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 110
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
A A GK+IHA ++ G D+F+ + DMY K + A+ +F+ I
Sbjct: 111 FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 170
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
R+ ++N I E++ F E R + + ++F ++AC++ + G +
Sbjct: 171 ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ 230
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
+HG+ +R T + V N ++DFY + +I + IF + K++ SW +L+ Y E
Sbjct: 231 LHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHE 290
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
+ A L+ R+D V ++L+AC+ +E G+ V+ T +
Sbjct: 291 DEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSA 350
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
+VD+ G+ G +ED+ + +P E + +L+G G V++ E + P+
Sbjct: 351 LVDMYGKCGCIEDSEQAFDEMP-EKNLVTRNSLIGGYAHQGQVDMALALFEE---MAPRG 406
Query: 360 CG------YYILLSNMYAEAGKWDEASKVRELMKS 388
CG ++ L + + AG + K+ + M+S
Sbjct: 407 CGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRS 441
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 97/202 (48%), Gaps = 8/202 (3%)
Query: 74 LRPGKEIHARIIRKGLNFDL----FLTNALTDMYAKCGCLNLAQNVFNIS-FRDEVSYNI 128
+R G+ +HARI++ D FL N L +MY+K A+ V ++ R+ VS+
Sbjct: 22 MRLGRVVHARIVK---TLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTS 78
Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
LI G +Q S +L F EMR G+ + +F A A A+L GK+IH + ++
Sbjct: 79 LISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCG 138
Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
+FV S D Y ++ D A K+FD +P ++ +WN I G AI F
Sbjct: 139 RILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFI 198
Query: 249 AMREDGVGYDPVSYIAILTACS 270
R + +++ A L ACS
Sbjct: 199 EFRRIDGHPNSITFCAFLNACS 220
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 282 bits (721), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 149/413 (36%), Positives = 251/413 (60%), Gaps = 4/413 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF--PNS 58
+Y+K +A +F ++ EK++V+W ++++ +N +AL++ +M ++ P+S
Sbjct: 417 LYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDS 476
Query: 59 VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N 117
+T+V ACA LR G ++H +I+ GL ++F+ ++L D+Y+KCG +A VF +
Sbjct: 477 DIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTS 536
Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
+S + V++N +I YS+ + S+ LF+ M G+ D VS + A ++ A++ +G
Sbjct: 537 MSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKG 596
Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
K +HG T+R + + + N+++D Y + G A IF + K +WN +I GYG
Sbjct: 597 KSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSH 656
Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
G+ TA++LF+ M++ G D V+++++++AC+H G VE+GK F+ M+ D ++P H
Sbjct: 657 GDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEH 716
Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
YA MVDLLGRAGL+E+A IK +P+E D++IW LL A R + NVELG +AE L ++
Sbjct: 717 YANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRME 776
Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDF 409
P+ Y+ L N+Y EAG +EA+K+ LMK + K PGCSW++ D F
Sbjct: 777 PERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSDRTNVF 829
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 165/324 (50%), Gaps = 5/324 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY+K EA +F + +K + WNAMVA +A+N AL L M + P+S T
Sbjct: 316 MYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFT 375
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
L+NV+ C+ GK +HA + ++ + + +AL +Y+KCGC A VF ++
Sbjct: 376 LSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSME 435
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMR--LLGMKHDVVSFMGAISACANLAAIKQG 177
+D V++ LI G + E+L +F +M+ +K D +ACA L A++ G
Sbjct: 436 EKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFG 495
Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
++HG I+ L ++FV +S++D Y++ G ++A K+F + ++ +WN++I Y
Sbjct: 496 LQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRN 555
Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
+ +I+LF M G+ D VS ++L A S + KGK + P++ H
Sbjct: 556 NLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGI-PSDTHL 614
Query: 298 A-CMVDLLGRAGLMEDAVKLIKNL 320
++D+ + G + A + K +
Sbjct: 615 KNALIDMYVKCGFSKYAENIFKKM 638
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 161/326 (49%), Gaps = 8/326 (2%)
Query: 18 IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPA-CARGHFLRP 76
++ +++ WN+M+ + + R + + R M + P++ +L+ V+ C G+F R
Sbjct: 128 VSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRRE 187
Query: 77 -GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDE---VSYNILIVG 132
GK+IH ++R L+ D FL AL DMY K G A VF + D+ V +N++IVG
Sbjct: 188 EGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVF-VEIEDKSNVVLWNVMIVG 246
Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
+ + C SL L+ + +K SF GA+ AC+ G++IH ++ LH
Sbjct: 247 FGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHND 306
Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
+V S+L Y++ G + A +F C+ K WN ++ Y +A++LF MR+
Sbjct: 307 PYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQ 366
Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
V D + +++ CS GL GK E+ ++ T + ++ L + G D
Sbjct: 367 KSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPD 426
Query: 313 AVKLIKNLPVEPDANIWGALL-GACR 337
A + K++ E D WG+L+ G C+
Sbjct: 427 AYLVFKSME-EKDMVAWGSLISGLCK 451
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 158/330 (47%), Gaps = 27/330 (8%)
Query: 25 SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV-TLTNVLPACARGHFLRPGKEIHAR 83
S N+ + Q L+AL L + + F SV T ++L AC+ L GK IH
Sbjct: 26 SINSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHGS 85
Query: 84 IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--------ISFRDEVSYNILIVGYSQ 135
++ G +D F+ +L +MY KCG L+ A VF+ +S RD +N +I GY +
Sbjct: 86 VVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFK 145
Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK--QGKEIHGVTIRKHLHTHL 193
E + F M + G++ D S +S + +GK+IHG +R L T
Sbjct: 146 FRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDS 205
Query: 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSAS---WNTLILGYGMLGEVDTAINLFEAM 250
F+ +++D Y + G A ++F + ++D ++ WN +I+G+G G +++++L+
Sbjct: 206 FLKTALIDMYFKFGLSIDAWRVF--VEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLA 263
Query: 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH---YAC--MVDLLG 305
+ + V S+ L ACS + + ++ D VK +H Y C ++ +
Sbjct: 264 KNNSVKLVSTSFTGALGACSQ----SENSGFGRQIHCDVVK-MGLHNDPYVCTSLLSMYS 318
Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
+ G++ +A + + + V+ IW A++ A
Sbjct: 319 KCGMVGEA-ETVFSCVVDKRLEIWNAMVAA 347
>sp|Q9LIE7|PP246_ARATH Pentatricopeptide repeat-containing protein At3g22150,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2
SV=1
Length = 820
Score = 281 bits (720), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 145/421 (34%), Positives = 256/421 (60%), Gaps = 8/421 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY++ ++ +F ++ E+++VSWN M++ F QN L+ + L LV EM + +T
Sbjct: 362 MYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYIT 421
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
+T +L A + GK+ HA +IR+G+ F+ + + L DMY+K G + ++Q +F S
Sbjct: 422 VTALLSAASNLRNKEIGKQTHAFLIRQGIQFE-GMNSYLIDMYSKSGLIRISQKLFEGSG 480
Query: 121 ---RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
RD+ ++N +I GY+Q ++ +F +M ++ + V+ + AC+ + ++ G
Sbjct: 481 YAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLG 540
Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
K++HG +IR++L ++FVA++++D Y+++G I A +F ++S ++ T+ILGYG
Sbjct: 541 KQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQH 600
Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMH 296
G + AI+LF +M+E G+ D ++++A+L+ACS+ GL+++G K F+EM + +++P+ H
Sbjct: 601 GMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEH 660
Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVELGAWAAEHL--F 353
Y C+ D+LGR G + +A + +K L E + A +WG+LLG+C+++G +EL +E L F
Sbjct: 661 YCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKF 720
Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
GY +LLSNMYAE KW KVR M+ + KK G S ++ V FV D
Sbjct: 721 DKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRD 780
Query: 414 R 414
+
Sbjct: 781 Q 781
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/420 (25%), Positives = 196/420 (46%), Gaps = 43/420 (10%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
MYA+ + +F + E+NI WN M+ + QN +++++L E E + V
Sbjct: 260 MYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEV 319
Query: 60 TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
T A + + G++ H + + + + N+L MY++CG ++ + VF ++
Sbjct: 320 TYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSM 379
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
RD VS+N +I + Q E L L EM+ G K D ++ +SA +NL + GK
Sbjct: 380 RERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGK 439
Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD--CLPVKDSASWNTLILGYGM 236
+ H IR+ + + + ++D Y++SG I ++ K+F+ +D A+WN++I GY
Sbjct: 440 QTHAFLIRQGIQFE-GMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQ 498
Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK----------------- 279
G + +F M E + + V+ +IL ACS G V+ GK
Sbjct: 499 NGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFV 558
Query: 280 --------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP---V 322
KY ++M + + + + Y M+ G+ G+ E A+ L ++ +
Sbjct: 559 ASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGI 618
Query: 323 EPDANIWGALLGACRIYGNVELGAWAAEHL---FMLKPQHCGYYILLSNMYAEAGKWDEA 379
+PDA + A+L AC G ++ G E + + ++P +Y +++M G+ +EA
Sbjct: 619 KPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSS-EHYCCITDMLGRVGRVNEA 677
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 162/337 (48%), Gaps = 10/337 (2%)
Query: 14 LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
+F N+ KN+V+WN +++ + + +A + M P+ V+ NV PA +
Sbjct: 170 VFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRS 229
Query: 74 LRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVS-YNILI 130
++ + +++ G + DLF+ ++ MYA+ G + ++ VF+ + +N +I
Sbjct: 230 IKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMI 289
Query: 131 VGYSQTSDCSESLSLFSEMRLLGMKH---DVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
Y Q ES+ LF E +G K D V+++ A SA + L ++ G++ HG +
Sbjct: 290 GVYVQNDCLVESIELFLEA--IGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKN 347
Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
+ + NS++ Y+R G + + +F + +D SWNT+I + G D + L
Sbjct: 348 FRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLV 407
Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307
M++ G D ++ A+L+A S+ E GK+ + ++ M+ + ++D+ ++
Sbjct: 408 YEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEGMN-SYLIDMYSKS 466
Query: 308 GLMEDAVKLIKNLP-VEPDANIWGALLGACRIYGNVE 343
GL+ + KL + E D W +++ G+ E
Sbjct: 467 GLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTE 503
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 134/286 (46%), Gaps = 12/286 (4%)
Query: 8 PAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN--SVTLTNVL 65
P A LF I + V WN ++ F N L +AL M F N + T ++ L
Sbjct: 55 PQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSSTL 114
Query: 66 PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC----GCL--NLAQNVF-NI 118
ACA L+ GK +H +IR N + N+L +MY C C ++ + VF N+
Sbjct: 115 KACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFDNM 174
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
++ V++N LI Y +T +E+ F M + +K VSF+ A + +IK+
Sbjct: 175 RRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKKAN 234
Query: 179 EIHGVTIR--KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
+G+ ++ LFV +S + Y G I+ + ++FD ++ WNT+I Y
Sbjct: 235 VFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQ 294
Query: 237 LGEVDTAINLF-EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281
+ +I LF EA+ + D V+Y+ +A S VE G+++
Sbjct: 295 NDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQF 340
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 12/239 (5%)
Query: 107 GCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMG 163
G LA+ +F+ I V +N +I+G+ + E+L +S M+ D ++
Sbjct: 53 GNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSS 112
Query: 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS------GRIDLANKIFD 217
+ ACA +K GK +H IR ++ V NS+++ Y D+ K+FD
Sbjct: 113 TLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFD 172
Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
