Query 038550
Match_columns 423
No_of_seqs 596 out of 1950
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 12:12:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.9E-71 4.2E-76 534.8 43.4 421 1-421 167-589 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 3.8E-68 8.2E-73 523.6 44.0 419 1-421 332-752 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.7E-61 3.7E-66 469.0 43.5 395 2-396 416-848 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 3.6E-61 7.7E-66 466.8 42.5 391 2-396 380-790 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 3.4E-61 7.4E-66 474.4 41.9 392 1-395 231-625 (857)
6 PLN03081 pentatricopeptide (PP 100.0 5.3E-57 1.2E-61 434.7 41.0 374 21-395 85-462 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.5E-28 7.7E-33 244.8 40.3 382 2-391 475-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.5E-27 7.6E-32 237.6 40.6 380 2-389 441-832 (899)
9 PRK11788 tetratricopeptide rep 99.9 5.9E-23 1.3E-27 186.4 29.5 318 65-413 42-371 (389)
10 TIGR00990 3a0801s09 mitochondr 99.9 7.7E-22 1.7E-26 188.3 38.2 252 136-390 307-572 (615)
11 PRK11447 cellulose synthase su 99.9 5.5E-21 1.2E-25 194.0 42.2 383 2-393 279-745 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 3.3E-22 7.2E-27 174.9 27.3 359 23-390 116-486 (966)
13 PRK15174 Vi polysaccharide exp 99.9 6.7E-21 1.5E-25 181.4 37.3 350 5-360 18-386 (656)
14 KOG4626 O-linked N-acetylgluco 99.9 3.6E-22 7.8E-27 174.7 24.9 362 4-376 128-506 (966)
15 PRK11788 tetratricopeptide rep 99.9 6.7E-21 1.5E-25 173.0 31.2 292 28-354 40-346 (389)
16 PRK15174 Vi polysaccharide exp 99.9 7.4E-20 1.6E-24 174.3 37.7 353 33-391 15-383 (656)
17 PRK11447 cellulose synthase su 99.9 1.1E-19 2.3E-24 184.7 40.9 318 68-389 279-700 (1157)
18 PRK10049 pgaA outer membrane p 99.9 9.9E-20 2.1E-24 177.0 36.5 382 3-390 26-457 (765)
19 TIGR00990 3a0801s09 mitochondr 99.9 3.1E-18 6.7E-23 163.7 36.7 365 25-400 129-546 (615)
20 PRK14574 hmsH outer membrane p 99.9 7.7E-18 1.7E-22 161.1 38.9 386 2-390 44-514 (822)
21 PRK10049 pgaA outer membrane p 99.9 4.8E-18 1E-22 165.4 33.9 364 22-395 14-426 (765)
22 PRK09782 bacteriophage N4 rece 99.8 2.2E-15 4.8E-20 147.4 40.5 375 9-390 233-707 (987)
23 PRK09782 bacteriophage N4 rece 99.8 1.5E-15 3.4E-20 148.5 36.1 376 3-391 324-742 (987)
24 PRK14574 hmsH outer membrane p 99.8 8.7E-15 1.9E-19 140.4 39.3 354 30-389 41-479 (822)
25 KOG4422 Uncharacterized conser 99.8 3E-15 6.4E-20 126.3 31.1 347 13-390 198-591 (625)
26 KOG2076 RNA polymerase III tra 99.8 5.7E-15 1.2E-19 135.5 30.5 317 68-387 149-510 (895)
27 KOG2002 TPR-containing nuclear 99.7 3.1E-15 6.8E-20 138.2 27.7 378 5-387 283-743 (1018)
28 KOG4422 Uncharacterized conser 99.7 3.8E-15 8.3E-20 125.6 25.2 352 23-422 116-490 (625)
29 KOG2003 TPR repeat-containing 99.7 2.8E-15 6.2E-20 127.4 24.3 369 2-376 247-710 (840)
30 PF13429 TPR_15: Tetratricopep 99.7 1.5E-17 3.1E-22 143.4 10.9 257 129-388 14-276 (280)
31 KOG0547 Translocase of outer m 99.7 8.2E-14 1.8E-18 119.6 26.2 216 169-388 337-565 (606)
32 KOG1915 Cell cycle control pro 99.7 1.3E-12 2.9E-17 111.9 32.8 383 5-395 86-506 (677)
33 PRK10747 putative protoheme IX 99.7 6.3E-13 1.4E-17 119.9 32.8 246 134-388 129-389 (398)
34 KOG0495 HAT repeat protein [RN 99.7 4.1E-12 8.9E-17 113.1 35.6 371 25-406 518-895 (913)
35 PRK10747 putative protoheme IX 99.7 1.9E-13 4.1E-18 123.2 28.0 278 71-356 97-391 (398)
36 COG2956 Predicted N-acetylgluc 99.7 9E-13 1.9E-17 107.6 28.6 312 72-414 49-372 (389)
37 KOG0495 HAT repeat protein [RN 99.7 1.7E-12 3.6E-17 115.6 32.4 392 2-400 416-855 (913)
38 TIGR00540 hemY_coli hemY prote 99.6 6.8E-13 1.5E-17 120.3 28.9 280 69-354 95-398 (409)
39 TIGR00540 hemY_coli hemY prote 99.6 2.6E-12 5.6E-17 116.5 31.9 280 103-388 94-398 (409)
40 KOG1155 Anaphase-promoting com 99.6 3.6E-12 7.8E-17 109.0 30.0 257 130-389 234-495 (559)
41 KOG1126 DNA-binding cell divis 99.6 1.2E-13 2.6E-18 123.2 21.6 281 108-394 334-625 (638)
42 KOG2002 TPR-containing nuclear 99.6 6.7E-12 1.4E-16 116.7 33.3 375 8-387 146-557 (1018)
43 PF13429 TPR_15: Tetratricopep 99.6 3E-15 6.6E-20 129.0 10.9 249 99-354 14-276 (280)
44 KOG2076 RNA polymerase III tra 99.6 4.3E-12 9.3E-17 117.0 31.2 355 33-389 149-555 (895)
45 KOG1126 DNA-binding cell divis 99.6 5.2E-13 1.1E-17 119.2 20.7 256 138-400 334-595 (638)
46 COG3071 HemY Uncharacterized e 99.6 1.8E-11 4E-16 103.0 28.7 282 36-354 97-389 (400)
47 KOG2003 TPR repeat-containing 99.6 1.2E-11 2.6E-16 105.7 26.6 360 29-390 207-690 (840)
48 KOG4318 Bicoid mRNA stability 99.5 3.9E-12 8.5E-17 116.9 23.7 251 44-309 11-286 (1088)
49 KOG1915 Cell cycle control pro 99.5 1.2E-10 2.6E-15 100.2 30.9 357 5-368 154-548 (677)
50 COG3071 HemY Uncharacterized e 99.5 3.2E-11 6.9E-16 101.6 27.0 284 105-395 96-396 (400)
51 KOG1155 Anaphase-promoting com 99.5 2E-11 4.4E-16 104.6 25.8 291 89-391 160-463 (559)
52 COG2956 Predicted N-acetylgluc 99.5 3.3E-11 7.1E-16 98.7 24.8 218 34-253 46-278 (389)
53 TIGR02521 type_IV_pilW type IV 99.5 2.1E-11 4.5E-16 102.4 22.6 194 194-388 32-231 (234)
54 KOG0547 Translocase of outer m 99.5 1.9E-10 4.1E-15 99.4 26.9 337 25-389 117-491 (606)
55 KOG1173 Anaphase-promoting com 99.4 1.8E-10 3.9E-15 101.3 25.4 270 120-395 241-522 (611)
56 KOG1840 Kinesin light chain [C 99.4 8.8E-11 1.9E-15 105.9 24.1 232 157-388 198-478 (508)
57 PRK12370 invasion protein regu 99.4 2E-10 4.4E-15 108.3 26.2 260 122-390 255-536 (553)
58 PRK12370 invasion protein regu 99.4 2.7E-10 5.8E-15 107.5 24.8 255 56-320 254-532 (553)
59 PF13041 PPR_2: PPR repeat fam 99.4 1E-12 2.2E-17 79.9 5.3 50 21-70 1-50 (50)
60 KOG4162 Predicted calmodulin-b 99.4 6.5E-09 1.4E-13 95.0 31.6 377 22-402 322-795 (799)
61 PF13041 PPR_2: PPR repeat fam 99.4 2.3E-12 4.9E-17 78.3 6.7 50 222-271 1-50 (50)
62 TIGR02521 type_IV_pilW type IV 99.4 3.4E-10 7.3E-15 95.0 22.0 192 95-319 33-228 (234)
63 KOG1129 TPR repeat-containing 99.4 5.1E-11 1.1E-15 97.7 15.7 226 161-390 226-459 (478)
64 KOG1129 TPR repeat-containing 99.3 8.9E-11 1.9E-15 96.3 16.5 230 127-360 227-463 (478)
65 KOG1174 Anaphase-promoting com 99.3 1.1E-08 2.3E-13 87.0 28.9 266 91-361 230-506 (564)
66 KOG1156 N-terminal acetyltrans 99.3 3.1E-08 6.8E-13 88.9 32.8 101 291-391 366-470 (700)
67 PF12569 NARP1: NMDA receptor- 99.3 1E-08 2.2E-13 93.8 30.3 279 3-286 15-332 (517)
68 KOG4318 Bicoid mRNA stability 99.3 4.8E-10 1E-14 103.6 21.4 363 20-393 22-598 (1088)
69 KOG1174 Anaphase-promoting com 99.3 5.4E-08 1.2E-12 82.8 30.3 280 105-390 208-501 (564)
70 PF12569 NARP1: NMDA receptor- 99.3 1.4E-08 3.1E-13 92.9 28.9 285 30-320 11-331 (517)
71 PRK11189 lipoprotein NlpI; Pro 99.3 1.2E-09 2.7E-14 94.4 20.8 228 134-368 37-279 (296)
72 COG3063 PilF Tfp pilus assembl 99.3 4.8E-10 1E-14 87.7 16.1 173 226-401 37-213 (250)
73 KOG1173 Anaphase-promoting com 99.3 5.9E-09 1.3E-13 92.0 24.5 278 54-337 240-533 (611)
74 KOG1840 Kinesin light chain [C 99.3 4.7E-09 1E-13 94.9 23.6 237 93-354 199-478 (508)
75 KOG4162 Predicted calmodulin-b 99.2 1.2E-07 2.7E-12 86.9 29.2 358 2-361 333-789 (799)
76 KOG3785 Uncharacterized conser 99.2 1.5E-07 3.2E-12 78.7 26.8 380 4-394 34-495 (557)
77 PRK11189 lipoprotein NlpI; Pro 99.2 1.3E-08 2.8E-13 88.1 21.7 222 72-299 40-275 (296)
78 KOG4340 Uncharacterized conser 99.2 3.9E-08 8.5E-13 80.1 22.3 374 3-388 21-442 (459)
79 COG3063 PilF Tfp pilus assembl 99.2 2.5E-08 5.5E-13 78.3 20.5 195 166-362 43-243 (250)
80 KOG1156 N-terminal acetyltrans 99.2 2E-07 4.4E-12 83.9 28.6 350 34-391 52-436 (700)
81 KOG4340 Uncharacterized conser 99.1 2E-08 4.3E-13 81.8 19.8 284 96-385 13-335 (459)
82 KOG2376 Signal recognition par 99.1 5.8E-07 1.3E-11 80.2 30.4 145 239-386 356-517 (652)
83 KOG0624 dsRNA-activated protei 99.1 1.3E-07 2.9E-12 78.6 23.9 287 99-390 44-371 (504)
84 PF04733 Coatomer_E: Coatomer 99.1 3.5E-09 7.6E-14 90.3 15.4 151 202-358 111-268 (290)
85 KOG0548 Molecular co-chaperone 99.1 1.1E-07 2.3E-12 83.8 23.6 368 3-389 13-455 (539)
86 cd05804 StaR_like StaR_like; a 99.1 5.9E-07 1.3E-11 80.7 29.5 193 198-390 119-337 (355)
87 KOG2047 mRNA splicing factor [ 99.1 2.4E-06 5.2E-11 77.1 31.9 175 225-400 388-589 (835)
88 PF04733 Coatomer_E: Coatomer 99.1 2.4E-08 5.2E-13 85.2 18.4 146 234-388 112-264 (290)
89 KOG1125 TPR repeat-containing 99.1 1E-08 2.3E-13 90.8 16.1 219 167-388 294-526 (579)
90 KOG2376 Signal recognition par 99.0 3.8E-06 8.2E-11 75.2 31.5 353 31-390 20-488 (652)
91 KOG3785 Uncharacterized conser 99.0 6.9E-07 1.5E-11 74.8 25.3 351 30-386 29-454 (557)
92 cd05804 StaR_like StaR_like; a 99.0 2.7E-06 5.9E-11 76.4 29.7 56 300-355 270-336 (355)
93 KOG3617 WD40 and TPR repeat-co 99.0 3.5E-07 7.6E-12 84.6 23.4 350 2-384 738-1169(1416)
94 PRK04841 transcriptional regul 99.0 2.1E-06 4.6E-11 87.1 32.2 323 68-390 384-761 (903)
95 KOG2047 mRNA splicing factor [ 99.0 1.6E-05 3.4E-10 72.1 32.7 215 172-387 361-613 (835)
96 PRK10370 formate-dependent nit 99.0 1.2E-07 2.7E-12 76.3 17.7 119 272-391 52-175 (198)
97 PRK04841 transcriptional regul 98.9 2.9E-06 6.3E-11 86.1 31.3 356 3-358 352-763 (903)
98 KOG0624 dsRNA-activated protei 98.9 3.1E-06 6.8E-11 70.7 24.7 312 23-362 38-377 (504)
99 KOG3617 WD40 and TPR repeat-co 98.9 1.4E-06 3.1E-11 80.7 23.8 336 22-387 725-1107(1416)
100 TIGR03302 OM_YfiO outer membra 98.9 3.1E-07 6.8E-12 77.1 18.1 181 193-390 33-233 (235)
101 KOG0548 Molecular co-chaperone 98.8 6.7E-06 1.4E-10 72.9 24.8 336 31-389 10-421 (539)
102 PRK15359 type III secretion sy 98.8 2.8E-07 6.1E-12 70.2 14.6 104 264-368 29-134 (144)
103 COG5010 TadD Flp pilus assembl 98.8 8.7E-07 1.9E-11 71.3 17.5 156 228-385 70-227 (257)
104 KOG3616 Selective LIM binding 98.8 5.3E-06 1.2E-10 76.2 24.4 111 200-321 739-851 (1636)
105 PLN02789 farnesyltranstransfer 98.8 9.4E-06 2E-10 70.4 24.7 227 126-386 40-299 (320)
106 KOG0985 Vesicle coat protein c 98.8 1.8E-05 3.9E-10 75.4 27.5 320 21-372 982-1325(1666)
107 KOG3616 Selective LIM binding 98.8 4.3E-06 9.2E-11 76.8 22.8 166 166-349 740-905 (1636)
108 KOG1070 rRNA processing protei 98.8 1.1E-06 2.4E-11 85.8 19.6 198 158-356 1458-1664(1710)
109 PRK15359 type III secretion sy 98.8 1.7E-07 3.8E-12 71.4 11.4 108 279-390 13-122 (144)
110 KOG1125 TPR repeat-containing 98.7 1.5E-06 3.3E-11 77.5 18.4 254 103-383 295-565 (579)
111 PRK10370 formate-dependent nit 98.7 2.3E-06 5.1E-11 69.0 18.0 155 200-364 23-182 (198)
112 PF12854 PPR_1: PPR repeat 98.7 2E-08 4.3E-13 54.7 4.1 32 289-320 2-33 (34)
113 PRK15179 Vi polysaccharide bio 98.7 2.2E-06 4.7E-11 81.9 20.1 140 223-365 85-227 (694)
114 KOG1128 Uncharacterized conser 98.7 3E-06 6.5E-11 77.7 19.7 191 190-388 395-615 (777)
115 KOG1128 Uncharacterized conser 98.7 3.3E-06 7.2E-11 77.4 19.5 242 130-387 405-653 (777)
116 PF12854 PPR_1: PPR repeat 98.7 2.3E-08 4.9E-13 54.5 3.6 34 253-286 1-34 (34)
117 KOG1127 TPR repeat-containing 98.6 3E-06 6.5E-11 80.3 17.8 161 23-186 492-658 (1238)
118 KOG3081 Vesicle coat complex C 98.6 3.4E-05 7.3E-10 62.5 21.2 226 124-359 42-275 (299)
119 KOG1070 rRNA processing protei 98.6 1.8E-05 3.8E-10 77.9 22.9 231 118-354 1453-1699(1710)
120 PRK14720 transcript cleavage f 98.6 9.7E-06 2.1E-10 78.5 20.8 227 122-371 30-268 (906)
121 KOG0985 Vesicle coat protein c 98.6 0.0001 2.2E-09 70.5 26.5 202 92-320 1103-1305(1666)
122 KOG2053 Mitochondrial inherita 98.6 0.00066 1.4E-08 64.4 32.9 383 4-395 21-508 (932)
123 TIGR03302 OM_YfiO outer membra 98.6 6.5E-06 1.4E-10 69.1 17.4 182 156-357 31-234 (235)
124 KOG3081 Vesicle coat complex C 98.6 1.7E-05 3.7E-10 64.1 17.7 242 132-388 17-270 (299)
125 TIGR02552 LcrH_SycD type III s 98.5 1.7E-06 3.7E-11 65.6 11.7 93 297-389 20-114 (135)
126 COG4783 Putative Zn-dependent 98.5 1.8E-05 3.8E-10 69.6 18.8 126 261-388 309-436 (484)
127 KOG1914 mRNA cleavage and poly 98.5 0.00067 1.4E-08 60.7 31.7 128 21-152 18-166 (656)
128 KOG1127 TPR repeat-containing 98.5 2.9E-05 6.2E-10 73.9 20.6 364 7-385 507-909 (1238)
129 PLN02789 farnesyltranstransfer 98.5 0.00026 5.6E-09 61.6 25.1 113 105-219 49-168 (320)
130 PRK15179 Vi polysaccharide bio 98.5 4.1E-05 9E-10 73.4 21.6 143 189-333 82-229 (694)
131 COG5010 TadD Flp pilus assembl 98.5 7.5E-06 1.6E-10 66.1 13.6 162 57-222 66-231 (257)
132 PRK14720 transcript cleavage f 98.5 0.00015 3.2E-09 70.6 24.4 167 21-220 29-196 (906)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 7.5E-06 1.6E-10 72.5 14.2 123 261-387 171-295 (395)
134 KOG3060 Uncharacterized conser 98.4 0.0001 2.2E-09 59.3 18.4 166 197-364 56-229 (289)
135 TIGR02552 LcrH_SycD type III s 98.4 1.4E-05 3.1E-10 60.4 13.5 115 246-363 5-122 (135)
136 PRK15363 pathogenicity island 98.4 6.5E-06 1.4E-10 61.9 10.9 93 298-390 39-133 (157)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.1E-05 4.6E-10 69.6 15.1 129 194-324 170-298 (395)
138 KOG3060 Uncharacterized conser 98.3 9.1E-05 2E-09 59.6 16.8 162 227-390 55-221 (289)
139 COG4783 Putative Zn-dependent 98.3 0.00017 3.6E-09 63.7 19.8 138 231-389 313-454 (484)
140 TIGR00756 PPR pentatricopeptid 98.3 9.7E-07 2.1E-11 48.8 3.9 35 24-58 1-35 (35)
141 PF09976 TPR_21: Tetratricopep 98.3 3E-05 6.4E-10 59.4 13.0 83 302-385 56-143 (145)
142 PF09976 TPR_21: Tetratricopep 98.3 8.5E-05 1.8E-09 56.9 15.2 125 226-352 14-144 (145)
143 TIGR00756 PPR pentatricopeptid 98.3 1.6E-06 3.5E-11 47.9 4.1 35 124-158 1-35 (35)
144 PF13812 PPR_3: Pentatricopept 98.3 1.5E-06 3.2E-11 47.7 3.7 33 24-56 2-34 (34)
145 PF13812 PPR_3: Pentatricopept 98.2 2.6E-06 5.7E-11 46.7 4.3 33 124-156 2-34 (34)
146 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.5E-05 7.5E-10 56.8 11.6 97 264-360 7-110 (119)
147 PF13414 TPR_11: TPR repeat; P 98.2 6.5E-06 1.4E-10 53.9 6.4 65 325-389 2-67 (69)
148 PF12895 Apc3: Anaphase-promot 98.2 2.6E-06 5.6E-11 58.3 4.5 77 308-385 3-83 (84)
149 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.6E-05 7.9E-10 56.7 10.9 97 295-391 3-107 (119)
150 KOG0550 Molecular chaperone (D 98.2 5.3E-05 1.2E-09 65.2 12.7 273 102-399 58-360 (486)
151 cd00189 TPR Tetratricopeptide 98.2 2.9E-05 6.4E-10 54.3 9.9 93 297-389 3-97 (100)
152 PF13432 TPR_16: Tetratricopep 98.1 8.6E-06 1.9E-10 52.6 5.9 59 332-390 3-61 (65)
153 PF08579 RPM2: Mitochondrial r 98.1 6.3E-05 1.4E-09 52.5 9.9 80 227-306 28-116 (120)
154 COG4235 Cytochrome c biogenesi 98.1 9.6E-05 2.1E-09 61.4 12.7 110 291-400 153-267 (287)
155 PLN03088 SGT1, suppressor of 98.0 0.00012 2.6E-09 65.2 13.1 102 267-369 10-113 (356)
156 PLN03088 SGT1, suppressor of 98.0 6.4E-05 1.4E-09 66.9 11.1 90 301-390 9-100 (356)
157 PF05843 Suf: Suppressor of fo 98.0 0.00036 7.8E-09 59.9 15.0 134 225-360 2-141 (280)
158 KOG0553 TPR repeat-containing 98.0 1.7E-05 3.7E-10 65.4 6.5 109 267-376 89-199 (304)
159 KOG2041 WD40 repeat protein [G 98.0 0.0079 1.7E-07 55.9 23.4 195 8-222 679-907 (1189)
160 KOG0553 TPR repeat-containing 97.9 0.00012 2.5E-09 60.7 10.4 103 231-335 88-191 (304)
161 PF14559 TPR_19: Tetratricopep 97.9 1.9E-05 4.1E-10 51.5 4.9 55 337-391 2-56 (68)
162 cd00189 TPR Tetratricopeptide 97.9 0.00016 3.5E-09 50.5 10.0 91 266-357 7-99 (100)
163 PF01535 PPR: PPR repeat; Int 97.9 1.6E-05 3.5E-10 42.4 3.5 29 226-254 2-30 (31)
164 PF01535 PPR: PPR repeat; Int 97.9 1.7E-05 3.8E-10 42.2 3.5 31 124-154 1-31 (31)
165 PF08579 RPM2: Mitochondrial r 97.9 0.00032 7E-09 49.0 10.3 78 128-205 30-116 (120)
166 PF07079 DUF1347: Protein of u 97.9 0.015 3.2E-07 51.4 26.6 111 275-387 396-522 (549)
167 PF13371 TPR_9: Tetratricopept 97.9 5.6E-05 1.2E-09 50.0 6.5 59 333-391 2-60 (73)
168 PRK02603 photosystem I assembl 97.9 0.00023 5E-09 56.3 11.1 93 297-389 38-149 (172)
169 PRK10153 DNA-binding transcrip 97.9 0.0012 2.5E-08 61.6 17.1 66 295-360 421-487 (517)
170 PF14938 SNAP: Soluble NSF att 97.9 0.003 6.6E-08 54.4 18.3 167 126-320 38-222 (282)
171 PF05843 Suf: Suppressor of fo 97.9 0.00025 5.5E-09 60.8 11.5 129 260-389 2-136 (280)
172 COG4700 Uncharacterized protei 97.9 0.0045 9.8E-08 47.7 16.6 133 255-388 85-221 (251)
173 PF04840 Vps16_C: Vps16, C-ter 97.8 0.017 3.6E-07 50.3 25.7 78 201-284 185-262 (319)
174 PRK02603 photosystem I assembl 97.8 0.00067 1.5E-08 53.7 13.0 118 223-359 34-153 (172)
175 PF14938 SNAP: Soluble NSF att 97.8 0.0026 5.6E-08 54.9 17.5 107 226-333 157-275 (282)
176 PF12895 Apc3: Anaphase-promot 97.8 5.8E-05 1.3E-09 51.6 5.8 79 238-318 3-82 (84)
177 CHL00033 ycf3 photosystem I as 97.8 0.0003 6.5E-09 55.4 10.5 93 294-386 35-139 (168)
178 PF13432 TPR_16: Tetratricopep 97.8 8.3E-05 1.8E-09 47.9 6.1 61 300-360 3-65 (65)
179 PRK10153 DNA-binding transcrip 97.8 0.001 2.2E-08 62.0 15.3 136 254-392 332-485 (517)
180 PF10037 MRP-S27: Mitochondria 97.8 0.0011 2.4E-08 59.3 14.4 120 254-373 61-186 (429)
181 PF06239 ECSIT: Evolutionarily 97.8 0.00034 7.4E-09 55.4 9.7 89 221-309 44-153 (228)
182 PRK10866 outer membrane biogen 97.8 0.012 2.6E-07 49.2 19.6 61 129-191 38-102 (243)
183 PF04840 Vps16_C: Vps16, C-ter 97.7 0.025 5.5E-07 49.2 23.9 110 260-385 178-287 (319)
184 PF10037 MRP-S27: Mitochondria 97.7 0.00053 1.2E-08 61.3 11.8 119 88-206 61-186 (429)
185 KOG1538 Uncharacterized conser 97.7 0.0026 5.6E-08 58.4 15.2 242 92-354 555-845 (1081)
186 CHL00033 ycf3 photosystem I as 97.7 0.0015 3.3E-08 51.5 12.7 62 226-287 37-100 (168)
187 PRK15363 pathogenicity island 97.6 0.0033 7.1E-08 47.6 12.8 50 268-318 78-127 (157)
188 PF13281 DUF4071: Domain of un 97.6 0.034 7.4E-07 49.0 20.5 161 198-360 146-339 (374)
189 KOG2053 Mitochondrial inherita 97.6 0.08 1.7E-06 51.0 31.7 218 33-255 19-257 (932)
190 PRK10866 outer membrane biogen 97.6 0.018 3.8E-07 48.3 18.1 56 332-387 181-239 (243)
191 PF12688 TPR_5: Tetratrico pep 97.5 0.0021 4.5E-08 46.8 10.5 55 331-385 43-100 (120)
192 COG3898 Uncharacterized membra 97.5 0.051 1.1E-06 47.3 26.2 282 96-390 85-393 (531)
193 PRK15331 chaperone protein Sic 97.5 0.00084 1.8E-08 50.9 8.5 85 304-388 47-133 (165)
194 PF06239 ECSIT: Evolutionarily 97.5 0.00055 1.2E-08 54.2 7.7 97 12-108 34-153 (228)
195 PRK10803 tol-pal system protei 97.5 0.0011 2.4E-08 55.8 10.0 96 262-359 146-250 (263)
196 PF13414 TPR_11: TPR repeat; P 97.5 0.00023 5.1E-09 46.4 4.8 64 294-357 3-69 (69)
197 PF03704 BTAD: Bacterial trans 97.5 0.003 6.5E-08 48.4 11.6 113 269-395 16-136 (146)
198 PF14559 TPR_19: Tetratricopep 97.5 0.0008 1.7E-08 43.7 7.2 49 271-320 3-51 (68)
199 KOG2041 WD40 repeat protein [G 97.5 0.057 1.2E-06 50.5 20.6 155 6-183 748-903 (1189)
200 KOG1130 Predicted G-alpha GTPa 97.4 0.0014 3E-08 56.8 9.7 130 260-389 196-344 (639)
201 PF13525 YfiO: Outer membrane 97.4 0.041 8.8E-07 44.8 17.9 176 129-313 11-197 (203)
202 KOG1914 mRNA cleavage and poly 97.4 0.1 2.2E-06 47.4 32.0 152 224-377 366-527 (656)
203 PF12688 TPR_5: Tetratrico pep 97.4 0.0058 1.3E-07 44.5 11.2 91 128-218 6-100 (120)
204 COG3898 Uncharacterized membra 97.4 0.084 1.8E-06 46.0 24.2 287 24-320 83-389 (531)
205 KOG2280 Vacuolar assembly/sort 97.4 0.14 3.1E-06 48.4 25.5 326 27-384 441-794 (829)
206 COG4235 Cytochrome c biogenesi 97.3 0.012 2.5E-07 49.4 13.9 115 244-360 142-261 (287)
207 KOG2796 Uncharacterized conser 97.3 0.019 4.1E-07 47.0 14.3 136 225-360 178-320 (366)
208 PF13428 TPR_14: Tetratricopep 97.3 0.00045 9.8E-09 40.2 4.0 42 327-368 2-43 (44)
209 KOG0550 Molecular chaperone (D 97.3 0.073 1.6E-06 46.6 18.2 257 27-288 53-350 (486)
210 PF13371 TPR_9: Tetratricopept 97.3 0.0011 2.4E-08 43.7 6.2 63 302-364 3-67 (73)
211 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0016 3.4E-08 57.9 8.6 62 294-355 75-141 (453)
212 PF13431 TPR_17: Tetratricopep 97.2 0.00026 5.7E-09 38.4 2.2 33 349-381 2-34 (34)
213 PF09205 DUF1955: Domain of un 97.2 0.024 5.1E-07 41.1 12.4 141 234-392 12-152 (161)
214 PRK10803 tol-pal system protei 97.2 0.0094 2E-07 50.3 12.1 94 297-390 146-247 (263)
215 PF13525 YfiO: Outer membrane 97.2 0.015 3.3E-07 47.3 13.0 49 332-380 147-198 (203)
216 PF12921 ATP13: Mitochondrial 97.1 0.0071 1.5E-07 44.5 9.7 80 225-304 3-98 (126)
217 KOG2796 Uncharacterized conser 97.1 0.012 2.5E-07 48.2 11.4 125 62-187 181-315 (366)
218 COG4700 Uncharacterized protei 97.1 0.08 1.7E-06 41.1 16.7 98 155-252 86-188 (251)
219 KOG1130 Predicted G-alpha GTPa 97.1 0.0071 1.5E-07 52.6 10.6 95 260-354 236-343 (639)
220 PF13424 TPR_12: Tetratricopep 97.1 0.001 2.2E-08 44.6 4.7 62 327-388 6-74 (78)
221 KOG2280 Vacuolar assembly/sort 97.0 0.35 7.6E-06 45.9 22.8 103 279-387 668-771 (829)
222 KOG0543 FKBP-type peptidyl-pro 96.8 0.029 6.3E-07 49.0 11.6 95 295-389 258-355 (397)
223 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.39 8.5E-06 42.9 29.7 128 260-388 398-530 (660)
224 PF13281 DUF4071: Domain of un 96.7 0.33 7E-06 43.0 17.7 167 224-390 141-335 (374)
225 KOG1538 Uncharacterized conser 96.7 0.068 1.5E-06 49.6 13.8 176 25-221 600-801 (1081)
226 PRK11619 lytic murein transgly 96.6 0.75 1.6E-05 44.6 29.5 133 34-172 44-177 (644)
227 PF03704 BTAD: Bacterial trans 96.6 0.031 6.8E-07 42.7 9.8 69 227-296 65-138 (146)
228 PF13512 TPR_18: Tetratricopep 96.6 0.09 1.9E-06 39.2 11.4 60 303-362 19-83 (142)
229 KOG4555 TPR repeat-containing 96.6 0.03 6.5E-07 40.5 8.5 87 304-390 53-145 (175)
230 PF13424 TPR_12: Tetratricopep 96.6 0.0046 9.9E-08 41.4 4.4 27 261-287 7-33 (78)
231 PF04053 Coatomer_WDAD: Coatom 96.5 0.17 3.7E-06 46.4 15.4 164 130-324 268-432 (443)
232 PF10300 DUF3808: Protein of u 96.4 0.35 7.7E-06 45.0 17.3 161 226-389 190-376 (468)
233 smart00299 CLH Clathrin heavy 96.4 0.28 6.2E-06 37.1 14.9 126 227-371 10-136 (140)
234 KOG1585 Protein required for f 96.4 0.3 6.5E-06 39.8 14.0 201 125-348 33-249 (308)
235 COG3118 Thioredoxin domain-con 96.4 0.47 1E-05 40.0 15.6 144 234-378 144-290 (304)
236 KOG3941 Intermediate in Toll s 96.3 0.05 1.1E-06 45.1 9.6 98 213-310 54-174 (406)
237 COG1729 Uncharacterized protei 96.3 0.041 8.9E-07 45.6 9.2 101 261-362 144-251 (262)
238 KOG2610 Uncharacterized conser 96.3 0.19 4.1E-06 43.0 12.8 149 237-387 116-274 (491)
239 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.043 9.3E-07 49.1 9.3 61 258-320 74-138 (453)
240 PRK15331 chaperone protein Sic 96.1 0.12 2.7E-06 39.5 10.3 84 67-151 46-133 (165)
241 COG3118 Thioredoxin domain-con 96.1 0.19 4.2E-06 42.2 12.3 142 30-172 141-286 (304)
242 PF12921 ATP13: Mitochondrial 96.1 0.079 1.7E-06 39.0 9.1 80 258-355 1-81 (126)
243 COG0457 NrfG FOG: TPR repeat [ 96.1 0.64 1.4E-05 38.3 26.7 193 195-388 61-264 (291)
244 KOG3941 Intermediate in Toll s 96.0 0.045 9.9E-07 45.3 8.1 98 12-109 54-174 (406)
245 PRK11906 transcriptional regul 96.0 0.18 3.9E-06 45.4 12.2 145 239-385 273-432 (458)
246 COG1729 Uncharacterized protei 96.0 0.28 6.1E-06 40.8 12.5 93 227-320 145-241 (262)
247 KOG0890 Protein kinase of the 96.0 2.4 5.2E-05 46.2 21.6 316 63-391 1388-1733(2382)
248 KOG2114 Vacuolar assembly/sort 95.9 0.95 2.1E-05 43.8 16.9 175 96-285 337-516 (933)
249 COG4105 ComL DNA uptake lipopr 95.8 0.86 1.9E-05 37.7 20.0 56 332-387 173-231 (254)
250 KOG1941 Acetylcholine receptor 95.8 0.71 1.5E-05 40.1 14.4 51 199-249 128-187 (518)
251 PRK11906 transcriptional regul 95.8 0.95 2.1E-05 41.0 15.7 140 209-352 274-433 (458)
252 KOG1941 Acetylcholine receptor 95.8 0.32 6.9E-06 42.1 12.1 222 133-354 16-274 (518)
253 KOG0543 FKBP-type peptidyl-pro 95.7 0.048 1E-06 47.7 7.4 107 266-390 215-321 (397)
254 PF07079 DUF1347: Protein of u 95.7 1.5 3.2E-05 39.5 26.9 345 4-352 91-521 (549)
255 PF00515 TPR_1: Tetratricopept 95.5 0.036 7.9E-07 29.8 4.0 32 327-358 2-33 (34)
256 PF04097 Nic96: Nup93/Nic96; 95.4 2.8 6.1E-05 40.7 19.4 61 26-87 114-181 (613)
257 PF07719 TPR_2: Tetratricopept 95.4 0.055 1.2E-06 29.0 4.6 31 328-358 3-33 (34)
258 KOG1258 mRNA processing protei 95.4 2.3 5E-05 39.7 28.1 361 11-374 64-489 (577)
259 PF13512 TPR_18: Tetratricopep 95.4 0.82 1.8E-05 34.2 14.0 116 231-361 17-134 (142)
260 COG3629 DnrI DNA-binding trans 95.3 0.1 2.2E-06 44.0 7.9 59 329-387 156-214 (280)
261 PF09205 DUF1955: Domain of un 95.2 0.87 1.9E-05 33.3 14.1 137 134-291 13-152 (161)
262 COG5107 RNA14 Pre-mRNA 3'-end 95.1 0.46 1E-05 42.4 11.4 132 226-359 399-535 (660)
263 KOG4555 TPR repeat-containing 95.1 0.56 1.2E-05 34.2 9.7 88 102-189 52-146 (175)
264 KOG1920 IkappaB kinase complex 95.0 4.7 0.0001 41.0 20.5 25 127-151 794-820 (1265)
265 KOG1920 IkappaB kinase complex 95.0 1.2 2.6E-05 44.9 14.7 80 301-387 972-1053(1265)
266 COG4649 Uncharacterized protei 94.9 0.19 4.1E-06 38.6 7.5 134 22-156 58-200 (221)
267 PF07035 Mic1: Colon cancer-as 94.9 1.3 2.9E-05 34.3 12.4 134 43-186 14-148 (167)
268 PF13428 TPR_14: Tetratricopep 94.9 0.031 6.8E-07 32.3 2.7 40 360-401 1-40 (44)
269 PF04053 Coatomer_WDAD: Coatom 94.9 0.86 1.9E-05 41.9 13.1 157 201-386 269-428 (443)
270 PF02259 FAT: FAT domain; Int 94.9 2.8 6E-05 37.5 20.2 147 223-371 145-303 (352)
271 PF04184 ST7: ST7 protein; In 94.8 1 2.2E-05 41.1 12.9 57 330-386 263-321 (539)
272 KOG2610 Uncharacterized conser 94.8 0.45 9.8E-06 40.8 10.1 116 270-386 114-235 (491)
273 KOG4234 TPR repeat-containing 94.8 0.13 2.9E-06 40.4 6.4 123 267-390 103-234 (271)
274 PF10300 DUF3808: Protein of u 94.7 3.7 8E-05 38.4 20.6 154 28-184 193-373 (468)
275 COG4105 ComL DNA uptake lipopr 94.7 2.1 4.6E-05 35.5 18.6 72 132-203 43-116 (254)
276 COG4649 Uncharacterized protei 94.6 1.2 2.7E-05 34.4 11.0 129 225-354 60-195 (221)
277 PF13176 TPR_7: Tetratricopept 94.6 0.061 1.3E-06 29.5 3.3 25 363-387 2-26 (36)
278 KOG2114 Vacuolar assembly/sort 94.5 2.8 6E-05 40.8 15.4 178 160-351 336-515 (933)
279 PF08631 SPO22: Meiosis protei 94.4 3 6.5E-05 35.9 21.8 18 69-86 4-21 (278)
280 KOG1585 Protein required for f 94.2 2.7 5.8E-05 34.6 17.9 55 262-317 193-250 (308)
281 COG0457 NrfG FOG: TPR repeat [ 94.0 2.9 6.3E-05 34.3 24.9 125 233-358 139-268 (291)
282 KOG1258 mRNA processing protei 94.0 5.5 0.00012 37.3 23.3 336 22-380 44-420 (577)
283 PF13176 TPR_7: Tetratricopept 93.9 0.12 2.5E-06 28.3 3.5 27 328-354 1-27 (36)
284 PF07035 Mic1: Colon cancer-as 93.9 2.4 5.2E-05 32.9 14.7 38 79-116 15-52 (167)
285 PF04184 ST7: ST7 protein; In 93.9 5.2 0.00011 36.7 15.8 61 228-288 263-324 (539)
286 COG4785 NlpI Lipoprotein NlpI, 93.8 2.9 6.4E-05 33.7 14.6 162 223-391 98-268 (297)
287 PF09613 HrpB1_HrpK: Bacterial 93.8 0.68 1.5E-05 35.4 8.4 98 295-393 8-110 (160)
288 KOG1586 Protein required for f 93.8 3.1 6.8E-05 34.0 14.2 136 226-362 76-231 (288)
289 TIGR02561 HrpB1_HrpK type III 93.8 0.61 1.3E-05 35.0 7.9 80 295-376 8-94 (153)
290 COG3629 DnrI DNA-binding trans 93.5 0.85 1.8E-05 38.7 9.3 61 226-287 155-215 (280)
291 PF13181 TPR_8: Tetratricopept 93.3 0.19 4.2E-06 26.8 3.7 30 328-357 3-32 (34)
292 PF02259 FAT: FAT domain; Int 93.2 5.9 0.00013 35.4 16.1 68 324-391 144-215 (352)
293 COG2976 Uncharacterized protei 93.2 3.4 7.5E-05 32.7 12.8 128 226-357 56-190 (207)
294 KOG1586 Protein required for f 93.1 3.7 8E-05 33.6 11.8 27 168-194 164-190 (288)
295 PF00637 Clathrin: Region in C 92.9 0.13 2.7E-06 39.2 3.6 85 230-321 13-97 (143)
296 PRK11619 lytic murein transgly 92.9 10 0.00022 37.1 32.9 186 209-395 295-511 (644)
297 PF13170 DUF4003: Protein of u 92.7 6.2 0.00014 34.2 15.4 133 139-301 78-224 (297)
298 PF10602 RPN7: 26S proteasome 92.5 1.9 4.1E-05 34.1 9.7 62 125-186 38-101 (177)
299 smart00299 CLH Clathrin heavy 92.4 3.6 7.9E-05 31.0 15.1 44 127-171 11-54 (140)
300 PF10602 RPN7: 26S proteasome 92.4 3.7 8.1E-05 32.5 11.2 95 226-320 38-139 (177)
301 PF08631 SPO22: Meiosis protei 92.2 7.1 0.00015 33.6 23.0 158 226-386 86-272 (278)
302 PF07719 TPR_2: Tetratricopept 92.0 0.31 6.7E-06 25.9 3.5 30 361-390 2-31 (34)
303 KOG2066 Vacuolar assembly/sort 91.9 13 0.00028 36.2 25.8 168 30-223 363-535 (846)
304 PF13374 TPR_10: Tetratricopep 91.7 0.48 1E-05 26.6 4.2 27 328-354 4-30 (42)
305 PF00515 TPR_1: Tetratricopept 91.6 0.37 8.1E-06 25.7 3.5 30 361-390 2-31 (34)
306 PF13431 TPR_17: Tetratricopep 91.5 0.28 6E-06 26.4 2.8 24 90-113 10-33 (34)
307 PF13170 DUF4003: Protein of u 91.4 5 0.00011 34.8 11.7 134 39-200 78-224 (297)
308 KOG4570 Uncharacterized conser 91.3 2.9 6.3E-05 35.8 9.6 98 187-288 58-164 (418)
309 KOG2066 Vacuolar assembly/sort 91.1 16 0.00035 35.7 22.3 141 3-151 367-533 (846)
310 COG1747 Uncharacterized N-term 91.0 13 0.00028 34.4 22.6 176 192-372 65-251 (711)
311 PF13174 TPR_6: Tetratricopept 90.9 0.57 1.2E-05 24.6 3.8 24 334-357 8-31 (33)
312 PF09613 HrpB1_HrpK: Bacterial 90.9 2.2 4.9E-05 32.6 8.0 112 266-381 17-130 (160)
313 PF07721 TPR_4: Tetratricopept 90.8 0.37 8.1E-06 23.9 2.7 23 362-384 3-25 (26)
314 PF00637 Clathrin: Region in C 90.7 0.36 7.7E-06 36.7 3.8 85 63-149 12-96 (143)
315 KOG4648 Uncharacterized conser 90.3 0.73 1.6E-05 39.7 5.5 98 267-365 105-204 (536)
316 KOG1550 Extracellular protein 90.3 11 0.00023 36.4 14.0 154 235-393 260-430 (552)
317 KOG4234 TPR repeat-containing 90.3 7.2 0.00016 31.2 10.3 94 231-326 102-201 (271)
318 TIGR02561 HrpB1_HrpK type III 90.0 4.8 0.0001 30.4 8.9 106 259-387 7-120 (153)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 89.7 3 6.5E-05 28.7 6.9 63 239-302 22-84 (103)
320 PF02284 COX5A: Cytochrome c o 89.5 2.7 5.9E-05 29.2 6.7 61 242-303 28-88 (108)
321 PF13374 TPR_10: Tetratricopep 89.3 0.83 1.8E-05 25.6 3.8 29 361-389 3-31 (42)
322 PF02284 COX5A: Cytochrome c o 89.1 3.9 8.3E-05 28.5 7.1 49 319-367 38-86 (108)
323 COG2976 Uncharacterized protei 89.0 10 0.00022 30.2 12.4 124 261-390 56-189 (207)
324 PRK09687 putative lyase; Provi 88.9 14 0.00031 31.8 25.2 135 157-304 141-277 (280)
325 COG3947 Response regulator con 88.9 14 0.0003 31.6 13.4 60 329-388 282-341 (361)
326 PRK10941 hypothetical protein; 88.8 3 6.5E-05 35.5 8.1 61 329-389 184-244 (269)
327 KOG0276 Vesicle coat complex C 88.7 5.2 0.00011 37.6 9.8 164 22-220 580-748 (794)
328 PRK15180 Vi polysaccharide bio 88.5 9.7 0.00021 34.8 11.2 129 270-402 300-431 (831)
329 PF13174 TPR_6: Tetratricopept 88.5 0.68 1.5E-05 24.3 2.8 29 362-390 2-30 (33)
330 cd00923 Cyt_c_Oxidase_Va Cytoc 88.4 3.9 8.4E-05 28.2 6.7 47 320-366 36-82 (103)
331 COG4785 NlpI Lipoprotein NlpI, 88.1 13 0.00028 30.3 14.4 161 122-289 98-267 (297)
332 PRK09687 putative lyase; Provi 88.0 16 0.00036 31.4 26.0 25 332-357 241-265 (280)
333 PF13181 TPR_8: Tetratricopept 88.0 1.3 2.9E-05 23.4 3.9 29 361-389 2-30 (34)
334 PF11207 DUF2989: Protein of u 87.7 6.5 0.00014 31.5 8.8 72 241-313 123-197 (203)
335 KOG4642 Chaperone-dependent E3 87.7 2.2 4.7E-05 35.0 6.1 85 269-355 20-107 (284)
336 smart00028 TPR Tetratricopepti 87.2 1.3 2.7E-05 22.5 3.5 24 363-386 4-27 (34)
337 KOG4570 Uncharacterized conser 86.9 15 0.00032 31.7 10.8 46 274-319 115-160 (418)
338 COG4455 ImpE Protein of avirul 86.8 2.7 5.8E-05 34.0 6.1 72 297-368 4-80 (273)
339 KOG4648 Uncharacterized conser 86.2 3.1 6.6E-05 36.1 6.6 93 231-326 104-198 (536)
340 PF11207 DUF2989: Protein of u 85.7 12 0.00026 30.0 9.3 78 134-213 118-198 (203)
341 KOG0276 Vesicle coat complex C 85.7 24 0.00053 33.4 12.3 103 202-321 646-748 (794)
342 PF14561 TPR_20: Tetratricopep 85.5 3.7 7.9E-05 28.2 5.7 49 327-375 23-73 (90)
343 TIGR03504 FimV_Cterm FimV C-te 85.5 1.6 3.4E-05 25.2 3.2 26 365-390 4-29 (44)
344 PF14853 Fis1_TPR_C: Fis1 C-te 85.4 1.9 4.1E-05 26.0 3.7 33 332-364 7-39 (53)
345 PF08311 Mad3_BUB1_I: Mad3/BUB 83.7 14 0.00029 27.4 8.4 42 344-385 81-124 (126)
346 COG5159 RPN6 26S proteasome re 82.9 25 0.00055 29.9 10.3 49 230-278 9-64 (421)
347 smart00386 HAT HAT (Half-A-TPR 82.8 3 6.6E-05 21.5 3.7 29 340-368 1-29 (33)
348 KOG4507 Uncharacterized conser 82.1 6.1 0.00013 37.0 7.1 96 272-367 620-717 (886)
349 COG4455 ImpE Protein of avirul 81.7 27 0.00059 28.5 10.3 76 227-303 4-81 (273)
350 PRK15180 Vi polysaccharide bio 81.7 44 0.00095 30.9 23.2 90 307-396 711-812 (831)
351 PF04190 DUF410: Protein of un 81.6 32 0.0007 29.3 13.9 102 4-116 2-113 (260)
352 KOG2396 HAT (Half-A-TPR) repea 80.9 48 0.001 30.8 27.8 66 323-388 456-524 (568)
353 PF07163 Pex26: Pex26 protein; 79.1 25 0.00054 29.9 9.1 87 130-216 90-181 (309)
354 KOG1308 Hsp70-interacting prot 78.3 1.9 4.2E-05 37.2 2.7 85 271-356 126-212 (377)
355 PF06552 TOM20_plant: Plant sp 77.7 9.7 0.00021 29.9 6.0 43 342-391 96-138 (186)
356 PF09670 Cas_Cas02710: CRISPR- 77.5 56 0.0012 29.7 12.0 54 234-288 141-198 (379)
357 PF04097 Nic96: Nup93/Nic96; 77.4 76 0.0016 31.1 18.7 55 98-152 116-181 (613)
358 TIGR02508 type_III_yscG type I 77.4 22 0.00047 24.9 8.4 85 74-162 21-106 (115)
359 PF09986 DUF2225: Uncharacteri 77.2 19 0.00041 29.6 8.0 49 343-391 142-196 (214)
360 TIGR03504 FimV_Cterm FimV C-te 76.6 6.6 0.00014 22.6 3.7 24 230-253 5-28 (44)
361 KOG1464 COP9 signalosome, subu 76.1 47 0.001 28.1 18.9 147 198-350 150-327 (440)
362 KOG1464 COP9 signalosome, subu 75.7 48 0.001 28.0 15.4 195 120-314 23-251 (440)
363 COG1747 Uncharacterized N-term 75.7 71 0.0015 29.9 18.8 159 223-388 65-233 (711)
364 PF04190 DUF410: Protein of un 75.4 51 0.0011 28.1 16.7 104 105-219 2-116 (260)
365 KOG0545 Aryl-hydrocarbon recep 75.3 24 0.00053 29.3 7.8 21 266-286 185-205 (329)
366 PRK10941 hypothetical protein; 75.1 17 0.00036 31.1 7.4 65 299-363 186-252 (269)
367 KOG0890 Protein kinase of the 74.6 1.6E+02 0.0035 33.5 23.7 145 29-182 1389-1542(2382)
368 COG3947 Response regulator con 74.4 56 0.0012 28.1 14.0 42 267-309 287-328 (361)
369 cd08819 CARD_MDA5_2 Caspase ac 74.2 21 0.00046 24.2 6.1 38 205-243 48-85 (88)
370 PF07163 Pex26: Pex26 protein; 74.0 51 0.0011 28.2 9.5 85 198-282 88-181 (309)
371 KOG2063 Vacuolar assembly/sort 73.6 98 0.0021 31.5 13.0 157 227-383 507-707 (877)
372 PRK12798 chemotaxis protein; R 73.4 73 0.0016 29.0 20.6 184 206-392 125-327 (421)
373 PF10579 Rapsyn_N: Rapsyn N-te 72.9 9.5 0.00021 25.2 4.2 45 338-382 18-65 (80)
374 PF11846 DUF3366: Domain of un 72.4 16 0.00035 29.3 6.6 37 321-357 139-175 (193)
375 TIGR02508 type_III_yscG type I 72.4 30 0.00066 24.2 9.2 52 201-254 47-98 (115)
376 KOG0376 Serine-threonine phosp 72.3 3.1 6.6E-05 37.8 2.5 99 266-366 11-112 (476)
377 COG2909 MalT ATP-dependent tra 72.0 1.2E+02 0.0025 30.7 24.6 214 169-385 426-684 (894)
378 COG4976 Predicted methyltransf 72.0 8.3 0.00018 31.5 4.5 51 338-388 7-57 (287)
379 PF13762 MNE1: Mitochondrial s 72.0 41 0.00089 25.5 9.8 50 223-272 78-128 (145)
380 PF06552 TOM20_plant: Plant sp 71.9 7.1 0.00015 30.6 4.0 33 342-374 51-83 (186)
381 PF08424 NRDE-2: NRDE-2, neces 71.4 73 0.0016 28.2 15.4 80 223-304 18-109 (321)
382 PHA02875 ankyrin repeat protei 71.0 86 0.0019 28.8 14.0 207 32-259 8-230 (413)
383 PF10345 Cohesin_load: Cohesin 70.7 1.1E+02 0.0024 30.0 19.5 212 174-388 7-253 (608)
384 PF11846 DUF3366: Domain of un 70.2 20 0.00043 28.9 6.6 32 256-287 141-172 (193)
385 KOG0551 Hsp90 co-chaperone CNS 70.1 15 0.00033 31.9 5.9 83 303-385 90-178 (390)
386 PF10579 Rapsyn_N: Rapsyn N-te 70.1 9.4 0.0002 25.2 3.7 45 271-315 18-64 (80)
387 KOG4077 Cytochrome c oxidase, 70.0 36 0.00078 25.0 6.8 59 242-301 67-125 (149)
388 KOG4077 Cytochrome c oxidase, 69.8 31 0.00068 25.3 6.5 47 320-366 78-124 (149)
389 KOG0403 Neoplastic transformat 69.6 92 0.002 28.6 14.9 63 329-391 512-574 (645)
390 PF04910 Tcf25: Transcriptiona 69.6 86 0.0019 28.3 14.3 122 258-388 39-167 (360)
391 KOG4507 Uncharacterized conser 69.6 15 0.00032 34.6 6.1 86 306-391 619-707 (886)
392 PF11663 Toxin_YhaV: Toxin wit 69.2 6.9 0.00015 28.9 3.2 33 133-167 105-137 (140)
393 PF12862 Apc5: Anaphase-promot 68.6 21 0.00046 24.6 5.6 53 337-389 9-70 (94)
394 PF10366 Vps39_1: Vacuolar sor 68.3 41 0.00089 24.0 8.0 27 125-151 41-67 (108)
395 PF00244 14-3-3: 14-3-3 protei 68.1 71 0.0015 26.7 10.1 161 230-391 7-200 (236)
396 COG5108 RPO41 Mitochondrial DN 67.6 36 0.00078 32.8 8.2 24 229-252 33-56 (1117)
397 PF04090 RNA_pol_I_TF: RNA pol 67.6 39 0.00084 27.3 7.4 62 327-388 42-104 (199)
398 PF10366 Vps39_1: Vacuolar sor 67.4 43 0.00093 23.9 8.1 26 227-252 42-67 (108)
399 smart00777 Mad3_BUB1_I Mad3/BU 67.0 49 0.0011 24.4 7.9 40 345-384 82-123 (125)
400 PF14863 Alkyl_sulf_dimr: Alky 66.2 35 0.00076 25.8 6.6 63 310-375 57-119 (141)
401 PF11848 DUF3368: Domain of un 65.1 26 0.00056 20.6 5.0 32 236-267 14-45 (48)
402 KOG3824 Huntingtin interacting 65.1 14 0.00031 31.7 4.7 46 338-383 128-173 (472)
403 PF09477 Type_III_YscG: Bacter 64.1 50 0.0011 23.5 8.1 86 72-161 20-106 (116)
404 KOG1550 Extracellular protein 63.8 1.5E+02 0.0032 28.8 23.2 114 74-189 228-359 (552)
405 PF11848 DUF3368: Domain of un 62.9 24 0.00053 20.7 4.2 31 70-100 14-44 (48)
406 KOG4814 Uncharacterized conser 62.3 33 0.00071 32.9 6.9 87 304-390 364-458 (872)
407 PF13762 MNE1: Mitochondrial s 61.8 69 0.0015 24.3 8.8 81 227-307 42-128 (145)
408 KOG0687 26S proteasome regulat 61.3 1.2E+02 0.0025 26.8 11.8 93 261-355 106-210 (393)
409 COG0735 Fur Fe2+/Zn2+ uptake r 60.7 50 0.0011 25.1 6.7 63 144-207 7-69 (145)
410 KOG4279 Serine/threonine prote 60.3 1.5E+02 0.0032 29.4 10.8 186 178-365 183-405 (1226)
411 PF14689 SPOB_a: Sensor_kinase 60.0 27 0.00058 21.9 4.3 26 262-287 26-51 (62)
412 PF10255 Paf67: RNA polymerase 59.9 65 0.0014 29.4 8.2 21 300-320 128-148 (404)
413 KOG2034 Vacuolar sorting prote 59.2 2.1E+02 0.0045 29.1 24.0 21 198-218 535-555 (911)
414 PHA02875 ankyrin repeat protei 58.7 1.4E+02 0.003 27.4 10.8 197 134-350 10-223 (413)
415 COG0790 FOG: TPR repeat, SEL1 58.6 1.2E+02 0.0026 26.2 18.8 147 239-391 92-268 (292)
416 COG0735 Fur Fe2+/Zn2+ uptake r 58.3 65 0.0014 24.5 7.0 63 45-108 8-70 (145)
417 PF12862 Apc5: Anaphase-promot 58.0 47 0.001 22.8 5.8 25 332-356 47-71 (94)
418 PRK13342 recombination factor 58.0 1.6E+02 0.0034 27.3 16.5 36 237-272 243-278 (413)
419 KOG2297 Predicted translation 58.0 1.3E+02 0.0028 26.2 10.4 18 225-242 322-339 (412)
420 PF13934 ELYS: Nuclear pore co 57.5 1.1E+02 0.0024 25.4 13.7 55 299-354 113-168 (226)
421 COG5191 Uncharacterized conser 57.5 23 0.0005 30.6 4.7 77 292-368 105-184 (435)
422 PF09477 Type_III_YscG: Bacter 57.5 67 0.0015 22.9 8.0 48 203-252 50-97 (116)
423 KOG4642 Chaperone-dependent E3 56.3 1.2E+02 0.0026 25.4 10.2 114 234-351 20-142 (284)
424 COG4976 Predicted methyltransf 56.2 24 0.00051 29.1 4.4 53 306-358 7-61 (287)
425 PRK10564 maltose regulon perip 56.1 26 0.00057 30.2 4.9 31 226-256 259-289 (303)
426 PF10255 Paf67: RNA polymerase 55.8 90 0.0019 28.6 8.4 55 197-251 126-191 (404)
427 PF09454 Vps23_core: Vps23 cor 55.4 33 0.00072 21.8 4.2 48 258-306 7-54 (65)
428 KOG2300 Uncharacterized conser 55.0 1.9E+02 0.004 27.2 25.3 347 36-384 60-509 (629)
429 PRK10564 maltose regulon perip 55.0 26 0.00056 30.2 4.7 36 126-161 260-295 (303)
430 PRK09857 putative transposase; 54.9 91 0.002 27.1 8.2 65 330-394 210-274 (292)
431 KOG0376 Serine-threonine phosp 54.4 31 0.00067 31.7 5.3 102 231-336 11-115 (476)
432 PF14853 Fis1_TPR_C: Fis1 C-te 54.2 47 0.001 20.1 4.9 33 128-162 6-38 (53)
433 PF14689 SPOB_a: Sensor_kinase 54.1 27 0.00059 21.9 3.7 25 364-388 27-51 (62)
434 PF12968 DUF3856: Domain of Un 53.4 87 0.0019 22.9 7.0 57 330-386 59-126 (144)
435 KOG0292 Vesicle coat complex C 53.4 1.9E+02 0.0041 29.4 10.4 131 202-355 652-782 (1202)
436 PF11663 Toxin_YhaV: Toxin wit 53.2 18 0.00038 26.9 3.0 32 235-268 106-137 (140)
437 KOG4567 GTPase-activating prot 53.1 1.6E+02 0.0034 25.8 9.8 41 280-320 264-304 (370)
438 COG5187 RPN7 26S proteasome re 52.8 1.1E+02 0.0025 26.3 7.9 94 291-388 112-220 (412)
439 cd00280 TRFH Telomeric Repeat 52.3 1.2E+02 0.0026 24.2 7.6 68 240-310 85-159 (200)
440 PRK13342 recombination factor 52.2 2E+02 0.0042 26.6 16.5 43 125-167 229-274 (413)
441 PF11817 Foie-gras_1: Foie gra 51.7 67 0.0014 27.1 6.8 55 332-386 184-244 (247)
442 COG2912 Uncharacterized conser 50.6 70 0.0015 27.2 6.5 57 332-388 187-243 (269)
443 COG2909 MalT ATP-dependent tra 50.4 2.9E+02 0.0063 28.1 24.3 24 265-288 624-647 (894)
444 PF09797 NatB_MDM20: N-acetylt 49.0 74 0.0016 28.8 7.1 59 328-386 182-243 (365)
445 PF09454 Vps23_core: Vps23 cor 48.6 69 0.0015 20.4 5.3 49 121-170 6-54 (65)
446 PRK12798 chemotaxis protein; R 48.2 2.2E+02 0.0048 26.1 17.6 190 198-390 86-287 (421)
447 PF07720 TPR_3: Tetratricopept 48.2 45 0.00098 18.1 4.5 16 367-382 8-23 (36)
448 PRK11639 zinc uptake transcrip 47.9 1.3E+02 0.0028 23.6 7.4 60 250-310 17-76 (169)
449 KOG2471 TPR repeat-containing 47.0 2.5E+02 0.0055 26.4 14.8 39 334-372 343-381 (696)
450 KOG4567 GTPase-activating prot 47.0 2E+02 0.0043 25.2 9.0 71 178-249 263-343 (370)
451 cd08819 CARD_MDA5_2 Caspase ac 46.9 91 0.002 21.2 6.5 34 106-139 49-82 (88)
452 COG5159 RPN6 26S proteasome re 46.0 2E+02 0.0043 24.9 18.2 53 64-116 9-68 (421)
453 KOG1308 Hsp70-interacting prot 44.2 24 0.00051 30.9 2.9 89 104-194 125-218 (377)
454 PRK09462 fur ferric uptake reg 44.0 1.4E+02 0.0031 22.7 7.1 58 250-308 8-66 (148)
455 PF13929 mRNA_stabil: mRNA sta 43.7 2.2E+02 0.0047 24.7 21.4 254 4-273 8-292 (292)
456 PF11817 Foie-gras_1: Foie gra 43.6 1.3E+02 0.0027 25.5 7.2 17 31-47 18-34 (247)
457 PF02847 MA3: MA3 domain; Int 42.9 95 0.0021 22.1 5.7 21 129-149 8-28 (113)
458 PF14561 TPR_20: Tetratricopep 42.7 1.1E+02 0.0024 21.0 7.3 40 350-389 12-51 (90)
459 PF03745 DUF309: Domain of unk 41.9 56 0.0012 20.5 3.6 48 33-80 9-61 (62)
460 PF09670 Cas_Cas02710: CRISPR- 39.6 3E+02 0.0065 25.1 11.8 57 130-187 138-198 (379)
461 KOG2396 HAT (Half-A-TPR) repea 39.5 3.4E+02 0.0073 25.7 30.3 98 291-388 456-558 (568)
462 PF12583 TPPII_N: Tripeptidyl 39.4 1.5E+02 0.0032 22.1 5.8 38 335-372 85-122 (139)
463 PF11768 DUF3312: Protein of u 39.0 3.2E+02 0.007 26.1 9.3 92 300-391 414-525 (545)
464 PRK09462 fur ferric uptake reg 38.8 1.7E+02 0.0038 22.2 7.3 60 49-109 8-68 (148)
465 KOG2659 LisH motif-containing 38.8 2.3E+02 0.0049 23.5 9.7 98 255-354 22-131 (228)
466 TIGR02710 CRISPR-associated pr 38.4 3.1E+02 0.0067 25.0 11.3 53 232-284 138-196 (380)
467 PF10475 DUF2450: Protein of u 38.2 2.3E+02 0.005 24.7 8.2 112 199-317 104-220 (291)
468 PRK13800 putative oxidoreducta 37.8 5E+02 0.011 27.2 27.3 248 120-388 632-880 (897)
469 KOG0686 COP9 signalosome, subu 37.8 3.2E+02 0.007 25.0 13.7 58 94-151 151-215 (466)
470 PF00244 14-3-3: 14-3-3 protei 37.8 2.4E+02 0.0053 23.6 11.3 59 128-186 6-65 (236)
471 KOG3364 Membrane protein invol 37.5 1.8E+02 0.0039 21.9 8.8 72 291-362 29-107 (149)
472 PF02847 MA3: MA3 domain; Int 37.4 83 0.0018 22.4 4.6 23 199-221 8-30 (113)
473 cd08326 CARD_CASP9 Caspase act 37.4 1.3E+02 0.0028 20.3 5.7 35 206-240 43-77 (84)
474 KOG3807 Predicted membrane pro 37.0 3E+02 0.0065 24.4 11.4 17 271-287 287-303 (556)
475 KOG0545 Aryl-hydrocarbon recep 36.8 2.6E+02 0.0057 23.6 8.9 88 100-188 185-294 (329)
476 cd07153 Fur_like Ferric uptake 36.3 1.3E+02 0.0029 21.5 5.6 46 64-109 6-51 (116)
477 cd07153 Fur_like Ferric uptake 36.0 96 0.0021 22.2 4.8 38 236-273 12-49 (116)
478 PF10516 SHNi-TPR: SHNi-TPR; 36.0 80 0.0017 17.5 3.7 28 361-388 2-29 (38)
479 PRK11639 zinc uptake transcrip 35.8 1.6E+02 0.0034 23.1 6.2 46 230-275 31-76 (169)
480 PF13934 ELYS: Nuclear pore co 35.7 2.6E+02 0.0056 23.3 16.0 53 198-251 113-167 (226)
481 PF04762 IKI3: IKI3 family; I 34.1 5.8E+02 0.013 26.8 13.1 45 271-321 884-928 (928)
482 PF12926 MOZART2: Mitotic-spin 33.9 1.5E+02 0.0033 20.1 7.3 41 280-320 29-69 (88)
483 PF02607 B12-binding_2: B12 bi 33.6 1.4E+02 0.003 19.5 5.0 41 134-174 12-52 (79)
484 PF14669 Asp_Glu_race_2: Putat 33.5 2.6E+02 0.0056 22.6 13.6 178 186-385 1-206 (233)
485 COG5108 RPO41 Mitochondrial DN 33.5 4.9E+02 0.011 25.8 9.7 47 63-109 33-81 (1117)
486 PF04034 DUF367: Domain of unk 33.4 2E+02 0.0043 21.3 7.5 58 294-351 66-124 (127)
487 PRK13800 putative oxidoreducta 33.2 5.9E+02 0.013 26.7 26.6 246 90-354 632-880 (897)
488 PF07575 Nucleopor_Nup85: Nup8 33.0 4.7E+02 0.01 25.5 13.1 28 157-184 404-431 (566)
489 COG5191 Uncharacterized conser 32.2 1.1E+02 0.0023 26.8 4.9 66 323-388 104-170 (435)
490 PF12926 MOZART2: Mitotic-spin 32.2 1.6E+02 0.0036 20.0 5.8 44 245-288 29-72 (88)
491 KOG4279 Serine/threonine prote 32.1 5.4E+02 0.012 25.9 10.6 98 133-253 297-395 (1226)
492 PF08311 Mad3_BUB1_I: Mad3/BUB 31.4 2.2E+02 0.0047 21.0 8.7 43 141-183 81-124 (126)
493 PF07678 A2M_comp: A-macroglob 30.9 3.2E+02 0.0069 23.0 7.7 20 269-288 202-221 (246)
494 KOG3807 Predicted membrane pro 30.5 3.9E+02 0.0084 23.7 12.6 106 171-289 229-341 (556)
495 PF01475 FUR: Ferric uptake re 30.4 1E+02 0.0022 22.3 4.2 43 129-171 13-55 (120)
496 PF08424 NRDE-2: NRDE-2, neces 30.2 3.9E+02 0.0085 23.7 15.1 97 190-287 16-130 (321)
497 PF01475 FUR: Ferric uptake re 30.2 1.4E+02 0.0031 21.6 4.9 48 62-109 11-58 (120)
498 PF09868 DUF2095: Uncharacteri 30.0 1.3E+02 0.0029 21.6 4.2 44 63-107 66-109 (128)
499 PF04910 Tcf25: Transcriptiona 30.0 4.2E+02 0.0092 24.0 16.4 27 192-218 39-65 (360)
500 PF06957 COPI_C: Coatomer (COP 29.6 4.2E+02 0.0092 24.6 8.5 43 317-359 289-333 (422)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-71 Score=534.76 Aligned_cols=421 Identities=34% Similarity=0.628 Sum_probs=413.7
Q ss_pred CccccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHH
Q 038550 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80 (423)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 80 (423)
+|++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.++
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l 246 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh
Q 038550 81 HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
+..+.+.|+.||..+|+.|+++|++.|++++|.++| ++.++|+.+||.++.+|++.|++++|+++|++|.+.|+.||..
