Query 038550
Match_columns 423
No_of_seqs 596 out of 1950
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 21:14:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 7.9E-38 2.7E-42 299.3 34.3 392 2-400 127-588 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7.1E-37 2.4E-41 292.7 31.9 378 3-389 64-504 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-30 6E-35 234.9 36.0 365 4-374 11-387 (388)
4 4g26_A Pentatricopeptide repea 100.0 3.2E-32 1.1E-36 250.6 22.6 211 41-272 8-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-29 3.8E-34 229.6 35.6 365 29-401 5-378 (388)
6 4g26_A Pentatricopeptide repea 100.0 2.3E-30 7.9E-35 238.3 20.0 184 23-206 26-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 9.9E-26 3.4E-30 211.4 30.6 383 2-390 16-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 3.6E-24 1.2E-28 197.4 33.8 297 21-324 24-360 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 3.4E-24 1.2E-28 197.5 31.7 339 41-386 10-406 (450)
10 2gw1_A Mitochondrial precursor 99.9 9.6E-25 3.3E-29 204.7 27.7 360 2-366 49-489 (514)
11 3fp2_A TPR repeat-containing p 99.9 3.2E-24 1.1E-28 202.3 30.6 362 23-391 25-493 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 6.5E-21 2.2E-25 169.9 31.0 305 57-389 2-335 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 7E-21 2.4E-25 169.7 31.1 323 22-372 2-352 (359)
14 3fp2_A TPR repeat-containing p 99.9 1.2E-21 4E-26 184.8 26.4 358 2-365 35-501 (537)
15 3hym_B Cell division cycle pro 99.9 9E-20 3.1E-24 160.6 29.3 286 56-376 20-321 (330)
16 1b89_A Protein (clathrin heavy 99.9 1.5E-20 5.2E-25 165.4 23.2 352 3-390 14-386 (449)
17 3hym_B Cell division cycle pro 99.9 1.2E-19 4.1E-24 159.8 27.4 280 117-402 16-310 (330)
18 1fch_A Peroxisomal targeting s 99.9 1.8E-19 6.2E-24 161.3 26.4 283 33-318 35-354 (368)
19 1fch_A Peroxisomal targeting s 99.9 7.2E-20 2.5E-24 163.9 23.6 262 123-387 64-357 (368)
20 2xm6_A Protein corresponding t 99.9 1.1E-17 3.6E-22 155.7 38.7 360 12-391 27-434 (490)
21 4eqf_A PEX5-related protein; a 99.8 7E-20 2.4E-24 163.9 20.4 261 122-385 64-352 (365)
22 4g1t_A Interferon-induced prot 99.8 1.1E-18 3.9E-23 161.6 28.6 367 22-400 50-470 (472)
23 2xm6_A Protein corresponding t 99.8 4.6E-18 1.6E-22 158.2 32.2 362 5-386 56-464 (490)
24 4eqf_A PEX5-related protein; a 99.8 4.2E-19 1.4E-23 158.8 21.0 260 56-319 63-352 (365)
25 3mkr_A Coatomer subunit epsilo 99.8 3.2E-18 1.1E-22 147.3 24.6 267 103-382 9-287 (291)
26 2ooe_A Cleavage stimulation fa 99.8 8.3E-17 2.8E-21 151.2 36.0 381 4-390 24-493 (530)
27 3cv0_A Peroxisome targeting si 99.8 1.7E-18 5.9E-23 152.1 21.7 260 125-388 23-314 (327)
28 2ooe_A Cleavage stimulation fa 99.8 1.3E-16 4.5E-21 149.8 33.7 364 21-390 11-455 (530)
29 3cv0_A Peroxisome targeting si 99.8 2.1E-17 7.3E-22 145.1 25.2 264 22-320 20-312 (327)
30 1b89_A Protein (clathrin heavy 99.8 2.5E-19 8.5E-24 157.8 11.7 240 105-373 15-254 (449)
31 3mkr_A Coatomer subunit epsilo 99.8 1.2E-17 4.1E-22 143.8 20.5 247 130-390 6-265 (291)
32 1xi4_A Clathrin heavy chain; a 99.8 6.5E-16 2.2E-20 151.6 30.6 284 64-384 1055-1340(1630)
33 1xi4_A Clathrin heavy chain; a 99.8 4E-15 1.4E-19 146.2 33.4 332 3-374 1060-1415(1630)
34 4g1t_A Interferon-induced prot 99.7 2.4E-16 8.2E-21 146.0 23.5 352 2-367 61-471 (472)
35 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-17 3.8E-22 159.1 12.7 111 225-335 128-245 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 2.3E-18 8E-23 163.7 8.0 120 192-311 126-253 (1134)
37 3uq3_A Heat shock protein STI1 99.7 2.1E-16 7.3E-21 133.7 18.3 229 125-390 7-237 (258)
38 2pl2_A Hypothetical conserved 99.7 3.5E-16 1.2E-20 128.7 18.9 195 191-387 3-212 (217)
39 3uq3_A Heat shock protein STI1 99.7 7.1E-16 2.4E-20 130.4 21.2 194 196-400 8-211 (258)
40 3u4t_A TPR repeat-containing p 99.7 1.9E-15 6.5E-20 129.0 21.4 241 129-372 9-267 (272)
41 3e4b_A ALGK; tetratricopeptide 99.7 4E-16 1.4E-20 143.0 18.0 371 3-389 14-421 (452)
42 3e4b_A ALGK; tetratricopeptide 99.7 7.1E-15 2.4E-19 134.7 25.8 343 28-391 8-389 (452)
43 1xnf_A Lipoprotein NLPI; TPR, 99.7 3.4E-15 1.2E-19 127.6 19.7 242 134-383 16-269 (275)
44 2pl2_A Hypothetical conserved 99.7 5.1E-15 1.7E-19 121.7 18.9 194 122-320 4-211 (217)
45 2h6f_A Protein farnesyltransfe 99.7 1.3E-14 4.4E-19 129.1 21.2 244 124-371 98-364 (382)
46 1ouv_A Conserved hypothetical 99.7 1.1E-13 3.8E-18 118.2 25.6 225 122-391 5-253 (273)
47 2ho1_A Type 4 fimbrial biogene 99.6 2.5E-14 8.5E-19 120.6 20.6 191 198-389 42-238 (252)
48 2q7f_A YRRB protein; TPR, prot 99.6 9.1E-15 3.1E-19 122.4 17.4 190 198-389 28-222 (243)
49 2ho1_A Type 4 fimbrial biogene 99.6 7.4E-14 2.5E-18 117.6 22.9 208 123-364 37-247 (252)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 2E-14 6.7E-19 122.8 19.6 215 34-253 16-244 (275)
51 2q7f_A YRRB protein; TPR, prot 99.6 1.3E-14 4.4E-19 121.5 18.1 207 161-370 26-237 (243)
52 1ouv_A Conserved hypothetical 99.6 1.3E-13 4.3E-18 117.8 24.1 226 91-359 4-255 (273)
53 2h6f_A Protein farnesyltransfe 99.6 3.5E-15 1.2E-19 132.7 14.6 245 158-408 97-365 (382)
54 2vq2_A PILW, putative fimbrial 99.6 8.2E-14 2.8E-18 115.0 22.0 194 195-389 10-211 (225)
55 4a1s_A PINS, partner of inscut 99.6 5.4E-15 1.9E-19 134.2 15.9 260 129-389 54-372 (411)
56 3u4t_A TPR repeat-containing p 99.6 1.2E-13 4.2E-18 117.7 23.0 236 95-332 5-261 (272)
57 2vq2_A PILW, putative fimbrial 99.6 1.7E-13 5.8E-18 113.1 22.6 203 162-366 12-222 (225)
58 3sf4_A G-protein-signaling mod 99.6 8.9E-15 3E-19 132.4 15.3 269 91-359 7-340 (406)
59 3vtx_A MAMA; tetratricopeptide 99.6 7.9E-14 2.7E-18 111.4 19.2 166 223-390 4-171 (184)
60 3ro2_A PINS homolog, G-protein 99.6 2.7E-14 9.3E-19 125.5 16.8 261 128-389 10-332 (338)
61 3sf4_A G-protein-signaling mod 99.6 5.7E-14 1.9E-18 127.1 18.1 269 25-320 11-333 (406)
62 4abn_A Tetratricopeptide repea 99.6 2.6E-14 8.9E-19 131.8 15.7 210 173-386 83-318 (474)
63 4a1s_A PINS, partner of inscut 99.5 2.7E-13 9.2E-18 123.0 18.5 271 60-357 50-374 (411)
64 3ro2_A PINS homolog, G-protein 99.5 4.9E-13 1.7E-17 117.4 17.4 280 26-358 8-335 (338)
65 3vtx_A MAMA; tetratricopeptide 99.5 6.2E-13 2.1E-17 106.1 16.4 166 193-360 5-175 (184)
66 3ulq_A Response regulator aspa 99.5 2.5E-12 8.6E-17 115.5 22.0 195 160-354 145-367 (383)
67 3ulq_A Response regulator aspa 99.5 1.1E-12 3.7E-17 117.9 19.2 227 164-391 109-370 (383)
68 2ond_A Cleavage stimulation fa 99.5 1.6E-11 5.5E-16 106.6 25.3 218 140-360 33-275 (308)
69 4gyw_A UDP-N-acetylglucosamine 99.5 8.8E-13 3E-17 126.5 18.5 165 223-389 8-174 (723)
70 3nf1_A KLC 1, kinesin light ch 99.5 5.5E-14 1.9E-18 122.2 9.0 236 122-388 26-306 (311)
71 3as5_A MAMA; tetratricopeptide 99.5 2E-12 6.7E-17 103.1 16.9 161 228-390 12-174 (186)
72 3nf1_A KLC 1, kinesin light ch 99.5 2.4E-13 8.4E-18 118.1 11.6 245 90-358 24-310 (311)
73 1hz4_A MALT regulatory protein 99.5 6.6E-11 2.2E-15 105.8 27.5 259 131-389 22-322 (373)
74 2ond_A Cleavage stimulation fa 99.5 4.3E-11 1.5E-15 103.9 25.0 209 75-287 33-269 (308)
75 4e6h_A MRNA 3'-END-processing 99.5 1.3E-10 4.5E-15 110.3 29.9 369 21-392 64-573 (679)
76 3q15_A PSP28, response regulat 99.4 1.4E-11 4.8E-16 110.3 20.6 219 169-388 112-364 (378)
77 4abn_A Tetratricopeptide repea 99.4 9.9E-12 3.4E-16 114.6 18.5 190 92-285 101-318 (474)
78 4i17_A Hypothetical protein; T 99.4 8.2E-12 2.8E-16 103.4 16.2 189 193-390 7-210 (228)
79 3as5_A MAMA; tetratricopeptide 99.4 3.6E-11 1.2E-15 95.6 19.1 168 193-362 8-180 (186)
80 4i17_A Hypothetical protein; T 99.4 3.4E-11 1.2E-15 99.6 18.7 205 155-369 4-223 (228)
81 3q15_A PSP28, response regulat 99.4 1.3E-10 4.3E-15 104.2 23.5 195 160-355 143-365 (378)
82 1hz4_A MALT regulatory protein 99.3 4.4E-10 1.5E-14 100.4 24.5 261 26-286 17-320 (373)
83 4e6h_A MRNA 3'-END-processing 99.3 3.2E-09 1.1E-13 100.8 29.7 356 4-362 78-577 (679)
84 1qqe_A Vesicular transport pro 99.3 4.8E-11 1.6E-15 102.7 13.9 163 225-387 78-267 (292)
85 4gyw_A UDP-N-acetylglucosamine 99.3 8.7E-11 3E-15 112.8 16.2 163 22-187 8-174 (723)
86 3mv2_B Coatomer subunit epsilo 99.3 1.1E-09 3.9E-14 92.5 21.1 179 177-362 85-289 (310)
87 3edt_B KLC 2, kinesin light ch 99.3 2E-11 6.7E-16 104.3 10.4 153 134-286 12-196 (283)
88 1qqe_A Vesicular transport pro 99.3 1.2E-10 4E-15 100.3 14.7 245 75-361 2-275 (292)
89 2fo7_A Synthetic consensus TPR 99.2 3E-10 1E-14 84.9 15.1 128 262-390 4-133 (136)
90 3edt_B KLC 2, kinesin light ch 99.2 1.7E-10 5.8E-15 98.4 14.7 145 175-319 25-194 (283)
91 4ga2_A E3 SUMO-protein ligase 99.2 2.7E-11 9.2E-16 92.9 7.7 141 232-375 5-149 (150)
92 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.8E-09 6.1E-14 89.0 18.8 181 195-391 6-215 (225)
93 3qky_A Outer membrane assembly 99.2 5.7E-10 2E-14 94.3 15.8 164 198-362 20-231 (261)
94 3qky_A Outer membrane assembly 99.2 7.4E-10 2.5E-14 93.6 15.9 169 221-390 12-225 (261)