+ K+ +WNTLI Y G A F M V PVS++ + A S ++K
Sbjct: 173 NMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKK 232
Query: 278 GKKYFDEM--QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLG 334
++ M D + + + G +E + ++ + VE + +W ++G
Sbjct: 233 ANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSC-VERNIEVWNTMIG 290
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 281 bits (719), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 147/426 (34%), Positives = 239/426 (56%), Gaps = 6/426 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHN--EFPNS 58
MY+K R EA +F I +++++SWNAM+A F KAL M N E P+
Sbjct: 151 MYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDE 210
Query: 59 VTLTNVLPACARGHFLRPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVF 116
TLT++L AC+ + GK+IH ++R G + +T +L D+Y KCG L A+ F
Sbjct: 211 FTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAF 270
Query: 117 N-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
+ I + +S++ LI+GY+Q + E++ LF ++ L + D + I A+ A ++
Sbjct: 271 DQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLR 330
Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
QGK++ + ++ V NS++D Y + G +D A K F + +KD SW +I GYG
Sbjct: 331 QGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYG 390
Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTE 294
G ++ +F M + D V Y+A+L+ACSH G++++G++ F ++ + +KP
Sbjct: 391 KHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRV 450
Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
HYAC+VDLLGRAG +++A LI +P++P+ IW LL CR++G++ELG + L
Sbjct: 451 EHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLR 510
Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
+ ++ Y+++SN+Y +AG W+E REL + KK G SWV+ EV F +
Sbjct: 511 IDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGED 570
Query: 415 MKTFTP 420
TP
Sbjct: 571 SHPLTP 576
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/446 (27%), Positives = 206/446 (46%), Gaps = 62/446 (13%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY K P A +F ++ E+N+VSW+A+++ N +L L EM +PN T
Sbjct: 50 MYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFT 109
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
+ L AC + L G +IH ++ G + + N+L DMY+KCG +N A+ VF I
Sbjct: 110 FSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIV 169
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH--DVVSFMGAISACANLAAIKQG 177
R +S+N +I G+ S++L F M+ +K D + + AC++ I G
Sbjct: 170 DRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAG 229
Query: 178 KEIHGVTIRKHLH--THLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
K+IHG +R H + + S++D Y + G + A K FD + K SW++LILGY
Sbjct: 230 KQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYA 289
Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK-PTE 294
GE A+ LF+ ++E D + +I+ + L+ +GK +MQA +VK P+
Sbjct: 290 QEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGK----QMQALAVKLPSG 345
Query: 295 MHYACM---VDLLGRAGLMEDAVKLIKNLP------------------------------ 321
+ + + VD+ + GL+++A K +
Sbjct: 346 LETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEM 405
Query: 322 ----VEPDANIWGALLGACRIYGNVELGAWAAEHLFM-------LKPQHCGYYILLSNMY 370
+EPD + A+L AC G ++ G E LF +KP+ +Y + ++
Sbjct: 406 LRHNIEPDEVCYLAVLSACSHSGMIKEG----EELFSKLLETHGIKPR-VEHYACVVDLL 460
Query: 371 AEAGKWDEASKVRELMKSREAKKNPG 396
AG+ EA + L+ + K N G
Sbjct: 461 GRAGRLKEA---KHLIDTMPIKPNVG 483
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 4/230 (1%)
Query: 55 FPNS-VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ 113
PN L ++L C R G ++H +++ G +L +N L DMY KC +A
Sbjct: 2 IPNQRQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAY 61
Query: 114 NVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172
VF+ + R+ VS++ L+ G+ D SLSLFSEM G+ + +F + AC L
Sbjct: 62 KVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLN 121
Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
A+++G +IHG ++ + V NS++D Y++ GRI+ A K+F + + SWN +I
Sbjct: 122 ALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIA 181
Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSY--IAILTACSHGGLVEKGKK 280
G+ G A++ F M+E + P + ++L ACS G++ GK+
Sbjct: 182 GFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQ 231
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 78/171 (45%), Gaps = 1/171 (0%)
Query: 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
+ C QG ++H ++ +L +N ++D Y + +A K+FD +P ++
Sbjct: 13 LRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNV 72
Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
SW+ L+ G+ + G++ +++LF M G+ + ++ L AC +EKG +
Sbjct: 73 VSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGF 132
Query: 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
+ +VD+ + G + +A K+ + + V+ W A++
Sbjct: 133 CLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRI-VDRSLISWNAMIAG 182
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 281 bits (718), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 152/418 (36%), Positives = 239/418 (57%), Gaps = 4/418 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQ--NRLEL-KALQLVREMPIHNEFPN 57
MYAK +A +F A ++V +NAM+ +++ + EL +AL + R+M P+
Sbjct: 394 MYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPS 453
Query: 58 SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN 117
+T ++L A A L K+IH + + GLN D+F +AL D+Y+ C CL ++ VF+
Sbjct: 454 LLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFD 513
Query: 118 -ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176
+ +D V +N + GY Q S+ E+L+LF E++L + D +F ++A NLA+++
Sbjct: 514 EMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQL 573
Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
G+E H +++ L + ++ N++LD Y + G + A+K FD +D WN++I Y
Sbjct: 574 GQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYAN 633
Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296
GE A+ + E M +G+ + ++++ +L+ACSH GLVE G K F+ M ++P H
Sbjct: 634 HGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEH 693
Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
Y CMV LLGRAG + A +LI+ +P +P A +W +LL C GNVEL AAE +
Sbjct: 694 YVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSD 753
Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
P+ G + +LSN+YA G W EA KVRE MK K PG SW+ EV F+ D+
Sbjct: 754 PKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDK 811
Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 112/430 (26%), Positives = 212/430 (49%), Gaps = 41/430 (9%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
Y K R A LF+ + KNI+SW +++ + QN L +A++L M P+
Sbjct: 294 YVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYAC 353
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF 120
+++L +CA H L G ++HA I+ L D ++TN+L DMYAKC CL A+ VF+I +
Sbjct: 354 SSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAA 413
Query: 121 RDEVSYNILIVGYSQTS---DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177
D V +N +I GYS+ + E+L++F +MR ++ +++F+ + A A+L ++
Sbjct: 414 ADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLS 473
Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
K+IHG+ + L+ +F ++++D Y+ + + +FD + VKD WN++ GY
Sbjct: 474 KQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQ 533
Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
E + A+NLF ++ D ++ ++TA + V+ G+++ ++ ++
Sbjct: 534 SENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYIT 593
Query: 298 ACMVDLLGRAGLMEDAVKLIKNLP----------------------------------VE 323
++D+ + G EDA K + +E
Sbjct: 594 NALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIE 653
Query: 324 PDANIWGALLGACRIYGNVELGAWAAEHL--FMLKPQHCGYYILLSNMYAEAGKWDEASK 381
P+ + +L AC G VE G E + F ++P+ +Y+ + ++ AG+ ++A +
Sbjct: 654 PNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPE-TEHYVCMVSLLGRAGRLNKARE 712
Query: 382 VRELMKSREA 391
+ E M ++ A
Sbjct: 713 LIEKMPTKPA 722
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 121/434 (27%), Positives = 201/434 (46%), Gaps = 51/434 (11%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
Y K A +F + EK+ V+W M++ + +LQL ++ N P+ L
Sbjct: 193 YLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYIL 252
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
+ VL AC+ FL GK+IHA I+R GL D L N L D Y KCG + A +FN +
Sbjct: 253 STVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPN 312
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
++ +S+ L+ GY Q + E++ LF+ M G+K D+ + +++CA+L A+ G ++
Sbjct: 313 KNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQV 372
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG-- 238
H TI+ +L +V NS++D Y + + A K+FD D +N +I GY LG
Sbjct: 373 HAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQ 432
Query: 239 -EVDTAINLFEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKG-------- 278
E+ A+N+F MR + ++++++L A + HG + + G
Sbjct: 433 WELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAG 492
Query: 279 ----------------KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV 322
+ FDEM+ + +A V + E+A+ L L +
Sbjct: 493 SALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYV----QQSENEEALNLFLELQL 548
Query: 323 ---EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ-HCGYYIL--LSNMYAEAGKW 376
PD + ++ A +V+LG H +LK C YI L +MYA+ G
Sbjct: 549 SRERPDEFTFANMVTAAGNLASVQLG--QEFHCQLLKRGLECNPYITNALLDMYAKCGSP 606
Query: 377 DEASKVRELMKSRE 390
++A K + SR+
Sbjct: 607 EDAHKAFDSAASRD 620
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 143/276 (51%), Gaps = 8/276 (2%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREM-PIHNEFPNSV 59
+Y+++ A +F + E+N+VSW+ MV+ + + ++L + E + PN
Sbjct: 88 LYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEY 147
Query: 60 TLTNVLPACA----RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
L++ + AC+ RG ++ ++ + +++ G + D+++ L D Y K G ++ A+ V
Sbjct: 148 ILSSFIQACSGLDGRGRWMVF--QLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLV 205
Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
F+ + + V++ +I G + SL LF ++ + D +SAC+ L +
Sbjct: 206 FDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFL 265
Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
+ GK+IH +R L + N ++D Y + GR+ A+K+F+ +P K+ SW TL+ GY
Sbjct: 266 EGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGY 325
Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270
A+ LF +M + G+ D + +ILT+C+
Sbjct: 326 KQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCA 361
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 19/299 (6%)
Query: 51 IHNEFPNSVTL------TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104
++ +FP+++ + +L A L +H +II GL D +L+N L ++Y+
Sbjct: 31 VNADFPSTIGIRGRREFARLLQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYS 90
Query: 105 KCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM-RLLGMKHDVVSFM 162
+ G + A+ VF + R+ VS++ ++ + ESL +F E R +
Sbjct: 91 RAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILS 150
Query: 163 GAISACANLAAIKQGK----EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
I AC+ L +G+ ++ ++ ++V ++DFY + G ID A +FD
Sbjct: 151 SFIQACSGLDG--RGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDA 208
Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278
LP K + +W T+I G +G ++ LF + ED V D +L+ACS +E G
Sbjct: 209 LPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGG 268
Query: 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI--WGALLGA 335
K+ + ++ ++D + G + A KL + P+ NI W LL
Sbjct: 269 KQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGM---PNKNIISWTTLLSG 324
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 281 bits (718), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 149/425 (35%), Positives = 237/425 (55%), Gaps = 34/425 (8%)
Query: 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81
+V++NAM++ + +AL++VR M + T +V+ ACA L+ GK++H
Sbjct: 250 KLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVH 309
Query: 82 ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCS 140
A ++R+ +F N+L +Y KCG + A+ +F + +D VS+N L+ GY +
Sbjct: 310 AYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIG 368
Query: 141 ES-------------------------------LSLFSEMRLLGMKHDVVSFMGAISACA 169
E+ L LFS M+ G + +F GAI +CA
Sbjct: 369 EAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCA 428
Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNT 229
L A G++ H ++ + L N+++ Y + G ++ A ++F +P DS SWN
Sbjct: 429 VLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNA 488
Query: 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-D 288
LI G G A++++E M + G+ D ++ + +LTACSH GLV++G+KYFD M+
Sbjct: 489 LIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVY 548
Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWA 348
+ P HYA ++DLL R+G DA +I++LP +P A IW ALL CR++GN+ELG A