T Consensus 247 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999999999 7778899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCC
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (423)
||+.++.+|++.|++++|.+++..|.+.|+.|+..++++|+++|+++|++++|.++|++|.++|..+||.||.+|++.|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHh
Q 038550 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (423)
.++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+. |+.|+..+|+.++.+|++.|++++|.++++
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875 999999999999999999999999999999
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCc
Q 038550 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCS 398 (423)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 398 (423)
+|+..|+..+|++|+.+|...|+++.|..+++++.+..|.+..+|..++.+|++.|++++|.+++++|.++|+++.|+++
T Consensus 487 ~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s 566 (697)
T PLN03081 487 RAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACT 566 (697)
T ss_pred HCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeeeeecCCCCCCCCC
Q 038550 399 WVQTRDEVQDFVVNDRMKTFTPG 421 (423)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~ 421 (423)
|+.+.+.+|.|.++|.+||++++
T Consensus 567 ~i~~~~~~~~f~~~d~~h~~~~~ 589 (697)
T PLN03081 567 WIEVKKQDHSFFSGDRLHPQSRE 589 (697)
T ss_pred EEEECCeEEEEccCCCCCccHHH
Confidence 99999999999999999998764
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.8e-68 Score=523.64 Aligned_cols=419 Identities=41% Similarity=0.742 Sum_probs=410.7
Q ss_pred CccccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHH
Q 038550 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80 (423)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 80 (423)
+|++.|++++|.++|++|.+||..+||.+|.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh
Q 038550 81 HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
++.|.+.|+.|+..+|+.|+++|++.|++++|.++| ++..+|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 999999999999999999999999999999999999 77788999999999999999999999999999986 5899999
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCC
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (423)
||+.++.+|++.|+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+.+ .+|..+||++|.+|++.|+
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCCCChhhHHHHHHHHHhcCChHHHHHHHh
Q 038550 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (423)
.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++.+|++.|++++|.++++
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 55999999999999999999999999999999
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCc
Q 038550 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCS 398 (423)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 398 (423)
+|+++||..+|++|+.+|...|+.+.++...+++.+++|++...|..+...|...|+|++|.++.+.|.++|++++|++|
T Consensus 650 ~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 650 KMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeeeeecCCCCCCCCC
Q 038550 399 WVQTRDEVQDFVVNDRMKTFTPG 421 (423)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~ 421 (423)
|+.+.+++|.|.++|.+||+++|
T Consensus 730 ~ie~~~~~~~f~~~d~~h~~~~~ 752 (857)
T PLN03077 730 WVEVKGKVHAFLTDDESHPQIKE 752 (857)
T ss_pred EEEECCEEEEEecCCCCCcchHH
Confidence 99999999999999999999864
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-61 Score=468.99 Aligned_cols=395 Identities=17% Similarity=0.234 Sum_probs=296.0
Q ss_pred ccccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHH
Q 038550 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 81 (423)
|++.|.+++|..+|+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|
T Consensus 416 ~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf 495 (1060)
T PLN03218 416 CKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495 (1060)
T ss_pred HHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 44566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhc-----hhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHh--cCC
Q 038550 82 ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-----ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL--LGM 154 (423)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~ 154 (423)
++|.+.|+.||..+|+.+|.+|++.|++++|.++|+ ...||..+|+.+|.+|++.|++++|.++|++|.. .|+
T Consensus 496 ~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi 575 (1060)
T PLN03218 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC
Confidence 777777777777777777777777777777777772 2356777777777777777777777777777765 467
Q ss_pred CCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC----CCChhhHHHH
Q 038550 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP----VKDSASWNTL 230 (423)
Q Consensus 155 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l 230 (423)
.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.+
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsL 655 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777776 4677777777
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
|.+|++.|++++|.+++++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++
T Consensus 656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhC---CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcchHHHHHHHHHh----c---------
Q 038550 311 EDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK-PQHCGYYILLSNMYAE----A--------- 373 (423)
Q Consensus 311 ~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~----~--------- 373 (423)
++|.++|++| ++.||..+|+.++.+|++.|+++.|.+++++|.+.+ .++..+|+.++..|.+ .
T Consensus 736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~ 815 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVS 815 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 7777777776 677777777777777777777777777777777765 3445566666544321 1
Q ss_pred ----------CChhHHHHHHHHHHhccccCCCC
Q 038550 374 ----------GKWDEASKVRELMKSREAKKNPG 396 (423)
Q Consensus 374 ----------g~~~~A~~~~~~m~~~~~~~~~~ 396 (423)
+..++|..+|++|.+.|+.|+..
T Consensus 816 f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~ 848 (1060)
T PLN03218 816 FDSGRPQIENKWTSWALMVYRETISAGTLPTME 848 (1060)
T ss_pred hhccccccccchHHHHHHHHHHHHHCCCCCCHH
Confidence 12356777777777777777753
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.6e-61 Score=466.76 Aligned_cols=391 Identities=16% Similarity=0.252 Sum_probs=372.0
Q ss_pred ccccCCcchhHHhhcccCCc-----ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCcc
Q 038550 2 YAKSSRPAEASYLFHNIAEK-----NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRP 76 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 76 (423)
|++.|++++|+++|++|+++ +...++.++..|.+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|+++.
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~ 455 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDG 455 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHH
Confidence 56889999999999999874 445667788889999999999999999975 899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chh----cCCcchHHHHHHHHhcCCChhhHHHHHHHHHh
Q 038550 77 GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS----FRDEVSYNILIVGYSQTSDCSESLSLFSEMRL 151 (423)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 151 (423)
|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++| ++. .||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 333 58999999999999999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHH--hccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC----CCChh
Q 038550 152 LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR--KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP----VKDSA 225 (423)
Q Consensus 152 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~ 225 (423)
.|+.||..||+.+|.+|++.|++++|.+++++|.. .++.|+..+|++++.+|++.|++++|.++|+.|. .|+..
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 99999999999999999999999999999999987 6789999999999999999999999999999997 46779
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (423)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.||.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHhhC---CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCChhHHHH
Q 038550 306 RAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK-PQHCGYYILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 381 (423)
+.|++++|.++|++| ++.||..+|+.||.+|++.|++++|.++|++|.+.+ .++..+|..++.+|++.|++++|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999998 689999999999999999999999999999998876 5678899999999999999999999
Q ss_pred HHHHHHhccccCCCC
Q 038550 382 VRELMKSREAKKNPG 396 (423)
Q Consensus 382 ~~~~m~~~~~~~~~~ 396 (423)
++++|.+.|+.|+..
T Consensus 776 l~~~M~k~Gi~pd~~ 790 (1060)
T PLN03218 776 LLSQAKEDGIKPNLV 790 (1060)
T ss_pred HHHHHHHcCCCCCHH
Confidence 999999999999864
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.4e-61 Score=474.40 Aligned_cols=392 Identities=25% Similarity=0.385 Sum_probs=367.1
Q ss_pred CccccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHH
Q 038550 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80 (423)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 80 (423)
+|++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++
T Consensus 231 ~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l 310 (857)
T PLN03077 231 MYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310 (857)
T ss_pred HHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh
Q 038550 81 HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
+..|.+.|+.||..+|+.|+.+|++.|++++|.++| ++..+|..+||.++.+|++.|++++|+++|++|.+.|+.||..
T Consensus 311 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~ 390 (857)
T PLN03077 311 HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390 (857)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce
Confidence 999999999999999999999999999999999999 7778899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCC
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (423)
||+.++.+|++.|+++.+.++++.+.+.|..|+..+++.|+.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+
T Consensus 391 t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~ 470 (857)
T PLN03077 391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR 470 (857)
T ss_pred eHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhh
Q 038550 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (423)
.++|..+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..++++|+.+|+++|++++|.++|+.
T Consensus 471 ~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~ 549 (857)
T PLN03077 471 CFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS 549 (857)
T ss_pred HHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh
Confidence 9999999999986 599999999999999999999999999999999999988888888888888888888888888888
Q ss_pred CCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHH-hccccCCC
Q 038550 320 LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK-PQHCGYYILLSNMYAEAGKWDEASKVRELMK-SREAKKNP 395 (423)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~ 395 (423)
+ .||..+|+++|.+|++.|+.++|.++|++|.+.+ .++..+|..++.+|.+.|++++|.++|++|. +.|+.|+.
T Consensus 550 ~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 550 H--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred c--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 7 7788888888888888888888888888887765 4456778888888888888888888888887 56777764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.3e-57 Score=434.71 Aligned_cols=374 Identities=22% Similarity=0.344 Sum_probs=360.3
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCC-CCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHH
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHN-EFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 99 (423)
++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456699999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhh
Q 038550 100 TDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178 (423)
Q Consensus 100 ~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 178 (423)
+.+|++.|++++|.++| ++..||..+||.++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999 77789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 038550 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258 (423)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 258 (423)
+++..+.+.|..++..++++|+++|++.|++++|.++|++|.++|+.+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHh
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 338 (423)
..||+.++.+|++.|++++|.+++..|.+.|++||..+|+.|+.+|+++|++++|.++|++|. .||..+|++||.+|++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999996 6899999999999999
Q ss_pred cCChhHHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh-ccccCCC
Q 038550 339 YGNVELGAWAAEHLFMLK-PQHCGYYILLSNMYAEAGKWDEASKVRELMKS-REAKKNP 395 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~~~ 395 (423)
.|+.++|.++|++|.+.+ .++..+|..++.+|.+.|.+++|.++|+.|.+ .|+.|+.
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999998876 55678899999999999999999999999986 5887765
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.5e-28 Score=244.80 Aligned_cols=382 Identities=13% Similarity=0.042 Sum_probs=257.3
Q ss_pred ccccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHH
Q 038550 2 YAKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 78 (423)
|.+.|++++|...|+++.+ .+..++..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|.
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAV 553 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHH
Confidence 4567788888888877643 345566677777777788888888887777653 335566777777777777777777
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCC
Q 038550 79 EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 154 (423)
..++++.+.+ +.+...+..++..+...|++++|..++ +..+.+...|..+..++...|++++|...|+++.+..
T Consensus 554 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 631 (899)
T TIGR02917 554 AWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ- 631 (899)
T ss_pred HHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 7777776654 445566666777777777777777777 2234455667777777777777777777777776653
Q ss_pred CCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHH
Q 038550 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLI 231 (423)
Q Consensus 155 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li 231 (423)
+.+...+..+..++...|++++|..+++.+.+..+ .+...+..++..+...|++++|..+++.+. ..+...+..+.
T Consensus 632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 710 (899)
T TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEG 710 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHH
Confidence 34555666677777777777777777777766532 335566667777777777777777776665 23455566666
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038550 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311 (423)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (423)
..+...|++++|...++++...+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|+++
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 67777777777777777766653 344556666666777777777777777766653 445666666667777777777
Q ss_pred HHHHHHhhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 312 DAVKLIKNL-PVE-PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 312 ~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
+|.+.|+++ ... +++.+++.+...+...|+ ++|+..++++.+..|.++.++..++.++...|++++|.++++++.+.
T Consensus 788 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 788 KAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777777666 222 355566666666666666 66777777776666666666666666677777777777777776665
Q ss_pred cc
Q 038550 390 EA 391 (423)
Q Consensus 390 ~~ 391 (423)
+.
T Consensus 867 ~~ 868 (899)
T TIGR02917 867 AP 868 (899)
T ss_pred CC
Confidence 43
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.5e-27 Score=237.61 Aligned_cols=380 Identities=11% Similarity=0.001 Sum_probs=267.2
Q ss_pred ccccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHH
Q 038550 2 YAKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 78 (423)
|.+.|++++|..+++.+.+ ++..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 4566777777777777654 355677777777777777777777777776543 234456666677777777777777
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCC
Q 038550 79 EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 154 (423)
+.++.+.+.+ +.+..++..+...+.+.|+.++|...| ...+.+...+..++..+...|++++|..+++++.+..
T Consensus 520 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 520 QRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 7777777664 445667777777777777777777777 2234455666777777777777777777777776643
Q ss_pred CCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHH
Q 038550 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLI 231 (423)
Q Consensus 155 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li 231 (423)
+.+..++..+..++...|++++|...++.+.+..+ .+...+..+..++.+.|++++|...|+++. +.+..++..++
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 676 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA 676 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 45566777777777777777777777777776543 344556667777777777777777777654 33556777777
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038550 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311 (423)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (423)
..+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++.+...+ |+..++..+..++.+.|+++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 77777777777777777777664 3355666777777777777777777777777653 44456666777777777777
Q ss_pred HHHHHHhhC-CC-CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 312 DAVKLIKNL-PV-EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 312 ~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
+|.+.++++ .. ..+...+..+...|...|++++|...|+++.+..|+++.++..++..+...|+ ++|+.++++..+.
T Consensus 754 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 754 EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 777777766 22 33566677777777777777777777777777777777777777777777777 6777777777654
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=5.9e-23 Score=186.41 Aligned_cols=318 Identities=10% Similarity=0.023 Sum_probs=226.6
Q ss_pred HHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhch-hc-CC------cchHHHHHHHHhcC
Q 038550 65 LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF-RD------EVSYNILIVGYSQT 136 (423)
Q Consensus 65 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~-~~------~~~~~~l~~~~~~~ 136 (423)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|...++. .. ++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344556777888888888887764 34455677777777777777777777621 11 11 13456666777777
Q ss_pred CChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHh
Q 038550 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216 (423)
Q Consensus 137 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 216 (423)
|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 77777777777776542 34455666666666666777777666666655433221100
Q ss_pred ccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhh
Q 038550 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296 (423)
Q Consensus 217 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 296 (423)
....+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++...+......+
T Consensus 179 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 179 ------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred ------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 01134456677788889999999999888753 22456777888889999999999999999987642223456
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh---
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE--- 372 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 372 (423)
+..++.+|...|++++|...++++ ...|+...+..+...+.+.|++++|..+++++.+..|++.. +..+...+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~ 330 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccC
Confidence 788899999999999999999987 55787777788899999999999999999999999988764 4444444443
Q ss_pred cCChhHHHHHHHHHHhccccCCCCCcccccccceeeeeecC
Q 038550 373 AGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413 (423)
Q Consensus 373 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (423)
.|+.+++..++++|.+++++|+|...+...+.....|...+
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~~~c~~cg~~~~~~~~~c 371 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPRYRCRNCGFTARTLYWHC 371 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCCEECCCCCCCCccceeEC
Confidence 56899999999999999999999877776666555544433
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=7.7e-22 Score=188.33 Aligned_cols=252 Identities=13% Similarity=0.034 Sum_probs=206.8
Q ss_pred CCChhhHHHHHHHHHhcC-CCC-chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHH
Q 038550 136 TSDCSESLSLFSEMRLLG-MKH-DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213 (423)
Q Consensus 136 ~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 213 (423)
.+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++..+...+ .....|..+..++...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHH
Confidence 367889999999998765 233 445677888888899999999999999988653 23556777888999999999999
Q ss_pred HHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 038550 214 KIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290 (423)
Q Consensus 214 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 290 (423)
..|+... +.+..+|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++.....
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 9998765 3467889999999999999999999999998864 2356778888889999999999999999998763
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCH-h-------HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 038550 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDA-N-------IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 361 (423)
+.+...++.+...+...|++++|+..|++. .+.|+. . .++..+..+...|++++|...++++.+.+|.+..
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 456788899999999999999999999986 444421 1 1222222344569999999999999999999988
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 362 YYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
++..++.++.+.|++++|+..|++..+..
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987643
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=5.5e-21 Score=194.04 Aligned_cols=383 Identities=10% Similarity=-0.002 Sum_probs=280.0
Q ss_pred ccccCCcchhHHhhcccCC--c-ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCC-CchhHH------------HHH
Q 038550 2 YAKSSRPAEASYLFHNIAE--K-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVTLT------------NVL 65 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~------------~l~ 65 (423)
+.+.|++++|+..|++..+ | +..++..+...+.+.|++++|+..|++..+..... ....+. ...
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 3467999999999998765 3 67788999999999999999999999988754211 111121 123
Q ss_pred HHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHH-----------
Q 038550 66 PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILI----------- 130 (423)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~----------- 130 (423)
..+.+.|++++|...|+++++.. +.+...+..+..++...|++++|++.| +..+.+...+..+.
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence 45678899999999999998875 445677778889999999999999999 22233333443333
Q ss_pred -------------------------------HHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhH
Q 038550 131 -------------------------------VGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179 (423)
Q Consensus 131 -------------------------------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 179 (423)
..+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 33445677777777777777643 2345566667777777788888888
Q ss_pred HHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCC----h---------hhHHHHHHHHhccCCHHHHHHH
Q 038550 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD----S---------ASWNTLILGYGMLGEVDTAINL 246 (423)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~a~~~ 246 (423)
.++.+.+..+. +...+..+...+...++.++|...++.+.... . ..+..+...+...|+.++|..+
T Consensus 517 ~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 77777765432 23333334445666777777877777765321 1 1122345567778888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-
Q 038550 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP- 324 (423)
Q Consensus 247 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~- 324 (423)
++. .+.+...+..+...+.+.|++++|...|+++.+.. +.+...+..++..|...|++++|++.++.+ ...|
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 772 24456677788889999999999999999999874 456788899999999999999999999987 4455
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc------hHHHHHHHHHhcCChhHHHHHHHHHHh-ccccC
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG------YYILLSNMYAEAGKWDEASKVRELMKS-REAKK 393 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~ 393 (423)
+..++..+..++...|++++|..+++++....|+++. .+..++..+...|++++|+..|++... .|+.|
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 4566777888899999999999999999987765543 556678889999999999999998863 34443
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=3.3e-22 Score=174.92 Aligned_cols=359 Identities=12% Similarity=0.120 Sum_probs=299.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchH-HHHHHHH
Q 038550 23 IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF-LTNALTD 101 (423)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~ 101 (423)
..+|+.+...+-..|++++|+.+++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++. .|+.. ..+.+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 4578889999999999999999999999864 225678999999999999999999999999876 44443 4455666
Q ss_pred HHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCc-hhhHHHHHHHHHhHhhHHh
Q 038550 102 MYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD-VVSFMGAISACANLAAIKQ 176 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 176 (423)
.+...|++.+|...+ +..+.-.++|+.|...+...|+...|++.|++..+. .|+ ...|..+...|...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 677789999999888 333445678999999999999999999999999874 454 5688899999999999999
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--K-DSASWNTLILGYGMLGEVDTAINLFEAMRED 253 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 253 (423)
|...+.......+ .....+..+...|...|.+|-|+..|++... | -...|+.|..++-..|++.+|...+.+....
T Consensus 271 Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 271 AVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 9999988877543 3355566677888999999999999998763 3 4578999999999999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCH-hHHH
Q 038550 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT-EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDA-NIWG 330 (423)
Q Consensus 254 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~-~~~~ 330 (423)
.. -...+.+.|...+...|.++.|..+|....+- .|. ...++.|...|-..|++++|+..+++. .++|+. ..++
T Consensus 350 ~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 350 CP-NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred CC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence 32 24568888999999999999999999988874 343 567888889999999999999999887 788864 5888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 331 ALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 331 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.+...|-..|+.+.|.+.+.+++..+|.-..+++.|+..|-..|+..+|++-|+...+..
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 899999999999999999999999999988999999999999999999999999887643
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=6.7e-21 Score=181.36 Aligned_cols=350 Identities=10% Similarity=-0.030 Sum_probs=266.7
Q ss_pred cCCcchhHHhhcccCC------cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHH
Q 038550 5 SSRPAEASYLFHNIAE------KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78 (423)
Q Consensus 5 ~g~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 78 (423)
+.+++.---+|...++ .+..-.-.++..+.+.|++++|..+++....... -+...+..++.+....|+++.|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 18 QEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHH
Confidence 3344444444444443 2333455667788889999999999998887642 34455666667777899999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCC
Q 038550 79 EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 154 (423)
..++++.+.. +.+...+..+...+...|++++|...+ ...+.+...+..+...+...|++++|...++++....
T Consensus 97 ~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~- 174 (656)
T PRK15174 97 QVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV- 174 (656)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-
Confidence 9999998875 556778888888999999999999988 3345567788889999999999999999999887653
Q ss_pred CCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHH
Q 038550 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLI 231 (423)
Q Consensus 155 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li 231 (423)
+.+...+..+ ..+...|++++|...++.+.+....++......+..++.+.|++++|...++... +.+...+..+.
T Consensus 175 P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg 253 (656)
T PRK15174 175 PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG 253 (656)
T ss_pred CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 2233333333 3477889999999999988776544445555556778889999999999998765 33567788888
Q ss_pred HHHhccCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038550 232 LGYGMLGEVDT----AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307 (423)
Q Consensus 232 ~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (423)
..+...|++++ |...+++..+.. +.+...+..+...+...|++++|...+++..... +.+...+..+..++.+.
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQV 331 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 89999999885 788999888763 2256788888899999999999999999988864 34566677788889999
Q ss_pred CChHHHHHHHhhC-CCCCCHhH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 308 GLMEDAVKLIKNL-PVEPDANI-WGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 308 ~~~~~a~~~~~~~-~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
|++++|...|+++ ...|+... +..+..++...|+.++|...|+++.+..|++.
T Consensus 332 G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 332 GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999887 45665433 34456678899999999999999999988764
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=3.6e-22 Score=174.69 Aligned_cols=362 Identities=14% Similarity=0.092 Sum_probs=308.6
Q ss_pred ccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHH-HHHHhhcCCCCccHHH
Q 038550 4 KSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN-VLPACARGHFLRPGKE 79 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~ 79 (423)
..|++++|+.+++.+.+ ..+.+|.-+..++...|+.+.|.+.|.+.++. .|+.....+ +-..+-..|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 57899999999999876 46789999999999999999999999998875 466654433 4444556899999999
Q ss_pred HHHHHHHcCCCCc-hHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCC
Q 038550 80 IHARIIRKGLNFD-LFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154 (423)
Q Consensus 80 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 154 (423)
.|.+.++.. |. ...|+.|...+-..|++..|+..| ...+.-..+|-.|...|...+.++.|+..|.+....
T Consensus 206 cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 206 CYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 999998773 43 457888999999999999999999 233445678999999999999999999999998874
Q ss_pred CC-chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHH
Q 038550 155 KH-DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTL 230 (423)
Q Consensus 155 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 230 (423)
.| ....+..+...|...|.++.|+..+++.++..+. -...|+.|..++-..|+..+|.+.|.+.. .....+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 45 4567888888999999999999999999886543 36788999999999999999999998776 3456788999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGVGYD-PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT-EMHYACMVDLLGRAG 308 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 308 (423)
...|...|.++.|..+|....+- .|. ...++.|...|-++|++++|...|++.++ +.|+ ...|+.+...|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 99999999999999999998874 454 45788999999999999999999999987 5676 568889999999999
Q ss_pred ChHHHHHHHhhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 309 LMEDAVKLIKNL-PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 309 ~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
+.+.|.+.+.+. .+.|. ...++.|...|...|++.+|+..|+.+.+++|+.+.++..++.++.-..+|
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 999999999887 67775 568899999999999999999999999999999999999888776544444
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=6.7e-21 Score=172.99 Aligned_cols=292 Identities=16% Similarity=0.099 Sum_probs=217.4
Q ss_pred HHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCc---hHHHHHHHHHHH
Q 038550 28 AMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD---LFLTNALTDMYA 104 (423)
Q Consensus 28 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 104 (423)
.....+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 33455678899999999999999874 23556888899999999999999999999987643222 356788899999
Q ss_pred hcCChHHHHHHh-ch---hcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCch----hhHHHHHHHHHhHhhHHh
Q 038550 105 KCGCLNLAQNVF-NI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV----VSFMGAISACANLAAIKQ 176 (423)
Q Consensus 105 ~~g~~~~a~~~~-~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~ 176 (423)
+.|++++|..+| +. .+.+..+++.++..+.+.|++++|.+.++++.+.+..+.. ..+..+...+.+.|++++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999 22 3456778999999999999999999999999886532221 122233334444445555
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 256 (423)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+..
T Consensus 199 A~~~~~~al~~~--------------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 199 ARALLKKALAAD--------------------------------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred HHHHHHHHHhHC--------------------------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 555444444322 113445666777788888888888888888765332
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHH
Q 038550 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGA 335 (423)
Q Consensus 257 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~ 335 (423)
....++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++ ...|+...++.++..
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 22456778888888889999999999888875 456666678888888999999999988876 667888888888877
Q ss_pred HHh---cCChhHHHHHHHHHHh
Q 038550 336 CRI---YGNVELGAWAAEHLFM 354 (423)
Q Consensus 336 ~~~---~~~~~~a~~~~~~~~~ 354 (423)
+.. .|+.+++..+++++.+
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhhccCCccchhHHHHHHHHHH
Confidence 664 4578888888888776
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=7.4e-20 Score=174.28 Aligned_cols=353 Identities=13% Similarity=0.012 Sum_probs=281.4
Q ss_pred HHhCCChHHHHHHHhhchhCC--CCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChH
Q 038550 33 FAQNRLELKALQLVREMPIHN--EFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN 110 (423)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 110 (423)
+.++.+|+.-.-.|+...++- -.-+..-...++..+.+.|+++.|..+++..+..... +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 445566666555565554331 1112334556677788999999999999999987533 3455555667777899999
Q ss_pred HHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHH
Q 038550 111 LAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186 (423)
Q Consensus 111 ~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 186 (423)
+|...| ...+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+..
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999 4456677889999999999999999999999999853 44566788889999999999999999998877
Q ss_pred hccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 038550 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK----DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262 (423)
Q Consensus 187 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 262 (423)
..+.+....+. + ..+...|++++|...++.+.+. +...+..+..++...|++++|...++++.+.. +.+...+
T Consensus 173 ~~P~~~~a~~~-~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPPRGDMIAT-C-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCCCHHHHHH-H-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 66544433332 3 3478899999999999886532 33444556778889999999999999999864 3367788
Q ss_pred HHHHHHHhccCcHHH----HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHH
Q 038550 263 IAILTACSHGGLVEK----GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGAC 336 (423)
Q Consensus 263 ~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 336 (423)
..+...+...|++++ |...++++.+.. +.+...+..+...+...|++++|...+++. ...| +...+..+..++
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 889999999999985 899999998864 446778889999999999999999999988 4556 456777888999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
...|++++|+..++++.+..|.++..+..++.++...|++++|+..|++..+...
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999877777778889999999999999999877643
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=1.1e-19 Score=184.70 Aligned_cols=318 Identities=11% Similarity=0.035 Sum_probs=163.4
Q ss_pred hhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-c---hhcCCc--chHH------------HH
Q 038550 68 CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N---ISFRDE--VSYN------------IL 129 (423)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~---~~~~~~--~~~~------------~l 129 (423)
+...|++++|...|++.++.. +.+...+..+..++.+.|++++|+..| + ..+.+. ..|. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 445566666666666666553 335566666666666677777776666 1 111111 1111 11
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHH--------
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD-------- 201 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-------- 201 (423)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.|+++.+..+.. ...+..+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~-~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN-TNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCHH
Confidence 334556666667777666666643 3344455566666666677777777776666543321 122222222
Q ss_pred ----------------------------------HHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHH
Q 038550 202 ----------------------------------FYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAI 244 (423)
Q Consensus 202 ----------------------------------~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~ 244 (423)
.+...|++++|.+.|++.. +.+...+..+...|.+.|++++|.
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 2333444444444444433 113334444444555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc------------------------------------
Q 038550 245 NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD------------------------------------ 288 (423)
Q Consensus 245 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------------------------------ 288 (423)
..++++.+... .+...+..+...+...++.++|...++.+...
T Consensus 516 ~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 55555443211 11211111111122222222222222211000
Q ss_pred ---CCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchH
Q 038550 289 ---SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY 363 (423)
Q Consensus 289 ---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 363 (423)
..+.+...+..+...+.+.|++++|+..|+++ ...| +...+..+...+...|++++|+..++.+.+..|+++.++
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~ 674 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQ 674 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHH
Confidence 01223334444555556666666666666655 3344 455666666666667777777777776666666666666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 364 ILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 364 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
..++.++...|++++|.++++++...
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 66666677777777777777766654
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=9.9e-20 Score=177.05 Aligned_cols=382 Identities=8% Similarity=-0.009 Sum_probs=291.2
Q ss_pred cccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHH
Q 038550 3 AKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 79 (423)
...|+.++|+.++.+... .+...+..+...+...|++++|.++|++..+.. +.+...+..+...+...|++++|..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 357999999999988764 344568999999999999999999999988753 3345667788888999999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCC
Q 038550 80 IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155 (423)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 155 (423)
.++++++.. +.+.. +..+..++...|+.++|...+ ...+.+...+..+...+...+..+.|+..+++... .
T Consensus 105 ~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~ 179 (765)
T PRK10049 105 KAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---T 179 (765)
T ss_pred HHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---C
Confidence 999999874 44556 888889999999999999999 44455677777888888889999999998887654 2
Q ss_pred Cch------hhHHHHHHHH-----HhHhhH---HhhhHHHHHHHHh-ccCcchH-HH-HH---HHHHHHhcCCHHHHHHH
Q 038550 156 HDV------VSFMGAISAC-----ANLAAI---KQGKEIHGVTIRK-HLHTHLF-VA-NS---ILDFYTRSGRIDLANKI 215 (423)
Q Consensus 156 ~~~------~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~-~~---l~~~~~~~~~~~~A~~~ 215 (423)
|+. .....++... ...+++ ++|...++.+.+. ...|+.. .+ .. .+.++...|++++|+..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 321 0111122222 122334 7788888888764 2222221 11 11 13345677999999999
Q ss_pred hccCCCCC---h-hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038550 216 FDCLPVKD---S-ASWNTLILGYGMLGEVDTAINLFEAMREDGVGY---DPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 216 ~~~~~~~~---~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (423)
|+.+...+ + .....+...|...|++++|+..|+++.+..... .......+..++...|++++|..+++.+...
T Consensus 260 ~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 260 YQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 99987532 1 122235678999999999999999987653211 1345666777889999999999999999875
Q ss_pred CC-----------CCC---hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 289 SV-----------KPT---EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHL 352 (423)
Q Consensus 289 ~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 352 (423)
.. .|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+...|++++|+..++++
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a 419 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKA 419 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 21 122 224456778889999999999999998 4455 6778889999999999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 353 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.+..|+++.++..++..+...|++++|+.+++++.+..
T Consensus 420 l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 420 EVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999998754
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=3.1e-18 Score=163.69 Aligned_cols=365 Identities=10% Similarity=-0.072 Sum_probs=264.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 038550 25 SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104 (423)
Q Consensus 25 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (423)
.+......+.+.|++++|++.|++.+.. .|+...|..+..++.+.|++++|+..++..++.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3556677889999999999999998864 5788889999999999999999999999999875 445678888999999
Q ss_pred hcCChHHHHHHhch---hcC-CcchHHHHHHHHhcCCChhhHHHHHHHHHhcC---------------------------
Q 038550 105 KCGCLNLAQNVFNI---SFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--------------------------- 153 (423)
Q Consensus 105 ~~g~~~~a~~~~~~---~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------------------------- 153 (423)
..|++++|+..|.. ..+ +......++..+.. ..+........+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 99999999887721 111 11111111111111 01111111111110
Q ss_pred ----CCCch-hhHHHHHHH---HHhHhhHHhhhHHHHHHHHhc--cCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC--
Q 038550 154 ----MKHDV-VSFMGAISA---CANLAAIKQGKEIHGVTIRKH--LHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-- 221 (423)
Q Consensus 154 ----~~~~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 221 (423)
..++. ..+..+... ....+++++|...++.....+ .+.....+..+...+...|++++|...|++...
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 00100 011111110 122367889999999998865 223456677788889999999999999998753
Q ss_pred C-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHH
Q 038550 222 K-DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300 (423)
Q Consensus 222 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 300 (423)
| +...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~l 439 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQL 439 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHH
Confidence 3 45678888899999999999999999998864 2367889999999999999999999999999864 4467778888
Q ss_pred HHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHH-------HHHHHH
Q 038550 301 VDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL-------LSNMYA 371 (423)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~ 371 (423)
..++.+.|++++|+..|++. ...| +...++.+...+...|++++|+..|+++.+..|.+...+.. ....+.
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 89999999999999999987 4455 57788999999999999999999999999998875443221 122334
Q ss_pred hcCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 372 EAGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
..|++++|.+++++..+.. |+....+.
T Consensus 520 ~~~~~~eA~~~~~kAl~l~--p~~~~a~~ 546 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIID--PECDIAVA 546 (615)
T ss_pred HhhhHHHHHHHHHHHHhcC--CCcHHHHH
Confidence 4799999999999987653 44433333
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=7.7e-18 Score=161.12 Aligned_cols=386 Identities=10% Similarity=-0.002 Sum_probs=284.6
Q ss_pred ccccCCcchhHHhhcccCC--cChh-hHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHH
Q 038550 2 YAKSSRPAEASYLFHNIAE--KNIV-SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 78 (423)
..|.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.... .+........+...+...|++++|.
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3689999999999999876 4431 2338888889999999999999998821 1112223333355788889999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chh--cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCC
Q 038550 79 EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS--FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 155 (423)
++++++++.. +.++..+..++..+...++.++|++.+ +.. .|+...+..++..+...++..+|++.++++.+.. +
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P 200 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-P 200 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-C
Confidence 9999999886 445677778889999999999999999 332 3343444344444444566666999999999864 3
Q ss_pred CchhhHHHHHHHHHhHhhHHhhhHH------------------------------------------------HHHHHH-
Q 038550 156 HDVVSFMGAISACANLAAIKQGKEI------------------------------------------------HGVTIR- 186 (423)
Q Consensus 156 ~~~~~~~~ll~~~~~~~~~~~a~~~------------------------------------------------~~~~~~- 186 (423)
-+...+..+..++.+.|-...|.++ ++.+..
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~ 280 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR 280 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh
Confidence 3555555666555554433332222 222222
Q ss_pred hccCcch-HHH-H---HHHHHHHhcCCHHHHHHHhccCCCC----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC---
Q 038550 187 KHLHTHL-FVA-N---SILDFYTRSGRIDLANKIFDCLPVK----DSASWNTLILGYGMLGEVDTAINLFEAMREDG--- 254 (423)
Q Consensus 187 ~~~~~~~-~~~-~---~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--- 254 (423)
.+..|.. ..| . -.+-++...|+..++++.|+.+..+ ...+-..+..+|...+++++|..+++.+....
T Consensus 281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT 360 (822)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence 1111211 111 1 2345677889999999999999843 34566778899999999999999999987643
Q ss_pred --CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-----------CCC---hhhHHHHHHHHHhcCChHHHHHHHh
Q 038550 255 --VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV-----------KPT---EMHYACMVDLLGRAGLMEDAVKLIK 318 (423)
Q Consensus 255 --~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (423)
..++......|..++...+++++|..+++.+.+... .|| ...+..++..+...|+..+|++.++
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 122444467889999999999999999999998411 122 1234456777889999999999999
Q ss_pred hC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 319 NL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 319 ~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
++ ...| |......+...+...|.+.+|+..++.+....|++..+....+..+...|++.+|..+.++..+..
T Consensus 441 ~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 441 DLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 98 4556 888999999999999999999999999999999999999999999999999999999998876654
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=4.8e-18 Score=165.35 Aligned_cols=364 Identities=10% Similarity=-0.022 Sum_probs=271.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHH
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (423)
+..-..-.+......|+.++|++++.+..... +.+...+..+..++...|++++|..++++.++.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34444556677888999999999999998632 3455578999999999999999999999998774 455677788889
Q ss_pred HHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhh
Q 038550 102 MYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 177 (423)
++...|++++|...+ ...+.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHH
Confidence 999999999999999 33455666 8889999999999999999999999864 33555666777788888899999
Q ss_pred hHHHHHHHHhccCcch------HHHHHHHHHHH-----hcCCH---HHHHHHhccCCC---CChh---hH----HHHHHH
Q 038550 178 KEIHGVTIRKHLHTHL------FVANSILDFYT-----RSGRI---DLANKIFDCLPV---KDSA---SW----NTLILG 233 (423)
Q Consensus 178 ~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~---~~~~---~~----~~li~~ 233 (423)
...++.+.. .|+. .....++.... ..+++ ++|++.++.+.. .++. .+ ...+..
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 988876554 1111 01112222222 22234 677777776651 1211 11 111334
Q ss_pred HhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCC
Q 038550 234 YGMLGEVDTAINLFEAMREDGVG-YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMHYACMVDLLGRAGL 309 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 309 (423)
+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+++....... .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 56779999999999999987532 332 22335678999999999999999988653111 12446667778899999
Q ss_pred hHHHHHHHhhC-CCCC-------------C---HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 310 MEDAVKLIKNL-PVEP-------------D---ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 310 ~~~a~~~~~~~-~~~~-------------~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
+++|.+.++++ ...| + ...+..+...+...|+.++|+.+++++....|.++..+..++..+..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999887 2223 2 12445667788999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhccccCCC
Q 038550 373 AGKWDEASKVRELMKSREAKKNP 395 (423)
Q Consensus 373 ~g~~~~A~~~~~~m~~~~~~~~~ 395 (423)
.|++++|++.+++..+.. |+.
T Consensus 406 ~g~~~~A~~~l~~al~l~--Pd~ 426 (765)
T PRK10049 406 RGWPRAAENELKKAEVLE--PRN 426 (765)
T ss_pred cCCHHHHHHHHHHHHhhC--CCC
Confidence 999999999999988754 554
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=2.2e-15 Score=147.38 Aligned_cols=375 Identities=10% Similarity=-0.011 Sum_probs=254.4
Q ss_pred chhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCC-CCchhHHHH-----------------------
Q 038550 9 AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNV----------------------- 64 (423)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l----------------------- 64 (423)
++|..+++...+.+...+..+...+.+.|+.++|.++++++...... |...+|.-+
T Consensus 233 ~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~ 312 (987)
T PRK09782 233 DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNR 312 (987)
T ss_pred HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHH
Confidence 66666666544467778888888888888888888888887654222 332222221
Q ss_pred -------HHHhhcCCCCccHHHH-----------------------------HHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 038550 65 -------LPACARGHFLRPGKEI-----------------------------HARIIRKGLNFDLFLTNALTDMYAKCGC 108 (423)
Q Consensus 65 -------~~~~~~~~~~~~a~~~-----------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 108 (423)
+..+.+.++++.++++ ++.|.+.. +-+....--+.-.....|+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 313 QYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccc
Confidence 1222233333322222 22222110 1122222233334566788
Q ss_pred hHHHHHHhch-h--cCC----cchHHHHHHHHhcCCC---hhhHHHH----------------------HHHHHhc-CC-
Q 038550 109 LNLAQNVFNI-S--FRD----EVSYNILIVGYSQTSD---CSESLSL----------------------FSEMRLL-GM- 154 (423)
Q Consensus 109 ~~~a~~~~~~-~--~~~----~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~m~~~-~~- 154 (423)
.++|.++|+. . .++ .....-++..|.+.+. ..++..+ +...... +.
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 8888888821 1 122 2234466677766655 2333222 1111111 11
Q ss_pred CC--chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC--CChhhHHHH
Q 038550 155 KH--DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNTL 230 (423)
Q Consensus 155 ~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l 230 (423)
++ +...|..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~l 548 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAA 548 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHH
Confidence 33 45667777766665 78888999887777654 3443333445556789999999999987652 444556677
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+. .|+...+..+..++.+.|++
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCH
Confidence 788889999999999999998764 223334444444555679999999999999885 46788888999999999999
Q ss_pred HHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 311 EDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 311 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
++|+..+++. ...| +...++.+..++...|+.++|+..++++.+..|.++.++..++.++...|++++|+..+++..+
T Consensus 626 deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 626 PAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999988 5666 5667888888999999999999999999999999999999999999999999999999999876
Q ss_pred cc
Q 038550 389 RE 390 (423)
Q Consensus 389 ~~ 390 (423)
..
T Consensus 706 l~ 707 (987)
T PRK09782 706 DI 707 (987)
T ss_pred cC
Confidence 54
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=1.5e-15 Score=148.48 Aligned_cols=376 Identities=10% Similarity=-0.032 Sum_probs=274.6
Q ss_pred cccCCcchhHHhhcccCCcChhhHHHHHHHH--HhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHH
Q 038550 3 AKSSRPAEASYLFHNIAEKNIVSWNAMVANF--AQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 80 (423)
.+.++++-|.++.+.- |.... ..++.. ...+...++...+..|.+.. +-+......+.-...+.|+.++|.++
T Consensus 324 ~~~~~~~~~~~~~~~~--~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~ 398 (987)
T PRK09782 324 LKEGQYDAAQKLLATL--PANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADL 398 (987)
T ss_pred HhccHHHHHHHHhcCC--CcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 4566777666664422 22222 223222 23366667777777776642 22555555555566778888888888
Q ss_pred HHHHHHc-C-CCCchHHHHHHHHHHHhcCC---hHHHHHH-------------------------h----chhcC--Ccc
Q 038550 81 HARIIRK-G-LNFDLFLTNALTDMYAKCGC---LNLAQNV-------------------------F----NISFR--DEV 124 (423)
Q Consensus 81 ~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~a~~~-------------------------~----~~~~~--~~~ 124 (423)
++..... + -.++....+.|+..|.+.+. ..++..+ + ...++ +..
T Consensus 399 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~ 478 (987)
T PRK09782 399 LLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAA 478 (987)
T ss_pred HHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHH
Confidence 8887652 1 12344455566777766655 2222222 1 11233 566
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHH
Q 038550 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204 (423)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (423)
.|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...++.+.... |+...+..+..++.
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all 553 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQ 553 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHH
Confidence 78888888877 7888899988888764 4665554455556678999999999999876653 33344556778889
Q ss_pred hcCCHHHHHHHhccCCCCCh---hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 038550 205 RSGRIDLANKIFDCLPVKDS---ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281 (423)
Q Consensus 205 ~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 281 (423)
+.|++++|...++.....++ ..+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999987764333 23333334444569999999999999885 56788899999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
+++..... +.+...++.+...+...|++++|+..+++. ...| +...+..+..++...|++++|+..++++.+..|.+
T Consensus 632 l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 632 LRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 99999874 456778888888999999999999999987 5566 67789999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
..+....+....+..+++.|.+.+++-...++
T Consensus 711 a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 711 ALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999998888765443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=8.7e-15 Score=140.44 Aligned_cols=354 Identities=12% Similarity=0.040 Sum_probs=265.9
Q ss_pred HHHHHhCCChHHHHHHHhhchhCCCCCCch-hHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 038550 30 VANFAQNRLELKALQLVREMPIHNEFPNSV-TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108 (423)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 108 (423)
+-...+.|+++.|++.|++..+.. |+.. ....++..+...|+.++|...+++..... +........+...+...|+
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 335678999999999999998764 5542 22388888888999999999999998211 2223333444668888999
Q ss_pred hHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHH
Q 038550 109 LNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184 (423)
Q Consensus 109 ~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 184 (423)
+++|+++| +..+.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++++
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999 444567777888899999999999999999999875 566666644444444456665699999999
Q ss_pred HHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC--------------------------------------------
Q 038550 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-------------------------------------------- 220 (423)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------------------------------------- 220 (423)
.+..+ .+...+..++.++.+.|-...|.++...-+
T Consensus 196 l~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 196 VRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 98764 344455556666666666555555444221
Q ss_pred ----C-----CCh-hh----HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 221 ----V-----KDS-AS----WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 221 ----~-----~~~-~~----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
. |.. .. .--.+-++...|++.+++..++.+...+.+.-..+-..+..+|...+++++|..+|+.+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 0 110 11 112345677889999999999999988865455688899999999999999999999997
Q ss_pred HcC-----CCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC-C-------------CCH--h-HHHHHHHHHHhcCChhH
Q 038550 287 ADS-----VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV-E-------------PDA--N-IWGALLGACRIYGNVEL 344 (423)
Q Consensus 287 ~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-------------~~~--~-~~~~l~~~~~~~~~~~~ 344 (423)
... .+++......|.-+|...+++++|..+++++.- . ||+ . ....++..+...|+..+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 652 122344457888999999999999999988821 1 222 1 23445677889999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 345 GAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 345 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
|++.++.+....|.|+.+...++..+...|.+.+|++.++.....
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999776654
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=3e-15 Score=126.30 Aligned_cols=347 Identities=15% Similarity=0.112 Sum_probs=199.3
Q ss_pred HhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCc
Q 038550 13 YLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD 92 (423)
Q Consensus 13 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 92 (423)
-+|+..| ++..+|..||.++++-...+.|.+++++......+.+..+||.+|.+-.- ....+++.+|....+.||
T Consensus 198 L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 198 LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCc
Confidence 3444444 56688999999999999999999999999888888999999999987532 233889999999999999
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHh
Q 038550 93 LFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172 (423)
Q Consensus 93 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 172 (423)
..|+|+++++..+.|+++.|... |++++.+|++.|+.|...+|..+|..+++.+
T Consensus 273 l~TfNalL~c~akfg~F~~ar~a--------------------------alqil~EmKeiGVePsLsSyh~iik~f~re~ 326 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKA--------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFKRES 326 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHH--------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhcccC
Confidence 99999999999999998887644 4555556666666666666665555555555
Q ss_pred hHHh-hhHHHHHHHH----hcc----CcchHHHHHHHHHHHhcCCHHHHHHHhccCCC--------CC---hhhHHHHHH
Q 038550 173 AIKQ-GKEIHGVTIR----KHL----HTHLFVANSILDFYTRSGRIDLANKIFDCLPV--------KD---SASWNTLIL 232 (423)
Q Consensus 173 ~~~~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~---~~~~~~li~ 232 (423)
+..+ +..++..+.. ... +.+...|..-+..|.+..+.+-|.++-.-+.. ++ ..-|..+..
T Consensus 327 dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~ 406 (625)
T KOG4422|consen 327 DPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFD 406 (625)
T ss_pred CchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHH
Confidence 4433 2233333322 111 11233344445555555555555544432221 11 122344445
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-Ch-
Q 038550 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG-LM- 310 (423)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~- 310 (423)
..|.....+.-..+|+.|.-.-+-|+..+...++.+....+.++-.-+++..++..|...+...-..++..+++.. ++
T Consensus 407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~ 486 (625)
T KOG4422|consen 407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPL 486 (625)
T ss_pred HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCC
Confidence 5555555555666666655554555555555566665555555555555555555554333333333333333332 11
Q ss_pred -------H-----HHHHHH-------hhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCcch--HHH
Q 038550 311 -------E-----DAVKLI-------KNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQHCGY--YIL 365 (423)
Q Consensus 311 -------~-----~a~~~~-------~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~--~~~ 365 (423)
. -|..++ .++ ..+......+.+.-.+.+.|..++|-+++....+.+ |..|.. ..-
T Consensus 487 tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 487 TPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 0 001111 111 123344455555555666666666666666664432 332221 223
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 366 LSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+.+.-.+.+....|..+++-|...+
T Consensus 567 l~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 567 LMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 3344445556666666666665444
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=5.7e-15 Score=135.53 Aligned_cols=317 Identities=16% Similarity=0.145 Sum_probs=253.7
Q ss_pred hhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHH
Q 038550 68 CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESL 143 (423)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~ 143 (423)
+.-.|++++|.+++.++++.. +.....|..|..+|-..|+.+++...+ ...+.|...|..+.....+.|.++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 334499999999999999886 667788999999999999999998887 566778889999999999999999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHH----HHHHHHHhcCCHHHHHHHhccC
Q 038550 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN----SILDFYTRSGRIDLANKIFDCL 219 (423)
Q Consensus 144 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~ 219 (423)
-.|.+..+.. +++...+..-...|.+.|+...|...+.++....++.+..-+. ..++.|...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999875 6666666777888889999999999999998876644444333 3456677777778888888766
Q ss_pred CC-----CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC---------------------------CCCCHHHHHHHHH
Q 038550 220 PV-----KDSASWNTLILGYGMLGEVDTAINLFEAMREDG---------------------------VGYDPVSYIAILT 267 (423)
Q Consensus 220 ~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------------------------~~p~~~~~~~ll~ 267 (423)
.. -+...++.++..+.+...++.|......+.... +.++... ..+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 53 245678888888999999999998888876621 1222222 12333
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChHHHHHHHhhCCC---CCCHhHHHHHHHHHHhcCCh
Q 038550 268 ACSHGGLVEKGKKYFDEMQADSVK--PTEMHYACMVDLLGRAGLMEDAVKLIKNLPV---EPDANIWGALLGACRIYGNV 342 (423)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 342 (423)
++.+.+..+....+...+....+. -+...|.-+..+|...|++.+|+.+|..+-. ..+...|-.+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 455666666666666666666533 3466788899999999999999999999822 23577899999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 343 ELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 343 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+.|+..|+.++...|++..+...|...+.+.|+.++|.+.+..+.
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999886
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=3.1e-15 Score=138.19 Aligned_cols=378 Identities=13% Similarity=0.076 Sum_probs=175.2
Q ss_pred cCCcchhHHhhcccCCcC------hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhH--HHHHHHhhcCCCCcc
Q 038550 5 SSRPAEASYLFHNIAEKN------IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL--TNVLPACARGHFLRP 76 (423)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~ 76 (423)
.|+++.++.+.+.+.+.+ ..+|-.+.++|-..|++++|...|.+..+.. |+..++ .-+.+.+.+.|+++.
T Consensus 283 K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~ 360 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEE 360 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHH
Confidence 355555555555544311 2345556666666666666666665555432 333322 234555666666666
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcC----ChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHH
Q 038550 77 GKEIHARIIRKGLNFDLFLTNALTDMYAKCG----CLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148 (423)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 148 (423)
+...|+...... +.+..+...|...|+..+ ..+.|..++ ...+.|...|-.+...+-...-+.. +.+|..
T Consensus 361 s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~ 438 (1018)
T KOG2002|consen 361 SKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGN 438 (1018)
T ss_pred HHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHH
Confidence 666666666552 334455555555555553 334444444 2223355555555555544433333 444443
Q ss_pred HH----hcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHh---ccCcch------HHHHHHHHHHHhcCCHHHHHHH
Q 038550 149 MR----LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK---HLHTHL------FVANSILDFYTRSGRIDLANKI 215 (423)
Q Consensus 149 m~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~A~~~ 215 (423)
.. ..+-.+.+...|.+.......|+++.|...|...... ...++. .+--.+..++-..++.+.|.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 32 3333455556666666666666666666666655543 111111 1111233444444555555555
Q ss_pred hccCCCCCh---hhHHHHHHHHhccCCHHHHHHHHHHHHHcC-C----------------------------------CC
Q 038550 216 FDCLPVKDS---ASWNTLILGYGMLGEVDTAINLFEAMREDG-V----------------------------------GY 257 (423)
Q Consensus 216 ~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~----------------------------------~p 257 (423)
|..+.+..+ ..|.-++......+...+|..++.+..... - .+
T Consensus 519 Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~ 598 (1018)
T KOG2002|consen 519 YKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKT 598 (1018)
T ss_pred HHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCC
Confidence 554442111 111111111111234444444444443321 1 12
Q ss_pred CHHHHHHHHHHHhc------------cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC--CC
Q 038550 258 DPVSYIAILTACSH------------GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP--VE 323 (423)
Q Consensus 258 ~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~ 323 (423)
|..+...|.+.|.. .+..++|.++|.+.++.. +-|...-|.+.-+++..|++.+|..+|.+.. ..
T Consensus 599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 22233333332221 122344455555444432 3344444444555555555555555555441 12
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLK--PQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
-...+|..+.+.|...|++..|+++|+...+.. ..++.+...|++++.+.|.+.+|.+.+....
T Consensus 678 ~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 678 DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 233444455555555555555555555554432 2233444455555555555555555444443
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=3.8e-15 Score=125.64 Aligned_cols=352 Identities=17% Similarity=0.179 Sum_probs=236.0
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHh--hcCCCCccH-HHHHHHHHHcCCCCchHHHHHH
Q 038550 23 IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC--ARGHFLRPG-KEIHARIIRKGLNFDLFLTNAL 99 (423)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~--~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 99 (423)
+.+=|.|+.. ..+|.+..+.-+++.|.+.|++.+...-..++... ....++.-+ ++.|-.|...| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 4455555543 55677888888888888888777766655555442 222222222 22333344333 2233333
Q ss_pred HHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhH
Q 038550 100 TDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179 (423)
Q Consensus 100 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 179 (423)
+.|.+.+ -+|+..++...+|.+||.++|+-...+.|.+++++-.....+.+..+||.+|.+-+-. ...+
T Consensus 191 -----K~G~vAd--L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~ 259 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKK 259 (625)
T ss_pred -----ccccHHH--HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHH
Confidence 3455444 3447778888899999999999888899999998888877788888888888765432 2267
Q ss_pred HHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 038550 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259 (423)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 259 (423)
++.+|.+..+.|+..|+|+++.+..+.|+++.|. ..|.+++.+|++.|+.|..
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar---------------------------~aalqil~EmKeiGVePsL 312 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDAR---------------------------KAALQILGEMKEIGVEPSL 312 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhCCCcch
Confidence 7888888888888888888888877777776553 3456788888888888888
Q ss_pred HHHHHHHHHHhccCcHHH-HHHHHHHHHHc----CCCC----ChhhHHHHHHHHHhcCChHHHHHHHhhC--C-----CC
Q 038550 260 VSYIAILTACSHGGLVEK-GKKYFDEMQAD----SVKP----TEMHYACMVDLLGRAGLMEDAVKLIKNL--P-----VE 323 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~-----~~ 323 (423)
.+|..+|..+++.++..+ +..++.++... .++| +...|..-+..|.+..+.+-|.++-.-+ | +.
T Consensus 313 sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig 392 (625)
T KOG4422|consen 313 SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIG 392 (625)
T ss_pred hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcC
Confidence 888888888888777643 44444444432 2222 3344556667777777877777765433 1 22
Q ss_pred CC---HhHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCcc
Q 038550 324 PD---ANIWGALLGACRIYGNVELGAWAAEHLFML-KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSW 399 (423)
Q Consensus 324 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 399 (423)
|+ ..-|..+....++....+.-...|+.+.-. --+++.+...+.++....|+++-.-+++.+++..|... .
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~-----r 467 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF-----R 467 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh-----h
Confidence 32 223555666667777777777777776542 23456677777788888888888888898888877532 2
Q ss_pred cccccceeeeeecCCCCCCCCCC
Q 038550 400 VQTRDEVQDFVVNDRMKTFTPGP 422 (423)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~ 422 (423)
..+..++.....++..||.|++.
T Consensus 468 ~~l~eeil~~L~~~k~hp~tp~r 490 (625)
T KOG4422|consen 468 SDLREEILMLLARDKLHPLTPER 490 (625)
T ss_pred HHHHHHHHHHHhcCCCCCCChHH
Confidence 44566677778888888888764
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=2.8e-15 Score=127.42 Aligned_cols=369 Identities=13% Similarity=0.061 Sum_probs=254.2
Q ss_pred ccccCCcchhHHhhcccCC--cC------hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCC
Q 038550 2 YAKSSRPAEASYLFHNIAE--KN------IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~--~~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 73 (423)
+.|...+..|+++++-... |+ +...+.+.-.+.+.|.++.|+..|+...+. .|+-.+-..|+-++.--|+
T Consensus 247 ~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d 324 (840)
T KOG2003|consen 247 HFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGD 324 (840)
T ss_pred eeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCc
Confidence 3566778888887765432 22 335566666788999999999999988875 3777665555555566788
Q ss_pred CccHHHHHHHHHHcCCC------------CchHHHHHHH-----HHHHhcCChHHHHHHh----chhcC----Ccch---
Q 038550 74 LRPGKEIHARIIRKGLN------------FDLFLTNALT-----DMYAKCGCLNLAQNVF----NISFR----DEVS--- 125 (423)
Q Consensus 74 ~~~a~~~~~~~~~~~~~------------~~~~~~~~l~-----~~~~~~g~~~~a~~~~----~~~~~----~~~~--- 125 (423)
.++..+.|..|+..... |+....+..+ .-+-+.+ -..|++.. ....| +-..
T Consensus 325 ~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g~d 403 (840)
T KOG2003|consen 325 AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAGCD 403 (840)
T ss_pred HHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcccH
Confidence 88999999988765332 2322222222 1121111 11222222 22211 1100
Q ss_pred H----------H--------HHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHH--------------------
Q 038550 126 Y----------N--------ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA-------------------- 167 (423)
Q Consensus 126 ~----------~--------~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-------------------- 167 (423)
| . .-...+.+.|+++.|+++++-+.+..-+.-+..-+.+...
T Consensus 404 wcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al 483 (840)
T KOG2003|consen 404 WCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL 483 (840)
T ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh
Confidence 1 0 1134578899999999998877654322222221111111
Q ss_pred ----------------HHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHH
Q 038550 168 ----------------CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWN 228 (423)
Q Consensus 168 ----------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 228 (423)
....|++++|...+.+.+.....-....|| +.-.+-..|++++|++.|-++. ..+..+..
T Consensus 484 n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~ 562 (840)
T KOG2003|consen 484 NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLV 562 (840)
T ss_pred cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 112467777777777777665544444454 3344667788888888886553 45677777
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038550 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308 (423)
Q Consensus 229 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (423)
.+...|-...++.+|++++-+.... ++.|+.....|...|-+.|+-.+|.+.+-+--+. ++-+..+...|...|....
T Consensus 563 qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhH
Confidence 7788888888899999888776654 4557888999999999999999999887665443 6778899999999999999
Q ss_pred ChHHHHHHHhhC-CCCCCHhHHHHHHHH-HHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 309 LMEDAVKLIKNL-PVEPDANIWGALLGA-CRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 309 ~~~~a~~~~~~~-~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
-+++++.+|++. -+.|+..-|..++.. +.+.|++++|.++|+...+..|.+......|++.+...|..
T Consensus 641 f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 641 FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999999999998 578999999998865 46789999999999999999999999999999988877753
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=1.5e-17 Score=143.36 Aligned_cols=257 Identities=17% Similarity=0.137 Sum_probs=114.0
Q ss_pred HHHHHhcCCChhhHHHHHHHHHhcCCCCchhhH-HHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcC
Q 038550 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF-MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207 (423)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 207 (423)
+...+.+.|++++|++++++.....-+|+...| ..+...+...++.+.|...++.+...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 355666677777777777554433213433333 33444455667777777777777765433 44455556665 6778
Q ss_pred CHHHHHHHhccCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 038550 208 RIDLANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDE 284 (423)
Q Consensus 208 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 284 (423)
++++|.++++..- .+++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888776653 3456667778888899999999999999987543 345777888888999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
..+.. |.|......++..+...|+.+++.++++.. ....|+..+..+..++...|+.++|...+++..+..|.|+..
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 99874 445778888999999999999988888776 223466788899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 363 YILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
...++.++...|+.++|.++.++...
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999887653
No 31
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=8.2e-14 Score=119.63 Aligned_cols=216 Identities=16% Similarity=0.114 Sum_probs=176.1
Q ss_pred HhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHH
Q 038550 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAIN 245 (423)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~ 245 (423)
.-.|+.-.+..-|+..++....++. .|-.+..+|....+.++-...|.... +.++.+|..-.+.+.-.++++.|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3457778888888888887655543 26667788999999999999998665 4577888888888888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC
Q 038550 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP 324 (423)
Q Consensus 246 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~ 324 (423)
=|++.+..... +...|..+..+..+.+++++++..|++.+++ +|-.+.+|+.....+...++++.|.+.|+.. .+.|
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99999885322 5567777777888999999999999999987 6777899999999999999999999999876 3333
Q ss_pred C---------HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 325 D---------ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 325 ~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
. +.+...++.. .-.+++..|+.+++++.+++|....++..|+....+.|+.++|+++|++-..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 2233333322 2448999999999999999999999999999999999999999999998643
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.3e-12 Score=111.91 Aligned_cols=383 Identities=12% Similarity=0.072 Sum_probs=293.5
Q ss_pred cCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCc-hhHHHHHHHhhcCCCCccHHHH
Q 038550 5 SSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS-VTLTNVLPACARGHFLRPGKEI 80 (423)
Q Consensus 5 ~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~ 80 (423)
++++..|.++|++... .+...|-.-+..=.++..+..|..+|+..... -|.+ ..|-..+..=-..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4567889999999876 67778888889999999999999999998764 3443 3444555555567999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh---chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCc
Q 038550 81 HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 157 (423)
|+.-.+- .|+...|++.++.-.+-+.++.|..++ -+..|++.+|--....=.+.|....+..+|....+. -.|
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 9988755 899999999999999999999999999 456789999999999999999999999999988763 222
Q ss_pred hh----hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc-hHHHHHHHHHHHhcCCHHHHHHHh---c-----cCCC---
Q 038550 158 VV----SFMGAISACANLAAIKQGKEIHGVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIF---D-----CLPV--- 221 (423)
Q Consensus 158 ~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~---~-----~~~~--- 221 (423)
.. .+.+....-.+...++.|.-+|+..+..-+... ...|......--+-|+.....+.. + .+..
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 22 333333333456788889999988887543322 445555555555556655444433 2 2222
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---hccCcHHHHHHHHHHHHHcCCC
Q 038550 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP-------VSYIAILTAC---SHGGLVEKGKKYFDEMQADSVK 291 (423)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~ 291 (423)
-|-.+|--.+..-...|+.+...++|++.... ++|-. ..|..+=-+| ....+.+.+.++|+..++. +|
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 25567777777777889999999999999875 55532 1222222222 3467899999999999985 66
Q ss_pred CChhhHHHHHHHH----HhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 292 PTEMHYACMVDLL----GRAGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 292 ~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
....||..+--.| .++.++..|.+++... |..|-..+|...|..-.+.+.++....+|++.++.+|.+..+|...
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 6777777765555 4788999999999877 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccccCCC
Q 038550 367 SNMYAEAGKWDEASKVRELMKSREAKKNP 395 (423)
Q Consensus 367 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 395 (423)
+..-...|+.+.|..+|+-..+....-.|
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 98888999999999999888776543333
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=6.3e-13 Score=119.89 Aligned_cols=246 Identities=11% Similarity=0.016 Sum_probs=124.5
Q ss_pred hcCCChhhHHHHHHHHHhcCCCCchhhHH--HHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHH
Q 038550 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFM--GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 211 (423)
.+.|+++.|...+.++.+. .|+...+. .....+...|+++.|...++.+.+..+ .+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHH
Confidence 4444444444444444431 23322111 112333444444444444444444332 123333444444444455555
Q ss_pred HHHHhccCCCC---Ch--------hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 038550 212 ANKIFDCLPVK---DS--------ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280 (423)
Q Consensus 212 A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 280 (423)
|.+++..+.+. +. .+|..++.......+.+...++++.+.+. .+.++.....+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 54444443321 11 12222233333334445555555554332 23355566666666777777777777
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
++++..+. +|+.... ++.+....++.+++++..++. ...| |+..+..+...+...+++++|.+.|+.+.+..|+
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 77666653 3333211 223333446666676666665 3344 4445666666777777777777777777776666
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 359 HCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
+ ..+..++.++.+.|+.++|.+++++-..
T Consensus 361 ~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 361 A-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 3345666677777777777777765543
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=4.1e-12 Score=113.14 Aligned_cols=371 Identities=9% Similarity=0.034 Sum_probs=290.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 038550 25 SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104 (423)
Q Consensus 25 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (423)
+|+.-...|.+.+.++-|..+|...++. .+-+...|......--..|..++...++++++..- +-....|-....-+.
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 4555556666677777777777776664 23344566666666666788888888888888763 334455666667777
Q ss_pred hcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHH
Q 038550 105 KCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180 (423)
Q Consensus 105 ~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 180 (423)
..|++..|..++ +..+.+...|-.-+..-....+++.|..+|.+... ..|+...|..-+...--.+..++|.++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 889999998887 44456777888888888899999999999988876 456777776666666677889999999
Q ss_pred HHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 038550 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257 (423)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 257 (423)
+++.++.- +.-...|-.+.+.+-+.++.+.|...|..-. +..+..|-.+...=-+.|++-+|..++++.+-.+..
T Consensus 674 lEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk- 751 (913)
T KOG0495|consen 674 LEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK- 751 (913)
T ss_pred HHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-
Confidence 98887763 2335566777888888999999998887654 235567888877777888999999999998877543
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 337 (423)
+...|...|..-.+.|..+.|..++.+..+. ++-+...|..-|....+.++-.+..+.+++. ..|+.+...+...+.
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw 828 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFW 828 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHH
Confidence 7788999999999999999999999888875 5667778888888888888877777777776 356677777888889
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCcccccccce
Q 038550 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEV 406 (423)
Q Consensus 338 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 406 (423)
...+++.|.+-|++++..+|++..+|..+...+.+.|.-++-.+++.+.... .|.-+..|..++..+
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKDI 895 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhhH
Confidence 9999999999999999999999999999999999999999999999988764 577788888776554
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=1.9e-13 Score=123.21 Aligned_cols=278 Identities=12% Similarity=-0.009 Sum_probs=201.3
Q ss_pred CCCCccHHHHHHHHHHcCCCCchHHHHHH-HHHHHhcCChHHHHHHh-c--hhcCCcchHH--HHHHHHhcCCChhhHHH
Q 038550 71 GHFLRPGKEIHARIIRKGLNFDLFLTNAL-TDMYAKCGCLNLAQNVF-N--ISFRDEVSYN--ILIVGYSQTSDCSESLS 144 (423)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~-~--~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 144 (423)
.|+++.|.+.+....+.. +++..+..+ .....+.|+++.|...+ + ...|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 577777776666554432 223333223 33346777777777777 2 1223332222 23567777888888888
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcch-------HHHHHHHHHHHhcCCHHHHHHHhc
Q 038550 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL-------FVANSILDFYTRSGRIDLANKIFD 217 (423)
Q Consensus 145 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 217 (423)
.++++.+.. +-+......+...+.+.|++++|..++..+.+.+..++. ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887764 445667777788888888888888888888876654322 233344444455566777888888
Q ss_pred cCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh
Q 038550 218 CLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294 (423)
Q Consensus 218 ~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 294 (423)
.++ +.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+...+.. +-|.