95 3qou_A Protein YBBN; thioredox 99.2 5.4E-10 1.8E-14 95.8 15.0 172 214-388 107-283 (287)
96 2pzi_A Probable serine/threoni 99.2 7.7E-11 2.6E-15 113.6 10.4 169 204-375 402-583 (681)
97 2fo7_A Synthetic consensus TPR 99.2 1.8E-09 6.2E-14 80.6 15.8 131 226-358 3-135 (136)
98 3mv2_B Coatomer subunit epsilo 99.1 7.3E-09 2.5E-13 87.6 19.1 175 212-390 85-283 (310)
99 2vsy_A XCC0866; transferase, g 99.1 1.3E-09 4.4E-14 103.1 15.4 160 206-367 2-169 (568)
100 2r5s_A Uncharacterized protein 99.1 7.1E-10 2.4E-14 87.5 11.1 157 229-388 11-172 (176)
101 4ga2_A E3 SUMO-protein ligase 99.1 2.4E-10 8.3E-15 87.5 8.0 124 265-389 3-129 (150)
102 3rjv_A Putative SEL1 repeat pr 99.1 1E-08 3.6E-13 83.4 18.0 161 223-391 17-199 (212)
103 2uy1_A Cleavage stimulation fa 99.0 2.6E-07 8.7E-12 85.2 27.4 355 4-388 6-412 (493)
104 3urz_A Uncharacterized protein 99.0 4.4E-09 1.5E-13 85.4 14.0 181 160-359 6-190 (208)
105 2vsy_A XCC0866; transferase, g 99.0 5.4E-09 1.8E-13 98.9 16.1 147 171-320 2-154 (568)
106 3u3w_A Transcriptional activat 99.0 7.4E-08 2.5E-12 82.7 21.5 161 229-389 80-266 (293)
107 2pzi_A Probable serine/threoni 99.0 1.2E-08 4E-13 98.4 18.2 169 169-341 402-583 (681)
108 2uy1_A Cleavage stimulation fa 99.0 2.2E-07 7.6E-12 85.6 25.5 337 6-354 28-412 (493)
109 3dra_A Protein farnesyltransfe 99.0 5.5E-07 1.9E-11 76.9 25.7 225 139-367 49-300 (306)
110 2ifu_A Gamma-SNAP; membrane fu 99.0 1.6E-08 5.3E-13 87.6 16.5 217 136-381 4-253 (307)
111 3urz_A Uncharacterized protein 99.0 1.5E-08 5.2E-13 82.2 15.4 132 129-264 60-195 (208)
112 3gyz_A Chaperone protein IPGC; 99.0 2.5E-09 8.7E-14 81.5 10.0 97 294-390 36-134 (151)
113 4gco_A Protein STI-1; structur 99.0 6.7E-09 2.3E-13 76.7 11.8 107 261-368 15-123 (126)
114 3dra_A Protein farnesyltransfe 99.0 9.4E-08 3.2E-12 81.6 20.0 212 174-388 49-286 (306)
115 2r5s_A Uncharacterized protein 99.0 1.2E-08 4E-13 80.5 13.4 154 198-354 11-172 (176)
116 3qou_A Protein YBBN; thioredox 99.0 8.3E-09 2.8E-13 88.3 13.3 135 256-391 114-250 (287)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.8E-08 9.6E-13 80.8 14.9 130 225-359 7-154 (213)
118 2yhc_A BAMD, UPF0169 lipoprote 98.9 5.5E-08 1.9E-12 80.0 16.2 186 157-362 3-220 (225)
119 1a17_A Serine/threonine protei 98.9 3E-08 1E-12 77.0 13.9 129 260-389 14-146 (166)
120 3rjv_A Putative SEL1 repeat pr 98.9 5.1E-08 1.7E-12 79.3 15.5 174 9-191 3-201 (212)
121 2vgx_A Chaperone SYCD; alterna 98.9 3E-09 1E-13 81.1 7.6 96 294-389 21-118 (148)
122 2c2l_A CHIP, carboxy terminus 98.9 5.5E-09 1.9E-13 89.1 9.8 191 195-390 6-200 (281)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1E-07 3.5E-12 77.5 17.0 129 196-326 9-154 (213)
124 4gco_A Protein STI-1; structur 98.9 1.5E-08 5E-13 74.8 10.6 97 294-390 13-111 (126)
125 1na0_A Designed protein CTPR3; 98.9 7.1E-08 2.4E-12 70.6 13.5 115 259-374 9-125 (125)
126 1p5q_A FKBP52, FK506-binding p 98.9 3E-08 1E-12 86.9 12.9 128 261-388 149-293 (336)
127 2qfc_A PLCR protein; TPR, HTH, 98.8 8.9E-08 3.1E-12 82.2 15.4 163 226-388 77-265 (293)
128 2vyi_A SGTA protein; chaperone 98.8 6.4E-08 2.2E-12 71.5 12.7 117 259-376 12-130 (131)
129 2e2e_A Formate-dependent nitri 98.8 2E-08 6.7E-13 79.2 10.0 128 234-363 20-152 (177)
130 2lni_A Stress-induced-phosphop 98.8 5.9E-08 2E-12 72.1 11.9 115 259-374 16-132 (133)
131 2vgx_A Chaperone SYCD; alterna 98.8 1.4E-08 4.8E-13 77.4 7.1 107 258-365 20-128 (148)
132 2xcb_A PCRH, regulatory protei 98.8 6E-08 2.1E-12 73.3 10.4 91 299-389 23-115 (142)
133 3u3w_A Transcriptional activat 98.8 1.2E-06 4.1E-11 75.1 19.8 157 199-355 81-266 (293)
134 2ifu_A Gamma-SNAP; membrane fu 98.8 6.4E-08 2.2E-12 83.7 11.7 196 170-387 3-222 (307)
135 3gyz_A Chaperone protein IPGC; 98.7 1.2E-07 4E-12 72.2 11.6 101 259-360 36-138 (151)
136 2e2e_A Formate-dependent nitri 98.7 8.4E-08 2.9E-12 75.5 11.0 122 269-391 20-146 (177)
137 3upv_A Heat shock protein STI1 98.7 6.5E-08 2.2E-12 71.3 9.8 93 297-389 7-101 (126)
138 2fbn_A 70 kDa peptidylprolyl i 98.7 9.3E-09 3.2E-13 82.8 5.4 96 295-390 89-187 (198)
139 2kck_A TPR repeat; tetratricop 98.7 1.1E-07 3.8E-12 68.1 10.6 99 293-391 5-108 (112)
140 3gw4_A Uncharacterized protein 98.7 2.3E-07 8E-12 74.6 13.3 153 236-389 4-176 (203)
141 4f3v_A ESX-1 secretion system 98.7 6.1E-07 2.1E-11 74.9 15.8 150 135-286 18-198 (282)
142 3q7a_A Farnesyltransferase alp 98.7 1.6E-05 5.5E-10 68.6 25.0 173 134-310 65-258 (349)
143 1hxi_A PEX5, peroxisome target 98.7 7E-08 2.4E-12 70.6 8.5 95 296-390 19-115 (121)
144 3upv_A Heat shock protein STI1 98.7 1.9E-07 6.6E-12 68.7 11.0 110 260-370 5-122 (126)
145 2xcb_A PCRH, regulatory protei 98.7 1.1E-07 3.8E-12 71.8 9.7 106 260-366 19-126 (142)
146 3sz7_A HSC70 cochaperone (SGT) 98.7 6.5E-07 2.2E-11 69.4 14.4 109 258-367 10-120 (164)
147 4gcn_A Protein STI-1; structur 98.7 7.3E-08 2.5E-12 71.2 8.2 92 297-388 11-111 (127)
148 2lni_A Stress-induced-phosphop 98.7 2.9E-07 1E-11 68.2 11.6 100 291-390 13-114 (133)
149 3sz7_A HSC70 cochaperone (SGT) 98.7 1.3E-07 4.5E-12 73.3 10.0 98 293-390 10-109 (164)
150 1elw_A TPR1-domain of HOP; HOP 98.7 5.7E-07 2E-11 64.9 12.6 107 261-368 6-114 (118)
151 3gw4_A Uncharacterized protein 98.7 1.6E-07 5.5E-12 75.6 10.4 151 205-355 4-176 (203)
152 1a17_A Serine/threonine protei 98.6 1.1E-06 3.7E-11 68.0 14.6 124 61-186 16-145 (166)
153 2qfc_A PLCR protein; TPR, HTH, 98.6 8.2E-07 2.8E-11 76.2 15.1 159 197-355 79-266 (293)
154 3q49_B STIP1 homology and U bo 98.6 3.9E-07 1.3E-11 68.1 11.6 98 293-390 8-107 (137)
155 1p5q_A FKBP52, FK506-binding p 98.6 7.9E-08 2.7E-12 84.2 8.3 159 6-186 127-293 (336)
156 2c2l_A CHIP, carboxy terminus 98.6 1.7E-07 5.9E-12 79.8 10.2 90 96-186 7-100 (281)
157 2dba_A Smooth muscle cell asso 98.6 5.9E-07 2E-11 68.0 12.1 108 258-367 27-140 (148)
158 4f3v_A ESX-1 secretion system 98.6 1.5E-06 5E-11 72.6 15.1 133 162-298 106-245 (282)
159 3dss_A Geranylgeranyl transfer 98.6 3.5E-05 1.2E-09 66.2 23.9 167 134-305 40-238 (331)
160 1elw_A TPR1-domain of HOP; HOP 98.6 5.6E-07 1.9E-11 65.0 11.1 97 294-390 4-102 (118)
161 1na0_A Designed protein CTPR3; 98.6 6E-07 2E-11 65.5 11.3 97 294-390 9-107 (125)
162 3q49_B STIP1 homology and U bo 98.6 5.2E-07 1.8E-11 67.4 10.3 100 258-358 8-109 (137)
163 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 6E-07 2E-11 82.2 12.2 129 260-389 269-415 (457)
164 2dba_A Smooth muscle cell asso 98.5 2E-06 6.8E-11 65.0 13.2 97 293-389 27-128 (148)
165 1wao_1 Serine/threonine protei 98.5 2.8E-07 9.5E-12 84.8 9.7 119 266-385 13-135 (477)
166 2kck_A TPR repeat; tetratricop 98.5 1E-06 3.5E-11 62.9 10.4 100 260-360 7-111 (112)
167 2hr2_A Hypothetical protein; a 98.5 5.5E-07 1.9E-11 67.9 8.9 107 261-389 13-131 (159)
168 2vyi_A SGTA protein; chaperone 98.5 1.2E-06 4E-11 64.6 10.9 98 293-390 11-110 (131)
169 2xev_A YBGF; tetratricopeptide 98.5 7.5E-07 2.6E-11 65.7 9.6 97 265-362 8-112 (129)
170 2fbn_A 70 kDa peptidylprolyl i 98.5 3.6E-07 1.2E-11 73.3 8.1 164 4-188 16-187 (198)
171 3q7a_A Farnesyltransferase alp 98.5 9.8E-05 3.4E-09 63.8 23.4 178 25-207 56-256 (349)
172 1elr_A TPR2A-domain of HOP; HO 98.5 8E-07 2.7E-11 65.5 9.1 106 262-369 7-121 (131)
173 1hxi_A PEX5, peroxisome target 98.5 8.1E-07 2.8E-11 64.8 8.9 98 262-360 20-119 (121)
174 3dss_A Geranylgeranyl transfer 98.4 3.2E-05 1.1E-09 66.4 19.4 213 175-390 47-305 (331)
175 4gcn_A Protein STI-1; structur 98.4 1.4E-06 4.7E-11 64.2 9.6 106 226-358 10-115 (127)
176 1ihg_A Cyclophilin 40; ppiase 98.4 1.4E-06 4.9E-11 77.1 11.4 90 293-382 272-363 (370)
177 3k9i_A BH0479 protein; putativ 98.4 2.7E-07 9.4E-12 66.9 5.6 82 308-389 4-90 (117)
178 2if4_A ATFKBP42; FKBP-like, al 98.4 5.1E-07 1.7E-11 79.1 8.1 148 224-390 179-329 (338)
179 2xev_A YBGF; tetratricopeptide 98.4 4.8E-06 1.6E-10 61.2 12.3 92 299-390 7-106 (129)
180 1elr_A TPR2A-domain of HOP; HO 98.4 1.2E-06 4.2E-11 64.5 8.8 97 294-390 4-109 (131)
181 4b4t_Q 26S proteasome regulato 98.4 3E-06 1E-10 77.0 13.1 162 227-388 58-244 (434)
182 3rkv_A Putative peptidylprolyl 98.4 1E-06 3.6E-11 68.0 8.6 102 259-360 11-131 (162)
183 3rkv_A Putative peptidylprolyl 98.4 1E-06 3.5E-11 68.1 8.4 99 225-324 12-128 (162)
184 3ro3_A PINS homolog, G-protein 98.4 9.7E-07 3.3E-11 67.8 8.1 94 296-389 51-158 (164)
185 3k9i_A BH0479 protein; putativ 98.4 3.8E-07 1.3E-11 66.1 5.0 92 272-363 3-98 (117)
186 3n71_A Histone lysine methyltr 98.3 7.2E-06 2.5E-10 75.0 13.8 123 268-390 318-465 (490)
187 1dce_A Protein (RAB geranylger 98.3 3.6E-05 1.2E-09 72.1 18.2 167 210-378 46-244 (567)
188 4b4t_Q 26S proteasome regulato 98.3 2.8E-05 9.5E-10 70.6 16.9 57 130-186 11-83 (434)
189 2if4_A ATFKBP42; FKBP-like, al 98.3 5E-06 1.7E-10 72.8 10.4 152 193-360 179-333 (338)
190 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.4E-06 8.1E-11 78.2 8.2 157 7-185 249-413 (457)