Sbjct: 549 RIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIA 608
Query: 349 AEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQD 408
A+ LF L P+H G Y+LLSNM+A G+W+E ++VR+LM+ R KK CSW++ +V
Sbjct: 609 ADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHT 668
Query: 409 FVVND 413
F+V+D
Sbjct: 669 FLVDD 673
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/397 (22%), Positives = 170/397 (42%), Gaps = 79/397 (19%)
Query: 18 IAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR-GHFLRP 76
+ ++ V +NAM+ F+ N A+ L +M P++ T +VL A +
Sbjct: 108 VCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQ 167
Query: 77 GKEIHARIIRKGLNFDLFLTNALTDMYAKCGC----LNLAQNVFN-ISFRDE-------- 123
+ HA ++ G + ++NAL +Y+KC L+ A+ VF+ I +DE
Sbjct: 168 CVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMT 227
Query: 124 ------------------------VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
V+YN +I GY E+L + M G++ D
Sbjct: 228 GYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEF 287
Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
++ I ACA ++ GK++H +R+ + F NS++ Y + G+ D A IF+ +
Sbjct: 288 TYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHF-DNSLVSLYYKCGKFDEARAIFEKM 346
Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
P KD SWN L+ GY G + A +F+ M+E + +S++ +++ + G E+G
Sbjct: 347 PAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI----LSWMIMISGLAENGFGEEGL 402
Query: 280 KYFDEMQADSVKPTEMHYA-----------------------------------CMVDLL 304
K F M+ + +P + ++ ++ +
Sbjct: 403 KLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMY 462
Query: 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGN 341
+ G++E+A ++ + +P D+ W AL+ A +G+
Sbjct: 463 AKCGVVEEARQVFRTMPC-LDSVSWNALIAALGQHGH 498
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 119/254 (46%), Gaps = 19/254 (7%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
Y S EA +F + EKNI+SW M++ A+N + L+L M P
Sbjct: 361 YVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAF 420
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF 120
+ + +CA G++ HA++++ G + L NAL MYAKCG + A+ VF +
Sbjct: 421 SGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPC 480
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
D VS+N LI Q +E++ ++ EM G++ D ++ + ++AC++ + QG
Sbjct: 481 LDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQG--- 537
Query: 181 HGVTIRKHLHTHLFVAN---------SILDFYTRSGRIDLANKIFDCLPVKDSAS-WNTL 230
RK+ + V ++D RSG+ A + + LP K +A W L
Sbjct: 538 -----RKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEAL 592
Query: 231 ILGYGMLGEVDTAI 244
+ G + G ++ I
Sbjct: 593 LSGCRVHGNMELGI 606
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 86/390 (22%), Positives = 155/390 (39%), Gaps = 86/390 (22%)
Query: 74 LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---------------- 117
L+ + +H II G + N L D+Y K LN A+ +F+
Sbjct: 30 LQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSG 89
Query: 118 ------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
+ RD V YN +I G+S +D +++LF +M+ G K D
Sbjct: 90 YCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNF 149
Query: 160 SFMGAISACANLAAI-KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR----IDLANK 214
+F ++ A +A KQ + H ++ V+N+++ Y++ + A K
Sbjct: 150 TFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARK 209
Query: 215 IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED--------------------- 253
+FD + KD SW T++ GY G D L E M ++
Sbjct: 210 VFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQE 269
Query: 254 -----------GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA---C 299
G+ D +Y +++ AC+ GL++ GK ++ A ++ + +
Sbjct: 270 ALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGK----QVHAYVLRREDFSFHFDNS 325
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--LKP 357
+V L + G ++A + + +P + D W ALL G V G L +K
Sbjct: 326 LVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLS-----GYVSSGHIGEAKLIFKEMKE 379
Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMK 387
++ ++++ + AE G +E K+ MK
Sbjct: 380 KNILSWMIMISGLAENGFGEEGLKLFSCMK 409
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 12/150 (8%)
Query: 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
+++ + +HG I + N ++D Y +S ++ A ++FD + D + T++
Sbjct: 29 SLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVS 88
Query: 233 GYGMLGEVDTAINLFE----AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288
GY G++ A +FE MR D V Y A++T SH F +M+ +
Sbjct: 89 GYCASGDITLARGVFEKAPVCMR------DTVMYNAMITGFSHNNDGYSAINLFCKMKHE 142
Query: 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
KP +A + L G A + +D + ++
Sbjct: 143 GFKPDNFTFASV--LAGLALVADDEKQCVQ 170
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK EA +F + + VSWNA++A Q+ +A+ + EM P+ +T
Sbjct: 461 MYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRIT 520
Query: 61 LTNVLPACARGHFLRPGKE 79
L VL AC+ + G++
Sbjct: 521 LLTVLTACSHAGLVDQGRK 539
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 281 bits (718), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 145/422 (34%), Positives = 246/422 (58%), Gaps = 11/422 (2%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
Y+ S AS LF +K++V+W AM+ F +N +A+ EM N +T+
Sbjct: 148 YSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTV 207
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
+VL A + +R G+ +H + G + D+F+ ++L DMY KC C + AQ VF+ +
Sbjct: 208 VSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMP 267
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV----SFMGAISACANLAAIK 175
R+ V++ LI GY Q+ + + +F EM +K DV + +SACA++ A+
Sbjct: 268 SRNVVTWTALIAGYVQSRCFDKGMLVFEEM----LKSDVAPNEKTLSSVLSACAHVGALH 323
Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
+G+ +H I+ + + +++D Y + G ++ A +F+ L K+ +W +I G+
Sbjct: 324 RGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFA 383
Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE 294
G A +LF M V + V+++A+L+AC+HGGLVE+G++ F M+ +++P
Sbjct: 384 AHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKA 443
Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354
HYACMVDL GR GL+E+A LI+ +P+EP +WGAL G+C ++ + ELG +AA +
Sbjct: 444 DHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIK 503
Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
L+P H G Y LL+N+Y+E+ WDE ++VR+ MK ++ K+PG SW++ + ++ +F+ D
Sbjct: 504 LQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDD 563
Query: 415 MK 416
K
Sbjct: 564 KK 565
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 164/337 (48%), Gaps = 12/337 (3%)
Query: 11 ASYLFHNIAEKNIVSWNAMVANFA-----QNRLELKALQLVREMPIHNEFPNSVTLTNVL 65
A L + +I W++++ +F+ RL A R M + P+ T +L
Sbjct: 55 ARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLA---YRHMRRNGVIPSRHTFPPLL 111
Query: 66 PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEV 124
A + P + HA I++ GL+ D F+ N+L Y+ G + A +F+ +D V
Sbjct: 112 KAVFKLRDSNPF-QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVV 170
Query: 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184
++ +I G+ + SE++ F EM+ G+ + ++ + + A + ++ G+ +HG+
Sbjct: 171 TWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLY 230
Query: 185 IRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
+ + +F+ +S++D Y + D A K+FD +P ++ +W LI GY D
Sbjct: 231 LETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKG 290
Query: 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303
+ +FE M + V + + ++L+AC+H G + +G++ M +S++ ++DL
Sbjct: 291 MLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDL 350
Query: 304 LGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
+ G +E+A+ + + L E + W A++ +G
Sbjct: 351 YVKCGCLEEAILVFERLH-EKNVYTWTAMINGFAAHG 386
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 117/234 (50%), Gaps = 3/234 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY K S +A +F + +N+V+W A++A + Q+R K + + EM + PN T
Sbjct: 249 MYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKT 308
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
L++VL ACA L G+ +H +I+ + + L D+Y KCGCL A VF +
Sbjct: 309 LSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLH 368
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
++ ++ +I G++ ++ LF M + + V+FM +SACA+ +++G+
Sbjct: 369 EKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRR 428
Query: 180 IH-GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS-ASWNTLI 231
+ + R ++ ++D + R G ++ A + + +P++ + W L
Sbjct: 429 LFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALF 482
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 148/420 (35%), Positives = 254/420 (60%), Gaps = 8/420 (1%)
Query: 2 YAKSSRPAEASYLFHNIAE-KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
Y+K EA +F+ + E ++ VSWN+M+ + Q++ KAL L +EM + T
Sbjct: 183 YSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFT 242
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG-CLNL--AQNVFN 117
L +VL A L G++ H ++I+ G + + + + L D Y+KCG C + ++ VF
Sbjct: 243 LASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQ 302
Query: 118 -ISFRDEVSYNILIVGYSQTSDCSE-SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
I D V +N +I GYS + SE ++ F +M+ +G + D SF+ SAC+NL++
Sbjct: 303 EILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPS 362
Query: 176 QGKEIHGVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
Q K+IHG+ I+ H+ ++ + V N+++ Y +SG + A +FD +P ++ S+N +I GY
Sbjct: 363 QCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGY 422
Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPT 293
G A+ L++ M + G+ + ++++A+L+AC+H G V++G++YF+ M+ ++P
Sbjct: 423 AQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPE 482
Query: 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353
HY+CM+DLLGRAG +E+A + I +P +P + W ALLGACR + N+ L AA L
Sbjct: 483 AEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELM 542
Query: 354 MLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
+++P Y++L+NMYA+A KW+E + VR+ M+ + +K PGCSW++ + + FV D
Sbjct: 543 VMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAED 602
Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 111/434 (25%), Positives = 196/434 (45%), Gaps = 57/434 (13%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
YAK S+ A LF I + + VS+N +++ +A R A+ L + M + TL
Sbjct: 84 YAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTL 143
Query: 62 TNVLPACA-RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN--I 118
+ ++ AC R + K++H + G + + NA Y+K G L A +VF
Sbjct: 144 SGLIAACCDRVDLI---KQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMD 200
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
RDEVS+N +IV Y Q + +++L+L+ EM G K D+ + ++A +L + G+
Sbjct: 201 ELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGR 260
Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL---ANKIFDCLPVKDSASWNTLILGYG 235
+ HG I+ H + V + ++DFY++ G D + K+F + D WNT+I GY
Sbjct: 261 QFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYS 320
Query: 236 MLGEV-DTAINLFEAMREDGVGYDPVSYIAILTACS-----------HG----------- 272
M E+ + A+ F M+ G D S++ + +ACS HG
Sbjct: 321 MNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNR 380
Query: 273 --------------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318
G ++ + FD M + + + CM+ + G +A+ L +
Sbjct: 381 ISVNNALISLYYKSGNLQDARWVFDRMP----ELNAVSFNCMIKGYAQHGHGTEALLLYQ 436
Query: 319 NL---PVEPDANIWGALLGACRIYGNVELGAW---AAEHLFMLKPQHCGYYILLSNMYAE 372
+ + P+ + A+L AC G V+ G + F ++P+ +Y + ++
Sbjct: 437 RMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPE-AEHYSCMIDLLGR 495
Query: 373 AGKWDEASKVRELM 386
AGK +EA + + M
Sbjct: 496 AGKLEEAERFIDAM 509
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 147/335 (43%), Gaps = 46/335 (13%)
Query: 74 LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ---------NVFN------- 117
L GK +HA ++ + +L+N ++Y+KCG L+ A+ NVF+
Sbjct: 24 LFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKA 83
Query: 118 ----------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161
I D VSYN LI GY+ + ++ LF MR LG + D +
Sbjct: 84 YAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTL 143
Query: 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL-P 220
G I+AC + + K++H ++ ++ V N+ + +Y++ G + A +F +
Sbjct: 144 SGLIAACCDRVDLI--KQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDE 201
Query: 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
++D SWN++I+ YG E A+ L++ M G D + ++L A + + G++
Sbjct: 202 LRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQ 261
Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAG---LMEDAVKLIKNLPVEPDANIWGALLGACR 337
+ ++ + ++D + G M D+ K+ + + + PD +W ++
Sbjct: 262 FHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEI-LSPDLVVWNTMISGYS 320
Query: 338 IYGNVELGAWAAEHLFML-----KPQHCGYYILLS 367
+ N EL A + + +P C + + S