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 776 347788889999999999999999999998874 4555322 2344456699999999999998873 5566
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 356 (423)
..+..+...+.+.+++++|.+.|++. ...|+...+..+...+.+.|+.++|..++++...+-
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 77888999999999999999999988 778999999999999999999999999999987653
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=9e-13 Score=107.60 Aligned_cols=312 Identities=10% Similarity=0.078 Sum_probs=205.3
Q ss_pred CCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chhc-CCc------chHHHHHHHHhcCCChhhHH
Q 038550 72 HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF-RDE------VSYNILIVGYSQTSDCSESL 143 (423)
Q Consensus 72 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~-~~~------~~~~~l~~~~~~~~~~~~a~ 143 (423)
++.++|...|-+|.+.. +-+..+.-+|.+.|-+.|.+|.|+++- .... ||. .+.-.|..-|...|-+|.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45667777777776543 333445556666666667777666666 2222 221 12234555666677777777
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCC
Q 038550 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223 (423)
Q Consensus 144 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 223 (423)
.+|..+.+.| ..-......++..|....+|++|+.+-+++.+.+..+... -+...
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAqf--------------------- 182 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQF--------------------- 182 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHHH---------------------
Confidence 7777776544 2233455566666666666666666666666554433221 12222
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038550 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (423)
|-.+...+....+.+.|..++.+..+.+.+ .+..-..+.......|+++.|.+.++...+.+..--..+...|..+
T Consensus 183 ---yCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 183 ---YCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred ---HHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 333455556667888888888888876432 3344455566788889999999999988887655556778888899
Q ss_pred HHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH---HhcCChhHH
Q 038550 304 LGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY---AEAGKWDEA 379 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A 379 (423)
|...|++++...++.++ ...+....-..+........-.+.|...+.+-....|.-..++ .++... ...|+..+-
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~-rl~~~~l~daeeg~~k~s 337 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH-RLMDYHLADAEEGRAKES 337 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH-HHHHhhhccccccchhhh
Confidence 99999999998888876 4556666666666655566667777777777777777644444 444433 234668888
Q ss_pred HHHHHHHHhccccCCCCCcccccccceeeeeecCC
Q 038550 380 SKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414 (423)
Q Consensus 380 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (423)
...+++|...-++.+|.+.+..++...+.|.=.+.
T Consensus 338 L~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~CP 372 (389)
T COG2956 338 LDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHCP 372 (389)
T ss_pred HHHHHHHHHHHHhhcCCceecccCCcceeeeeeCC
Confidence 89999999999999999999999888777655543
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=1.7e-12 Score=115.58 Aligned_cols=392 Identities=10% Similarity=0.041 Sum_probs=298.3
Q ss_pred ccccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhc----hhCCCCCCchhHHHHHHHhhcCCCC
Q 038550 2 YAKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREM----PIHNEFPNSVTLTNVLPACARGHFL 74 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~~l~~~~~~~~~~ 74 (423)
|++...|+.|.++++...+ .+...|-.-...=-.+|+.+...+++.+- ...|+..+...|-.=...|-..|..
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 4555567777777776654 46777777666667788888887776653 4557788888888888888888888
Q ss_pred ccHHHHHHHHHHcCCCC--chHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHH
Q 038550 75 RPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148 (423)
Q Consensus 75 ~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 148 (423)
-.+..+....+..|++- ...||+.-...|.+.+.++-|..+| +..+.+...|......=-..|..+....++++
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 88888888888777653 3457777788888888888888888 45566777888887777778888999999999
Q ss_pred HHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC--CCChhh
Q 038550 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP--VKDSAS 226 (423)
Q Consensus 149 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~ 226 (423)
....- +-....+.......-..|++..|..++..+.+..+. +...+-.-+.....+.+++.|..+|.+.. .+....
T Consensus 576 av~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv 653 (913)
T KOG0495|consen 576 AVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERV 653 (913)
T ss_pred HHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchh
Confidence 88763 444455555666677789999999999998887654 67777778888889999999999998765 456667
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYD-PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (423)
|.--+...--.++.++|.+++++..+. -|+ ...|..+.+.+-+.++.+.|...|..-.+. ++.....|..|.+.=-
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEE 730 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHH
Confidence 766666666678899999999888875 344 457777888888889999998888766554 3445566777777777
Q ss_pred hcCChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-------------------------
Q 038550 306 RAGLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ------------------------- 358 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------------------- 358 (423)
+.|.+-+|..++++. ...-+...|...|+.-.+.|+.+.|..+..++++.-|.
T Consensus 731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence 888999999999987 32337788999999999999999999888888776555
Q ss_pred -----CcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 359 -----HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 359 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
++......+..|....+++.|++.|.+....+ |+.+-.|.
T Consensus 811 kkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa 855 (913)
T KOG0495|consen 811 KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWA 855 (913)
T ss_pred HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHH
Confidence 34556667777888888899999998887754 45555554
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=6.8e-13 Score=120.31 Aligned_cols=280 Identities=11% Similarity=-0.062 Sum_probs=198.5
Q ss_pred hcCCCCccHHHHHHHHHHcCCCCchH-HHHHHHHHHHhcCChHHHHHHhch---hcCCcc--hHHHHHHHHhcCCChhhH
Q 038550 69 ARGHFLRPGKEIHARIIRKGLNFDLF-LTNALTDMYAKCGCLNLAQNVFNI---SFRDEV--SYNILIVGYSQTSDCSES 142 (423)
Q Consensus 69 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~--~~~~l~~~~~~~~~~~~a 142 (423)
...|+++.|.+.+....+. .|++. .+-....+....|+.+.|.+.+.. ..|+.. ..-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3578888888888776655 34433 333445667777888888888822 223332 333357777888888888
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHH---H----hcCCHHHHHHH
Q 038550 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY---T----RSGRIDLANKI 215 (423)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~~~A~~~ 215 (423)
...++.+.+.. |-+......+...+...|+++.+.+.+..+.+.+..+.......-..++ . .....+...+.
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888865 4456677788888888888888888888888876543332211111111 2 22334455566
Q ss_pred hccCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038550 216 FDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS---YIAILTACSHGGLVEKGKKYFDEMQADS 289 (423)
Q Consensus 216 ~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 289 (423)
++..+. .++..+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 666653 478888999999999999999999999998863 34331 1222223345678888999998888762
Q ss_pred CCCCh--hhHHHHHHHHHhcCChHHHHHHHhh--C-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 290 VKPTE--MHYACMVDLLGRAGLMEDAVKLIKN--L-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 290 ~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
+-|. ....++...+.+.|++++|.+.|++ . ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344 5666889999999999999999994 3 6789999999999999999999999999999865
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=2.6e-12 Score=116.54 Aligned_cols=280 Identities=13% Similarity=-0.011 Sum_probs=200.2
Q ss_pred HHhcCChHHHHHHhchh---cC-CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh--hHHHHHHHHHhHhhHHh
Q 038550 103 YAKCGCLNLAQNVFNIS---FR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV--SFMGAISACANLAAIKQ 176 (423)
Q Consensus 103 ~~~~g~~~~a~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~ 176 (423)
-...|+++.|.+.+... .+ ....+-....+..+.|+.+.|.+.+.+..+. .|+.. ........+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 34689999999999221 22 2334455567788899999999999998764 35443 33345777888999999
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC---ChhhHHH----HHHHHhccCCHHHHHHHHHH
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK---DSASWNT----LILGYGMLGEVDTAINLFEA 249 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~----li~~~~~~g~~~~a~~~~~~ 249 (423)
|...++.+.+..+. +..+...+...+.+.|+++.|.+.+..+.+. +...+.. ........+..+.+.+.+..
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999998743 4466778999999999999999999887732 3333321 11122333333334445555
Q ss_pred HHHcCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhh-HHHHHHH--HHhcCChHHHHHHHhhC-CC
Q 038550 250 MREDGV---GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH-YACMVDL--LGRAGLMEDAVKLIKNL-PV 322 (423)
Q Consensus 250 m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~~~~~~a~~~~~~~-~~ 322 (423)
+.+... +.+...+..+...+...|+.++|.+++++..+.. |+... ...++.. ....++.+.+.+.+++. ..
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 544321 1377888889999999999999999999999863 33321 1012222 23457788888888776 44
Q ss_pred CC-CH--hHHHHHHHHHHhcCChhHHHHHHH--HHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 323 EP-DA--NIWGALLGACRIYGNVELGAWAAE--HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 323 ~~-~~--~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.| |+ ....++...+.+.|++++|.+.|+ ...+..|++.. +..++..+.+.|+.++|.+++++-..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55 34 567788999999999999999999 46667776544 66999999999999999999998644
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.6e-12 Score=109.03 Aligned_cols=257 Identities=11% Similarity=0.089 Sum_probs=197.5
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhcc--CcchHHHHHHHHHHHhcC
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL--HTHLFVANSILDFYTRSG 207 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 207 (423)
..++....+.+++++-.......|++-+...-+....+.....++++|+.+|+++.+..+ -.|..+|+.++-.-..+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 445555667777777777777777655554444455555677888999999998888743 124555555543222211
Q ss_pred CHH-HHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 208 RID-LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 208 ~~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
++. -|..++ .+.+--+.|.-++..-|.-.++.++|...|++..+.+.. ....|+.+..-|...++...|.+-++.++
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 111 122222 222334566667777888889999999999999986432 45678888888999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHH
Q 038550 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364 (423)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 364 (423)
+-. +.|-..|-.|.++|.-.+...-|+-.|++. ..+| |+..|.+|...|.+.++.++|++.|.++...+-.+...+.
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 874 668899999999999999999999999998 6777 7889999999999999999999999999998877888999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 365 LLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 365 ~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.++..|.+.++.++|.+.|++..+.
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999988763
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.2e-13 Score=123.20 Aligned_cols=281 Identities=13% Similarity=0.031 Sum_probs=213.8
Q ss_pred ChHHHHHHhchh----cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcC--CCCchhhHHHHHHHHHhHhhHHhhhHHH
Q 038550 108 CLNLAQNVFNIS----FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAIKQGKEIH 181 (423)
Q Consensus 108 ~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 181 (423)
+..+|...|... .........+..+|...+++++|.++|+...+.. ..-+...|.+.+-.+-+. -+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 456777777222 2233445667889999999999999999988743 112556777777655322 222223
Q ss_pred HHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 038550 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK---DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258 (423)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 258 (423)
.+-+-.--+..+.+|-++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+....+ +
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-h 488 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-H 488 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-h
Confidence 22222223456789999999999999999999999988743 5678888888889999999999999988754211 2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHH
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGAC 336 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 336 (423)
-.+|--+...|.++++++.|+-.|+++.+.+ +-+.+....+...+-+.|+.++|+++++++ ...| |+..--.-+..+
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 3355566777999999999999999999865 456677777888889999999999999998 4444 555544556677
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCC
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 394 (423)
...+++++|+..++++++.-|++...+..++..|-+.|+.+.|+.-|.-+.+...+++
T Consensus 568 ~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 8889999999999999999999999999999999999999999998888877655443
No 42
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.62 E-value=6.7e-12 Score=116.67 Aligned_cols=375 Identities=11% Similarity=0.027 Sum_probs=215.7
Q ss_pred cchhHHhhcccCCcChh-hHHHHHHHH--HhCCChHHHHHHHhhchhCC--CCCCchhHHHHHHHhhcCCCCccHHHHHH
Q 038550 8 PAEASYLFHNIAEKNIV-SWNAMVANF--AQNRLELKALQLVREMPIHN--EFPNSVTLTNVLPACARGHFLRPGKEIHA 82 (423)
Q Consensus 8 ~~~A~~~~~~~~~~~~~-~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 82 (423)
++.|...|..+.+.++. +.-.|..++ ...|++..|+.+|....... .+||+.. .+-.++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 46777777777652211 223344443 45678889999998865442 3444432 33456678888888888888
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhc---CChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCC
Q 038550 83 RIIRKGLNFDLFLTNALTDMYAKC---GCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 155 (423)
..++.+. -++.++-.|...-... ..+..+..++ ...+.|++..+.|...|.-.|++..++.+...+......
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 8887642 2333333333222222 2344455544 445667788888888888888888888888777664311
Q ss_pred --CchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHH
Q 038550 156 --HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTL 230 (423)
Q Consensus 156 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 230 (423)
.-...|-.+.+++-..|++++|..+|.+..+.........+--+...|.+.|+++.+...|+.+. +.+..+...+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 12335667778888888888888888777765544333344456777888888888888887765 2345556666
Q ss_pred HHHHhccC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH----HcCCCCChhhHHHHHH
Q 038550 231 ILGYGMLG----EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ----ADSVKPTEMHYACMVD 302 (423)
Q Consensus 231 i~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~ 302 (423)
...|+..+ ..+.|..++.+..+.- +.|...|..+...+... +...+..+|..+. ..+-++.....|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 66665553 4455666666555542 22555665555554443 3333355444433 2344455666666666
Q ss_pred HHHhcCChHHHHHHHhhC-CC-----CCCH------hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038550 303 LLGRAGLMEDAVKLIKNL-PV-----EPDA------NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~-~~-----~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 370 (423)
.+...|++++|...|+.. +. .+|. .+--.+...+-..++++.|.+.|..+.+..|.-...|..++...
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMA 540 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHH
Confidence 667777777777766655 11 1122 11122233334445555555555555555555555555554333
Q ss_pred HhcCChhHHHHHHHHHH
Q 038550 371 AEAGKWDEASKVRELMK 387 (423)
Q Consensus 371 ~~~g~~~~A~~~~~~m~ 387 (423)
...+...+|...++...
T Consensus 541 ~~k~~~~ea~~~lk~~l 557 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDAL 557 (1018)
T ss_pred HhccCcHHHHHHHHHHH
Confidence 34444455555554443
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=3e-15 Score=128.96 Aligned_cols=249 Identities=15% Similarity=0.147 Sum_probs=102.2
Q ss_pred HHHHHHhcCChHHHHHHh-c---h--hcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHh
Q 038550 99 LTDMYAKCGCLNLAQNVF-N---I--SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172 (423)
Q Consensus 99 l~~~~~~~g~~~~a~~~~-~---~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 172 (423)
+...+.+.|++++|.+++ . . .+.|...|..+.......++++.|.+.++++...+ +-+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 344555566666666666 1 1 12344445555556666777777777777777654 2244555555555 5777
Q ss_pred hHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC-----CCChhhHHHHHHHHhccCCHHHHHHHH
Q 038550 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-----VKDSASWNTLILGYGMLGEVDTAINLF 247 (423)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~ 247 (423)
++++|.++++...+.. ++...+...+..+.+.++++++..+++.+. +.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777776655443 334445667777778888888777776643 346677888888888999999999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-
Q 038550 248 EAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP- 324 (423)
Q Consensus 248 ~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~- 324 (423)
++..+. .| |......++..+...|+.+++..+++...+.. +.+...+..+..+|...|+.++|+..|++. ...|
T Consensus 170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 998886 34 56778888888999999999888888887764 556677788889999999999999999887 3345
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
|+.+...+..++...|+.++|..+.+++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 777888888999999999999988887654
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=4.3e-12 Score=117.03 Aligned_cols=355 Identities=13% Similarity=0.074 Sum_probs=247.1
Q ss_pred HHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHH
Q 038550 33 FAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112 (423)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 112 (423)
....|++++|.+++.+.++.. +.....|.+|...|-+.|+.+++...+-.+-... +-|...|..+.....+.|.++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 334488888888888888764 4466788888888888888888877766555443 45667788888888888888888
Q ss_pred HHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh----hHHHHHHHHHhHhhHHhhhHHHHHH
Q 038550 113 QNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV----SFMGAISACANLAAIKQGKEIHGVT 184 (423)
Q Consensus 113 ~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~ 184 (423)
.-.| +..+++...+-.-...|-+.|+...|..-|.++.....+.|.. ....++..+...++-+.|.+.++..
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8887 3445555555556777888888888888888888754222222 2223344555566667777777776
Q ss_pred HHh-ccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC--------------------------CChhhHH----HHHHH
Q 038550 185 IRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--------------------------KDSASWN----TLILG 233 (423)
Q Consensus 185 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~----~li~~ 233 (423)
.+. +-..+...++.++..|.+...++.|......+.. ++...|. -+.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 662 2334555667788888888888887766654321 1111111 12233
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGY--DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (423)
+...+..+....+.+...+..+.| +...|.-+..+|...|++..|..+|..+.....--+...|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 445555555556666666665444 456888999999999999999999999998743445778999999999999999
Q ss_pred HHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC---------CCcchHHHHHHHHHhcCChhHHH
Q 038550 312 DAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKP---------QHCGYYILLSNMYAEAGKWDEAS 380 (423)
Q Consensus 312 ~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~ 380 (423)
.|.+.|++. ...| +...--+|...+-+.|+.++|.+.++.+...++ ++..........+...|+.++-+
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999988 5556 445666677788899999999999988663332 22334455667788999998877
Q ss_pred HHHHHHHhc
Q 038550 381 KVRELMKSR 389 (423)
Q Consensus 381 ~~~~~m~~~ 389 (423)
.+...|...
T Consensus 547 ~t~~~Lv~~ 555 (895)
T KOG2076|consen 547 NTASTLVDD 555 (895)
T ss_pred HHHHHHHHH
Confidence 776666553
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=5.2e-13 Score=119.16 Aligned_cols=256 Identities=14% Similarity=0.090 Sum_probs=200.3
Q ss_pred ChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhcc--CcchHHHHHHHHHHHhcCCHHH-HHH
Q 038550 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL--HTHLFVANSILDFYTRSGRIDL-ANK 214 (423)
Q Consensus 138 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~-A~~ 214 (423)
+..+|+..|.+..++ +.-+......+..+|...+++++++++|+.+.+..+ -.+..+|.+.+--+-+.-.+.- |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 567899999985554 344556777888999999999999999999988643 2345666666644333222221 222
Q ss_pred HhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 038550 215 IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293 (423)
Q Consensus 215 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 293 (423)
+. .+.+..+.+|-++..+|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+... +-+
T Consensus 413 Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rh 488 (638)
T KOG1126|consen 413 LI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRH 488 (638)
T ss_pred HH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chh
Confidence 22 233457899999999999999999999999999985 34 56788888888888999999999999987532 223
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
-..|-.|...|.+.++++.|+-.|+++ .+.| +.+....+...+.+.|+.++|+.+++++.-++|.++-.-...+..+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 344555678899999999999999998 7788 66677778888999999999999999999999999999888899999
Q ss_pred hcCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 372 EAGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
..+++++|.+.++++++ +.|+.+..+.
T Consensus 569 ~~~~~~eal~~LEeLk~--~vP~es~v~~ 595 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKE--LVPQESSVFA 595 (638)
T ss_pred hhcchHHHHHHHHHHHH--hCcchHHHHH
Confidence 99999999999999987 3455544333
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=1.8e-11 Score=103.05 Aligned_cols=282 Identities=12% Similarity=-0.004 Sum_probs=145.2
Q ss_pred CCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 038550 36 NRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115 (423)
Q Consensus 36 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 115 (423)
.|+|.+|.++..+-.+.+-. ....|..-..+.-+.|+.+.+-.++.+..+....++...+-+........|+++.
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~a---- 171 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPA---- 171 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchh----
Confidence 35555555555554443321 1223333334444555555555555555444223333444444444444454444
Q ss_pred hchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcch--
Q 038550 116 FNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL-- 193 (423)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 193 (423)
|..-+.++.+.+ +-..........+|.+.|++.....++..+.+.+.-.+.
T Consensus 172 --------------------------A~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 172 --------------------------ARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred --------------------------HHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 444444444433 223334444444444444444444444444444432222
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038550 194 -----FVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265 (423)
Q Consensus 194 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 265 (423)
.++..+++-....+..+.-...++..+ +.++..-.+++.-+...|+.++|.++.++..+++..|+. ..
T Consensus 225 ~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~ 300 (400)
T COG3071 225 ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CR 300 (400)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HH
Confidence 233334443333344444444555554 235555566666666777777777777776666554441 11
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhH
Q 038550 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVEL 344 (423)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 344 (423)
.-.+.+-++...-.+..++-.+. .+-++..+.+|...|.+.+.+.+|...|+.. ...|+..+|+.+..++.+.|+..+
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 22345555665555555555544 1233355666666666777777777766655 556666677777777777777776
Q ss_pred HHHHHHHHHh
Q 038550 345 GAWAAEHLFM 354 (423)
Q Consensus 345 a~~~~~~~~~ 354 (423)
|.++.++...
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 6666666653
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=1.2e-11 Score=105.73 Aligned_cols=360 Identities=14% Similarity=0.107 Sum_probs=201.9
Q ss_pred HHHHHHhCCChHHHHHHHhhchhCCCCCCchhHH-HHHHHhhcCCCCccHHHHHHHHHHcCCCCch----HHHHHHHHHH
Q 038550 29 MVANFAQNRLELKALQLVREMPIHNEFPNSVTLT-NVLPACARGHFLRPGKEIHARIIRKGLNFDL----FLTNALTDMY 103 (423)
Q Consensus 29 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~ 103 (423)
|..-|..+..+.+|+..++-+.+...-|+.-.+. .+...+.+.+.+.+|+++|+..+..-...+. ...+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 4455666777888888888887776667765443 3445677788888888888877765322222 2344455557
Q ss_pred HhcCChHHHHHHh---chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh--------hHHHHHHH-----
Q 038550 104 AKCGCLNLAQNVF---NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV--------SFMGAISA----- 167 (423)
Q Consensus 104 ~~~g~~~~a~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--------~~~~ll~~----- 167 (423)
.+.|.+++|+..| -...|+..+-..|+-++...|+-++..+.|.+|......||.. .-..++.-
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 7888888888888 2234555554455556666788888888888886643222211 11112211
Q ss_pred --------------------------------------------------------------HHhHhhHHhhhHHHHHHH
Q 038550 168 --------------------------------------------------------------CANLAAIKQGKEIHGVTI 185 (423)
Q Consensus 168 --------------------------------------------------------------~~~~~~~~~a~~~~~~~~ 185 (423)
+.+.|+++.|.++++...
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 122233333333333332
Q ss_pred HhccCcchHHHHHHHH-HH-----------------------------------HhcCCHHHHHHHhccCCCCChhhHHH
Q 038550 186 RKHLHTHLFVANSILD-FY-----------------------------------TRSGRIDLANKIFDCLPVKDSASWNT 229 (423)
Q Consensus 186 ~~~~~~~~~~~~~l~~-~~-----------------------------------~~~~~~~~A~~~~~~~~~~~~~~~~~ 229 (423)
+.........-+.|-. -| ...|++++|.+.|++....|...-.+
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 2211110000000000 00 01123333333333333222221111
Q ss_pred H---HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038550 230 L---ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306 (423)
Q Consensus 230 l---i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (423)
| ...+-..|+.++|++.|-++... +.-+......+...|....+..+|++++.+.... ++.|+.....|...|-+
T Consensus 527 lfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 527 LFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhc
Confidence 1 11223334444444444443321 1123344444555555555666666666555443 45567777778888888
Q ss_pred cCChHHHHHHHhh-CCCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 038550 307 AGLMEDAVKLIKN-LPVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384 (423)
Q Consensus 307 ~~~~~~a~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 384 (423)
.|+-..|++.+-. ...-| +..+..-|...|....-+++++.+|+++.-+.|....-...++.++.+.|++..|.++|+
T Consensus 605 egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 8888888776433 34334 666666677777777778889999999888888755555556677889999999999999
Q ss_pred HHHhcc
Q 038550 385 LMKSRE 390 (423)
Q Consensus 385 ~m~~~~ 390 (423)
+...+-
T Consensus 685 ~~hrkf 690 (840)
T KOG2003|consen 685 DIHRKF 690 (840)
T ss_pred HHHHhC
Confidence 887653
No 48
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=3.9e-12 Score=116.92 Aligned_cols=251 Identities=15% Similarity=0.065 Sum_probs=165.3
Q ss_pred HHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhcCCc
Q 038550 44 QLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDE 123 (423)
Q Consensus 44 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 123 (423)
.++-.+...|+.|+..||..+|..||..|+++.|- +|..|.-...+.+...++.++.+...+++.+.+. .|..
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------ep~a 83 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------EPLA 83 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------CCch
Confidence 34555666777787788888887788888877777 7777776666777777777777777777776664 5566
Q ss_pred chHHHHHHHHhcCCChhhHHHHHHH-HH-------hcCCCCchh--------------hHHHHHHHHHhHhhHHhhhHHH
Q 038550 124 VSYNILIVGYSQTSDCSESLSLFSE-MR-------LLGMKHDVV--------------SFMGAISACANLAAIKQGKEIH 181 (423)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~-m~-------~~~~~~~~~--------------~~~~ll~~~~~~~~~~~a~~~~ 181 (423)
.+|..|..+|...||... ++..++ |. ..|+-.... .-...+......|.++.+.+++
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888877777544 222222 21 122111111 1112233334455566665555
Q ss_pred HHHHHhc-cCcchHHHHHHHHHHH-hcCCHHHHHHHhccCC-CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 038550 182 GVTIRKH-LHTHLFVANSILDFYT-RSGRIDLANKIFDCLP-VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258 (423)
Q Consensus 182 ~~~~~~~-~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 258 (423)
..+-... ..|... .++-.. ....+++-..+..... .+++.+|...+.+-...|+.+.|..++.+|++.|++.+
T Consensus 163 ~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred hhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 4332211 111111 111111 1223344444444444 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (423)
..-|..++-+ .++...++.+++-|.+.|+.|+..|+...+..+...|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888765 78888999999999999999999999888777766554
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.2e-10 Score=100.18 Aligned_cols=357 Identities=11% Similarity=0.036 Sum_probs=220.7
Q ss_pred cCCcchhHHhhcccCC--cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHH
Q 038550 5 SSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82 (423)
Q Consensus 5 ~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 82 (423)
.|++..|.++|++-.+ |+..+|++.|..=.+-+.++.|..+++...- +.|+..+|-.-...=.+.|....+..+|+
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4667777777766443 7777777777777777777777777777765 34777777777777677777777777777
Q ss_pred HHHHc-CC-CCchHHHHHHHHHHHhcCChHHHHHHh----chhcCC--cchHHHHHHHHhcCCChhhHHHH--------H
Q 038550 83 RIIRK-GL-NFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRD--EVSYNILIVGYSQTSDCSESLSL--------F 146 (423)
Q Consensus 83 ~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~ 146 (423)
..++. |- ..+...+.+...--.++..++.|.-+| +..+.+ ...|..+...=-+.|+.....+. |
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 76643 10 112223344444344556666666666 333333 33444444443444554433332 2
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchH------HHHHH---HHHHHhcCCHHHHHHHhc
Q 038550 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF------VANSI---LDFYTRSGRIDLANKIFD 217 (423)
Q Consensus 147 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l---~~~~~~~~~~~~A~~~~~ 217 (423)
+.+...+ +-|-.++.-.+......|+.+...++++.++..-++.... .|--+ +-.-....+.+.+.++|+
T Consensus 312 E~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333333 4455666666666677788888888888777653332211 11111 111123566777777776
Q ss_pred cCC---CCChhh----HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 038550 218 CLP---VKDSAS----WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290 (423)
Q Consensus 218 ~~~---~~~~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 290 (423)
... +....| |-.....-.++.+...|.+++-..+ |.-|...+|...|..-.+.++++.+..++++.++.+
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~- 467 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS- 467 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 543 222233 3333344456677888888777665 446777788888888888888888888888888765
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC----CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP----DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
|-+..+|......=...|+.+.|..+|.-.-..| ....|.+.|..-...|.++.|..+|+++++..+.. ..|..+
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-kvWisF 546 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV-KVWISF 546 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc-hHHHhH
Confidence 4566777777776677888888888887663233 34567777777778888888888888888766543 255555
Q ss_pred HH
Q 038550 367 SN 368 (423)
Q Consensus 367 ~~ 368 (423)
+.
T Consensus 547 A~ 548 (677)
T KOG1915|consen 547 AK 548 (677)
T ss_pred HH
Confidence 43
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=3.2e-11 Score=101.63 Aligned_cols=284 Identities=14% Similarity=0.075 Sum_probs=221.3
Q ss_pred hcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHH
Q 038550 105 KCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180 (423)
Q Consensus 105 ~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 180 (423)
..|++.+|+++. +..+.....|..-+.+-...|+.+.+-..+.+.-+..-.++...+.+........|+.+.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 368999999999 3334455567777788888999999999999998753355556667777788899999999999
Q ss_pred HHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC-----------ChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038550 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-----------DSASWNTLILGYGMLGEVDTAINLFEA 249 (423)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~ 249 (423)
++.+...++.+ +........+|.+.|++.....++..+.+. ...+|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr~-~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPRH-PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99998887655 455678889999999999999999988753 234688888877777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCC-CCHh
Q 038550 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVE-PDAN 327 (423)
Q Consensus 250 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~ 327 (423)
...+ .+-++..-..++.-+.+.|+.++|.++..+..+.+..|+.. . .-.+.+-++.+.-++..++. ... -++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---R-LIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---H-HHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 6654 34466777788888999999999999999999987666621 1 22345666666655555544 222 2457
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCC
Q 038550 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395 (423)
Q Consensus 328 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 395 (423)
.+.+|...|.+.+.+.+|...|+.+.+..|+ ...|..++.+|.+.|+..+|.+..++....-.+|+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 8889999999999999999999999988876 678999999999999999999999988765555543
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2e-11 Score=104.55 Aligned_cols=291 Identities=15% Similarity=0.131 Sum_probs=213.4
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhH--HHHH
Q 038550 89 LNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF--MGAI 165 (423)
Q Consensus 89 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll 165 (423)
...|...+-.....+.+.|....|+..| .....-+..|.+.+....-..+.+.+..+. .|.+.|..-. ..+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHHH
Confidence 3455555555555667778888888888 444444445555444433333333322222 1223222211 2344
Q ss_pred HHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC------ChhhHHHHHHHHhccCC
Q 038550 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK------DSASWNTLILGYGMLGE 239 (423)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~ 239 (423)
.++......+++.+-.+.....|.+.....-+....+.-...+++.|+.+|+++.+. |..+|...+- .++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhh
Confidence 566677788888888899999998887777777778888899999999999999854 4556666553 33332
Q ss_pred HHHHHHHHHH-HH-HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038550 240 VDTAINLFEA-MR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317 (423)
Q Consensus 240 ~~~a~~~~~~-m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (423)
.. +..+.+ .. -... .+.|...+.+.|.-.++.++|..+|++..+.+ +-....|..+.+-|....+...|.+-+
T Consensus 313 sk--Ls~LA~~v~~idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HH--HHHHHHHHHHhccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 22 122221 11 1223 34577788888888999999999999999875 445677888889999999999999999
Q ss_pred hhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 318 KNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 318 ~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
+++ .+.| |-..|-.|.++|...+...-|+-.|+++.+..|.|+..|.+|+.+|.+.++.++|+..|++....|-
T Consensus 388 RrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 388 RRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 998 6777 8889999999999999999999999999999999999999999999999999999999999887654
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=3.3e-11 Score=98.65 Aligned_cols=218 Identities=14% Similarity=0.109 Sum_probs=141.0
Q ss_pred HhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCc---hHHHHHHHHHHHhcCChH
Q 038550 34 AQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD---LFLTNALTDMYAKCGCLN 110 (423)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~ 110 (423)
.-+.+.++|.++|-+|.+.. +-+..+-.++.+.|.+.|..+.|+++...+.++.--+. ......|..-|...|-+|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34568899999999999853 23445666788889999999999999999886532111 234556777899999999
Q ss_pred HHHHHhc-hh---cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh----hHHHHHHHHHhHhhHHhhhHHHH
Q 038550 111 LAQNVFN-IS---FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV----SFMGAISACANLAAIKQGKEIHG 182 (423)
Q Consensus 111 ~a~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~ 182 (423)
.|+.+|. .. +--..+.-.|+..|....+|++|+++-+++.+.+-.+... .|.-+...+....+.+.|...+.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999993 22 2244567789999999999999999999998876544322 33444444445566777777777
Q ss_pred HHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 038550 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS----ASWNTLILGYGMLGEVDTAINLFEAMRED 253 (423)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 253 (423)
+..+.+......+ -.+.+.+...|+++.|.+.++.+.+.|+ .+...|..+|...|+.++....+..+.+.
T Consensus 205 kAlqa~~~cvRAs-i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 205 KALQADKKCVRAS-IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHhhCccceehh-hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6666543322211 1234445555555555555555544332 23334444555555555555555554443
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=2.1e-11 Score=102.39 Aligned_cols=194 Identities=15% Similarity=0.090 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038550 194 FVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270 (423)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 270 (423)
..+..+...+...|++++|...+++.. +.+...+..+...+...|++++|...+++..+... .+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHH
Confidence 344455566666666666666666543 22455667777788888888888888888877642 35567777788888
Q ss_pred ccCcHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHH
Q 038550 271 HGGLVEKGKKYFDEMQADS-VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAW 347 (423)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 347 (423)
..|++++|...+++..... .+.....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 8899999999998888752 2223456667778888999999999998877 3344 45678888888999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 348 AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 348 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999888888888888888899999999999998887754
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.9e-10 Score=99.39 Aligned_cols=337 Identities=12% Similarity=-0.001 Sum_probs=221.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhchhCCCCCC-chhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCc-hHHHHHHHHH
Q 038550 25 SWNAMVANFAQNRLELKALQLVREMPIHNEFPN-SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD-LFLTNALTDM 102 (423)
Q Consensus 25 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 102 (423)
.+.....-|.++|++++|++.+.+.+.. .|| +..|.....+|...|+|+++.+.-...++. .|+ ...+..-.++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 3445556788999999999999999885 577 788889999999999999999988888766 343 4466666778
Q ss_pred HHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHH---------HHhcC--CCCchhhHHHHHHHHHhH
Q 038550 103 YAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSE---------MRLLG--MKHDVVSFMGAISACANL 171 (423)
Q Consensus 103 ~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------m~~~~--~~~~~~~~~~ll~~~~~~ 171 (423)
+-..|++++|+.=. |-..+...+....-.--+.+++++ |.+.+ +-|+.....+....+...
T Consensus 193 ~E~lg~~~eal~D~--------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 193 HEQLGKFDEALFDV--------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HHhhccHHHHHHhh--------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 88889888886432 222222222222222222222221 22122 234433333333322110
Q ss_pred ------hhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHh-cCCHHHHHHHhccC-------CCC---C------hhhHH
Q 038550 172 ------AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR-SGRIDLANKIFDCL-------PVK---D------SASWN 228 (423)
Q Consensus 172 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~-------~~~---~------~~~~~ 228 (423)
...+++-..+....+ ..+.. ...+.+|...+.+- ... | ..+..
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~--------------~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALE--------------ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred ccccccCCCccchhhHHHHHH--------------HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 000011111110000 00000 00122222222110 111 1 11222
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038550 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308 (423)
Q Consensus 229 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (423)
....-+.-.|+.-.|.+-|+..+.....++. .|..+...|....+.++.+..|++..+.+ +-++.+|..-.+.+.-.+
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence 2222344568899999999999987544332 37778888999999999999999999875 456778887888888889
Q ss_pred ChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 309 LMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 309 ~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
++++|..-|++. .+.| +...|-.+.-+..+.+++++++..|++..+..|.-+..|+..+.++..+++++.|.+.|+..
T Consensus 409 q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 999999999988 6777 56678888888889999999999999999999999999999999999999999999999998
Q ss_pred Hhc
Q 038550 387 KSR 389 (423)
Q Consensus 387 ~~~ 389 (423)
.+.
T Consensus 489 i~L 491 (606)
T KOG0547|consen 489 IEL 491 (606)
T ss_pred Hhh
Confidence 764
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.8e-10 Score=101.31 Aligned_cols=270 Identities=11% Similarity=0.014 Sum_probs=208.5
Q ss_pred cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHH
Q 038550 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199 (423)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 199 (423)
..++........-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+-..+++.-+ ....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhH
Confidence 3455556666677778889999999999988764 66666777777788888888777777777777644 445666778
Q ss_pred HHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 038550 200 LDFYTRSGRIDLANKIFDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 276 (423)
...|.-.|+.++|++.|.+... .-...|-.+..+|+-.|..++|+..+...-+.- +-...-+--+.--|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 8888888999999999987653 345789999999999999999999888876641 111112222334477889999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-----C---CC-CHhHHHHHHHHHHhcCChhHHHH
Q 038550 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP-----V---EP-DANIWGALLGACRIYGNVELGAW 347 (423)
Q Consensus 277 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~---~~-~~~~~~~l~~~~~~~~~~~~a~~ 347 (423)
.|.++|.+.... .|-|+...+-+.-.....+.+.+|..+|+..- + .+ -..+++.|..+|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 999999998875 35577778888777778889999999887651 1 11 34568888899999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCC
Q 038550 348 AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395 (423)
Q Consensus 348 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 395 (423)
.+++++.+.|.++.++..++-.|...|+++.|++.|.+... +.|+.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n 522 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDN 522 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCcc
Confidence 99999999999999999999999999999999999988654 45555
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.44 E-value=8.8e-11 Score=105.86 Aligned_cols=232 Identities=17% Similarity=0.154 Sum_probs=176.9
Q ss_pred chhhHHHHHHHHHhHhhHHhhhHHHHHHHHh-----c-cCcc-hHHHHHHHHHHHhcCCHHHHHHHhccCC--------C
Q 038550 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRK-----H-LHTH-LFVANSILDFYTRSGRIDLANKIFDCLP--------V 221 (423)
Q Consensus 157 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~ 221 (423)
-..+...+...|...|+++.|+.+++..++. | ..|. ....+.+...|...+++++|..+|+++. +
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3457777899999999999999999988775 1 1222 2333457788999999999999998765 1
Q ss_pred C---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHc---
Q 038550 222 K---DSASWNTLILGYGMLGEVDTAINLFEAMRED-----GV-GYDP-VSYIAILTACSHGGLVEKGKKYFDEMQAD--- 288 (423)
Q Consensus 222 ~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 288 (423)
. -..+++.|...|.+.|++++|...++...+- |. .|.. ..++.+...|+..+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1 2356788888999999999998888876431 21 2222 24667777799999999999999887664
Q ss_pred CCCCC----hhhHHHHHHHHHhcCChHHHHHHHhhC---------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 289 SVKPT----EMHYACMVDLLGRAGLMEDAVKLIKNL---------PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 289 ~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~---------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
-+.++ ..+++.|...|...|++++|.++++++ +..+ ....++.|...|.+.+++++|.++|++...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 467899999999999999999999876 1223 245678888999999999999999988765
Q ss_pred c----CCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 355 L----KPQH---CGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 355 ~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
. +|++ ..+|..|+..|.+.|++++|+++.+....
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3 3444 45688999999999999999999888763
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=2e-10 Score=108.26 Aligned_cols=260 Identities=12% Similarity=0.042 Sum_probs=169.2
Q ss_pred CcchHHHHHHHHhc-----CCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh---------HhhHHhhhHHHHHHHHh
Q 038550 122 DEVSYNILIVGYSQ-----TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN---------LAAIKQGKEIHGVTIRK 187 (423)
Q Consensus 122 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~ 187 (423)
+...|...+.+... .+++++|.+.|++..+.. +-+...|..+..++.. .+++++|...++++.+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44445555554321 234678888888888743 2234455555554432 24478888888888876
Q ss_pred ccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038550 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264 (423)
Q Consensus 188 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 264 (423)
++. +...+..+..++...|++++|...|++.. +.+...+..+...+...|++++|...+++..+.... +...+..
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~ 411 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGIT 411 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHH
Confidence 543 45566677778888899999999988765 335567788888888899999999999998876432 2223334
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHh-HHHHHHHHHHhcCCh
Q 038550 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDAN-IWGALLGACRIYGNV 342 (423)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~ 342 (423)
++..+...|++++|...++++.....+-+...+..+..++...|+.++|...++++ ...|+.. ..+.+...|...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--
Confidence 44456667888999998888876532223445666777888889999999988887 3445433 3444555566666
Q ss_pred hHHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 343 ELGAWAAEHLFMLK---PQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 343 ~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+.|...++.+.+.. +.++.. +...|.-.|+-+.+..+ +++.+.+
T Consensus 490 ~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 47777677765533 443333 33445556666666655 7776654
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=2.7e-10 Score=107.49 Aligned_cols=255 Identities=10% Similarity=0.006 Sum_probs=162.2
Q ss_pred CCchhHHHHHHHhhc-----CCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHH---------hcCChHHHHHHh----c
Q 038550 56 PNSVTLTNVLPACAR-----GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA---------KCGCLNLAQNVF----N 117 (423)
Q Consensus 56 p~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~----~ 117 (423)
.+...|...+.+... .+++++|...|++.++.. +.+...|..+..++. ..+++++|...+ +
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 355555555544211 234567888888887664 233455555554443 223467777777 4
Q ss_pred hhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHH
Q 038550 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197 (423)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 197 (423)
..+.+..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...++.+.+..+.+... +.
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~-~~ 410 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA-GI 410 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh-HH
Confidence 455677778888888888888888888888888764 4445667777788888888888888888888876543222 22
Q ss_pred HHHHHHHhcCCHHHHHHHhccCC---CC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc
Q 038550 198 SILDFYTRSGRIDLANKIFDCLP---VK-DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP-VSYIAILTACSHG 272 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~ 272 (423)
.++..+...|++++|...+++.. .| ++..+..+..++...|+.++|...+.++... .|+. ...+.+...|+..
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhcc
Confidence 34445666788888888887653 23 4455677777888889999998888887654 3333 3444555556666
Q ss_pred CcHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 273 GLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 273 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
| +.|...++.+.+. .-.+....+ +-..|.-.|+.+.+..+ +++
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHh
Confidence 6 4777777776654 222322223 33344556666666655 666
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=1e-12 Score=79.91 Aligned_cols=50 Identities=20% Similarity=0.372 Sum_probs=40.5
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhc
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 70 (423)
||+.+||.+|++|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888887764
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=6.5e-09 Score=94.98 Aligned_cols=377 Identities=12% Similarity=0.064 Sum_probs=221.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCC-chHHHHHHH
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALT 100 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 100 (423)
|...|..|.-+....|+++.+.+.|++....- .-....|+.+...+...|.-..|..+++.-......| ++..+-..-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 55566666666667777777777777665432 2244566666666666666666666666554332122 222222222
Q ss_pred HHHH-hcCChHHHHHHh----c-----hhcCCcchHHHHHHHHhcC-----------CChhhHHHHHHHHHhcCCCCchh
Q 038550 101 DMYA-KCGCLNLAQNVF----N-----ISFRDEVSYNILIVGYSQT-----------SDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 101 ~~~~-~~g~~~~a~~~~----~-----~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
..|. +.+.+++++..- + ...-....|..+.-+|... ....++++.+++..+.+ +.|..
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~ 479 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPL 479 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCch
Confidence 2222 224444444333 1 0011223344443333221 11345566666666544 33333
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC-----------------
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK----------------- 222 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------- 222 (423)
....+.--|+..++++.|.....+..+.+...+...|..+.-.+...+++.+|+.+.+.....
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 444444455666677777777777777666666666666666666677777776666533210
Q ss_pred --C----hhhHHHHHHHHh-----------------------ccCCHHHHHHHHHHH--------HHcC---------CC
Q 038550 223 --D----SASWNTLILGYG-----------------------MLGEVDTAINLFEAM--------REDG---------VG 256 (423)
Q Consensus 223 --~----~~~~~~li~~~~-----------------------~~g~~~~a~~~~~~m--------~~~~---------~~ 256 (423)
| ..|...++...- ..++..++......+ ...| +.
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 0 011111111110 001111111111111 0011 11
Q ss_pred CCH--------HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-H
Q 038550 257 YDP--------VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-A 326 (423)
Q Consensus 257 p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~ 326 (423)
|.. ..|......+.+.+..++|...+.+.... .+.....|......+...|..++|.+.|... .+.|+ +
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 111 12334455567778888888888887765 3456667777778888899999999988876 67784 5
Q ss_pred hHHHHHHHHHHhcCChhHHHH--HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCccccc
Q 038550 327 NIWGALLGACRIYGNVELGAW--AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQT 402 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 402 (423)
.+..++...+.+.|+...|.. ++..+.+.+|.++.+|..++..+.+.|+.++|.+.|....+... .+|..+|..+
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV~pFs~i 795 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPVLPFSNI 795 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCccccccc
Confidence 688889999999999888888 99999999999999999999999999999999999999877653 3444455443
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=2.3e-12 Score=78.35 Aligned_cols=50 Identities=30% Similarity=0.590 Sum_probs=34.4
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038550 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271 (423)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 271 (423)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 46666777777777777777777777777777777777777777766653
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=3.4e-10 Score=95.01 Aligned_cols=192 Identities=15% Similarity=0.098 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 038550 95 LTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170 (423)
Q Consensus 95 ~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 170 (423)
.+..+...+...|++++|.+.+ +..+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 3444444444444444444444 1112233344444445555555555555555554432 2233334444444444
Q ss_pred HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038550 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250 (423)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 250 (423)
.|++++|...++...+....+ .....+..+...+...|++++|...+++.
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYP------------------------------QPARSLENAGLCALKAGDFDKAEKYLTRA 161 (234)
T ss_pred cccHHHHHHHHHHHHhccccc------------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555444444321111 11223344444555555566666555555
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhh
Q 038550 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319 (423)
Q Consensus 251 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (423)
.+... .+...+..+...+...|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.
T Consensus 162 ~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 162 LQIDP-QRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHhCc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 54321 13344555555555666666666666655554 233344444555555555666666555444
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=5.1e-11 Score=97.68 Aligned_cols=226 Identities=12% Similarity=0.022 Sum_probs=190.7
Q ss_pred HHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHhcc
Q 038550 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--K-DSASWNTLILGYGML 237 (423)
Q Consensus 161 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 237 (423)
-+-+..+|.+.|.+.+|++.++..++.... +.||..|..+|.+..++..|+.+|.+-.. | ++.....+.+.+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~--~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPH--PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCc--hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 356788999999999999999988876544 45667788999999999999999987763 3 444445567778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038550 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317 (423)
Q Consensus 238 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (423)
++.++|.++++...+.. +.+......+...|.-.++++-|..+|+++...|+ -+...|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988864 23666777777888999999999999999999985 57788999999999999999999888
Q ss_pred hhC---CCCC--CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 318 KNL---PVEP--DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 318 ~~~---~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
++. ...| -..+|-.|.......||+..|.+.|+-+...+|++...++.|+-.-.+.|++++|..+++...+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 876 1223 356788888888999999999999999999999999999999999999999999999999887643
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=8.9e-11 Score=96.29 Aligned_cols=230 Identities=8% Similarity=0.014 Sum_probs=192.8
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc
Q 038550 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206 (423)
Q Consensus 127 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (423)
+.+.++|.+.|.+.+|.+.++.-++. .|-+.||..+-.+|.+..+++.|..++.+-++.- +.++....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56889999999999999999998875 5667799999999999999999999998877652 23344444566788889
Q ss_pred CCHHHHHHHhccCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 038550 207 GRIDLANKIFDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283 (423)
Q Consensus 207 ~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 283 (423)
++.++|.++|+...+ .++....++...|.-.++++-|+..++++.+.|+. ++..|..+.-+|.-.++++-+..-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998764 36667777778888899999999999999999987 88899999999999999999999999
Q ss_pred HHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 284 EMQADSVKPT--EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 284 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
+....--.|+ ..+|-.+.......||+..|.+.|+-. ...| +...++.|.-.-.+.|++++|..++..+....|.-
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 9887633343 456777777778899999999999977 3234 56789999888899999999999999999998874
Q ss_pred c
Q 038550 360 C 360 (423)
Q Consensus 360 ~ 360 (423)
.
T Consensus 463 ~ 463 (478)
T KOG1129|consen 463 A 463 (478)
T ss_pred c
Confidence 3
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.1e-08 Score=87.03 Aligned_cols=266 Identities=14% Similarity=0.039 Sum_probs=117.8
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHh---chhcC-CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHH
Q 038550 91 FDLFLTNALTDMYAKCGCLNLAQNVF---NISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS 166 (423)
Q Consensus 91 ~~~~~~~~l~~~~~~~g~~~~a~~~~---~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 166 (423)
.|......+.+++...|+.++|+..| .+..| ++.........+.+.|+++....+...+.... .-....|..-+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 34444455555555555555555555 11122 22222223333344444444444444443321 111122222222
Q ss_pred HHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHH
Q 038550 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTA 243 (423)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a 243 (423)
.+...++++.|..+-++.++.+.. +...+-.-..++...++.+.|.--|+... +-+...|..|+.+|...|++.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 333344455555544444443221 11222222234445555555555554332 22445555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH-HHH-hccCcHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 244 INLFEAMREDGVGYDPVSYIAIL-TAC-SHGGLVEKGKKYFDEMQADSVKPT-EMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 244 ~~~~~~m~~~~~~p~~~~~~~ll-~~~-~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
...-+...+. ++-+..+.+.+. ..| .....-++|.++++..... .|+ ....+.+...+...|..++++.++++.
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 5544443332 122333433331 111 1222234555555554443 222 233344445555555555565555554
Q ss_pred -CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 038550 321 -PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361 (423)
Q Consensus 321 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 361 (423)
.+.||....+.|...+...+.+++|++.|..+.+.+|.+..
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 44555555555555555555566666666666665555533
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=3.1e-08 Score=88.94 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=80.8
Q ss_pred CCChhhH--HHHHHHHHhcCChHHHHHHHhhC-CCCCCHh-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 291 KPTEMHY--ACMVDLLGRAGLMEDAVKLIKNL-PVEPDAN-IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 291 ~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
+|+...| -.+++.|-+.|+++.|+..++.. +..|+.. .|..=.+.+...|++++|...++++.+++-.|...-.--
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 4554444 45678888999999999999987 6677644 555556888999999999999999999997776555567
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccc
Q 038550 367 SNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 367 ~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
+....++++.++|.++.......|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 7778899999999999998887764
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.32 E-value=1e-08 Score=93.84 Aligned_cols=279 Identities=11% Similarity=-0.019 Sum_probs=158.6
Q ss_pred cccCCcchhHHhhcccCC--cC-hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhh------cCCC
Q 038550 3 AKSSRPAEASYLFHNIAE--KN-IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA------RGHF 73 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~------~~~~ 73 (423)
...|++++|+..++...+ .| ..........+.+.|+.++|..++..+++.+ |+...|...+..+. ...+
T Consensus 15 ~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccccc
Confidence 467899999999977655 44 4455666788889999999999999998876 66666655555443 1224
Q ss_pred CccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh--chhcCCc-chHHHHHHHHhcCCChhhHHHHHHHHH
Q 038550 74 LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF--NISFRDE-VSYNILIVGYSQTSDCSESLSLFSEMR 150 (423)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~--~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~ 150 (423)
.+...++++++...- |.......+.-.+.....+......| ....+.+ .+|+.+-..|......+-..+++....
T Consensus 93 ~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~ 170 (517)
T PF12569_consen 93 VEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYV 170 (517)
T ss_pred HHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 566677777775442 22222221211122222333333333 2222232 344555455554444444444444443
Q ss_pred hc----C----------CCCch--hhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHH
Q 038550 151 LL----G----------MKHDV--VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANK 214 (423)
Q Consensus 151 ~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (423)
.. + -+|+. .++..+...|...|++++|..+++..++..+. .+..|..-...+-..|++++|.+
T Consensus 171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 22 1 12222 24445556666777777777777777665422 25566666677777777777777
Q ss_pred HhccCCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHhccCcHHHHHHHHH
Q 038550 215 IFDCLPVK---DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS--------YIAILTACSHGGLVEKGKKYFD 283 (423)
Q Consensus 215 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--------~~~ll~~~~~~~~~~~a~~~~~ 283 (423)
.++....- |-..-+-.+..+.+.|++++|.+++....+.+..|-... ......+|.+.|++..|++.|.
T Consensus 250 ~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 250 AMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77655533 334445556666777777777777777766554332211 1334455667777776666555
Q ss_pred HHH
Q 038550 284 EMQ 286 (423)
Q Consensus 284 ~~~ 286 (423)
.+.
T Consensus 330 ~v~ 332 (517)
T PF12569_consen 330 AVL 332 (517)
T ss_pred HHH
Confidence 444
No 68
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.32 E-value=4.8e-10 Score=103.58 Aligned_cols=363 Identities=12% Similarity=0.010 Sum_probs=216.5
Q ss_pred CcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCC------------------------CCCchhHHHHHHHhhcCCCCc
Q 038550 20 EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE------------------------FPNSVTLTNVLPACARGHFLR 75 (423)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~------------------------~p~~~~~~~l~~~~~~~~~~~ 75 (423)
.||..+|..+|.-|+..|+.+.|- +|..|.-... .|...||+.+..+|+..||+.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDli 100 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDLI 100 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccchH
Confidence 489999999999999999999888 7777653322 366789999999999999876
Q ss_pred cHHHHHHHHH-------HcCC-----------------CCchHHHHHHHHHHHhcCChHHHHHHhc--------------
Q 038550 76 PGKEIHARII-------RKGL-----------------NFDLFLTNALTDMYAKCGCLNLAQNVFN-------------- 117 (423)
Q Consensus 76 ~a~~~~~~~~-------~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~-------------- 117 (423)
.-..+-+.|. ..|+ -||..+ .+......|-++.+.+++.
T Consensus 101 ~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~vf 177 (1088)
T KOG4318|consen 101 LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVF 177 (1088)
T ss_pred HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHHH
Confidence 5332222222 1121 122221 1111222233333332220
Q ss_pred ----------------h-----hcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHh
Q 038550 118 ----------------I-----SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176 (423)
Q Consensus 118 ----------------~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 176 (423)
+ ..+++.+|..++.+-...|+.+.|..++.+|++.|++.+.+-|..++-+ .++...
T Consensus 178 Lrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~ 254 (1088)
T KOG4318|consen 178 LRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQV 254 (1088)
T ss_pred HHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchH
Confidence 0 0247778889999999999999999999999999999888888777766 778888
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHH------------------------Hhc---------cCCC--
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANK------------------------IFD---------CLPV-- 221 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~------------------------~~~---------~~~~-- 221 (423)
++.++.-|...|+.|+..|+.-.+..+.++|....+.. .++ ..++
T Consensus 255 ~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~f 334 (1088)
T KOG4318|consen 255 FEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLF 334 (1088)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHH
Confidence 88889999999999999888766665555433211111 000 0000
Q ss_pred -----CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC------------------------------------------
Q 038550 222 -----KDSASWNTLILGYGMLGEVDTAINLFEAMREDG------------------------------------------ 254 (423)
Q Consensus 222 -----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------------------------------------------ 254 (423)
.....|...++.. ..|.-+...++...|..--
T Consensus 335 Llg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~ 413 (1088)
T KOG4318|consen 335 LLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLN 413 (1088)
T ss_pred HhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhc
Confidence 0111121111111 1222222222222111000
Q ss_pred -------------CCCCH----------------------------HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 038550 255 -------------VGYDP----------------------------VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293 (423)
Q Consensus 255 -------------~~p~~----------------------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 293 (423)
..||. ..-+.++..|++.-+..+++..-+.....-++
T Consensus 414 se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~-- 491 (1088)
T KOG4318|consen 414 SEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA-- 491 (1088)
T ss_pred hhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 01111 01122222333333333333222222222111
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCC-----CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCcchHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNLP-----VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQHCGYYIL 365 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~ 365 (423)
..|..||+-++.....+.|..+.++.. +..|...+..+.+.+.+.+....+..+++++.+.- |.....+..
T Consensus 492 -g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~ 570 (1088)
T KOG4318|consen 492 -GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFP 570 (1088)
T ss_pred -hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHH
Confidence 457778888888888888888888873 23355567778888888899999999999887743 222334555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccccC
Q 038550 366 LSNMYAEAGKWDEASKVRELMKSREAKK 393 (423)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 393 (423)
+.......|+.+...++.+-+...|+..
T Consensus 571 ~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 571 LLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 6667778899888888888888888755
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=5.4e-08 Score=82.82 Aligned_cols=280 Identities=10% Similarity=-0.042 Sum_probs=203.2
Q ss_pred hcCChHHHHHHh------chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh-hHHHHHHHHHhHhhHHhh
Q 038550 105 KCGCLNLAQNVF------NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV-SFMGAISACANLAAIKQG 177 (423)
Q Consensus 105 ~~g~~~~a~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a 177 (423)
..++...|...+ ...+.|+.....+..++...|+.++|+..|++.+.. .|+.. ........+.+.|+.+..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 345555555554 334557888899999999999999999999998763 34332 222233345677888888
Q ss_pred hHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 038550 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK---DSASWNTLILGYGMLGEVDTAINLFEAMREDG 254 (423)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 254 (423)
..+...+....- .+...|-.-........+++.|+.+-++..+. ++..|-.-...+...|++++|.-.|+......
T Consensus 286 ~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 286 SALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 888777766432 22222333344556678888998888876643 44455544567888999999999999988752
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHH-hcCChHHHHHHHhhC-CCCCC-HhHHH
Q 038550 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV-DLLG-RAGLMEDAVKLIKNL-PVEPD-ANIWG 330 (423)
Q Consensus 255 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~-~~~~~-~~~~~ 330 (423)
+-+...|.-|+.+|...|++.+|...-+...+. ++.+..+...+. ..+. ...--++|..++++. .+.|+ ....+
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN 442 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH
Confidence 236789999999999999999999888777665 345555554442 2222 233457899998876 77886 44677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 331 ALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 331 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.+...+...|..+.++.++++.....|+ ......|+..+...+.+.+|.+.|......+
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 7788899999999999999999998886 5788899999999999999999998876643
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.28 E-value=1.4e-08 Score=92.92 Aligned_cols=285 Identities=10% Similarity=0.005 Sum_probs=183.3
Q ss_pred HHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC--
Q 038550 30 VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG-- 107 (423)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 107 (423)
...+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ +.+..-|..+..+..-..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 45678899999999999875543 44344566777888999999999999999999986 445555666666653222
Q ss_pred ---ChHHHHHHhc---hhcCCcchHHHHHHHHhcCCChh-hHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHH
Q 038550 108 ---CLNLAQNVFN---ISFRDEVSYNILIVGYSQTSDCS-ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180 (423)
Q Consensus 108 ---~~~~a~~~~~---~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 180 (423)
+.+...++++ ..-|...+...+.-.+.....+. .+...+..+...|+|+ +|..+-..|......+-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 3455556662 12222222222222222222333 3455667777888653 555555556555555555555
Q ss_pred HHHHHHh----c----------cCcch--HHHHHHHHHHHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHhccCCHH
Q 038550 181 HGVTIRK----H----------LHTHL--FVANSILDFYTRSGRIDLANKIFDCLPV--K-DSASWNTLILGYGMLGEVD 241 (423)
Q Consensus 181 ~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 241 (423)
+...... + -+|+. .++..+...|...|++++|+.++++... | .+..|..-...+-..|++.
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 5554432 1 12332 3445567778888888888888887653 2 3566777778888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhh--------HHHHHHHHHhcCChHHH
Q 038550 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH--------YACMVDLLGRAGLMEDA 313 (423)
Q Consensus 242 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a 313 (423)
+|.+.++........ |...-+.....+.+.|+.++|.+++....+.+..|.... ......+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 888888888876543 556666667778888888888888888877654333221 12345677788888887
Q ss_pred HHHHhhC
Q 038550 314 VKLIKNL 320 (423)
Q Consensus 314 ~~~~~~~ 320 (423)
+..|..+
T Consensus 325 Lk~~~~v 331 (517)
T PF12569_consen 325 LKRFHAV 331 (517)
T ss_pred HHHHHHH
Confidence 7665443
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=1.2e-09 Score=94.37 Aligned_cols=228 Identities=10% Similarity=-0.013 Sum_probs=138.9
Q ss_pred hcCCChhhHHHHHHHHHhcC-CCCc--hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHH
Q 038550 134 SQTSDCSESLSLFSEMRLLG-MKHD--VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 210 (423)
...+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|+...+..+ .+...|+.+...+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHH
Confidence 34466777888888877542 1222 34566677777788888888888888877654 34667777888888888888
Q ss_pred HHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 211 LANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 211 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
+|...|++.. +.+..+|..+..++...|++++|.+.++...+. .|+..........+...++.++|...+.+...
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 8888887664 234567777777777888888888888887765 33322222222223455678888888866553
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHH--HHHHhhC-C----CCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-
Q 038550 288 DSVKPTEMHYACMVDLLGRAGLMEDA--VKLIKNL-P----VEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ- 358 (423)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~-~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~- 358 (423)
.. .|+...+ .+. ....|+...+ ++.+.+. . +.| ....|..+...+...|++++|+..|+++.+.+|.
T Consensus 194 ~~-~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 KL-DKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred hC-CccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 32 3332222 222 2234444332 2222211 1 111 2346777777788888888888888888887753
Q ss_pred CcchHHHHHH
Q 038550 359 HCGYYILLSN 368 (423)
Q Consensus 359 ~~~~~~~l~~ 368 (423)
.+.....+++
T Consensus 270 ~~e~~~~~~e 279 (296)
T PRK11189 270 FVEHRYALLE 279 (296)
T ss_pred HHHHHHHHHH
Confidence 3333333443
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=4.8e-10 Score=87.73 Aligned_cols=173 Identities=14% Similarity=0.090 Sum_probs=124.9
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (423)
+...|.-+|...|+...|..-+++.++.... +..++..+...|.+.|..+.|.+.|++..+.. +-+..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 3455666777888888888888887776322 45677777777888888888888888877753 445667777777778
Q ss_pred hcCChHHHHHHHhhCCCCC----CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 038550 306 RAGLMEDAVKLIKNLPVEP----DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 381 (423)
..|++++|...|++.-..| -..+|..+.-+..+.|+.+.|...|++.++.+|..+.....++....+.|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 8888888888887772233 345677777777778888888888888888888888888888888888888888888
Q ss_pred HHHHHHhccccCCCCCcccc
Q 038550 382 VRELMKSREAKKNPGCSWVQ 401 (423)
Q Consensus 382 ~~~~m~~~~~~~~~~~~~~~ 401 (423)
.+++....+. ++...-|..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~ 213 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLG 213 (250)
T ss_pred HHHHHHhccc-ccHHHHHHH
Confidence 8877776665 444444443
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.9e-09 Score=92.01 Aligned_cols=278 Identities=16% Similarity=0.068 Sum_probs=182.5
Q ss_pred CCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHH----HHhchhcCCcchHHHH
Q 038550 54 EFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ----NVFNISFRDEVSYNIL 129 (423)
Q Consensus 54 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~----~~~~~~~~~~~~~~~l 129 (423)
..-+.........-|...+++.+..++.+...+.. ++....+..-|.++...|+..+-. ++.+..|....+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 33455555555666666777777777777777665 555555555566666666644332 2224455666777777
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHh--ccCcchHHHHHHHHHHHhcC
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK--HLHTHLFVANSILDFYTRSG 207 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 207 (423)
.--|...|..++|.+.|.+..... +.=...|.....++.-.|.-++|...+..+.+. |.. -+..| +.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhc
Confidence 777777777777777777665432 112345666677777777777777776665552 211 11222 344467777
Q ss_pred CHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHc--CCC----CCHHHHHHHHHHHhccCcHHHH
Q 038550 208 RIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMRED--GVG----YDPVSYIAILTACSHGGLVEKG 278 (423)
Q Consensus 208 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~----p~~~~~~~ll~~~~~~~~~~~a 278 (423)
+++.|.++|.... +.|+...+-+.-.....+.+.+|..+|+..+.. .+. --..+++.|..+|.+.+.+++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 7777777776554 446667777766666677788888888776521 011 1334678888888888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHH
Q 038550 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACR 337 (423)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~ 337 (423)
+..++..+... +.+..++.++.-.|...|+++.|.+.|.+. .++|+..+...++..+.
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 88888888763 567888888888888888888888888776 77887766666665443
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=4.7e-09 Score=94.93 Aligned_cols=237 Identities=17% Similarity=0.150 Sum_probs=155.0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhc----hh-------cCCcc-hHHHHHHHHhcCCChhhHHHHHHHHHhc-----C-C
Q 038550 93 LFLTNALTDMYAKCGCLNLAQNVFN----IS-------FRDEV-SYNILIVGYSQTSDCSESLSLFSEMRLL-----G-M 154 (423)
Q Consensus 93 ~~~~~~l~~~~~~~g~~~~a~~~~~----~~-------~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~ 154 (423)
..+...|...|...|+++.|+.++. .. .+.+. ..+.+...|...+++++|..+|+++... | -
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566668888888888888888882 21 11222 2345777888999999999999988753 2 1
Q ss_pred CC-chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCCh-hhHHHHHH
Q 038550 155 KH-DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS-ASWNTLIL 232 (423)
Q Consensus 155 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~li~ 232 (423)
.| -..+++.|..+|.+.|++++|...++.+.+.--.. +. ...+.+ ..++.++.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~-----------~~--------------~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL-----------LG--------------ASHPEVAAQLSELAA 333 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-----------hc--------------cChHHHHHHHHHHHH
Confidence 12 23366667777788888888877776654421000 00 001111 22444555
Q ss_pred HHhccCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCC--C-ChhhHH
Q 038550 233 GYGMLGEVDTAINLFEAMRED---GVGYD----PVSYIAILTACSHGGLVEKGKKYFDEMQAD----SVK--P-TEMHYA 298 (423)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~ 298 (423)
.++..+++++|..+++...+. -+.++ ..+++.+...|...|++++|++++++++.. +.. + ....++
T Consensus 334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 666677777777777654331 11222 357888888888889999888888887654 111 1 244567
Q ss_pred HHHHHHHhcCChHHHHHHHhhC--------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 299 CMVDLLGRAGLMEDAVKLIKNL--------PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~--------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
.|...|.+.+++.+|.++|.+. ...|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 7778888888888888887765 23344 35788899999999999999999888864
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.19 E-value=1.2e-07 Score=86.90 Aligned_cols=358 Identities=14% Similarity=0.111 Sum_probs=245.1
Q ss_pred ccccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCC-chhHHHHHHHhh-cCCCCcc
Q 038550 2 YAKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN-SVTLTNVLPACA-RGHFLRP 76 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~-~~~~~~~ 76 (423)
+.+.|+++.+.+.|++... .....|+.+...+...|.-..|+.+++......-.|+ ...+-..-..|. +.+..++
T Consensus 333 l~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ee 412 (799)
T KOG4162|consen 333 LSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEE 412 (799)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhh
Confidence 4578999999999999665 5677899999999999999999999988766543343 334433334444 4677888
Q ss_pred HHHHHHHHHHc--CC--CCchHHHHHHHHHHHhcC-----------ChHHHHHHh----chhcCCcchHHHHHHHHhcCC
Q 038550 77 GKEIHARIIRK--GL--NFDLFLTNALTDMYAKCG-----------CLNLAQNVF----NISFRDEVSYNILIVGYSQTS 137 (423)
Q Consensus 77 a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~ 137 (423)
+..+..+++.. +. ...+..|..+.-+|...- ...++.+.+ +..+.|..+...+.--|+..+
T Consensus 413 gldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R 492 (799)
T KOG4162|consen 413 GLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQR 492 (799)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 88877777762 11 123444555554544321 123344444 223445555555666677889
Q ss_pred ChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccC-------------------cchHHHHH
Q 038550 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH-------------------THLFVANS 198 (423)
Q Consensus 138 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------------~~~~~~~~ 198 (423)
+.+.|.+..++..+.+-.-+...|..+.-.+...+++..|+.+.+.....-.. ....|...