191 3ro3_A PINS homolog, G-protein 98.2 1E-05 3.5E-10 61.9 9.7 131 226-356 11-159 (164)
192 2kat_A Uncharacterized protein 98.2 7.2E-06 2.5E-10 59.0 8.2 64 325-388 18-81 (115)
193 2l6j_A TPR repeat-containing p 98.2 1E-06 3.5E-11 62.9 3.2 92 294-385 4-103 (111)
194 3ma5_A Tetratricopeptide repea 98.1 1.3E-05 4.4E-10 56.0 8.7 66 325-390 6-71 (100)
195 1wao_1 Serine/threonine protei 98.1 4.2E-06 1.4E-10 76.9 7.4 119 62-182 10-134 (477)
196 2hr2_A Hypothetical protein; a 98.1 8.9E-06 3E-10 61.3 7.4 114 225-366 12-142 (159)
197 1na3_A Designed protein CTPR2; 98.0 3.2E-05 1.1E-09 52.6 8.6 79 295-373 10-90 (91)
198 1dce_A Protein (RAB geranylger 98.0 0.00015 5E-09 68.0 14.9 163 237-403 42-233 (567)
199 1klx_A Cysteine rich protein B 98.0 8.7E-05 3E-09 55.3 10.7 110 274-390 10-127 (138)
200 3bee_A Putative YFRE protein; 98.0 6.6E-05 2.3E-09 51.3 9.1 69 324-392 4-75 (93)
201 1zu2_A Mitochondrial import re 97.9 6.4E-06 2.2E-10 61.9 4.1 96 271-389 14-120 (158)
202 1ihg_A Cyclophilin 40; ppiase 97.9 8.7E-05 3E-09 65.6 11.8 90 123-214 273-362 (370)
203 2l6j_A TPR repeat-containing p 97.9 5.3E-05 1.8E-09 53.7 8.2 67 324-390 2-68 (111)
204 3n71_A Histone lysine methyltr 97.9 7E-05 2.4E-09 68.5 10.5 131 33-187 319-464 (490)
205 1zu2_A Mitochondrial import re 97.9 1.8E-05 6.1E-10 59.5 5.4 106 235-363 13-128 (158)
206 1na3_A Designed protein CTPR2; 97.8 0.00013 4.3E-09 49.5 7.9 66 325-390 8-73 (91)
207 2kat_A Uncharacterized protein 97.7 9.8E-05 3.4E-09 52.9 7.4 80 278-358 4-85 (115)
208 1klx_A Cysteine rich protein B 97.7 0.00064 2.2E-08 50.5 11.9 112 238-357 9-128 (138)
209 2kc7_A BFR218_protein; tetratr 97.6 0.00013 4.5E-09 50.5 6.2 81 300-388 6-89 (99)
210 3qww_A SET and MYND domain-con 97.6 0.00021 7.1E-09 64.3 8.9 82 307-388 311-410 (433)
211 3lvg_A Clathrin heavy chain 1; 97.5 1.2E-05 4.2E-10 70.8 -0.0 209 21-245 81-325 (624)
212 1wy6_A Hypothetical protein ST 97.5 0.0043 1.5E-07 44.3 12.6 148 227-392 8-157 (172)
213 2kc7_A BFR218_protein; tetratr 97.5 0.00038 1.3E-08 48.0 7.2 59 332-390 6-65 (99)
214 3qww_A SET and MYND domain-con 97.4 0.00072 2.5E-08 60.8 9.9 94 271-364 310-425 (433)
215 3qwp_A SET and MYND domain-con 97.4 0.00071 2.4E-08 60.9 9.8 88 301-388 294-399 (429)
216 3ma5_A Tetratricopeptide repea 97.4 0.00086 2.9E-08 46.5 8.1 65 223-288 6-70 (100)
217 3qwp_A SET and MYND domain-con 97.4 0.0024 8.3E-08 57.4 12.6 100 266-365 294-415 (429)
218 3ly7_A Transcriptional activat 97.3 0.011 3.8E-07 51.1 15.8 136 222-359 192-343 (372)
219 1qsa_A Protein (soluble lytic 97.3 0.13 4.4E-06 48.3 25.2 314 26-354 10-347 (618)
220 3mkq_A Coatomer beta'-subunit; 97.2 0.032 1.1E-06 54.9 19.9 155 132-321 608-763 (814)
221 3ly7_A Transcriptional activat 97.2 0.0054 1.8E-07 53.0 12.3 135 255-392 190-342 (372)
222 3mkq_A Coatomer beta'-subunit; 97.0 0.033 1.1E-06 54.7 18.0 168 30-249 606-774 (814)
223 1pc2_A Mitochondria fission pr 97.0 0.0035 1.2E-07 46.6 8.1 91 274-365 13-110 (152)
224 3u64_A Protein TP_0956; tetrat 96.8 0.0045 1.5E-07 51.3 8.2 53 340-392 218-272 (301)
225 3bee_A Putative YFRE protein; 96.8 0.01 3.4E-07 40.3 8.5 69 291-359 3-76 (93)
226 2v5f_A Prolyl 4-hydroxylase su 96.8 0.01 3.6E-07 41.2 8.8 69 298-366 9-86 (104)
227 3mkq_B Coatomer subunit alpha; 96.7 0.066 2.3E-06 40.8 12.9 104 201-321 13-116 (177)
228 3lvg_A Clathrin heavy chain 1; 96.6 3.2E-06 1.1E-10 74.4 -12.1 262 22-346 53-324 (624)
229 1pc2_A Mitochondria fission pr 96.6 0.0075 2.6E-07 44.8 7.0 80 311-390 15-101 (152)
230 1nzn_A CGI-135 protein, fissio 96.1 0.064 2.2E-06 38.2 9.5 92 273-365 15-113 (126)
231 2v5f_A Prolyl 4-hydroxylase su 96.1 0.035 1.2E-06 38.5 8.2 65 325-389 4-75 (104)
232 3u64_A Protein TP_0956; tetrat 96.1 0.013 4.5E-07 48.6 6.6 82 275-358 179-272 (301)
233 3mkq_B Coatomer subunit alpha; 96.0 0.29 1E-05 37.3 13.4 129 232-386 13-141 (177)
234 1wy6_A Hypothetical protein ST 96.0 0.26 8.8E-06 35.4 13.8 140 134-291 18-157 (172)
235 4h7y_A Dual specificity protei 95.9 0.037 1.3E-06 40.6 7.5 108 258-367 12-135 (161)
236 4h7y_A Dual specificity protei 95.7 0.16 5.4E-06 37.3 10.0 51 340-390 74-124 (161)
237 4gns_B Protein CSD3, chitin bi 95.6 0.051 1.8E-06 52.0 9.6 55 333-387 344-398 (754)
238 4ady_A RPN2, 26S proteasome re 95.2 0.83 2.8E-05 44.9 16.1 118 199-320 496-620 (963)
239 2ff4_A Probable regulatory pro 94.4 0.12 4.2E-06 45.6 8.0 55 332-386 177-231 (388)
240 1nzn_A CGI-135 protein, fissio 94.4 0.15 5.2E-06 36.3 6.8 85 306-390 13-104 (126)
241 2wpv_A GET4, UPF0363 protein Y 94.2 2.2 7.6E-05 36.0 16.9 168 95-287 35-216 (312)
242 3ffl_A Anaphase-promoting comp 93.1 0.41 1.4E-05 35.9 7.4 118 261-390 22-152 (167)
243 4ady_A RPN2, 26S proteasome re 92.1 9.9 0.00034 37.5 19.4 83 234-320 500-586 (963)
244 4fhn_B Nucleoporin NUP120; pro 91.8 4.7 0.00016 41.3 15.8 80 94-175 900-988 (1139)
245 1y8m_A FIS1; mitochondria, unk 91.7 2.1 7.1E-05 31.2 9.4 74 291-364 36-115 (144)
246 4fhn_B Nucleoporin NUP120; pro 91.6 3.6 0.00012 42.1 14.8 162 98-276 817-988 (1139)
247 2ff4_A Probable regulatory pro 91.0 0.88 3E-05 40.1 8.5 65 263-328 175-247 (388)
248 3esl_A Checkpoint serine/threo 90.4 3.3 0.00011 32.2 10.0 47 310-356 95-145 (202)
249 4b4t_P 26S proteasome regulato 90.4 9.7 0.00033 34.2 15.1 184 136-320 29-244 (445)
250 3ffl_A Anaphase-promoting comp 90.2 2.7 9.1E-05 31.5 9.0 58 230-287 26-91 (167)
251 1v54_E Cytochrome C oxidase po 90.1 2.5 8.5E-05 28.5 7.8 49 319-367 38-86 (109)
252 1v54_E Cytochrome C oxidase po 90.1 3.1 0.00011 28.1 8.7 64 239-303 25-88 (109)
253 3o48_A Mitochondria fission 1 89.9 1.1 3.8E-05 32.1 6.5 74 291-364 37-116 (134)
254 1zbp_A Hypothetical protein VP 89.7 7.4 0.00025 31.9 12.8 118 233-360 6-134 (273)
255 4gns_B Protein CSD3, chitin bi 89.4 0.96 3.3E-05 43.4 7.8 120 28-149 253-397 (754)
256 1zbp_A Hypothetical protein VP 88.8 1.2 4.2E-05 36.4 6.8 56 304-359 7-64 (273)
257 3o48_A Mitochondria fission 1 88.2 4.7 0.00016 28.9 8.7 74 254-327 35-112 (134)
258 4a1g_A Mitotic checkpoint seri 87.9 6.1 0.00021 29.1 9.5 79 312-393 53-134 (152)
259 2wpv_A GET4, UPF0363 protein Y 87.7 12 0.0004 31.7 21.5 166 197-389 37-217 (312)
260 3txn_A 26S proteasome regulato 86.4 16 0.00056 32.0 15.9 25 160-184 21-45 (394)
261 3lpz_A GET4 (YOR164C homolog); 86.1 15 0.00052 31.3 20.3 168 95-287 37-215 (336)
262 2y69_E Cytochrome C oxidase su 85.8 7.9 0.00027 27.8 9.3 64 239-303 68-131 (152)
263 2wvi_A Mitotic checkpoint seri 84.7 10 0.00034 28.4 9.4 31 326-356 96-126 (164)
264 2y69_E Cytochrome C oxidase su 84.4 7 0.00024 28.0 7.8 51 317-367 79-129 (152)
265 2uwj_G Type III export protein 84.1 7.5 0.00026 26.1 8.5 85 73-162 21-106 (115)
266 4b4t_R RPN7, 26S proteasome re 84.0 7.4 0.00025 34.7 10.2 60 261-320 133-194 (429)
267 2p58_C Putative type III secre 83.6 8 0.00027 26.0 8.2 85 73-162 22-107 (116)
268 1y8m_A FIS1; mitochondria, unk 81.9 13 0.00043 27.1 11.0 65 324-388 37-105 (144)
269 2qx5_A Nucleoporin NIC96; mRNA 81.1 38 0.0013 32.1 16.4 43 27-70 156-198 (661)
270 2uwj_G Type III export protein 79.5 12 0.0004 25.2 9.0 78 173-254 21-98 (115)
271 2p58_C Putative type III secre 78.8 12 0.00042 25.1 8.6 78 173-254 22-99 (116)
272 3eiq_C Programmed cell death p 78.6 5.2 0.00018 34.5 6.7 63 196-258 220-287 (358)
273 3lpz_A GET4 (YOR164C homolog); 77.6 32 0.0011 29.3 23.7 165 197-389 39-216 (336)
274 4b4t_R RPN7, 26S proteasome re 77.5 29 0.00097 30.9 11.6 62 125-186 133-196 (429)
275 4b4t_P 26S proteasome regulato 77.4 40 0.0014 30.2 20.2 198 106-319 29-263 (445)
276 3esl_A Checkpoint serine/threo 76.3 25 0.00085 27.3 9.8 57 237-293 92-149 (202)
277 1qsa_A Protein (soluble lytic 76.2 52 0.0018 30.9 33.1 182 199-394 291-484 (618)
278 4aez_C MAD3, mitotic spindle c 74.7 23 0.0008 28.0 8.9 32 325-356 149-180 (223)
279 1wdy_A 2-5A-dependent ribonucl 73.4 15 0.00052 30.0 8.4 11 385-395 271-281 (285)
280 3qil_A Clathrin heavy chain 1; 69.1 2.9 0.0001 29.2 2.3 69 2-78 16-84 (125)
281 3kea_A K1L; tropism, ANK repea 66.8 29 0.001 28.6 8.7 20 335-354 167-186 (285)
282 3eu9_A Huntingtin-interacting 66.0 13 0.00044 29.4 6.3 82 307-389 152-236 (240)
283 1wdy_A 2-5A-dependent ribonucl 63.9 51 0.0017 26.7 9.7 18 99-116 8-25 (285)
284 3ltm_A Alpha-REP4; protein eng 62.1 52 0.0018 25.4 18.4 91 257-353 93-183 (211)
285 2d2s_A Exocyst complex compone 61.0 62 0.0021 25.9 10.0 84 130-216 25-114 (235)
286 2d2s_A Exocyst complex compone 57.8 50 0.0017 26.5 8.0 89 229-320 23-117 (235)
287 4gq2_M Nucleoporin NUP120; bet 57.6 1.2E+02 0.004 30.4 12.3 51 265-320 816-866 (950)
288 2ion_A PDCD4, programmed cell 57.3 53 0.0018 24.2 7.5 60 197-256 13-77 (152)
289 4a1g_A Mitotic checkpoint seri 53.2 65 0.0022 23.7 10.1 53 242-294 83-136 (152)
290 2wvi_A Mitotic checkpoint seri 53.1 69 0.0023 23.9 9.7 54 242-295 78-132 (164)