Sbjct: 321 M--NEELSEEAVKSFRQMQRIGHRPDDCSFVCVTS 353
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
+Y KS +A ++F + E N VS+N M+ +AQ+ +AL L + M PN +T
Sbjct: 390 LYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKIT 449
Query: 61 LTNVLPACARGHFLRPGKE 79
VL ACA + G+E
Sbjct: 450 FVAVLSACAHCGKVDEGQE 468
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 278 bits (711), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 156/429 (36%), Positives = 252/429 (58%), Gaps = 21/429 (4%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE------ 54
MY+ + +A +F I ++NIVSW +M+ + N L A+ L +++ +
Sbjct: 120 MYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAM 179
Query: 55 FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG--CLNLA 112
F +S+ L +V+ AC+R + IH+ +I++G + + + N L D YAK G + +A
Sbjct: 180 FLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVA 239
Query: 113 QNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS----- 166
+ +F+ I +D VSYN ++ Y+Q+ +E+ +F + +K+ VV+F AI+
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL----VKNKVVTF-NAITLSTVL 294
Query: 167 -ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSA 225
A ++ A++ GK IH IR L + V SI+D Y + GR++ A K FD + K+
Sbjct: 295 LAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVR 354
Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285
SW +I GYGM G A+ LF AM + GV + ++++++L ACSH GL +G ++F+ M
Sbjct: 355 SWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAM 414
Query: 286 QAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344
+ V+P HY CMVDLLGRAG ++ A LI+ + ++PD+ IW +LL ACRI+ NVEL
Sbjct: 415 KGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVEL 474
Query: 345 GAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRD 404
+ LF L +CGYY+LLS++YA+AG+W + +VR +MK+R K PG S ++
Sbjct: 475 AEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNG 534
Query: 405 EVQDFVVND 413
EV F++ D
Sbjct: 535 EVHVFLIGD 543
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 187/392 (47%), Gaps = 27/392 (6%)
Query: 14 LFHNIAEK-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGH 72
LF+ +K ++ SWN+++A+ A++ +AL M + +P + + AC+
Sbjct: 31 LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90
Query: 73 FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIV 131
+ GK+ H + G D+F+++AL MY+ CG L A+ VF+ I R+ VS+ +I
Sbjct: 91 DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150
Query: 132 GYSQTSDCSESLSLFSEMRL------LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
GY + +++SLF ++ + M D + + ISAC+ + A + IH I
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVI 210
Query: 186 RKHLHTHLFVANSILDFYTRSGR--IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243
++ + V N++LD Y + G + +A KIFD + KD S+N+++ Y G + A
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270
Query: 244 INLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
+F + + V ++ ++ +L A SH G + GK D++ ++ + ++D
Sbjct: 271 FEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIID 330
Query: 303 LLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF------MLK 356
+ + G +E A K + + W A++ ++G+ A A LF ++
Sbjct: 331 MYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMHGH----AAKALELFPAMIDSGVR 385
Query: 357 PQHCGYYILL-----SNMYAEAGKWDEASKVR 383
P + + +L + ++ E +W A K R
Sbjct: 386 PNYITFVSVLAACSHAGLHVEGWRWFNAMKGR 417
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 278 bits (710), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 257/415 (61%), Gaps = 1/415 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
Y+KS P ++ F + +K+ +W+++++ FAQN L +L+ +++M N P+
Sbjct: 59 FYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHV 118
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
L + +CA G+ +H ++ G + D+F+ ++L DMYAKCG + A+ +F+ +
Sbjct: 119 LPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMP 178
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
R+ V+++ ++ GY+Q + E+L LF E + + SF IS CAN ++ G++
Sbjct: 179 QRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQ 238
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
IHG++I+ + FV +S++ Y++ G + A ++F+ +PVK+ WN ++ Y
Sbjct: 239 IHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSH 298
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
I LF+ M+ G+ + ++++ +L ACSH GLV++G+ YFD+M+ ++PT+ HYA
Sbjct: 299 TQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESRIEPTDKHYAS 358
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
+VD+LGRAG +++A+++I N+P++P ++WGALL +C ++ N EL A+AA+ +F L P
Sbjct: 359 LVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVS 418
Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
G +I LSN YA G++++A+K R+L++ R KK G SWV+ R++V F +R
Sbjct: 419 SGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGER 473
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 164/350 (46%), Gaps = 11/350 (3%)
Query: 49 MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108
+P HN + ++L + AR G ++H +++ GL+ + N L + Y+K
Sbjct: 10 VPCHN----YNQICDLLLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQL 65
Query: 109 LNLAQNVFNISFRDEVSYNILIVG-YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167
++ F S + + I+ ++Q SL +M ++ D A +
Sbjct: 66 PFDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKS 125
Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
CA L+ G+ +H ++++ +FV +S++D Y + G I A K+FD +P ++ +W
Sbjct: 126 CAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTW 185
Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
+ ++ GY +GE + A+ LF+ + + + S+ ++++ C++ L+E G++
Sbjct: 186 SGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIK 245
Query: 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE--LG 345
S + + +V L + G+ E A ++ +PV+ + IW A+L A + + + +
Sbjct: 246 SSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVK-NLGIWNAMLKAYAQHSHTQKVIE 304
Query: 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395
+ L +KP + +L N + AG DE + MK E++ P
Sbjct: 305 LFKRMKLSGMKPNFITFLNVL-NACSHAGLVDEGRYYFDQMK--ESRIEP 351
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 277 bits (709), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 145/415 (34%), Positives = 240/415 (57%), Gaps = 7/415 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY K + +A LF + ++N++SW M++ +++ ++ KAL+L+ M N PN T
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
++VL +C + + + +H II++GL D+F+ +AL D++AK G A +VF+ +
Sbjct: 165 YSSVLRSC---NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMV 221
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
D + +N +I G++Q S +L LF M+ G + + + AC LA ++ G +
Sbjct: 222 TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQ 281
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
H V I K+ L + N+++D Y + G ++ A ++F+ + +D +W+T+I G G
Sbjct: 282 AH-VHIVKY-DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGY 339
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA-DSVKPTEMHYA 298
A+ LFE M+ G + ++ + +L ACSH GL+E G YF M+ + P HY
Sbjct: 340 SQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYG 399
Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
CM+DLLG+AG ++DAVKL+ + EPDA W LLGACR+ N+ L +AA+ + L P+
Sbjct: 400 CMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPE 459
Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
G Y LLSN+YA + KWD ++R M+ R KK PGCSW++ ++ F++ D
Sbjct: 460 DAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGD 514
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 41 KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100
+A++ + + H + +S T + ++ C + G I + G +FL N L
Sbjct: 44 RAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLI 103
Query: 101 DMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
+MY K LN A +F+ + R+ +S+ +I YS+ ++L L M ++ +V
Sbjct: 104 NMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVY 163
Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
++ + +C ++ ++ +H I++ L + +FV ++++D + + G + A +FD +
Sbjct: 164 TYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEM 220
Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
D+ WN++I G+ D A+ LF+ M+ G + + ++L AC+ L+E G
Sbjct: 221 VTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG- 279
Query: 280 KYFDEMQADS--VKPTE--MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
MQA VK + + +VD+ + G +EDA+++ + E D W ++
Sbjct: 280 -----MQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 98/211 (46%), Gaps = 30/211 (14%)
Query: 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH----- 192
D ++ ++ G+ D ++ I C + A+ +G I +HL+ +
Sbjct: 41 DLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGN-----LICRHLYFNGHRPM 95
Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
+F+ N +++ Y + ++ A+++FD +P ++ SW T+I Y A+ L M
Sbjct: 96 MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR 155
Query: 253 DGVGYDPVSYIAILTACS--------HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLL 304
D V + +Y ++L +C+ H G++++G +++D + ++D+
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEG------LESDVFVRS-----ALIDVF 204
Query: 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
+ G EDA+ + + V DA +W +++G
Sbjct: 205 AKLGEPEDALSVFDEM-VTGDAIVWNSIIGG 234
>sp|Q5XEY7|PP309_ARATH Pentatricopeptide repeat-containing protein At4g14170
OS=Arabidopsis thaliana GN=PCMP-E17 PE=2 SV=2
Length = 477
Score = 276 bits (707), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/393 (36%), Positives = 228/393 (58%), Gaps = 3/393 (0%)
Query: 8 PAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNVLP 66
P S +H + +NI SWN ++ F+++ K++ L M + P+ TL +L
Sbjct: 84 PTSLSVFWH-MPYRNIFSWNIIIGEFSRSGFASKSIDLFLRMWRESCVRPDDFTLPLILR 142
Query: 67 ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVS 125
AC+ + G IH ++ G + LF+++AL MY G L A+ +F+ + RD V
Sbjct: 143 ACSASREAKSGDLIHVLCLKLGFSSSLFVSSALVIMYVDMGKLLHARKLFDDMPVRDSVL 202
Query: 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTI 185
Y + GY Q + L++F EM G D V + + AC L A+K GK +HG I
Sbjct: 203 YTAMFGGYVQQGEAMLGLAMFREMGYSGFALDSVVMVSLLMACGQLGALKHGKSVHGWCI 262
Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
R+ L + N+I D Y + +D A+ +F + +D SW++LILGYG+ G+V +
Sbjct: 263 RRCSCLGLNLGNAITDMYVKCSILDYAHTVFVNMSRRDVISWSSLILGYGLDGDVVMSFK 322
Query: 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305
LF+ M ++G+ + V+++ +L+AC+HGGLVEK YF MQ ++ P HYA + D +
Sbjct: 323 LFDEMLKEGIEPNAVTFLGVLSACAHGGLVEKSWLYFRLMQEYNIVPELKHYASVADCMS 382
Query: 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365
RAGL+E+A K ++++PV+PD + GA+L C++YGNVE+G A L LKP+ YY+
Sbjct: 383 RAGLLEEAEKFLEDMPVKPDEAVMGAVLSGCKVYGNVEVGERVARELIQLKPRKASYYVT 442
Query: 366 LSNMYAEAGKWDEASKVRELMKSREAKKNPGCS 398
L+ +Y+ AG++DEA +R+ MK ++ K PGCS
Sbjct: 443 LAGLYSAAGRFDEAESLRQWMKEKQISKVPGCS 475
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 2/245 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY + A LF ++ ++ V + AM + Q + L + REM +SV
Sbjct: 178 MYVDMGKLLHARKLFDDMPVRDSVLYTAMFGGYVQQGEAMLGLAMFREMGYSGFALDSVV 237
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
+ ++L AC + L+ GK +H IR+ L L NA+TDMY KC L+ A VF N+S
Sbjct: 238 MVSLLMACGQLGALKHGKSVHGWCIRRCSCLGLNLGNAITDMYVKCSILDYAHTVFVNMS 297
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
RD +S++ LI+GY D S LF EM G++ + V+F+G +SACA+ +++
Sbjct: 298 RRDVISWSSLILGYGLDGDVVMSFKLFDEMLKEGIEPNAVTFLGVLSACAHGGLVEKSWL 357
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-DSASWNTLILGYGMLG 238
+ ++ L S+ D +R+G ++ A K + +PVK D A ++ G + G
Sbjct: 358 YFRLMQEYNIVPELKHYASVADCMSRAGLLEEAEKFLEDMPVKPDEAVMGAVLSGCKVYG 417
Query: 239 EVDTA 243
V+
Sbjct: 418 NVEVG 422
>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2
SV=1
Length = 608
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 139/407 (34%), Positives = 240/407 (58%), Gaps = 4/407 (0%)
Query: 11 ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE--FPNSVTLTNVLPAC 68
A LF + E+++VSWN++++ ++ K +++ M I PN VT +++ AC
Sbjct: 85 AEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISAC 144
Query: 69 ARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYN 127
G G+ IH +++ G+ ++ + NA + Y K G L + +F ++S ++ VS+N
Sbjct: 145 VYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWN 204
Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
+IV + Q + L+ F+ R +G + D +F+ + +C ++ ++ + IHG+ +
Sbjct: 205 TMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFG 264
Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
+ + ++LD Y++ GR++ ++ +F + DS +W ++ Y G AI F
Sbjct: 265 GFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHF 324
Query: 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGR 306
E M G+ D V++ +L ACSH GLVE+GK YF+ M + P HY+CMVDLLGR
Sbjct: 325 ELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGR 384
Query: 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366