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 99999999999999865678888988888889999999999988776553211 01112222
Q ss_pred HHHHHHh------cCCHHHHHHHhccC----------------------------------C------CCC------hhh
Q 038550 199 ILDFYTR------SGRIDLANKIFDCL----------------------------------P------VKD------SAS 226 (423)
Q Consensus 199 l~~~~~~------~~~~~~A~~~~~~~----------------------------------~------~~~------~~~ 226 (423)
++..+-. .++-....+....+ + .|+ ...
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 2222210 01100111111110 0 011 123
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (423)
|......+.+.+..++|...+.+..... +.....|......+...|...+|.+.|....... |-+.....++..++.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 5556667788889999988888887652 3466677777778888999999999999988753 3356778899999999
Q ss_pred cCChHHHHH--HHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 038550 307 AGLMEDAVK--LIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361 (423)
Q Consensus 307 ~~~~~~a~~--~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 361 (423)
.|+..-|.. ++..+ .+.| +...|-.+...+.+.|+.+.|.+.|..+.++.+.+|.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999888877 77777 6666 7889999999999999999999999999998876653
No 76
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.5e-07 Score=78.73 Aligned_cols=380 Identities=10% Similarity=0.030 Sum_probs=208.2
Q ss_pred ccCCcchhHHhhcccCC---cChhhHH-HHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHH
Q 038550 4 KSSRPAEASYLFHNIAE---KNIVSWN-AMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 79 (423)
-..++..|+.+++.-.. ......+ -+..++.+.|++++|+..+..+.... .|+...+..+..+..-.|.+.+|..
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 34567777777765443 1111222 24566788899999999998887653 4666677777666666677777776
Q ss_pred HHHHHHHcCCCCchHHHHHH------------------------------HHHHHhcCChHHHHHHh-chh--cCCcchH
Q 038550 80 IHARIIRKGLNFDLFLTNAL------------------------------TDMYAKCGCLNLAQNVF-NIS--FRDEVSY 126 (423)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l------------------------------~~~~~~~g~~~~a~~~~-~~~--~~~~~~~ 126 (423)
+-.... .++-.-..| .+...-.-.+.+|++++ +.. .|+-...
T Consensus 113 ~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al 187 (557)
T KOG3785|consen 113 IAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL 187 (557)
T ss_pred HHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh
Confidence 654331 111111222 22222223455666666 222 1222223
Q ss_pred HH-HHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH--hhHHhhh------------HHHHHHHHhcc--
Q 038550 127 NI-LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL--AAIKQGK------------EIHGVTIRKHL-- 189 (423)
Q Consensus 127 ~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~------------~~~~~~~~~~~-- 189 (423)
|. +.-+|.+..-++-+.++++-.++. ++-+....+..+....+. |+..+.+ ...+.+.+.++
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVv 266 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVV 266 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEE
Confidence 32 344566666666666776666553 222333333333332222 1111110 01122222110
Q ss_pred ----------Cc-----chHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccC-------CHHHHHHHH
Q 038550 190 ----------HT-----HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG-------EVDTAINLF 247 (423)
Q Consensus 190 ----------~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~~~~ 247 (423)
-| -+..--.|+-.|.+.++.++|..+.+.+.+..+.-|-.-.-.++..| ....|.+.|
T Consensus 267 FrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqff 346 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFF 346 (557)
T ss_pred EeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Confidence 01 11122234556778888999988888887665544433222233333 344566666
Q ss_pred HHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-CC-C
Q 038550 248 EAMREDGVGYDP-VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP-VE-P 324 (423)
Q Consensus 248 ~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~-~ 324 (423)
+-.-+.+..-|. .--.++..++.-..++++...++..+...=...|...+ .+.++++..|.+.+|+++|-++. -+ .
T Consensus 347 qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik 425 (557)
T KOG3785|consen 347 QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK 425 (557)
T ss_pred HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh
Confidence 555444432222 22344455555566788888888877766333344444 46788888999999999988772 11 3
Q ss_pred CHhHHHHH-HHHHHhcCChhHHHHHHHHHHhcC-CCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhccccCC
Q 038550 325 DANIWGAL-LGACRIYGNVELGAWAAEHLFMLK-PQHC-GYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394 (423)
Q Consensus 325 ~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 394 (423)
|..+|.++ .++|.+.++.+.|-.+ +.+.+ |.+. ......+.-|.+.+.+=-|.+.|+.+...+..|+
T Consensus 426 n~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 426 NKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 55566554 4677888888876554 44444 3222 2234456678888888888888888776665554
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=1.3e-08 Score=88.07 Aligned_cols=222 Identities=13% Similarity=0.025 Sum_probs=130.7
Q ss_pred CCCccHHHHHHHHHHcC-CCC--chHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHH
Q 038550 72 HFLRPGKEIHARIIRKG-LNF--DLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLS 144 (423)
Q Consensus 72 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 144 (423)
+..+.++.-+.+++... ..| ....|..+...|...|+.++|...| +..+.+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555566666666432 112 1345666667777778887777777 3445566777778888888888888888
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-CC
Q 038550 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KD 223 (423)
Q Consensus 145 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~ 223 (423)
.|++..+.. +-+..++..+..++...|++++|.+.++...+..+... ........+...++.++|...|.+... .+
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~--~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP--YRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 888777643 22455666777777777888888888877777544322 111122223455677888877754332 12
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHc---CC--CC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhH
Q 038550 224 SASWNTLILGYGMLGEVDTAINLFEAMRED---GV--GY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 297 (423)
...|.. .......|+...+ +.+..+.+. .+ .| ...+|..+...+.+.|++++|...|++..+.+ +|+..-+
T Consensus 197 ~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~ 273 (296)
T PRK11189 197 KEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEH 273 (296)
T ss_pred ccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHH
Confidence 222221 1222234454443 234443321 11 11 34578888888888888888888888888764 3454444
Q ss_pred HH
Q 038550 298 AC 299 (423)
Q Consensus 298 ~~ 299 (423)
..
T Consensus 274 ~~ 275 (296)
T PRK11189 274 RY 275 (296)
T ss_pred HH
Confidence 33
No 78
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=3.9e-08 Score=80.11 Aligned_cols=374 Identities=10% Similarity=0.044 Sum_probs=234.9
Q ss_pred cccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHH-HHHhhcCCCCccHH
Q 038550 3 AKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNV-LPACARGHFLRPGK 78 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~ 78 (423)
.+..++++|++++....+ ++....+.|..+|....++..|.+.++++-.. .|...-|..- ...+.+.+.+..|+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHH
Confidence 456678888888877654 36677888889999999999999999998764 3555544432 34566788888999
Q ss_pred HHHHHHHHcCCCCchH--HHHHHHHHHHhcCChHHHHHHhchhc--CCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCC
Q 038550 79 EIHARIIRKGLNFDLF--LTNALTDMYAKCGCLNLAQNVFNISF--RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 154 (423)
++...|... |+.. +...-.......+++..+..+.+..+ .+..+.+...-...+.|+++.|.+-|+...+-+.
T Consensus 99 rV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 99 RVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 988877632 2221 11111223445678888888884433 4556666666677789999999999999888654
Q ss_pred CCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc----------------------------hHHHHHHHHHHHhc
Q 038550 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH----------------------------LFVANSILDFYTRS 206 (423)
Q Consensus 155 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------------------~~~~~~l~~~~~~~ 206 (423)
-.....|+..+ +..+.++.+.|.+...+++++|+... ...+|.-...+.+.
T Consensus 176 yqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 176 YQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred CCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 44556776544 55678899999999999988875321 11223333446778
Q ss_pred CCHHHHHHHhccCCCC-----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 038550 207 GRIDLANKIFDCLPVK-----DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281 (423)
Q Consensus 207 ~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 281 (423)
|+++.|.+.+-.|+++ |++|...+.-. -..+++.+..+-+.-+.+... .-..||..++-.||+..-++.|-.+
T Consensus 255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred ccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHH
Confidence 9999999999999854 66776554432 234566666666666666543 3457888888999999988888887
Q ss_pred HHHHHHcCC-CCChhhHHHHHHHHHh-cCChHHHHHHHhhCCCCCCHhHHHHHHHH--HHhcCC---hhHHHHHHHHHHh
Q 038550 282 FDEMQADSV-KPTEMHYACMVDLLGR-AGLMEDAVKLIKNLPVEPDANIWGALLGA--CRIYGN---VELGAWAAEHLFM 354 (423)
Q Consensus 282 ~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~l~~~--~~~~~~---~~~a~~~~~~~~~ 354 (423)
+.+-..... -.+...|+ |+.++.- .-.+++|++-+..+........-...+.. -...++ ...+++-+++..+
T Consensus 333 LAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE 411 (459)
T KOG4340|consen 333 LAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLE 411 (459)
T ss_pred HhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 755322211 12333343 3444443 34566666655544101000111111111 111111 2233334444444
Q ss_pred cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 355 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
+- ......-+..|.+..++..++++|+.-.+
T Consensus 412 ~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 412 KY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 32 12345556778899999999999987654
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=2.5e-08 Score=78.28 Aligned_cols=195 Identities=13% Similarity=0.060 Sum_probs=122.0
Q ss_pred HHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHH
Q 038550 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDT 242 (423)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 242 (423)
-.|...|+...|..-+++.++..+ ....++..+...|.+.|..+.|.+.|+... +.+..+.|....-+|..|++++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 344444444444444444444332 123334445555555555555555555433 3345566666677777778888
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-
Q 038550 243 AINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL- 320 (423)
Q Consensus 243 a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~- 320 (423)
|...|++......-| -..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.+...+.|++-.|..++++.
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 888887777643222 23567777777777888888888888777753 333455666777777788888888777766
Q ss_pred -CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 321 -PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 321 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
+..++..+....|+.-...||.+.+-+.-.++.+..|.++..
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 334666677667777777788887777777777777766543
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.16 E-value=2e-07 Score=83.90 Aligned_cols=350 Identities=13% Similarity=0.085 Sum_probs=170.7
Q ss_pred HhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHH
Q 038550 34 AQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ 113 (423)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 113 (423)
...|+-++|.+..+.-....+ -+.+.|+.+.-.+....++++|++.|...+..+ +.|...+.-+.-.-+..++++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 334555555555554444322 244455555444445555555555555555443 334444444443444444444333
Q ss_pred HHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcC-CCCchhhHHHHHHHH------HhHhhHHhhhHHHH
Q 038550 114 NVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISAC------ANLAAIKQGKEIHG 182 (423)
Q Consensus 114 ~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~------~~~~~~~~a~~~~~ 182 (423)
..- +..+.....|..++.++.-.|+...|..++++..+.. -.|+...|......+ ...|..+.|.+.+.
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 222 3333444555555555555566666666665555443 134444443332222 22233333433333
Q ss_pred HHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC--CChhhHHH-HHHHHhccCCHHHHH-HHHHHHHHcCCCCC
Q 038550 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNT-LILGYGMLGEVDTAI-NLFEAMREDGVGYD 258 (423)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~a~-~~~~~m~~~~~~p~ 258 (423)
.-... +......-..-...+.+.+++++|..++..+.. ||...|.. +..++.+-.+.-++. .+|....+.- |.
T Consensus 210 ~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r 286 (700)
T KOG1156|consen 210 DNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PR 286 (700)
T ss_pred hhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cc
Confidence 22211 101111112334445556666666666655542 22233322 223332222222222 3343333321 11
Q ss_pred HHHHHHH-HHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH----HHhhC-C-----------
Q 038550 259 PVSYIAI-LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK----LIKNL-P----------- 321 (423)
Q Consensus 259 ~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~-~----------- 321 (423)
......+ ++.+....-.+..-.++..+.+.|+++-. ..+...|-.....+-..+ +...+ +
T Consensus 287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 1000000 11111122233444566666666765433 333333322221111111 11111 1
Q ss_pred -CCCCHhHH--HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 322 -VEPDANIW--GALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 322 -~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
-.|....| -.++..+-..|+++.|...++.+...-|.-+..|..-++.+...|.+++|..++++..+.+.
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 14555544 44667889999999999999999999999888999999999999999999999999877654
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=2e-08 Score=81.82 Aligned_cols=284 Identities=13% Similarity=0.088 Sum_probs=187.1
Q ss_pred HHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHH-HHHHHHHh
Q 038550 96 TNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM-GAISACAN 170 (423)
Q Consensus 96 ~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~ 170 (423)
+++.+.-+.+..++++|++++ +..+++....+.|..+|-...++..|-..|+++-.. .|...-|. .-...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 344444456666777777776 333445566677777777777888888888877663 45554443 23445566
Q ss_pred HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC-CCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038550 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLILGYGMLGEVDTAINLFEA 249 (423)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 249 (423)
.+.+..|.++...|....- ........-.......+++..+..+.+..+ +.+..+.+.......+.|+++.|.+-|+.
T Consensus 91 A~i~ADALrV~~~~~D~~~-L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPA-LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred hcccHHHHHHHHHhcCCHH-HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 6777777777776654310 000111111122345678888888888887 35566666666666788999999999998
Q ss_pred HHHc-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-------------CCh--------hhHHHHHHH----
Q 038550 250 MRED-GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK-------------PTE--------MHYACMVDL---- 303 (423)
Q Consensus 250 m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~--------~~~~~l~~~---- 303 (423)
..+. |.. ....|+..+. ..+.|+.+.|.++..+++++|++ ||. ..-+.++.+
T Consensus 170 AlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 170 ALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 8775 444 4567776664 44668889999999998887754 221 112233333
Q ss_pred ---HHhcCChHHHHHHHhhCC----CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 304 ---LGRAGLMEDAVKLIKNLP----VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 304 ---~~~~~~~~~a~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
+.+.|+++.|.+.+..|+ ...|+.|...+.-. -..+++.+..+-+.-+.+.+|-.+.+|..++..||+..-+
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHH
Confidence 357789999999999883 33577776555322 2345566666777777888888888999999999999999
Q ss_pred hHHHHHHHH
Q 038550 377 DEASKVREL 385 (423)
Q Consensus 377 ~~A~~~~~~ 385 (423)
+-|..++-+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 998888754
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=5.8e-07 Score=80.20 Aligned_cols=145 Identities=14% Similarity=0.093 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH--------HHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD--------EMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 239 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
.+..+.+++...-+....-........+......|+++.|.+++. .+.+.+..|. +...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 466777777776665322223455566677888999999999999 5555444454 445566777777776
Q ss_pred HHHHHHHhhC--------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 038550 311 EDAVKLIKNL--------PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 311 ~~a~~~~~~~--------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 381 (423)
+.|..++.+. ...+. ..++..+...-.+.|+-++|..+++++.+.+|.+..+...++.+|++.. .+.|..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~ 512 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAES 512 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHH
Confidence 6666665544 11221 2233444444567799999999999999999999999999998887753 456666
Q ss_pred HHHHH
Q 038550 382 VRELM 386 (423)
Q Consensus 382 ~~~~m 386 (423)
+-+.+
T Consensus 513 l~k~L 517 (652)
T KOG2376|consen 513 LSKKL 517 (652)
T ss_pred HhhcC
Confidence 55443
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.12 E-value=1.3e-07 Score=78.59 Aligned_cols=287 Identities=15% Similarity=0.064 Sum_probs=154.4
Q ss_pred HHHHHHhcCChHHHHHHh-chhcCCcchHHH---HHHHHhcCCChhhHHHHHHHHHhcCCCCchhhH-HHHHHHHHhHhh
Q 038550 99 LTDMYAKCGCLNLAQNVF-NISFRDEVSYNI---LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF-MGAISACANLAA 173 (423)
Q Consensus 99 l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~ 173 (423)
+...+...|++.+|+..| ...+-|+..|-+ -...|...|....|+.-+.+.++ ++||-..- .--...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 444455555555555555 222223333322 23455555665556555555555 34543221 112233455566
Q ss_pred HHhhhHHHHHHHHhccCcch------------H--HHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhc
Q 038550 174 IKQGKEIHGVTIRKHLHTHL------------F--VANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGM 236 (423)
Q Consensus 174 ~~~a~~~~~~~~~~~~~~~~------------~--~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 236 (423)
++.|..-|+.+++..+.... . .....+..+.-.|+...|+.+...+. ..|...|..-..+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 66666666655554321110 0 11122333445566666666666554 3366666666777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhh----HHHH---------HHH
Q 038550 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH----YACM---------VDL 303 (423)
Q Consensus 237 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l---------~~~ 303 (423)
.|++..|+.=++...+.. .-+..++..+-..+...|+.+.++...++..+. .|+... |..| +..
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 777777766665554432 224445555555666667777777666666653 344321 1111 112
Q ss_pred HHhcCChHHHHHHHhhC-CCCCC-----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 038550 304 LGRAGLMEDAVKLIKNL-PVEPD-----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWD 377 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 377 (423)
..+.+++.++++..+.. ...|. ...+..+-.++...|++.+|++...++++.+|++..++.--+.+|.-...|+
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYD 358 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHH
Confidence 23445555555554443 33443 1233444455666777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcc
Q 038550 378 EASKVRELMKSRE 390 (423)
Q Consensus 378 ~A~~~~~~m~~~~ 390 (423)
+|+.-|++..+.+
T Consensus 359 ~AI~dye~A~e~n 371 (504)
T KOG0624|consen 359 DAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHhcC
Confidence 7777777766543
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.11 E-value=3.5e-09 Score=90.26 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=62.6
Q ss_pred HHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHH
Q 038550 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH----GGLVEK 277 (423)
Q Consensus 202 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~ 277 (423)
++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. ...+.+
T Consensus 111 i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHH
Confidence 344445555555555443 23444444445555555555555555555442 112 222222222211 123445
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 038550 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNV-ELGAWAAEHLFM 354 (423)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 354 (423)
|..+|+++.+. .+++..+.+.+..++...|++++|.+++.+. ...| ++.+...++......|+. +.+.+.+.++..
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 55555554332 2344444444444445555555555544443 2222 333333444444444443 334444444444
Q ss_pred cCCC
Q 038550 355 LKPQ 358 (423)
Q Consensus 355 ~~p~ 358 (423)
..|.
T Consensus 265 ~~p~ 268 (290)
T PF04733_consen 265 SNPN 268 (290)
T ss_dssp HTTT
T ss_pred hCCC
Confidence 4444
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.1e-07 Score=83.79 Aligned_cols=368 Identities=14% Similarity=0.051 Sum_probs=205.7
Q ss_pred cccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCc-hhHHHHHHHhhcCCCCccHH
Q 038550 3 AKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS-VTLTNVLPACARGHFLRPGK 78 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~ 78 (423)
+..|+++.|+.+|-+... +|...|+-=..+|...|++++|++=-.+-++. .|+- ..|.....++.-.|++++|.
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHH
Confidence 467999999999987543 67778888888999999999998876666653 4553 58888899999999999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhch------hcC--------CcchHHHHHHHHhcCC-------
Q 038550 79 EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI------SFR--------DEVSYNILIVGYSQTS------- 137 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------~~~--------~~~~~~~l~~~~~~~~------- 137 (423)
.-|.+-++.. +.+...++.+..++... . .+.+.|.. ... ....|..++..+-+..
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999988775 45566777777776211 1 11223310 011 1122333333221110
Q ss_pred ChhhHHHHHHHHHh--------cC-------CCC---------c-------------hhhHHHHHHHHHhHhhHHhhhHH
Q 038550 138 DCSESLSLFSEMRL--------LG-------MKH---------D-------------VVSFMGAISACANLAAIKQGKEI 180 (423)
Q Consensus 138 ~~~~a~~~~~~m~~--------~~-------~~~---------~-------------~~~~~~ll~~~~~~~~~~~a~~~ 180 (423)
..+...+..-.+.. .| ..| . ..-...+.++..+..+++.+.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 01111111111100 00 011 0 01234455566666777777777
Q ss_pred HHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCCh---hhH-------HHHHHHHhccCCHHHHHHHHHHH
Q 038550 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS---ASW-------NTLILGYGMLGEVDTAINLFEAM 250 (423)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~-------~~li~~~~~~g~~~~a~~~~~~m 250 (423)
+....... .+..-++....+|...|....+...-+...+... .-| ..+..+|.+.++++.++..|.+.
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 77776655 4445555666677777777666555444332111 112 22334566667788888888776
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHh
Q 038550 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE-MHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DAN 327 (423)
Q Consensus 251 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~ 327 (423)
......|+.. .+....+++........-. .|.. .-...-...+.+.|++..|+..|.++ ...| |..
T Consensus 325 Lte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 325 LTEHRTPDLL---------SKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred hhhhcCHHHH---------HHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 5543333321 1222223333322222221 1211 11111134455666666666666665 2334 455
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 328 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.|..-.-+|.+.|.+..|+.-.+...+++|.....|..=+.++....+|+.|.+.|.+-.+.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666666655543
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.09 E-value=5.9e-07 Score=80.66 Aligned_cols=193 Identities=13% Similarity=-0.008 Sum_probs=108.5
Q ss_pred HHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhc
Q 038550 198 SILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV-GYDP--VSYIAILTACSH 271 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~ 271 (423)
.+...+...|++++|...+++.. +.+...+..+...+...|++++|...+++...... .|+. ..|..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 44456667777777777776554 23455666667777777777777777777665422 1222 234456666777
Q ss_pred cCcHHHHHHHHHHHHHcCC-CCChhhH-H--HHHHHHHhcCChHHHHHH---HhhC----CCCCCHhHHHHHHHHHHhcC
Q 038550 272 GGLVEKGKKYFDEMQADSV-KPTEMHY-A--CMVDLLGRAGLMEDAVKL---IKNL----PVEPDANIWGALLGACRIYG 340 (423)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~----~~~~~~~~~~~l~~~~~~~~ 340 (423)
.|++++|..+++++..... .+..... + .++.-+...|....+.+. .... ..............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 7888888877777654321 1111111 1 222222333322222222 1111 00111122224556677888
Q ss_pred ChhHHHHHHHHHHhcCCC---------CcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 341 NVELGAWAAEHLFMLKPQ---------HCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 341 ~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+.+.|...++.+....-. ........+.++...|++++|.+.+.......
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888888888887653211 22334455566789999999999988887654
No 87
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.08 E-value=2.4e-06 Score=77.15 Aligned_cols=175 Identities=13% Similarity=0.041 Sum_probs=101.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC---------
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD---PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP--------- 292 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------- 292 (423)
..|-.+.+.|-..|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|.++++.....--.|
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 3467777777788888888888888776543311 2344444444556677777777777766431110
Q ss_pred --------ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCc
Q 038550 293 --------TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVE-PDANIWGALLGACRIYGNVELGAWAAEHLFMLKP--QHC 360 (423)
Q Consensus 293 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~ 360 (423)
+...|...++.--..|-++....+++++ .++ ..+.+.......+-.+.-++++.++|++.+.+.+ .--
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1223444444445566777777777766 211 1222222233334456667888888888888763 333
Q ss_pred chHHHHHHHHHh---cCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 361 GYYILLSNMYAE---AGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 361 ~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
..|+..+.-+.+ ....+.|+.+|++..+ |.+|...-+..
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiy 589 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIY 589 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 455554444432 3467888889988887 65555444333
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=2.4e-08 Score=85.21 Aligned_cols=146 Identities=13% Similarity=0.038 Sum_probs=64.5
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----hcCC
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG----RAGL 309 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 309 (423)
+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. -.+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchh
Confidence 34445555555544321 13334444445555555555555555555442 122 12222222222 1223
Q ss_pred hHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh-hHHHHHHHHH
Q 038550 310 MEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW-DEASKVRELM 386 (423)
Q Consensus 310 ~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m 386 (423)
+.+|.-+|+++ ...+++.+.+.+..+....|++++|..+++++.+.+|.++.+...++.+....|+. +.+.+++.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 55555555555 22344445555555555555555555555555555555555555555444444444 3344444444
Q ss_pred Hh
Q 038550 387 KS 388 (423)
Q Consensus 387 ~~ 388 (423)
..
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 89
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=1e-08 Score=90.78 Aligned_cols=219 Identities=13% Similarity=0.043 Sum_probs=170.6
Q ss_pred HHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHH
Q 038550 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTA 243 (423)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a 243 (423)
-+.+.|++.+|.-.|+..++.++ -+...|..|.......++-..|+..+.+.. +.|......|.-+|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 34567888889889998888765 346777778888888888888888877665 44677888888899999999999
Q ss_pred HHHHHHHHHcCCC-----C---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHH
Q 038550 244 INLFEAMREDGVG-----Y---DPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAV 314 (423)
Q Consensus 244 ~~~~~~m~~~~~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 314 (423)
+..++..+....+ + +...-.. ..+.....+....++|-++... +..+|..++..|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999987654311 0 0000000 1222333444555666665555 55588889999999999999999999
Q ss_pred HHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 315 KLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 315 ~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
+.|+.+ .++| |..+||.|...+....+.++|+..|.+++++.|.-.++...|+..|...|.|++|...|-....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999987 7788 6779999999999999999999999999999999999999999999999999999998876544
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.8e-06 Score=75.17 Aligned_cols=353 Identities=10% Similarity=-0.001 Sum_probs=184.4
Q ss_pred HHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChH
Q 038550 31 ANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN 110 (423)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 110 (423)
+.+..+|++++|.+...++...+ +-+...+..-+-++.+.+.++.|+.+.+.-... ..+..-+--=..+..+.+..+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHH
Confidence 33455556666666666665543 233344455555555555555555433321100 000000001112233455666
Q ss_pred HHHHHhchhcCCcc-hHHHHHHHHhcCCChhhHHHHHHHHHhcC----------------------------CCCchhhH
Q 038550 111 LAQNVFNISFRDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLG----------------------------MKHDVVSF 161 (423)
Q Consensus 111 ~a~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----------------------------~~~~~~~~ 161 (423)
+|...+....++.. +...-...+-+.+++++|+++|+.+.+++ ..| ..+|
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~-e~sy 175 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP-EDSY 175 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC-cchH
Confidence 66655543333222 34444455555666666666665553332 122 2244
Q ss_pred HHHHH---HHHhHhhHHhhhHHHHHHHHhcc-------------CcchH-HHHHHHHHHHhcCCHHHHHHHhccCCC---
Q 038550 162 MGAIS---ACANLAAIKQGKEIHGVTIRKHL-------------HTHLF-VANSILDFYTRSGRIDLANKIFDCLPV--- 221 (423)
Q Consensus 162 ~~ll~---~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 221 (423)
..+.+ .+...|++.+|+++++...+.+. ..... .-..+.-++...|+-++|..++..+.+
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 44433 44567899999999988843221 11111 112344567778999999998876542
Q ss_pred CCh----hhHHHHHHHHhc---------------------------------------------cCCHHHHHHHHHHHHH
Q 038550 222 KDS----ASWNTLILGYGM---------------------------------------------LGEVDTAINLFEAMRE 252 (423)
Q Consensus 222 ~~~----~~~~~li~~~~~---------------------------------------------~g~~~~a~~~~~~m~~ 252 (423)
+|. ..-|.++..-.. .+..+.+.++.....
T Consensus 256 ~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp- 334 (652)
T KOG2376|consen 256 ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP- 334 (652)
T ss_pred CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC-
Confidence 111 111111111000 011111111111100
Q ss_pred cCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHh--------hC-C
Q 038550 253 DGVGYDPVSYIAILTACS--HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK--------NL-P 321 (423)
Q Consensus 253 ~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~-~ 321 (423)
+-.|. ..+..++..+. +...+..+..++....+....-...+...+++.....|+++.|.+++. .+ .
T Consensus 335 -~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 335 -GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred -ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 11222 23334443322 223466777777777665322234566667788889999999999988 33 2
Q ss_pred CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFML----KPQ---HCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 322 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+.-.+.+...+...+.+.++.+.|..++..+..- .+. ...++..++..-.+.|+-++|..+++++.+.+
T Consensus 413 ~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 413 AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 3344556666777778888888888888777552 122 22345555666678899999999999998754
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=6.9e-07 Score=74.82 Aligned_cols=351 Identities=12% Similarity=0.030 Sum_probs=196.5
Q ss_pred HHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCh
Q 038550 30 VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL 109 (423)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 109 (423)
+.-+...+++..|+.+++.-...+-.....+-.-+..++.+.|++++|...+..+.+.. .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 56677888999999999877654432222333334566778999999999999988755 56667777777777788889
Q ss_pred HHHHHHhchhcCCcchHHHHHHHHhc------------------------------CCChhhHHHHHHHHHhcCCCCchh
Q 038550 110 NLAQNVFNISFRDEVSYNILIVGYSQ------------------------------TSDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 110 ~~a~~~~~~~~~~~~~~~~l~~~~~~------------------------------~~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
.+|..+-...+.++..-..|...-.+ .-.+.+|+++|++.+.. .|+-.
T Consensus 108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~ 185 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYI 185 (557)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhhh
Confidence 99888874444433332223222222 33455666666666543 23333
Q ss_pred hHHHHH-HHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc--CCHH--HHHHHhccCC--------------
Q 038550 160 SFMGAI-SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS--GRID--LANKIFDCLP-------------- 220 (423)
Q Consensus 160 ~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~--~A~~~~~~~~-------------- 220 (423)
..+.-+ -+|.+..-++-+.+++..-++.-+ .+....|.......+. |+.. +-..+.+...
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~p-dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFP-DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCC-CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 443322 233455555555555555444322 2222223222222221 1111 1111111111
Q ss_pred -----------------CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HhccCcHHHH
Q 038550 221 -----------------VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA-----CSHGGLVEKG 278 (423)
Q Consensus 221 -----------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-----~~~~~~~~~a 278 (423)
+.-+..-..++-.|.+.+++.+|..+.+++.- ..|-....-.+..+ ........-|
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 11122233344456677788777777665431 12222111111111 1112234455
Q ss_pred HHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 279 KKYFDEMQADSVKPT-EMHYACMVDLLGRAGLMEDAVKLIKNLP--VEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355 (423)
Q Consensus 279 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 355 (423)
.+.|+..-..+..-| ..--.++..++.-..++++.+-.++.+. +..|....-.+..+.+..|++.+|+++|-++...
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 565655444433322 2223344555556667777777777662 2333344445778999999999999999998877
Q ss_pred CCCCcchH-HHHHHHHHhcCChhHHHHHHHHH
Q 038550 356 KPQHCGYY-ILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 356 ~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
+-.+..+| ..|+++|.+.|+.+-|+.++-++
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 75555555 46789999999999998887655
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.99 E-value=2.7e-06 Score=76.39 Aligned_cols=56 Identities=18% Similarity=-0.084 Sum_probs=31.5
Q ss_pred HHHHHHhcCChHHHHHHHhhCC---CC----C----CHhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 300 MVDLLGRAGLMEDAVKLIKNLP---VE----P----DANIWGALLGACRIYGNVELGAWAAEHLFML 355 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~~---~~----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 355 (423)
...++...|+.+.|...++.+. .. . .........-++...|+.++|.+.+..+...
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566777777777776651 01 0 0111112223456778888888888777653
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=3.5e-07 Score=84.61 Aligned_cols=350 Identities=15% Similarity=0.081 Sum_probs=198.3
Q ss_pred ccccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhC-C--------CCCCchhHHHHHHHhhcCC
Q 038550 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-N--------EFPNSVTLTNVLPACARGH 72 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--------~~p~~~~~~~l~~~~~~~~ 72 (423)
|.--|+.++|.+-.+.+ ++...|..|.+.|.+.++++-|.-.+-.|... | -.|+ .+-..+.-.....|
T Consensus 738 yvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred EEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 44457777777666666 45577888888888888888877777666432 1 0122 22222333345677
Q ss_pred CCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhc--CCcchHHHHHHHHhcCCChhhHHHHHHHHH
Q 038550 73 FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF--RDEVSYNILIVGYSQTSDCSESLSLFSEMR 150 (423)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 150 (423)
.+++|+.+|++-.+.+ .|-..|-..|.+++|.++-+... .=..||.....-+-..++.+.|++.|++..
T Consensus 815 MlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred hHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 8888888888776543 34556777888888888873221 123456666666667777888877776532
Q ss_pred ----------hcC---------CCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHH
Q 038550 151 ----------LLG---------MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211 (423)
Q Consensus 151 ----------~~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 211 (423)
... -.-|...|.-...-+-..|+.+.|+.+|+.... |-+++...|-.|+.++
T Consensus 886 ~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 886 VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDK 956 (1416)
T ss_pred ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchH
Confidence 111 011222222233333444555555555554433 2345555566666666
Q ss_pred HHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC--CC------CCHHHHHHHHHHHhccCcHHHHHHHHH
Q 038550 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG--VG------YDPVSYIAILTACSHGGLVEKGKKYFD 283 (423)
Q Consensus 212 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~------p~~~~~~~ll~~~~~~~~~~~a~~~~~ 283 (423)
|-++-++-. |......+.+.|-..|++.+|...|.+..... ++ .+...+|.. ......+.-.|-.+|+
T Consensus 957 Aa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nla--l~s~~~d~v~aArYyE 1032 (1416)
T KOG3617|consen 957 AARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLA--LMSGGSDLVSAARYYE 1032 (1416)
T ss_pred HHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--hhcCchhHHHHHHHHH
Confidence 666655433 55666677788888888888888877654210 00 011111110 1112223333334443
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH-Hhh------------CCCCCCHhHHHHHHHHHHhcCChhHHHHHHH
Q 038550 284 EMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL-IKN------------LPVEPDANIWGALLGACRIYGNVELGAWAAE 350 (423)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 350 (423)
+. |.. +..-+..|-++|.+.+|+++ |+. +.-..|+...+.-...+....++++|..++-
T Consensus 1033 e~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~ 1104 (1416)
T KOG3617|consen 1033 EL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLC 1104 (1416)
T ss_pred Hc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 32 211 12234557777887777765 221 1223467777777788888888888877665
Q ss_pred HHHhc----------------------CCC---C------cchHHHHHHHHHhcCChhHHHHHHH
Q 038550 351 HLFML----------------------KPQ---H------CGYYILLSNMYAEAGKWDEASKVRE 384 (423)
Q Consensus 351 ~~~~~----------------------~p~---~------~~~~~~l~~~~~~~g~~~~A~~~~~ 384 (423)
.+.+. -|. . ......+++.|.++|.|-.|.+-|.
T Consensus 1105 ~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1105 LAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 44331 011 0 1346678888999998877765443
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.99 E-value=2.1e-06 Score=87.12 Aligned_cols=323 Identities=11% Similarity=-0.041 Sum_probs=193.5
Q ss_pred hhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhch----hcC-C---c-----chHHHHHHHHh
Q 038550 68 CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI----SFR-D---E-----VSYNILIVGYS 134 (423)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~-~---~-----~~~~~l~~~~~ 134 (423)
....|+++.+...++.+.......++.........+...|+++++...+.. ... + . .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 444566666666655542111112222333444556677888888877721 111 0 1 11222334556
Q ss_pred cCCChhhHHHHHHHHHhcCCCCch----hhHHHHHHHHHhHhhHHhhhHHHHHHHHhcc-----CcchHHHHHHHHHHHh
Q 038550 135 QTSDCSESLSLFSEMRLLGMKHDV----VSFMGAISACANLAAIKQGKEIHGVTIRKHL-----HTHLFVANSILDFYTR 205 (423)
Q Consensus 135 ~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~ 205 (423)
..|+++.|...+++....-...+. ...+.+...+...|+++.|...+++...... .........+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788999999999887663111121 2334455566778899999888887765321 1112344556677888
Q ss_pred cCCHHHHHHHhccCCC-------C----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHh
Q 038550 206 SGRIDLANKIFDCLPV-------K----DSASWNTLILGYGMLGEVDTAINLFEAMREDG--VGY--DPVSYIAILTACS 270 (423)
Q Consensus 206 ~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p--~~~~~~~ll~~~~ 270 (423)
.|+++.|...+++... + ....+..+...+...|++++|...+++..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8999999888765431 1 12234445556677799999998888865421 112 2234444556677
Q ss_pred ccCcHHHHHHHHHHHHHcCC-CCChhhH-----HHHHHHHHhcCChHHHHHHHhhCCC-C-CCH----hHHHHHHHHHHh
Q 038550 271 HGGLVEKGKKYFDEMQADSV-KPTEMHY-----ACMVDLLGRAGLMEDAVKLIKNLPV-E-PDA----NIWGALLGACRI 338 (423)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~----~~~~~l~~~~~~ 338 (423)
..|+++.|...++......- ......+ ...+..+...|+.+.|...+..... . ... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 88999999988888755310 1111111 1122344567888999888876621 1 111 113456677888
Q ss_pred cCChhHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 339 YGNVELGAWAAEHLFMLK------PQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.|+.++|...++++.... +....+...++.++.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999998887642 1122356677788889999999999988887654
No 95
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.98 E-value=1.6e-05 Score=72.13 Aligned_cols=215 Identities=13% Similarity=0.103 Sum_probs=139.4
Q ss_pred hhHHhhhHHHHHHHHh-cc----CcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCCh-------hhHHHHHHHHhccCC
Q 038550 172 AAIKQGKEIHGVTIRK-HL----HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS-------ASWNTLILGYGMLGE 239 (423)
Q Consensus 172 ~~~~~a~~~~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~ 239 (423)
|+..+....+.++++. ++ -.....|..+...|-..|+++.|..+|++..+-+- .+|-.....=.+..+
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence 4444555555555542 11 11234566788899999999999999998875433 344444555556788
Q ss_pred HHHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 240 VDTAINLFEAMREDGVG----------Y-------DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~----------p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
++.|+.+++......-. | +...|...+......|-++....+|+++.+..+.......| ...
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAm 519 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAM 519 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHH
Confidence 99999988876542111 1 22345666666666788999999999999885432222222 223
Q ss_pred HHHhcCChHHHHHHHhhC-C-C-CCCH-hHHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCc--chHHHHHHHHHhc
Q 038550 303 LLGRAGLMEDAVKLIKNL-P-V-EPDA-NIWGALLGACRI---YGNVELGAWAAEHLFMLKPQHC--GYYILLSNMYAEA 373 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~-~-~-~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~ 373 (423)
.+-...-++++.+++++- . + -|++ .+|+..+.-+.+ ....+.|..+|+++++.-|+.. .+|...+..-.+-
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEH 599 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 345566789999999875 2 2 2443 478888866543 2468999999999999766432 2244444444566
Q ss_pred CChhHHHHHHHHHH
Q 038550 374 GKWDEASKVRELMK 387 (423)
Q Consensus 374 g~~~~A~~~~~~m~ 387 (423)
|....|+.++++..
T Consensus 600 GLar~amsiyerat 613 (835)
T KOG2047|consen 600 GLARHAMSIYERAT 613 (835)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888888854
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.96 E-value=1.2e-07 Score=76.34 Aligned_cols=119 Identities=9% Similarity=0.070 Sum_probs=90.0
Q ss_pred cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHH-HhcCC--hhHHH
Q 038550 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGAC-RIYGN--VELGA 346 (423)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~-~~~~~--~~~a~ 346 (423)
.++.+++...++...+.. +.+...|..+...|...|++++|...|++. .+.| +...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 556667777777766654 567777888888888888888888888877 4555 566666666653 56666 48888
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 347 WAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 347 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
.+++++.+.+|.++.++..++..+.+.|++++|+..++++.+...
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888888888888888888888888888888888888888877554
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=2.9e-06 Score=86.14 Aligned_cols=356 Identities=10% Similarity=-0.010 Sum_probs=221.9
Q ss_pred cccCCcchhHHhhcccCCcChhh--HHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHH
Q 038550 3 AKSSRPAEASYLFHNIAEKNIVS--WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 80 (423)
...|++.+|.............. ...........|++..+..+++.+.......+..........+...|+++++...
T Consensus 352 ~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~ 431 (903)
T PRK04841 352 LAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTL 431 (903)
T ss_pred HHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHH
Confidence 35677777777666665432211 1222234556788888888877764322222333333444556678899999999
Q ss_pred HHHHHHcCC------CCc--hHHHHHHHHHHHhcCChHHHHHHhch----hcC-Cc----chHHHHHHHHhcCCChhhHH
Q 038550 81 HARIIRKGL------NFD--LFLTNALTDMYAKCGCLNLAQNVFNI----SFR-DE----VSYNILIVGYSQTSDCSESL 143 (423)
Q Consensus 81 ~~~~~~~~~------~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~-~~----~~~~~l~~~~~~~~~~~~a~ 143 (423)
+....+.-- .+. ......+...+...|++++|...++. .+. +. ...+.+...+...|+++.|.
T Consensus 432 l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~ 511 (903)
T PRK04841 432 LARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARAL 511 (903)
T ss_pred HHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 887754311 111 12223334556788999999988821 111 11 23466677788899999999
Q ss_pred HHHHHHHhcCC---CCc--hhhHHHHHHHHHhHhhHHhhhHHHHHHHHh----ccC--c-chHHHHHHHHHHHhcCCHHH
Q 038550 144 SLFSEMRLLGM---KHD--VVSFMGAISACANLAAIKQGKEIHGVTIRK----HLH--T-HLFVANSILDFYTRSGRIDL 211 (423)
Q Consensus 144 ~~~~~m~~~~~---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~ 211 (423)
..+.+.....- .+. ..++..+...+...|+++.|...+++.... +.. + ....+..+...+...|++++
T Consensus 512 ~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 591 (903)
T PRK04841 512 AMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDE 591 (903)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99988865311 111 234455666778889999999998877653 211 1 22334455667778899999
Q ss_pred HHHHhccCCC------C--ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCCHH--HH--HHHHHHHhccCcHHH
Q 038550 212 ANKIFDCLPV------K--DSASWNTLILGYGMLGEVDTAINLFEAMREDG--VGYDPV--SY--IAILTACSHGGLVEK 277 (423)
Q Consensus 212 A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~--~~--~~ll~~~~~~~~~~~ 277 (423)
|...+++... + ....+..+...+...|+++.|.+.+.+..... ...... .. ...+..+...|+.+.
T Consensus 592 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 671 (903)
T PRK04841 592 AEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEA 671 (903)
T ss_pred HHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHH
Confidence 9988876531 1 12344456667788999999999998875421 111110 10 112234455789999
Q ss_pred HHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHhhC-------CCCCC-HhHHHHHHHHHHhcCChhHHH
Q 038550 278 GKKYFDEMQADSVKPT---EMHYACMVDLLGRAGLMEDAVKLIKNL-------PVEPD-ANIWGALLGACRIYGNVELGA 346 (423)
Q Consensus 278 a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~a~ 346 (423)
|...+........... ...+..+..++...|+.++|...+++. +..++ ..+...+..++...|+.++|.
T Consensus 672 A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 672 AANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9988777554311111 111345667788999999999988876 22222 235666678889999999999
Q ss_pred HHHHHHHhcCCC
Q 038550 347 WAAEHLFMLKPQ 358 (423)
Q Consensus 347 ~~~~~~~~~~p~ 358 (423)
..++++.+....
T Consensus 752 ~~L~~Al~la~~ 763 (903)
T PRK04841 752 RVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHhCc
Confidence 999999987643
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.93 E-value=3.1e-06 Score=70.68 Aligned_cols=312 Identities=8% Similarity=0.001 Sum_probs=176.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHH---HHHhhcCCCCccHHHHHHHHHHcCCCCchHH-HHH
Q 038550 23 IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNV---LPACARGHFLRPGKEIHARIIRKGLNFDLFL-TNA 98 (423)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 98 (423)
+.-.--+...+...|++..|+.-|....+. |+..|..+ ...|...|+-..|+.-+...++. +||-.. ...
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 344445667778888888888888877763 33444443 44577788888888888888766 566432 223
Q ss_pred HHHHHHhcCChHHHHHHhchh-cCCc------ch------------HHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh
Q 038550 99 LTDMYAKCGCLNLAQNVFNIS-FRDE------VS------------YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 99 l~~~~~~~g~~~~a~~~~~~~-~~~~------~~------------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
-...+.+.|.++.|..-|+.. ..++ .+ ....+..+...|+...|+..+..+++.. +.|..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 345677888888888777221 1110 01 1122334445566666666666665542 44555
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCC
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (423)
.|..-..+|...|.+..|+.-+....+.....+...| .+...+...|+.+.++..+++..+-|+..-.+ |..-..
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~y-kis~L~Y~vgd~~~sL~~iRECLKldpdHK~C----f~~YKk 265 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHY-KISQLLYTVGDAENSLKEIRECLKLDPDHKLC----FPFYKK 265 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHH-HHHHHHHhhhhHHHHHHHHHHHHccCcchhhH----HHHHHH
Confidence 5555556666666666665555555444333322222 34444445555555544444433221111000 000001
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChHHHHHH
Q 038550 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMHYACMVDLLGRAGLMEDAVKL 316 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 316 (423)
..+....++.| ......+++.++.+-.+...+..... ....+..+..++...|++.+|++.
T Consensus 266 lkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 266 LKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred HHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 11111111111 12334566667777777766653221 123445566777788888888887
Q ss_pred HhhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 317 IKNL-PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 317 ~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
-.+. .+.|| +.++..-..+|.-...++.|+.-|+.+.+.++++..+
T Consensus 330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 7766 66665 6677777788888888899999999888888876543
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=1.4e-06 Score=80.71 Aligned_cols=336 Identities=13% Similarity=0.096 Sum_probs=219.1
Q ss_pred ChhhHHHHHH--HHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHc-C--------CC
Q 038550 22 NIVSWNAMVA--NFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRK-G--------LN 90 (423)
Q Consensus 22 ~~~~~~~ll~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~ 90 (423)
|..+-..+++ .|..-|+.+.|.+-.+.++ +...|..+.+.|.+.++++-|.-.+..|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 5666667764 4778899999998877665 4567999999999999999998887777532 1 11
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 038550 91 FDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170 (423)
Q Consensus 91 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 170 (423)
|+ .+-....-.-...|.+++|..+|+..++ |..|-..|...|.|++|+++-+.=-.-. =..||..-..-+-.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR----YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEA 870 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHh
Confidence 21 2222222334577999999999955433 6667778888999999998876432211 23467777777778
Q ss_pred HhhHHhhhHHHHHH----------HHhc---------cCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHH
Q 038550 171 LAAIKQGKEIHGVT----------IRKH---------LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231 (423)
Q Consensus 171 ~~~~~~a~~~~~~~----------~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 231 (423)
.++.+.|+++|++. +... -..+...|..-...+-..|+.+.|+.+|.... -|-.++
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~V 945 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMV 945 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhhe
Confidence 88899988888643 2211 12344455555666667788888888887544 467777
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC--CC--CChhhHHHHHHHHH--
Q 038550 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS--VK--PTEMHYACMVDLLG-- 305 (423)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~-- 305 (423)
+..|-.|+.++|-++-++-. |....-.+...|...|++.+|..+|.+..... ++ ..-..-..|.....
T Consensus 946 rI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred eeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 88888899999888766532 55667778889999999999999998876421 00 00001112222222
Q ss_pred hcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHH----------HhcCC-CCcchHHHHHHHHHhcC
Q 038550 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL----------FMLKP-QHCGYYILLSNMYAEAG 374 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~p-~~~~~~~~l~~~~~~~g 374 (423)
...+.-.|-++|++.|... ......|.+.|.+.+|+++.=+- ..++| .+|.....-++.++...
T Consensus 1020 ~~~d~v~aArYyEe~g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELGGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred CchhHHHHHHHHHHcchhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 2334556667777775222 22234466777777776543221 22333 45667777777788888
Q ss_pred ChhHHHHHHHHHH
Q 038550 375 KWDEASKVRELMK 387 (423)
Q Consensus 375 ~~~~A~~~~~~m~ 387 (423)
+|++|..++....
T Consensus 1095 qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887765543
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=3.1e-07 Score=77.07 Aligned_cols=181 Identities=14% Similarity=-0.000 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhccCCC--C-Ch---hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC-HHHHHH
Q 038550 193 LFVANSILDFYTRSGRIDLANKIFDCLPV--K-DS---ASWNTLILGYGMLGEVDTAINLFEAMREDGVG-YD-PVSYIA 264 (423)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~-~~~~~~ 264 (423)
...+..+...+.+.|+++.|...|+++.. | +. .++..+..++...|++++|...++++.+.... |. ..++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 33444555566666666666666665542 1 11 24455566666666666666666666654221 11 013333
Q ss_pred HHHHHhcc--------CcHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHH
Q 038550 265 ILTACSHG--------GLVEKGKKYFDEMQADSVKPTE-MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335 (423)
Q Consensus 265 ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~ 335 (423)
+..++... |++++|.+.++.+.... |+. ..+..+..... ..... ......+...
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a~~ 175 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL-----------AGKELYVARF 175 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH-----------HHHHHHHHHH
Confidence 33444333 55666666666666542 222 12211111100 00000 0011245567
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 336 CRIYGNVELGAWAAEHLFMLKPQHC---GYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 336 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+...|++++|+..++++.+..|.++ ..+..++.++.+.|++++|..+++.+....
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8899999999999999999877654 678899999999999999999998887643
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=6.7e-06 Score=72.87 Aligned_cols=336 Identities=13% Similarity=-0.002 Sum_probs=190.1
Q ss_pred HHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCh
Q 038550 31 ANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD-LFLTNALTDMYAKCGCL 109 (423)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 109 (423)
.+....|+++.|+.+|.+.+... ++|...|..-..++++.|++++|.+--.+-++. .|+ +..|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34567788888888888887764 347778888888888888888888776666655 444 45677788888888888
Q ss_pred HHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHH-----HHHhHhhHHhhhHH
Q 038550 110 NLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS-----ACANLAAIKQGKEI 180 (423)
Q Consensus 110 ~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-----~~~~~~~~~~a~~~ 180 (423)
++|+..| +..+.|...++.+..++.. +.+. +.. ..++..+..+.. .+.....+. .+
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~----~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~---~~ 151 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLE----DYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYV---KI 151 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhH----HHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHH---HH
Confidence 8888888 3345566667777766611 1111 111 011111111110 011111111 11
Q ss_pred HHHHHHhccCcchHH---HHHHHHHHHhcCCHHH----HHHHh--ccCCCC----------------------ChhhHHH
Q 038550 181 HGVTIRKHLHTHLFV---ANSILDFYTRSGRIDL----ANKIF--DCLPVK----------------------DSASWNT 229 (423)
Q Consensus 181 ~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~----A~~~~--~~~~~~----------------------~~~~~~~ 229 (423)
++.+.. ++ .+... ...++.+.......+. +.... ..+..| -..-...
T Consensus 152 l~~~~~-~p-~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 152 LEIIQK-NP-TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HHHhhc-Cc-HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 111111 00 00000 0011111111000000 00000 000000 0112445
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHH-------HHH
Q 038550 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC-------MVD 302 (423)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~ 302 (423)
+..+..+..+++.|.+-+....+.. -+..-++....+|...|.+.++...-....+.|-. ...-|+. +..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 6666667777888888888777654 24444455556677777777776666666555421 2222222 233
Q ss_pred HHHhcCChHHHHHHHhhC---C------------------------CCCCHh-HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 303 LLGRAGLMEDAVKLIKNL---P------------------------VEPDAN-IWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~---~------------------------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
+|.+.++++.++..|.+. . +.|... -...-...+.+.|++..|+..|.+++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 455566777777777654 1 223221 111123667899999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 355 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+|+++..|...+-+|.+.|.+.+|+.-.+...+.
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999876666554
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=2.8e-07 Score=70.24 Aligned_cols=104 Identities=9% Similarity=-0.066 Sum_probs=55.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCC
Q 038550 264 AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGN 341 (423)
Q Consensus 264 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 341 (423)
.+..++...|++++|...|+.+.... +.+...|..+..++...|++++|...|++. ...| +...+..+..++...|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 34445555555555555555555542 334455555555555555555555555555 3333 44455555555555555
Q ss_pred hhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 342 VELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 342 ~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
.++|+..++++.+..|.++..+.....
T Consensus 108 ~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 108 PGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 555555555555555555555544443
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.82 E-value=8.7e-07 Score=71.35 Aligned_cols=156 Identities=12% Similarity=0.077 Sum_probs=103.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038550 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307 (423)
Q Consensus 228 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (423)
..+-..+...|+-+....+........ +-|.......+....+.|++..|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 344455556666666666666544331 2244445556666777777777777777776653 56777777777777777
Q ss_pred CChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 308 GLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 308 ~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
|+++.|..-|.+. .+.| ++...+.+.-.+.-.||.+.|..++.......+.+..+-..++......|++++|..+...
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777777766665 4444 4556677777777777777777777777777777777777777777777777777766544
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.81 E-value=5.3e-06 Score=76.24 Aligned_cols=111 Identities=17% Similarity=0.207 Sum_probs=61.4
Q ss_pred HHHHHhcCCHHHHHHHhccCCCCChh--hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 038550 200 LDFYTRSGRIDLANKIFDCLPVKDSA--SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 277 (423)
+.+-.....|.+|+.+++.+...+.. -|..+...|+..|+++.|.++|.+.- .++-.|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 34445556677777777766644332 35556666777777777777665421 23444566677777776
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038550 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321 (423)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (423)
|.++-.+.. |...+...|..-..-+-+.|++.+|++++-.++
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 666554432 223334444444444445555555555554443
No 105
>PLN02789 farnesyltranstransferase
Probab=98.80 E-value=9.4e-06 Score=70.39 Aligned_cols=227 Identities=9% Similarity=0.027 Sum_probs=121.8
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHhcCCCCch-hhHHHHHHHHHhHh-hHHhhhHHHHHHHHhccCcchHHHHHHHHHH
Q 038550 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV-VSFMGAISACANLA-AIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203 (423)
Q Consensus 126 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (423)
+..+-..+...+..++|+.+..++++. .|+. .+|+....++...| +++++...++.+.+.+++. ..+|+....++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-yqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-YQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-hHHhHHHHHHH
Confidence 333444555667778888888888764 3433 34444444444444 4566666666666554322 12222222222
Q ss_pred HhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 038550 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283 (423)
Q Consensus 204 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 283 (423)
.+.|+. ..++++.+++++.+...+ +..+|+....++...|+++++++.++
T Consensus 117 ~~l~~~-----------------------------~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 117 EKLGPD-----------------------------AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHcCch-----------------------------hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 222221 113445555555554322 45555555555555666666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhc---CC----hHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhc----CChhHHHHHHH
Q 038550 284 EMQADSVKPTEMHYACMVDLLGRA---GL----MEDAVKLIKNL-PVEP-DANIWGALLGACRIY----GNVELGAWAAE 350 (423)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~----~~~~~a~~~~~ 350 (423)
++++.+ +-|...|+.....+.+. |. .++.+++..++ ...| |...|+.+...+... ++..+|...+.
T Consensus 167 ~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 167 QLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred HHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 666554 23344444443333332 11 13444444333 4445 555666666665552 34456777777
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcC------------------ChhHHHHHHHHH
Q 038550 351 HLFMLKPQHCGYYILLSNMYAEAG------------------KWDEASKVRELM 386 (423)
Q Consensus 351 ~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m 386 (423)
++...+|.++.+...|+..|+... ..++|..+++.+
T Consensus 246 ~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 246 EVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 777777877778888888887632 336688888877
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.8e-05 Score=75.36 Aligned_cols=320 Identities=11% Similarity=0.052 Sum_probs=207.4
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCC--CCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCch-----
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF--PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDL----- 93 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----- 93 (423)
.|+..-+..+.++...+-+.+-+++++++.-.+.. -+...-+.++-...+ -+...+.+..+++-..+ .|+.
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~ia~iai 1059 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APDIAEIAI 1059 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chhHHHHHh
Confidence 46666777788888888888888888887644211 111222333333322 23444555555544332 1211
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHh-c-h-----------hcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCch
Q 038550 94 --FLTNALTDMYAKCGCLNLAQNVF-N-I-----------SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158 (423)
Q Consensus 94 --~~~~~l~~~~~~~g~~~~a~~~~-~-~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 158 (423)
..|.-....|-+......|.+++ + . .-..+..|..+..+-.+.|.+.+|++-|-+. -|+
T Consensus 1060 ~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDp 1133 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDP 1133 (1666)
T ss_pred hhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCc
Confidence 11222222222333333333333 0 0 0124567899999999999998888776432 356
Q ss_pred hhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccC
Q 038550 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238 (423)
Q Consensus 159 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 238 (423)
..|..++....+.|.+++-.+++...++..-.|... +.|+-+|.+.+++.+-++++. .||.........-|...|
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhh
Confidence 789999999999999999999999988887777665 568899999999988777653 466667777777788888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHh
Q 038550 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318 (423)
Q Consensus 239 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (423)
.++.|.-+|. +...|..+...+...|++..|...-++. .+..+|..+..+|...+.+.-|.
T Consensus 1209 ~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ---- 1269 (1666)
T KOG0985|consen 1209 MYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ---- 1269 (1666)
T ss_pred hhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH----
Confidence 8888876665 3445777777788888887777654443 34567777777777666554332
Q ss_pred hCC--CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 319 NLP--VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 319 ~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
-.| +-....-..-|+..|-..|-+++.+.+++....+...+...|..|+-.|.+
T Consensus 1270 iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1270 ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 113 223455566777888888888888888888877777666677766655544
No 107
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.78 E-value=4.3e-06 Score=76.84 Aligned_cols=166 Identities=16% Similarity=0.204 Sum_probs=83.2
Q ss_pred HHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHH
Q 038550 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245 (423)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 245 (423)
.+......|.+|..+++.+...... ..-|..+.+-|...|+++.|.++|.+.. .++-.|..|.+.|+|++|.+
T Consensus 740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHH
Confidence 3444555666666666666554332 2234455666666777777776665432 34455666667777777666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCC
Q 038550 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD 325 (423)
Q Consensus 246 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 325 (423)
+-.+... .......|..-..-+-+.|++.+|+++|-.+ | .|+. -|.+|-+.|..+..+++..+-.-..-
T Consensus 813 la~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 813 LAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred HHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHhChhhh
Confidence 6554432 2223334444444455566666665554222 1 2322 24455555555555555554411122
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHH
Q 038550 326 ANIWGALLGACRIYGNVELGAWAA 349 (423)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~a~~~~ 349 (423)
..|...+..-+-..|+...|+.-|
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHH
Confidence 233334444444444444444333
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=1.1e-06 Score=85.79 Aligned_cols=198 Identities=15% Similarity=0.162 Sum_probs=105.4
Q ss_pred hhhHHHHHHHHHhHhhHHhhhHHHHHHHHh-ccC---cchHHHHHHHHHHHhcCCHHHHHHHhccCCCC-C-hhhHHHHH
Q 038550 158 VVSFMGAISACANLAAIKQGKEIHGVTIRK-HLH---THLFVANSILDFYTRSGRIDLANKIFDCLPVK-D-SASWNTLI 231 (423)
Q Consensus 158 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~li 231 (423)
...|...|......+++++|.++.++++.. ++. --...|.++++.-..-|.-+...++|++..+- | ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 344555555556666666666666665542 111 11233444455444455555556666655432 2 23455566
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCh
Q 038550 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK-PTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 310 (423)
..|.+.+.+++|.++++.|.++ +.-....|...+..+.++++.+.|..++.++.+.-.+ -........+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6666666666666666666554 2234455666666666666666666666666554111 0122333334444556666
Q ss_pred HHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038550 311 EDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLK 356 (423)
Q Consensus 311 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 356 (423)
+++..+|+.. .-.| -...|+.+++.-.++|+.+.+..+|+++..+.
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 6666666554 1122 34456666666666666666666666665554
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=1.7e-07 Score=71.42 Aligned_cols=108 Identities=14% Similarity=0.001 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038550 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLK 356 (423)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 356 (423)
+.++++..+. .|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|+..|+++.+.+
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3456666653 4543 445677889999999999999987 5566 77789999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 357 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
|.++.++..++.++...|++++|+..+++..+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999997744
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.5e-06 Score=77.49 Aligned_cols=254 Identities=12% Similarity=0.088 Sum_probs=153.1
Q ss_pred HHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhh
Q 038550 103 YAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178 (423)
Q Consensus 103 ~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 178 (423)
+.+.|++.+|.-.| ...+.+..+|-.|.......++-..|+..+++.++.. +-+......|.-.|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 34555566665555 2233455566666666666666666666666665532 234445555555556666555555
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH-HHcCCCC
Q 038550 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM-REDGVGY 257 (423)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~~~~p 257 (423)
..++.-+...++-- + +. ...++...-+. ..+..........++|-++ .+.+..+
T Consensus 374 ~~L~~Wi~~~p~y~---~--l~------------------~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~ 428 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYV---H--LV------------------SAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKI 428 (579)
T ss_pred HHHHHHHHhCccch---h--cc------------------ccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 55555443321100 0 00 00000000000 1111222333444455444 3444456
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-HhHHHHHHHH
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-ANIWGALLGA 335 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~ 335 (423)
|+..+..|.-.|.-.|++++|...|+.++... |-|..+||.|.-.++...+.++|+..|.+. .+.|. +.+.-.|.-.
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 77788888778888899999999999888753 456778999998888888999999998887 67775 3466667778
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC----------CcchHHHHHHHHHhcCChhHHHHHH
Q 038550 336 CRIYGNVELGAWAAEHLFMLKPQ----------HCGYYILLSNMYAEAGKWDEASKVR 383 (423)
Q Consensus 336 ~~~~~~~~~a~~~~~~~~~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~~ 383 (423)
|...|.+++|...|-.++.+.+. +..+|..|-.++.-.++.|-+.++.
T Consensus 508 ~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 88999999999888888776533 1246777666677777776555443
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.74 E-value=2.3e-06 Score=68.97 Aligned_cols=155 Identities=7% Similarity=0.028 Sum_probs=118.4
Q ss_pred HHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 038550 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 279 (423)
+..|...|+++.+....+.+..+. ..+...++.+++...++...+.. +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888877655543332221 11223667788888888877764 347889999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHH-HhcCC--hHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 280 KYFDEMQADSVKPTEMHYACMVDLL-GRAGL--MEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
..|++..+.. +.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..|+++.+
T Consensus 94 ~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 94 LAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999874 45677788887764 67777 59999999988 5566 677888888899999999999999999999
Q ss_pred cCCCCcchHH
Q 038550 355 LKPQHCGYYI 364 (423)
Q Consensus 355 ~~p~~~~~~~ 364 (423)
..|++..-+.
T Consensus 173 l~~~~~~r~~ 182 (198)
T PRK10370 173 LNSPRVNRTQ 182 (198)
T ss_pred hCCCCccHHH
Confidence 9987665443
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.73 E-value=2e-08 Score=54.67 Aligned_cols=32 Identities=22% Similarity=0.513 Sum_probs=20.5
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.72 E-value=2.2e-06 Score=81.89 Aligned_cols=140 Identities=9% Similarity=0.000 Sum_probs=84.8
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD-PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 301 (423)
++..+..|.....+.|.+++|..+++...+. .|+ ......+..++.+.+++++|...+++..... +-+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 4556666666666666677777766666664 343 3455555666666666777666666666643 33445555556
Q ss_pred HHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHH
Q 038550 302 DLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 365 (423)
.++.+.|++++|..+|+++ ...| +..++..+...+...|+.++|...|+++.+...+....|+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 6666666777777666666 2233 35566666666666667777776666666655444444433
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=3e-06 Score=77.71 Aligned_cols=191 Identities=18% Similarity=0.163 Sum_probs=119.6
Q ss_pred CcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038550 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269 (423)
Q Consensus 190 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 269 (423)
+|-...-..+...+.+.|-...|..+|+++ ..|...|.+|+..|+..+|..+..+-.++ +|++..|..+....
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 444445556777788888888888888754 46777788888888888888888777763 56777777777666
Q ss_pred hccCcHHHHHHHHHHHHH----------------------------cCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-
Q 038550 270 SHGGLVEKGKKYFDEMQA----------------------------DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL- 320 (423)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~----------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~- 320 (423)
-..--+++|+++.+.... .. +.-..+|-.+..+..+.++++.|.+.|...
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 555555566555554332 21 112233434444444555666666655544
Q ss_pred CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 321 PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 321 ~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
...|| ...||.+-.+|.+.|+-.+|...+.++.+-+-.+..+|........+.|.+++|.+.+.++.+
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 34553 345666666666666666666666666666655566666655556666666666666666654
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=3.3e-06 Score=77.41 Aligned_cols=242 Identities=13% Similarity=0.050 Sum_probs=154.9
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCH
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 209 (423)
...+.+.|-...|+.++++.. .+..++.+|+..|+..+|..+..+..+ -+|+...|..+.+.....--+
T Consensus 405 aell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHH
Confidence 444444455555555554432 334445555555555555555554444 345555555555555555555
Q ss_pred HHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038550 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS 289 (423)
Q Consensus 210 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 289 (423)
++|.++++..... +-..+.....+.+++.++.+.|+.-.+.. +....+|-.+..+..+.+++..|.+.|.......
T Consensus 474 EkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 474 EKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 5565555543322 11111222234677888888887765542 2255678888888889999999999999988753
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CC-CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCcchHHH
Q 038550 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PV-EPDANIWGALLGACRIYGNVELGAWAAEHLFMLK--PQHCGYYIL 365 (423)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~ 365 (423)
+-+...||.+-.+|.+.++-.+|...+++. +. .-+..+|...+....+.|.+++|++.+.++..+. ..++.+...
T Consensus 550 -Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~ 628 (777)
T KOG1128|consen 550 -PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLI 628 (777)
T ss_pred -CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHH
Confidence 445788999999999999999999999988 32 3355678888888899999999999999998754 335566665
Q ss_pred HHHHHHhcCC---hhHHHHHHHHHH
Q 038550 366 LSNMYAEAGK---WDEASKVRELMK 387 (423)
Q Consensus 366 l~~~~~~~g~---~~~A~~~~~~m~ 387 (423)
++....+.-. .+++.......+
T Consensus 629 iv~~~~~~~~d~s~de~~~~k~~~k 653 (777)
T KOG1128|consen 629 IVRTVLEGMTDESGDEATGLKGKLK 653 (777)
T ss_pred HHHHHHhhccccccchhhhhhHHHH
Confidence 5555443322 455555544443
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.70 E-value=2.3e-08 Score=54.47 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=27.6
Q ss_pred cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 253 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
.|+.||..||+.+|.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888773
No 117
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.64 E-value=3e-06 Score=80.26 Aligned_cols=161 Identities=12% Similarity=0.006 Sum_probs=116.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCC-CCchHHHHHHHH
Q 038550 23 IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL-NFDLFLTNALTD 101 (423)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 101 (423)
...|..|...|...-+...|.+.|+...+.+ .-+......+...+++..+++.|..+.-..-+... ..-...|..+.-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4478888888888888889999999887754 23566788888999999999999988333222210 111223333455
Q ss_pred HHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhh-HHHHHHHHHhHhhHHh
Q 038550 102 MYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS-FMGAISACANLAAIKQ 176 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~ 176 (423)
.|.+.++...|...| +..+.|...|..+..+|...|.+..|+++|.+... +.|+... -.......+..|.+.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhHHHHHHHHHHHHHhhhHHH
Confidence 577888888888888 56677889999999999999999999999998876 4565432 2223334467788999
Q ss_pred hhHHHHHHHH
Q 038550 177 GKEIHGVTIR 186 (423)
Q Consensus 177 a~~~~~~~~~ 186 (423)
+...+..+..
T Consensus 649 ald~l~~ii~ 658 (1238)
T KOG1127|consen 649 ALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHH
Confidence 8888877665
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=3.4e-05 Score=62.46 Aligned_cols=226 Identities=13% Similarity=0.057 Sum_probs=112.1
Q ss_pred chHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhh-hHHHHHHHHhccCcchHHHHHHHHH
Q 038550 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-KEIHGVTIRKHLHTHLFVANSILDF 202 (423)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (423)
..-.-+-++|...|++...+. +.+... .|....+..+.......++.+.- .++.+.+.......+......-...