291 3kea_A K1L; tropism, ANK repea 51.6 98 0.0034 25.3 9.7 18 339-356 231-248 (285)
292 2nsz_A Programmed cell death p 51.4 32 0.0011 24.4 5.4 26 197-222 11-36 (129)
293 3hra_A Ankyrin repeat family p 50.6 31 0.0011 26.3 5.8 17 203-219 12-28 (201)
294 1k1a_A B-cell lymphoma 3-encod 50.1 81 0.0028 24.6 8.5 58 30-91 13-72 (241)
295 3ygs_P Procaspase 9; apoptosis 49.5 17 0.00057 24.4 3.4 37 37-77 51-87 (97)
296 1n11_A Ankyrin; clathrin, BAND 49.3 1.4E+02 0.0046 26.3 11.3 16 202-217 218-233 (437)
297 2nsz_A Programmed cell death p 48.8 69 0.0024 22.7 8.8 25 161-185 10-34 (129)
298 3ltj_A Alpharep-4; protein eng 48.3 87 0.003 23.8 19.5 144 200-353 35-178 (201)
299 2zu6_B Programmed cell death p 47.5 1.3E+02 0.0043 25.3 11.7 194 96-291 6-234 (307)
300 3ygs_P Procaspase 9; apoptosis 47.0 61 0.0021 21.6 6.2 38 207-244 51-88 (97)
301 4b4t_S RPN3, 26S proteasome re 46.7 74 0.0025 29.0 8.0 59 259-320 231-296 (523)
302 1n11_A Ankyrin; clathrin, BAND 45.8 1E+02 0.0035 27.1 9.2 331 29-395 17-372 (437)
303 2ion_A PDCD4, programmed cell 45.8 42 0.0014 24.7 5.4 65 226-291 11-77 (152)
304 1bpo_A Protein (clathrin); cla 45.8 1.7E+02 0.0057 26.3 13.3 139 207-352 343-482 (494)
305 2r9g_A AAA ATPase, central reg 45.1 1.1E+02 0.0036 23.8 9.5 56 235-291 25-85 (204)
306 3hra_A Ankyrin repeat family p 45.1 82 0.0028 23.8 7.5 80 32-116 11-92 (201)
307 2fu4_A Ferric uptake regulatio 45.1 56 0.0019 20.6 6.5 62 248-310 6-68 (83)
308 1ug3_A EIF4GI, eukaryotic prot 44.9 1.1E+02 0.0038 26.1 8.7 26 197-222 15-40 (339)
309 3eu9_A Huntingtin-interacting 44.6 94 0.0032 24.1 8.0 52 199-251 180-234 (240)
310 4gq2_M Nucleoporin NUP120; bet 44.6 1.6E+02 0.0056 29.4 10.9 127 99-238 816-950 (950)
311 2fe3_A Peroxide operon regulat 44.4 80 0.0027 22.8 6.8 61 147-208 11-71 (145)
312 2xig_A Ferric uptake regulatio 44.3 90 0.0031 22.7 7.2 60 249-309 17-76 (150)
313 3bqo_A Telomeric repeat-bindin 43.6 1.1E+02 0.0038 23.6 8.2 65 310-374 94-165 (211)
314 3aji_A 26S proteasome non-ATPa 43.6 1.1E+02 0.0037 23.7 8.2 20 30-49 10-29 (231)
315 3jxi_A Vanilloid receptor-rela 42.8 43 0.0015 26.9 5.7 56 30-85 9-73 (260)
316 3ljn_A Hypothetical protein; a 41.6 83 0.0028 26.8 7.7 174 203-385 60-266 (364)
317 2w57_A Ferric uptake regulatio 41.5 82 0.0028 23.0 6.4 62 147-209 6-68 (150)
318 1k1a_A B-cell lymphoma 3-encod 41.1 87 0.003 24.5 7.3 183 199-394 12-210 (241)
319 3bu8_A Telomeric repeat-bindin 41.0 67 0.0023 25.2 5.8 20 369-388 123-142 (235)
320 1wgl_A TOLL-interacting protei 40.9 30 0.001 20.6 3.2 24 34-57 34-57 (59)
321 2fe3_A Peroxide operon regulat 40.7 82 0.0028 22.8 6.3 60 249-309 12-71 (145)
322 3mv2_A Coatomer subunit alpha; 40.5 1.7E+02 0.0057 24.7 11.6 59 317-389 196-256 (325)
323 3eyy_A Putative iron uptake re 40.2 79 0.0027 22.9 6.1 60 147-208 8-67 (145)
324 3ctd_A Putative ATPase, AAA fa 40.1 1.3E+02 0.0045 23.5 8.9 57 235-291 46-107 (213)
325 1mzb_A Ferric uptake regulatio 39.4 78 0.0027 22.5 6.0 60 148-208 8-68 (136)
326 2fu4_A Ferric uptake regulatio 38.1 74 0.0025 20.0 6.8 61 48-109 7-68 (83)
327 1ya0_A SMG-7 transcript varian 37.4 1.3E+02 0.0043 27.4 8.2 47 339-385 165-211 (497)
328 2p1h_A APAF-1, apoptotic prote 36.4 89 0.003 20.4 5.8 35 206-240 49-83 (94)
329 4b4t_S RPN3, 26S proteasome re 36.0 1.1E+02 0.0038 27.9 7.4 68 294-361 231-305 (523)
330 4aez_C MAD3, mitotic spindle c 34.8 1.7E+02 0.0058 23.1 9.4 53 241-293 131-184 (223)
331 3eiq_C Programmed cell death p 34.6 2.2E+02 0.0076 24.5 13.0 64 227-291 220-285 (358)
332 1oyz_A Hypothetical protein YI 34.6 1.8E+02 0.0062 23.4 19.2 244 13-271 27-279 (280)
333 3txn_A 26S proteasome regulato 34.5 2.3E+02 0.008 24.7 29.0 217 163-391 104-345 (394)
334 4ets_A Ferric uptake regulatio 34.4 1.4E+02 0.0048 22.1 6.9 70 39-109 13-85 (162)
335 3ltm_A Alpha-REP4; protein eng 34.2 1.5E+02 0.0053 22.5 18.9 16 157-172 94-109 (211)
336 2f6m_A Suppressor protein STP2 34.0 81 0.0028 19.2 5.0 46 125-171 4-49 (65)
337 2crb_A Nuclear receptor bindin 33.4 64 0.0022 21.2 3.9 23 363-385 18-40 (97)
338 2r9g_A AAA ATPase, central reg 33.3 1.7E+02 0.0057 22.7 8.5 63 126-189 14-84 (204)
339 3bge_A Predicted ATPase; struc 33.1 1.7E+02 0.0057 22.6 8.4 55 235-289 18-77 (201)
340 2b7e_A PRE-mRNA processing pro 32.9 49 0.0017 19.7 3.1 29 140-168 3-31 (59)
341 3b7b_A Euchromatic histone-lys 32.5 66 0.0022 25.2 5.2 18 371-388 218-235 (237)
342 1mzb_A Ferric uptake regulatio 32.1 1.4E+02 0.0046 21.2 7.0 62 48-110 8-70 (136)
343 2w57_A Ferric uptake regulatio 32.0 1.5E+02 0.005 21.6 7.0 63 47-110 6-69 (150)
344 2xig_A Ferric uptake regulatio 32.0 1.5E+02 0.005 21.6 7.6 62 47-109 16-77 (150)
345 3mwm_A ZUR, putative metal upt 31.4 1.2E+02 0.0042 21.6 5.9 49 62-110 17-65 (139)
346 2p1h_A APAF-1, apoptotic prote 31.1 52 0.0018 21.6 3.6 35 35-73 48-82 (94)
347 3bge_A Predicted ATPase; struc 30.8 1.8E+02 0.0063 22.4 7.8 45 128-172 9-56 (201)
348 1ug3_A EIF4GI, eukaryotic prot 30.5 1.8E+02 0.0061 24.8 7.7 21 96-116 14-34 (339)
349 4ets_A Ferric uptake regulatio 30.4 1.3E+02 0.0046 22.2 6.1 59 250-309 24-84 (162)
350 3jxi_A Vanilloid receptor-rela 29.7 78 0.0027 25.2 5.2 161 232-394 10-212 (260)
351 2o03_A Probable zinc uptake re 29.5 1.3E+02 0.0045 21.2 5.7 47 63-109 15-61 (131)
352 3eyy_A Putative iron uptake re 29.1 1.3E+02 0.0045 21.7 5.8 60 48-109 9-68 (145)
353 3ctd_A Putative ATPase, AAA fa 28.9 2.1E+02 0.0071 22.4 7.9 48 125-172 34-84 (213)
354 2ijq_A Hypothetical protein; s 28.6 1.3E+02 0.0045 22.3 5.6 60 26-86 36-103 (161)
355 2qq8_A TBC1 domain family memb 28.0 1.4E+02 0.0048 25.3 6.6 44 246-289 215-258 (334)
356 2pnn_A Transient receptor pote 27.1 1.3E+02 0.0044 24.2 6.1 50 235-284 21-79 (273)
357 2keb_A DNA polymerase subunit 27.1 1.4E+02 0.0049 19.9 5.9 32 242-273 27-58 (101)
358 2o03_A Probable zinc uptake re 26.6 1E+02 0.0034 21.8 4.7 37 273-309 24-60 (131)
359 1bd8_A P19INK4D CDK4/6 inhibit 26.0 71 0.0024 22.9 4.0 148 62-219 3-156 (156)
360 2qfz_A TBC1 domain family memb 25.9 2.8E+02 0.0094 23.6 8.2 77 245-321 230-313 (345)
361 3mwm_A ZUR, putative metal upt 25.5 1.2E+02 0.0042 21.6 5.0 42 129-170 19-60 (139)
362 2ko4_A Mediator of RNA polymer 25.1 95 0.0033 19.7 3.5 30 54-83 32-61 (81)
363 3ltj_A Alpharep-4; protein eng 24.4 2.3E+02 0.0077 21.3 19.4 16 258-273 151-166 (201)
364 2ijq_A Hypothetical protein; s 23.5 2.3E+02 0.0078 21.0 7.9 53 236-288 44-104 (161)
365 3l6a_A Eukaryotic translation 23.4 3.6E+02 0.012 23.2 12.6 26 197-222 16-41 (364)
366 1q02_A Sequestosome 1; helical 23.3 1.1E+02 0.0039 17.5 3.8 10 307-316 37-46 (52)
367 3ljn_A Hypothetical protein; a 23.1 1.6E+02 0.0056 24.9 6.3 142 202-352 26-196 (364)
368 4fke_A Aminopeptidase N; zinc 22.9 5.7E+02 0.019 25.4 14.6 49 236-287 738-786 (909)
369 3mv2_A Coatomer subunit alpha; 22.6 3.5E+02 0.012 22.8 10.9 127 33-187 124-256 (325)
370 3qye_A TBC1 domain family memb 22.1 3.5E+02 0.012 22.7 10.6 76 245-320 209-288 (331)
371 3qye_A TBC1 domain family memb 21.8 3.6E+02 0.012 22.6 9.6 120 126-249 152-287 (331)
372 2bn5_A PSI; nuclear protein, s 21.2 94 0.0032 15.7 3.5 23 365-387 7-29 (33)
373 2cfu_A SDSA1; SDS-hydrolase, l 21.2 2.2E+02 0.0075 27.0 7.1 62 311-375 437-498 (658)
374 3bu8_A Telomeric repeat-bindin 21.1 1.2E+02 0.0041 23.8 4.2 21 300-320 120-140 (235)
375 4g8k_A 2-5A-dependent ribonucl 21.1 3.6E+02 0.012 22.4 9.6 105 76-192 217-328 (337)
376 2p22_A Suppressor protein STP2 20.8 1.2E+02 0.0043 22.8 4.2 46 225-271 112-157 (174)
377 3b7b_A Euchromatic histone-lys 20.7 2.9E+02 0.01 21.2 7.2 21 267-287 215-235 (237)
378 2yru_A Steroid receptor RNA ac 20.6 1.9E+02 0.0063 20.2 4.8 42 145-186 48-89 (118)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.9e-38 Score=299.31 Aligned_cols=392 Identities=11% Similarity=-0.001 Sum_probs=334.6
Q ss_pred ccccCCcchhHHhhcccC--CcChhhHHHHHHHHHhCCChHHHHHHHhhchhC---------------CCCCCchhHHHH
Q 038550 2 YAKSSRPAEASYLFHNIA--EKNIVSWNAMVANFAQNRLELKALQLVREMPIH---------------NEFPNSVTLTNV 64 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---------------~~~p~~~~~~~l 64 (423)
|.+.|++++|+.+|+.+. .++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.+
T Consensus 127 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (597)
T 2xpi_A 127 YCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLR 206 (597)
T ss_dssp HHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHH
Confidence 567788888888888874 478888899999999999999999998854322 223457788899
Q ss_pred HHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHH--------------------------------------HHHHHHhc
Q 038550 65 LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNA--------------------------------------LTDMYAKC 106 (423)
Q Consensus 65 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------------------l~~~~~~~ 106 (423)
+.++.+.|++++|.++|++|.+.+. .+...+.. ++..|.+.