+GL++DA LIK +P+EP + +WGALLGACR+Y + +LG AAE LF L+P+ Y++L
Sbjct: 385 SGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVML 444
Query: 367 SNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
SN+Y+ +G W +AS++R LMK + + GCS+++ +++ FVV D
Sbjct: 445 SNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGD 491
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 84/169 (49%), Gaps = 5/169 (2%)
Query: 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216
+V S + A+ +C +I+ + +H ++ + H F+ + ++ Y R G A K+F
Sbjct: 33 NVSSLIAAVKSCV---SIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLF 89
Query: 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGL 274
D +P +D SWN+LI GY G + + M VG+ P V+++++++AC +GG
Sbjct: 90 DEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGS 149
Query: 275 VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323
E+G+ + V ++ G+ G + + KL ++L ++
Sbjct: 150 KEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIK 198
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
+Y+K R ++S +FH I + ++W AM+A +A + A++ M + P+ VT
Sbjct: 279 LYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVT 338
Query: 61 LTNVLPACARGHFLRPGK---EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112
T++L AC+ + GK E ++ R D + + + D+ + G L A
Sbjct: 339 FTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHY--SCMVDLLGRSGLLQDA 391
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 276 bits (705), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 241/447 (53%), Gaps = 33/447 (7%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYA R A +F ++ +++V+WN M+ + + L +A +L EM N P+ +
Sbjct: 155 MYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMI 214
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
L N++ AC R +R + I+ +I + D L AL MYA GC+++A+ F +S
Sbjct: 215 LCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMS 274
Query: 120 FR-------------------------------DEVSYNILIVGYSQTSDCSESLSLFSE 148
R D V + +I Y ++ E+L +F E
Sbjct: 275 VRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEE 334
Query: 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208
M G+K DVVS ISACANL + + K +H L + L + N++++ Y + G
Sbjct: 335 MCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGG 394
Query: 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
+D +F+ +P ++ SW+++I M GE A++LF M+++ V + V+++ +L
Sbjct: 395 LDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYG 454
Query: 269 CSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
CSH GLVE+GKK F M + ++ P HY CMVDL GRA L+ +A+++I+++PV +
Sbjct: 455 CSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVV 514
Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
IWG+L+ ACRI+G +ELG +AA+ + L+P H G +L+SN+YA +W++ +R +M+
Sbjct: 515 IWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVME 574
Query: 388 SREAKKNPGCSWVQTRDEVQDFVVNDR 414
+ K G S + + +F++ D+
Sbjct: 575 EKNVFKEKGLSRIDQNGKSHEFLIGDK 601
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 140/309 (45%), Gaps = 33/309 (10%)
Query: 64 VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD 122
+L A ++ L G E+H + D F+ DMYA CG +N A+NVF+ +S RD
Sbjct: 117 ILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRD 176
Query: 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH- 181
V++N +I Y + E+ LF EM+ + D + +SAC ++ + I+
Sbjct: 177 VVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYE 236
Query: 182 -----GVTIRKHLHT-------------------------HLFVANSILDFYTRSGRIDL 211
V + HL T +LFV+ +++ Y++ GR+D
Sbjct: 237 FLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDD 296
Query: 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271
A IFD KD W T+I Y A+ +FE M G+ D VS ++++AC++
Sbjct: 297 AQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACAN 356
Query: 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA 331
G+++K K + + ++ ++++ + G ++ + + +P + W +
Sbjct: 357 LGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNVVSWSS 415
Query: 332 LLGACRIYG 340
++ A ++G
Sbjct: 416 MINALSMHG 424
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 2/247 (0%)
Query: 78 KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI--SFRDEVSYNILIVGYSQ 135
K++HA I+R +N L + + L+ A NVF+ S + + +N + S+
Sbjct: 29 KQLHAHILRTVINHKLNSFLFNLSVSSSSINLSYALNVFSSIPSPPESIVFNPFLRDLSR 88
Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
+S+ ++ + +R +G + D SF+ + A + ++A+ +G E+HGV + FV
Sbjct: 89 SSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFV 148
Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
+D Y GRI+ A +FD + +D +WNT+I Y G VD A LFE M++ V
Sbjct: 149 ETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNV 208
Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
D + I++AC G + + ++ + + V+ +V + AG M+ A +
Sbjct: 209 MPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMARE 268
Query: 316 LIKNLPV 322
+ + V
Sbjct: 269 FFRKMSV 275
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 276 bits (705), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/418 (35%), Positives = 238/418 (56%), Gaps = 4/418 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY+K EA +F + ++N ++W+AMV ++QN L+A++L M P+ T
Sbjct: 265 MYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYT 324
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
+ VL AC+ +L GK++H+ +++ G LF T AL DMYAK GCL A+ F+ +
Sbjct: 325 IVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQ 384
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
RD + LI GY Q SD E+L L+ M+ G+ + + + AC++LA ++ GK+
Sbjct: 385 ERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQ 444
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
+HG TI+ + + +++ Y++ G ++ N +F P KD SWN +I G G+
Sbjct: 445 VHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQ 504
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV--KPTEMHY 297
D A+ LFE M +G+ D V+++ I++ACSH G VE+G YF+ M +D + P HY
Sbjct: 505 GDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFN-MMSDQIGLDPKVDHY 563
Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
ACMVDLL RAG +++A + I++ ++ +W LL AC+ +G ELG +A E L L
Sbjct: 564 ACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGS 623
Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
+ Y+ LS +Y G+ + +V + M++ K GCSW++ +++ FVV D M
Sbjct: 624 RESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTM 681
Score = 145 bits (367), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 175/338 (51%), Gaps = 8/338 (2%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFA-QNRLE--LKALQL-VREMPIHNEFP 56
MY K+ + +F + E+N +W+ MV+ +A + R+E +K L +RE ++
Sbjct: 162 MYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSD-- 219
Query: 57 NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
+ T VL + A ++ G++IH I+ GL + L+NAL MY+KC LN A +F
Sbjct: 220 SDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMF 279
Query: 117 NISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
+ S R+ ++++ ++ GYSQ + E++ LFS M G+K + +G ++AC+++ ++
Sbjct: 280 DSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLE 339
Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
+GK++H ++ HLF +++D Y ++G + A K FDCL +D A W +LI GY
Sbjct: 340 EGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYV 399
Query: 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295
+ + A+ L+ M+ G+ + + ++L ACS +E GK+
Sbjct: 400 QNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVP 459
Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
+ + + + G +ED + + P D W A++
Sbjct: 460 IGSALSTMYSKCGSLEDGNLVFRRTP-NKDVVSWNAMI 496
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 168/339 (49%), Gaps = 9/339 (2%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQN---RLELKALQLVREMPIHNEFPNS 58
YAK + A+A +F+ I K++VSWN+++ ++QN +QL REM + PN+
Sbjct: 59 YAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNA 118
Query: 59 VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
TL + A + G++ HA +++ D+++ +L MY K G + VF
Sbjct: 119 YTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAY 178
Query: 118 ISFRDEVSYNILIVGYSQTSDCSESL---SLFSEMRLLGMKHDVVSFMGAISACANLAAI 174
+ R+ +++ ++ GY+ E++ +LF + G D V F +S+ A +
Sbjct: 179 MPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYV-FTAVLSSLAATIYV 237
Query: 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY 234
G++IH +TI+ L + ++N+++ Y++ ++ A K+FD ++S +W+ ++ GY
Sbjct: 238 GLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGY 297
Query: 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294
GE A+ LF M G+ + + +L ACS +E+GK+ + +
Sbjct: 298 SQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHL 357
Query: 295 MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
+VD+ +AG + DA K L E D +W +L+
Sbjct: 358 FATTALVDMYAKAGCLADARKGFDCLQ-ERDVALWTSLI 395
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 185/412 (44%), Gaps = 57/412 (13%)
Query: 56 PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115
P++ TL L ++ L G+ +H +IIR G + + N L + YAKCG L A ++
Sbjct: 12 PHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSI 71
Query: 116 FN-ISFRDEVSYNILIVGYSQTSDCSES---LSLFSEMRLLGMKHDVVSFMGAISACANL 171
FN I +D VS+N LI GYSQ S S + LF EMR + + + G A ++L
Sbjct: 72 FNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSL 131
Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
+ G++ H + ++ ++V S++ Y ++G ++ K+F +P +++ +W+T++
Sbjct: 132 QSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMV 191
Query: 232 LGYGMLGEVDTAI---NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK--------- 279
GY G V+ AI NLF +E+G D V + A+L++ + V G+
Sbjct: 192 SGYATRGRVEEAIKVFNLFLREKEEGSDSDYV-FTAVLSSLAATIYVGLGRQIHCITIKN 250
Query: 280 --------------------------KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313
K FD S + ++ MV + G +A
Sbjct: 251 GLLGFVALSNALVTMYSKCESLNEACKMFD----SSGDRNSITWSAMVTGYSQNGESLEA 306
Query: 314 VKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQHCGYYILLS 367
VKL + ++P +L AC +E G H F+LK +H L
Sbjct: 307 VKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQL--HSFLLKLGFERHLFATTALV 364
Query: 368 NMYAEAGKWDEASKVRELMKSREAK--KNPGCSWVQTRDEVQDFVVNDRMKT 417
+MYA+AG +A K + ++ R+ + +VQ D + ++ RMKT
Sbjct: 365 DMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKT 416
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 275 bits (702), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 143/417 (34%), Positives = 237/417 (56%), Gaps = 3/417 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY K A +F + K++V+WN+M+ + ++++ M I P+ T
Sbjct: 252 MYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTT 311
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
LT++L AC+R L GK IH +IR +N D+++ +L D+Y KCG NLA+ VF+ +
Sbjct: 312 LTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQ 371
Query: 121 RDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
+D S+N++I Y + +++ ++ +M +G+K DVV+F + AC+ LAA+++GK+
Sbjct: 372 KDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQ 431
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
IH L T + +++LD Y++ G A +IF+ +P KD SW +I YG G+
Sbjct: 432 IHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQ 491
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
A+ F+ M++ G+ D V+ +A+L+AC H GL+++G K+F +M++ ++P HY+
Sbjct: 492 PREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYS 551
Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
CM+D+LGRAG + +A ++I+ P D A + L AC ++ LG A L P
Sbjct: 552 CMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYP 611
Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
Y++L N+YA WD A +VR MK +K PGCSW++ D+V F DR
Sbjct: 612 DDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFFAEDR 668
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 114/392 (29%), Positives = 197/392 (50%), Gaps = 5/392 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK + + +F + E+++ SWN +++ F Q+ KAL+L M PNSV+
Sbjct: 151 MYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVS 210
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
LT + AC+R +L GKEIH + ++KG D ++ +AL DMY KC CL +A+ VF
Sbjct: 211 LTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMP 270
Query: 121 RDE-VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
R V++N +I GY D + + + M + G + + + AC+ + GK
Sbjct: 271 RKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKF 330
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
IHG IR ++ ++V S++D Y + G +LA +F + SWN +I Y +G
Sbjct: 331 IHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGN 390
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
A+ +++ M GV D V++ ++L ACS +EKGK+ + ++ E+ +
Sbjct: 391 WFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSA 450
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL--FMLKP 357