T Consensus 42 e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i 117 (299)
T KOG3081|consen 42 ELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAII 117 (299)
T ss_pred HHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHH
Confidence 333344555655555443322 222211 33333333333333333333322 2334444443333333333333455
Q ss_pred HHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHH
Q 038550 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH----GGLVEKG 278 (423)
Q Consensus 203 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a 278 (423)
|+..|++++|++...... +......=+..+.+..+++-|...+++|.+- -+..|.+.|..++.+ .+.+..|
T Consensus 118 ~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred hhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhH
Confidence 667777777777766633 2222222234445566666777777776653 244555555555433 3456666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCCh-hHHHHHHHHHHhc
Q 038550 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNV-ELGAWAAEHLFML 355 (423)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 355 (423)
.-+|++|.++ .+|+..+.+....++...|++++|..+++.. +...++.+...++-.....|.. +-..+.+.+....
T Consensus 193 fyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 193 FYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 6666666654 4566666666666666666677776666665 2233455555555444444433 3334455555555
Q ss_pred CCCC
Q 038550 356 KPQH 359 (423)
Q Consensus 356 ~p~~ 359 (423)
.|.+
T Consensus 272 ~p~h 275 (299)
T KOG3081|consen 272 HPEH 275 (299)
T ss_pred CCcc
Confidence 5554
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.62 E-value=1.8e-05 Score=77.87 Aligned_cols=231 Identities=10% Similarity=0.050 Sum_probs=141.2
Q ss_pred hhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC--c---hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc
Q 038550 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH--D---VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192 (423)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 192 (423)
..+.+...|-..|..+...++.++|.++.++.+.. +.+ . ...|.++++.-..-|.-+...++|+++.+.. ..
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~ 1529 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DA 1529 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--ch
Confidence 33445556666666666666666666666666543 111 1 1234444444444455556666666666542 22
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 038550 193 LFVANSILDFYTRSGRIDLANKIFDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD---PVSYIAIL 266 (423)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll 266 (423)
..+|..|...|.+.+.+++|.++++.|.+ .....|...+..+.+.++-+.|..++.+..+. -|. .......+
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHH
Confidence 34556677777777777777777777653 34566777777777777777777777776654 222 22334444
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC---CCCC--CHhHHHHHHHHHHhcCC
Q 038550 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEP--DANIWGALLGACRIYGN 341 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~--~~~~~~~l~~~~~~~~~ 341 (423)
..-.+.|+.+++..+|+...... |--...|+..++.=.+.|+.+.+..+|++. ++.| --..|...+..--..|+
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 55566777778777887777652 445567777777777778888888887776 3333 23456666666566676
Q ss_pred hhHHHHHHHHHHh
Q 038550 342 VELGAWAAEHLFM 354 (423)
Q Consensus 342 ~~~a~~~~~~~~~ 354 (423)
-+.++.+=.++.+
T Consensus 1687 e~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1687 EKNVEYVKARAKE 1699 (1710)
T ss_pred hhhHHHHHHHHHH
Confidence 6655555444433
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.60 E-value=9.7e-06 Score=78.46 Aligned_cols=227 Identities=11% Similarity=0.106 Sum_probs=120.8
Q ss_pred CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh-hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHH
Q 038550 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV-SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200 (423)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 200 (423)
+...+..|+..+...+++++|.++.+...+. .|+.. .|..+...+.+.++...+..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 4445666666666666666666666655543 34332 222222233444443333332 1 11
Q ss_pred HHHHhcCCHHHHHHHhccCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 038550 201 DFYTRSGRIDLANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278 (423)
Q Consensus 201 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 278 (423)
..+....++..+..+...|. ..+..++..+..+|-+.|+.+++..+|+++.+.. +-|+.+.|.+...|... ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 11222222222222222221 1123355556666666666667777776666654 22556666666666666 66666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHH---HHHH--hcCChHHHHHHHhhC----CCCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 038550 279 KKYFDEMQADSVKPTEMHYACMV---DLLG--RAGLMEDAVKLIKNL----PVEPDANIWGALLGACRIYGNVELGAWAA 349 (423)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~---~~~~--~~~~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 349 (423)
.+++.+....-+ +..-|+.+. .-++ ...+.+.-.++.+++ +..--+.++..+-..|...++++++..++
T Consensus 169 ~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 169 ITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 666666655411 000111111 1111 122333333333333 23334556666778888999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHH
Q 038550 350 EHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 350 ~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
+.+.+.+|.|..+..-++.+|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 9999999999988888888776
No 121
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=0.0001 Score=70.45 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=145.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 038550 92 DLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170 (423)
Q Consensus 92 ~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 170 (423)
.+.+|..+..+-.+.|.+.+|++.| +. .|+..|...+....+.|.|++-.+.+...++..-.|... +.++-+|++
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAK 1178 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHH
Confidence 4678899999999999999999998 33 356689999999999999999999998888776666554 468889999
Q ss_pred HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038550 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250 (423)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 250 (423)
.+++.+.+..+. -|+......+.+-|...+.++.|.-+|. ++.-|..|...+...|++..|...-++.
T Consensus 1179 t~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999888776652 3666666778888888888988888887 4556777777888888888777655443
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 251 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
- +..||-.+-.+|...+.+..| +|...++-....-...|+..|-..|-+++.+.+++..
T Consensus 1247 n------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1247 N------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred c------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 2 456777777777766555433 2222222233344555666666777777766666544
No 122
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.59 E-value=0.00066 Score=64.36 Aligned_cols=383 Identities=13% Similarity=0.081 Sum_probs=212.4
Q ss_pred ccCCcchhHHhhcccCC--cChhhHHHHHHH--HHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHH
Q 038550 4 KSSRPAEASYLFHNIAE--KNIVSWNAMVAN--FAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 79 (423)
..+++..|.+..+.+.+ ||.. |...+.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...+..+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 35677778777777655 4433 3444444 56789999999999887665443 77788888889999999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCChHH----HHHHhchhcCCcchHHHHHHHHhcC-CC---------hhhHHHH
Q 038550 80 IHARIIRKGLNFDLFLTNALTDMYAKCGCLNL----AQNVFNISFRDEVSYNILIVGYSQT-SD---------CSESLSL 145 (423)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~l~~~~~~~-~~---------~~~a~~~ 145 (423)
+|++.... .|+......+..+|.+.+.+.+ |.+++...+.+...+=.+++...+. .. ..-|.+.
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 99999866 5667777778888888877654 5566655555555443344443332 11 2234555
Q ss_pred HHHHHhcC-CCCchhhHHHHHHHHHhHhhHHhhhHHHH-HHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCC
Q 038550 146 FSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHG-VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223 (423)
Q Consensus 146 ~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 223 (423)
++.+.+.+ -.-+..-...-+..+...|++++|..++. ...+.-..-+...-+..+..+...++|++..++-.++...+
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 66665544 11122222333444556778888888883 33333344444454566777777777777666555444221
Q ss_pred hhhHHHHHHHHh----------------ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---hccCcHHHHHHH---
Q 038550 224 SASWNTLILGYG----------------MLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC---SHGGLVEKGKKY--- 281 (423)
Q Consensus 224 ~~~~~~li~~~~----------------~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~~~~a~~~--- 281 (423)
..-|...++.+. ..+..+...+..++......+ ..|-+-+.+. -.-|+.+++...
T Consensus 257 ~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R---gp~LA~lel~kr~~~~gd~ee~~~~y~~ 333 (932)
T KOG2053|consen 257 NDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR---GPYLARLELDKRYKLIGDSEEMLSYYFK 333 (932)
T ss_pred CcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc---CcHHHHHHHHHHhcccCChHHHHHHHHH
Confidence 111222222111 112222222222222221111 0111111111 122333332221
Q ss_pred ---------------------------HHHHHHcCCCCChh-------hHHHHHHHHHhcCC-----hHHHHHHHhhC--
Q 038550 282 ---------------------------FDEMQADSVKPTEM-------HYACMVDLLGRAGL-----MEDAVKLIKNL-- 320 (423)
Q Consensus 282 ---------------------------~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~-----~~~a~~~~~~~-- 320 (423)
+...... .++.. -+...+....-.|. .+.-..++++.
T Consensus 334 kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~ 411 (932)
T KOG2053|consen 334 KFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKL 411 (932)
T ss_pred HhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 1111111 11111 01111111112221 11222222221
Q ss_pred ----C------CCCC---------HhHHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 038550 321 ----P------VEPD---------ANIWGALLGACRIYGNV---ELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDE 378 (423)
Q Consensus 321 ----~------~~~~---------~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 378 (423)
| .-|. .-+.+.|+..+.+.++. -+|+-+++......|.|..+-..+++.|+-.|-+..
T Consensus 412 ~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~ 491 (932)
T KOG2053|consen 412 TYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPD 491 (932)
T ss_pred HHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChh
Confidence 1 1122 12346677888888775 478888899999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCC
Q 038550 379 ASKVRELMKSREAKKNP 395 (423)
Q Consensus 379 A~~~~~~m~~~~~~~~~ 395 (423)
|.++|+.+--+.|..+.
T Consensus 492 a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 492 AYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHhcchHHhhhcc
Confidence 99999998777765443
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=6.5e-06 Score=69.12 Aligned_cols=182 Identities=11% Similarity=0.002 Sum_probs=124.9
Q ss_pred CchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCc--chHHHHHHHHHHHhcCCHHHHHHHhccCCC--C-Chh---hH
Q 038550 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT--HLFVANSILDFYTRSGRIDLANKIFDCLPV--K-DSA---SW 227 (423)
Q Consensus 156 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~---~~ 227 (423)
.....+..+...+...|+++.|...++.+....+.. ....+..+..++.+.|++++|...++.+.+ | +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345677788888999999999999999998865432 124566788999999999999999998752 2 222 45
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHH
Q 038550 228 NTLILGYGML--------GEVDTAINLFEAMREDGVGYDP-VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298 (423)
Q Consensus 228 ~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 298 (423)
..+..++... |++++|.+.++.+... .|+. ..+..+... .. ... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HHH--------HHHH
Confidence 5555566554 7889999999999876 3433 222222111 00 000 000 0112
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CC---CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 299 CMVDLLGRAGLMEDAVKLIKNL-PV---EP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~-~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
.+...|.+.|++++|...+++. .. .| ....+..+..++...|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4556788889999999888877 22 23 346788888899999999999998888776555
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=1.7e-05 Score=64.10 Aligned_cols=242 Identities=11% Similarity=0.024 Sum_probs=152.3
Q ss_pred HHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHH
Q 038550 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211 (423)
Q Consensus 132 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 211 (423)
-+.-.|.+..++.......... -+...-..+-++|...|.......-. .... .|.......+......-++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI---~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEI---KEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccc---cccc-CChHHHHHHHHHHhhCcchhHH
Confidence 3444566666666555544321 23333334455555555544333221 1111 2333333333333333333332
Q ss_pred H-HHHhccCCCC----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 212 A-NKIFDCLPVK----DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 212 A-~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
- .++.+.+..+ +......-...|+..|++++|++..+... +......=...+.+..+.+-|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2233333322 22223333456889999999999988722 22233333445678889999999999998
Q ss_pred HcCCCCChhhHHHHHHHHHh----cCChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 287 ADSVKPTEMHYACMVDLLGR----AGLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
+- .+..+.+.|..++.+ .+.+.+|.-+|++| +..|+..+.+-...++...|++++|..+++.+...++.++
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 74 355667767766653 45799999999999 4778999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 038550 361 GYYILLSNMYAEAGKWDEA-SKVRELMKS 388 (423)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 388 (423)
.+...++-+-...|.-.++ .+.+.+++.
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 9998888777777776554 455555554
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.55 E-value=1.7e-06 Score=65.58 Aligned_cols=93 Identities=20% Similarity=0.253 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
...+...+...|++++|.+.|+.+ ...| +...+..+...+...|++++|...++++.+.+|.++..+..++.+|...|
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 334444455555555555555554 2222 34445555555555555555555555555555555555555555555555
Q ss_pred ChhHHHHHHHHHHhc
Q 038550 375 KWDEASKVRELMKSR 389 (423)
Q Consensus 375 ~~~~A~~~~~~m~~~ 389 (423)
++++|...+++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 100 EPESALKALDLAIEI 114 (135)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555443
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=1.8e-05 Score=69.61 Aligned_cols=126 Identities=19% Similarity=0.167 Sum_probs=96.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-HhHHHHHHHHHHh
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-ANIWGALLGACRI 338 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~ 338 (423)
-|..-+ .+...|.++.|+..++.+... .+-|...+......+.+.++.++|.+.++++ ...|+ ...+-.+..++.+
T Consensus 309 ~YG~A~-~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 309 QYGRAL-QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHH-HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 344444 345668888888888888775 3456666666778888888999998888887 56676 5566777788888
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 339 YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.|+..+|+..+......+|+++..|..|+.+|...|+..++.....++..
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 89998999988888888888888888888888888887777766655543
No 127
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.52 E-value=0.00067 Score=60.74 Aligned_cols=128 Identities=11% Similarity=0.059 Sum_probs=85.9
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHH
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (423)
-|+.+|+.||+-+... ..+++.+.++++... .+-....|..-+..-....+++.++.+|.+.+..-+ +...|...+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 3789999999987766 999999999999864 344567899999999999999999999999886633 455555555
Q ss_pred HHHHh-cCChHH-------HHHHh----chhcCCcchHHHHHHH---------HhcCCChhhHHHHHHHHHhc
Q 038550 101 DMYAK-CGCLNL-------AQNVF----NISFRDEVSYNILIVG---------YSQTSDCSESLSLFSEMRLL 152 (423)
Q Consensus 101 ~~~~~-~g~~~~-------a~~~~----~~~~~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~m~~~ 152 (423)
+--.+ .|+... |.++- .+...+...|+..+.. +....+++...++|+++...
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 43222 233322 22221 2223344456555443 33445667778888888753
No 128
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.51 E-value=2.9e-05 Score=73.93 Aligned_cols=364 Identities=13% Similarity=-0.000 Sum_probs=207.0
Q ss_pred CcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCC-CCCCchhHHHHHHHhhcCCCCccHHHHHH
Q 038550 7 RPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHN-EFPNSVTLTNVLPACARGHFLRPGKEIHA 82 (423)
Q Consensus 7 ~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 82 (423)
+...|.+.|+..-+ .+..++..+.+.|++..+++.|..+.-..-+.. ...-...|..+.-.+.+.++...+..-|+
T Consensus 507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQ 586 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQ 586 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHH
Confidence 44567777776554 578889999999999999999999843332221 01112234444445778899999999999
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh---chhcCCc-chHHHHHHHHhcCCChhhHHHHHHHHHhcC-----
Q 038550 83 RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---NISFRDE-VSYNILIVGYSQTSDCSESLSLFSEMRLLG----- 153 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~---~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----- 153 (423)
...+.. +.|...|..++.+|.++|++..|.++| ....|+. ..-......-+..|.+.++++.+.......
T Consensus 587 sALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~ 665 (1238)
T KOG1127|consen 587 SALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT 665 (1238)
T ss_pred HHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 998876 668889999999999999999999999 2233322 222222344566899999999888775431
Q ss_pred -CCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHH-------hccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC--CCC
Q 038550 154 -MKHDVVSFMGAISACANLAAIKQGKEIHGVTIR-------KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP--VKD 223 (423)
Q Consensus 154 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~ 223 (423)
..--..++..+...+.-.|-...+..+++.-.+ .....+...|-.+ ..|..+|-... .|+
T Consensus 666 ~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e~~~vn 735 (1238)
T KOG1127|consen 666 GQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEEPSIVN 735 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhcccchH
Confidence 111122333333334444444444444443322 2212222222111 12233333333 112
Q ss_pred hhhHHHHHHHHhccCCH---H---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--------cCcHHHHHHHHHHHHHcC
Q 038550 224 SASWNTLILGYGMLGEV---D---TAINLFEAMREDGVGYDPVSYIAILTACSH--------GGLVEKGKKYFDEMQADS 289 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~---~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~ 289 (423)
.....++..-.-..+.. + -+.+.+-.-.. ...+..+|..++..|.+ ..+...|...+.+.++..
T Consensus 736 ~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ 813 (1238)
T KOG1127|consen 736 MHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC 813 (1238)
T ss_pred HHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh
Confidence 21112221111112211 1 01111111011 11122333333333222 122345666676666642
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
..+..+|+.|.-. ...|.+.-|...|-+- -..| ...+|..+.-.+....|++-|...+.+...+.|.+...|...+
T Consensus 814 -ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~A 891 (1238)
T KOG1127|consen 814 -ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEA 891 (1238)
T ss_pred -hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHH
Confidence 3455566655443 5556777777666544 2233 5667777777788888888888888888888888888887777
Q ss_pred HHHHhcCChhHHHHHHHH
Q 038550 368 NMYAEAGKWDEASKVREL 385 (423)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~ 385 (423)
......|+.-++..++..
T Consensus 892 li~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HhHHHHHHHHHHHHHHHh
Confidence 667777777777766655
No 129
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=0.00026 Score=61.57 Aligned_cols=113 Identities=7% Similarity=-0.056 Sum_probs=52.9
Q ss_pred hcCChHHHHHHh----chhcCCcchHHHHHHHHhcCC-ChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhH--Hhh
Q 038550 105 KCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTS-DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI--KQG 177 (423)
Q Consensus 105 ~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~--~~a 177 (423)
..++.++|+.+. .+.+.+..+|+....++...| ++++++..++++.+.. +-+..+|+.....+.+.|+. +.+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 344555555555 233344445555555555555 4677777777777654 33334454443333333331 344
Q ss_pred hHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccC
Q 038550 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219 (423)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 219 (423)
..+++.+.+... -+..+|+...-++...|+++++++.++++
T Consensus 128 l~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~ 168 (320)
T PLN02789 128 LEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQL 168 (320)
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445544444332 22333333333333334444444444433
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=4.1e-05 Score=73.36 Aligned_cols=143 Identities=12% Similarity=0.101 Sum_probs=116.4
Q ss_pred cCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038550 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265 (423)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 265 (423)
...+...+..|..+..+.|++++|..+++... +.+......+...+.+.+++++|+..+++....... +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 44557778888999999999999999999876 335677888889999999999999999999987432 56677788
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC--CCCCCHhHHHHHH
Q 038550 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDANIWGALL 333 (423)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~ 333 (423)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++. ...|....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 888999999999999999999843 445788888999999999999999999987 3345555555544
No 131
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.47 E-value=7.5e-06 Score=66.10 Aligned_cols=162 Identities=10% Similarity=-0.038 Sum_probs=129.1
Q ss_pred CchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHH
Q 038550 57 NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVG 132 (423)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~ 132 (423)
|... ...-..+...|+-+....+....... .+.|......++....+.|++..|...| ...++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 3344 56666777888888888887776533 2556677777899999999999999999 5567789999999999
Q ss_pred HhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHH
Q 038550 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212 (423)
Q Consensus 133 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 212 (423)
|.+.|+++.|..-|.+..+.. +-+...++.+...+.-.|+.+.|..++......+.. +..+-..+..+....|+++.|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHH
Confidence 999999999999999998853 345667888999999999999999999988876543 444556688888999999999
Q ss_pred HHHhccCCCC
Q 038550 213 NKIFDCLPVK 222 (423)
Q Consensus 213 ~~~~~~~~~~ 222 (423)
..+...-..+
T Consensus 222 ~~i~~~e~~~ 231 (257)
T COG5010 222 EDIAVQELLS 231 (257)
T ss_pred Hhhccccccc
Confidence 9998765543
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=0.00015 Score=70.62 Aligned_cols=167 Identities=8% Similarity=0.051 Sum_probs=110.6
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCch-hHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHH
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV-TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 99 (423)
.+..+|..|+..+...+++++|.++.+...+. .|+.. .|-.+...+.+.++...+..+ .+... .+...-++.+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~v 102 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIV 102 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHH
Confidence 46778889999998999999999999866654 34443 444444466667776666555 33222 2222222222
Q ss_pred HHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhH
Q 038550 100 TDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179 (423)
Q Consensus 100 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 179 (423)
-..|...+++ ..+..++..+..+|-+.|+.++|.++|+++++.. +-|....+.+...+... ++++|.+
T Consensus 103 e~~~~~i~~~----------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 103 EHICDKILLY----------GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred HHHHHHHHhh----------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHH
Confidence 2222222221 2233467788899999999999999999999876 56777888888888888 9999998
Q ss_pred HHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC
Q 038550 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220 (423)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 220 (423)
++.+++.. |...+++..+.++|.++.
T Consensus 171 m~~KAV~~---------------~i~~kq~~~~~e~W~k~~ 196 (906)
T PRK14720 171 YLKKAIYR---------------FIKKKQYVGIEEIWSKLV 196 (906)
T ss_pred HHHHHHHH---------------HHhhhcchHHHHHHHHHH
Confidence 88776654 444556666666666554
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.43 E-value=7.5e-06 Score=72.45 Aligned_cols=123 Identities=13% Similarity=0.136 Sum_probs=100.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHh
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRI 338 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~ 338 (423)
....|+..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+. ...| +...+......+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 34455666667788888888888888764 44 3445777777788888888888776 3334 66677777788999
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 339 YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
.++++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999886
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.0001 Score=59.34 Aligned_cols=166 Identities=20% Similarity=0.196 Sum_probs=110.6
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCCChhhHHH---HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 038550 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNT---LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273 (423)
Q Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 273 (423)
..+.-+....|+.+.|...++.+...-+.++.. -.--+-..|++++|+++++.+.+.+ +.|..++-.-+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 344445555666666666666544211111111 1112345678888888888888775 335666666666666677
Q ss_pred cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcC---ChhHHHHH
Q 038550 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYG---NVELGAWA 348 (423)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~---~~~~a~~~ 348 (423)
+.-+|++-+.+..+. +..|...|..+...|...|++++|.-.++++ -+.| ++..+..+...+.-.| +.+.|.+.
T Consensus 135 K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 777888777777765 6778888888989999999999998888887 3455 6666677766654433 56788889
Q ss_pred HHHHHhcCCCCcchHH
Q 038550 349 AEHLFMLKPQHCGYYI 364 (423)
Q Consensus 349 ~~~~~~~~p~~~~~~~ 364 (423)
|.++.++.|.+...+.
T Consensus 214 y~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 214 YERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHhChHhHHHHH
Confidence 9999998886544433
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.40 E-value=1.4e-05 Score=60.44 Aligned_cols=115 Identities=11% Similarity=0.031 Sum_probs=86.2
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCC
Q 038550 246 LFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVE 323 (423)
Q Consensus 246 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~ 323 (423)
.+++.... .| +......+...+...|++++|...++.+...+ +.+...+..+...+...|++++|...+++. ...
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444443 33 33455666677888888899988888887764 456777888888888888999998888877 444
Q ss_pred C-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchH
Q 038550 324 P-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY 363 (423)
Q Consensus 324 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 363 (423)
| +...+..+...+...|++++|...++++.+..|++....
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 4 566777778888899999999999999999988876543
No 136
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.40 E-value=6.5e-06 Score=61.85 Aligned_cols=93 Identities=13% Similarity=-0.000 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038550 298 ACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGK 375 (423)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 375 (423)
-.+...+...|++++|..+|+-+ .+.| +..-|-.|.-++...|++++|+..|..+..++|+++..+..++.++...|+
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 34455667899999999999987 5566 666788888889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcc
Q 038550 376 WDEASKVRELMKSRE 390 (423)
Q Consensus 376 ~~~A~~~~~~m~~~~ 390 (423)
.+.|++.|+.....-
T Consensus 119 ~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 119 VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.36 E-value=2.1e-05 Score=69.64 Aligned_cols=129 Identities=15% Similarity=0.116 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 038550 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273 (423)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 273 (423)
.....|+..+...++++.|..+|+++.+.++.....+++.+...++-.+|.+++++..+.. +-+...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3345667777778899999999999988777777788888888899999999999988653 236666666677789999
Q ss_pred cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 038550 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324 (423)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 324 (423)
+++.|..+.+++.... +-+..+|..|..+|...|+++.|+..++.++..+
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999999863 4456699999999999999999999999885443
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=9.1e-05 Score=59.59 Aligned_cols=162 Identities=16% Similarity=0.184 Sum_probs=125.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (423)
|..++-+....|+.+.|...++.+...- +-+...-..-..-+...|.+++|.++++.+.+.+ +.|..++-.=+-..-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 4445556667899999999999988763 2233332222233556789999999999999886 5667777766666677
Q ss_pred cCChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---ChhHHHH
Q 038550 307 AGLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG---KWDEASK 381 (423)
Q Consensus 307 ~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~ 381 (423)
.|+.-+|++-+.+. .+..|...|.-+...|...|+++.|...++++.=..|-++..+..+++.+.-.| +.+-|.+
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 78877888776665 456699999999999999999999999999999999999999999998876665 4556778
Q ss_pred HHHHHHhcc
Q 038550 382 VRELMKSRE 390 (423)
Q Consensus 382 ~~~~m~~~~ 390 (423)
+|.+..+..
T Consensus 213 yy~~alkl~ 221 (289)
T KOG3060|consen 213 YYERALKLN 221 (289)
T ss_pred HHHHHHHhC
Confidence 888776643
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.00017 Score=63.70 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=107.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT-EMHYACMVDLLGRAG 308 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 308 (423)
...+...|++++|+..++.+... .| |+.........+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence 33455789999999999998876 44 4555566677899999999999999999986 455 556667789999999
Q ss_pred ChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 309 LMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 309 ~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
++.+|+.++++. ...-|+..|..|.++|...|+..++..... +.|...|++++|+..+...
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHH
Confidence 999999999887 334488899999999999999988766544 4566667777777766666
Q ss_pred Hhc
Q 038550 387 KSR 389 (423)
Q Consensus 387 ~~~ 389 (423)
.+.
T Consensus 452 ~~~ 454 (484)
T COG4783 452 SQQ 454 (484)
T ss_pred HHh
Confidence 554
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.31 E-value=9.7e-07 Score=48.84 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCc
Q 038550 24 VSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58 (423)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 58 (423)
.+||.+|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888873
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.30 E-value=3e-05 Score=59.40 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=39.0
Q ss_pred HHHHhcCChHHHHHHHhhC-CCCCCH----hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 302 DLLGRAGLMEDAVKLIKNL-PVEPDA----NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
..+...|++++|...|+.+ ...|+. .....|...+...|++++|+..++.. ...+..+..+...+.+|.+.|++
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCH
Confidence 4444455555555555544 111222 12223344455555555555555442 12223334455555566666666
Q ss_pred hHHHHHHHH
Q 038550 377 DEASKVREL 385 (423)
Q Consensus 377 ~~A~~~~~~ 385 (423)
++|+..|++
T Consensus 135 ~~A~~~y~~ 143 (145)
T PF09976_consen 135 DEARAAYQK 143 (145)
T ss_pred HHHHHHHHH
Confidence 666665554
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.28 E-value=8.5e-05 Score=56.87 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=89.2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC--hhhHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYD---PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT--EMHYACM 300 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 300 (423)
.|..++..+ ..++...+...++.+...... + ....-.+...+...|++++|...|+.+......|+ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 455555555 478888888888888876322 2 23344455678888999999999999888752232 2234456
Q ss_pred HHHHHhcCChHHHHHHHhhCCC-CCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 301 VDLLGRAGLMEDAVKLIKNLPV-EPDANIWGALLGACRIYGNVELGAWAAEHL 352 (423)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 352 (423)
...+...|++++|+..++.... ...+..+......+...|++++|...|+.+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788889999999999987632 234556667778899999999999998875
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=1.6e-06 Score=47.95 Aligned_cols=35 Identities=43% Similarity=0.649 Sum_probs=30.6
Q ss_pred chHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCch
Q 038550 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158 (423)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 158 (423)
.+||.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36899999999999999999999999999988873
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.25 E-value=1.5e-06 Score=47.73 Aligned_cols=33 Identities=30% Similarity=0.283 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHhhchhCCCCC
Q 038550 24 VSWNAMVANFAQNRLELKALQLVREMPIHNEFP 56 (423)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 56 (423)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 567888888888888888888888887777766
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.22 E-value=2.6e-06 Score=46.68 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=28.1
Q ss_pred chHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC
Q 038550 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH 156 (423)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 156 (423)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.22 E-value=3.5e-05 Score=56.81 Aligned_cols=97 Identities=11% Similarity=0.009 Sum_probs=41.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC----HhHHHHHHHHH
Q 038550 264 AILTACSHGGLVEKGKKYFDEMQADSV--KPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD----ANIWGALLGAC 336 (423)
Q Consensus 264 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~ 336 (423)
.+...+.+.|++++|...+..+..... +.....+..+..++.+.|+++.|...|+.+ ...|+ ...+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444444555555555555444310 001122333444444444444444444443 11121 22334444444
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCc
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
...|+.++|...++++.+..|+++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCCh
Confidence 445555555555555555554443
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.19 E-value=6.5e-06 Score=53.90 Aligned_cols=65 Identities=23% Similarity=0.205 Sum_probs=60.2
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-ChhHHHHHHHHHHhc
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG-KWDEASKVRELMKSR 389 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 389 (423)
++.+|..+...+...|++++|+..|+++++.+|.++.++..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788889999999999999999999999999999999999999999999 799999999988764
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.18 E-value=2.6e-06 Score=58.32 Aligned_cols=77 Identities=25% Similarity=0.295 Sum_probs=42.5
Q ss_pred CChHHHHHHHhhC-CCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 038550 308 GLMEDAVKLIKNL-PVEP---DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVR 383 (423)
Q Consensus 308 ~~~~~a~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 383 (423)
|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555555 1122 333444455666666666666666666 4445555555555566666777777776666
Q ss_pred HH
Q 038550 384 EL 385 (423)
Q Consensus 384 ~~ 385 (423)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.17 E-value=3.6e-05 Score=56.70 Aligned_cols=97 Identities=20% Similarity=0.086 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---cchHHHH
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH---CGYYILL 366 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 366 (423)
.++..+...+.+.|++++|.+.|+++ ...|+ ...+..+..++...|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34566778889999999999999988 33343 3466678899999999999999999999988775 4568888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccc
Q 038550 367 SNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 367 ~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
+.++.+.|++++|...++++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 9999999999999999999988753
No 150
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=5.3e-05 Score=65.17 Aligned_cols=273 Identities=12% Similarity=0.025 Sum_probs=146.4
Q ss_pred HHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC-chhhHHHHHHHHHhHhhHHh
Q 038550 102 MYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-DVVSFMGAISACANLAAIKQ 176 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~ 176 (423)
.+.+..++.+|+..+ ++.+.+...|..-+..+...++++++.--.++-... .| .+....-.-.++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHHH
Confidence 344555555665555 445556666666667777777777776655544432 22 22244444444555555555
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----CChhhHHHH-HHHHhccCCHHHHHHHHHHH
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-----KDSASWNTL-ILGYGMLGEVDTAINLFEAM 250 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m 250 (423)
|.+.++.- ..+ ....|+..++.+.. |.-.+|..+ ..++...|++++|..+-...
T Consensus 136 A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 55544410 000 01111112222211 112223222 23455566777776666555
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHH-------------HHHHHhcCChHHHHHHH
Q 038550 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM-------------VDLLGRAGLMEDAVKLI 317 (423)
Q Consensus 251 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~~a~~~~ 317 (423)
++.... +....-.-..++...++.+.+...|++.+..+ |+...-... ..-..+.|.+.+|.+.|
T Consensus 196 lkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 196 LKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred Hhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 543211 22221111223444566677777776666542 332211111 12235667788888877
Q ss_pred hhC-CCCC-----CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 318 KNL-PVEP-----DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 318 ~~~-~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
.+. ++.| +...|.....+..+.|+..+|+.--+++.+++|.-...+..-+.++...+.|++|.+-+++..+...
T Consensus 273 teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 273 TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 766 4444 4445555556667778888888888888888877777777777777788888888888877766554
Q ss_pred cCCCCCcc
Q 038550 392 KKNPGCSW 399 (423)
Q Consensus 392 ~~~~~~~~ 399 (423)
.+....+|
T Consensus 353 s~e~r~~l 360 (486)
T KOG0550|consen 353 DCEIRRTL 360 (486)
T ss_pred ccchHHHH
Confidence 44443333
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.16 E-value=2.9e-05 Score=54.32 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
+..+...+...|++++|...+++. ...| +...+..+...+...+++++|...++......|.+...+..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566667777888888777766 3344 33566667777778888888888888888888888778888888888888
Q ss_pred ChhHHHHHHHHHHhc
Q 038550 375 KWDEASKVRELMKSR 389 (423)
Q Consensus 375 ~~~~A~~~~~~m~~~ 389 (423)
++++|...+.+..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888888776553
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.13 E-value=8.6e-06 Score=52.55 Aligned_cols=59 Identities=22% Similarity=0.226 Sum_probs=51.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+...+...|++++|+..|+++.+..|.++.++..++.++...|++++|+.+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678899999999999999999999999999999999999999999999999987654
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.11 E-value=6.3e-05 Score=52.46 Aligned_cols=80 Identities=11% Similarity=0.161 Sum_probs=67.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHcCCCCChhhH
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGV-GYDPVSYIAILTACSHGG--------LVEKGKKYFDEMQADSVKPTEMHY 297 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 297 (423)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 899999999999876642 455678899999999999999999
Q ss_pred HHHHHHHHh
Q 038550 298 ACMVDLLGR 306 (423)
Q Consensus 298 ~~l~~~~~~ 306 (423)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988764
No 154
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=9.6e-05 Score=61.44 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=90.4
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCCcchHHH
Q 038550 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIY---GNVELGAWAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 365 (423)
+-|...|-.|...|...|+.+.|..-|.+. .+.| ++..+..+..++..+ ....++..+++++...+|.++.....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 667889999999999999999999999887 4444 566777777665433 34678999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 366 LSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
|+..+...|++.+|...++.|.+....-++..+.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99999999999999999999998876555554444
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.03 E-value=0.00012 Score=65.17 Aligned_cols=102 Identities=14% Similarity=0.052 Sum_probs=72.6
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhH
Q 038550 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVEL 344 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~ 344 (423)
..+...|+++.|...|+++++.. +.+...|..+..+|...|++++|+..++++ .+.| +...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34556677777777777777653 345566666777777777888777777776 4455 45567777777888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHH
Q 038550 345 GAWAAEHLFMLKPQHCGYYILLSNM 369 (423)
Q Consensus 345 a~~~~~~~~~~~p~~~~~~~~l~~~ 369 (423)
|+..|+++.+++|.++.+...+..+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8888888888888877776665544
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=6.4e-05 Score=66.85 Aligned_cols=90 Identities=17% Similarity=0.111 Sum_probs=80.7
Q ss_pred HHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 038550 301 VDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDE 378 (423)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 378 (423)
...+...|++++|++.|+++ ...| +...|..+..+|...|++++|+..++++++++|.++..|..++.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 45567889999999999988 5555 667888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 038550 379 ASKVRELMKSRE 390 (423)
Q Consensus 379 A~~~~~~m~~~~ 390 (423)
|+..|++..+.+
T Consensus 89 A~~~~~~al~l~ 100 (356)
T PLN03088 89 AKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHhC
Confidence 999999987654
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.00 E-value=0.00036 Score=59.87 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=100.7
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA-CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (423)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467778888888888999999999998643 2234444444444 33357777899999999887 56778888889999
Q ss_pred HHhcCChHHHHHHHhhC-CCCCCH----hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 304 LGRAGLMEDAVKLIKNL-PVEPDA----NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
+...++.+.|..+|++. ..-|.. ..|...+..-.+.|+.+....+.+++.+.-|.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999987 323333 4899999999999999999999999999887744
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=1.7e-05 Score=65.42 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=89.1
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-HhHHHHHHHHHHhcCChhH
Q 038550 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-ANIWGALLGACRIYGNVEL 344 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ 344 (423)
.-+.+.+++.+|+..|.++++.. +-|.+.|..-..+|.+.|.++.|++-.+.. .+.|. ...|..|..+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34778899999999999999863 456777777889999999999999877766 67774 5689999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 345 GAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 345 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
|++.|+++++++|++......|-.+-.+.+..
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 99999999999999986666665544444433
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.98 E-value=0.0079 Score=55.87 Aligned_cols=195 Identities=8% Similarity=-0.064 Sum_probs=105.5
Q ss_pred cchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhC-CCCCCchhHHH----H--HHHhhcCCCCccHHHH
Q 038550 8 PAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPNSVTLTN----V--LPACARGHFLRPGKEI 80 (423)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~----l--~~~~~~~~~~~~a~~~ 80 (423)
+++|.+..+.- |.+..|..|.......-.++-|...|-+...- |++.-...-+. + ...-+--|++++|.++
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 34454444443 66688888888777777777777777665432 33211110000 0 1112235788888888
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhcC------CcchHHHHHHHHhcCCChhhHHHHHHHHHh---
Q 038550 81 HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR------DEVSYNILIVGYSQTSDCSESLSLFSEMRL--- 151 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--- 151 (423)
|-+|-+++ ..+..+.+.|++-...++++.... -..+|+.+...+.....|+.|.+.|..-..
T Consensus 757 yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~ 827 (1189)
T KOG2041|consen 757 YLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTEN 827 (1189)
T ss_pred hhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHh
Confidence 87776553 345667777888888887733211 124566666666666666666666543211
Q ss_pred ------------------cCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHH
Q 038550 152 ------------------LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213 (423)
Q Consensus 152 ------------------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 213 (423)
..++.+....-.+...+.+.|.-++|.+.+-+- +. | ...+..|...++|.+|.
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHH
Confidence 112334444444555555555555555443221 11 1 23444555566666666
Q ss_pred HHhccCCCC
Q 038550 214 KIFDCLPVK 222 (423)
Q Consensus 214 ~~~~~~~~~ 222 (423)
++-++..-|
T Consensus 899 elaq~~~l~ 907 (1189)
T KOG2041|consen 899 ELAQRFQLP 907 (1189)
T ss_pred HHHHhccch
Confidence 666555444
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.00012 Score=60.66 Aligned_cols=103 Identities=17% Similarity=0.082 Sum_probs=85.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
..-+.+.+++.+|+..|.+.++... -|.+-|..-..+|++.|.++.|++-.+..+... +-...+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 3457788999999999999998632 267778888899999999999999998888753 33477899999999999999
Q ss_pred HHHHHHHhhC-CCCCCHhHHHHHHHH
Q 038550 311 EDAVKLIKNL-PVEPDANIWGALLGA 335 (423)
Q Consensus 311 ~~a~~~~~~~-~~~~~~~~~~~l~~~ 335 (423)
++|++.|++. .+.|+-.+|..=+..
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999988 889987777655543
No 161
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.94 E-value=1.9e-05 Score=51.47 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=47.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
...|++++|+..++++.+..|.+..++..++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678899999999999999999999999999999999999999999988876543
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.93 E-value=0.00016 Score=50.45 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=42.2
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChh
Q 038550 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVE 343 (423)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 343 (423)
...+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.+++. ...| +..++..+...+...|+++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 333444445555555554444431 122233444444444455555555555443 2222 2234445555555555555
Q ss_pred HHHHHHHHHHhcCC
Q 038550 344 LGAWAAEHLFMLKP 357 (423)
Q Consensus 344 ~a~~~~~~~~~~~p 357 (423)
.|...++...+..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 55555555554443
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.92 E-value=1.6e-05 Score=42.36 Aligned_cols=29 Identities=41% Similarity=0.897 Sum_probs=19.3
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDG 254 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 254 (423)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.90 E-value=1.7e-05 Score=42.25 Aligned_cols=31 Identities=45% Similarity=0.782 Sum_probs=24.1
Q ss_pred chHHHHHHHHhcCCChhhHHHHHHHHHhcCC
Q 038550 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154 (423)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 154 (423)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
No 165
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.90 E-value=0.00032 Score=49.04 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=66.0
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHhcCC-CCchhhHHHHHHHHHhHh--------hHHhhhHHHHHHHHhccCcchHHHHH
Q 038550 128 ILIVGYSQTSDCSESLSLFSEMRLLGM-KHDVVSFMGAISACANLA--------AIKQGKEIHGVTIRKHLHTHLFVANS 198 (423)
Q Consensus 128 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 198 (423)
..|..+...+++.....+|+.++..|+ .|+..+|+.++.+.+++. +.-....+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345566667999999999999999999 999999999999987652 45567788999999999999999999
Q ss_pred HHHHHHh
Q 038550 199 ILDFYTR 205 (423)
Q Consensus 199 l~~~~~~ 205 (423)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 9887754
No 166
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.90 E-value=0.015 Score=51.42 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHH----HHHHhc---CChH---HHHHHHhhCCCCC----CHhHHHHHHHH--HHh
Q 038550 275 VEKGKKYFDEMQADSVKPTEMHYACMV----DLLGRA---GLME---DAVKLIKNLPVEP----DANIWGALLGA--CRI 338 (423)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---~~~~---~a~~~~~~~~~~~----~~~~~~~l~~~--~~~ 338 (423)
-++|..+++.+.+-. +-|..+-|.+. ..|..+ ..+. +-+.++++.|+.| +...-|.|..+ +..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 566777777776642 23333333322 223221 1222 2233445556665 44466667655 578
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 339 YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+|++.++.-.-.-+.+..| ++.+|..++-++...+++++|+.++.++.
T Consensus 475 qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 9999999988888888888 79999999999999999999999998763
No 167
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.88 E-value=5.6e-05 Score=50.05 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=52.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 333 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
...|.+.+++++|..+++++...+|.++..+...+.++.+.|++++|.+.+++..+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999999999999999887654
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.88 E-value=0.00023 Score=56.31 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEPD----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++.+..|.+...+..++.++.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 334444444455555555555444 11111 2345555566666666666666666666666666666666666666
Q ss_pred hcCC--------------hhHHHHHHHHHHhc
Q 038550 372 EAGK--------------WDEASKVRELMKSR 389 (423)
Q Consensus 372 ~~g~--------------~~~A~~~~~~m~~~ 389 (423)
..|+ +++|.+++++....
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 6555 45566666665543
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.88 E-value=0.0012 Score=61.62 Aligned_cols=66 Identities=20% Similarity=0.128 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
..|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...++++..++|.++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 33444433333344555555554444 3344444444444444555555555555555555544444
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.86 E-value=0.003 Score=54.41 Aligned_cols=167 Identities=14% Similarity=0.181 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHhc----CCCCc-hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHH
Q 038550 126 YNILIVGYSQTSDCSESLSLFSEMRLL----GMKHD-VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200 (423)
Q Consensus 126 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 200 (423)
|......|-..+++++|...|.+.... +-+.+ ...|......+ +..++++|...++ ..+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~---------------~A~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYE---------------KAI 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHH---------------HHH
Confidence 344556666677777777776665331 11111 11222222222 2235555555444 344
Q ss_pred HHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhcc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHhccC
Q 038550 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML-GEVDTAINLFEAMRED----GVGYD--PVSYIAILTACSHGG 273 (423)
Q Consensus 201 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~~ 273 (423)
..|...|++..|-..+ ..+...|-.. |+++.|++.|++..+. + .+. ...+..+...+.+.|
T Consensus 102 ~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 5566777776664443 4455666666 7788887777776442 2 111 234556666777788
Q ss_pred cHHHHHHHHHHHHHcCCCC-----Chh-hHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 274 LVEKGKKYFDEMQADSVKP-----TEM-HYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
++++|.++|++....-... +.. .+...+-++...||+..|.+.|++.
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888776642211 111 2223344555677777777777765
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.85 E-value=0.00025 Score=60.79 Aligned_cols=129 Identities=13% Similarity=0.125 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCChHHHHHHHhhC--CCCCCHhHHHHHHHHH
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL-LGRAGLMEDAVKLIKNL--PVEPDANIWGALLGAC 336 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~ 336 (423)
.+|..++...-+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|..+|+.. .+..+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 468888888999999999999999998653 3344555554444 33356777799999987 3455788999999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHC---GYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
...++.+.|..+|+++...-|.+. .+|..++..-.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998766554 57888999889999999999999998775
No 172
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.85 E-value=0.0045 Score=47.67 Aligned_cols=133 Identities=11% Similarity=0.024 Sum_probs=104.5
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-CCC---CHhHHH
Q 038550 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP-VEP---DANIWG 330 (423)
Q Consensus 255 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~---~~~~~~ 330 (423)
..|+...-..|..++...|+..+|...|++...--+.-|......+.++....+++..|...++++. ..| ++.+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 4677777778888999999999999999998876566788888888899999999999999988872 222 344555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 331 ALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 331 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.+.+.+...|+...|+..|+.+..--|. +.........+.++|+.+++..-+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6778899999999999999999887765 45555666778889988887765555544
No 173
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.84 E-value=0.017 Score=50.35 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=36.7
Q ss_pred HHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 038550 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280 (423)
Q Consensus 201 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 280 (423)
.-+...|+...|.++-.+..-|+-..|-..+.+++..++|++-..+... +-++.-|..++.+|.+.|+..+|..
T Consensus 185 ~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 3344445555555555555555555555555555555555544433221 1122445555555555555555554
Q ss_pred HHHH
Q 038550 281 YFDE 284 (423)
Q Consensus 281 ~~~~ 284 (423)
+..+
T Consensus 259 yI~k 262 (319)
T PF04840_consen 259 YIPK 262 (319)
T ss_pred HHHh
Confidence 4443
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.84 E-value=0.00067 Score=53.65 Aligned_cols=118 Identities=9% Similarity=0.029 Sum_probs=78.7
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHH
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD--PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 300 (423)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445667777777788888888888888776533222 3567777777888888888888888877753 2345555566
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
..++...|+...+..-++.. ...+++|.++++++.+.+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh
Confidence 66666666655544332221 112577888888888888876
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.83 E-value=0.0026 Score=54.87 Aligned_cols=107 Identities=14% Similarity=0.158 Sum_probs=64.0
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHc--CCCCC--hh
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVG-----YDPV-SYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPT--EM 295 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~ 295 (423)
.+..+...+.+.|++++|.++|++....... .+.. .|...+-++...|++..|...+++.... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4556677788899999999999988764322 1222 2333444666778999999999998765 33333 34
Q ss_pred hHHHHHHHHHh--cCChHHHHHHHhhCCCCCCHhHHHHHH
Q 038550 296 HYACMVDLLGR--AGLMEDAVKLIKNLPVEPDANIWGALL 333 (423)
Q Consensus 296 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~l~ 333 (423)
....|+.++-. ...++.+..-|+.+. +.|...-..|+
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l~ 275 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHHH
Confidence 45566666643 334666777777764 44554444443
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.82 E-value=5.8e-05 Score=51.56 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 038550 238 GEVDTAINLFEAMREDGVG-YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316 (423)
Q Consensus 238 g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 316 (423)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. ...+. .+....-.+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555554221 1223333345555555555555555555 21111 1122222334555555555555555
Q ss_pred Hh
Q 038550 317 IK 318 (423)
Q Consensus 317 ~~ 318 (423)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.80 E-value=0.0003 Score=55.43 Aligned_cols=93 Identities=12% Similarity=-0.079 Sum_probs=68.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
...|..+...+...|++++|+..|++. .+.|+ ..++..+...+...|++++|+..++++....|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566666677778888888887776 23332 3467778888888999999999999999888888887777777
Q ss_pred HHH-------hcCChhHHHHHHHHH
Q 038550 369 MYA-------EAGKWDEASKVRELM 386 (423)
Q Consensus 369 ~~~-------~~g~~~~A~~~~~~m 386 (423)
.+. ..|++++|+..+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 777 778887666655543
No 178
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.80 E-value=8.3e-05 Score=47.86 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=46.1
Q ss_pred HHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 300 MVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
+...+...|++++|...|+++ ...| +...+..+..++...|++++|...++++.+..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345677888888888888877 4456 556777778888888888888888888888888764
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.80 E-value=0.001 Score=61.96 Aligned_cols=136 Identities=13% Similarity=0.081 Sum_probs=98.3
Q ss_pred CCCCCHHHHHHHHHHHhc--c---CcHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhc--------CChHHHHHHHhh
Q 038550 254 GVGYDPVSYIAILTACSH--G---GLVEKGKKYFDEMQADSVKPT-EMHYACMVDLLGRA--------GLMEDAVKLIKN 319 (423)
Q Consensus 254 ~~~p~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~ 319 (423)
+.+.+...|..++.+... . +....|..+|++..+. .|+ ...|..+..++... ++...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345677888888887433 2 3477899999999986 454 44555544444321 123344454444
Q ss_pred C----CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcccc
Q 038550 320 L----PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392 (423)
Q Consensus 320 ~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 392 (423)
. ....++..+..+.-.....|++++|...++++.+++| +...|..++..+...|+.++|.+.+++....+..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3 1233567788777677778999999999999999999 5788999999999999999999999998776543
No 180
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.77 E-value=0.0011 Score=59.30 Aligned_cols=120 Identities=11% Similarity=0.044 Sum_probs=90.2
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCChHHHHHHHhhC---CCCCCHhH
Q 038550 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANI 328 (423)
Q Consensus 254 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~ 328 (423)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..++++.+++.= |+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34557777888888888888888888888888776 22233455668889999999999999888753 88899999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcchHHHHHHHHHhc
Q 038550 329 WGALLGACRIYGNVELGAWAAEHLFMLK-PQHCGYYILLSNMYAEA 373 (423)
Q Consensus 329 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 373 (423)
++.|+..+.+.|++..|.++...+...+ ..++.++..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999888888776644 55566655554444444
No 181
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.76 E-value=0.00034 Score=55.37 Aligned_cols=89 Identities=22% Similarity=0.319 Sum_probs=69.9
Q ss_pred CCChhhHHHHHHHHhc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----------------CcHHHHH
Q 038550 221 VKDSASWNTLILGYGM-----LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG----------------GLVEKGK 279 (423)
Q Consensus 221 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 279 (423)
..+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+-+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4566777777777764 477888888899999999999999999999988763 2345677
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038550 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGL 309 (423)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (423)
+++++|...|+-||..++..|++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888876654
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.75 E-value=0.012 Score=49.24 Aligned_cols=61 Identities=11% Similarity=-0.052 Sum_probs=34.8
Q ss_pred HHHHHhcCCChhhHHHHHHHHHhcCCCCch-hhH---HHHHHHHHhHhhHHhhhHHHHHHHHhccCc
Q 038550 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDV-VSF---MGAISACANLAAIKQGKEIHGVTIRKHLHT 191 (423)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 191 (423)
....+...|++++|.+.|+++...- |+. ... ..++.++.+.++++.|...++...+..+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 3444455677777777777776642 222 221 244455666677777777776666654433
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.73 E-value=0.025 Score=49.22 Aligned_cols=110 Identities=16% Similarity=0.179 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhc
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 339 (423)
.+.+..+.-|...|+...|.++-.+.. -|+...|...+.+|+..+++++-.++-.. +-++.-|...+.+|.+.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 345555666777888877777765553 37888888889999999999888776543 33457788888888899
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
|+..+|..+..++. +..-+..|.+.|++.+|.+.--+
T Consensus 251 ~~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 99888888877721 14456778888888888766443
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.73 E-value=0.00053 Score=61.30 Aligned_cols=119 Identities=11% Similarity=-0.005 Sum_probs=88.6
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHh---chhcC----CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhh
Q 038550 88 GLNFDLFLTNALTDMYAKCGCLNLAQNVF---NISFR----DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS 160 (423)
Q Consensus 88 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~---~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 160 (423)
+.+.+......+++.+....+++.+..++ +..+. -..+.+++++.|...|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33455566666777777777777777776 22111 233456888899999999999999988888899999999
Q ss_pred HHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc
Q 038550 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206 (423)
Q Consensus 161 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (423)
++.+|..+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999888888777766666666555555554
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.68 E-value=0.0026 Score=58.39 Aligned_cols=242 Identities=14% Similarity=0.078 Sum_probs=123.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHh--ch----------hcCCcchHHHHHHHHhcCCC--hhhHHHHHHHHHhcCCCCc
Q 038550 92 DLFLTNALTDMYAKCGCLNLAQNVF--NI----------SFRDEVSYNILIVGYSQTSD--CSESLSLFSEMRLLGMKHD 157 (423)
Q Consensus 92 ~~~~~~~l~~~~~~~g~~~~a~~~~--~~----------~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~ 157 (423)
....+.+-+..|...|.+++|.++- -. ..-+...++..=.+|.+..+ +-+.+--+++|+++|-.|+
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 3334444555667777777776554 00 01122334444455555544 3334445567777887677
Q ss_pred hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC--------------C
Q 038550 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK--------------D 223 (423)
Q Consensus 158 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------~ 223 (423)
... +...++-.|++.+|-++|.+--.. +..+..|.....+|.|.+++..-... +
T Consensus 635 ~iL---lA~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~ 702 (1081)
T KOG1538|consen 635 DLL---LADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARN 702 (1081)
T ss_pred HHH---HHHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh
Confidence 643 345566678888888887643211 33445555555566665555433210 1
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHH------HHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh
Q 038550 224 SASWNTLILGYGMLGEVDTAINLFEA------MREDGVGY---DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 294 (423)
+.-=.+....+...|+.++|..+.-+ +.+-+-+. +..+...+...+-+...+..|-++|..|-+.
T Consensus 703 ~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ 776 (1081)
T KOG1538|consen 703 IKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------ 776 (1081)
T ss_pred cCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------
Confidence 11111223334455665555544321 11111111 2334444444444555666677777666432
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhH-----------HHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANI-----------WGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~-----------~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
..+++.....+++++|..+-++. ...||+.. |.-.-.+|.+.|+..+|..+++++..
T Consensus 777 ---ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 ---KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ---HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 34567777788888888877776 33444321 12222455566666666666665543
No 186
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.68 E-value=0.0015 Score=51.45 Aligned_cols=62 Identities=11% Similarity=0.029 Sum_probs=30.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGY--DPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
.|..+...+...|++++|...|++.......| ...++..+...+...|++++|...++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555555555555554432111 122444555555555555555555555554
No 187
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.62 E-value=0.0033 Score=47.58 Aligned_cols=50 Identities=8% Similarity=-0.051 Sum_probs=18.8
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHh
Q 038550 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318 (423)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (423)
+|-..|++++|+..|....... +-+...+-.+..++...|+.+.|.+.|+
T Consensus 78 ~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 78 CCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3333344444444444433332 1223333333333344444444433333
No 188
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.59 E-value=0.034 Score=48.97 Aligned_cols=161 Identities=20% Similarity=0.161 Sum_probs=99.0
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCC-------ChhhHHHHHHHHhc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038550 198 SILDFYTRSGRIDLANKIFDCLPVK-------DSASWNTLILGYGM---LGEVDTAINLFEAMREDGVGYDPVSYIAILT 267 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 267 (423)
.++-+|....+++...++.+.+... ....-.....++.+ .|+.++|+.++..+....-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555677778888888888877643 22222334455566 7889999999988666666778888877776
Q ss_pred HHhc---------cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-hH---HHHHHH---hhC-------CCCC
Q 038550 268 ACSH---------GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL-ME---DAVKLI---KNL-------PVEP 324 (423)
Q Consensus 268 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~~-------~~~~ 324 (423)
.|-. ....++|...|.+.-+. .|+...=-.+...+...|. .+ +..++- ..+ .-..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 6532 22466777777766553 3443322222222233332 11 222221 111 1234
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
+-..+.+++.++.-.|+.++|.+.++++.+..|+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 566677888888889999999999999988876653
No 189
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.58 E-value=0.08 Score=50.98 Aligned_cols=218 Identities=14% Similarity=0.079 Sum_probs=150.5
Q ss_pred HHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHH--hhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChH
Q 038550 33 FAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPA--CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN 110 (423)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 110 (423)
....+++.+|+....++.++. |+.. |..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|.+.|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 456788999999999988763 4443 4444554 56899999999998888766533 8889999999999999999
Q ss_pred HHHHHh-c--hhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHh----------hHHhh
Q 038550 111 LAQNVF-N--ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA----------AIKQG 177 (423)
Q Consensus 111 ~a~~~~-~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------~~~~a 177 (423)
+|..+| + ...|+......+..+|.+.+++.+-.++--+|-+. ++-+...+-.+++.....- -..-|
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999999 2 33455566667778888888877666555555442 3556667777777665431 12335
Q ss_pred hHHHHHHHHhc-cCcchHHHHHHHHHHHhcCCHHHHHHHhc-----cCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038550 178 KEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFD-----CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251 (423)
Q Consensus 178 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (423)
.+..+.+.+.+ ..-+..-.......+...|.+++|.+++. .....+...-+--+..+...++|.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55566666544 22222222233445667889999999983 2233355555566777888899999999999998
Q ss_pred HcCC
Q 038550 252 EDGV 255 (423)
Q Consensus 252 ~~~~ 255 (423)
..|.
T Consensus 254 ~k~~ 257 (932)
T KOG2053|consen 254 EKGN 257 (932)
T ss_pred HhCC
Confidence 8764
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.58 E-value=0.018 Score=48.27 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=46.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCG---YYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+.+.|.+.|.+..|..-++.+.+.-|..+. +...++.+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 346688999999999999999998877654 46677889999999999998876654
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.53 E-value=0.0021 Score=46.77 Aligned_cols=55 Identities=16% Similarity=0.076 Sum_probs=28.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 331 ALLGACRIYGNVELGAWAAEHLFMLKPQ---HCGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 331 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
.+..++...|++++|..++++.....|+ +......++.++...|+.++|++.+-.
T Consensus 43 ~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 43 QLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555555555555555555554444 333444444455555555555555433
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.53 E-value=0.051 Score=47.25 Aligned_cols=282 Identities=18% Similarity=0.151 Sum_probs=179.9
Q ss_pred HHHHHHHHH--hcCChHHHHHHh----chhcCCcchHHHHHHH--HhcCCChhhHHHHHHHHHhcCCCCchh--hHHHHH
Q 038550 96 TNALTDMYA--KCGCLNLAQNVF----NISFRDEVSYNILIVG--YSQTSDCSESLSLFSEMRLLGMKHDVV--SFMGAI 165 (423)
Q Consensus 96 ~~~l~~~~~--~~g~~~~a~~~~----~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll 165 (423)
|..|-.++. -.|+-..|.+.- .....|....-.++.+ -.-.|+++.|.+-|+.|.. .|... -...|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHH
Confidence 444444443 346666666665 2334455555555443 4457999999999999975 33322 222333
Q ss_pred HHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC-----CCChh--hHHHHHHHHh---
Q 038550 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-----VKDSA--SWNTLILGYG--- 235 (423)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~--- 235 (423)
-...+.|+.+.|.++-+......... .......+...|..|+|+.|+++.+.-. ++++. .-..|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~l-~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQL-PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccCC-chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 34456788888888887776654433 3455678889999999999999998544 33332 1122222211
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 038550 236 MLGEVDTAINLFEAMREDGVGYDPV-SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314 (423)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 314 (423)
-.-+...|...-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+-+....|+ .+. +-.+.+.|+. +.
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gdt--a~ 312 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGDT--AL 312 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCCc--HH
Confidence 12345566655555444 456543 333445678999999999999999998744443 332 2233455553 33
Q ss_pred HHHhhC----CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH-hcCChhHHHHHHHHHHh
Q 038550 315 KLIKNL----PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA-EAGKWDEASKVRELMKS 388 (423)
Q Consensus 315 ~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 388 (423)
.-+++. ..+| +......+..+....|++..|..--+.+....|. ..+|..|.+.-. ..|+-.++.+.+-+...
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 333322 3455 5567777788889999999999998888888886 467777777654 44999999998887765
Q ss_pred cc
Q 038550 389 RE 390 (423)
Q Consensus 389 ~~ 390 (423)
.-
T Consensus 392 AP 393 (531)
T COG3898 392 AP 393 (531)
T ss_pred CC
Confidence 43
No 193
>PRK15331 chaperone protein SicA; Provisional
Probab=97.52 E-value=0.00084 Score=50.94 Aligned_cols=85 Identities=13% Similarity=0.100 Sum_probs=58.6
Q ss_pred HHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 038550 304 LGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 381 (423)
+...|++++|..+|+-+ -..| +..-|..|..++-..++++.|+..|..+..+.+++|......+.+|...|+.+.|+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 34567777777777665 2222 455566666666677777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 038550 382 VRELMKS 388 (423)
Q Consensus 382 ~~~~m~~ 388 (423)
.|+...+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 7776665
No 194
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.51 E-value=0.00055 Score=54.23 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=80.3
Q ss_pred HHhhccc--CCcChhhHHHHHHHHHhC-----CChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcC-------------
Q 038550 12 SYLFHNI--AEKNIVSWNAMVANFAQN-----RLELKALQLVREMPIHNEFPNSVTLTNVLPACARG------------- 71 (423)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------------- 71 (423)
...|+.. ..++-.+|..+++.|.+. |..+=....+..|.+-|+.-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4566665 447889999999998754 77788888899999999999999999999987542
Q ss_pred ---CCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 038550 72 ---HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108 (423)
Q Consensus 72 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 108 (423)
.+-+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2335688999999999999999999999999877664
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.49 E-value=0.0011 Score=55.82 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=45.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHhhC-CCCC----CHhHHHHH
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTE----MHYACMVDLLGRAGLMEDAVKLIKNL-PVEP----DANIWGAL 332 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~----~~~~~~~l 332 (423)
|...+....+.|++++|...|+.+.+.- |+. ..+-.+...|...|++++|...|+.+ ...| ....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4444433344566666666666665541 221 23444455555555555555555544 1112 12233333
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 333 LGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 333 ~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
...+...|+.+.|...|+.+.+..|.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 344445555555555555555555544
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.49 E-value=0.00023 Score=46.39 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCC
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYG-NVELGAWAAEHLFMLKP 357 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 357 (423)
..+|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++.+++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 344555556666666666666666655 3334 3445666666666666 56677777776666655
No 197
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.48 E-value=0.003 Score=48.41 Aligned_cols=113 Identities=20% Similarity=0.183 Sum_probs=73.1
Q ss_pred HhccCcHHHHHHHHHHHHHc--CC-CCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHH
Q 038550 269 CSHGGLVEKGKKYFDEMQAD--SV-KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345 (423)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 345 (423)
....++.+.+...++++... |. -++... ..-.......++.. -......++..+...|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 34566777788888777765 31 122111 11111222222222 123556677788899999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH-----hccccCCC
Q 038550 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK-----SREAKKNP 395 (423)
Q Consensus 346 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 395 (423)
...++.+...+|.+...|..++.+|...|+..+|.++|+++. +.|+.|.+
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 999999999999999999999999999999999999999884 34666654
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.47 E-value=0.0008 Score=43.66 Aligned_cols=49 Identities=10% Similarity=0.169 Sum_probs=25.4
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 271 HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
..|++++|..+|+.+.... +-+...+..+..+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555555555542 234444445555555555555555555555
No 199
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.057 Score=50.54 Aligned_cols=155 Identities=9% Similarity=0.070 Sum_probs=96.4
Q ss_pred CCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhC-CCCCCchhHHHHHHHhhcCCCCccHHHHHHHH
Q 038550 6 SRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPNSVTLTNVLPACARGHFLRPGKEIHARI 84 (423)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 84 (423)
|++++|.+++-.+..+|. .|..+.+.|+|-...++++.--.. .-..-..+|+.+...++....|++|.+.|..-
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566666666666654442 345566667776666665432110 00011245666667777777777777766543
Q ss_pred HHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHH
Q 038550 85 IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGA 164 (423)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 164 (423)
... ...+.++.+...+++-+.+....+.+....-.+...+.+.|.-++|.+.+-+.. .|- ..
T Consensus 823 ~~~---------e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aA 884 (1189)
T KOG2041|consen 823 GDT---------ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AA 884 (1189)
T ss_pred cch---------HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HH
Confidence 211 235666666667776666666667788888888999999999999888775542 232 34
Q ss_pred HHHHHhHhhHHhhhHHHHH
Q 038550 165 ISACANLAAIKQGKEIHGV 183 (423)
Q Consensus 165 l~~~~~~~~~~~a~~~~~~ 183 (423)
+..|...++|.+|.++-+.
T Consensus 885 v~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5567777888877776543
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.43 E-value=0.0014 Score=56.79 Aligned_cols=130 Identities=12% Similarity=-0.013 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHH----cCCC-CChhhHHHHHHHHHhcCChHHHHHHHhhC-------CCC-CCH
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQA----DSVK-PTEMHYACMVDLLGRAGLMEDAVKLIKNL-------PVE-PDA 326 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~-~~~ 326 (423)
..|..|...|.-.|+++.|+...+.=.. .|-+ .....+..|..+++-.|+++.|.+.|+.. +.+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4567777777778888888876654322 1211 22345667788888888999998888754 222 234
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhc----C--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 327 NIWGALLGACRIYGNVELGAWAAEHLFML----K--PQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
...-+|.++|....+++.|+.++.+-..+ + .....++..|+.+|...|..+.|+...+.-.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45566778888888888888877765442 2 334567888888999999998888877766544
No 201
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.41 E-value=0.041 Score=44.82 Aligned_cols=176 Identities=13% Similarity=-0.003 Sum_probs=85.3
Q ss_pred HHHHHhcCCChhhHHHHHHHHHhcCC--CCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc
Q 038550 129 LIVGYSQTSDCSESLSLFSEMRLLGM--KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206 (423)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (423)
....+...|++.+|...|+++...-. +--......++.++.+.|+++.|...++..++.-+.....-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34455566777777777777766421 1112344455666667777777777777766654433322222222222211
Q ss_pred CCHHHHHHHhccCCCCC-------hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 038550 207 GRIDLANKIFDCLPVKD-------SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279 (423)
Q Consensus 207 ~~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 279 (423)
....... ....| ...+..++.-|-...-..+|...+..+.+. =...-..+..-|.+.|.+..|.
T Consensus 91 ~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 91 KQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHH
T ss_pred HhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHH
Confidence 1111111 01111 224555666666666666666655555432 0111122445577777777777
Q ss_pred HHHHHHHHc--CCCCChhhHHHHHHHHHhcCChHHH
Q 038550 280 KYFDEMQAD--SVKPTEMHYACMVDLLGRAGLMEDA 313 (423)
Q Consensus 280 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 313 (423)
.-++.+++. +.+........++.+|.+.|..+.+
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777776 1111223445566667777766643
No 202
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.39 E-value=0.1 Score=47.45 Aligned_cols=152 Identities=13% Similarity=0.098 Sum_probs=104.9
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
..+|-..+..-.+..-+..|..+|.+..+.+..+ +...+.+++..+|. ++.+-|.++|+--.+. +..+..--...+.
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence 3456667777777778888888898888887766 66677777776665 6778888888876665 2233444455677
Q ss_pred HHHhcCChHHHHHHHhhC---CCCC--CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----cchHHHHHHHHHhc
Q 038550 303 LLGRAGLMEDAVKLIKNL---PVEP--DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH----CGYYILLSNMYAEA 373 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~---~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 373 (423)
-+...++-..+..+|++. .+.| ...+|..++..-..-|+...+.++-++....-|.+ ...-..++.-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 777888888888888887 2344 34688888888888899888888888877655521 12233444555555
Q ss_pred CChh
Q 038550 374 GKWD 377 (423)
Q Consensus 374 g~~~ 377 (423)
+.+.