T Consensus 207 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 207 GQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc
Confidence 9999999999999999999987752 23333322 24456677
Q ss_pred CChHHHHHHh-chh--cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHH
Q 038550 107 GCLNLAQNVF-NIS--FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGV 183 (423)
Q Consensus 107 g~~~~a~~~~-~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 183 (423)
|++++|.++| +.. +++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.
T Consensus 286 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 286 DELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888999988 222 4788999999999999999999999999999876 55788999999999999999999999999
Q ss_pred HHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 038550 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260 (423)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 260 (423)
+.+.. +.+..++..++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..
T Consensus 365 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 442 (597)
T 2xpi_A 365 LVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHL 442 (597)
T ss_dssp HHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSH
T ss_pred HHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchH
Confidence 98654 4567888999999999999999999999875 4578899999999999999999999999999874 34788
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-------CCCCC--HhHHHH
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-------PVEPD--ANIWGA 331 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~--~~~~~~ 331 (423)
+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 99999999999999999999999999874 557889999999999999999999999987 45787 789999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
++.+|.+.|++++|...++++.+.+|+++.+|..++.+|.+.|++++|.++++++.+.. |+....|.
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~ 588 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS--PNEIMASD 588 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999998753 44433333
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.1e-37 Score=292.67 Aligned_cols=378 Identities=8% Similarity=-0.093 Sum_probs=321.8
Q ss_pred cccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHH
Q 038550 3 AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 82 (423)
.+.|.+..+...+..++.+++..|+.++..|.+.|++++|..+|++|.. ..|+..++..++.+|.+.|++++|..+|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 3456677778888888888999999999999999999999999999985 45788999999999999999999999999
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhc-hhcCC-------------------cchHHHHHHHHhcCCChhhH
Q 038550 83 RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD-------------------EVSYNILIVGYSQTSDCSES 142 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~-------------------~~~~~~l~~~~~~~~~~~~a 142 (423)
.+... +++..+++.++.+|.+.|++++|.++|+ ..+.+ ..+|+.++.+|.+.|++++|
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 88644 7889999999999999999999999995 44433 67899999999999999999
Q ss_pred HHHHHHHHhcCCCCchhhHHHH--------------------------------------HHHHHhHhhHHhhhHHHHHH
Q 038550 143 LSLFSEMRLLGMKHDVVSFMGA--------------------------------------ISACANLAAIKQGKEIHGVT 184 (423)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~~~l--------------------------------------l~~~~~~~~~~~a~~~~~~~ 184 (423)
++.|++|.+.+ +.+...+..+ +..|.+.|++++|.++++.+
T Consensus 220 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 220 KECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 99999999864 2233333322 44566789999999999998
Q ss_pred HHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH
Q 038550 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261 (423)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 261 (423)
.+. +++..++..++.+|.+.|++++|..+|+++. +.+..+++.++.++.+.|++++|..+++++.+.. +.+..+
T Consensus 299 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 299 NGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp TTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred hcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence 876 5789999999999999999999999999885 4478899999999999999999999999998753 447889
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhc
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIY 339 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 339 (423)
+..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++ ...| +..+|..++.+|.+.
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 9999999999999999999999999864 456889999999999999999999999988 3344 788999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
|++++|..+|+++.+..|.++.+|..++.+|.+.|++++|+++++++.+.
T Consensus 455 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999876
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.8e-30 Score=234.89 Aligned_cols=365 Identities=12% Similarity=0.010 Sum_probs=207.9
Q ss_pred ccCCcchhHHhhcccCC--c-ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHH
Q 038550 4 KSSRPAEASYLFHNIAE--K-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 80 (423)
+.|++++|++.++.+.+ | +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|...
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 45666666666655543 2 33445555555666666666666666655432 33445666666666666666666666
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC
Q 038550 81 HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH 156 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 156 (423)
|+++++.. +.+..+|..+..++.+.|++++|.+.| ...+.+...+..+...+...|++++|.+.|+++.+.. +.
T Consensus 90 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 167 (388)
T 1w3b_A 90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN 167 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 66666553 333445666666666666666666666 2223344455556666666666666666666665542 33
Q ss_pred chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHH
Q 038550 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILG 233 (423)
Q Consensus 157 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~ 233 (423)
+..++..+...+...|++++|...++++.+.++ .+...+..+...+...|++++|...|++.. +.+..++..+...
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHH
Confidence 445566666666666666666666666665443 234445555556666666666666555433 2344555556666
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 313 (423)
+...|++++|...|+++.+... .+..++..+..++.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|
T Consensus 247 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666655421 134555556666666666666666666665542 34555555666666666666666
Q ss_pred HHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 314 VKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 314 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
...++++ ...| +..++..+...+.+.|++++|...++++.+..|.++..+..++..+...|
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 6666555 3333 34555556666666666666666666666666666655655555554443
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.2e-32 Score=250.65 Aligned_cols=211 Identities=12% Similarity=0.076 Sum_probs=160.5
Q ss_pred HHHHHHhhchhCCCCCCch-hHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchh
Q 038550 41 KALQLVREMPIHNEFPNSV-TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119 (423)
Q Consensus 41 ~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 119 (423)
.+..+.+.+.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4555667777777665543 58888999999999999999999999999999999999999998887764432
Q ss_pred cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHH
Q 038550 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199 (423)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 199 (423)
.+.+.++.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+++
T Consensus 81 --------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 81 --------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp --------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred --------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence 234567889999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHhcCCHHHHHHHhccCC----CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 038550 200 LDFYTRSGRIDLANKIFDCLP----VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 272 (423)
|.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..++..
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888777777777777777664 4677777777777777777777777777777777777777777777666553
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.1e-29 Score=229.62 Aligned_cols=365 Identities=12% Similarity=0.016 Sum_probs=314.2
Q ss_pred HHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 038550 29 MVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108 (423)
Q Consensus 29 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 108 (423)
+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++..++.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3556788999999999999988753 2344566677778889999999999999998875 6678899999999999999
Q ss_pred hHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHH
Q 038550 109 LNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184 (423)
Q Consensus 109 ~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 184 (423)
+++|...| ...+.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999 3345566789999999999999999999999999864 334556777888888999999999999999
Q ss_pred HHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH
Q 038550 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261 (423)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 261 (423)
.+..+ .+..++..+...+.+.|++++|...|+++. +.+...|..+...+...|++++|...+++...... .+..+
T Consensus 162 l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 239 (388)
T 1w3b_A 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVV 239 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHH
Confidence 98753 346788889999999999999999999875 44677899999999999999999999999988632 26788
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CC-CCCHhHHHHHHHHHHhc
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PV-EPDANIWGALLGACRIY 339 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~ 339 (423)
+..+..++...|++++|...++++.+.. +.+..+|..+..++.+.|++++|.+.|+++ .. ..+..++..+...+...
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999999864 445778999999999999999999999988 33 44788999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCcccc
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQ 401 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 401 (423)
|++++|...++++.+..|+++.++..++.+|.+.|++++|+..++++.+. .|+....|..
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~ 378 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSN 378 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999874 4554444433
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.3e-30 Score=238.26 Aligned_cols=184 Identities=10% Similarity=0.028 Sum_probs=174.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCC---------CccHHHHHHHHHHcCCCCch
Q 038550 23 IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF---------LRPGKEIHARIIRKGLNFDL 93 (423)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 93 (423)
...++.+|++|++.|++++|+++|++|.+.|++||..+|+++|.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346889999999999999999999999999999999999999999988765 46789999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHh-c----hhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 038550 94 FLTNALTDMYAKCGCLNLAQNVF-N----ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC 168 (423)
Q Consensus 94 ~~~~~l~~~~~~~g~~~~a~~~~-~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 168 (423)
.+|++||.+|++.|++++|.++| + ...||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999 2 346899999999999999999999999999999999999999999999999
Q ss_pred HhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc
Q 038550 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206 (423)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (423)
++.|++++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998864
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.9e-26 Score=211.39 Aligned_cols=383 Identities=11% Similarity=-0.024 Sum_probs=298.9
Q ss_pred ccccCCcchhHHhhcccCC--cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHH
Q 038550 2 YAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 79 (423)
|.+.|++++|+..|+++.+ |+..+|..+..++.+.|++++|.+.++++.+.+ +.+..++..+..++.+.|++++|..
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4567888888888888765 777788888888888888888888888887754 2345677778888888888888888
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh--------------------------------------chh--
Q 038550 80 IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF--------------------------------------NIS-- 119 (423)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~--------------------------------------~~~-- 119 (423)
.|+.+...+ +++......++..+........+.+.+ ...
T Consensus 95 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
T 2gw1_A 95 DLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173 (514)
T ss_dssp HHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCC
T ss_pred HHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCH
Confidence 888887776 334333333333333221111111111 000
Q ss_pred ---------cCCcchHHHHHHHHhc---CCChhhHHHHHHHHHh-----cCC--------CCchhhHHHHHHHHHhHhhH
Q 038550 120 ---------FRDEVSYNILIVGYSQ---TSDCSESLSLFSEMRL-----LGM--------KHDVVSFMGAISACANLAAI 174 (423)
Q Consensus 120 ---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~ll~~~~~~~~~ 174 (423)
+.+...+..+...+.. .|++++|+..|+++.+ ... +.+..++..+...+...|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
T 2gw1_A 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253 (514)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence 1113334444444444 8999999999999987 311 22345777888889999999
Q ss_pred HhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038550 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMR 251 (423)
Q Consensus 175 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (423)
++|...++.+.+..+. ...+..+..++...|++++|...++.+. +.+..++..+...+...|++++|...++++.
T Consensus 254 ~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 254 LGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp HHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999988765 7888889999999999999999998765 3467889999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CC---CCC--
Q 038550 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PV---EPD-- 325 (423)
Q Consensus 252 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~---~~~-- 325 (423)
+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ .. .++
T Consensus 332 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 409 (514)
T 2gw1_A 332 ELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409 (514)
T ss_dssp HTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred HhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence 86433 56788899999999999999999999999863 446778889999999999999999999887 22 222
Q ss_pred --HhHHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 326 --ANIWGALLGACRI---YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 326 --~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
...+..+...+.. .|++++|...++++.+..|.++.++..++.+|.+.|++++|...+++..+..