++D+ + G ++A ++ ++P + D W ++ A +G + + + F LKP
Sbjct: 451 LLDMYSKCGNEKEAFRIFNSIP-KKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKP 509
Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389
+LS AG DE K M+S+
Sbjct: 510 DGVTLLAVLSAC-GHAGLIDEGLKFFSQMRSK 540
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 132/270 (48%), Gaps = 8/270 (2%)
Query: 58 SVTLTNVLPACARG-HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116
S L ++L C LR K +H RI+ GL D+ L +L ++Y C A++VF
Sbjct: 3 SSKLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVF 62
Query: 117 -NISFRDEVS-YNILIVGYSQTSDCSESLSLFSEMRLLGMK---HDVVSFMGAISACANL 171
N R +V +N L+ GYS+ S ++L +F RLL D +F I A L
Sbjct: 63 ENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFK--RLLNCSICVPDSFTFPNVIKAYGAL 120
Query: 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
G+ IH + ++ + VA+S++ Y + + + ++FD +P +D ASWNT+I
Sbjct: 121 GREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVI 180
Query: 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291
+ GE + A+ LF M G + VS ++ACS +E+GK+ + +
Sbjct: 181 SCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFE 240
Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321
E + +VD+ G+ +E A ++ + +P
Sbjct: 241 LDEYVNSALVDMYGKCDCLEVAREVFQKMP 270
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 273 bits (698), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 143/437 (32%), Positives = 250/437 (57%), Gaps = 34/437 (7%)
Query: 11 ASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
A +F I EK++VSWN+M+ F Q KAL+L ++M + + VT+ VL ACA+
Sbjct: 185 ACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAK 244
Query: 71 GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-------NISF--- 120
L G+++ + I +N +L L NA+ DMY KCG + A+ +F N+++
Sbjct: 245 IRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTM 304
Query: 121 ----------------------RDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-GMKHD 157
+D V++N LI Y Q +E+L +F E++L MK +
Sbjct: 305 LDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLN 364
Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
++ + +SACA + A++ G+ IH + + + V ++++ Y++ G ++ + ++F+
Sbjct: 365 QITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFN 424
Query: 218 CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277
+ +D W+ +I G M G + A+++F M+E V + V++ + ACSH GLV++
Sbjct: 425 SVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDE 484
Query: 278 GKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
+ F +M+++ + P E HYAC+VD+LGR+G +E AVK I+ +P+ P ++WGALLGAC
Sbjct: 485 AESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGAC 544
Query: 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPG 396
+I+ N+ L A L L+P++ G ++LLSN+YA+ GKW+ S++R+ M+ KK PG
Sbjct: 545 KIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPG 604
Query: 397 CSWVQTRDEVQDFVVND 413
CS ++ + +F+ D
Sbjct: 605 CSSIEIDGMIHEFLSGD 621
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 166/362 (45%), Gaps = 25/362 (6%)
Query: 49 MPIHNEF--PNSVTLTNV----LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDM 102
+P H F PN T N + R LR K+ H +IR G D + + L M
Sbjct: 12 LPRHPNFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAM 71
Query: 103 YA--KCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSES----LSLFSEMRLLGMK 155
A L A+ VF+ I + ++N LI Y+ D S L + SE + K
Sbjct: 72 AALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNK 131
Query: 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215
+ +F I A A ++++ G+ +HG+ ++ + + +FVANS++ Y G +D A K+
Sbjct: 132 Y---TFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKV 188
Query: 216 FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275
F + KD SWN++I G+ G D A+ LF+ M + V V+ + +L+AC+ +
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNL 248
Query: 276 EKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
E G++ ++ + V M+D+ + G +EDA +L + E D W +L
Sbjct: 249 EFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDG 307
Query: 336 CRIYGNVELGAWAAEHLFMLKPQH--CGYYILLSNMYAEAGKWDEASKV-RELMKSREAK 392
I + E AA + PQ + L+S Y + GK +EA V EL + K
Sbjct: 308 YAISEDYE----AAREVLNSMPQKDIVAWNALIS-AYEQNGKPNEALIVFHELQLQKNMK 362
Query: 393 KN 394
N
Sbjct: 363 LN 364
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 123/272 (45%), Gaps = 47/272 (17%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVS-------------------------------WNAM 29
MY K +A LF + EK+ V+ WNA+
Sbjct: 276 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNAL 335
Query: 30 VANFAQNRLELKALQLVREMPIHNEFP-NSVTLTNVLPACARGHFLRPGKEIHARIIRKG 88
++ + QN +AL + E+ + N +TL + L ACA+ L G+ IH+ I + G
Sbjct: 336 ISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHG 395
Query: 89 LNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
+ + +T+AL MY+KCG L ++ VFN + RD ++ +I G + +E++ +F
Sbjct: 396 IRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFY 455
Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEI-------HGVTIRKHLHTHLFVANSIL 200
+M+ +K + V+F AC++ + + + + +G+ + + I+
Sbjct: 456 KMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYA------CIV 509
Query: 201 DFYTRSGRIDLANKIFDCLPVKDSAS-WNTLI 231
D RSG ++ A K + +P+ S S W L+
Sbjct: 510 DVLGRSGYLEKAVKFIEAMPIPPSTSVWGALL 541
>sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580
OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2
Length = 660
Score = 272 bits (696), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 152/418 (36%), Positives = 236/418 (56%), Gaps = 4/418 (0%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
YAKS EA LF IAEK+++SW+ ++A + QN +AL + +M PN T+
Sbjct: 208 YAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATV 267
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
VL ACA H L G++ H IRKGL ++ ++ AL DMY KC A VF+ I
Sbjct: 268 LCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPR 327
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKE 179
+D VS+ LI G++ S+ FS M L + D + + + +C+ L ++Q K
Sbjct: 328 KDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKC 387
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
H I+ ++ F+ S+++ Y+R G + A+K+F+ + +KD+ W +LI GYG+ G+
Sbjct: 388 FHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGK 447
Query: 240 VDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
A+ F M + V + V++++IL+ACSH GL+ +G + F M D + P HY
Sbjct: 448 GTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHY 507
Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
A +VDLLGR G ++ A+++ K +P P I G LLGACRI+ N E+ A+ LF L+
Sbjct: 508 AVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELES 567
Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
H GYY+L+SN+Y G+W+ K+R +K R KK S ++ R +V FV +D +
Sbjct: 568 NHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVADDEL 625
Score = 164 bits (416), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 110/392 (28%), Positives = 199/392 (50%), Gaps = 8/392 (2%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSV 59
MY K R EA +F + + +IV+W++MV+ F +N +A++ R M + ++ P+ V
Sbjct: 105 MYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRV 164
Query: 60 TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
TL ++ AC + R G+ +H +IR+G + DL L N+L + YAK A N+F I
Sbjct: 165 TLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMI 224
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
+ +D +S++ +I Y Q +E+L +F++M G + +V + + + ACA ++QG+
Sbjct: 225 AEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGR 284
Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
+ H + IRK L T + V+ +++D Y + + A +F +P KD SW LI G+ + G
Sbjct: 285 KTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNG 344
Query: 239 EVDTAINLFEAM-REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297
+I F M E+ D + + +L +CS G +E+ K + +
Sbjct: 345 MAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIG 404
Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM--- 354
A +V+L R G + +A K+ + ++ D +W +L+ I+G H+
Sbjct: 405 ASLVELYSRCGSLGNASKVFNGIALK-DTVVWTSLITGYGIHGKGTKALETFNHMVKSSE 463
Query: 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
+KP + +LS + AG E ++ +LM
Sbjct: 464 VKPNEVTFLSILSAC-SHAGLIHEGLRIFKLM 494
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 160/340 (47%), Gaps = 4/340 (1%)
Query: 4 KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN 63
K S +A +F + ++++ WN ++ + ++ + + L M E P++ TL
Sbjct: 6 KFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPV 65
Query: 64 VLPACARGHFLRPGKEIHARIIRK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFR 121
L AC + G+ IH + + L DL++ ++L MY KCG + A +F+ +
Sbjct: 66 ALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKP 125
Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEI 180
D V+++ ++ G+ + +++ F M + + D V+ + +SAC L+ + G+ +
Sbjct: 126 DIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCV 185
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
HG IR+ L + NS+L+ Y +S A +F + KD SW+T+I Y G
Sbjct: 186 HGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAA 245
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
A+ +F M +DG + + + +L AC+ +E+G+K + ++ +
Sbjct: 246 AEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTAL 305
Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
VD+ + E+A + +P D W AL+ + G
Sbjct: 306 VDMYMKCFSPEEAYAVFSRIP-RKDVVSWVALISGFTLNG 344
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 272 bits (696), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 143/417 (34%), Positives = 235/417 (56%), Gaps = 37/417 (8%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY K +EA + ++ +++VSWN++V +AQN+ AL++ REM ++ T
Sbjct: 184 MYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGT 243
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD--MYAKCGCLNLAQNVFNI 118
+ ++LPA ++N T+ MY K F +
Sbjct: 244 MASLLPA---------------------------VSNTTTENVMYVK-------DMFFKM 269
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
+ VS+N++I Y + + E++ L+S M G + D VS + AC + +A+ GK
Sbjct: 270 GKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGK 329
Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
+IHG RK L +L + N+++D Y + G ++ A +F+ + +D SW +I YG G
Sbjct: 330 KIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSG 389
Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
A+ LF +++ G+ D ++++ L ACSH GL+E+G+ F M + P H
Sbjct: 390 RGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHL 449
Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
ACMVDLLGRAG +++A + I+++ +EP+ +WGALLGACR++ + ++G AA+ LF L P
Sbjct: 450 ACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAP 509
Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
+ GYY+LLSN+YA+AG+W+E + +R +MKS+ KKNPG S V+ + F+V DR
Sbjct: 510 EQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDR 566
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 150/324 (46%), Gaps = 11/324 (3%)
Query: 74 LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVG 132
+R + +H+RII + L + L L YA + A+ VF+ I R+ + N++I
Sbjct: 55 IRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRS 114
Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
Y E + +F M ++ D +F + AC+ I G++IHG + L +
Sbjct: 115 YVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSST 174
Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
LFV N ++ Y + G + A + D + +D SWN+L++GY D A+ + M
Sbjct: 175 LFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMES 234
Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312
+ +D + ++L A S+ + Y +M K + + + M+ + + + +
Sbjct: 235 VKISHDAGTMASLLPAVSN--TTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVE 292
Query: 313 AVKLIKNLPV---EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL---L 366
AV+L + EPDA ++L AC + LG H ++ + + +L L
Sbjct: 293 AVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKI--HGYIERKKLIPNLLLENAL 350
Query: 367 SNMYAEAGKWDEASKVRELMKSRE 390
+MYA+ G ++A V E MKSR+
Sbjct: 351 IDMYAKCGCLEKARDVFENMKSRD 374
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 272 bits (695), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 151/437 (34%), Positives = 242/437 (55%), Gaps = 24/437 (5%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY K AEA +F + ++ VSWNA++A QN + L L M P+ T
Sbjct: 426 MYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFT 485
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
++L AC G L G EIH+ I++ G+ + + +L DMY+KCG + A+ + + F
Sbjct: 486 FGSILKACTGGS-LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFF 544
Query: 121 RDE---------------------VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
+ VS+N +I GY ++ LF+ M +G+ D
Sbjct: 545 QRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKF 604
Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