T Consensus 524 d~~~ 527 (656)
T KOG1914|consen 524 DLYP 527 (656)
T ss_pred cccc
Confidence 5543
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.38 E-value=0.0058 Score=44.47 Aligned_cols=91 Identities=11% Similarity=0.026 Sum_probs=54.8
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHhcCCCCc--hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCc--chHHHHHHHHHH
Q 038550 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHD--VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT--HLFVANSILDFY 203 (423)
Q Consensus 128 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 203 (423)
.+..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++......+.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345666777888888888888888775544 2345556667777778888888877776643321 111112233344
Q ss_pred HhcCCHHHHHHHhcc
Q 038550 204 TRSGRIDLANKIFDC 218 (423)
Q Consensus 204 ~~~~~~~~A~~~~~~ 218 (423)
...|+.++|...+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 555666665555433
No 204
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.36 E-value=0.084 Score=45.96 Aligned_cols=287 Identities=13% Similarity=0.066 Sum_probs=162.4
Q ss_pred hhHHHHHHHHHh--CCChHHHHHHHhhchhCCCCCCchhHHHHHHH--hhcCCCCccHHHHHHHHHHcCCCCchHHHHHH
Q 038550 24 VSWNAMVANFAQ--NRLELKALQLVREMPIHNEFPNSVTLTNVLPA--CARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99 (423)
Q Consensus 24 ~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 99 (423)
..|..|-.++.. .|+-..|.++-.+..+. +.-|...+..++.+ -.-.|+++.|.+-|+.|.... +...--...|
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgL 160 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGL 160 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHH
Confidence 345556555543 46777777766554422 33355555555544 345788888888888887421 1111112233
Q ss_pred HHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcC-CCCchh--hHHHHHHHHHh--
Q 038550 100 TDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVV--SFMGAISACAN-- 170 (423)
Q Consensus 100 ~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~--~~~~ll~~~~~-- 170 (423)
.-.--+.|..+.|...- ...+.-...+...+...+..|+|+.|+++++.-+... +.++.. .-..|+.+-..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 33334667777777666 3334455677888888888899999888888776543 333332 12223322211
Q ss_pred -HhhHHhhhHHHHHHHHhccCcchHHH-HHHHHHHHhcCCHHHHHHHhccCC--CCChhhHHHHHHHHhccCCHHHHHHH
Q 038550 171 -LAAIKQGKEIHGVTIRKHLHTHLFVA-NSILDFYTRSGRIDLANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINL 246 (423)
Q Consensus 171 -~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~ 246 (423)
..+...|...-.+..+ +.|+..-- ..-..++.+.|+..++-.+++.+= .|.+..+... .+.+.|+ .+..-
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gd--ta~dR 314 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGD--TALDR 314 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCC--cHHHH
Confidence 1234444444444443 23332211 223467788888888888887764 3444433322 2345554 33333
Q ss_pred HHHHHHc-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChHHHHHHHhhC
Q 038550 247 FEAMRED-GVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG-RAGLMEDAVKLIKNL 320 (423)
Q Consensus 247 ~~~m~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 320 (423)
++..... ..+| +..+...+..+-...|++..|..--+.... ..|....|..|.+.-. ..|+-.++...+.+.
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3333221 1344 345666667777778888877776665554 4677777776665543 458888888887765
No 205
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.14 Score=48.38 Aligned_cols=326 Identities=11% Similarity=0.080 Sum_probs=167.6
Q ss_pred HHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCC--ccHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 038550 27 NAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL--RPGKEIHARIIRKGLNFDLFLTNALTDMYA 104 (423)
Q Consensus 27 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (423)
..+|+-+...+.+..|+++-..+...-.. ....|.....-+.+..+. +.+.+..++=+.... .....|..+..--.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 34556667777788888877666542111 134555555555444321 122222222121111 23345566666666
Q ss_pred hcCChHHHHHHhchhcCCc---------chHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHH
Q 038550 105 KCGCLNLAQNVFNISFRDE---------VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175 (423)
Q Consensus 105 ~~g~~~~a~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 175 (423)
.+|+.+-|..+++..+++. .-+...+.-....|+.+....++-.+... .+...|...+ .+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhch
Confidence 7888888888884444322 22344455555566666666555555442 1111221111 2333
Q ss_pred hhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccC------CCCChhhHHHHHHHHhccCC----------
Q 038550 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL------PVKDSASWNTLILGYGMLGE---------- 239 (423)
Q Consensus 176 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~li~~~~~~g~---------- 239 (423)
.|..+|.+..+..-. ..+-+.|-...+...+..+--+- ..+-..........+.+...
T Consensus 590 ~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 590 LALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 444444444432111 11222222222222221111100 00111112222233333222
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHh
Q 038550 240 VDTAINLFEAMRE-DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318 (423)
Q Consensus 240 ~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (423)
..+-+.+.+.+.. .|......+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 1111222222221 2222333455555666777788888888777664 4788888888888999999888877776
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 038550 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384 (423)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 384 (423)
... .+.-|.-...+|.+.|+.++|.+++-+..... -.+.+|.+.|++.+|.++--
T Consensus 740 skk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 740 SKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ccC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHH
Confidence 653 24556677788889999999888876643322 45678888888888876643
No 206
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.012 Score=49.39 Aligned_cols=115 Identities=15% Similarity=0.060 Sum_probs=87.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHhhC
Q 038550 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG---LMEDAVKLIKNL 320 (423)
Q Consensus 244 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~ 320 (423)
..-++.-...+ +-|...|..|..+|...|+.+.|..-|....+.. +++...+..+..++.... ...++..+|+++
T Consensus 142 ~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 142 IARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 33334333332 3378899999999999999999999999999873 456677777777665432 467888999988
Q ss_pred -CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 321 -PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 321 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
...| |+....-|...+...|++.+|...|+.+.+..|.+.
T Consensus 220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 5566 566666677889999999999999999999887653
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.019 Score=46.98 Aligned_cols=136 Identities=12% Similarity=0.066 Sum_probs=89.5
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHH---
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV--- 301 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 301 (423)
...+.++..+.-.|.+.-....+++.++...+.++.....+...-.+.|+.+.|..+|++..+..-..+..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34456666667777888888888888887655677777788888888888888888888776552234433443333
Q ss_pred --HHHHhcCChHHHHHHHhhCCC--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 302 --DLLGRAGLMEDAVKLIKNLPV--EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 302 --~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
..|.-.+++..|...+.++.. ..|+...|.-.-...-.|+...|++..+.+.+..|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 334455677777777777632 22444444444444556778888888888888777643
No 208
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.32 E-value=0.00045 Score=40.19 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
.++..+..+|...|++++|+++++++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778899999999999999999999999999988887764
No 209
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.073 Score=46.65 Aligned_cols=257 Identities=9% Similarity=-0.110 Sum_probs=114.9
Q ss_pred HHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 038550 27 NAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC 106 (423)
Q Consensus 27 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 106 (423)
......+.+..++..|+..+....+... -+..-|..-+..+...++++.+.--.+.-++.. +-....+.-.-.++...
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhh
Confidence 3444556667778888888888877642 234455555556666666666665554444332 11112233333344444
Q ss_pred CChHHHHHHhch----------------h-----cCCcchHHHH-HHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHH
Q 038550 107 GCLNLAQNVFNI----------------S-----FRDEVSYNIL-IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGA 164 (423)
Q Consensus 107 g~~~~a~~~~~~----------------~-----~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 164 (423)
++..+|.+.++. . +|....|..+ ..++.-.|++++|.+.--..++.. ..+......-
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vr 209 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVR 209 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhc
Confidence 444444443310 0 0111122222 234455566666666555554432 1122222111
Q ss_pred HHHHHhHhhHHhhhHHHHHHHHhccCcchH-----------HHHHHHHHHHhcCCHHHHHHHhccCCC-------CChhh
Q 038550 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLF-----------VANSILDFYTRSGRIDLANKIFDCLPV-------KDSAS 226 (423)
Q Consensus 165 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~ 226 (423)
..++.-.++.+.+...|++.+..++..... .+..-.+-..+.|++.+|.+.|.+... ++...
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 222233455566666666555543321110 001111223345555555555554431 12333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYD-PVSYIAILTACSHGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (423)
|........+.|+.++|+.--+..... .|. ...|..-..++...+++++|.+-++...+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444445555555555555544432 111 112222233344445555555555555543
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.28 E-value=0.0011 Score=43.69 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=47.4
Q ss_pred HHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHH
Q 038550 302 DLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364 (423)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 364 (423)
..|.+.+++++|.++++++ ...| ++..+......+...|++++|...++++.+..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4567788888888888877 4455 5556667777888888888888888888888887665543
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.28 E-value=0.0016 Score=57.93 Aligned_cols=62 Identities=10% Similarity=-0.042 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCH----hHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDA----NIWGALLGACRIYGNVELGAWAAEHLFML 355 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 355 (423)
...++.+..+|...|++++|+..|++. .+.|+. ..|..+..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444455555555555555555443 344432 12444555555555555555555555544
No 212
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.23 E-value=0.00026 Score=38.36 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 038550 349 AEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 349 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 381 (423)
|+++++.+|+++.+|..++..|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
No 213
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.23 E-value=0.024 Score=41.10 Aligned_cols=141 Identities=11% Similarity=0.063 Sum_probs=85.2
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 313 (423)
+.-.|..++..+++.+.... .+..-+|.+|.-....-+-+-..++++.+-+ -.|. ..+|++...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHH
Confidence 34568888888888887764 2455666666554444444444444443332 2222 123444444
Q ss_pred HHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcccc
Q 038550 314 VKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392 (423)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 392 (423)
...+-.++ .+....+..+..+..+|+-+.-.+++..+.+.+..+|.+...++.+|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444442 234455666788889999999999999988777777899999999999999999999999999998874
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.19 E-value=0.0094 Score=50.34 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCCCH----hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc---chHHHHHH
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEPDA----NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC---GYYILLSN 368 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 368 (423)
|...+..+.+.|++++|...|+.+ ...|+. ..+--+...|...|++++|...|+.+.+..|+++ .++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444556677777666665 223332 3445556666677777777777777766655543 33444455
Q ss_pred HHHhcCChhHHHHHHHHHHhcc
Q 038550 369 MYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
++...|++++|..+|+++.+..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 6666777777777777666543
No 215
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.18 E-value=0.015 Score=47.31 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=38.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCChhHHH
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGY---YILLSNMYAEAGKWDEAS 380 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~ 380 (423)
+...|.+.|.+..|..-++.+++.-|+.+.. ...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4577899999999999999999998887644 566788899999887544
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.15 E-value=0.0071 Score=44.49 Aligned_cols=80 Identities=13% Similarity=0.155 Sum_probs=46.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHH---------------HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMR---------------EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD- 288 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~---------------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 288 (423)
.++..+|.++++.|+.+....+++..= .....|+..+..+++.+|+..+++..|.++++...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344555555555555555555554331 1224566666666666666666666666666666665
Q ss_pred CCCCChhhHHHHHHHH
Q 038550 289 SVKPTEMHYACMVDLL 304 (423)
Q Consensus 289 ~~~~~~~~~~~l~~~~ 304 (423)
+++.+..+|..|++-.
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6555666666666443
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.012 Score=48.18 Aligned_cols=125 Identities=11% Similarity=0.054 Sum_probs=55.1
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhcC-----CcchHHH-----HHH
Q 038550 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-----DEVSYNI-----LIV 131 (423)
Q Consensus 62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~-----l~~ 131 (423)
+.++..+...+.+.-....+.+.++...+-++.....|++.-.+.|+.+.|...|+..++ |....+. ...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444444455555555555555544444445555555555555555555555521111 1112211 222
Q ss_pred HHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHh
Q 038550 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187 (423)
Q Consensus 132 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 187 (423)
.|.-.+++..|...+.+..... +.|....|.-.-+..-.|+...|.+.++.+...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344445555555555444432 223333333333333445555555555555544
No 218
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.13 E-value=0.08 Score=41.10 Aligned_cols=98 Identities=10% Similarity=-0.002 Sum_probs=45.6
Q ss_pred CCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----CChhhHHH
Q 038550 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-----KDSASWNT 229 (423)
Q Consensus 155 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~ 229 (423)
.|+...-..+..++...|+..+|...|++...--...|....-.+.++....+++..|...++.+-+ .++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444445555555555555555555554443444444444444444444555444444444321 12223333
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH
Q 038550 230 LILGYGMLGEVDTAINLFEAMRE 252 (423)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~ 252 (423)
+...+...|++.+|..-|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 44444455555555555555444
No 219
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.12 E-value=0.0071 Score=52.63 Aligned_cols=95 Identities=8% Similarity=-0.081 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHc----CC-CCChhhHHHHHHHHHhcCChHHHHHHHhhC-------C-CCCCH
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQAD----SV-KPTEMHYACMVDLLGRAGLMEDAVKLIKNL-------P-VEPDA 326 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~-~~~~~ 326 (423)
..+..+..++.-.|+++.|.+.|+..... |- .....+.-+|...|.-..++++|+.++.+- + ..-..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34555555555556666666555543322 10 111223334455555555555555554432 1 11234
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 327 NIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
..+.+|..++...|.-++|+.+.+...+
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4555566666666666666555555443
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.11 E-value=0.001 Score=44.58 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 327 NIWGALLGACRIYGNVELGAWAAEHLFML----KPQH---CGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.+++.+...|...|++++|+..++++.+. ++.+ ..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46777888888888999988888888764 2222 44577888999999999999999988754
No 221
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.35 Score=45.93 Aligned_cols=103 Identities=19% Similarity=0.090 Sum_probs=78.1
Q ss_pred HHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 279 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
+++.+.+... |..-...+.+--+.-+...|+..+|.++-++.+ -||...|.-=+.++...+++++-+++-+. ..+
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAks---kks 743 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKS---KKS 743 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhc---cCC
Confidence 3444444444 444455566667778888999999999999997 68888888888999999999976655433 222
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 358 QHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 358 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
|--|.-.+.+|.+.|+.+||..++.+..
T Consensus 744 --PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 744 --PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred --CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 5568888899999999999999987653
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.029 Score=49.01 Aligned_cols=95 Identities=11% Similarity=0.067 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVE-PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
.+++.|.-+|.+.+++.+|++.-.+. ... +|....-.=..++...|+++.|+..|+++.+..|.|-.+-..++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45667778889999999999887766 333 4666666667899999999999999999999999998888888877776
Q ss_pred cCChhHH-HHHHHHHHhc
Q 038550 373 AGKWDEA-SKVRELMKSR 389 (423)
Q Consensus 373 ~g~~~~A-~~~~~~m~~~ 389 (423)
...+.+. .++|..|...
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6666554 7889998764
No 223
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.74 E-value=0.39 Score=42.86 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHh-HHHHHHHHH
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDAN-IWGALLGAC 336 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~ 336 (423)
..|...+.+..+...++.|..+|-++.+.| +.++...+++++..++ .|+..-|..+|+-- ..-||.. ..+..+..+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345566777777788899999999999987 6788899999998776 67888888888753 3345444 445667778
Q ss_pred HhcCChhHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQH--CGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
...++-..|..+|+...+.-..+ ...|..++..-..-|+...+..+=++|.+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 88899999999999665533222 45677888777778888777766666644
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.71 E-value=0.33 Score=43.03 Aligned_cols=167 Identities=16% Similarity=0.083 Sum_probs=106.3
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHcCCCCChhhH
Q 038550 224 SASWNTLILGYGMLGEVDTAINLFEAMREDG---VGYDPVSYIAILTACSH---GGLVEKGKKYFDEMQADSVKPTEMHY 297 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 297 (423)
..+...++-+|....+++..+++++.+.... +.-....-....-++-+ .|+.++|..++..+....-.++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344466667999999999999999998752 11122333344556677 89999999999996666557888888
Q ss_pred HHHHHHHH----h-----cCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCC-hh---HHHHHHHH----HHhcC--C
Q 038550 298 ACMVDLLG----R-----AGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGN-VE---LGAWAAEH----LFMLK--P 357 (423)
Q Consensus 298 ~~l~~~~~----~-----~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~~~----~~~~~--p 357 (423)
..+.+.|- . ....++|...|.+. .+.||...--.+...+...|. .+ +..++-.+ ..+.+ .
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 88877663 2 22477888888877 556655432222222333332 22 22222211 11122 1
Q ss_pred CCcch--HHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 358 QHCGY--YILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 358 ~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
..... +..++.+..-.|++++|.+.+++|....
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 22222 3467788889999999999999998763
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.70 E-value=0.068 Score=49.56 Aligned_cols=176 Identities=14% Similarity=0.124 Sum_probs=93.9
Q ss_pred hHHHHHHHHHhCCCh--HHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHH
Q 038550 25 SWNAMVANFAQNRLE--LKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDM 102 (423)
Q Consensus 25 ~~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (423)
.++..-.+|.+.++. -+.+.-++++++.|-.|+... +...|+-.|++.+|.++|.+ .|.+ |..+.+
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEm 667 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEM 667 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHH
Confidence 344444556555443 344445566777776676543 33446667788888777753 3332 223444
Q ss_pred HHhcCChHHHHHHh-chh---------c-----CCcchHHHHHHHHhcCCChhhHHHHHHH------HHhcCC---CCch
Q 038550 103 YAKCGCLNLAQNVF-NIS---------F-----RDEVSYNILIVGYSQTSDCSESLSLFSE------MRLLGM---KHDV 158 (423)
Q Consensus 103 ~~~~g~~~~a~~~~-~~~---------~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~------m~~~~~---~~~~ 158 (423)
|.....++.|.++. ... + .++.-=.+....+...|+.++|..+.-+ +.+.+- ..+.
T Consensus 668 yTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~er 747 (1081)
T KOG1538|consen 668 YTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAER 747 (1081)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhh
Confidence 44445555555554 100 0 0111112345556667777777665421 111111 1223
Q ss_pred hhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC
Q 038550 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221 (423)
Q Consensus 159 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 221 (423)
.+...+..-+.+...+..|-++|..|-.. .++++.....++|++|..+-++.++
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 34444444444555666677777665432 3567777778888888888877764
No 226
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.62 E-value=0.75 Score=44.62 Aligned_cols=133 Identities=11% Similarity=-0.109 Sum_probs=72.9
Q ss_pred HhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCChHHH
Q 038550 34 AQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLA 112 (423)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a 112 (423)
.+.|++..+..+...+....+ ..-..|..+...+. ....+ ++-.-+.+.. .+.....-...+..+.+.+++...
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAV---QVTNFIRANPTLPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHH
Confidence 456677777776666542211 11112222222111 11222 3333333332 222333444555667778888888
Q ss_pred HHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHh
Q 038550 113 QNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172 (423)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 172 (423)
..++...+.+...-..+..+....|+.++|....+.+-..| ...+..+..++..+.+.|
T Consensus 119 ~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 119 LAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 88444445566666778888888898888877777776555 334556666666655444
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.58 E-value=0.031 Score=42.72 Aligned_cols=69 Identities=14% Similarity=0.255 Sum_probs=40.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-----CCCCChhh
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-----SVKPTEMH 296 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 296 (423)
...++..+...|+++.|..+.+.+.... +.+...|..+|.+|...|+...|.++|+.+.+. |+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4445556666777777777777777653 236667777777777777777777777665432 66666554
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.56 E-value=0.09 Score=39.22 Aligned_cols=60 Identities=23% Similarity=0.195 Sum_probs=43.3
Q ss_pred HHHhcCChHHHHHHHhhC----CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 303 LLGRAGLMEDAVKLIKNL----PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
...+.|++++|.+.|+.+ +..| ....-..|+.+|.+.+++++|...+++.+++.|.++.+
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 345677788888777777 1222 33455667788888888888888888888888887765
No 229
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.56 E-value=0.03 Score=40.51 Aligned_cols=87 Identities=21% Similarity=0.184 Sum_probs=42.6
Q ss_pred HHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcc---hHHHHHHHHHhcCChh
Q 038550 304 LGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLK-PQHCG---YYILLSNMYAEAGKWD 377 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~---~~~~l~~~~~~~g~~~ 377 (423)
+...|+.+.|++.|.+. .+.| ....||.-..++.-+|+.++|++-++++.++. |.... .|..-+..|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 34455555555555544 2222 44455555555555555555555555555543 22111 1333334455555555
Q ss_pred HHHHHHHHHHhcc
Q 038550 378 EASKVRELMKSRE 390 (423)
Q Consensus 378 ~A~~~~~~m~~~~ 390 (423)
.|..-|+...+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 5555555544443
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.56 E-value=0.0046 Score=41.37 Aligned_cols=27 Identities=11% Similarity=0.284 Sum_probs=14.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
+|+.+...|...|++++|+..|++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555443
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.51 E-value=0.17 Score=46.41 Aligned_cols=164 Identities=15% Similarity=0.108 Sum_probs=110.8
Q ss_pred HHHHhcCCChhhHHHHHHH-HHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCC
Q 038550 130 IVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 208 (423)
.....-.++++++.+.+.. -.-..++ ....+.++..+.+.|..+.|.++...- ..-.+...+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCC
Confidence 3445567888887777651 1111122 445778888888899999988875432 234456678999
Q ss_pred HHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038550 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (423)
++.|.++.+... +...|..|.....+.|+++-|.+.|.+... +..|+-.|...|+.+...++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999998877 777999999999999999999999987553 556666778888888888888777776
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 038550 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324 (423)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 324 (423)
| . ++....++.-.|+.++..+++.+.+.-|
T Consensus 403 ~-~-----~n~af~~~~~lgd~~~cv~lL~~~~~~~ 432 (443)
T PF04053_consen 403 G-D-----INIAFQAALLLGDVEECVDLLIETGRLP 432 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT-HH
T ss_pred c-C-----HHHHHHHHHHcCCHHHHHHHHHHcCCch
Confidence 5 2 4555666777899999998888776333
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.44 E-value=0.35 Score=45.00 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=108.6
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCCh
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDG-VGYDP------VSYIAILTACSH----GGLVEKGKKYFDEMQADSVKPTE 294 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~------~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 294 (423)
.+..++....-.||-+.+++.+.+..+.+ ++ .+ ..|..++..++. ....+.|.++++.+... -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCc
Confidence 44555666667788888888877765532 22 11 234444444433 45678899999999886 4666
Q ss_pred hhHHHH-HHHHHhcCChHHHHHHHhhCCC-C-----CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHH-H
Q 038550 295 MHYACM-VDLLGRAGLMEDAVKLIKNLPV-E-----PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL-L 366 (423)
Q Consensus 295 ~~~~~l-~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l 366 (423)
..|... .+.+...|++++|++.|++... . .....+--+...+....++++|...+.++.+....+..+|.- .
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 555433 3556678999999999997621 1 123344445566788899999999999999987776666553 4
Q ss_pred HHHHHhcCCh-------hHHHHHHHHHHhc
Q 038550 367 SNMYAEAGKW-------DEASKVRELMKSR 389 (423)
Q Consensus 367 ~~~~~~~g~~-------~~A~~~~~~m~~~ 389 (423)
+.++...|+. ++|.+++.+....
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 4556677888 8888888887654
No 233
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.39 E-value=0.28 Score=37.08 Aligned_cols=126 Identities=13% Similarity=0.064 Sum_probs=79.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (423)
...++..+...+.+......++.+...+. .+...++.++..|++.+. .+....++. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 44566667677788888888888877763 566778888888876543 333344332 1233444556777778
Q ss_pred cCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIY-GNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 307 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
.+.++++.-++.+++. +...+..+... ++++.|.+++.+ +.++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 8888888888888752 22223333333 777877777665 335566777666554
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.3 Score=39.82 Aligned_cols=201 Identities=12% Similarity=0.030 Sum_probs=89.8
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHH
Q 038550 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204 (423)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (423)
.|.....+|...+++++|...+.+..+. ...+...| -..+..+.|..+.+++.+.. --...|+.-...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 4555566666677777777766655431 11111111 11222333333333333321 11233444555566
Q ss_pred hcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHc---CCC--CCHHHHHHHHHHHhccCcHHHHH
Q 038550 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED---GVG--YDPVSYIAILTACSHGGLVEKGK 279 (423)
Q Consensus 205 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~--p~~~~~~~ll~~~~~~~~~~~a~ 279 (423)
.+|.++.|-..+++.- -...+.++++|++++++.... +-+ --...+..+-..+.+..++++|-
T Consensus 103 E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 6666655544443221 112344566666666654321 100 01123344444555666666555
Q ss_pred HHHHHHHHcC--C--CCC-hhhHHHHHHHHHhcCChHHHHHHHhhC---C--CC-CCHhHHHHHHHHHHhcCChhHHHHH
Q 038550 280 KYFDEMQADS--V--KPT-EMHYACMVDLLGRAGLMEDAVKLIKNL---P--VE-PDANIWGALLGACRIYGNVELGAWA 348 (423)
Q Consensus 280 ~~~~~~~~~~--~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~---~--~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 348 (423)
..+.+-.... + -++ ...|-..|-.|....++..|...++.- + .. .+..+...|+.+| ..||.+++..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 5444322210 0 111 122334444455556666666666653 1 11 2444555555554 44555554443
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.47 Score=40.02 Aligned_cols=144 Identities=14% Similarity=0.117 Sum_probs=66.2
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 313 (423)
....|++..|..+|......... +...-..+..+|...|+.+.|..++..+-..--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34555666666666655554222 23344445555666666666666655543321111111111223333344444433
Q ss_pred HHHHhhCCCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCChhH
Q 038550 314 VKLIKNLPVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLK--PQHCGYYILLSNMYAEAGKWDE 378 (423)
Q Consensus 314 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~ 378 (423)
..+-++..-.| |...-..+...+...|+.+.|.+.+-.+.+.+ -.+...-..++..+.-.|.-+.
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 44444443344 44444555555556666666655554444432 3334444555555555554333
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.32 E-value=0.05 Score=45.09 Aligned_cols=98 Identities=20% Similarity=0.269 Sum_probs=77.4
Q ss_pred HHHhccCC--CCChhhHHHHHHHHhc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC------------
Q 038550 213 NKIFDCLP--VKDSASWNTLILGYGM-----LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG------------ 273 (423)
Q Consensus 213 ~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------ 273 (423)
+..|.... +.|-.+|...+..+.. .+.++-....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 45555555 5577788888877654 3567777788899999999999999999999876642
Q ss_pred ----cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 274 ----LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 274 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
+-.-++.++++|...|+.||..+-..|+.++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2244789999999999999999999999999887753
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.30 E-value=0.041 Score=45.61 Aligned_cols=101 Identities=18% Similarity=0.141 Sum_probs=57.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHHHHhhC----CCCC-CHhHHHHHH
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADS--VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL----PVEP-DANIWGALL 333 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~-~~~~~~~l~ 333 (423)
.|+.-+.. .+.|++..|...|...++.. -.-....+-.|..++...|++++|...|..+ +..| -+..+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 34566777777777777652 1112233444666666677777766666555 2222 234555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 334 GACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 334 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
....+.|+.++|...|+++.+.-|..+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 56666666666666666666666665443
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.19 Score=42.95 Aligned_cols=149 Identities=14% Similarity=0.030 Sum_probs=65.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHH----HHHHHHHhcCChHH
Q 038550 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA----CMVDLLGRAGLMED 312 (423)
Q Consensus 237 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~ 312 (423)
.|+..+|-..++++.+. .+.|..++...=.+|...|+.+.-...++++... ..++...|. .+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34455555555555543 2224444444444555555555555555555443 122222222 22222335555555
Q ss_pred HHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----cchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 313 AVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH----CGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 313 a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
|++.-++. .+.| |.....++...+-..|+..++.++..+-...-... ..-|...+-.+...+.++.|+++|+.=
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 55555544 3333 44444444455555555555555444432211000 011223333445555666666655544
Q ss_pred H
Q 038550 387 K 387 (423)
Q Consensus 387 ~ 387 (423)
.
T Consensus 274 i 274 (491)
T KOG2610|consen 274 I 274 (491)
T ss_pred H
Confidence 3
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.17 E-value=0.043 Score=49.15 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE----MHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
+...++.+..+|...|++++|...|++.++. .|+. .+|..+..+|...|+.++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5677888888899999999999999888875 4553 34778888888999999999888877
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=96.14 E-value=0.12 Score=39.48 Aligned_cols=84 Identities=7% Similarity=-0.077 Sum_probs=66.3
Q ss_pred HhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhH
Q 038550 67 ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSES 142 (423)
Q Consensus 67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a 142 (423)
-+-..|++++|..+|.-+...+ .-+..-+..|..++-..+++++|...| .....|...+.....++...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3557899999999998887765 345666778888888889999999888 33456777777788888889999999
Q ss_pred HHHHHHHHh
Q 038550 143 LSLFSEMRL 151 (423)
Q Consensus 143 ~~~~~~m~~ 151 (423)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 988888776
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.19 Score=42.21 Aligned_cols=142 Identities=8% Similarity=-0.079 Sum_probs=86.3
Q ss_pred HHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHh---c
Q 038550 30 VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK---C 106 (423)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 106 (423)
.......|++..|..+|....+.. +-+...-..+..++...|+.+.|..++..+....-.........-+..+.+ .
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344567788888888887777653 224456666777788888888888888776543212222222223333333 3
Q ss_pred CChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCC-CCchhhHHHHHHHHHhHh
Q 038550 107 GCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM-KHDVVSFMGAISACANLA 172 (423)
Q Consensus 107 g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~ 172 (423)
++.....+-+...+.|...-..+...+...|+.+.|++.+-.+..+.. --|...-..++..+.-.|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444455555555566767777777788888888888877666655421 234455566666666555
No 242
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.12 E-value=0.079 Score=39.02 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhh-CCCCCCHhHHHHHHHHH
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN-LPVEPDANIWGALLGAC 336 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~l~~~~ 336 (423)
|..++..++.++++.|+.+....+++..- |+.++...- .+. +.. -+..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~---------~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK---------EGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc---------cCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 34567777888888888877777765432 222211000 000 111 12445555555666666
Q ss_pred HhcCChhHHHHHHHHHHhc
Q 038550 337 RIYGNVELGAWAAEHLFML 355 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~ 355 (423)
+..|++..|+++.+...+.
T Consensus 63 ~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred HhcccHHHHHHHHHHHHHH
Confidence 5556666666555555553
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.10 E-value=0.64 Score=38.34 Aligned_cols=193 Identities=18% Similarity=0.126 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhccCC-----CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-H
Q 038550 195 VANSILDFYTRSGRIDLANKIFDCLP-----VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT-A 268 (423)
Q Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~ 268 (423)
.+......+...+.+..+...+.... ......+......+...+++..+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 33444445555555555555544332 2233344444455555555666666666655533222 111112222 4
Q ss_pred HhccCcHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC--HhHHHHHHHHHHhcCChh
Q 038550 269 CSHGGLVEKGKKYFDEMQADSV--KPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD--ANIWGALLGACRIYGNVE 343 (423)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~ 343 (423)
+...|+++.+...+.+...... ......+......+...++.+.+...+.+. ...++ ...+..+...+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 5566666666666666643210 012222223333344556666666666555 22222 455555556666666666
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 344 LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 344 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.|...+.......|.....+..+...+...+.++++...+.+...
T Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666665444444444444455556666666655544
No 244
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.03 E-value=0.045 Score=45.34 Aligned_cols=98 Identities=12% Similarity=0.096 Sum_probs=77.0
Q ss_pred HHhhcccC--CcChhhHHHHHHHHHhC-----CChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCC------------
Q 038550 12 SYLFHNIA--EKNIVSWNAMVANFAQN-----RLELKALQLVREMPIHNEFPNSVTLTNVLPACARGH------------ 72 (423)
Q Consensus 12 ~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------------ 72 (423)
...|+.++ ++|-.+|-..+..+... +.++-....++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34455555 46788888888877654 567777778889999999999999999999875532
Q ss_pred ----CCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCh
Q 038550 73 ----FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL 109 (423)
Q Consensus 73 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 109 (423)
.-+-++.++++|...|+.||..+-..|++++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345788999999999999999999999998877653
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=95.98 E-value=0.18 Score=45.44 Aligned_cols=145 Identities=12% Similarity=0.069 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038550 239 EVDTAINLFEAMRED-GVGYD-PVSYIAILTACSHG---------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307 (423)
Q Consensus 239 ~~~~a~~~~~~m~~~-~~~p~-~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (423)
..+.|..+|.+.... ...|+ ...|..+..++... ....+|.++-++..+.+ +-|......+..++.-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 355677777777621 23444 34454444443221 23445666666666654 45666666666666777
Q ss_pred CChHHHHHHHhhC-CCCCCH-hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHH--HHHHHHHhcCChhHHHHHH
Q 038550 308 GLMEDAVKLIKNL-PVEPDA-NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWDEASKVR 383 (423)
Q Consensus 308 ~~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~~ 383 (423)
++++.|...|++. .+.||. .+|......+.-.|+.++|.+.++++.++.|....+-. ..+..|+..+ .++|+.+|
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 7788888888877 556643 34555555566778888888888888888877554422 3333555444 45666665
Q ss_pred HH
Q 038550 384 EL 385 (423)
Q Consensus 384 ~~ 385 (423)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 43
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=0.28 Score=40.85 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=46.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCC-ChhhHHHHHH
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVG--YDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKP-TEMHYACMVD 302 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~ 302 (423)
|+.-+..+ +.|++..|...|....+.... -....+-.|..++...|+++.|..+|..+.+. +-.| -+..+-.|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444433 444566666666555554211 12234455555555666666666555555554 1111 1234445555
Q ss_pred HHHhcCChHHHHHHHhhC
Q 038550 303 LLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~ 320 (423)
+..+.|+.++|...|+++
T Consensus 224 ~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 224 SLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 555556666665555554
No 247
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.96 E-value=2.4 Score=46.25 Aligned_cols=316 Identities=11% Similarity=-0.002 Sum_probs=173.7
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHHcCC--CCchHHHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChh
Q 038550 63 NVLPACARGHFLRPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCS 140 (423)
Q Consensus 63 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 140 (423)
.+..+-.+.+.+..|...++.-..... .-....|-.+...|...+++|...-+......+.. ...-|......|++.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s-l~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS-LYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc-HHHHHHHHHhhccHH
Confidence 334455567778888888777311100 11223445555689999998887777643222222 333455667789999
Q ss_pred hHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC
Q 038550 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220 (423)
Q Consensus 141 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 220 (423)
.|...|+++.+.+ ++...+++-++......+.+..+....+-......+-....++.-+.+--+.++++.......
T Consensus 1467 da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 9999999999875 455778888888887888887777755554443333333333444455577888887777665
Q ss_pred CCChhhHHHH--HHHHhcc--CCHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 221 VKDSASWNTL--ILGYGML--GEVDTAINLFEAMREDGVGY---------DPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 221 ~~~~~~~~~l--i~~~~~~--g~~~~a~~~~~~m~~~~~~p---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
..+..+|... ...+.+. .+.-.-...++-+++.-+.| -...|..++....-. +-....+...
T Consensus 1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~~~~~~l~- 1617 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELENSIEELK- 1617 (2382)
T ss_pred cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHHHHHHHhh-
Confidence 3444455443 2222222 22222222333333321111 011222222221111 0011111111
Q ss_pred cCCCCChhh------HHHHH---HHHHhcCChHHHHH-HHhh--CC--C-CCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 288 DSVKPTEMH------YACMV---DLLGRAGLMEDAVK-LIKN--LP--V-EPDANIWGALLGACRIYGNVELGAWAAEHL 352 (423)
Q Consensus 288 ~~~~~~~~~------~~~l~---~~~~~~~~~~~a~~-~~~~--~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 352 (423)
++.++..+ |..-+ +.+.+..++=-|.+ .+.. |. . ..-..+|....+.....|.++.|...+-.+
T Consensus 1618 -~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A 1696 (2382)
T KOG0890|consen 1618 -KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNA 1696 (2382)
T ss_pred -ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 22222211 11111 11222111111111 0111 11 1 123567888889999999999999988888
Q ss_pred HhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 353 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
.+..+ +.++...+..+...|+...|+.++++-.+...
T Consensus 1697 ~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1697 KESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 77773 56788888899999999999999999887654
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.95 Score=43.78 Aligned_cols=175 Identities=13% Similarity=0.050 Sum_probs=111.2
Q ss_pred HHHHHHHHHhcCChHHHHHHhchhcCCcchH----HHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH
Q 038550 96 TNALTDMYAKCGCLNLAQNVFNISFRDEVSY----NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171 (423)
Q Consensus 96 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 171 (423)
...-++.+.+...++-|..+-+...-+..+. .....-+.+.|++++|...|-+-... +.|+ .++.-+...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 3455667777788888888773333333333 33345556789999999888766542 2332 345566777
Q ss_pred hhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHH
Q 038550 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS-ASWNTLILGYGMLGEVDTAINLFEAM 250 (423)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m 250 (423)
.++.+-..+++.+.+.|...... -..|+.+|.+.++.++-.++.+...+... .-....+..+.+.+-.+.|..+-...
T Consensus 411 q~IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 78888888899999888755443 36789999999999998888877662211 11344555566666666665554443
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 038550 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285 (423)
Q Consensus 251 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 285 (423)
.. +......++ -..+++++|.+++..+
T Consensus 490 ~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred cc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 32 333334333 4567788888877664
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.85 E-value=0.86 Score=37.73 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=44.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGY---YILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+.+.|.+.|.+..|..-++++.+.-|....+ +..+..+|...|..++|...-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3467889999999999999999987665544 5567788999999999988755443
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.81 E-value=0.71 Score=40.09 Aligned_cols=51 Identities=10% Similarity=-0.076 Sum_probs=23.4
Q ss_pred HHHHHHhcCCHHHHHHHhccCC-------CC--ChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038550 199 ILDFYTRSGRIDLANKIFDCLP-------VK--DSASWNTLILGYGMLGEVDTAINLFEA 249 (423)
Q Consensus 199 l~~~~~~~~~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 249 (423)
+..++...+.++++++.|+... .+ ...++-.|...|.+..|+++|.-+..+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~k 187 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCK 187 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHh
Confidence 4444444455555555554322 11 123444555555555555555544444
No 251
>PRK11906 transcriptional regulator; Provisional
Probab=95.77 E-value=0.95 Score=41.01 Aligned_cols=140 Identities=14% Similarity=0.031 Sum_probs=79.8
Q ss_pred HHHHHHHhccCC---CCC---hhhHHHHHHHHhc---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 038550 209 IDLANKIFDCLP---VKD---SASWNTLILGYGM---------LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273 (423)
Q Consensus 209 ~~~A~~~~~~~~---~~~---~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 273 (423)
.+.|..+|.+.. +-| ...|..+..++.. .....+|.++.+...+.+. -|+.....+..++...+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc
Confidence 456777777665 333 3444444433322 1234456666666666543 36667777766667777
Q ss_pred cHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHhh-CCCCCCH---hHHHHHHHHHHhcCChhHHHHH
Q 038550 274 LVEKGKKYFDEMQADSVKPT-EMHYACMVDLLGRAGLMEDAVKLIKN-LPVEPDA---NIWGALLGACRIYGNVELGAWA 348 (423)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~ 348 (423)
+++.|...|++.... .|| ..+|......+.-+|+.++|.+.+++ +...|.. .+....+..|+.. ..+.|+++
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 788888888887775 343 34444444445567888888888877 4555532 2333333445443 45566666
Q ss_pred HHHH
Q 038550 349 AEHL 352 (423)
Q Consensus 349 ~~~~ 352 (423)
|-+-
T Consensus 430 ~~~~ 433 (458)
T PRK11906 430 YYKE 433 (458)
T ss_pred Hhhc
Confidence 5443
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.76 E-value=0.32 Score=42.13 Aligned_cols=222 Identities=10% Similarity=-0.017 Sum_probs=104.0
Q ss_pred HhcCCChhhHHHHHHHHHhcC--CCCchhhHHHHHHHHHhHhhHHhhhHHHH----HHHHh-ccCcchHHHHHHHHHHHh
Q 038550 133 YSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAIKQGKEIHG----VTIRK-HLHTHLFVANSILDFYTR 205 (423)
Q Consensus 133 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~----~~~~~-~~~~~~~~~~~l~~~~~~ 205 (423)
+....+.++|+..|.+-+.+- ..---.+|..+..+.++.|.++++...-- ...+. ....-...|..+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888887766531 11122366667777777777777655421 11111 001112223333334444
Q ss_pred cCCHHHHHHHhccCC------C--CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhcc
Q 038550 206 SGRIDLANKIFDCLP------V--KDSASWNTLILGYGMLGEVDTAINLFEAMREDG-----VGYDPVSYIAILTACSHG 272 (423)
Q Consensus 206 ~~~~~~A~~~~~~~~------~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~ 272 (423)
.-++.+++.+-..-. + .......++..++...+.++++++.|+...+.- .......+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 344444443332111 1 011223344555555566666666666654321 111223566666666666
Q ss_pred CcHHHHHHHHHHHHHc----CCCCChhhHHHH-----HHHHHhcCChHHHHHHHhhC-------CCCC-CHhHHHHHHHH
Q 038550 273 GLVEKGKKYFDEMQAD----SVKPTEMHYACM-----VDLLGRAGLMEDAVKLIKNL-------PVEP-DANIWGALLGA 335 (423)
Q Consensus 273 ~~~~~a~~~~~~~~~~----~~~~~~~~~~~l-----~~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~l~~~ 335 (423)
.++++|.-+..+..+. ++..-..-|..+ .-++...|..-+|.+.-++. |..+ -......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 6666666555554432 222112222222 22333445544444443332 3222 22334445556
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 038550 336 CRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 336 ~~~~~~~~~a~~~~~~~~~ 354 (423)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 6666666666665555544
No 253
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.048 Score=47.74 Aligned_cols=107 Identities=12% Similarity=0.022 Sum_probs=79.3
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHH
Q 038550 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345 (423)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 345 (423)
.+.|.+.|++..|..-|++.... +. |.+.-+.++.... . ..-..+++.|.-++.+.+++..|
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~-~----~~k~~~~lNlA~c~lKl~~~~~A 276 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKA-E----ALKLACHLNLAACYLKLKEYKEA 276 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHH-H----HHHHHHhhHHHHHHHhhhhHHHH
Confidence 46677888888888888776653 00 0111111211111 1 11234667788889999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 346 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+....++++.+|.|..+...-+.+|...|.++.|+..|+++.+..
T Consensus 277 i~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 277 IESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999998743
No 254
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.72 E-value=1.5 Score=39.48 Aligned_cols=345 Identities=10% Similarity=-0.025 Sum_probs=172.8
Q ss_pred ccCCcchhHHhhcccCC------------------cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCC----CCchhH
Q 038550 4 KSSRPAEASYLFHNIAE------------------KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF----PNSVTL 61 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~------------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~~~ 61 (423)
+.|.++.|...|..-.. +|...=+..++++...|++.++..++++|...=.+ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 45677777766644321 12223355677888999999999999998765333 678888
Q ss_pred HHHHHHhhc--------CCCCccHHHHHHHHH-------Hc------CCCCchHHHHHHHHHHHhcC--C---hHHHHHH
Q 038550 62 TNVLPACAR--------GHFLRPGKEIHARII-------RK------GLNFDLFLTNALTDMYAKCG--C---LNLAQNV 115 (423)
Q Consensus 62 ~~l~~~~~~--------~~~~~~a~~~~~~~~-------~~------~~~~~~~~~~~l~~~~~~~g--~---~~~a~~~ 115 (423)
+.++-.+.+ ....+-....++.++ .. .+.|.......++....-.. + +-.+.+.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 886555443 122222222222221 11 11222222333332221110 0 1111111
Q ss_pred hc--hhcC-CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC----chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhc
Q 038550 116 FN--ISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH----DVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188 (423)
Q Consensus 116 ~~--~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 188 (423)
++ -..| .......|...+.+ +.+++..+.+.+....+.+ =..+|..++....+.++...|.+.+..+....
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 10 0111 11222333333333 4555555555443322111 23477888888888888888888877665533
Q ss_pred cCcchH-----HHHHHHHHHHh----cCCHHHHHHHhccCCCCChhh---HHHHH---HHHhccCC-HHHHHHHHHHHHH
Q 038550 189 LHTHLF-----VANSILDFYTR----SGRIDLANKIFDCLPVKDSAS---WNTLI---LGYGMLGE-VDTAINLFEAMRE 252 (423)
Q Consensus 189 ~~~~~~-----~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~---~~~li---~~~~~~g~-~~~a~~~~~~m~~ 252 (423)
+..... .-..+-+..+. .-+..+-+.+|+.+...|+.. -..|+ .-+-+.|. -++|+++++.+.+
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 221110 00112222221 112233344444444333211 11122 23444555 7788888888876
Q ss_pred cCCCC-CHHHHH----HHHHHHhc---cCcHHHHHHHHHHHHHcCCCCChhh----HHHHHHH--HHhcCChHHHHHHHh
Q 038550 253 DGVGY-DPVSYI----AILTACSH---GGLVEKGKKYFDEMQADSVKPTEMH----YACMVDL--LGRAGLMEDAVKLIK 318 (423)
Q Consensus 253 ~~~~p-~~~~~~----~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~--~~~~~~~~~a~~~~~ 318 (423)
- .| |...-+ .+=.+|.. ...+.+-..+-+-+.+.|++|-... -|.|.++ +...|++.++.-.=.
T Consensus 409 f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 409 F--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred h--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4 22 222222 22222322 2344555555555566687765433 3333322 346788888765433
Q ss_pred hC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 319 NL-PVEPDANIWGALLGACRIYGNVELGAWAAEHL 352 (423)
Q Consensus 319 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 352 (423)
-+ .+.|++.+|..+.-.+....++++|..++..+
T Consensus 487 WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 487 WLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 22 56788888888888888888888888777653
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.48 E-value=0.036 Score=29.78 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
.+|..+...+...|++++|+..++++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35566666777777777777777777777665
No 256
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=95.42 E-value=2.8 Score=40.70 Aligned_cols=61 Identities=16% Similarity=-0.076 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCC-------ccHHHHHHHHHHc
Q 038550 26 WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL-------RPGKEIHARIIRK 87 (423)
Q Consensus 26 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~ 87 (423)
-=.+|-.|.+.|++++|.++.+..... .......+...+..+....+- +....-|++..+.
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 346777889999999999999655543 445566777888887765332 2444455555544
No 257
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.42 E-value=0.055 Score=28.99 Aligned_cols=31 Identities=29% Similarity=0.225 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 328 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
.|..+...+...|++++|++.++++.++.|.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3445556666666666666666666666665
No 258
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.41 E-value=2.3 Score=39.66 Aligned_cols=361 Identities=12% Similarity=0.033 Sum_probs=196.8
Q ss_pred hHHhhcccCC--cChh-hHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhh-cCCCCccHHHHHHHHHH
Q 038550 11 ASYLFHNIAE--KNIV-SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA-RGHFLRPGKEIHARIIR 86 (423)
Q Consensus 11 A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 86 (423)
+..+++.+.. |... -|......=.+.|..+.+.++|++..+ |++.+...|...+..+. ..|+.+.....|+..+.
T Consensus 64 ~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~ 142 (577)
T KOG1258|consen 64 LREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKS 142 (577)
T ss_pred HHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3444444442 5444 344555555667777888888887775 46666666666655543 35566666666666654
Q ss_pred c-CCC-CchHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHH---hcC------CChhhHHHHHHHH-----
Q 038550 87 K-GLN-FDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGY---SQT------SDCSESLSLFSEM----- 149 (423)
Q Consensus 87 ~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~---~~~------~~~~~a~~~~~~m----- 149 (423)
. |.. .....|...+.--..++++.....++ +...-....|+..-.-| ... ...+.+.++-...
T Consensus 143 ~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~ 222 (577)
T KOG1258|consen 143 YVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSK 222 (577)
T ss_pred hcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhh
Confidence 3 222 23445666666666666676666666 22211111111111111 111 1112222111111
Q ss_pred ---------------HhcCCCCchhh--HHHHHHHHHhH-------hhHHhhhHHHHHHHHhc-------cCcchHHHHH
Q 038550 150 ---------------RLLGMKHDVVS--FMGAISACANL-------AAIKQGKEIHGVTIRKH-------LHTHLFVANS 198 (423)
Q Consensus 150 ---------------~~~~~~~~~~~--~~~ll~~~~~~-------~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ 198 (423)
...+-+.+..+ .+.+...+... .......-.++.-.+.- ..++..+|..
T Consensus 223 ~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~ 302 (577)
T KOG1258|consen 223 ITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRY 302 (577)
T ss_pred cccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHH
Confidence 11111111111 11111111111 11111112222222211 1335667788
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 038550 199 ILDFYTRSGRIDLANKIFDCLPVK---DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275 (423)
Q Consensus 199 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 275 (423)
.+......|+.+.+.-+|++..-| =...|--.+.-....|+.+-|..++....+-.++-.+.+-..-..-+-..|++
T Consensus 303 yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~ 382 (577)
T KOG1258|consen 303 YLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNF 382 (577)
T ss_pred HhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccH
Confidence 888888999999999999988754 23445555555555699999988888776654432222221112224557899
Q ss_pred HHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHH---HHHhhC-CCCCCHhHHHHHHH-----HHHhcCChhHH
Q 038550 276 EKGKKYFDEMQADSVKPTEM-HYACMVDLLGRAGLMEDAV---KLIKNL-PVEPDANIWGALLG-----ACRIYGNVELG 345 (423)
Q Consensus 276 ~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~-~~~~~~~~~~~l~~-----~~~~~~~~~~a 345 (423)
+.|..+++.+... . |+.. .-..-+....+.|..+.+. +++... ...-+..+...+.- .+.-.++.+.|
T Consensus 383 ~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a 460 (577)
T KOG1258|consen 383 DDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLA 460 (577)
T ss_pred HHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999886 2 4422 2222344556788888887 555444 22333333333332 24556889999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 346 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
..++.++.+..|++...|..++......+
T Consensus 461 ~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 461 RIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 99999999999999999998888776655
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.36 E-value=0.82 Score=34.22 Aligned_cols=116 Identities=16% Similarity=0.062 Sum_probs=72.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGV--GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (423)
.....+.|++++|.+.|+.+...-. +-.......++.+|.+.++++.|...+++.++........-|...+.+++.-.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3444577888888888888877521 11345667778888888888888888888888743333345666666665544
Q ss_pred ChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 038550 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361 (423)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 361 (423)
..+..+.-+- +.+.| .+....|...|+++++.-|++..
T Consensus 97 ~~~~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 97 QDEGSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HhhhHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCChh
Confidence 4332222211 21222 22245777778888888887643
No 260
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.34 E-value=0.1 Score=44.01 Aligned_cols=59 Identities=22% Similarity=0.202 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 329 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+..++..+...|+.+.+...+++....+|-+...|..++.+|.+.|+...|+..|+++.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33444444455555555555555555555555555555555555555555555555443
No 261
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.16 E-value=0.87 Score=33.35 Aligned_cols=137 Identities=9% Similarity=0.108 Sum_probs=75.1
Q ss_pred hcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHH---HHHHHHHHhcCCHH
Q 038550 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA---NSILDFYTRSGRID 210 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~ 210 (423)
.-.|.+++..+++.+.... .+..-++-+|.-....-+-+- +++.+.+.|--.|.... ..++.+|...|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~y---vv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDY---VVETLDSIGKIFDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHH---HHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhH---HHHHHHHHhhhcCchhhcchHHHHHHHHHhcc--
Confidence 3456677777777776653 233344444433332223333 33333333333333222 234455554443
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 038550 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290 (423)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 290 (423)
+.......+..+...|+-++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 2334455677788888888888888887753 356888888888999999999999999999888875
Q ss_pred C
Q 038550 291 K 291 (423)
Q Consensus 291 ~ 291 (423)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 262
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.12 E-value=0.46 Score=42.45 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=103.2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLL 304 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (423)
+|-..+..-.+....+.|..+|-+..+.| +.++...+++++..++. |+...|..+|+.-... ++.+..--+..+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 45566777777788999999999999998 67788899999987665 7788899999876654 333333345566777
Q ss_pred HhcCChHHHHHHHhhC--CCCCC--HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 305 GRAGLMEDAVKLIKNL--PVEPD--ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 305 ~~~~~~~~a~~~~~~~--~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
.+.++-+.|..+|+.. .+..+ ..+|..+|.--..-|+...+..+-+++.+.-|..
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 8899999999999965 22223 6789999999899999999999999998888764
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.08 E-value=0.56 Score=34.22 Aligned_cols=88 Identities=15% Similarity=0.066 Sum_probs=62.7
Q ss_pred HHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCch---hhHHHHHHHHHhHhhH
Q 038550 102 MYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV---VSFMGAISACANLAAI 174 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~ 174 (423)
+++..|+++.|++.| ...+.....||.-..++.-.|+.++|++-+++..+..-.-.. ..|.--...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 467788888888888 455678888999999999999999999888888764322222 2333333445566777
Q ss_pred HhhhHHHHHHHHhcc
Q 038550 175 KQGKEIHGVTIRKHL 189 (423)
Q Consensus 175 ~~a~~~~~~~~~~~~ 189 (423)
+.|..-|+...+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888887777766653
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.00 E-value=4.7 Score=40.99 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=15.1
Q ss_pred HHHHHHHhcCC--ChhhHHHHHHHHHh
Q 038550 127 NILIVGYSQTS--DCSESLSLFSEMRL 151 (423)
Q Consensus 127 ~~l~~~~~~~~--~~~~a~~~~~~m~~ 151 (423)
-.+|.+|.+.+ .++.++..+.+...
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34566666666 56666666666554
No 265
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.95 E-value=1.2 Score=44.95 Aligned_cols=80 Identities=16% Similarity=0.083 Sum_probs=46.3
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCHhH--HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 038550 301 VDLLGRAGLMEDAVKLIKNLPVEPDANI--WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDE 378 (423)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 378 (423)
+.+|..+|++.+|+.+-.++...-+... -..|..-+...++.-+|-++..+..+. ....+..|++...|++
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-------~~~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-------PEEAVALLCKAKEWEE 1044 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-------HHHHHHHHhhHhHHHH
Confidence 4555555666666666555532223222 245666667777777777666665432 2233445777788888
Q ss_pred HHHHHHHHH
Q 038550 379 ASKVRELMK 387 (423)
Q Consensus 379 A~~~~~~m~ 387 (423)
|.++...-.
T Consensus 1045 Alrva~~~~ 1053 (1265)
T KOG1920|consen 1045 ALRVASKAK 1053 (1265)
T ss_pred HHHHHHhcc
Confidence 887765544
No 266
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.94 E-value=0.19 Score=38.61 Aligned_cols=134 Identities=11% Similarity=-0.032 Sum_probs=83.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCch-hHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchH-HHHHH
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV-TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF-LTNAL 99 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 99 (423)
+-..|..-+. +.+.+..++|+.-|..+.+.|..--+. ..-.......+.|+...|...|+++-.....|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4445555554 466778899999999988876431111 11122334678899999999999887654333322 11111
Q ss_pred --HHHHHhcCChHHHHHHhchhcCCcc-----hHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC
Q 038550 100 --TDMYAKCGCLNLAQNVFNISFRDEV-----SYNILIVGYSQTSDCSESLSLFSEMRLLGMKH 156 (423)
Q Consensus 100 --~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 156 (423)
.-.+...|.+++.....+-...+.. .-..|.-+-.+.|++.+|.+.|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 2235677888888777733332222 33456677788999999999999887654444
No 267
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.92 E-value=1.3 Score=34.28 Aligned_cols=134 Identities=13% Similarity=-0.004 Sum_probs=68.5
Q ss_pred HHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chhcC
Q 038550 43 LQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFR 121 (423)
Q Consensus 43 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~ 121 (423)
.+.++.+.+.+++|+...+..++..+.+.|.+.. +..++..++-+|.......+-.+ .+....+.++= +|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence 3445555566777777777777777777776443 33344444444444333222111 12223333332 44444
Q ss_pred CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHH
Q 038550 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186 (423)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 186 (423)
=...+..++..+...|++-+|++..+..... +......++.+..+.+|...-..+++....
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345666677777777777777777664221 112223445555555554444444444333
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.87 E-value=0.031 Score=32.31 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCcccc
Q 038550 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQ 401 (423)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 401 (423)
|.++..++..|.+.|++++|++++++..+.. |+....|..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~ 40 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRA 40 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHH
Confidence 4578899999999999999999999998864 555444443
No 269
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.86 E-value=0.86 Score=41.94 Aligned_cols=157 Identities=13% Similarity=-0.013 Sum_probs=96.9
Q ss_pred HHHHhcCCHHHHHHHhc--cCC-CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 038550 201 DFYTRSGRIDLANKIFD--CLP-VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277 (423)
Q Consensus 201 ~~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 277 (423)
....-.++++.+.++.+ .+. .-+....+.++.-+-+.|.++.|+.+.. |+.+- .....+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~r---FeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT---------DPDHR---FELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHH---HHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHHH---hHHHHhcCCHHH
Confidence 34455678888544443 111 1124457777777888888888887744 32221 233456788888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
|.++.++ ..+...|..|.....+.|+++-|++.|++.+ -+..|+-.|...|+.+.-.++.+.+...+-
T Consensus 337 A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 337 ALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 7765433 3466789999999999999999999999885 456666677888888877777776665443
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 358 QHCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 358 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
++....++.-.|+.++..+++.+-
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 333444556679998888887653
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.85 E-value=2.8 Score=37.53 Aligned_cols=147 Identities=10% Similarity=-0.015 Sum_probs=82.2
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC--hhhH
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY---DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT--EMHY 297 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 297 (423)
...+|..+...+.+.|.++.|...+..+...+... .+.....-+..+-..|+..+|...++......+..+ ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 45678888888889999999999888887754211 233444445566777888889888888877322211 1111
Q ss_pred HHHHHHHHhcCChHHHHHH-HhhCCCCCCHhHHHHHHHHHHhc------CChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038550 298 ACMVDLLGRAGLMEDAVKL-IKNLPVEPDANIWGALLGACRIY------GNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370 (423)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 370 (423)
..+...+.. ..+..... ........-...+..+....... ++.+++...|+.+.+..|.....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111100 00000000 00000000112233333333333 7888899999999999988888887777665
Q ss_pred H
Q 038550 371 A 371 (423)
Q Consensus 371 ~ 371 (423)
.
T Consensus 303 ~ 303 (352)
T PF02259_consen 303 D 303 (352)
T ss_pred H
Confidence 4
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.84 E-value=1 Score=41.07 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 330 GALLGACRIYGNVELGAWAAEHLFMLKPQ--HCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 330 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
..|..++.+.|+.++|++.++++.+..|. +..+...|+.++...+++.++..++.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33444555556666666666665554432 2334555556666666666666555554
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.45 Score=40.77 Aligned_cols=116 Identities=11% Similarity=0.034 Sum_probs=93.0
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC--CCCCCHh----HHHHHHHHHHhcCChh
Q 038550 270 SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDAN----IWGALLGACRIYGNVE 343 (423)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~----~~~~l~~~~~~~~~~~ 343 (423)
-..|++.+|-..++++.+. .|.|...+...=.+|.-.|+.+.-...++++ ...||.. ....+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4567888888889998876 5777777877788899999988888888887 3355543 3333445567889999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 344 LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 344 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
+|++..+++.+++|.+.-+..+.+..+.-.|++.++.+.+.+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999999888888999999999999999887653
No 273
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.76 E-value=0.13 Score=40.43 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=78.8
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-HhHHHHHHHHHHhc
Q 038550 267 TACSHGGLVEKGKKYFDEMQADSVKPTE-----MHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-ANIWGALLGACRIY 339 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~ 339 (423)
.-+...|++++|..-|.+.+.. +++.. ..|..-..++.+.+.++.|++--.+. .+.|. ......-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 4478899999999999999886 33332 23333345667888888888766555 45552 23333334678888
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH--HHHHHHHHHhcc
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDE--ASKVRELMKSRE 390 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~--A~~~~~~m~~~~ 390 (423)
..+++|+.-|.++.+.+|....+....++.=-....-.+ -.+++.+++..|
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999876655554443222222222 223455555555
No 274
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.73 E-value=3.7 Score=38.40 Aligned_cols=154 Identities=15% Similarity=0.093 Sum_probs=79.4
Q ss_pred HHHHHHHhCCChHHHHHHHhhchhCC-CCCC-----chhHHHHHHHhhc----CCCCccHHHHHHHHHHcCCCCchHHHH
Q 038550 28 AMVANFAQNRLELKALQLVREMPIHN-EFPN-----SVTLTNVLPACAR----GHFLRPGKEIHARIIRKGLNFDLFLTN 97 (423)
Q Consensus 28 ~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (423)
.+++...=.|+-+.+++.+.+..+.+ +.-. .-.|+.++..++. ..+.+.+.+++..+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 34444555677777777776654432 1100 0123333333322 33456667777777655 45544443
Q ss_pred HH-HHHHHhcCChHHHHHHhchhcC--------CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 038550 98 AL-TDMYAKCGCLNLAQNVFNISFR--------DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC 168 (423)
Q Consensus 98 ~l-~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 168 (423)
.. ...+...|++++|++.|+.... ....+-.+..++.-..+|++|...|..+.+.. ..+..+|..+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 22 3445566777777777732111 12234445556666777777777777776643 34444554444333
Q ss_pred -HhHhhH-------HhhhHHHHHH
Q 038550 169 -ANLAAI-------KQGKEIHGVT 184 (423)
Q Consensus 169 -~~~~~~-------~~a~~~~~~~ 184 (423)
...++. ++|..++.++
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHH
Confidence 234444 5555555544
No 275
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.69 E-value=2.1 Score=35.49 Aligned_cols=72 Identities=10% Similarity=-0.112 Sum_probs=40.8
Q ss_pred HHhcCCChhhHHHHHHHHHhcC--CCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHH
Q 038550 132 GYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203 (423)
Q Consensus 132 ~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (423)
.-.+.|++++|.+.|+.+..+. -+-...+...++.++.+.++++.|....++..+..+.....-|..-|.++
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 3345677777777777776542 11123344455556666777777777777666655444444444444443
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.61 E-value=1.2 Score=34.36 Aligned_cols=129 Identities=20% Similarity=0.193 Sum_probs=67.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChh-hHHHHHH
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV-SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HYACMVD 302 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~ 302 (423)
..|..-++ +++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-.. -...|-.
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 355667777777777777766442221 12222333556677777777777766552222211 1111211
Q ss_pred --HHHhcCChHHHHHHHhhCC--CCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 303 --LLGRAGLMEDAVKLIKNLP--VEP-DANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 303 --~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
.+...|.++......+-+. -.| -...-..|.-+-.+.|++..|.+.|.++..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2345666666666665551 112 223344455555666666666666666655
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.60 E-value=0.061 Score=29.45 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 363 YILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+..|+.+|.+.|++++|++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566677777777777777777644
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=2.8 Score=40.82 Aligned_cols=178 Identities=12% Similarity=0.095 Sum_probs=81.7
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc--hHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhcc
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTH--LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 237 (423)
+...-+..+.+...++.|..+-+. .+..++ ........+.+.+.|++++|...|-+-..--.. ..+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCH
Confidence 344445555555555555554332 222221 112222334445566666666555433211000 1233444444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038550 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317 (423)
Q Consensus 238 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (423)
.+...-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+..- .|.. ..-....+..+.+.+-.++|..+-
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 5555555566666666654 34444556666666666665555544433 2211 111233444455555555555554
Q ss_pred hhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHH
Q 038550 318 KNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351 (423)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 351 (423)
.+.+. +......++ -..+++++|++.++.
T Consensus 487 ~k~~~--he~vl~ill---e~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 487 TKFKK--HEWVLDILL---EDLHNYEEALRYISS 515 (933)
T ss_pred HHhcc--CHHHHHHHH---HHhcCHHHHHHHHhc
Confidence 44432 233333333 345666666665544
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.40 E-value=3 Score=35.94 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=11.0
Q ss_pred hcCCCCccHHHHHHHHHH
Q 038550 69 ARGHFLRPGKEIHARIIR 86 (423)
Q Consensus 69 ~~~~~~~~a~~~~~~~~~ 86 (423)
.+.|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 345666666666666654
No 280
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=2.7 Score=34.59 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=24.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHc-CC--CCChhhHHHHHHHHHhcCChHHHHHHH
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQAD-SV--KPTEMHYACMVDLLGRAGLMEDAVKLI 317 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (423)
|...|-.+....++..|...++.-.+. ++ +-+..+...|+.+| ..|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 334444444455555555555553332 11 12334444444443 244555444443
No 281
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.00 E-value=2.9 Score=34.26 Aligned_cols=125 Identities=18% Similarity=0.133 Sum_probs=84.2
Q ss_pred HHhccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCC
Q 038550 233 GYGMLGEVDTAINLFEAMREDGV--GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP-TEMHYACMVDLLGRAGL 309 (423)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 309 (423)
.+...|+++.+...+.+...... ......+......+...++.+.+...+....... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56677777888777777754211 1123334444444666778888888888887753 23 35667777778888888
Q ss_pred hHHHHHHHhhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 310 MEDAVKLIKNL-PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 310 ~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888888776 44444 444555555555677789999999998888876
No 282
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.97 E-value=5.5 Score=37.35 Aligned_cols=336 Identities=9% Similarity=0.008 Sum_probs=163.4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCch-hHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHH
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV-TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (423)
+-..|..+|.---.....+.+..++..++.. .|-.. -|......=.+.|..+.+.++|++.+.. ++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3445666665555555556666666666643 24443 3444444445677788888888877643 455555555555
Q ss_pred HHHH-hcCChHHHHHHhch-------hcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH-
Q 038550 101 DMYA-KCGCLNLAQNVFNI-------SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL- 171 (423)
Q Consensus 101 ~~~~-~~g~~~~a~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~- 171 (423)
.-+. ..|+.+.....|+. .-.+...|...|.--...+++.....+|++.++. |. ..|+..-..+.+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHH
Confidence 4433 33555555555521 1224556777777777777777888888777752 21 2222222222111
Q ss_pred --------hhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcC-CHHHHHHHhccCCCCCh---hhHHHH-------HH
Q 038550 172 --------AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG-RIDLANKIFDCLPVKDS---ASWNTL-------IL 232 (423)
Q Consensus 172 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~---~~~~~l-------i~ 232 (423)
-..+++.++-...... ..-...+ ..+.-....+....|.. ...+.+ -.
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~ 263 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEK 263 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHH
Confidence 1112222211111110 0000000 11111111111111110 001111 11
Q ss_pred HHhccCCHHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038550 233 GYGMLGEVDTAINLFEAMRED---GVGY----DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305 (423)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~---~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (423)
.+............++.-... .++| +..+|...+.--...|+.+.+.-+|+...-- +..-...|-..+.-..
T Consensus 264 ~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~ 342 (577)
T KOG1258|consen 264 VYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWME 342 (577)
T ss_pred HHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHH
Confidence 122222222333333332221 1222 3356666676677777777777777776532 1122334444444445
Q ss_pred hcCChHHHHHHHhhC-----CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 038550 306 RAGLMEDAVKLIKNL-----PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 380 (423)
..|+.+-|..++.+. +..|....+.+.+ .-..|++..|..+++...+.-|.....-..-+....+.|..+.+.