T Consensus 410 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 3488889999999 9999999999999999999999999999999999999999999999998754
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=3.6e-24 Score=197.39 Aligned_cols=297 Identities=8% Similarity=-0.046 Sum_probs=193.8
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHH
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (423)
.+...|..+...+.+.|++++|+++|+++.+.. +.+..++..+..++...|++++|...++++++.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 356678888888888899999999988887653 3467788888888888888888888888888775 44577788888
Q ss_pred HHHHhcCChHHHHHHh-ch---hcCCc---chHHHH------------HHHHhcCCChhhHHHHHHHHHhcCCCCchhhH
Q 038550 101 DMYAKCGCLNLAQNVF-NI---SFRDE---VSYNIL------------IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161 (423)
Q Consensus 101 ~~~~~~g~~~~a~~~~-~~---~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 161 (423)
.+|.+.|++++|...| .. .+.+. ..+..+ ...+...|++++|+..|+++.+.. +.+..++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 8888888888888888 22 22233 444444 333677777777777777777653 4456667
Q ss_pred HHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHH--------
Q 038550 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTL-------- 230 (423)
Q Consensus 162 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l-------- 230 (423)
..+..++...|++++|...++.+.+..+ .+..++..+..+|...|++++|...|+++. +.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 7777777777777777777777766532 335556666666666677666666666553 2233333333
Q ss_pred ----HHHHhccCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038550 231 ----ILGYGMLGEVDTAINLFEAMREDGVGYD-----PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301 (423)
Q Consensus 231 ----i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 301 (423)
...+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++++.... +.+...|..+.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 55556666666666666666553 222 2345555556666666666666666655542 33455566666
Q ss_pred HHHHhcCChHHHHHHHhhC-CCCC
Q 038550 302 DLLGRAGLMEDAVKLIKNL-PVEP 324 (423)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~-~~~~ 324 (423)
.+|...|++++|...|+++ .+.|
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCc
Confidence 6666666666666666655 4444
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=3.4e-24 Score=197.51 Aligned_cols=339 Identities=7% Similarity=-0.020 Sum_probs=274.0
Q ss_pred HHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----
Q 038550 41 KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---- 116 (423)
Q Consensus 41 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~---- 116 (423)
.+...+....... +.+...+..+...+.+.|++++|..+|+.+++.. +.+..++..+..++...|++++|...|
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444445554432 3466788899999999999999999999999875 567889999999999999999999999
Q ss_pred chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCch---hhHHHH------------HHHHHhHhhHHhhhHHH
Q 038550 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV---VSFMGA------------ISACANLAAIKQGKEIH 181 (423)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~ 181 (423)
+..+.+..++..+..+|.+.|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|...+
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445677889999999999999999999999999854 3333 455544 44488899999999999
Q ss_pred HHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 038550 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258 (423)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 258 (423)
+.+.+..+ .+...+..+..+|.+.|++++|...|+++. +.+..+|..+...|...|++++|...|+++.+... .+
T Consensus 167 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 244 (450)
T 2y4t_A 167 DKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DH 244 (450)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-Ch
Confidence 99988654 457778889999999999999999999875 45788999999999999999999999999987632 24
Q ss_pred HHHHHHH------------HHHHhccCcHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHhhC-
Q 038550 259 PVSYIAI------------LTACSHGGLVEKGKKYFDEMQADSVKPT-----EMHYACMVDLLGRAGLMEDAVKLIKNL- 320 (423)
Q Consensus 259 ~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~- 320 (423)
...+..+ ...|...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|+..++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445444 78899999999999999999986 344 447888899999999999999999987
Q ss_pred CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHH------------HHhcC-----ChhHHHHH
Q 038550 321 PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNM------------YAEAG-----KWDEASKV 382 (423)
Q Consensus 321 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~ 382 (423)
...| +...|..+..+|...|++++|...++++.+..|.++.++..+..+ |...| +.+++.+.
T Consensus 323 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~ 402 (450)
T 2y4t_A 323 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHH
Confidence 4455 688999999999999999999999999999999999998888743 44444 55667777
Q ss_pred HHHH
Q 038550 383 RELM 386 (423)
Q Consensus 383 ~~~m 386 (423)
++++
T Consensus 403 y~~~ 406 (450)
T 2y4t_A 403 YRKL 406 (450)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.6e-25 Score=204.66 Aligned_cols=360 Identities=10% Similarity=-0.081 Sum_probs=279.8
Q ss_pred ccccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHH
Q 038550 2 YAKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 78 (423)
|.+.|++++|+..|+++.+ .+..+|..+..++...|++++|...|+++...+. ++......++..+........+.
T Consensus 49 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 127 (514)
T 2gw1_A 49 YVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLK 127 (514)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHH
Confidence 4578999999999998765 4567899999999999999999999999988753 34444433333332211111111
Q ss_pred -----------------------------------HHHHHHHHcCC---------CCchHHHHHHHHHHHh---cCChHH
Q 038550 79 -----------------------------------EIHARIIRKGL---------NFDLFLTNALTDMYAK---CGCLNL 111 (423)
Q Consensus 79 -----------------------------------~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~ 111 (423)
.+...+..... +.+...+..+...+.. .|++++
T Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (514)
T 2gw1_A 128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDK 207 (514)
T ss_dssp TC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHH
T ss_pred HHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHH
Confidence 11111111100 1124444445555554 899999
Q ss_pred HHHHh-ch-------h----------cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhh
Q 038550 112 AQNVF-NI-------S----------FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173 (423)
Q Consensus 112 a~~~~-~~-------~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 173 (423)
|...| +. . +.+..++..+...+...|++++|...++++.+.. |+...+..+...+...|+
T Consensus 208 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~ 285 (514)
T 2gw1_A 208 ADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRND 285 (514)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCC
Confidence 99999 21 1 2345678889999999999999999999999865 347788899999999999
Q ss_pred HHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038550 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAM 250 (423)
Q Consensus 174 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 250 (423)
+++|...++.+.+..+ .+...+..+..++...|++++|...|+++. +.+...+..+...+...|++++|...++++
T Consensus 286 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 286 STEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp CTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999988654 346678889999999999999999998764 446788999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHh---cCChHHHHHHHhhC-C
Q 038550 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV-KPT----EMHYACMVDLLGR---AGLMEDAVKLIKNL-P 321 (423)
Q Consensus 251 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~-~ 321 (423)
.+.. +.+...+..+...+...|++++|...++++..... .++ ...+..+...+.. .|++++|...++++ .
T Consensus 365 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 365 KRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 8863 23567888999999999999999999999987621 122 3378889999999 99999999999987 3
Q ss_pred CCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 322 VEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 322 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
..| +..++..+...+...|++++|...++++.+..|.++..+..+
T Consensus 444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344 677889999999999999999999999999999988877665
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=3.2e-24 Score=202.30 Aligned_cols=362 Identities=11% Similarity=-0.019 Sum_probs=271.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHH
Q 038550 23 IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDM 102 (423)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (423)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++.+.|++++|.+.++++++.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4456666666777777777777777766643 2355566666666777777777777777776664 4455666666777
Q ss_pred HHhcCChHHHHHHhchhcCC------------------------------------------------------------
Q 038550 103 YAKCGCLNLAQNVFNISFRD------------------------------------------------------------ 122 (423)
Q Consensus 103 ~~~~g~~~~a~~~~~~~~~~------------------------------------------------------------ 122 (423)
+...|++++|...|+....+
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 77777777776665211000
Q ss_pred --------cc---hHHHHHHHHhcC--------CChhhHHHHHHHHHhcCCCCch-------hhHHHHHHHHHhHhhHHh
Q 038550 123 --------EV---SYNILIVGYSQT--------SDCSESLSLFSEMRLLGMKHDV-------VSFMGAISACANLAAIKQ 176 (423)
Q Consensus 123 --------~~---~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~ 176 (423)
.. ....+...+... +++++|..+++++.+.. +.+. .++..+...+...|++++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 00 122222222222 47889999999998754 2232 246666677788899999
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 253 (423)
|...++.+.+..+. ...+..+...+...|++++|...|+++. +.+..+|..+...+...|++++|...++++.+.
T Consensus 262 A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 262 AQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 99999999987644 7778889999999999999999998765 456788999999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-C-------CCCC
Q 038550 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-P-------VEPD 325 (423)
Q Consensus 254 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-------~~~~ 325 (423)
.. .+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++ . ....
T Consensus 340 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 340 NP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp CT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 43 256788899999999999999999999999874 456778899999999999999999999886 1 1112
Q ss_pred HhHHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 326 ANIWGALLGACRIY----------GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 326 ~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
...+..+...+... |++++|...++++.+..|.++.++..++.+|.+.|++++|.+.+++..+...
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 23344555667777 9999999999999999999999999999999999999999999999987653
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=6.5e-21 Score=169.86 Aligned_cols=305 Identities=12% Similarity=-0.022 Sum_probs=183.2
Q ss_pred CchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHH
Q 038550 57 NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVG 132 (423)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~ 132 (423)
+...+..+...+...|++++|...|+.+++.. +.+..++..+..++...|++++|...| +..+.+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34566777778888888888888888888765 446777888888888888888888888 3334466778888888
Q ss_pred HhcCCChhhHHHHHHHHHhcCCCC----chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCC
Q 038550 133 YSQTSDCSESLSLFSEMRLLGMKH----DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208 (423)
Q Consensus 133 ~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 208 (423)
+...|++++|...+++..+. .| +...+..+..... ...+..+...+...|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 88888888888888888764 34 2333333311000 0001123344555555
Q ss_pred HHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 038550 209 IDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285 (423)
Q Consensus 209 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 285 (423)
+++|...++++. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555443 2344555555566666666666666666655542 224555556666666666666666666666
Q ss_pred HHcCCCCChhhHH------------HHHHHHHhcCChHHHHHHHhhC-CCCCC-H----hHHHHHHHHHHhcCChhHHHH
Q 038550 286 QADSVKPTEMHYA------------CMVDLLGRAGLMEDAVKLIKNL-PVEPD-A----NIWGALLGACRIYGNVELGAW 347 (423)
Q Consensus 286 ~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~----~~~~~l~~~~~~~~~~~~a~~ 347 (423)
.+.. +.+...+. .+...+.+.|++++|...++++ ...|+ . ..+..+...+...|++++|..
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 5542 22222222 1244456666666666666655 22232 2 123344556666666666666
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 348 AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 348 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.++++.+..|.++.++..++.+|...|++++|...+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666553
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=7e-21 Score=169.66 Aligned_cols=323 Identities=8% Similarity=-0.020 Sum_probs=226.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHH
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (423)
|+..+..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 46678889999999999999999999998864 3467788999999999999999999999999875 446788999999
Q ss_pred HHHhcCChHHHHHHh-chh---c---CCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhH
Q 038550 102 MYAKCGCLNLAQNVF-NIS---F---RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~-~~~---~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 174 (423)
++...|++++|...| ... + .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999 222 2 23334444321100 01122233334444444
Q ss_pred HhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038550 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMR 251 (423)
Q Consensus 175 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (423)
++|...++.+.+..+ .+...+..+..++...|++++|...++++. +.+..++..+...+...|++++|...+++..
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444322 223344445555555555555555555432 2345566666667777777777777777766
Q ss_pred HcCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHH
Q 038550 252 EDGVGYDPVSYI------------AILTACSHGGLVEKGKKYFDEMQADSVKPTE----MHYACMVDLLGRAGLMEDAVK 315 (423)
Q Consensus 252 ~~~~~p~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 315 (423)
+... .+...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+..++...|++++|..
T Consensus 216 ~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 6432 1223222 33566888999999999999988863 2222 234457788899999999999
Q ss_pred HHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 316 LIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 316 ~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
.+++. ...| +..++..+...+...|++++|...++++.+..|.++.++..+..+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99887 3345 778899999999999999999999999999999998888888766543
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.2e-21 Score=184.78 Aligned_cols=358 Identities=11% Similarity=-0.008 Sum_probs=280.4
Q ss_pred ccccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHH
Q 038550 2 YAKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 78 (423)
|.+.|++++|+..|+++.+ .+..+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|.
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 4578999999999999865 478899999999999999999999999998864 346678889999999999999999
Q ss_pred HHHHHHHHcCCC-------------------------------------CchH---------------------------
Q 038550 79 EIHARIIRKGLN-------------------------------------FDLF--------------------------- 94 (423)
Q Consensus 79 ~~~~~~~~~~~~-------------------------------------~~~~--------------------------- 94 (423)
..|+.+ ..... |+..
T Consensus 114 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (537)
T 3fp2_A 114 FDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192 (537)
T ss_dssp HHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSS
T ss_pred HHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccH
Confidence 998633 21111 1000
Q ss_pred ---HHHHHHHHHH--------hcCChHHHHHHh-c---hhcCCc-------chHHHHHHHHhcCCChhhHHHHHHHHHhc
Q 038550 95 ---LTNALTDMYA--------KCGCLNLAQNVF-N---ISFRDE-------VSYNILIVGYSQTSDCSESLSLFSEMRLL 152 (423)
Q Consensus 95 ---~~~~l~~~~~--------~~g~~~~a~~~~-~---~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 152 (423)
....+...+. ..|++++|..+| . ..+.+. .++..+...+...|++++|...+++..+.
T Consensus 193 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 1111111111 124788888888 2 223332 24677778899999999999999999985
Q ss_pred CCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHH
Q 038550 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNT 229 (423)
Q Consensus 153 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ 229 (423)
.|+..++..+...+...|++++|...++.+.+..+ .+..++..+...+...|++++|...|+++. +.+...+..