++ + CANLA+ GK+IH I+K L + +++ ++++D Y++ G + + +F+
Sbjct: 605 TYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKS 664
Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279
+D +WN +I GY G+ + AI LFE M + + + V++I+IL AC+H GL++KG
Sbjct: 665 LRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGL 724
Query: 280 KYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
+YF M+ D + P HY+ MVD+LG++G ++ A++LI+ +P E D IW LLG C I
Sbjct: 725 EYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTI 784
Query: 339 Y-GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
+ NVE+ A L L PQ Y LLSN+YA+AG W++ S +R M+ + KK PGC
Sbjct: 785 HRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGC 844
Query: 398 SWVQTRDEVQDFVVNDR 414
SWV+ +DE+ F+V D+
Sbjct: 845 SWVELKDELHVFLVGDK 861
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 165/321 (51%), Gaps = 10/321 (3%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK R E+ +F I EKN VSW+A++A QN L AL+ +EM N +
Sbjct: 224 MYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSI 283
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
+VL +CA LR G ++HA ++ D + A DMYAKC + AQ +F+ S
Sbjct: 284 YASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSE 343
Query: 121 R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
+ SYN +I GYSQ ++L LF + G+ D +S G ACA + + +G +
Sbjct: 344 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 403
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
I+G+ I+ L + VAN+ +D Y + + A ++FD + +D+ SWN +I + G+
Sbjct: 404 IYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGK 463
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMH 296
+ LF +M + D ++ +IL AC+ G L Y E+ + VK +
Sbjct: 464 GYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSL-----GYGMEIHSSIVKSGMASNSS 518
Query: 297 YAC-MVDLLGRAGLMEDAVKL 316
C ++D+ + G++E+A K+
Sbjct: 519 VGCSLIDMYSKCGMIEEAEKI 539
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 156/335 (46%), Gaps = 2/335 (0%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
Y+KS+ +A+ F+ + +++VSWN+M++ + QN LK++++ +M + T
Sbjct: 124 YSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTF 183
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
+L C+ G +IH ++R G + D+ +AL DMYAK + VF I
Sbjct: 184 AIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPE 243
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
++ VS++ +I G Q + S +L F EM+ + + + +CA L+ ++ G ++
Sbjct: 244 KNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQL 303
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
H ++ V + LD Y + + A +FD + S+N +I GY
Sbjct: 304 HAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHG 363
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
A+ LF + G+G+D +S + AC+ + +G + + S+
Sbjct: 364 FKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAA 423
Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335
+D+ G+ + +A ++ + DA W A++ A
Sbjct: 424 IDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIAA 457
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 126/298 (42%), Gaps = 35/298 (11%)
Query: 57 NSVTLTN---VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMY---------- 103
NSV+ TN V CA+ L GK+ HA +I G F+ N L +Y
Sbjct: 44 NSVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSAS 103
Query: 104 ---------------------AKCGCLNLAQNVFNI-SFRDEVSYNILIVGYSQTSDCSE 141
+K + A + FN+ RD VS+N ++ GY Q + +
Sbjct: 104 MVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLK 163
Query: 142 SLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201
S+ +F +M G++ D +F + C+ L G +IHG+ +R T + A+++LD
Sbjct: 164 SIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLD 223
Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
Y + R + ++F +P K+S SW+ +I G + A+ F+ M++ G
Sbjct: 224 MYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSI 283
Query: 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319
Y ++L +C+ + G + + +D+ + M+DA L N
Sbjct: 284 YASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDN 341
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD 217
+F CA A++ GK+ H I FV N +L YT S A+ +FD
Sbjct: 48 TTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFD 107
Query: 218 CLPVKDSASWNTLILGY-------------------------GML------GEVDTAINL 246
+P++D SWN +I GY ML GE +I +
Sbjct: 108 KMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEV 167
Query: 247 FEAMREDGVGYDPVSYIAILTACS-----------HGGLVEKGKKYFDEMQADSVKPTEM 295
F M +G+ +D ++ IL CS HG +V G D V +
Sbjct: 168 FVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVG------CDTDVVAAS-- 219
Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336
++D+ + +++++ + +P E ++ W A++ C
Sbjct: 220 ---ALLDMYAKGKRFVESLRVFQGIP-EKNSVSWSAIIAGC 256
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 271 bits (693), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 138/413 (33%), Positives = 240/413 (58%), Gaps = 2/413 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
+Y + ++A +F+ + + ++V W+ M+A F QN +A+ L M PN T
Sbjct: 291 LYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFT 350
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
L+++L CA G G+++H +++ G + D++++NAL D+YAKC ++ A +F +S
Sbjct: 351 LSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELS 410
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
++EVS+N +IVGY + ++ S+F E + V+F A+ ACA+LA++ G +
Sbjct: 411 SKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQ 470
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
+HG+ I+ + + V+NS++D Y + G I A +F+ + D ASWN LI GY G
Sbjct: 471 VHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGL 530
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
A+ + + M++ + ++++ +L+ CS+ GL+++G++ F+ M D ++P HY
Sbjct: 531 GRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYT 590
Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
CMV LLGR+G ++ A+KLI+ +P EP IW A+L A N E +AE + + P+
Sbjct: 591 CMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPK 650
Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
Y+L+SNMYA A +W + +R+ MK KK PG SW++ + +V F V
Sbjct: 651 DEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSV 703
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 151/334 (45%), Gaps = 8/334 (2%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFA-QNRLELKALQLVREMPIHNEFPNSVT 60
Y K+ +A LF + E+N VS+ + +A Q+ + L + +L RE H P+ T
Sbjct: 94 YVKAGFDKDALNLFDEMPERNNVSFVTLAQGYACQDPIGLYS-RLHREG--HELNPHVFT 150
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
L + P +H+ I++ G + + F+ AL + Y+ CG ++ A+ VF I
Sbjct: 151 SFLKLFVSLDKAEICPW--LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGIL 208
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
+D V + ++ Y + +SL L S MR+ G + +F A+ A L A K
Sbjct: 209 CKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKG 268
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
+HG ++ V +L YT+ G + A K+F+ +P D W+ +I + G
Sbjct: 269 VHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGF 328
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
+ A++LF MRE V + + +IL C+ G G++ +
Sbjct: 329 CNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNA 388
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
++D+ + M+ AVKL L + + + W ++
Sbjct: 389 LIDVYAKCEKMDTAVKLFAELSSKNEVS-WNTVI 421
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 5/246 (2%)
Query: 77 GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQ 135
K IH I++KG DLF TN L + Y K G A N+F+ + R+ VS+ L GY+
Sbjct: 68 AKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYA- 126
Query: 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
C + + L+S + G + + F + +L + +H ++ ++ FV
Sbjct: 127 ---CQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFV 183
Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
++++ Y+ G +D A +F+ + KD W ++ Y G + ++ L MR G
Sbjct: 184 GAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGF 243
Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
+ ++ L A G + K ++ ++ L + G M DA K
Sbjct: 244 MPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFK 303
Query: 316 LIKNLP 321
+ +P
Sbjct: 304 VFNEMP 309
>sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protein At1g71490
OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1
Length = 681
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 149/422 (35%), Positives = 233/422 (55%), Gaps = 13/422 (3%)
Query: 2 YAKSSRPAEASYLFHNI----AEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
YA +EA LF + E ++++WN + Q + AL L+ M FP
Sbjct: 220 YASEGMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRM---RNFPT 276
Query: 58 S---VTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQN 114
S V + L AC+ +R GKEIH I + + N L MY+KC L A
Sbjct: 277 SLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALI 336
Query: 115 VFNISFRDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
VF + + + ++N +I GY+Q + E+ L EM + G + + ++ + CA +A
Sbjct: 337 VFRQTEENSLCTWNSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIAN 396
Query: 174 IKQGKEIHGVTIR-KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLIL 232
++ GKE H +R K + + NS++D Y +SG+I A ++ D + +D ++ +LI
Sbjct: 397 LQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLID 456
Query: 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVK 291
GYG GE A+ LF+ M G+ D V+ +A+L+ACSH LV +G++ F +MQ + ++
Sbjct: 457 GYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVLSACSHSKLVHEGERLFMKMQCEYGIR 516
Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351
P H++CMVDL GRAG + A +I N+P +P W LL AC I+GN ++G WAAE
Sbjct: 517 PCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKPSGATWATLLNACHIHGNTQIGKWAAEK 576
Query: 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVV 411
L +KP++ GYY+L++NMYA AG W + ++VR +M+ KK+PGC+W+ T F V
Sbjct: 577 LLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSV 636
Query: 412 ND 413
D
Sbjct: 637 GD 638
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 129/235 (54%), Gaps = 4/235 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY+K A +F E ++ +WN++++ +AQ +A L+REM + PNS+T
Sbjct: 324 MYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEEASHLLREMLVAGFQPNSIT 383
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFD-LFLTNALTDMYAKCGCLNLAQNVFNI- 118
L ++LP CAR L+ GKE H I+R+ D L N+L D+YAK G + A+ V ++
Sbjct: 384 LASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSDLM 443
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
S RDEV+Y LI GY + +L+LF EM G+K D V+ + +SAC++ + +G+
Sbjct: 444 SKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVLSACSHSKLVHEGE 503
Query: 179 EIH-GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS-ASWNTLI 231
+ + + L + ++D Y R+G + A I +P K S A+W TL+
Sbjct: 504 RLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKPSGATWATLL 558
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 98/401 (24%), Positives = 176/401 (43%), Gaps = 48/401 (11%)
Query: 10 EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
EA + N + + WN ++A++A+N L + + + M P++ T +VL AC
Sbjct: 96 EAQSIIENSDILHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACG 155
Query: 70 RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF-RDEVSYNI 128
+ G+ +H I L++ NAL MY + + +A+ +F+ F RD VS+N
Sbjct: 156 ETLDVAFGRVVHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNA 215
Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF----------------MGAIS------ 166
+I Y+ SE+ LF +M G++ V+++ +G IS
Sbjct: 216 VINCYASEGMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRNFP 275
Query: 167 -------------ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213
AC+ + AI+ GKEIHG+ I V N+++ Y++ + A
Sbjct: 276 TSLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHAL 335
Query: 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273
+F +WN++I GY L + + A +L M G + ++ +IL C+
Sbjct: 336 IVFRQTEENSLCTWNSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIA 395
Query: 274 LVEKGKKYFDE-MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332
++ GK++ ++ K M + +VD+ ++G + A K + +L + D + +L
Sbjct: 396 NLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIV-AAKQVSDLMSKRDEVTYTSL 454
Query: 333 LGACRIYGNVELGAWAAEHLFM------LKPQHCGYYILLS 367
+ YGN G A LF +KP H +LS
Sbjct: 455 IDG---YGNQGEGG-VALALFKEMTRSGIKPDHVTVVAVLS 491
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/404 (22%), Positives = 165/404 (40%), Gaps = 80/404 (19%)
Query: 63 NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFR 121
++L AC G ++HA I G+ + L L Y+ N AQ++ N
Sbjct: 48 SLLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDIL 107
Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181
+ +N+LI Y++ E ++ + M G++ D ++ + AC + G+ +H
Sbjct: 108 HPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVH 167