T Consensus 343 ~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 343 SSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 557777777666654 2233333333322 335677888888888877766665555555555666777777776
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.93 E-value=0.12 Score=28.30 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 328 IWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 328 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
+|..|...|.+.|++++|+.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466788888888888888888888554
No 284
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.90 E-value=2.4 Score=32.95 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh
Q 038550 79 EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 116 (423)
++++.+.+.+++|+...+..+++.+.+.|++.....++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45556667777888888888888877777765554444
No 285
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.86 E-value=5.2 Score=36.72 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=42.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038550 228 NTLILGYGMLGEVDTAINLFEAMREDGVG-YDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 228 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (423)
..+..++-+.|+.++|++.+++|.+.... -.......|+.++...+.+.++..++.+.-+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 44556666778888888888888754222 12346677788888888888888888776543
No 286
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.82 E-value=2.9 Score=33.72 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=86.9
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
-+.+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++..|.+-+...-... +.| .|.+|--
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D-~~D--PfR~LWL 173 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDD-PND--PFRSLWL 173 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcC-CCC--hHHHHHH
Confidence 34677777777788888888888888887764332222222222 2445577777776666655542 111 1222221
Q ss_pred HHH-hcCChHHHHHHH-hhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhc
Q 038550 303 LLG-RAGLMEDAVKLI-KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-------CGYYILLSNMYAEA 373 (423)
Q Consensus 303 ~~~-~~~~~~~a~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 373 (423)
-+. ..-++.+|..-+ ++.. ..|..-|...|-.|.-..-.+ ..+++++.....++ ..+|.-++..+...
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 111 233555665433 3332 334444444443332211111 12333333322222 34677778888888
Q ss_pred CChhHHHHHHHHHHhccc
Q 038550 374 GKWDEASKVRELMKSREA 391 (423)
Q Consensus 374 g~~~~A~~~~~~m~~~~~ 391 (423)
|+.++|..+|+-....++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999988887766544
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.81 E-value=0.68 Score=35.37 Aligned_cols=98 Identities=15% Similarity=0.042 Sum_probs=63.6
Q ss_pred hhHHHHHHHH---HhcCChHHHHHHHhhC-CCCCCHhHHHHH-HHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 038550 295 MHYACMVDLL---GRAGLMEDAVKLIKNL-PVEPDANIWGAL-LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNM 369 (423)
Q Consensus 295 ~~~~~l~~~~---~~~~~~~~a~~~~~~~-~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 369 (423)
.+.+.|+..+ .+.++.+++..++..+ -.+|.......+ ...+...|++.+|..+++.+.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3445555444 5678999999999888 355644433332 2346789999999999999888888777666666666
Q ss_pred HHhcCChhHHHHHHHHHHhccccC
Q 038550 370 YAEAGKWDEASKVRELMKSREAKK 393 (423)
Q Consensus 370 ~~~~g~~~~A~~~~~~m~~~~~~~ 393 (423)
+...|+.+ =..+-.++.+.+..|
T Consensus 88 L~~~~D~~-Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 88 LYALGDPS-WRRYADEVLESGADP 110 (160)
T ss_pred HHHcCChH-HHHHHHHHHhcCCCh
Confidence 66666542 222334455555433
No 288
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=3.1 Score=33.97 Aligned_cols=136 Identities=13% Similarity=0.134 Sum_probs=68.0
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHc--CCCCChhhH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMRED----G-VGYDPVSYIAILTACSHG-GLVEKGKKYFDEMQAD--SVKPTEMHY 297 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~--~~~~~~~~~ 297 (423)
+|.....+| +.+++.+|...++...+. | ++--...+..+...|... .++++|+..|+..-+- |-..+...-
T Consensus 76 ~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 444444444 445888888887766542 1 111111223344445443 6677777777776654 322222222
Q ss_pred HHHH---HHHHhcCChHHHHHHHhhCC---CCCCHhHHHH---HHH-H--HHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 298 ACMV---DLLGRAGLMEDAVKLIKNLP---VEPDANIWGA---LLG-A--CRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 298 ~~l~---~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~---l~~-~--~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
-.++ ..-+..+++.+|+++|++.. ...+..-|.. ++. + +.-..|.-.+...+++..+..|.-..+
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 2222 22345677778888877661 1111111111 111 1 122356666777777777777764433
No 289
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.76 E-value=0.61 Score=35.00 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=51.8
Q ss_pred hhHHHHHHHH---HhcCChHHHHHHHhhC-CCCCC---HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 295 MHYACMVDLL---GRAGLMEDAVKLIKNL-PVEPD---ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 295 ~~~~~l~~~~---~~~~~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
.+.+.|+... ...++++++..+++.| -+.|+ ..++... .+...|++++|.++++.+.+..+..+..-..++
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 3444454443 3578888888888887 34453 3444443 356888999999999998887766555555555
Q ss_pred HHHHhcCCh
Q 038550 368 NMYAEAGKW 376 (423)
Q Consensus 368 ~~~~~~g~~ 376 (423)
.++.-.|+.
T Consensus 86 ~CL~al~Dp 94 (153)
T TIGR02561 86 LCLNAKGDA 94 (153)
T ss_pred HHHHhcCCh
Confidence 555555654
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.46 E-value=0.85 Score=38.67 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=29.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34444444555555555555555554432 12444555555555555555555555544443
No 291
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.31 E-value=0.19 Score=26.80 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 328 IWGALLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 328 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
+|..+...|...|++++|...|+++.+..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555566666666666666666666555
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.25 E-value=5.9 Score=35.42 Aligned_cols=68 Identities=21% Similarity=0.230 Sum_probs=56.3
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKP----QHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
....+|..+...+.+.|.++.|...+.++....+ ..+.....-+..+...|+.++|+..++.......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3566888999999999999999999999988652 2466677778889999999999999998887433
No 293
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.24 E-value=3.4 Score=32.72 Aligned_cols=128 Identities=10% Similarity=-0.014 Sum_probs=69.0
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhccCcHHHHHHHHHHHHHcCCCCC----hhhHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVKPT----EMHYAC 299 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ 299 (423)
.|..++.... .+.+ +.....+++.....+..-.++. .+...+...+++++|...++..... +-| ...--.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lR 131 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHH
Confidence 3444444432 3333 4445555555542121111222 2233466778888888877766643 111 112223
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 300 MVDLLGRAGLMEDAVKLIKNLPVE-PDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
|.+.....|.+++|+..++...-. -.......-...+...|+-++|...|+++.+..+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 445666778888888887765311 1222233334667778888888888888877763
No 294
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.14 E-value=3.7 Score=33.58 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=18.6
Q ss_pred HHhHhhHHhhhHHHHHHHHhccCcchH
Q 038550 168 CANLAAIKQGKEIHGVTIRKHLHTHLF 194 (423)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ 194 (423)
....+++.+|+.+|+++....+..+..
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 356678888888888887766554433
No 295
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.95 E-value=0.13 Score=39.18 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=49.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038550 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309 (423)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (423)
++..+.+.+.+.....+++.+...+...+....+.++..|++.+..++...+++... + .-...+++.+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcch
Confidence 345555666777777777777765545566777777777777766666665555111 1 222344555566666
Q ss_pred hHHHHHHHhhCC
Q 038550 310 MEDAVKLIKNLP 321 (423)
Q Consensus 310 ~~~a~~~~~~~~ 321 (423)
+++|.-++.+++
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 666666666654
No 296
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.86 E-value=10 Score=37.11 Aligned_cols=186 Identities=8% Similarity=-0.126 Sum_probs=92.4
Q ss_pred HHHHHHHhccCCCC--ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 209 IDLANKIFDCLPVK--DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 209 ~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
.+.|...++..... +.......+......++++.+...+..|.... .-...-.-.+..++...|+.++|..+|+.+.
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33444444443321 33333333334445566666666655554321 1123333444455455566666666655542
Q ss_pred Hc------------CCCCC--------h------hhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcC
Q 038550 287 AD------------SVKPT--------E------MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340 (423)
Q Consensus 287 ~~------------~~~~~--------~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~ 340 (423)
.. |.+++ . ..-..-+..+...|....|...+..+....+......+.......|
T Consensus 374 ~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g 453 (644)
T PRK11619 374 QQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQ 453 (644)
T ss_pred cCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Confidence 21 11100 0 0011123445566777788777766633355556666666667788
Q ss_pred ChhHHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCC
Q 038550 341 NVELGAWAAEHLFMLK---PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395 (423)
Q Consensus 341 ~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 395 (423)
..+.++.........+ -.-|..|...+..+.+.-.++.++-.---..+.+..|+.
T Consensus 454 ~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 454 WWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred CHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC
Confidence 8888777665543321 112334555566666666666665433333456666654
No 297
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.68 E-value=6.2 Score=34.22 Aligned_cols=133 Identities=16% Similarity=0.248 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh------HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHH
Q 038550 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACAN------LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212 (423)
Q Consensus 139 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 212 (423)
++..+.+++.|++.|+.-+..+|.+....... ......+..+++.|.+..+-.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 45667888999999988888777554333322 1234556666666666442111
Q ss_pred HHHhccCCCCChhhHHHHHHHHhccCC----HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCc--HHHHHHHHHH
Q 038550 213 NKIFDCLPVKDSASWNTLILGYGMLGE----VDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGL--VEKGKKYFDE 284 (423)
Q Consensus 213 ~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~~ 284 (423)
.++...+..++.. ..++ .+.+..+|+.+.+.|+..+. .....++..+..... ..++.++++.
T Consensus 138 --------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 138 --------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred --------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1122222223222 2222 35667777777777766543 233444433332222 4477888888
Q ss_pred HHHcCCCCChhhHHHHH
Q 038550 285 MQADSVKPTEMHYACMV 301 (423)
Q Consensus 285 ~~~~~~~~~~~~~~~l~ 301 (423)
+.+.|+++....|..+.
T Consensus 208 l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 208 LKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHcCCccccccccHHH
Confidence 88888888777766553
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.53 E-value=1.9 Score=34.10 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=42.7
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCch--hhHHHHHHHHHhHhhHHhhhHHHHHHHH
Q 038550 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV--VSFMGAISACANLAAIKQGKEIHGVTIR 186 (423)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 186 (423)
.+..+...|++.|+.+.|++.|.++.+....+.. ..+..+|....-.+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4666777888888888888888888776544432 3455666666777777777777666554
No 299
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.45 E-value=3.6 Score=30.97 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH
Q 038550 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171 (423)
Q Consensus 127 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 171 (423)
..++..+...+........++.+...+ ..+...++.++..+++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 345555555566666666666666554 34555556666666544
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.43 E-value=3.7 Score=32.47 Aligned_cols=95 Identities=11% Similarity=0.090 Sum_probs=51.2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHc---CCCCChhhHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQAD---SVKPTEMHYACM 300 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l 300 (423)
.+..+...|++.|+.+.|.+.|.++.+....+.. ..+..+|......+++..+...+.++... |-.++...-...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3555666666777777777777776665443332 24555566666666777666666665544 111111111111
Q ss_pred HH--HHHhcCChHHHHHHHhhC
Q 038550 301 VD--LLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 301 ~~--~~~~~~~~~~a~~~~~~~ 320 (423)
.. .+...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 11 123456777777766655
No 301
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.15 E-value=7.1 Score=33.64 Aligned_cols=158 Identities=14% Similarity=0.050 Sum_probs=74.8
Q ss_pred hHHHHHHHHhccCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 226 SWNTLILGYGMLGEVD---TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
+...++.+|...+..+ +|..+++.+...... .+..+..-+..+.+.++.+.+.+.+.+|... +......+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 4555666666665543 445555555433211 2344545556666677777777777777775 2212233444444
Q ss_pred HH---HhcCChHHHHHHHhhC---CCCCCHh-HHHHHH--HHH--HhcCC------hhHHHHHHHHHHhc--CCCCcchH
Q 038550 303 LL---GRAGLMEDAVKLIKNL---PVEPDAN-IWGALL--GAC--RIYGN------VELGAWAAEHLFML--KPQHCGYY 363 (423)
Q Consensus 303 ~~---~~~~~~~~a~~~~~~~---~~~~~~~-~~~~l~--~~~--~~~~~------~~~a~~~~~~~~~~--~p~~~~~~ 363 (423)
.+ .... ...|...+..+ .+.|... ....++ ..+ ...++ ++....++..+.+. .|-++.+-
T Consensus 164 ~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 3322 33444444433 2333322 111111 111 11111 33333444433221 23333322
Q ss_pred H-------HHHHHHHhcCChhHHHHHHHHH
Q 038550 364 I-------LLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 364 ~-------~l~~~~~~~g~~~~A~~~~~~m 386 (423)
. .-+..+.+.++|++|.+.|+-.
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 1 2234567889999999988743
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.05 E-value=0.31 Score=25.91 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 361 GYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
..+..++..+...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999987643
No 303
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.91 E-value=13 Score=36.19 Aligned_cols=168 Identities=14% Similarity=0.054 Sum_probs=97.0
Q ss_pred HHHHHhCCChHHHHHHHhhchhCCCCC---CchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 038550 30 VANFAQNRLELKALQLVREMPIHNEFP---NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC 106 (423)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 106 (423)
++.+.+.+.+++|++..+.... ..| -.......+..+.-.|+++.|....-.|. ..+..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccc
Confidence 5567788889999988776543 233 23456677777888888888888887776 34566676677777777
Q ss_pred CChHHHHHHh-chhc-CCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHH
Q 038550 107 GCLNLAQNVF-NISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184 (423)
Q Consensus 107 g~~~~a~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 184 (423)
++......++ ...+ -+...|..++..+.. .+. .-|.+..+. .+++...-..++++. ..++.+
T Consensus 437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~-Wp~~Lys~l~iisa~--~~q~~q-------- 500 (846)
T KOG2066|consen 437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE-WPGHLYSVLTIISAT--EPQIKQ-------- 500 (846)
T ss_pred cccchhhccCCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh-CChhhhhhhHHHhhc--chHHHh--------
Confidence 7776666665 2222 355677777777765 222 223333321 122222222222211 111111
Q ss_pred HHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCC
Q 038550 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223 (423)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 223 (423)
.- -+......|+..|...+++++|..++-....++
T Consensus 501 ---~S-e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 501 ---NS-ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred ---hc-cchhHHHHHHHHHHHccChHHHHHHHHhccChH
Confidence 00 111222347778888888888888887776543
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.66 E-value=0.48 Score=26.60 Aligned_cols=27 Identities=22% Similarity=0.100 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 328 IWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 328 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
+++.|...|...|++++|..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 444455555555555555555555443
No 305
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.60 E-value=0.37 Score=25.67 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 361 GYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.+|..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468889999999999999999999988743
No 306
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.55 E-value=0.28 Score=26.39 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=13.3
Q ss_pred CCchHHHHHHHHHHHhcCChHHHH
Q 038550 90 NFDLFLTNALTDMYAKCGCLNLAQ 113 (423)
Q Consensus 90 ~~~~~~~~~l~~~~~~~g~~~~a~ 113 (423)
|-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334555555555565556555553
No 307
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.39 E-value=5 Score=34.82 Aligned_cols=134 Identities=9% Similarity=0.023 Sum_probs=76.9
Q ss_pred hHHHHHHHhhchhCCCCCCchhHHHHHHHhhc--CC----CCccHHHHHHHHHHcCC---CCchHHHHHHHHHHHhcCCh
Q 038550 39 ELKALQLVREMPIHNEFPNSVTLTNVLPACAR--GH----FLRPGKEIHARIIRKGL---NFDLFLTNALTDMYAKCGCL 109 (423)
Q Consensus 39 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 109 (423)
+++.+.+++.|.+.|.+-+..+|-+....... .. ....+..+|+.|.+... .++..++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677788889999988777766654333332 22 25577888888887642 1333344444322 22222
Q ss_pred HHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh--hHHHHHHHHHhH--hhHHhhhHHHHHHH
Q 038550 110 NLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV--SFMGAISACANL--AAIKQGKEIHGVTI 185 (423)
Q Consensus 110 ~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~--~~~~~a~~~~~~~~ 185 (423)
+.- .+.+...|+.+.+.|+..+.. ....++..+... .....+..+++.+.
T Consensus 156 e~l--------------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~ 209 (297)
T PF13170_consen 156 EEL--------------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK 209 (297)
T ss_pred HHH--------------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 211 255677777777777655432 223333322221 22557778888888
Q ss_pred HhccCcchHHHHHHH
Q 038550 186 RKHLHTHLFVANSIL 200 (423)
Q Consensus 186 ~~~~~~~~~~~~~l~ 200 (423)
+.|+++....|..+.
T Consensus 210 ~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 210 KNGVKIKYMHYPTLG 224 (297)
T ss_pred HcCCccccccccHHH
Confidence 888887776665443
No 308
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.33 E-value=2.9 Score=35.77 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=68.6
Q ss_pred hccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-C--------ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 038550 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-K--------DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257 (423)
Q Consensus 187 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 257 (423)
.|......+...++..-....+++++...+-++.. + ...+|-.++.. =++++++.++..=++.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhcccc
Confidence 34444455555566666666777887777765542 1 23333333332 36778888888888889999
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (423)
|..++..++..+.+.+++..|..+...|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999888888877765
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.13 E-value=16 Score=35.66 Aligned_cols=141 Identities=8% Similarity=-0.038 Sum_probs=83.7
Q ss_pred cccCCcchhHHhhcccCC--c---ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccH
Q 038550 3 AKSSRPAEASYLFHNIAE--K---NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPG 77 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~--~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 77 (423)
.+.+.+++|+...+.... + --..+...|..+.-.|+++.|-...-.|... +..-|...+..++..+.....
T Consensus 367 l~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchh
Confidence 456778889888877654 2 3446788889999999999999988888754 555666666666665554433
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHH---h------------------chhcCCcchHHHHHHHHhcC
Q 038550 78 KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV---F------------------NISFRDEVSYNILIVGYSQT 136 (423)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~---~------------------~~~~~~~~~~~~l~~~~~~~ 136 (423)
..+ +.......++..|..++..+.. .+...-.++ + +....+...-..|+..|...
T Consensus 443 a~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d 518 (846)
T KOG2066|consen 443 APY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYD 518 (846)
T ss_pred hcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHc
Confidence 222 1111112344556665555544 221111111 1 00111223344577888888
Q ss_pred CChhhHHHHHHHHHh
Q 038550 137 SDCSESLSLFSEMRL 151 (423)
Q Consensus 137 ~~~~~a~~~~~~m~~ 151 (423)
+++..|+.++-..++
T Consensus 519 ~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 519 NKYEKALPIYLKLQD 533 (846)
T ss_pred cChHHHHHHHHhccC
Confidence 888888888776653
No 310
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.01 E-value=13 Score=34.41 Aligned_cols=176 Identities=9% Similarity=0.027 Sum_probs=121.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhccCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038550 192 HLFVANSILDFYTRSGRIDLANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269 (423)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 269 (423)
+....-+++..+..+..+.-++.+..+|. ..+-..|..++++|..+ ..++-..+|+++.+..+ +......-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHH
Confidence 44444567888888888888888877776 45677888999999888 66788889998888755 334444444444
Q ss_pred hccCcHHHHHHHHHHHHHcCCCC--C---hhhHHHHHHHHHhcCChHHHHHHHhhC----CCCCCHhHHHHHHHHHHhcC
Q 038550 270 SHGGLVEKGKKYFDEMQADSVKP--T---EMHYACMVDLLGRAGLMEDAVKLIKNL----PVEPDANIWGALLGACRIYG 340 (423)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~~~ 340 (423)
...++...+..+|.++..+-++. + ...|..|...- ..+.+....+..++ +...-...+..+-.-|....
T Consensus 142 yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 44588888888998888763221 1 22454444321 45667777776665 33444556666667888999
Q ss_pred ChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 341 NVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 341 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
++.+|++++..+.+.+..+.-+...++.-+..
T Consensus 220 N~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 220 NWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred CHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 99999999999999887777666666655443
No 311
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.93 E-value=0.57 Score=24.58 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=11.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCC
Q 038550 334 GACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 334 ~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
.++.+.|++++|...|+++.+..|
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHccCHHHHHHHHHHHHHHCc
Confidence 334444444444444444444444
No 312
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.93 E-value=2.2 Score=32.65 Aligned_cols=112 Identities=16% Similarity=0.084 Sum_probs=64.7
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHHHHHHHhcCChh
Q 038550 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC-MVDLLGRAGLMEDAVKLIKNLP-VEPDANIWGALLGACRIYGNVE 343 (423)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 343 (423)
+..-...++.+++..++..+.-. .|....... -...+...|++.+|..+|+++. -.|....-..|+..|....+-.
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33456778999999999999875 454333222 2344678999999999999993 3444444455555554443333
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 038550 344 LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 344 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 381 (423)
.=...-+++.+.++ ++.+... +..+........|..
T Consensus 95 ~Wr~~A~evle~~~-d~~a~~L-v~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 95 SWRRYADEVLESGA-DPDARAL-VRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHHhcCC-ChHHHHH-HHHHHHhccccchhh
Confidence 33344444555444 3333333 344444444444443
No 313
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.78 E-value=0.37 Score=23.95 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 038550 362 YYILLSNMYAEAGKWDEASKVRE 384 (423)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~ 384 (423)
+...++..+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566777777777777777664
No 314
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.66 E-value=0.36 Score=36.69 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=58.0
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhH
Q 038550 63 NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSES 142 (423)
Q Consensus 63 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 142 (423)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--cCHHHHHHHHHhcchHHHH
Confidence 45677778888888889999988777666788889999999999888888888842211 2233455555666666666
Q ss_pred HHHHHHH
Q 038550 143 LSLFSEM 149 (423)
Q Consensus 143 ~~~~~~m 149 (423)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555543
No 315
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.33 E-value=0.73 Score=39.66 Aligned_cols=98 Identities=10% Similarity=-0.002 Sum_probs=68.1
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CC-CCCHhHHHHHHHHHHhcCChhH
Q 038550 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PV-EPDANIWGALLGACRIYGNVEL 344 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~ 344 (423)
+-|.++|++++|+..|....... +.|.+++..-..+|.+...+..|+.-.... .+ +.-...|..-..+-...|+..+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 46899999999999999887752 337888888888999988888776554433 11 1112234444444445677888
Q ss_pred HHHHHHHHHhcCCCCcchHHH
Q 038550 345 GAWAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 345 a~~~~~~~~~~~p~~~~~~~~ 365 (423)
|.+-++.++++.|.+...-..
T Consensus 184 AKkD~E~vL~LEP~~~ELkK~ 204 (536)
T KOG4648|consen 184 AKKDCETVLALEPKNIELKKS 204 (536)
T ss_pred HHHhHHHHHhhCcccHHHHHH
Confidence 888899999999986544333
No 316
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.32 E-value=11 Score=36.35 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=80.2
Q ss_pred hccCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 235 GMLGEVDTAINLFEAMRE-------DGVGYDPVSYIAILTACSHGG-----LVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
....+.+.|+.+|+.+.+ .| .+.....+..+|.+.. +.+.|..++....+.| .|+.......+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 345677777777777655 44 2234445555555532 5666777777777766 344443332222
Q ss_pred HHHh-cCChHHHHHHHhhCCCCCCHhHHHHHHHHH----HhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 038550 303 LLGR-AGLMEDAVKLIKNLPVEPDANIWGALLGAC----RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWD 377 (423)
Q Consensus 303 ~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 377 (423)
.... ..+...|.++|......-....+-.+...| ....+...|...+.++.+.++.....-......+.. ++++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-cccc
Confidence 2222 235667777777762222222222222222 233467777777777777773221111122222333 6777
Q ss_pred HHHHHHHHHHhccccC
Q 038550 378 EASKVRELMKSREAKK 393 (423)
Q Consensus 378 ~A~~~~~~m~~~~~~~ 393 (423)
.+.-.+..+.+.|.+.
T Consensus 415 ~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 415 TALALYLYLAELGYEV 430 (552)
T ss_pred HHHHHHHHHHHhhhhH
Confidence 7776666666666543
No 317
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.30 E-value=7.2 Score=31.15 Aligned_cols=94 Identities=12% Similarity=0.011 Sum_probs=62.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGVGYDP-----VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (423)
..-+.+.|++++|..-|.+.+.. +++.. ..|..-..++.+.+.++.|+.-..+.++.+ +........-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 34467889999999999888876 33322 234444556778888888888888877754 112223333345777
Q ss_pred hcCChHHHHHHHhhC-CCCCCH
Q 038550 306 RAGLMEDAVKLIKNL-PVEPDA 326 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~-~~~~~~ 326 (423)
+...+++|++-|+++ ...|..
T Consensus 180 k~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcch
Confidence 888888888888877 445543
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.05 E-value=4.8 Score=30.40 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=63.0
Q ss_pred HHHHHHHHHH---HhccCcHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHH
Q 038550 259 PVSYIAILTA---CSHGGLVEKGKKYFDEMQADSVKPT---EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332 (423)
Q Consensus 259 ~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l 332 (423)
....+.|+.. -...++++++..+++.|.-. .|+ ..++. ...+...|++++|.++|+++...+....+..-
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kA 82 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKA 82 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHH
Confidence 3444444443 34578999999999999875 444 33333 33467899999999999999433322233333
Q ss_pred HHHHHh--cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 333 LGACRI--YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 333 ~~~~~~--~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+.++|. .||. .|...+......+.-.+++.+.+.+.
T Consensus 83 L~A~CL~al~Dp-------------------~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 83 LLALCLNAKGDA-------------------EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHhcCCh-------------------HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 333322 2222 24444445555555566666666665
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.75 E-value=3 Score=28.68 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 239 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
+.=++.+-+..+....+.|++....+.+.+|.+.+++..|.++++-.+.+ ...+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 33456666777777778889999999999999999999999999887755 1224446666554
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.51 E-value=2.7 Score=29.24 Aligned_cols=61 Identities=10% Similarity=0.082 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038550 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303 (423)
Q Consensus 242 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (423)
+..+-+..+....+.|++....+.+.+|.+.+++..|.++++-++.+ ..+....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 45566666667778888888899999999999999999999888776 22333367666643
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.28 E-value=0.83 Score=25.57 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=24.5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 361 GYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.++..++..|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788999999999999999999998763
No 322
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.07 E-value=3.9 Score=28.51 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=32.9
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
.+.+-|++.+..+.+++|.+.+|+..|.++++-+...-......|..++
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3467788888888888888888888888888888776554444565554
No 323
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.02 E-value=10 Score=30.22 Aligned_cols=124 Identities=12% Similarity=0.013 Sum_probs=80.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHH-----HHHHHHhcCChHHHHHHHhhCCCCCCHhHHHH----
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC-----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA---- 331 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---- 331 (423)
.|..++.+.. .+.+ +.....+.+... +...+|.. +...+..++++++|+..++..--.|....+..
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~---n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQA---NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhh---ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 4445554433 2333 444445555543 22233333 34677899999999999986622343333333
Q ss_pred -HHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 332 -LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 332 -l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
|.+.....|.+++|+..+....+..- .+.....-++++...|+-++|+.-|++....+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 44667889999999998887654321 12234456788999999999999999998876
No 324
>PRK09687 putative lyase; Provisional
Probab=88.94 E-value=14 Score=31.80 Aligned_cols=135 Identities=11% Similarity=-0.007 Sum_probs=68.8
Q ss_pred chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcC--CHHHHHHHhccCCCCChhhHHHHHHHH
Q 038550 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG--RIDLANKIFDCLPVKDSASWNTLILGY 234 (423)
Q Consensus 157 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~li~~~ 234 (423)
+..+-...+.++.+.++. .+...+-.+.+ .++..+-...+.++.+.+ ..+-...+...+..++..+-...+.++
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aL 216 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGL 216 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 444444555555555542 33344333333 223333344444444432 222222333444455666666677777
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038550 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLL 304 (423)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (423)
.+.|+. .|+..+-+..+.+ + .....+.++...|.. +|...+..+... .||..+-...+.++
T Consensus 217 g~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 217 ALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 777763 4555555555432 2 234566777777775 577777777654 34655555555544
No 325
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.92 E-value=14 Score=31.57 Aligned_cols=60 Identities=18% Similarity=-0.003 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 329 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
++.....|...|.+.+|.++-+++...+|-+...+..++..+...|+--.|..-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344457889999999999999999999999999999999999999998888888877743
No 326
>PRK10941 hypothetical protein; Provisional
Probab=88.76 E-value=3 Score=35.50 Aligned_cols=61 Identities=18% Similarity=0.037 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 329 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+.+-.+|.+.++++.|.++.+.+....|+++.-+.--+..|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4555677888899999999999999999998888888888888999988888877777654
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.66 E-value=5.2 Score=37.59 Aligned_cols=164 Identities=13% Similarity=0.061 Sum_probs=99.2
Q ss_pred ChhhHHHHHHH-----HHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHH
Q 038550 22 NIVSWNAMVAN-----FAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLT 96 (423)
Q Consensus 22 ~~~~~~~ll~~-----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (423)
++.+|..+++. ..-.|+++.|..++..+. ....+.++..+.+.|..++|+++ .+|+.-
T Consensus 580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~- 642 (794)
T KOG0276|consen 580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQ- 642 (794)
T ss_pred ceEeEeeehHHHHHHHHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhh-
Confidence 44444444433 344567777766554443 22345566666677766666544 222221
Q ss_pred HHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHh
Q 038550 97 NALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176 (423)
Q Consensus 97 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 176 (423)
-.....+.|+++.|.++... ..+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+-+.
T Consensus 643 --rFelal~lgrl~iA~~la~e-~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 643 --RFELALKLGRLDIAFDLAVE-ANSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred --hhhhhhhcCcHHHHHHHHHh-hcchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 12334567888888777621 23456688888888889998888888877654 3345555666666665
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 220 (423)
...+-....+.|.. |.-..+|...|+++++.+++.+-.
T Consensus 711 l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 711 LAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhcC
Confidence 55555555555532 233345677889999888886553
No 328
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.53 E-value=9.7 Score=34.81 Aligned_cols=129 Identities=9% Similarity=0.067 Sum_probs=83.6
Q ss_pred hccCcHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-C-CCCCHhHHHHHHHHHHhcCChhHHH
Q 038550 270 SHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-P-VEPDANIWGALLGACRIYGNVELGA 346 (423)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~ 346 (423)
...|+...|.+-+....++ .-.|+.....+ ..+...|+++.+...+... + +.....+..++++.....|+++.|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3456666665544444443 22344433333 3345678888888888776 2 3445667888888888889999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCccccc
Q 038550 347 WAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQT 402 (423)
Q Consensus 347 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 402 (423)
...+.+....-.++......+..-...|-+|++...++++...+ |+...-|...
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~--~~~~~g~v~~ 431 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN--PETQSGWVNF 431 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC--Chhcccceee
Confidence 88888888776666665555444556678888888888886543 3333444433
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.49 E-value=0.68 Score=24.27 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 362 YYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
++..++.++.+.|++++|.+.++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 35667889999999999999999998754
No 330
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.36 E-value=3.9 Score=28.17 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=32.1
Q ss_pred CCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 320 LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
+.+-|++.+..+.+++|.+.+|+..|.++++-++..-..+...|..+
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 35677888888888888888888888888877665443333344444
No 331
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.12 E-value=13 Score=30.26 Aligned_cols=161 Identities=12% Similarity=0.062 Sum_probs=80.7
Q ss_pred CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhcc-CcchHHHHHHH
Q 038550 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL-HTHLFVANSIL 200 (423)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 200 (423)
-+..||-|.--+...|+++.|.+.|+...+.. +....+...-.-++.-.|++..|.+-+...-+.+. .|-...|--+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34567777777777777777777777776643 11222222222233345666666655554444332 22222222222
Q ss_pred HHHHhcCCHHHHHH-HhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHhcc
Q 038550 201 DFYTRSGRIDLANK-IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY-------DPVSYIAILTACSHG 272 (423)
Q Consensus 201 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-------~~~~~~~ll~~~~~~ 272 (423)
. +.-++.+|.. +.++....|..-|..-|-.|.- |++. ...+++.+... ..- =..||.-+..-+...
T Consensus 177 E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred H---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhcc
Confidence 1 2234444443 3344444454555444433321 1111 11223332221 111 125677888888888
Q ss_pred CcHHHHHHHHHHHHHcC
Q 038550 273 GLVEKGKKYFDEMQADS 289 (423)
Q Consensus 273 ~~~~~a~~~~~~~~~~~ 289 (423)
|+.++|..+|+-.+...
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 88888888888877654
No 332
>PRK09687 putative lyase; Provisional
Probab=88.04 E-value=16 Score=31.43 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=11.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
.+.++...|+. +|...+..+.+..|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 34444444443 35555555544444
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.02 E-value=1.3 Score=23.36 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 361 GYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+|..++..|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36788999999999999999999998764
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.75 E-value=6.5 Score=31.49 Aligned_cols=72 Identities=11% Similarity=-0.062 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCChHHH
Q 038550 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD---SVKPTEMHYACMVDLLGRAGLMEDA 313 (423)
Q Consensus 241 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 313 (423)
+.|.+.|-.+...+.--++.....|...| ...+.+++..++.+..+. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34455555555444333333333333333 244555555555555543 1234455555555555555555544
No 335
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.66 E-value=2.2 Score=34.98 Aligned_cols=85 Identities=11% Similarity=-0.034 Sum_probs=51.7
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHhh-CCCCCCHhHH-HHHHHHHHhcCChhHH
Q 038550 269 CSHGGLVEKGKKYFDEMQADSVKPTE-MHYACMVDLLGRAGLMEDAVKLIKN-LPVEPDANIW-GALLGACRIYGNVELG 345 (423)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~-~~l~~~~~~~~~~~~a 345 (423)
|....+++.|...|.+.+.. .|+. .-|..=+.++.+..+++.+..--++ +.+.||..-- -.+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 55666777777777666653 4555 3344445566667777766544333 3566665533 3344556677778888
Q ss_pred HHHHHHHHhc
Q 038550 346 AWAAEHLFML 355 (423)
Q Consensus 346 ~~~~~~~~~~ 355 (423)
+..+.++.++
T Consensus 98 I~~Lqra~sl 107 (284)
T KOG4642|consen 98 IKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHH
Confidence 8888777553
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.22 E-value=1.3 Score=22.45 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 038550 363 YILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
+..++..+...|++++|...+++.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444444444444444444443
No 337
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.93 E-value=15 Score=31.72 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhh
Q 038550 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319 (423)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (423)
++++++.++..=+..|+-||..+++.+|+.+.+.+++.+|.++...
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 3445555555555555556666666666666666665555555433
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.77 E-value=2.7 Score=33.98 Aligned_cols=72 Identities=21% Similarity=0.180 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc---chHHHHHH
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC---GYYILLSN 368 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 368 (423)
.+..+..+.+.+.+.+++...+.- +-+| |...-..|+..++-.|++++|..-++-+-++.|... .+|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 444566777888888888876544 5566 556677788888999999999888888888877643 34444443
No 339
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.18 E-value=3.1 Score=36.06 Aligned_cols=93 Identities=17% Similarity=0.070 Sum_probs=62.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (423)
..-|.+.|.+++|+..|...... .| +++++..-..+|.+...+..|+.-....+..+ ..-...|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 45689999999999999987764 45 88889888999999999998888777776542 1112233333333333444
Q ss_pred hHHHHHHHhhC-CCCCCH
Q 038550 310 MEDAVKLIKNL-PVEPDA 326 (423)
Q Consensus 310 ~~~a~~~~~~~-~~~~~~ 326 (423)
..+|.+-++.. .+.|+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhHHHHHhhCccc
Confidence 55555444443 466763
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.72 E-value=12 Score=30.02 Aligned_cols=78 Identities=10% Similarity=0.012 Sum_probs=48.7
Q ss_pred hcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHh---ccCcchHHHHHHHHHHHhcCCHH
Q 038550 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK---HLHTHLFVANSILDFYTRSGRID 210 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 210 (423)
.+.|+ +.|.+.|-++...+.--++.....+...| ...+.+++..++....+. +-.+++..+.+|+..|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33344 66777777777766444444444444433 466777777777766652 22566777777777777777777
Q ss_pred HHH
Q 038550 211 LAN 213 (423)
Q Consensus 211 ~A~ 213 (423)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 663
No 341
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.67 E-value=24 Score=33.44 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=61.8
Q ss_pred HHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 038550 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281 (423)
Q Consensus 202 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 281 (423)
...+.|+++.|.++..+.. +..-|..|..+..+.|++..|.+.|..... |..|+-.+...|+.+....+
T Consensus 646 lal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 3445667777766655443 556677777777777777777777765443 34455556666666555555
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038550 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321 (423)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (423)
-....+.| +.|. -.-+|...|+++++.+++.+-+
T Consensus 715 a~~~~~~g-~~N~-----AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 715 ASLAKKQG-KNNL-----AFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHhhc-ccch-----HHHHHHHcCCHHHHHHHHHhcC
Confidence 55555554 2222 2334556677777777766553
No 342
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.52 E-value=3.7 Score=28.18 Aligned_cols=49 Identities=16% Similarity=-0.001 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCC
Q 038550 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQ--HCGYYILLSNMYAEAGK 375 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 375 (423)
...-.+...+...|++++|++.+-.+.+.++. +...-..|+..+.-.|.
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34444444555555555555555555544432 23334444444444444
No 343
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.48 E-value=1.6 Score=25.15 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=20.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 365 LLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 365 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.|+.+|...|+.+.|.+++++..+.|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46778888888888888888887544
No 344
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.36 E-value=1.9 Score=26.03 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=25.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcchHH
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 364 (423)
+.-++.+.|++++|.+..+.+.+.+|++..+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 456778999999999999999999999865543
No 345
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=83.75 E-value=14 Score=27.36 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 344 LGAWAAEHLFMLK--PQHCGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 344 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
.+..+|..+...+ ...+.+|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7778888886644 56667788888889999999999988864
No 346
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.92 E-value=25 Score=29.90 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=28.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHhccCcHHHH
Q 038550 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSY-------IAILTACSHGGLVEKG 278 (423)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-------~~ll~~~~~~~~~~~a 278 (423)
+..-..+.+++++|+..+.++...|+..+..+. ..+...|...|+...-
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 344456667777777777777777776665443 2334445555544433
No 347
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=82.80 E-value=3 Score=21.46 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=23.0
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
|+.+.+..+|+++....|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888888888777664
No 348
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.05 E-value=6.1 Score=37.01 Aligned_cols=96 Identities=16% Similarity=0.031 Sum_probs=53.9
Q ss_pred cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-C-CCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 038550 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-P-VEPDANIWGALLGACRIYGNVELGAWAA 349 (423)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 349 (423)
.|+...|...+.........-.....-.|.+...+.|-..+|-.++.+. . ....+.++-.+.+++....+++.|++.+
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 3566666666655544321112223334455555556555666555433 2 1234456666667777777777777777
Q ss_pred HHHHhcCCCCcchHHHHH
Q 038550 350 EHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 350 ~~~~~~~p~~~~~~~~l~ 367 (423)
+++.+..|.++..-+.|.
T Consensus 700 ~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 700 RQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHhcCCCChhhHHHHH
Confidence 777777777666655443
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.70 E-value=27 Score=28.51 Aligned_cols=76 Identities=12% Similarity=-0.036 Sum_probs=52.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc--CCCCChhhHHHHHHH
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPTEMHYACMVDL 303 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~ 303 (423)
.+.-++.+.+.+...+++...++-.+.. +.|...-..++..+|-.|++++|..-++-.-.. ...+-..+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455667778888889888888766653 225566777888899999999998877776654 223334555555544
No 350
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.69 E-value=44 Score=30.88 Aligned_cols=90 Identities=11% Similarity=0.158 Sum_probs=46.8
Q ss_pred cCChHHHHHHHhhC-CCCCCHh----HHHHHHHHHHhcC-ChhHHHH------HHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 307 AGLMEDAVKLIKNL-PVEPDAN----IWGALLGACRIYG-NVELGAW------AAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 307 ~~~~~~a~~~~~~~-~~~~~~~----~~~~l~~~~~~~~-~~~~a~~------~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
.|+.++|+.++-.+ .+.||.. -|..+++.+-... +-...+. ..+++.-.+..+..+..-.+.--....
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHLR 790 (831)
T ss_pred cccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHHH
Confidence 37788888887666 5778765 3445555443221 1111111 112222222333222211112234567
Q ss_pred ChhHHHHHHHHHHhccccCCCC
Q 038550 375 KWDEASKVRELMKSREAKKNPG 396 (423)
Q Consensus 375 ~~~~A~~~~~~m~~~~~~~~~~ 396 (423)
++..|+++++++.+.+-+.+|.
T Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~ 812 (831)
T PRK15180 791 DYTQALQYWQRLEKVNGPTEPV 812 (831)
T ss_pred HHHHHHHHHHHHHhccCCCcch
Confidence 8999999999998866544443
No 351
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.59 E-value=32 Score=29.28 Aligned_cols=102 Identities=15% Similarity=-0.008 Sum_probs=51.6
Q ss_pred ccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhh----chhCCCCCCchhHHHHHHHhhcCCCCc-cHH
Q 038550 4 KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVRE----MPIHNEFPNSVTLTNVLPACARGHFLR-PGK 78 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~ 78 (423)
+++++++|++++..- ...+.+.|+...|-++-.- ..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456777776665432 2334555555544443322 233455556555555555554433221 233
Q ss_pred HHHHHHHH---cC--CCCchHHHHHHHHHHHhcCChHHHHHHh
Q 038550 79 EIHARIIR---KG--LNFDLFLTNALTDMYAKCGCLNLAQNVF 116 (423)
Q Consensus 79 ~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 116 (423)
++.+.+++ .| ..-++..+..+...|.+.|++.+|+..|
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 33333332 22 1246778888889999999999998888
No 352
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=80.87 E-value=48 Score=30.83 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=42.9
Q ss_pred CCCHhHH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH--hcCChhHHHHHHHHHHh
Q 038550 323 EPDANIW-GALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA--EAGKWDEASKVRELMKS 388 (423)
Q Consensus 323 ~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 388 (423)
.|+..++ +.++..+.+.|-..+|..++.....+.|.+...|..++..-. ..-+...++.+|+.|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~ 524 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALR 524 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHH
Confidence 4444433 456666777777888888888888887777777776665432 12236667777777754
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.13 E-value=25 Score=29.88 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=42.6
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHH-----
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT----- 204 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 204 (423)
|.+++..++|.+++...-+.-+..-+........-|-.|.+.+.+..+.++-..-.+..-.-...-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 566667777777666555444322122223334444455666666666555554444322222223444444433
Q ss_pred hcCCHHHHHHHh
Q 038550 205 RSGRIDLANKIF 216 (423)
Q Consensus 205 ~~~~~~~A~~~~ 216 (423)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 345555555554
No 354
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.34 E-value=1.9 Score=37.23 Aligned_cols=85 Identities=18% Similarity=0.137 Sum_probs=45.6
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHh-HHHHHHHHHHhcCChhHHHHH
Q 038550 271 HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDAN-IWGALLGACRIYGNVELGAWA 348 (423)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~ 348 (423)
..|.++.|++.|...+... ++....|..-..++.+.+++..|++-+... .+.||.. -|-.=-.+-...|++++|...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 4566666666666666553 344444444455556666666666555544 3444432 222222334455666666666
Q ss_pred HHHHHhcC
Q 038550 349 AEHLFMLK 356 (423)
Q Consensus 349 ~~~~~~~~ 356 (423)
++.+.+++
T Consensus 205 l~~a~kld 212 (377)
T KOG1308|consen 205 LALACKLD 212 (377)
T ss_pred HHHHHhcc
Confidence 66666655
No 355
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.73 E-value=9.7 Score=29.91 Aligned_cols=43 Identities=14% Similarity=0.048 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 342 VELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 342 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
+++|...|+++...+|.+......| ... +.|-++..++.+.+.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksL-e~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSL-EMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHH-HHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHH-HHH------HhhHHHHHHHHHHHh
Confidence 5678888888888999875444444 333 246666666655543
No 356
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=77.49 E-value=56 Score=29.69 Aligned_cols=54 Identities=7% Similarity=0.030 Sum_probs=30.7
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHHHHc
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPV--SYIAILTACS--HGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 288 (423)
+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34667777777777777765 444433 3333334432 244566777777666554
No 357
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.37 E-value=76 Score=31.13 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=34.7
Q ss_pred HHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCC-------hhhHHHHHHHHHhc
Q 038550 98 ALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSD-------CSESLSLFSEMRLL 152 (423)
Q Consensus 98 ~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~m~~~ 152 (423)
.+|--|.|+|++++|.++. +........+-..+..|....+ -++...-|++....
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4666788999999999888 4444555667777777766533 23444555555543
No 358
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.37 E-value=22 Score=24.86 Aligned_cols=85 Identities=13% Similarity=0.053 Sum_probs=50.4
Q ss_pred CccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhc
Q 038550 74 LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL 152 (423)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 152 (423)
.++|..+-+.+...+-. ...+--.-+..+...|++++|..+. ....||...|.+|-.. +.|..++...-+.+|-..
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34555555544433211 2222223334566788888888888 5567777777665443 566667777777777777
Q ss_pred CCCCchhhHH
Q 038550 153 GMKHDVVSFM 162 (423)
Q Consensus 153 ~~~~~~~~~~ 162 (423)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 56555553
No 359
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.24 E-value=19 Score=29.59 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhcC--CC----CcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 343 ELGAWAAEHLFMLK--PQ----HCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 343 ~~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
..|.+.|+++.+.. |. ...+...++....+.|++++|.+.|.++...+-
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 34555555555433 22 234566778888899999999999999887654
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.63 E-value=6.6 Score=22.60 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=13.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHc
Q 038550 230 LILGYGMLGEVDTAINLFEAMRED 253 (423)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~~ 253 (423)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555666666666666665543
No 361
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.09 E-value=47 Score=28.10 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCC---------------CChhhHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCCHHH
Q 038550 198 SILDFYTRSGRIDLANKIFDCLPV---------------KDSASWNTLILGYGMLGEVDTAINLFEAMRE-DGVGYDPVS 261 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~ 261 (423)
.|...|...+.+.+..+++.++.. .-...|..-|+.|....+-.+-..++++... ....|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 345555555666555555554431 0124566667777777776666677776543 223455544
Q ss_pred HHHHHHH----HhccCcHHHHHHHHHHHHHc----CCCCCh---hhHHHHHHHHHhcCC----hHHHHHHHhhCCCCCCH
Q 038550 262 YIAILTA----CSHGGLVEKGKKYFDEMQAD----SVKPTE---MHYACMVDLLGRAGL----MEDAVKLIKNLPVEPDA 326 (423)
Q Consensus 262 ~~~ll~~----~~~~~~~~~a~~~~~~~~~~----~~~~~~---~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~ 326 (423)
...+-.+ ..+.|.+++|..-|=++.+. | .|-. .-|..|..++.+.|- ..+|. -....|..
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPEI 304 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPEI 304 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHHH
Confidence 4433222 34557777765433333322 3 2322 224445555555541 11110 01234455
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHH
Q 038550 327 NIWGALLGACRIYGNVELGAWAAE 350 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~~~~ 350 (423)
.....|+.+|- ..++.+-++++.
T Consensus 305 lAMTnlv~aYQ-~NdI~eFE~Il~ 327 (440)
T KOG1464|consen 305 LAMTNLVAAYQ-NNDIIEFERILK 327 (440)
T ss_pred HHHHHHHHHHh-cccHHHHHHHHH
Confidence 55666776663 334444444433
No 362
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.72 E-value=48 Score=28.04 Aligned_cols=195 Identities=17% Similarity=0.101 Sum_probs=119.5
Q ss_pred cCCcchHHHHHHH-HhcCCChhhHHHHHHHHHhcCCCCchh---hHHHHHHHHHhHhhHHhhhHHHHHHHHh---cc--C
Q 038550 120 FRDEVSYNILIVG-YSQTSDCSESLSLFSEMRLLGMKHDVV---SFMGAISACANLAAIKQGKEIHGVTIRK---HL--H 190 (423)
Q Consensus 120 ~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~ 190 (423)
+||+..-|..-.+ -.+..+.++|+.-|++..+....-... ...-++....+.+++++....+.+++.. .+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555443332221 134557899999999988753233333 4455678888999999999988887642 12 1
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHhccCC-----CCChh----hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC----
Q 038550 191 THLFVANSILDFYTRSGRIDLANKIFDCLP-----VKDSA----SWNTLILGYGMLGEVDTAINLFEAMREDGVGY---- 257 (423)
Q Consensus 191 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---- 257 (423)
.+....|++++....+.+.+--..+|+.-. ..+.. |-.-+...|...|.+.+...+++++...--.-
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 234456777777777777666666655322 11222 33456777888888888888888887642111
Q ss_pred C-------HHHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCChhhHHHHH----HHHHhcCChHHHH
Q 038550 258 D-------PVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMV----DLLGRAGLMEDAV 314 (423)
Q Consensus 258 ~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~----~~~~~~~~~~~a~ 314 (423)
| ...|..=|..|..+.+-.....+|++.... .--|.+.....+- .+..+.|++++|-
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 1 235666677787778777778888877654 2234444443322 1234567777764
No 363
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.68 E-value=71 Score=29.93 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=105.2
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
|.....+++..+..+-.+.-+..+..+|...| -+...|..++.+|... ..++-..+++++.+..+ .|...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 55567778888999989999999999999875 3678899999999888 66788899999888653 23444445555
Q ss_pred HHHhcCChHHHHHHHhhC--CCCC---CH---hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CcchHHHHHHHHHh
Q 038550 303 LLGRAGLMEDAVKLIKNL--PVEP---DA---NIWGALLGACRIYGNVELGAWAAEHLFMLKPQ--HCGYYILLSNMYAE 372 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~--~~~~---~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~ 372 (423)
.|-+ ++.+.+..+|.++ .+-| +. ..|..|... -..+.+.-..+...+...... -..++.-+-..|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5554 8888888888876 2222 21 245544432 134455555555554443221 11233344466788
Q ss_pred cCChhHHHHHHHHHHh
Q 038550 373 AGKWDEASKVRELMKS 388 (423)
Q Consensus 373 ~g~~~~A~~~~~~m~~ 388 (423)
..++++|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 8999999999985544
No 364
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.41 E-value=51 Score=28.11 Aligned_cols=104 Identities=11% Similarity=-0.028 Sum_probs=47.4
Q ss_pred hcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHH----HHHHHhcCCCCchhhHHHHHHHHHhHhhHH-hhh
Q 038550 105 KCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSL----FSEMRLLGMKHDVVSFMGAISACANLAAIK-QGK 178 (423)
Q Consensus 105 ~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~ 178 (423)
+++++++|.+++ +. ...+.+.|+...|.++ ++-..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456666776665 11 2233444444433333 333334455566555555555544332211 222
Q ss_pred HHHHHHHHhc-----cCcchHHHHHHHHHHHhcCCHHHHHHHhccC
Q 038550 179 EIHGVTIRKH-----LHTHLFVANSILDFYTRSGRIDLANKIFDCL 219 (423)
Q Consensus 179 ~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 219 (423)
++.+.+.+.. ..-++.....+...|.+.|++.+|+.-|-.-
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 3333333321 2234566677888888888888887765433
No 365
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.25 E-value=24 Score=29.31 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=15.5
Q ss_pred HHHHhccCcHHHHHHHHHHHH
Q 038550 266 LTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~ 286 (423)
.+-+.+.|++.+|..-|++++
T Consensus 185 GN~lfk~~~ykEA~~~YreAi 205 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAI 205 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHH
Confidence 345777888888888877765
No 366
>PRK10941 hypothetical protein; Provisional
Probab=75.11 E-value=17 Score=31.11 Aligned_cols=65 Identities=12% Similarity=-0.061 Sum_probs=42.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchH
Q 038550 299 CMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY 363 (423)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 363 (423)
.+-.+|.+.++++.|+.+.+.+ .+.| ++.-+.--.-.|.+.|.+..|..-++...+..|+++.+-
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 3455667777777777777766 4445 344455555557777777777777777777777766553
No 367
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.63 E-value=1.6e+02 Score=33.54 Aligned_cols=145 Identities=10% Similarity=-0.041 Sum_probs=87.7
Q ss_pred HHHHHHhCCChHHHHHHHhhc----hhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 038550 29 MVANFAQNRLELKALQLVREM----PIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104 (423)
Q Consensus 29 ll~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (423)
+..+=.+.+.+.+|+..+++- .+.. .....|..+...|+..++++...-+...-. -++..++ -+-...
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~-qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQ-QILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHH-HHHHHH
Confidence 334556678888999888883 2221 122234444448999999998887776411 1222232 344566
Q ss_pred hcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHH-HHHHHHHhHhhHHhhhH
Q 038550 105 KCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM-GAISACANLAAIKQGKE 179 (423)
Q Consensus 105 ~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~ 179 (423)
..|++..|...| ...++...+++.++......|.++.++-..+-..... .+....++ .-+.+--+.++++....
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 789999999998 3334456678888888888888888777665554432 23222332 22334456677777666
Q ss_pred HHH
Q 038550 180 IHG 182 (423)
Q Consensus 180 ~~~ 182 (423)
.+.
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 654
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.39 E-value=56 Score=28.12 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=20.3
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038550 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (423)
..|...|.+.+|.++.++....+ +.+...+-.|+..+...|+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhcc
Confidence 34444555555555555544432 3344444445555555554
No 369
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=74.20 E-value=21 Score=24.16 Aligned_cols=38 Identities=8% Similarity=0.118 Sum_probs=21.9
Q ss_pred hcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHH
Q 038550 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243 (423)
Q Consensus 205 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 243 (423)
..|+.+.|.+++..++ ..+..|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3456666666666666 5555666666666555554433
No 370
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.98 E-value=51 Score=28.16 Aligned_cols=85 Identities=11% Similarity=0.023 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCHHHHHHH----hccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----
Q 038550 198 SILDFYTRSGRIDLANKI----FDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC---- 269 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---- 269 (423)
.=|.++...++|.++... |+.-.+-.+.....-|-.|.+.+.+..+.++-..-.+..-.-+...|..++..|
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 346788888888887544 343333355566666777888888888888877766542222334466665554
Q ss_pred -hccCcHHHHHHHH
Q 038550 270 -SHGGLVEKGKKYF 282 (423)
Q Consensus 270 -~~~~~~~~a~~~~ 282 (423)
.-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 4468888888776
No 371
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.61 E-value=98 Score=31.52 Aligned_cols=157 Identities=15% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHhccCcH--HHHHHHHHHHHHcCCCCChhhHHH--
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMRE---DGVGYDPVSYIAILTACSHGGLV--EKGKKYFDEMQADSVKPTEMHYAC-- 299 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~-- 299 (423)
|..|+..|...|+.++|+++|.+... ..-.--...+..++..+.+.+.. +..+++-+-.......-....+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHHHhcCChHHHHHHHhhC---CCCCCHhHHHHHHHHHHhcCC-----------------hhHHHHHH
Q 038550 300 ----------MVDLLGRAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGN-----------------VELGAWAA 349 (423)
Q Consensus 300 ----------l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 349 (423)
-+-.|......+-+..+++.+ .-.++....+.++.-|+..=+ .+.....+
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Q ss_pred HHHHhcCCC-------CcchHHHHHHHHHhcCChhHHHHHH
Q 038550 350 EHLFMLKPQ-------HCGYYILLSNMYAEAGKWDEASKVR 383 (423)
Q Consensus 350 ~~~~~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~ 383 (423)
+.-....|. ....|...+..+.+.|+.++|+.++
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iy 707 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIY 707 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHH
No 372
>PRK12798 chemotaxis protein; Reviewed
Probab=73.36 E-value=73 Score=29.01 Aligned_cols=184 Identities=17% Similarity=0.165 Sum_probs=108.0
Q ss_pred cCCHHHHHHHhccCCC----CChhhHHHHHHHH-hccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCcHH
Q 038550 206 SGRIDLANKIFDCLPV----KDSASWNTLILGY-GMLGEVDTAINLFEAMREDGVGYD----PVSYIAILTACSHGGLVE 276 (423)
Q Consensus 206 ~~~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~ 276 (423)
.|+.++|.+.+..+.. +....|-.|+.+- ....++.+|+.+|+...-. -|. ......-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5778888888877763 2445566666553 4456888999999887653 232 223444445567788888
Q ss_pred HHHHHHHHHHHc-CCCCChhhH-HHHHHHHHhc---CChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHH
Q 038550 277 KGKKYFDEMQAD-SVKPTEMHY-ACMVDLLGRA---GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351 (423)
Q Consensus 277 ~a~~~~~~~~~~-~~~~~~~~~-~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 351 (423)
++..+-.....+ ...|-..-| ..+..++.+. ...+....++..|.-.--..+|..+.+.-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 877766665554 223332222 2233333333 23455556666664223456888888888899999999998888
Q ss_pred HHhcCCCCcchHHHHHHHH-----HhcCChhHHHHHHHHHHhcccc
Q 038550 352 LFMLKPQHCGYYILLSNMY-----AEAGKWDEASKVRELMKSREAK 392 (423)
Q Consensus 352 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~m~~~~~~ 392 (423)
+..+...+ ..-...+..| .-..+++++.+.+..+-...+.
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~ 327 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDRDKLS 327 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCC
Confidence 88876322 2212222222 2334566666666555444443
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.92 E-value=9.5 Score=25.19 Aligned_cols=45 Identities=11% Similarity=-0.007 Sum_probs=32.2
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcchHH---HHHHHHHhcCChhHHHHH
Q 038550 338 IYGNVELGAWAAEHLFMLKPQHCGYYI---LLSNMYAEAGKWDEASKV 382 (423)
Q Consensus 338 ~~~~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~ 382 (423)
...+.+.|+..++.+++..++.+.-|. .++.+|+..|++.+++..
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778888888888887666554444 455677888888877765
No 374
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.43 E-value=16 Score=29.33 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=28.4
Q ss_pred CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 321 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
...|++.++..++.++...|+.++|.+..+++...-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567777777777777778888888777777777777
No 375
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.37 E-value=30 Score=24.18 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=29.6
Q ss_pred HHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 038550 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254 (423)
Q Consensus 201 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 254 (423)
..+...|++++|..+.+...-||...|-++-. .+.|-.+++...+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34556666666666666666666666655433 24455555555555555544
No 376
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=72.35 E-value=3.1 Score=37.84 Aligned_cols=99 Identities=9% Similarity=0.014 Sum_probs=70.6
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCChHHHHHHHhhC-CCCCCH-hHHHHHHHHHHhcCCh
Q 038550 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM-VDLLGRAGLMEDAVKLIKNL-PVEPDA-NIWGALLGACRIYGNV 342 (423)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~ 342 (423)
+......+.++.|..++.++++. .||...|-.. ..++.+.+++..|+.=+.++ ...|.. ..|-.=..++...+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 44566778999999999999985 5665544333 37788889998888765554 555542 2333333566677888
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHH
Q 038550 343 ELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 343 ~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
.+|...|+......|.++.+-..+
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHH
Confidence 999999999999999987665544
No 377
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.02 E-value=1.2e+02 Score=30.72 Aligned_cols=214 Identities=12% Similarity=0.016 Sum_probs=116.2
Q ss_pred HhHhhHHhhhHHHHHHHHhccCcchH-------HHHHH-HHHHHhcCCHHHHHHHhccCC--------CCChhhHHHHHH
Q 038550 169 ANLAAIKQGKEIHGVTIRKHLHTHLF-------VANSI-LDFYTRSGRIDLANKIFDCLP--------VKDSASWNTLIL 232 (423)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~li~ 232 (423)
....++.+|..++.++...-..|+.. .++.+ .......|++++|.++-+... ......+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44578888888888876643333221 22222 123345688888887776443 224566777778
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHH---HHHHHH--HHHhccCcH--HHHHHHHHHHHHc--CCC----CChhhHHH
Q 038550 233 GYGMLGEVDTAINLFEAMREDGVGYDPV---SYIAIL--TACSHGGLV--EKGKKYFDEMQAD--SVK----PTEMHYAC 299 (423)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll--~~~~~~~~~--~~a~~~~~~~~~~--~~~----~~~~~~~~ 299 (423)
+..-.|++++|..+..+..+..-.-+.. .+..+. ..+..+|.. .+.+..+...... +-+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888899999998887765532122322 222222 235566733 3333334433332 111 12234444
Q ss_pred HHHHHHhcCChHHHHHHHhhC---C--CCCCH--h--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-c-chHHHH--
Q 038550 300 MVDLLGRAGLMEDAVKLIKNL---P--VEPDA--N--IWGALLGACRIYGNVELGAWAAEHLFMLKPQH-C-GYYILL-- 366 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~---~--~~~~~--~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~-~~~~~l-- 366 (423)
+..++.+ .+.+..-.... + ..|.. . .+..|+......|+.++|...+.++......+ + ..|...
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555554 33333222211 1 12222 1 22366788889999999999999987754222 2 222222
Q ss_pred ---HHHHHhcCChhHHHHHHHH
Q 038550 367 ---SNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 367 ---~~~~~~~g~~~~A~~~~~~ 385 (423)
...-..+|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 1223467888888777665
No 378
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=72.02 E-value=8.3 Score=31.54 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=26.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 338 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
+.+|.+.+.+++.++.++-|.....|..++..-.+.|+++.|.+.|++..+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 344455555555555555555555555555555555555555555554444
No 379
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.98 E-value=41 Score=25.52 Aligned_cols=50 Identities=18% Similarity=0.444 Sum_probs=25.2
Q ss_pred ChhhHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 038550 223 DSASWNTLILGYGMLGE-VDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 272 (423)
+...|.+++.+..+..- --.+..+|.-|++.+.++++.-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 33445555555544333 233445555555555555555555555555443
No 380
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=71.92 E-value=7.1 Score=30.62 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 342 VELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 342 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
+++|+.-|++++.++|....++..++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 466777888888889998888888888876554
No 381
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=71.35 E-value=73 Score=28.17 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=44.1
Q ss_pred ChhhHHHHHHHHhcc---CC---------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 038550 223 DSASWNTLILGYGML---GE---------VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290 (423)
Q Consensus 223 ~~~~~~~li~~~~~~---g~---------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 290 (423)
|+.+|-.++..--.. +. .+.-+.++++..+.+. -+......++..+.+..+.+...+-++++....
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~- 95 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN- 95 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-
Confidence 666777666532211 11 3344566666666522 345556666666666666666666677766652
Q ss_pred CCChhhHHHHHHHH
Q 038550 291 KPTEMHYACMVDLL 304 (423)
Q Consensus 291 ~~~~~~~~~l~~~~ 304 (423)
+-+...|...+...
T Consensus 96 ~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 96 PGSPELWREYLDFR 109 (321)
T ss_pred CCChHHHHHHHHHH
Confidence 23455555555443
No 382
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.05 E-value=86 Score=28.83 Aligned_cols=207 Identities=9% Similarity=-0.023 Sum_probs=98.5
Q ss_pred HHHhCCChHHHHHHHhhchhCCCCCCchh--HHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchH--HHHHHHHHHHhcC
Q 038550 32 NFAQNRLELKALQLVREMPIHNEFPNSVT--LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF--LTNALTDMYAKCG 107 (423)
Q Consensus 32 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 107 (423)
..++.|+.+-+..+++ .|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|
T Consensus 8 ~A~~~g~~~iv~~Ll~----~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIARRLLD----IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 3455666655544443 455554422 233444555666654 445555666554432 1122344556778
Q ss_pred ChHHHHHHhchhc-C----CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhh--HHHHHHHHHhHhhHHhhhHH
Q 038550 108 CLNLAQNVFNISF-R----DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS--FMGAISACANLAAIKQGKEI 180 (423)
Q Consensus 108 ~~~~a~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~ 180 (423)
+.+.+..+++... . +..-.+ .+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+..+
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 8877777662211 1 111122 22333344554 45555666676654321 12334444556666554444
Q ss_pred HHHHHHhccCcchH--HHHHHHHHHHhcCCHHHHHHHhccCCCCChh---hHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 038550 181 HGVTIRKHLHTHLF--VANSILDFYTRSGRIDLANKIFDCLPVKDSA---SWNTLILGYGMLGEVDTAINLFEAMREDGV 255 (423)
Q Consensus 181 ~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 255 (423)
+ +.|..++.. .-.+-+...+..|+.+-+.-+++.-..++.. ...+++...+..|+.+ +.+.+.+.|.
T Consensus 155 l----~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ga 226 (413)
T PHA02875 155 I----DHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGA 226 (413)
T ss_pred H----hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCc
Confidence 3 344332211 0112333455667777777776654433221 1123444344556654 4445555666
Q ss_pred CCCH
Q 038550 256 GYDP 259 (423)
Q Consensus 256 ~p~~ 259 (423)
.++.
T Consensus 227 d~n~ 230 (413)
T PHA02875 227 DCNI 230 (413)
T ss_pred Ccch
Confidence 6654
No 383
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.67 E-value=1.1e+02 Score=30.00 Aligned_cols=212 Identities=10% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHhccCc----chHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHh-ccCCHHHHHHHHH
Q 038550 174 IKQGKEIHGVTIRKHLHT----HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG-MLGEVDTAINLFE 248 (423)
Q Consensus 174 ~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~ 248 (423)
+..|.++++......... +...|..+|..-.++ ++.+.+-+.--+.....++-.+...+. ...+++.|+..+.
T Consensus 7 l~lAeey~~~A~~~~~~~~~~~~l~~Y~kLI~~ai~C--L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~ 84 (608)
T PF10345_consen 7 LSLAEEYLEKAHSLATKVKSEEQLKQYYKLIATAIKC--LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLE 84 (608)
T ss_pred HHHHHHHHHHhHHHHHhcCChhhHHHHHHHHHHHHHH--HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred HHHHcCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCCCChhhHHHH-HHHHHhcCChHHHHHHHh
Q 038550 249 AMREDGVGYDP-----VSYIAILTACSHGGLVEKGKKYFDEMQAD----SVKPTEMHYACM-VDLLGRAGLMEDAVKLIK 318 (423)
Q Consensus 249 ~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~ 318 (423)
+....--+++. .....++..+.+.+... |...+++.++. +..+-...|.-+ +..+...++...|.+.++
T Consensus 85 k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~ 163 (608)
T PF10345_consen 85 KAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQ 163 (608)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHH
Q ss_pred hC------CCCCCHhHHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCC----------cchHHHHHHHHH--hcCChhH
Q 038550 319 NL------PVEPDANIWGALLGAC--RIYGNVELGAWAAEHLFMLKPQH----------CGYYILLSNMYA--EAGKWDE 378 (423)
Q Consensus 319 ~~------~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~----------~~~~~~l~~~~~--~~g~~~~ 378 (423)
.+ ...|-..++-.++.+. ...+..+.+.+.++++....... ..++..++..++ ..|+++.