T Consensus 273 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 349 (537)
T 3fp2_A 273 --HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ 349 (537)
T ss_dssp --CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHH
T ss_pred --CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 46678888899999999999999999999998764 356778889999999999999999998775 446788999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CC----ChhhHHHHHHHH
Q 038550 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV-KP----TEMHYACMVDLL 304 (423)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~ 304 (423)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+ ....+..+...+
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~ 428 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999998874 33567889999999999999999999999887621 11 112234445677
Q ss_pred Hhc----------CChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHH
Q 038550 305 GRA----------GLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 305 ~~~----------~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 365 (423)
... |++++|...|+++ ...| +...+..+...+...|++++|...++++.+..|.++.....
T Consensus 429 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 777 9999999999988 3344 67889999999999999999999999999999988766443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=9e-20 Score=160.55 Aligned_cols=286 Identities=12% Similarity=0.026 Sum_probs=163.6
Q ss_pred CCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHH
Q 038550 56 PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIV 131 (423)
Q Consensus 56 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~ 131 (423)
.+...+..+...+...|++++|..+++++.+.. +.+...+..++.++...|++++|...+ +..+.+...|..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 344445555555555555555555555555443 223334444445555555555555555 222334555666666
Q ss_pred HHhcCC-ChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHH
Q 038550 132 GYSQTS-DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210 (423)
Q Consensus 132 ~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 210 (423)
.+...| ++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+....
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------------- 157 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-------------------- 157 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT--------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc--------------------
Confidence 666666 6666666666666543 334455666666666666666666666665554322
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC-
Q 038550 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS- 289 (423)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~- 289 (423)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 158 ------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 158 ------------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp ------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 22333334445555555555555555555542 2244556666666666666666666666655431
Q ss_pred -------CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 290 -------VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 290 -------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
.+....++..+..+|...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence 1223456666666677777777777766665 2223 455666777777777777777777777777777777
Q ss_pred chHHHHHHHH-HhcCCh
Q 038550 361 GYYILLSNMY-AEAGKW 376 (423)
Q Consensus 361 ~~~~~l~~~~-~~~g~~ 376 (423)
..+..++.++ ...|+.
T Consensus 305 ~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 305 FSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHhCch
Confidence 7777777766 344443
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.88 E-value=1.5e-20 Score=165.43 Aligned_cols=352 Identities=10% Similarity=0.011 Sum_probs=167.0
Q ss_pred cccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHH
Q 038550 3 AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 82 (423)
-+.|++++|..+++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4678999999999999655 59999999999999999999999652 578899999999999999999999888
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHH
Q 038550 83 RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM 162 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 162 (423)
...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.++..|...|.+++|...|..+ ..|.
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~--pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp -------------------------CHHHHTTTTTC--C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 77664 55678899999999999999999999954 56679999999999999999999999977 4899
Q ss_pred HHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHH
Q 038550 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242 (423)
Q Consensus 163 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 242 (423)
.++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999999988 367899999999999999999988887765 455556678999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCC------ChhhHHHHHHHHHhcCChHHHHH
Q 038550 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKP------TEMHYACMVDLLGRAGLMEDAVK 315 (423)
Q Consensus 243 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~~ 315 (423)
|..+++...... +-....|+-+.-+|++- ++++..+.++....+ +++| +...|..+.-.|...++++.|..
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 999999988654 44566777776666654 344444444433333 4444 46789999999999999999987
Q ss_pred HHhhC-CCC-------------CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 038550 316 LIKNL-PVE-------------PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 316 ~~~~~-~~~-------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 381 (423)
.+-+- ... .+..+|-..+..|. +....++.-+..+....-+ ....+..+.+.|...-+..
T Consensus 304 tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld----~~r~v~~~~~~~~l~l~~~ 377 (449)
T 1b89_A 304 TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLD----HTRAVNYFSKVKQLPLVKP 377 (449)
T ss_dssp HHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCC----HHHHHHHHHHTTCTTTTHH
T ss_pred HHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccC----cHHHHHHHHHcCCcHHHHH
Confidence 65443 221 23334444444443 1112222222222211111 2344455566666666666
Q ss_pred HHHHHHhcc
Q 038550 382 VRELMKSRE 390 (423)
Q Consensus 382 ~~~~m~~~~ 390 (423)
++..+.+.+
T Consensus 378 yl~~v~~~n 386 (449)
T 1b89_A 378 YLRSVQNHN 386 (449)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhh
Confidence 666665544
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.2e-19 Score=159.78 Aligned_cols=280 Identities=10% Similarity=0.020 Sum_probs=233.3
Q ss_pred chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHH
Q 038550 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196 (423)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 196 (423)
...+.+...+..++..+...|++++|+++++++.+.. +.+...+..++.++...|++++|...++.+.+..+ .+...+
T Consensus 16 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 93 (330)
T 3hym_B 16 DGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSW 93 (330)
T ss_dssp ----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHH
T ss_pred hhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHH
Confidence 3345577778888888889999999999999998764 45566777788888999999999999999988654 346677
Q ss_pred HHHHHHHHhcC-CHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 038550 197 NSILDFYTRSG-RIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272 (423)
Q Consensus 197 ~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 272 (423)
..+...+...| ++++|...|++.. +.+...|..+...+...|++++|...++++.+.... +...+..+...+...
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 78888999999 9999999998765 346778999999999999999999999999886432 456777789999999
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CC----------CCCHhHHHHHHHHHHhcCC
Q 038550 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PV----------EPDANIWGALLGACRIYGN 341 (423)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~----------~~~~~~~~~l~~~~~~~~~ 341 (423)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++ .. ..+..++..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999999864 556788999999999999999999999876 11 2345788999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCccccc
Q 038550 342 VELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQT 402 (423)
Q Consensus 342 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 402 (423)
+++|...++++.+..|.++.++..++.+|...|++++|...+++..+. .|+....|..+
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 310 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTML 310 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHH
Confidence 999999999999999999999999999999999999999999998764 35544444433
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=1.8e-19 Score=161.29 Aligned_cols=283 Identities=12% Similarity=-0.018 Sum_probs=183.5
Q ss_pred HHhCCChHHHHH-HHhhchhCCC---CCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 038550 33 FAQNRLELKALQ-LVREMPIHNE---FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108 (423)
Q Consensus 33 ~~~~~~~~~a~~-~~~~m~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 108 (423)
+.-.|++++|++ .+++...... ..+...+..+...+.+.|++++|...++++++.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445588899998 8887665421 1145678888899999999999999999999875 5577888999999999999
Q ss_pred hHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHH---------------HHHHHH
Q 038550 109 LNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMG---------------AISACA 169 (423)
Q Consensus 109 ~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------------ll~~~~ 169 (423)
+++|...| +..+.+..++..+...+...|++++|+..++++.... +.+...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 99999999 3445677889999999999999999999999998864 222222221 233334
Q ss_pred hHhhHHhhhHHHHHHHHhccCc-chHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHH
Q 038550 170 NLAAIKQGKEIHGVTIRKHLHT-HLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAIN 245 (423)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~ 245 (423)
..|++++|...++.+.+..+.. +..++..+..+|.+.|++++|...|+++. +.+..+|..+...+...|++++|..
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7788888888888877765432 35566666666666777776666666543 2345566666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC----------ChhhHHHHHHHHHhcCChHHHHH
Q 038550 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP----------TEMHYACMVDLLGRAGLMEDAVK 315 (423)
Q Consensus 246 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~ 315 (423)
.++++.+.. +.+...+..+..+|.+.|++++|...++++.+..... ...+|..+..+|...|++++|..
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 666665542 2245566666666666666666666666665542100 13455555555555555555555
Q ss_pred HHh
Q 038550 316 LIK 318 (423)
Q Consensus 316 ~~~ 318 (423)
+++
T Consensus 352 ~~~ 354 (368)
T 1fch_A 352 ADA 354 (368)
T ss_dssp HHT
T ss_pred hHH
Confidence 544
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=7.2e-20 Score=163.89 Aligned_cols=262 Identities=10% Similarity=-0.051 Sum_probs=200.8
Q ss_pred cchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHH
Q 038550 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202 (423)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (423)
...+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++.+.+..+ .+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4456667777777777777777777777653 44555666677777777777777777777766543 345566667777
Q ss_pred HHhcCCHHHHHHHhccCCC---CChhhHHH---------------HHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHH
Q 038550 203 YTRSGRIDLANKIFDCLPV---KDSASWNT---------------LILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYI 263 (423)
Q Consensus 203 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~ 263 (423)
|...|++++|...++++.. .+...+.. .+..+...|++++|...++++.+..... +..++.
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 7777777777777765431 12222211 1333348899999999999998864321 578899
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCC
Q 038550 264 AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGN 341 (423)
Q Consensus 264 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 341 (423)
.+...+...|++++|...++++.... +.+..++..+...+...|++++|...|+++ ...| +...+..+...+...|+
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999874 456788999999999999999999999987 4444 67889999999999999
Q ss_pred hhHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 342 VELGAWAAEHLFMLKPQH-----------CGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 342 ~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+++|...++++.+..|.+ ..+|..++.+|...|++++|..++++-.
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 999999999999988877 7889999999999999999999887443
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.1e-17 Score=155.72 Aligned_cols=360 Identities=11% Similarity=-0.019 Sum_probs=297.7
Q ss_pred HHhhcccC-CcChhhHHHHHHHHHh----CCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhc----CCCCccHHHHHH
Q 038550 12 SYLFHNIA-EKNIVSWNAMVANFAQ----NRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR----GHFLRPGKEIHA 82 (423)
Q Consensus 12 ~~~~~~~~-~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~ 82 (423)
...++... ..+..++..+...|.. .+++++|++.|++..+.| +...+..+...+.. .+++++|...|+
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 44444432 3578888888888888 899999999999998875 66788888888888 899999999999
Q ss_pred HHHHcCCCCchHHHHHHHHHHHh----cCChHHHHHHh--chhcCCcchHHHHHHHHhc----CCChhhHHHHHHHHHhc
Q 038550 83 RIIRKGLNFDLFLTNALTDMYAK----CGCLNLAQNVF--NISFRDEVSYNILIVGYSQ----TSDCSESLSLFSEMRLL 152 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~--~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~ 152 (423)
+..+.| ++..+..|...|.. .+++++|...| .....+..++..|...|.. .+++++|++.|++..+.
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 998876 56677778888888 78999999999 2234567788888888887 78999999999999886
Q ss_pred CCCCchhhHHHHHHHHHh----HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHh----cCCHHHHHHHhccCC-CCC
Q 038550 153 GMKHDVVSFMGAISACAN----LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR----SGRIDLANKIFDCLP-VKD 223 (423)
Q Consensus 153 ~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~ 223 (423)
| +...+..+...+.. .++.++|...+++..+.+ +...+..+...|.. .+++++|..+|++.. ..+
T Consensus 181 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 254 (490)
T 2xm6_A 181 G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN 254 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC
T ss_pred C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5 56777788888877 789999999999998875 34566677888876 889999999998765 346
Q ss_pred hhhHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHcCCCCCh
Q 038550 224 SASWNTLILGYGM----LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG-----GLVEKGKKYFDEMQADSVKPTE 294 (423)
Q Consensus 224 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~ 294 (423)
...+..+...|.. .+++++|..+|++..+.| +...+..+...|... +++++|...|++..+.| +.
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~ 328 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DA 328 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CH
Confidence 6777778888877 899999999999998764 556777787888776 89999999999999875 34
Q ss_pred hhHHHHHHHHHhcC---ChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 295 MHYACMVDLLGRAG---LMEDAVKLIKNLPVEPDANIWGALLGACRI----YGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 295 ~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
..+..+...|...| ++++|++.|++.-...++..+..|...|.. .+++++|...++++.+.+ ++.++..++
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg 406 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Confidence 56777888887766 789999999988323578888889888888 899999999999998865 577889999
Q ss_pred HHHHh----cCChhHHHHHHHHHHhccc
Q 038550 368 NMYAE----AGKWDEASKVRELMKSREA 391 (423)
Q Consensus 368 ~~~~~----~g~~~~A~~~~~~m~~~~~ 391 (423)
..|.. .+++++|...|++..+.+.