Query: 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVD 241
G + L+V N+++ Y R + +A ++FD + +D+ SWN +I Y G
Sbjct: 168 GSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWS 227
Query: 242 TAINLFEAMREDGV-----------------------------------GYDPVSYIAIL 266
A LF+ M GV DPV+ I L
Sbjct: 228 EAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGL 287
Query: 267 TACSHGGLVEKGKKY--------FDEMQADSVKPT---------EMHYACMV-------- 301
ACS G + GK+ +D + D+V+ T ++ +A +V
Sbjct: 288 KACSLIGAIRLGKEIHGLAIHSSYDGI--DNVRNTLITMYSKCKDLRHALIVFRQTEENS 345
Query: 302 ------DLLGRAGL--MEDAVKLIKNLPV---EPDANIWGALLGACRIYGNVELGAWAAE 350
+ G A L E+A L++ + V +P++ ++L C N++ G
Sbjct: 346 LCTWNSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHG--KEF 403
Query: 351 HLFMLKPQHCGYYILLSN----MYAEAGKWDEASKVRELMKSRE 390
H ++L+ + Y +L N +YA++GK A +V +LM R+
Sbjct: 404 HCYILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSDLMSKRD 447
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 6/198 (3%)
Query: 141 ESLSLFSEMRLL---GMKHDVV--SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFV 195
++ FS +RL + D+V S +SAC ++ A G ++H I + H +
Sbjct: 21 DAFKTFSLLRLQSSSAVSDDLVLHSAASLLSACVDVRAFLAGVQVHAHCISSGVEYHSVL 80
Query: 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV 255
++ FY+ + A I + + WN LI Y + I ++ M G+
Sbjct: 81 VPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGI 140
Query: 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
D +Y ++L AC V G+ ++ S K + ++ + R M A +
Sbjct: 141 RPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARR 200
Query: 316 LIKNLPVEPDANIWGALL 333
L + E DA W A++
Sbjct: 201 LFDRM-FERDAVSWNAVI 217
>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570
OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
Length = 611
Score = 270 bits (691), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 143/420 (34%), Positives = 250/420 (59%), Gaps = 6/420 (1%)
Query: 1 MYAKSSRPAEASYL-FHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV 59
MYA S EA+ L F +I KN V+W ++ F + L++ ++M + N
Sbjct: 155 MYATCSVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPY 214
Query: 60 TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-I 118
+T + A A + GK+IHA +I++G +L + N++ D+Y +CG L+ A++ F+ +
Sbjct: 215 CITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEM 274
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178
+D +++N LI + SD SE+L +F G + +F ++ACAN+AA+ G+
Sbjct: 275 EDKDLITWNTLISEL-ERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQ 333
Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF-DCLPVKDSASWNTLILGYGML 237
++HG R+ + ++ +AN+++D Y + G I + ++F + + ++ SW ++++GYG
Sbjct: 334 QLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSH 393
Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
G A+ LF+ M G+ D + ++A+L+AC H GLVEKG KYF+ M+++ + P
Sbjct: 394 GYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDI 453
Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG-NVELGAWAAEHLFML 355
Y C+VDLLGRAG + +A +L++ +P +PD + WGA+LGAC+ + N + AA + L
Sbjct: 454 YNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKAHKHNGLISRLAARKVMEL 513
Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
KP+ G Y++LS +YA GKW + ++VR++M+ KK G SW+ ++V F V+D+M
Sbjct: 514 KPKMVGTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKKEAGMSWILVENQVFSFAVSDKM 573
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/419 (25%), Positives = 192/419 (45%), Gaps = 46/419 (10%)
Query: 10 EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
EA LF + ++++V+W AM+ +A + +A + EM PN TL++VL +C
Sbjct: 63 EARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCR 122
Query: 70 RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG-CLNLAQNVF-NISFRDEVSYN 127
L G +H +++ G+ L++ NA+ +MYA C + A +F +I +++V++
Sbjct: 123 NMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWT 182
Query: 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187
LI G++ D L ++ +M L + A+ A A++ ++ GK+IH I++
Sbjct: 183 TLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKR 242
Query: 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF 247
++L V NSILD Y R G + A F + KD +WNTLI L D++ L
Sbjct: 243 GFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLI---SELERSDSSEALL 299
Query: 248 EAMREDGVGYDP--VSYIAILTACS-----------HGGLVEKGKKYFDEM--------- 285
R + G+ P ++ +++ AC+ HG + +G E+
Sbjct: 300 MFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYA 359
Query: 286 QADSVKPTEMHYACMVDL------------LGRAGLMEDAVKLIKNL---PVEPDANIWG 330
+ ++ ++ + +VD G G +AV+L + + PD ++
Sbjct: 360 KCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFM 419
Query: 331 ALLGACRIYGNVELGAW---AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386
A+L ACR G VE G E + + P Y + ++ AGK EA ++ E M
Sbjct: 420 AVLSACRHAGLVEKGLKYFNVMESEYGINPDR-DIYNCVVDLLGRAGKIGEAYELVERM 477
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 32/162 (19%)
Query: 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245
+KH H+ N I+ ++ + G ++ A +FD +P +D +W +I GY A
Sbjct: 42 KKH---HILATNLIVSYFEK-GLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWE 97
Query: 246 LFEAMREDGVGYDPVSYIAILTAC------SHGGLVE--------KGKKYFDEMQADSVK 291
F M + G + + ++L +C ++G LV +G Y D +
Sbjct: 98 CFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMN--- 154
Query: 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALL 333
M+ C V ME A + +++ V+ D W L+
Sbjct: 155 ---MYATCSVT-------MEAACLIFRDIKVKNDVT-WTTLI 185
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 270 bits (691), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 145/446 (32%), Positives = 240/446 (53%), Gaps = 34/446 (7%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
Y KS A +F ++ E+++VSWN MV +AQ+ +AL +E N +
Sbjct: 123 YVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSF 182
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN---- 117
+L AC + L+ ++ H +++ G ++ L+ ++ D YAKCG + A+ F+
Sbjct: 183 AGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTV 242
Query: 118 ----------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149
+ ++ VS+ LI GY + + +L LF +M
Sbjct: 243 KDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKM 302
Query: 150 RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209
LG+K + +F + A A++A+++ GKEIHG IR ++ + V +S++D Y++SG +
Sbjct: 303 IALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSL 362
Query: 210 DLANKIFD-CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268
+ + ++F C D WNT+I G A+ + + M + V + + + IL A
Sbjct: 363 EASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNA 422
Query: 269 CSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
CSH GLVE+G ++F+ M + P + HYAC++DLLGRAG ++ ++ I+ +P EPD +
Sbjct: 423 CSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKH 482
Query: 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387
IW A+LG CRI+GN ELG AA+ L L P+ YILLS++YA+ GKW+ K+R +MK
Sbjct: 483 IWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMK 542
Query: 388 SREAKKNPGCSWVQTRDEVQDFVVND 413
R K SW++ +V+ F V+D
Sbjct: 543 KRRVNKEKAVSWIEIEKKVEAFTVSD 568
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 171/375 (45%), Gaps = 59/375 (15%)
Query: 56 PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQN 114
PN++ +++ G +++ GK I A + ++ +L+ N + Y K G L A+
Sbjct: 80 PNTLLSNHLI-----GMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARV 134
Query: 115 VFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173
VF+ + RD VS+N +++GY+Q + E+L + E R G+K + SF G ++AC
Sbjct: 135 VFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQ 194
Query: 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILG 233
++ ++ HG + +++ ++ SI+D Y + G+++ A + FD + VKD W TLI G
Sbjct: 195 LQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISG 254
Query: 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293
Y LG+++ A LF M E +PVS+ A++ G + F +M A VKP
Sbjct: 255 YAKLGDMEAAEKLFCEMPEK----NPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPE 310
Query: 294 EMHY-----------------------------------ACMVDLLGRAGLMEDAVKLIK 318
+ + + ++D+ ++G +E + ++ +
Sbjct: 311 QFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFR 370
Query: 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHL-----FMLKPQHCGYYILL-----SN 368
+ D W ++ A +G LG A L F ++P ++L S
Sbjct: 371 ICDDKHDCVFWNTMISALAQHG---LGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSG 427
Query: 369 MYAEAGKWDEASKVR 383
+ E +W E+ V+
Sbjct: 428 LVEEGLRWFESMTVQ 442
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 109/258 (42%), Gaps = 37/258 (14%)
Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHG-VTIRKHLHT 191
++ ++ S+++S + G++ + C + ++KQGK IH + I
Sbjct: 21 HATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRP 80
Query: 192 HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGY---GML----------- 237
+ ++N ++ Y + G+ A K+FD + +++ SWN ++ GY GML
Sbjct: 81 NTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMP 140
Query: 238 -----------------GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280
G + A+ ++ R G+ ++ S+ +LTAC ++ ++
Sbjct: 141 ERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQ 200
Query: 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340
++ + ++D + G ME A + + V+ D +IW L+ G
Sbjct: 201 AHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVK-DIHIWTTLISGYAKLG 259
Query: 341 NVELGAWAAEHLFMLKPQ 358
++E AAE LF P+
Sbjct: 260 DME----AAEKLFCEMPE 273
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 270 bits (691), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/454 (33%), Positives = 250/454 (55%), Gaps = 52/454 (11%)
Query: 11 ASYLFHNIAEKNIVSWNAMVANFAQNRLE--LKALQLVREMPIHNEF--PNSVTLTNVLP 66
A +F+ + ++N SWN ++ F+++ + L A+ L EM + +EF PN T +VL
Sbjct: 78 AHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEM-MSDEFVEPNRFTFPSVLK 136
Query: 67 ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF--NISFRDEV 124
ACA+ ++ GK+IH ++ G D F+ + L MY CG + A+ +F NI +D V
Sbjct: 137 ACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMV 196
Query: 125 S-------------YNILIVGYSQTSDCS------------------------------- 140
+N++I GY + DC
Sbjct: 197 VMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFK 256
Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
+++ +F EM+ ++ + V+ + + A + L +++ G+ +H + + ++++
Sbjct: 257 DAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALI 316
Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
D Y++ G I+ A +F+ LP ++ +W+ +I G+ + G+ AI+ F MR+ GV V
Sbjct: 317 DMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDV 376
Query: 261 SYIAILTACSHGGLVEKGKKYFDEM-QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319
+YI +LTACSHGGLVE+G++YF +M D ++P HY CMVDLLGR+GL+++A + I N
Sbjct: 377 AYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILN 436
Query: 320 LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA 379
+P++PD IW ALLGACR+ GNVE+G A L + P G Y+ LSNMYA G W E
Sbjct: 437 MPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEV 496
Query: 380 SKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
S++R MK ++ +K+PGCS + + +FVV D
Sbjct: 497 SEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVED 530
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 7/163 (4%)
Query: 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG----RIDLANKIFDCLPVKDSA 225
N I+ +IH V I+ A IL F S +D A+KIF+ +P ++
Sbjct: 32 NCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCF 91
Query: 226 SWNTLILGYGMLGEVDT--AINLF-EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282
SWNT+I G+ E AI LF E M ++ V + ++ ++L AC+ G +++GK+
Sbjct: 92 SWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIH 151
Query: 283 DEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD 325
E + +V + G M+DA L +E D
Sbjct: 152 GLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY+K +A ++F + +N+++W+AM+ FA + A+ +M P+ V
Sbjct: 318 MYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 377
Query: 61 LTNVLPACARGHFLRPGKEIHARIIR-KGLNFDLFLTNALTDMYAKCGCLNLAQN-VFNI 118
N+L AC+ G + G+ ++++ GL + + D+ + G L+ A+ + N+
Sbjct: 378 YINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNM 437
Query: 119 SFR-DEVSYNILI 130
+ D+V + L+
Sbjct: 438 PIKPDDVIWKALL 450
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,186,969
Number of Sequences: 539616
Number of extensions: 6296209
Number of successful extensions: 19247
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 12917
Number of HSP's gapped (non-prelim): 2136
length of query: 423
length of database: 191,569,459
effective HSP length: 120
effective length of query: 303
effective length of database: 126,815,539
effective search space: 38425108317
effective search space used: 38425108317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)