T Consensus 164 ~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~ 243 (608)
T PF10345_consen 164 SIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKN 243 (608)
T ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHH
Q ss_pred HHHHHHHHHh
Q 038550 379 ASKVRELMKS 388 (423)
Q Consensus 379 A~~~~~~m~~ 388 (423)
+.+.++++.+
T Consensus 244 ~~~~L~~lq~ 253 (608)
T PF10345_consen 244 SKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHH
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.24 E-value=20 Score=28.86 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 256 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
.|++..|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444555555444444443
No 385
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.15 E-value=15 Score=31.92 Aligned_cols=83 Identities=22% Similarity=0.165 Sum_probs=48.5
Q ss_pred HHHhcCChHHHHHHHhhC--CC--CC--CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 303 LLGRAGLMEDAVKLIKNL--PV--EP--DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~--~~--~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
-|.+..++..|...|.+- .. .| +.+.|+.=..+-...|++..++.-..++...+|.+..+|..-+.++....++
T Consensus 90 ~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~ 169 (390)
T KOG0551|consen 90 EYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERF 169 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHH
Confidence 344555555555555443 11 11 2334444444445556777777777777777777777777777777777776
Q ss_pred hHHHHHHHH
Q 038550 377 DEASKVREL 385 (423)
Q Consensus 377 ~~A~~~~~~ 385 (423)
++|....++
T Consensus 170 ~~a~nw~ee 178 (390)
T KOG0551|consen 170 AEAVNWCEE 178 (390)
T ss_pred HHHHHHHhh
Confidence 666555444
No 386
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.09 E-value=9.4 Score=25.22 Aligned_cols=45 Identities=4% Similarity=0.014 Sum_probs=18.8
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHH
Q 038550 271 HGGLVEKGKKYFDEMQADSVKPT--EMHYACMVDLLGRAGLMEDAVK 315 (423)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~ 315 (423)
...+.++|+..|+...+.-..+. ..++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555444311111 1233344444444454444443
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.96 E-value=36 Score=24.98 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038550 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301 (423)
Q Consensus 242 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 301 (423)
+..+-+..+....+.|++......+.+|.+.+++..|..+|+-++.. ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 34455566666778888888888888888889999998888888765 223333455444
No 388
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.78 E-value=31 Score=25.28 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=34.4
Q ss_pred CCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 320 LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
+.+.|++.+...-++++.+-+|+..|.++++-++..-+..-..|-.+
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 35678888888888888888888888888888776655444444444
No 389
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=69.65 E-value=92 Score=28.63 Aligned_cols=63 Identities=13% Similarity=-0.005 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 329 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
...|+.-|...|++.+|...++++---.=.+...+.+++.+..+.|+-+..+.+++.....|+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 455667777777777777776654222222334455666666666666666666666655543
No 390
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=69.59 E-value=86 Score=28.28 Aligned_cols=122 Identities=11% Similarity=0.045 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHH---
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP--VEPDANIWGAL--- 332 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~l--- 332 (423)
...++..+-..+..+|+.+.|.+++++..-.--..-...++.+.. -...|. .++. ..-|...|.++
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~-~~~~g~--------~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS-NLTSGN--------CRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc-ccccCc--------cccCCccccchHHHHHHHHH
Confidence 456677777778888888888888877654200000000100000 000010 0111 11244445444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCC-CcchHHHHHHHHH-hcCChhHHHHHHHHHHh
Q 038550 333 LGACRIYGNVELGAWAAEHLFMLKPQ-HCGYYILLSNMYA-EAGKWDEASKVRELMKS 388 (423)
Q Consensus 333 ~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 388 (423)
+..+.+.|-+..|.+..+-+..++|. ||-....+++.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 46678899999999999999999988 8877777777664 77888878888777654
No 391
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.57 E-value=15 Score=34.64 Aligned_cols=86 Identities=12% Similarity=0.005 Sum_probs=69.7
Q ss_pred hcCChHHHHHHHhhC-CCCC--CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 038550 306 RAGLMEDAVKLIKNL-PVEP--DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 382 (423)
..|+...|...+... ...| ..+....|.+...+.|-.-.|-.++.+...+....|-++..+++++....+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 458888888887766 4444 2234455667777888888999999999999888899999999999999999999999
Q ss_pred HHHHHhccc
Q 038550 383 RELMKSREA 391 (423)
Q Consensus 383 ~~~m~~~~~ 391 (423)
+++..+...
T Consensus 699 ~~~a~~~~~ 707 (886)
T KOG4507|consen 699 FRQALKLTT 707 (886)
T ss_pred HHHHHhcCC
Confidence 999877543
No 392
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=69.22 E-value=6.9 Score=28.90 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=24.8
Q ss_pred HhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHH
Q 038550 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167 (423)
Q Consensus 133 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 167 (423)
.-+.|.-..|.++|++|++.|-+||. ++.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34456677899999999999998884 5555543
No 393
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.62 E-value=21 Score=24.62 Aligned_cols=53 Identities=17% Similarity=0.075 Sum_probs=33.1
Q ss_pred HhcCChhHHHHHHHHHHhcCCC----C-----cchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQ----H-----CGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+.|++.+|.+.+.+..+.... . ......++......|++++|...+++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4667777776666666543211 1 122334566677888888888888887654
No 394
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.26 E-value=41 Score=24.03 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=21.9
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHh
Q 038550 125 SYNILIVGYSQTSDCSESLSLFSEMRL 151 (423)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 151 (423)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888888766
No 395
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=68.10 E-value=71 Score=26.74 Aligned_cols=161 Identities=12% Similarity=0.095 Sum_probs=78.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhc
Q 038550 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH-GGLVEKGKKYFDEMQADS-VKPTEMHYACMVDLLGRA 307 (423)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 307 (423)
+++.+-+.|+++++...++++...+...+..-.+.+-.+|-. .|....+++++..+.... -..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 455566778888888888888887666666655555555422 344455566666555441 1111 2222333333211
Q ss_pred ------CChHHHHHHHhhC--C--CCCCHhH-HHHHHHH----HHh--cC-----ChhHHHHHHHHHHh-----cCCCCc
Q 038550 308 ------GLMEDAVKLIKNL--P--VEPDANI-WGALLGA----CRI--YG-----NVELGAWAAEHLFM-----LKPQHC 360 (423)
Q Consensus 308 ------~~~~~a~~~~~~~--~--~~~~~~~-~~~l~~~----~~~--~~-----~~~~a~~~~~~~~~-----~~p~~~ 360 (423)
.--.+++.+++.. + ..+...+ |..+-.- .+. .| -.+.|...|+.+.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1122333444432 1 1111111 1111110 111 11 23667777777755 345555
Q ss_pred chHH----HHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 361 GYYI----LLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 361 ~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
.-.. .-+..|-..|+.++|.++.++..+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4322 223445678999999998888766544
No 396
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=67.59 E-value=36 Score=32.83 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=12.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 038550 229 TLILGYGMLGEVDTAINLFEAMRE 252 (423)
Q Consensus 229 ~li~~~~~~g~~~~a~~~~~~m~~ 252 (423)
.++.+|..+|++-.+.++++.+..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 445555555555555555555443
No 397
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=67.58 E-value=39 Score=27.27 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch-HHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY-YILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.....++..+...||++.|-++|.-+....+.|... |..=+..+.+.+.-....+.++.|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 345667788888888888888888888876655544 44444556666665555566666654
No 398
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.37 E-value=43 Score=23.93 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=14.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMRE 252 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~ 252 (423)
|..++.-|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 399
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=66.98 E-value=49 Score=24.41 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcC--CCCcchHHHHHHHHHhcCChhHHHHHHH
Q 038550 345 GAWAAEHLFMLK--PQHCGYYILLSNMYAEAGKWDEASKVRE 384 (423)
Q Consensus 345 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 384 (423)
...+|..+...+ .....+|...+..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456677776544 5556678888888888889888888875
No 400
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=66.17 E-value=35 Score=25.78 Aligned_cols=63 Identities=17% Similarity=0.125 Sum_probs=44.5
Q ss_pred hHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038550 310 MEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGK 375 (423)
Q Consensus 310 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 375 (423)
.+.|.++.+-|| ...............|++.-|..+.+.+...+|++.......+.+|...|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 356677777775 233444445667789999999999999999999999888888877765553
No 401
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.12 E-value=26 Score=20.58 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=19.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038550 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267 (423)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 267 (423)
+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 45555566666666666666666655555543
No 402
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=65.07 E-value=14 Score=31.69 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=19.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 038550 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVR 383 (423)
Q Consensus 338 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 383 (423)
+.|+.++|..+|+.+..+.|.++.....++......++.-+|-++|
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 3444444444444444444444444444443333333333333333
No 403
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=64.10 E-value=50 Score=23.50 Aligned_cols=86 Identities=13% Similarity=0.073 Sum_probs=47.0
Q ss_pred CCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHH
Q 038550 72 HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMR 150 (423)
Q Consensus 72 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 150 (423)
...++|..+.+.+...+. -...+--..+..+...|++++|...= ....||...|.+|- -.+.|--+++...+.++-
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHH
Confidence 345667777776666542 22333333445567778888883222 44556666665544 346777777777777776
Q ss_pred hcCCCCchhhH
Q 038550 151 LLGMKHDVVSF 161 (423)
Q Consensus 151 ~~~~~~~~~~~ 161 (423)
..| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 4544444
No 404
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.80 E-value=1.5e+02 Score=28.79 Aligned_cols=114 Identities=14% Similarity=0.089 Sum_probs=53.1
Q ss_pred CccHHHHHHHHHHcCCCCchHHHHHHH--HH-HHhcCChHHHHHHhchh---------cCCcchHHHHHHHHhcCC----
Q 038550 74 LRPGKEIHARIIRKGLNFDLFLTNALT--DM-YAKCGCLNLAQNVFNIS---------FRDEVSYNILIVGYSQTS---- 137 (423)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~g~~~~a~~~~~~~---------~~~~~~~~~l~~~~~~~~---- 137 (423)
...+..+++...+.|. ........++ .+ +....+.+.|...|+.. .-...+...+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 3456677777666652 1111111111 12 33445667777666211 113334555555555532
Q ss_pred -ChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh-HhhHHhhhHHHHHHHHhcc
Q 038550 138 -DCSESLSLFSEMRLLGMKHDVVSFMGAISACAN-LAAIKQGKEIHGVTIRKHL 189 (423)
Q Consensus 138 -~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~ 189 (423)
+.+.|+.++.+.-+.| .|+...+...+..... ..+...|.++|....+.|.
T Consensus 307 ~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred ccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 4455666666666555 3444333222222221 2344555666655555553
No 405
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.87 E-value=24 Score=20.69 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=16.6
Q ss_pred cCCCCccHHHHHHHHHHcCCCCchHHHHHHH
Q 038550 70 RGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100 (423)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (423)
+.|-++++..+++.|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555554443
No 406
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.30 E-value=33 Score=32.92 Aligned_cols=87 Identities=17% Similarity=0.028 Sum_probs=67.0
Q ss_pred HHhcCChHHHHHHHhhC-CCCC-C------HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038550 304 LGRAGLMEDAVKLIKNL-PVEP-D------ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGK 375 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~-~~~~-~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 375 (423)
..+..++..+.++|..- ..-| | ......|--+|....+.+.|.++++++.+.+|.++-....+.......|.
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 35667888888887643 2111 1 23456666778888999999999999999999998888888888889999
Q ss_pred hhHHHHHHHHHHhcc
Q 038550 376 WDEASKVRELMKSRE 390 (423)
Q Consensus 376 ~~~A~~~~~~m~~~~ 390 (423)
-++|+..+......-
T Consensus 444 Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 444 SEEALTCLQKIKSSE 458 (872)
T ss_pred hHHHHHHHHHHHhhh
Confidence 999999888776543
No 407
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.78 E-value=69 Score=24.35 Aligned_cols=81 Identities=14% Similarity=0.217 Sum_probs=56.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhccCc-HHHHHHHHHHHHHcCCCCChhhHHHH
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGV-----GYDPVSYIAILTACSHGGL-VEKGKKYFDEMQADSVKPTEMHYACM 300 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 300 (423)
.|.++......+++...+.+++.+..... ..+..+|..++.+..+..- .--+..+|.-+.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555666666666666666532110 2255678999999877665 44577888888887888999999999
Q ss_pred HHHHHhc
Q 038550 301 VDLLGRA 307 (423)
Q Consensus 301 ~~~~~~~ 307 (423)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 9887654
No 408
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=61.27 E-value=1.2e+02 Score=26.76 Aligned_cols=93 Identities=14% Similarity=0.052 Sum_probs=47.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHc----CCCCChhhHHHHHHHHH-----hcCChHHHHHHHhhCCC---CCCHhH
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQAD----SVKPTEMHYACMVDLLG-----RAGLMEDAVKLIKNLPV---EPDANI 328 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~---~~~~~~ 328 (423)
........||+.|+.+.|.+.+++..+. |.+.|...+..-+..+. -...+++|..++++-|. +.-..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 4555556677778877777776665543 55666554433222221 12335555556655431 111223
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 329 WGALLGACRIYGNVELGAWAAEHLFML 355 (423)
Q Consensus 329 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 355 (423)
|..+- +....++.+|-.+|-....-
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 33222 23445666666666555443
No 409
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.66 E-value=50 Score=25.13 Aligned_cols=63 Identities=8% Similarity=0.075 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcC
Q 038550 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207 (423)
Q Consensus 144 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 207 (423)
++.+.+++.|++++.. -..++..+...++.-.|..+++.+.+.++..+..|.-.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3455666777766653 33566777777666888888888888777766555555566666655
No 410
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.35 E-value=1.5e+02 Score=29.44 Aligned_cols=186 Identities=16% Similarity=0.163 Sum_probs=99.7
Q ss_pred hHHHHHHHHhccCcc---hHHHHHHHHHHHhcCCHHHHHHHhccCCC-CCh----------hhHHHHHHHHhccCCHHHH
Q 038550 178 KEIHGVTIRKHLHTH---LFVANSILDFYTRSGRIDLANKIFDCLPV-KDS----------ASWNTLILGYGMLGEVDTA 243 (423)
Q Consensus 178 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~----------~~~~~li~~~~~~g~~~~a 243 (423)
..++.+|+.+--.|+ ..+...++..|....+++...++.+.++. ||. ..|.-.+.---+-|+-++|
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 345666766433333 33445566677777888888887776652 211 1122222222345788888
Q ss_pred HHHHHHHHHcC--CCCCHH-----HHHHHH--HHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChHHH
Q 038550 244 INLFEAMREDG--VGYDPV-----SYIAIL--TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG-LMEDA 313 (423)
Q Consensus 244 ~~~~~~m~~~~--~~p~~~-----~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a 313 (423)
+.+.-.+.+.. +.||.. .|--+. +.|...+..+.|.+.|++..+ +.|+...=-.+...+...| .++..
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens 340 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENS 340 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccch
Confidence 88887777643 556643 232221 235556677888888888776 4555433211222222222 22222
Q ss_pred HHH------HhhC-CCCCCH---hH---HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHH
Q 038550 314 VKL------IKNL-PVEPDA---NI---WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 314 ~~~------~~~~-~~~~~~---~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 365 (423)
+++ +..+ |-+-.. .. ....+.+-.-..++.+|+...+.|.+++|+....-..
T Consensus 341 ~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~ 405 (1226)
T KOG4279|consen 341 LELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKST 405 (1226)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHH
Confidence 221 1111 111111 11 1223455667789999999999999999886544333
No 411
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.99 E-value=27 Score=21.90 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=14.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
--.+|.+|...|++++|.++++++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445566666666666666655543
No 412
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.94 E-value=65 Score=29.42 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=11.4
Q ss_pred HHHHHHhcCChHHHHHHHhhC
Q 038550 300 MVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~ 320 (423)
|++.++-.||+..|+++++.+
T Consensus 128 LlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHhccCHHHHHHHhhcc
Confidence 344455555666665555554
No 413
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.22 E-value=2.1e+02 Score=29.05 Aligned_cols=21 Identities=5% Similarity=0.184 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCHHHHHHHhcc
Q 038550 198 SILDFYTRSGRIDLANKIFDC 218 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~ 218 (423)
.++..+++.+.+++|++++..
T Consensus 535 ~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 535 FVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555443
No 414
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.75 E-value=1.4e+02 Score=27.42 Aligned_cols=197 Identities=8% Similarity=-0.010 Sum_probs=97.1
Q ss_pred hcCCChhhHHHHHHHHHhcCCCCchhh--HHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchH--HHHHHHHHHHhcCCH
Q 038550 134 SQTSDCSESLSLFSEMRLLGMKHDVVS--FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF--VANSILDFYTRSGRI 209 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~ 209 (423)
+..|+.+ +++.+.+.|..|+... ..+.+..++..|+.+- .+.+.+.|..|+.. .....+...+..|+.
T Consensus 10 ~~~g~~~----iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELD----IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 4456654 4555566787776532 2344455556666654 44445556544322 112345566788999
Q ss_pred HHHHHHhccCCCC----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCcHHHHHHHH
Q 038550 210 DLANKIFDCLPVK----DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV---SYIAILTACSHGGLVEKGKKYF 282 (423)
Q Consensus 210 ~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~ 282 (423)
+.+..+++.-... +..-.+ .+...+..|+. ++++.+.+.|..|+.. -.+. +...+..|+.+-+.
T Consensus 82 ~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v~--- 152 (413)
T PHA02875 82 KAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSP-LHLAVMMGDIKGIE--- 152 (413)
T ss_pred HHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHH---
Confidence 8888888754321 111122 23334456665 4455555667665432 2223 33344566665443
Q ss_pred HHHHHcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhH---HHHHHHHHHhcCChhHHHHHHH
Q 038550 283 DEMQADSVKPT---EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI---WGALLGACRIYGNVELGAWAAE 350 (423)
Q Consensus 283 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~ 350 (423)
.+.+.|..++ ..-.+.| ...+..|+.+-+.-+++ .|..++... ..+++......|+.+-+.-+++
T Consensus 153 -~Ll~~g~~~~~~d~~g~TpL-~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 153 -LLIDHKACLDIEDCCGCTPL-IIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred -HHHhcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 3444444333 2222233 33455677665544444 333343221 1244444556677765544444
No 415
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=58.60 E-value=1.2e+02 Score=26.16 Aligned_cols=147 Identities=8% Similarity=-0.066 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC------
Q 038550 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSH----GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG------ 308 (423)
Q Consensus 239 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------ 308 (423)
+...|..++..+.+.|.. .....+...|.. ..+..+|..+|+++.+.|..+.......+...|....
T Consensus 92 ~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 455566666655554432 222223333322 2355666666666666654332122222333333221
Q ss_pred -ChHHHHHHHhhCCCCCCHhHHHHHHHHHH----hcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---------
Q 038550 309 -LMEDAVKLIKNLPVEPDANIWGALLGACR----IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG--------- 374 (423)
Q Consensus 309 -~~~~a~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 374 (423)
+...|...+.++-..-+......+...|. -..+.++|...|.++.+.+. ......+. .+...|
T Consensus 169 ~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 169 YDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred HHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhc
Confidence 22245555555521223333333333332 23356666667766666655 33333333 333333
Q ss_pred ------ChhHHHHHHHHHHhccc
Q 038550 375 ------KWDEASKVRELMKSREA 391 (423)
Q Consensus 375 ------~~~~A~~~~~~m~~~~~ 391 (423)
+...|...+......+.
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCC
Confidence 55666666666665554
No 416
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=58.32 E-value=65 Score=24.51 Aligned_cols=63 Identities=10% Similarity=0.028 Sum_probs=44.3
Q ss_pred HHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 038550 45 LVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108 (423)
Q Consensus 45 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 108 (423)
+.+.+.+.|++++.. -..++..+.+.++.-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 445566677765544 345677777777779999999999998877766655555667777664
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=58.01 E-value=47 Score=22.85 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=18.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLK 356 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~ 356 (423)
+.......|+.++|...++++++.-
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4455667788888888888887753
No 418
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.00 E-value=1.6e+02 Score=27.27 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 038550 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272 (423)
Q Consensus 237 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 272 (423)
.++++.|+.++..|.+.|..|....-..++.++...
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 467888888888888877766655544444444333
No 419
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=57.98 E-value=1.3e+02 Score=26.23 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=10.4
Q ss_pred hhHHHHHHHHhccCCHHH
Q 038550 225 ASWNTLILGYGMLGEVDT 242 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~ 242 (423)
-+|..|+.+++..|+.+-
T Consensus 322 K~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSEL 339 (412)
T ss_pred HhhhHHHHHHhcCChHHH
Confidence 356666666666665543
No 420
>PF13934 ELYS: Nuclear pore complex assembly
Probab=57.54 E-value=1.1e+02 Score=25.40 Aligned_cols=55 Identities=13% Similarity=-0.031 Sum_probs=26.7
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 299 CMVDLLGRAGLMEDAVKLIKNLPVEP-DANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
.++.++...|+.+.|+.+++..+-.+ +......++.. ...+.+.+|..+.+...+
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPD 168 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCch
Confidence 35555555666666666666653222 22222222222 444566666555544433
No 421
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=57.49 E-value=23 Score=30.56 Aligned_cols=77 Identities=6% Similarity=0.028 Sum_probs=45.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 292 PTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGA-LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
-|...|...+..-.+.+.+.+.-.++.+. ...| |+..|-. --.-+...++++.+..++.+..+.+|++|..|....+
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 34444544444444445555555555554 3334 4444433 2233567788888888888888888888888765543
No 422
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=57.48 E-value=67 Score=22.87 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=17.4
Q ss_pred HHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038550 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252 (423)
Q Consensus 203 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 252 (423)
+...|+++.|...=.....||...|-+|-. .+.|-.+++...+.++..
T Consensus 50 LmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 50 LMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 444444444433322333334444433322 234444444444444433
No 423
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=56.27 E-value=1.2e+02 Score=25.40 Aligned_cols=114 Identities=14% Similarity=0.041 Sum_probs=70.6
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhcCChH
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVS-YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA-CMVDLLGRAGLME 311 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~ 311 (423)
|....+++.|+..|.+.+. +.|+..+ |+.-+.++.+..+++.+..=-...++ +.||...-. .+..++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 4455678888887766665 4676644 45556677788888888776666666 456644333 3445566777788
Q ss_pred HHHHHHhhC-------CCCCCHhHHHHHHHHHHhcCChhHHHHHHHH
Q 038550 312 DAVKLIKNL-------PVEPDANIWGALLGACRIYGNVELGAWAAEH 351 (423)
Q Consensus 312 ~a~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 351 (423)
+|+..+.+. .+.|-..++..|..+--..=...+..++.+.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 888777665 3455566676666654333334444444433
No 424
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=56.21 E-value=24 Score=29.07 Aligned_cols=53 Identities=26% Similarity=0.279 Sum_probs=24.5
Q ss_pred hcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 306 RAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
+.++.+.|.+++.+. ...| ....|-.+...-.+.|+++.|.+.|++..+++|+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 344444444444443 2223 3334444444444555555555555555555444
No 425
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.11 E-value=26 Score=30.16 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=24.1
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVG 256 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 256 (423)
-|+..|....+.||+++|+.++++..+.|+.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3667788788888888888888888887765
No 426
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=55.78 E-value=90 Score=28.57 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCC-----------CCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038550 197 NSILDFYTRSGRIDLANKIFDCLP-----------VKDSASWNTLILGYGMLGEVDTAINLFEAMR 251 (423)
Q Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (423)
-.|++.++-.|++..|+++++.+. .-.+.++--+.-+|...+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888887664 2245667778888899999999999998764
No 427
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=55.36 E-value=33 Score=21.78 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (423)
....++.++..+++..-.++++..+.++...| ..+..+|..-++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 33445555555555555555555555555554 2444444444444443
No 428
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.02 E-value=1.9e+02 Score=27.19 Aligned_cols=347 Identities=11% Similarity=0.022 Sum_probs=182.2
Q ss_pred CCChHHHHHHHhhchhC-CCCCC-----chhHHHHHHHhhcCC-CCccHHHHHHHHHHcCCCCchHHH---HHHHHHHHh
Q 038550 36 NRLELKALQLVREMPIH-NEFPN-----SVTLTNVLPACARGH-FLRPGKEIHARIIRKGLNFDLFLT---NALTDMYAK 105 (423)
Q Consensus 36 ~~~~~~a~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~ 105 (423)
..+++.|..-++..... ..-|+ -.++..+...+.... .+..+..++++.++..-....... --|+..+.-
T Consensus 60 T~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~i 139 (629)
T KOG2300|consen 60 TKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHII 139 (629)
T ss_pred hccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh
Confidence 44566665555543221 01122 235566666666655 789999999998865422112222 234566777
Q ss_pred cCChHHHHHHhch----hcCCcchHHHHHHH------Hh---cCCChhhHHHHHHHHHhcCCCCchhh------HH--HH
Q 038550 106 CGCLNLAQNVFNI----SFRDEVSYNILIVG------YS---QTSDCSESLSLFSEMRLLGMKHDVVS------FM--GA 164 (423)
Q Consensus 106 ~g~~~~a~~~~~~----~~~~~~~~~~l~~~------~~---~~~~~~~a~~~~~~m~~~~~~~~~~~------~~--~l 164 (423)
..++..|.+++.. ..+-...|..++.. +. +..++..+.....+|.+. ..+|... |. .-
T Consensus 140 dkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lq 218 (629)
T KOG2300|consen 140 DKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQ 218 (629)
T ss_pred hccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHH
Confidence 7899999999822 12222233322221 12 223455555556666654 3555432 11 11
Q ss_pred HHHHHhHhhHHhhhHHHHHHHHh---cc------------CcchHHHHHHHH----HH---------HhcCCHHHH----
Q 038550 165 ISACANLAAIKQGKEIHGVTIRK---HL------------HTHLFVANSILD----FY---------TRSGRIDLA---- 212 (423)
Q Consensus 165 l~~~~~~~~~~~a~~~~~~~~~~---~~------------~~~~~~~~~l~~----~~---------~~~~~~~~A---- 212 (423)
+.-|.-.|+...+...++++.+. +. .|.+..+..+.. ++ ...|-+++|
T Consensus 219 l~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~t 298 (629)
T KOG2300|consen 219 LSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYT 298 (629)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHH
Confidence 22334557777777777766542 11 122222211111 11 112334444
Q ss_pred ---HHHhccCCCCC--hhhH--------HHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCH-------HHHHHHHH-HHh
Q 038550 213 ---NKIFDCLPVKD--SASW--------NTLILGYGMLGEVDTAINLFEAMREDG-VGYDP-------VSYIAILT-ACS 270 (423)
Q Consensus 213 ---~~~~~~~~~~~--~~~~--------~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-------~~~~~ll~-~~~ 270 (423)
+...++.++.+ ...+ ..++-+-.-.|++.+|++-+..|.+-- -.|.+ .....++. .|+
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Confidence 44444444433 2222 222223334699999999999887632 12331 11233333 355
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHH------H--HHHH--HHh
Q 038550 271 HGGLVEKGKKYFDEMQADSVKPTEMHY--ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWG------A--LLGA--CRI 338 (423)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~--l~~~--~~~ 338 (423)
.-+-++.|+.-|....+.--..|...+ ..+...|.+.|+.+.--++++.++ .++..++. . ++.+ ...
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 678899999998888776333343332 234567888898888888888874 22221111 1 1122 357
Q ss_pred cCChhHHHHHHHHHHhcCC-CC-----cchHHHHHHHHHhcCChhHHHHHHH
Q 038550 339 YGNVELGAWAAEHLFMLKP-QH-----CGYYILLSNMYAEAGKWDEASKVRE 384 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~p-~~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 384 (423)
.+++.+|...+.+..+..- .+ .-....|...+...|+..++.....
T Consensus 458 qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccc
Confidence 8899999999999877651 11 1112344555666777777665544
No 429
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.98 E-value=26 Score=30.21 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhH
Q 038550 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161 (423)
Q Consensus 126 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 161 (423)
|+..|....+.||+++|+.++++.++.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 567777777778888888888887777765444444
No 430
>PRK09857 putative transposase; Provisional
Probab=54.88 E-value=91 Score=27.13 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCC
Q 038550 330 GALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394 (423)
Q Consensus 330 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 394 (423)
..++......++.++-..+++...+..|........++.-+...|.-++++++.++|...|...+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444556666666666666665555555666777777777777788888999988887644
No 431
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=54.43 E-value=31 Score=31.73 Aligned_cols=102 Identities=13% Similarity=-0.007 Sum_probs=71.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSY-IAILTACSHGGLVEKGKKYFDEMQADSVKPT-EMHYACMVDLLGRAG 308 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 308 (423)
...+...+.++.|..++.+.++. .||...| ..-..++.+.+++..|..=+..+++.. |+ ...|-.=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 45566788999999999999985 5655544 333478899999999998888887754 33 223333334455566
Q ss_pred ChHHHHHHHhhC-CCCCCHhHHHHHHHHH
Q 038550 309 LMEDAVKLIKNL-PVEPDANIWGALLGAC 336 (423)
Q Consensus 309 ~~~~a~~~~~~~-~~~~~~~~~~~l~~~~ 336 (423)
.+.+|+..|+.. .+.|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 777777777776 6788877777776555
No 432
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.20 E-value=47 Score=20.06 Aligned_cols=33 Identities=9% Similarity=0.088 Sum_probs=21.5
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHH
Q 038550 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM 162 (423)
Q Consensus 128 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 162 (423)
.+.-++.+.|+++.|.+..+.+++ +.|+.....
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHH
Confidence 345667788888888888888877 456654443
No 433
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=54.14 E-value=27 Score=21.87 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=17.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 364 ILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 364 ~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
..++.+|...|++++|.++++++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3566778888888888888877754
No 434
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=53.43 E-value=87 Score=22.91 Aligned_cols=57 Identities=18% Similarity=0.068 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCChhHH-------HHHHHHHHhcCCCCcchHHHH----HHHHHhcCChhHHHHHHHHH
Q 038550 330 GALLGACRIYGNVELG-------AWAAEHLFMLKPQHCGYYILL----SNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 330 ~~l~~~~~~~~~~~~a-------~~~~~~~~~~~p~~~~~~~~l----~~~~~~~g~~~~A~~~~~~m 386 (423)
..|-.++...|+++++ +.+|++--+++.+....|... +.++...|+.++|...|+..
T Consensus 59 A~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 59 AGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3344444445554443 334444444555555555433 34677788888888877653
No 435
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.36 E-value=1.9e+02 Score=29.44 Aligned_cols=131 Identities=16% Similarity=0.091 Sum_probs=87.6
Q ss_pred HHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 038550 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281 (423)
Q Consensus 202 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 281 (423)
....+|+++.|++.-..+. +..+|..|.......|+.+-|+..|+..+. |..|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3456788888887776665 667889999999999999999888887664 33333456677888877776
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355 (423)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 355 (423)
...+..+ .|..+. ...-.-.|+.++-..+++..|..|-... ....+|.-++|.++.++....
T Consensus 721 ~~iae~r---~D~~~~---~qnalYl~dv~ervkIl~n~g~~~layl------ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 721 MKIAEIR---NDATGQ---FQNALYLGDVKERVKILENGGQLPLAYL------TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHhh---hhhHHH---HHHHHHhccHHHHHHHHHhcCcccHHHH------HHhhcCcHHHHHHHHHhhccc
Confidence 6665543 232221 1112236888888888888874442211 124577788888888888663
No 436
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=53.23 E-value=18 Score=26.86 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=23.9
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038550 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268 (423)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 268 (423)
-..|.-.+|..+|++|++.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3456677889999999999988874 5666654
No 437
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=53.12 E-value=1.6e+02 Score=25.77 Aligned_cols=41 Identities=15% Similarity=0.338 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
++++.+.+.++.|.-..+..+.-.+...=.+.+.+.+|+.+
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl 304 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSL 304 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHH
Confidence 45555555555555555555544455555555555555554
No 438
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=52.76 E-value=1.1e+02 Score=26.26 Aligned_cols=94 Identities=9% Similarity=0.006 Sum_probs=58.3
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhhC-------CCCCCHhHHHHHHH---HHHhcCChhHHHHHHHHHHhcCCCC-
Q 038550 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNL-------PVEPDANIWGALLG---ACRIYGNVELGAWAAEHLFMLKPQH- 359 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~p~~- 359 (423)
.--...+..+...|++.++.+.+.+..++. |.+.|+ +-+.++ .|....-+++.++....+.+.+.+-
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv--~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV--FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh--HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 334567778889999999999999887654 344443 333333 3334444566777777777766431
Q ss_pred ----cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 360 ----CGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 360 ----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
..+|.-+ .+....++.+|-.++-+...
T Consensus 190 RrNRyK~Y~Gi--~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 190 RRNRYKVYKGI--FKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hhhhHHHHHHH--HHHHHHhhHHHHHHHHHHhc
Confidence 1223322 34556778888877776654
No 439
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.29 E-value=1.2e+02 Score=24.18 Aligned_cols=68 Identities=10% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCC--CHHHHHHHHHH-----HhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 240 VDTAINLFEAMREDGVGY--DPVSYIAILTA-----CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
.+.|+.+|+.+.+.--.| -......++.. |.+.|.+++|.+++++... .|+......-+....+..+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccc
No 440
>PRK13342 recombination factor protein RarA; Reviewed
Probab=52.23 E-value=2e+02 Score=26.64 Aligned_cols=43 Identities=21% Similarity=0.074 Sum_probs=26.4
Q ss_pred hHHHHHHHHhc---CCChhhHHHHHHHHHhcCCCCchhhHHHHHHH
Q 038550 125 SYNILIVGYSQ---TSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167 (423)
Q Consensus 125 ~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 167 (423)
.+..++.++.+ .++.+.|+..+.+|.+.|..|....-..++.+
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34445555544 46788888888888887766654444333333
No 441
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.71 E-value=67 Score=27.12 Aligned_cols=55 Identities=7% Similarity=-0.117 Sum_probs=27.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC------CCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKP------QHCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
+...|...|++++|.++++.+...-. ....+...+..++.+.|+.++.+.+-=++
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455555566666555555533211 11223344555666666666665554333
No 442
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=50.64 E-value=70 Score=27.22 Aligned_cols=57 Identities=23% Similarity=0.083 Sum_probs=43.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
+-..+...++++.|..+.++....+|.++.-+.--+.+|.+.|.+.-|++-++...+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 335677788888888888888888888887777777778888888777777766544
No 443
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=50.36 E-value=2.9e+02 Score=28.12 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=11.9
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHc
Q 038550 265 ILTACSHGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~ 288 (423)
++......|++++|...++++...
T Consensus 624 LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 624 LAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 344444455555555555554443
No 444
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=48.99 E-value=74 Score=28.77 Aligned_cols=59 Identities=20% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCChh---HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 328 IWGALLGACRIYGNVE---LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 328 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
+-..++..+...++.. +|.-+++......|.+..+-..++..|...|-.+.|...|..+
T Consensus 182 a~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 182 AAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
No 445
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=48.61 E-value=69 Score=20.37 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=27.1
Q ss_pred CCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 038550 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170 (423)
Q Consensus 121 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 170 (423)
+....++.++..+++..-.+.++..+.+..++|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3444556666666666666666666666666663 445555544444443
No 446
>PRK12798 chemotaxis protein; Reviewed
Probab=48.23 E-value=2.2e+02 Score=26.10 Aligned_cols=190 Identities=14% Similarity=0.113 Sum_probs=121.4
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCCChh-hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcH
Q 038550 198 SILDFYTRSGRIDLANKIFDCLPVKDSA-SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA-CSHGGLV 275 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~ 275 (423)
..+-....-|+++....++..-..++.. ....-+.+| -.|+..++.+.+..+.....++....|..|+.+ .....+.
T Consensus 86 Aa~iy~lSGGnP~vlr~L~~~d~~~~~d~~L~~g~laY-~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP 164 (421)
T PRK12798 86 AALIYLLSGGNPATLRKLLARDKLGNFDQRLADGALAY-LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDP 164 (421)
T ss_pred HHHhhHhcCCCHHHHHHHHHcCCCChhhHHHHHHHHHH-HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCH
Confidence 3444455667888877777766544322 112222333 368999999999998877777777788888776 5566789
Q ss_pred HHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHH----HhhCCCCCCHhHHHHHH-HHHHhcCChhHHH
Q 038550 276 EKGKKYFDEMQADSVKPTE----MHYACMVDLLGRAGLMEDAVKL----IKNLPVEPDANIWGALL-GACRIYGNVELGA 346 (423)
Q Consensus 276 ~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~ 346 (423)
.+|+++|+...-. .|.. .....-+-.....|+.++++.+ +++....|-..-|...+ .++.+.++-..-.
T Consensus 165 ~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~ 242 (421)
T PRK12798 165 ATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDA 242 (421)
T ss_pred HHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHH
Confidence 9999999998764 3432 2233334555788888887654 55665556554444433 3344444333333
Q ss_pred HHHHHHHhcCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 347 WAAEHLFMLKPQ-HCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 347 ~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.+.+.+..++|+ -..+|..+++.-.-.|+.+-|...-++.....
T Consensus 243 ~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 243 RLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 333333444543 34578888888889999999888888776654
No 447
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=48.22 E-value=45 Score=18.13 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=6.6
Q ss_pred HHHHHhcCChhHHHHH
Q 038550 367 SNMYAEAGKWDEASKV 382 (423)
Q Consensus 367 ~~~~~~~g~~~~A~~~ 382 (423)
+-.+-..|++++|+++
T Consensus 8 a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3334444444444444
No 448
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=47.93 E-value=1.3e+02 Score=23.63 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=33.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 250 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
+...|++++..-. .++..+....+.-.|.++++.+.+.+..++..|.-.-+..+...|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 4455666554432 34444444455667777777777776555555444444555555543
No 449
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=46.99 E-value=2.5e+02 Score=26.41 Aligned_cols=39 Identities=8% Similarity=-0.083 Sum_probs=31.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 334 GACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 334 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
-.|...|+.-.|.+.|.+.....-.+|..|..|+++|.-
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 356778888888888888888888888888888887753
No 450
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.99 E-value=2e+02 Score=25.18 Aligned_cols=71 Identities=13% Similarity=0.204 Sum_probs=52.5
Q ss_pred hHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhc----------cCCHHHHHHHH
Q 038550 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM----------LGEVDTAINLF 247 (423)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~a~~~~ 247 (423)
.++++.+...++.|.-..+.-+...+.+.=.+.+++.+|+.+... ..-|..++..||. .|++...++++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 467788888888898888888888888888889999999887742 2225555555553 58888877776
Q ss_pred HH
Q 038550 248 EA 249 (423)
Q Consensus 248 ~~ 249 (423)
+.
T Consensus 342 Q~ 343 (370)
T KOG4567|consen 342 QN 343 (370)
T ss_pred hc
Confidence 53
No 451
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.88 E-value=91 Score=21.24 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=15.8
Q ss_pred cCChHHHHHHhchhcCCcchHHHHHHHHhcCCCh
Q 038550 106 CGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDC 139 (423)
Q Consensus 106 ~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~ 139 (423)
.|+.+.|.+++...++.+..|..++.++...|.-
T Consensus 49 ~g~~~~ar~LL~~L~rg~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 49 HGNESGARELLKRIVQKEGWFSKFLQALRETEHH 82 (88)
T ss_pred cCcHHHHHHHHHHhccCCcHHHHHHHHHHHcCch
Confidence 3444555555522224444555555555444443
No 452
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.98 E-value=2e+02 Score=24.88 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=34.3
Q ss_pred HHHHhhcCCCCccHHHHHHHHHHcCCCCchHH-------HHHHHHHHHhcCChHHHHHHh
Q 038550 64 VLPACARGHFLRPGKEIHARIIRKGLNFDLFL-------TNALTDMYAKCGCLNLAQNVF 116 (423)
Q Consensus 64 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~a~~~~ 116 (423)
+.+-..+.+++++|...+.+++..|+..+..+ ...+...|.+.|+...-.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34445566777777777777777776555433 345667777888776655554
No 453
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.21 E-value=24 Score=30.95 Aligned_cols=89 Identities=8% Similarity=-0.036 Sum_probs=65.3
Q ss_pred HhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh-hHHHHHHHHHhHhhHHhhh
Q 038550 104 AKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV-SFMGAISACANLAAIKQGK 178 (423)
Q Consensus 104 ~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~ 178 (423)
...|.++.|++.| ...++....|..-.+++.+.+....|++-+..... +.||.. .|-.--.+....|+|+++.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHH
Confidence 3568889999988 44455666777778888999999999988888776 455543 4544455556678899999
Q ss_pred HHHHHHHHhccCcchH
Q 038550 179 EIHGVTIRKHLHTHLF 194 (423)
Q Consensus 179 ~~~~~~~~~~~~~~~~ 194 (423)
..+....+.+..+...
T Consensus 203 ~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 203 HDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHhccccHHHH
Confidence 9888888877665543
No 454
>PRK09462 fur ferric uptake regulator; Provisional
Probab=44.01 E-value=1.4e+02 Score=22.67 Aligned_cols=58 Identities=9% Similarity=0.107 Sum_probs=27.6
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038550 250 MREDGVGYDPVSYIAILTACSHG-GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308 (423)
Q Consensus 250 m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (423)
+.+.|++++..- ..++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 445555544332 2333334332 345566667766666654444444333334444444
No 455
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=43.69 E-value=2.2e+02 Score=24.70 Aligned_cols=254 Identities=11% Similarity=0.022 Sum_probs=0.0
Q ss_pred ccCCcchhHHhhcccCCcChhhHHHHHHHHHhCC-------ChHHHHHHHhhchhCCCCCCchhHHHHHHH----hhcCC
Q 038550 4 KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNR-------LELKALQLVREMPIHNEFPNSVTLTNVLPA----CARGH 72 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~----~~~~~ 72 (423)
+..++++|.++...-+.-+...+..+.+.+.+.. +++.-..+|+.--..-.+++...|..-+.. .....
T Consensus 8 ~~~df~~a~~ll~~~~~~~l~~L~~i~~~l~~l~~~~~~~i~~~~W~~~Fd~~WPlv~~~~~~yW~~R~~Fl~lLn~~~p 87 (292)
T PF13929_consen 8 SKQDFDEANKLLQSNPENSLDPLKSIVSTLSQLPQSTEKKINIENWKKFFDSHWPLVDPSETAYWSLRLKFLKLLNIADP 87 (292)
T ss_pred HHhhHHHHHHHHccCCcchhHHHHHHHHHHHhCccccccccCHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHhhcCc
Q ss_pred CCccHHHHHHHHH----HcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHH
Q 038550 73 FLRPGKEIHARII----RKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148 (423)
Q Consensus 73 ~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 148 (423)
..-....++.... ..|.+++..-...+++.....-...+.....+...+|... .+|+++|+.
T Consensus 88 ~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~V--------------v~aL~L~~~ 153 (292)
T PF13929_consen 88 QNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIV--------------VEALKLYDG 153 (292)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHH--------------HHHHHHhhc
Q ss_pred HHh-cCCCCchhhHHHHHHHHHh-----HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC--
Q 038550 149 MRL-LGMKHDVVSFMGAISACAN-----LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-- 220 (423)
Q Consensus 149 m~~-~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 220 (423)
... ..+--|......+++.... ..-+-+...++. ...+..++..+...++..+++.++|.+-.++++...
T Consensus 154 ~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~--~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~ 231 (292)
T PF13929_consen 154 LNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLV--STFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPN 231 (292)
T ss_pred cCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHH--hccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhccc
Q ss_pred ---CCChhhHHHHHHHHhccCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHHhccC
Q 038550 221 ---VKDSASWNTLILGYGMLGEVDTAINLFEA-----MREDGVGYDPVSYIAILTACSHGG 273 (423)
Q Consensus 221 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~~~~p~~~~~~~ll~~~~~~~ 273 (423)
..|...|..+|......|+..-...+..+ +++.++..+...-..+-..+.+.|
T Consensus 232 ~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~vd 292 (292)
T PF13929_consen 232 SVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKVD 292 (292)
T ss_pred CCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhcC
No 456
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.61 E-value=1.3e+02 Score=25.45 Aligned_cols=17 Identities=12% Similarity=0.034 Sum_probs=8.5
Q ss_pred HHHHhCCChHHHHHHHh
Q 038550 31 ANFAQNRLELKALQLVR 47 (423)
Q Consensus 31 ~~~~~~~~~~~a~~~~~ 47 (423)
++|...|++..|+.-|+
T Consensus 18 rl~l~~~~~~~Av~q~~ 34 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQFR 34 (247)
T ss_pred HHHHhCCCHHHHHHHHH
Confidence 44555555555554443
No 457
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=42.90 E-value=95 Score=22.09 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=9.9
Q ss_pred HHHHHhcCCChhhHHHHHHHH
Q 038550 129 LIVGYSQTSDCSESLSLFSEM 149 (423)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~m 149 (423)
++..|...++.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444445555555555443
No 458
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=42.68 E-value=1.1e+02 Score=20.96 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=18.2
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 350 EHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 350 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
+...+.+|.+......++..+...|++++|++.+-.+...
T Consensus 12 ~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 12 EAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3334444555445445555555555555555444444443
No 459
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=41.88 E-value=56 Score=20.50 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=25.6
Q ss_pred HHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHh-----hcCCCCccHHHH
Q 038550 33 FAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC-----ARGHFLRPGKEI 80 (423)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~ 80 (423)
+...|++-+|-++++.+-.....|....+..+|... .+.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 455777778888887776543333444555555542 234555544443
No 460
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.58 E-value=3e+02 Score=25.13 Aligned_cols=57 Identities=7% Similarity=0.008 Sum_probs=38.0
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCchh--hHHHHHHHHHh--HhhHHhhhHHHHHHHHh
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVV--SFMGAISACAN--LAAIKQGKEIHGVTIRK 187 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~--~~~~~~a~~~~~~~~~~ 187 (423)
+..+...+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455789999999999999887 555554 33344444432 34567788888776654
No 461
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=39.47 E-value=3.4e+02 Score=25.70 Aligned_cols=98 Identities=8% Similarity=-0.015 Sum_probs=71.0
Q ss_pred CCChhh-HHHHHHHHHhcCChHHHHHHHhhCC-C-CCCHhHHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCCcchHHH
Q 038550 291 KPTEMH-YACMVDLLGRAGLMEDAVKLIKNLP-V-EPDANIWGALLGAC--RIYGNVELGAWAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 291 ~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 365 (423)
.|+..+ -+.+++-+.+.|-..+|...+..+. . .|+...|..++..- ...-+...+..+|+.+......++..|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 455444 3556777788999999999999883 2 34777888887542 22334778888999987766588888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 038550 366 LSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
....-...|+.+.+-.++-+..+
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHhhccCCCcccccHHHHHHHH
Confidence 77777788988888887766543
No 462
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=39.37 E-value=1.5e+02 Score=22.08 Aligned_cols=38 Identities=13% Similarity=0.013 Sum_probs=28.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 335 ACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 335 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
.+...-+.+.|..+|+++++..|++..++..|+..+-.
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 34455567899999999999999999988888876644
No 463
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=38.99 E-value=3.2e+02 Score=26.14 Aligned_cols=92 Identities=10% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCCHh----HHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCc-------------
Q 038550 300 MVDLLGRAGLMEDAVKLIKNLPVEPDAN----IWGALLGACRIYGNVELGAWAAEHLFMLK--PQHC------------- 360 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~------------- 360 (423)
++.-|.+.+++++|..++..|....... ..+.+.+.+.+..-.++.+..++.+.... |..+
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d~V 493 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRDPV 493 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH
Q ss_pred -chHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 361 -GYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 361 -~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
..-..+...+.+.+++++|..+--++-..++
T Consensus 494 ~~~aRRfFhhLLR~~rfekAFlLAvdi~~~DL 525 (545)
T PF11768_consen 494 SDLARRFFHHLLRYQRFEKAFLLAVDIGDRDL 525 (545)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccchHH
No 464
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.77 E-value=1.7e+02 Score=22.19 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=39.2
Q ss_pred chhCCCCCCchhHHHHHHHhhcC-CCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCh
Q 038550 49 MPIHNEFPNSVTLTNVLPACARG-HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL 109 (423)
Q Consensus 49 m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 109 (423)
+.+.|++++..- ..++..+... +..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 445576654433 3445555543 56789999999999888666766655566677777654
No 465
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.75 E-value=2.3e+02 Score=23.53 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC---ChhhH--HHHHHHHHhcCChHHHHHHHhhCC---CCCCH
Q 038550 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMHY--ACMVDLLGRAGLMEDAVKLIKNLP---VEPDA 326 (423)
Q Consensus 255 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~ 326 (423)
+.+...-++.|+--|.-...+.+|...|.. ..|+.| +..++ ..-|......|++++|++.+..+. +.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 344445555555444444444444444433 224444 22222 234566678888888888887771 22232
Q ss_pred --hHHHHHHH--HHHhcCChhHHHHHHHHHHh
Q 038550 327 --NIWGALLG--ACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 327 --~~~~~l~~--~~~~~~~~~~a~~~~~~~~~ 354 (423)
..+...++ -..+.|..++|+++.+.-..
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 22222222 23566777777776665433
No 466
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=38.39 E-value=3.1e+02 Score=24.98 Aligned_cols=53 Identities=8% Similarity=-0.084 Sum_probs=29.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc------cCcHHHHHHHHHH
Q 038550 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH------GGLVEKGKKYFDE 284 (423)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~------~~~~~~a~~~~~~ 284 (423)
..+.+.+++..|.++|+++.+....|+...+..++..+++ .-++++|.+.++.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3455667777777777777776554444333222222222 3455566666654
No 467
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=38.23 E-value=2.3e+02 Score=24.67 Aligned_cols=112 Identities=10% Similarity=0.095 Sum_probs=56.3
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 038550 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278 (423)
Q Consensus 199 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 278 (423)
++..+.+.++.......+..+. ....-...++.+...|++..|++++.+..+.- . +..-|+.+=.. ..++++.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L---~~~L~e~ 176 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHL---SSQLQET 176 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHH---hHHHHHH
Confidence 4455555555555555555553 44445556677777888888888877766530 0 00111111110 0122222
Q ss_pred HHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038550 279 KKYFDEMQAD-----SVKPTEMHYACMVDLLGRAGLMEDAVKLI 317 (423)
Q Consensus 279 ~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (423)
....+++.+. -..-|+..|..+..+|.-.|+...+.+-+
T Consensus 177 ~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 177 LELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2222222221 01356667777777777777666555433
No 468
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=37.85 E-value=5e+02 Score=27.18 Aligned_cols=248 Identities=10% Similarity=-0.064 Sum_probs=130.3
Q ss_pred cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHH
Q 038550 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199 (423)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 199 (423)
.++...-...+..+.+.+. +.+...+.+..+ .++...-...+.++.+.+........+..++.. ++..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 4455555556666666665 334454555543 334444444455554443322222333333332 444444555
Q ss_pred HHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH-H
Q 038550 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK-G 278 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a 278 (423)
+.++...+.. ....+...+..+|...-...+.++.+.+..+. +..... .++...-.....++...+..+. +
T Consensus 705 ~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~ 776 (897)
T PRK13800 705 LDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPA 776 (897)
T ss_pred HHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchh
Confidence 5555544321 12234455566677666666777766554432 222222 3466666666667766665432 3
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
...+..+.. .++...-...+.++...|..+.+...+..+-..++..+-...+.++...+.. ++...+..+.+ -+
T Consensus 777 ~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~--D~ 850 (897)
T PRK13800 777 GDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPALVEALT--DP 850 (897)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHHHHHHhc--CC
Confidence 344444443 3566777778888888887665544343332256666666677777776653 44455544443 22
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 359 HCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
+.......+.++.+.+.-..+...+....+
T Consensus 851 ~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 851 HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 345555666667665333456666655544
No 469
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.84 E-value=3.2e+02 Score=25.02 Aligned_cols=58 Identities=21% Similarity=0.146 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhchhc-------CCcchHHHHHHHHhcCCChhhHHHHHHHHHh
Q 038550 94 FLTNALTDMYAKCGCLNLAQNVFNISF-------RDEVSYNILIVGYSQTSDCSESLSLFSEMRL 151 (423)
Q Consensus 94 ~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 151 (423)
..+.-+.+-|..+|+++.|.+.|.... ..+..|-.+|..-.-.|+|........+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345566667777777777777772211 1223355555555666666666666665554
No 470
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=37.77 E-value=2.4e+02 Score=23.60 Aligned_cols=59 Identities=7% Similarity=-0.080 Sum_probs=40.3
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHH-hHhhHHhhhHHHHHHHH
Q 038550 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA-NLAAIKQGKEIHGVTIR 186 (423)
Q Consensus 128 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 186 (423)
.++...-+.++++++...++++...+...+..--+.+-.+|- ..|....+.+++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 356677788899999999999988877777766666666663 34666666766666554
No 471
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=37.47 E-value=1.8e+02 Score=21.94 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=36.5
Q ss_pred CCChhhHHHHHHHHHhcCChH---HHHHHHhhC-C-CCCC--HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 291 KPTEMHYACMVDLLGRAGLME---DAVKLIKNL-P-VEPD--ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~-~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
.++..+--.+..++.+..+.+ +-+.+++.+ + -.|+ ....--|.-++.+.++++.+.++.+...+.+|++..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 344444444555555554433 333444444 1 1221 1122233445667777777777777777777766443
No 472
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=37.41 E-value=83 Score=22.39 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=11.2
Q ss_pred HHHHHHhcCCHHHHHHHhccCCC
Q 038550 199 ILDFYTRSGRIDLANKIFDCLPV 221 (423)
Q Consensus 199 l~~~~~~~~~~~~A~~~~~~~~~ 221 (423)
++.-|...++.++|...+.++..
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~~ 30 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELKL 30 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHhcCCCHHHHHHHHHHhCC
Confidence 44445555555555555555543
No 473
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=37.41 E-value=1.3e+02 Score=20.32 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=19.5
Q ss_pred cCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCH
Q 038550 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240 (423)
Q Consensus 206 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 240 (423)
..+.++|.++++.++.....+|..+..++...|..
T Consensus 43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETGQT 77 (84)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCch
Confidence 34455555566555555556666665555555443
No 474
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.95 E-value=3e+02 Score=24.37 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=8.1
Q ss_pred ccCcHHHHHHHHHHHHH
Q 038550 271 HGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 271 ~~~~~~~a~~~~~~~~~ 287 (423)
+.|+..+|.+.++++.+
T Consensus 287 klGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMK 303 (556)
T ss_pred HhhhHHHHHHHHHHHhh
Confidence 34455555555544443
No 475
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.81 E-value=2.6e+02 Score=23.64 Aligned_cols=88 Identities=13% Similarity=-0.027 Sum_probs=55.4
Q ss_pred HHHHHhcCChHHHHHHhch-----------hcC-----------CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCc
Q 038550 100 TDMYAKCGCLNLAQNVFNI-----------SFR-----------DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157 (423)
Q Consensus 100 ~~~~~~~g~~~~a~~~~~~-----------~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 157 (423)
.+-+.+.|++.+|..-|.. ..| ....+-.+-.++...|++-++++...+.+... +-+
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-~~n 263 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGN 263 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-Cch
Confidence 3446677888877776610 112 22234444566667777777777777777653 556
Q ss_pred hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhc
Q 038550 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKH 188 (423)
Q Consensus 158 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 188 (423)
...|..-..+....-+.++|..-|..++...
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 6677666667666667777777777766643
No 476
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.33 E-value=1.3e+02 Score=21.47 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=26.3
Q ss_pred HHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCh
Q 038550 64 VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL 109 (423)
Q Consensus 64 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 109 (423)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444455566777777776666555555544455555555543
No 477
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.03 E-value=96 Score=22.22 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=16.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 038550 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273 (423)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 273 (423)
..+..-.|.++++.+.+.+..++..|.-..|..+...|
T Consensus 12 ~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 12 ESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred hCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33444445555555555444444444333334444433
No 478
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=36.01 E-value=80 Score=17.48 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=21.5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 361 GYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.+|..|+..-...++|++|.+=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4577788888888888888877777654
No 479
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.77 E-value=1.6e+02 Score=23.13 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=29.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 038550 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275 (423)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 275 (423)
++..+...++.-.|.++++.+.+.+..++..|.-..|..+...|-+
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3444444556667888888888877666666555555666665543
No 480
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.70 E-value=2.6e+02 Score=23.26 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCC--ChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038550 198 SILDFYTRSGRIDLANKIFDCLPVK--DSASWNTLILGYGMLGEVDTAINLFEAMR 251 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (423)
.++.++...|+.+.|..+++....+ +......++.. ..++.+.+|...-+...
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence 4666666667777777777766543 22223333333 44566666666555443
No 481
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=34.12 E-value=5.8e+02 Score=26.83 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=24.5
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038550 271 HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321 (423)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (423)
.+.|+.+=+-+++++.+. +|+..-| -|+. ..+++++|++.+.++|
T Consensus 884 SQkDPKEYLPfL~~L~~l--~~~~rry--~ID~--hLkRy~kAL~~L~~~G 928 (928)
T PF04762_consen 884 SQKDPKEYLPFLQELQKL--PPLYRRY--KIDD--HLKRYEKALRHLSACG 928 (928)
T ss_pred hccChHHHHHHHHHHHhC--Chhheee--eHhh--hhCCHHHHHHHHHhhC
Confidence 345555555556665552 3333222 2232 3578888888776653
No 482
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=33.89 E-value=1.5e+02 Score=20.11 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
++|+-....|+..|..+|..++..+.-.=-++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444444455555555555555444433444444444444
No 483
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=33.60 E-value=1.4e+02 Score=19.50 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=30.3
Q ss_pred hcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhH
Q 038550 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 174 (423)
...++.+.+.+++++..+.|..|.......+.-+..+.|+.
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~ 52 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGEL 52 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 44688899999999999888777776666677777666643
No 484
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=33.50 E-value=2.6e+02 Score=22.61 Aligned_cols=178 Identities=12% Similarity=0.017 Sum_probs=0.0
Q ss_pred HhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC------------ChhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 038550 186 RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK------------DSASWNTLILGYGMLGEVDTAINLFEAMRED 253 (423)
Q Consensus 186 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 253 (423)
+.|...+...++.++..+.+..-...-...+-.++.+ +......-+..|-..|||.+
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~k----------- 69 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTK----------- 69 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHH-----------
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHH
Q 038550 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332 (423)
Q Consensus 254 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l 332 (423)
=...|..+-.+|.+.+++.+--....+..-. --......|..+...-++.-+.++ +.-.+-..+--++
T Consensus 70 ----lg~ly~nv~~gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e-------~dK~~LGRiGiS~ 138 (233)
T PF14669_consen 70 ----LGNLYINVKMGCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDE-------VDKTLLGRIGISL 138 (233)
T ss_pred ----HhhHHhhHHhhcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccch-------hhhhhhhHHHHHH
Q ss_pred HHHHHhcCChhHHHHHHHHHHh---------------cCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 333 LGACRIYGNVELGAWAAEHLFM---------------LKPQHCGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 333 ~~~~~~~~~~~~a~~~~~~~~~---------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
+..|.+..++.++.+++..+.+ ...+.....+..+..+.+.|..|-|..++++
T Consensus 139 m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 139 MYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 485
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.47 E-value=4.9e+02 Score=25.78 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=28.3
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHHcC--CCCchHHHHHHHHHHHhcCCh
Q 038550 63 NVLPACARGHFLRPGKEIHARIIRKG--LNFDLFLTNALTDMYAKCGCL 109 (423)
Q Consensus 63 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 109 (423)
+++.+|...|++-.+.++++...... -+.=...+|..++-..+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 66777777777777777777766442 112234455555555566554
No 486
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=33.40 E-value=2e+02 Score=21.28 Aligned_cols=58 Identities=16% Similarity=-0.007 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHH-HHHHHHHhcCChhHHHHHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWG-ALLGACRIYGNVELGAWAAEH 351 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~ 351 (423)
..+-.++..++.-.|..+.|.++++..+..++-...| .++..|....+.++...+-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3445556666666777777777777775555444333 355666666666555554444
No 487
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=33.16 E-value=5.9e+02 Score=26.65 Aligned_cols=246 Identities=11% Similarity=-0.006 Sum_probs=135.8
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHh--chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHH
Q 038550 90 NFDLFLTNALTDMYAKCGCLNLAQNVF--NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA 167 (423)
Q Consensus 90 ~~~~~~~~~l~~~~~~~g~~~~a~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 167 (423)
.+++.+....+..+.+.+..+ +...+ ....++...-...+.++.+.+........+..+.+ .+|...-...+.+
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~VR~~A~~a 707 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVVRAAALDV 707 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHHHHHHHHH
Confidence 566667777777777766543 33333 22233433434444444444322222233334443 2455555555566
Q ss_pred HHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHH-HHHH
Q 038550 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT-AINL 246 (423)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~ 246 (423)
+...+..+ ...+.. .. -.++..+-...+.++.+.+..+. +...+..++...-...+.++...+..+. +...
T Consensus 708 L~~~~~~~-~~~l~~-~L---~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~ 779 (897)
T PRK13800 708 LRALRAGD-AALFAA-AL---GDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDA 779 (897)
T ss_pred HHhhccCC-HHHHHH-Hh---cCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHH
Confidence 55443211 112222 22 23455555556666666554432 3334556677777777777777765443 3455
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCH
Q 038550 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA 326 (423)
Q Consensus 247 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 326 (423)
+..+.. .++...-...+.++...|..+.+...+..+.. .++..+-...+.++.+.+..+ +...+..+-..|+.
T Consensus 780 L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~~-a~~~L~~~L~D~~~ 852 (897)
T PRK13800 780 VRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAADV-AVPALVEALTDPHL 852 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccccc-hHHHHHHHhcCCCH
Confidence 555554 35777788888888888876655444555544 345556666777887777644 44444444337787
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 327 NIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
.+-...+.++.+.+....+...+..+.+
T Consensus 853 ~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 853 DVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 7777777887775444556666665555
No 488
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=32.99 E-value=4.7e+02 Score=25.48 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=13.6
Q ss_pred chhhHHHHHHHHHhHhhHHhhhHHHHHH
Q 038550 157 DVVSFMGAISACANLAAIKQGKEIHGVT 184 (423)
Q Consensus 157 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 184 (423)
+.....-++..|.+.|-.+.+..+.+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334445555555555555555555443
No 489
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=32.25 E-value=1.1e+02 Score=26.75 Aligned_cols=66 Identities=9% Similarity=-0.042 Sum_probs=52.7
Q ss_pred CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHH-HHHHHHhcCChhHHHHHHHHHHh
Q 038550 323 EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL-LSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 323 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
..|+..|...+.-..+.|-+.+.-.++.+.....|.+...|.. -..-|...++++.++.++.+-..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR 170 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR 170 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc
Confidence 3477888888877778888999999999999999999998865 34456778888888887765443
No 490
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=32.21 E-value=1.6e+02 Score=19.97 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038550 245 NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 245 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (423)
++|+-....|+..|+..|..++..+.-.--++...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 78888888899999999999988877777777778888877654
No 491
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.09 E-value=5.4e+02 Score=25.91 Aligned_cols=98 Identities=11% Similarity=0.135 Sum_probs=54.2
Q ss_pred HhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHh-hHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHH
Q 038550 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA-AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211 (423)
Q Consensus 133 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 211 (423)
|-..+..+.|...|++.-+ +.|+..+=..+...+...| .++...+ +...|+ .|-..+++.|.+++
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~E----lq~Igm--------kLn~LlgrKG~lek 362 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLE----LQQIGM--------KLNSLLGRKGALEK 362 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHH----HHHHHH--------HHHHHhhccchHHH
Confidence 4445566777888887765 5666553322332232222 2232222 222222 23445677888887
Q ss_pred HHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 038550 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253 (423)
Q Consensus 212 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 253 (423)
-..+|+ +.+| +.+-.-.+++.+|.+.-+.|.+.
T Consensus 363 lq~YWd------V~~y---~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 363 LQEYWD------VATY---FEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred HHHHHh------HHHh---hhhhhhccCHHHHHHHHHHHhcc
Confidence 777764 3333 33444567888888888888765
No 492
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.37 E-value=2.2e+02 Score=21.04 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCCCCc-hhhHHHHHHHHHhHhhHHhhhHHHHH
Q 038550 141 ESLSLFSEMRLLGMKHD-VVSFMGAISACANLAAIKQGKEIHGV 183 (423)
Q Consensus 141 ~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 183 (423)
.+.++|..|..+|+-.. +..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777777665443 33455555666666666666666654
No 493
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=30.93 E-value=3.2e+02 Score=23.03 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=10.6
Q ss_pred HhccCcHHHHHHHHHHHHHc
Q 038550 269 CSHGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~ 288 (423)
+.+.++.+.+..+.+-+.+.
T Consensus 202 ~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 202 LLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHTCHHHHHHHHHHHHHC
T ss_pred HHhcccHHHHHHHHHHHHHh
Confidence 33335555665555555543
No 494
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=30.49 E-value=3.9e+02 Score=23.72 Aligned_cols=106 Identities=8% Similarity=0.035 Sum_probs=58.7
Q ss_pred HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC--ChhhH--HHHHHHHhccCCHHHHHHH
Q 038550 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK--DSASW--NTLILGYGMLGEVDTAINL 246 (423)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~--~~li~~~~~~g~~~~a~~~ 246 (423)
..-+.+|+++++..++.+- .+|+ ++.+...--...+.+.+. ++.+| ..+.-+..+.|+..+|.+.
T Consensus 229 a~Ti~~AE~l~k~ALka~e----~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAGE----TIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred hhhHHHHHHHHHHHHHHHH----HHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 3456677788877776542 1221 111111111112222222 44444 3344455678999999999
Q ss_pred HHHHHHcCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038550 247 FEAMREDGVGYDP---VSYIAILTACSHGGLVEKGKKYFDEMQADS 289 (423)
Q Consensus 247 ~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 289 (423)
++++.+. .|-. .....++.+|....-+.+...++-+.-+..
T Consensus 298 ~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 298 MRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9997764 2222 234567888888777777776666655443
No 495
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=30.40 E-value=1e+02 Score=22.30 Aligned_cols=43 Identities=5% Similarity=0.172 Sum_probs=19.9
Q ss_pred HHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH
Q 038550 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171 (423)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 171 (423)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 55 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEA 55 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHC
Confidence 3344444444555566666666555444544444444444333
No 496
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=30.20 E-value=3.9e+02 Score=23.66 Aligned_cols=97 Identities=8% Similarity=0.013 Sum_probs=57.2
Q ss_pred CcchHHHHHHHHHHHhcCC------------HHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 038550 190 HTHLFVANSILDFYTRSGR------------IDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDG 254 (423)
Q Consensus 190 ~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 254 (423)
+.|+.+|-.++..--..-. .+.-+.++++.. +.+...+..++..+.+..+.+...+.|+++....
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3456666666654322211 233444555543 2355667777888888888888888898888763
Q ss_pred CCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHHHH
Q 038550 255 VGYDPVSYIAILTACSH---GGLVEKGKKYFDEMQA 287 (423)
Q Consensus 255 ~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~ 287 (423)
.. +...|...|..... .-.++....+|.+..+
T Consensus 96 ~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 96 PG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred CC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 22 56666666655433 2345555555555443
No 497
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=30.15 E-value=1.4e+02 Score=21.55 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=31.2
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCh
Q 038550 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL 109 (423)
Q Consensus 62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 109 (423)
..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 345566666666888888888888877777766554555666666643
No 498
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=30.02 E-value=1.3e+02 Score=21.57 Aligned_cols=44 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 038550 63 NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG 107 (423)
Q Consensus 63 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 107 (423)
+++..+.+....++|+++++.|.++| ..+...-+.|-..+.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKKG 109 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhh
No 499
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=29.96 E-value=4.2e+02 Score=23.98 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=16.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhcc
Q 038550 192 HLFVANSILDFYTRSGRIDLANKIFDC 218 (423)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (423)
.+.++-.+...+...|+.+.|.+++++
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleR 65 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLER 65 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455556667777777777666654
No 500
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=29.61 E-value=4.2e+02 Score=24.57 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=29.0
Q ss_pred HhhCCCCCCH--hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 317 IKNLPVEPDA--NIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 317 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
|....+.|.. .++..-+..+.+.+++..|-.+.++++++.|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 4444455533 356667777889999999999999999998764
Done!