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99998 8999999999999998874
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=7e-20 Score=163.86 Aligned_cols=261 Identities=9% Similarity=-0.051 Sum_probs=201.5
Q ss_pred CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHH
Q 038550 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201 (423)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 201 (423)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+..+ .+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 44557777777777888888888888777754 44666777777777778888888888877777643 34566677777
Q ss_pred HHHhcCCHHHHHHHhccCCCC-------------ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 038550 202 FYTRSGRIDLANKIFDCLPVK-------------DSASWNTLILGYGMLGEVDTAINLFEAMREDGVG-YDPVSYIAILT 267 (423)
Q Consensus 202 ~~~~~~~~~~A~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~ 267 (423)
+|...|++++|...|+++... ....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 788888888888877766421 1223445578889999999999999999886432 26789999999
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHH
Q 038550 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELG 345 (423)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a 345 (423)
.+...|++++|...++++.+.. +.+..+|..+..+|...|++++|+..|+++ ...| +..++..+...|...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999874 556889999999999999999999999987 4455 578899999999999999999
Q ss_pred HHHHHHHHhcCCC------------CcchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 346 AWAAEHLFMLKPQ------------HCGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 346 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
...++++.+..|. +..+|..++.++...|+.+.+..+.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998766 367789999999999999988887665
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.1e-18 Score=161.63 Aligned_cols=367 Identities=11% Similarity=-0.033 Sum_probs=245.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhC-----C--CCC-CchhHHHHHHHhhcCCCCccHHHHHHHHHHcC-----
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIH-----N--EFP-NSVTLTNVLPACARGHFLRPGKEIHARIIRKG----- 88 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 88 (423)
....||.|...+...|++++|++.|++..+. + ..| ...+|+.+..++...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567999999999999999999999887542 1 122 34688999999999999999999999887531
Q ss_pred -C-CCchHHHHHHHHHHHhc--CChHHHHHHh----chhcCCcchHHHHHHH---HhcCCChhhHHHHHHHHHhcCCCCc
Q 038550 89 -L-NFDLFLTNALTDMYAKC--GCLNLAQNVF----NISFRDEVSYNILIVG---YSQTSDCSESLSLFSEMRLLGMKHD 157 (423)
Q Consensus 89 -~-~~~~~~~~~l~~~~~~~--g~~~~a~~~~----~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~~~ 157 (423)
. .....++..+..++... +++++|+..| +..+.+...+..+..+ +...++.++|++.+++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1 12345666666565554 5789999999 3445566666666555 445678899999999988754 445
Q ss_pred hhhHHHHHHHHH----hHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHH
Q 038550 158 VVSFMGAISACA----NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTL 230 (423)
Q Consensus 158 ~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 230 (423)
...+..+...+. ..++.++|.+.+++.....+ .....+..+...|...|++++|...+++.. +.+..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 556655555444 34678899999999887654 345667789999999999999999998765 3456667666
Q ss_pred HHHHhcc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC
Q 038550 231 ILGYGML-------------------GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291 (423)
Q Consensus 231 i~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 291 (423)
..+|... +.++.|...+++..+... .+..++..+...+...|++++|...|++..+....
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 6555321 235677778887776532 24567888888999999999999999999886433
Q ss_pred CChh--hHHHHHH-HHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 292 PTEM--HYACMVD-LLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 292 ~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
+... .+..+.. .+...|+.++|+..|++. .+.|+...... ....+..++++..+.+|.++.++..++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG 437 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2211 2222222 234678999999998876 56665443322 234556678888889999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
.+|...|++++|++.|++..+.+.....+.+|+
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHCC-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999887666666665
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=4.6e-18 Score=158.20 Aligned_cols=362 Identities=10% Similarity=-0.020 Sum_probs=293.7
Q ss_pred cCCcchhHHhhcccCC-cChhhHHHHHHHHHh----CCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhc----CCCCc
Q 038550 5 SSRPAEASYLFHNIAE-KNIVSWNAMVANFAQ----NRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR----GHFLR 75 (423)
Q Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~ 75 (423)
.+++++|+..|+...+ .+..++..|...|.. .+++++|.+.|++..+.| +...+..+...+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 6899999999988755 578889999999998 999999999999998876 66777788888877 78999
Q ss_pred cHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCChHHHHHHh--chhcCCcchHHHHHHHHhc----CCChhhHHHH
Q 038550 76 PGKEIHARIIRKGLNFDLFLTNALTDMYAK----CGCLNLAQNVF--NISFRDEVSYNILIVGYSQ----TSDCSESLSL 145 (423)
Q Consensus 76 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~--~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 145 (423)
+|...|++..+.| ++..+..|..+|.. .+++++|.+.| .....+..++..+...|.. .++.++|+..
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 9999999998876 56777788888887 78999999999 2234577888889999988 8999999999
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHh----HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHh----cCCHHHHHHHhc
Q 038550 146 FSEMRLLGMKHDVVSFMGAISACAN----LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR----SGRIDLANKIFD 217 (423)
Q Consensus 146 ~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 217 (423)
|++..+.| +...+..+...+.. .+++++|...++...+.+. ...+..+...|.. .+++++|...|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN---SIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 99998865 45667777777775 7899999999999887653 4455667777877 899999999998
Q ss_pred cCCC-CChhhHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHc
Q 038550 218 CLPV-KDSASWNTLILGYGML-----GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG---LVEKGKKYFDEMQAD 288 (423)
Q Consensus 218 ~~~~-~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 288 (423)
+..+ .+...+..+...|... +++++|..++++..+.| +...+..+...|...| +.++|...|++..+.
T Consensus 284 ~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 8764 4677888888888877 89999999999999875 5567777777777756 899999999999986
Q ss_pred CCCCChhhHHHHHHHHHh----cCChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCC--
Q 038550 289 SVKPTEMHYACMVDLLGR----AGLMEDAVKLIKNLPVEPDANIWGALLGACRI----YGNVELGAWAAEHLFMLKPQ-- 358 (423)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~-- 358 (423)
| +...+..|...|.. .+++++|.+.|++.-...++..+..|...|.. .++.++|...|+++.+.+|.
T Consensus 361 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 361 G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 4 56778888888988 89999999999988323467788888888888 89999999999999999854
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 359 -HCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 359 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
++.....++..+.. +.+.+.+..+++
T Consensus 438 ~~~~a~~~l~~~~~~--~~~~a~~~a~~~ 464 (490)
T 2xm6_A 438 GTENRNITEKKLTAK--QLQQAELLSQQY 464 (490)
T ss_dssp HHHHHHHHHTTSCHH--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCHh--HHHHHHHHHHHH
Confidence 66666666555443 233444333333
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=4.2e-19 Score=158.80 Aligned_cols=260 Identities=12% Similarity=-0.049 Sum_probs=171.5
Q ss_pred CCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHH
Q 038550 56 PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIV 131 (423)
Q Consensus 56 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~ 131 (423)
.+...+..+...+.+.|++++|...|+++++.. +.+..++..+..++...|++++|...| +..+.+..+|..+..
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 345668888888999999999999999998875 557788888999999999999999988 334566788888999
Q ss_pred HHhcCCChhhHHHHHHHHHhcCCCCc-hhh----------HHHHHHHHHhHhhHHhhhHHHHHHHHhccCc-chHHHHHH
Q 038550 132 GYSQTSDCSESLSLFSEMRLLGMKHD-VVS----------FMGAISACANLAAIKQGKEIHGVTIRKHLHT-HLFVANSI 199 (423)
Q Consensus 132 ~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~----------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 199 (423)
+|...|++++|+..++++.+.. |+ ... +..+...+...|++++|...++++.+..+.. +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999888743 32 222 2234667777888888888888887765432 45566666
Q ss_pred HHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 038550 200 LDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 276 (423)
...|...|++++|...|+++. +.+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|+++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 666766777777666666543 3345566666666666666666666666666542 123556666666666666666
Q ss_pred HHHHHHHHHHHcCCC-----------CChhhHHHHHHHHHhcCChHHHHHHHhh
Q 038550 277 KGKKYFDEMQADSVK-----------PTEMHYACMVDLLGRAGLMEDAVKLIKN 319 (423)
Q Consensus 277 ~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (423)
+|...|+++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 666666666554100 0134455555555555555555554443
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=3.2e-18 Score=147.30 Aligned_cols=267 Identities=11% Similarity=-0.010 Sum_probs=195.1
Q ss_pred HHhcCChHHHHHHhch-hcCC----cchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhh
Q 038550 103 YAKCGCLNLAQNVFNI-SFRD----EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177 (423)
Q Consensus 103 ~~~~g~~~~a~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 177 (423)
....|++..|+..++. ...+ ......+.++|...|+++.|+..++. . -+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3445666666665521 1111 12334456666777777776665543 1 255666677777777777777777
Q ss_pred hHHHHHHHHhccCc-chHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 038550 178 KEIHGVTIRKHLHT-HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256 (423)
Q Consensus 178 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 256 (423)
.+.++.+...+..| +...+..+..++...|++++|.+.+++ ..+...+..++..+.+.|++++|...++++.+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-- 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 77777777665433 344556677888999999999999998 5678889999999999999999999999999874
Q ss_pred CCHHHH---HHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHH
Q 038550 257 YDPVSY---IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGA 331 (423)
Q Consensus 257 p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~ 331 (423)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|+..|+++ ...| ++.++..
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 543211 22334455669999999999999987 4678889999999999999999999999987 4455 7788999
Q ss_pred HHHHHHhcCChhH-HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 038550 332 LLGACRIYGNVEL-GAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382 (423)
Q Consensus 332 l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 382 (423)
++..+...|+.++ +..+++++.+.+|+++.+.. ...+.+.++++..-
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 9999999999876 67899999999999876543 34455555555443
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=8.3e-17 Score=151.23 Aligned_cols=381 Identities=9% Similarity=-0.020 Sum_probs=271.9
Q ss_pred ccCCcchhHHhhcccCC--c-ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHh-hcCCCCccHHH
Q 038550 4 KSSRPAEASYLFHNIAE--K-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC-ARGHFLRPGKE 79 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~ 79 (423)
+.|++++|..+|+++.+ | +...|...+..+.+.|++++|.++|+++.... |+...|...+... ...|+.+.|.+
T Consensus 24 ~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp HSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred HhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHH
Confidence 46899999999999876 3 56689999999999999999999999998753 6777777776533 45678887766
Q ss_pred ----HHHHHHHc-CCC-CchHHHHHHHHHHHh---------cCChHHHHHHhch-h-cCCc---chHHHHHHH---H---
Q 038550 80 ----IHARIIRK-GLN-FDLFLTNALTDMYAK---------CGCLNLAQNVFNI-S-FRDE---VSYNILIVG---Y--- 133 (423)
Q Consensus 80 ----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~-~-~~~~---~~~~~l~~~---~--- 133 (423)
+|+..+.. |.. ++...|...+....+ .|+++.|..+|+. . .|.. ..|...... +
T Consensus 102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~ 181 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIH 181 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchh
Confidence 66666543 444 345677777776554 6889999999922 1 2221 223322221 1
Q ss_pred -------hcCCChhhHHHHHHHHH------hcC---CCCch--------hhHHHHHHHHHhH----hh----HHhhhHHH
Q 038550 134 -------SQTSDCSESLSLFSEMR------LLG---MKHDV--------VSFMGAISACANL----AA----IKQGKEIH 181 (423)
Q Consensus 134 -------~~~~~~~~a~~~~~~m~------~~~---~~~~~--------~~~~~ll~~~~~~----~~----~~~a~~~~ 181 (423)
.+.+++..|..+++++. +.. ++|+. ..|...+...... ++ .+.+..+|
T Consensus 182 ~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y 261 (530)
T 2ooe_A 182 LAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAY 261 (530)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHH
Confidence 12345677777776532 221 24431 2333333221111 11 23667788
Q ss_pred HHHHHhccCcchHHHHHHHHHHHh-------cCCHH-------HHHHHhccCCC---C-ChhhHHHHHHHHhccCCHHHH
Q 038550 182 GVTIRKHLHTHLFVANSILDFYTR-------SGRID-------LANKIFDCLPV---K-DSASWNTLILGYGMLGEVDTA 243 (423)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~a 243 (423)
++++...+ .+...|..++..+.+ .|+++ +|..+|++... | +...|..++..+.+.|++++|
T Consensus 262 ~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 262 EQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence 88887643 456677777777765 68876 89999987653 3 578899999999999999999
Q ss_pred HHHHHHHHHcCCCCC-H-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCChHHHHHHHhhC
Q 038550 244 INLFEAMREDGVGYD-P-VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL-LGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 244 ~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~ 320 (423)
..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+.. +.+...|...... +...|++++|..+|++.
T Consensus 341 ~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 341 HSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 9999999985 443 3 578888888889999999999999998752 2233333332222 34689999999999977
Q ss_pred -CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc----hHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 321 -PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG----YYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 321 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
...| ++..|..++..+...|+.++|..+|+++....|.++. +|...+......|+.+.+..+.+++.+.-
T Consensus 418 l~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 418 LKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3345 6789999999999999999999999999998876665 78788888888999999999999987654
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=1.7e-18 Score=152.13 Aligned_cols=260 Identities=7% Similarity=-0.088 Sum_probs=180.8
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHH
Q 038550 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204 (423)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (423)
.+..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|...++.+.+..+ .+...+..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHH
Confidence 34444444455555555555555554432 22334444444455555555555555555544322 22334444555555
Q ss_pred hcCCHHHHHHHhccCC---CCChhhHHHH--------------HH-HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038550 205 RSGRIDLANKIFDCLP---VKDSASWNTL--------------IL-GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266 (423)
Q Consensus 205 ~~~~~~~A~~~~~~~~---~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 266 (423)
..|++++|...++++. +.+...+..+ .. .+...|++++|...++++.+... .+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 5555555555554432 1111222221 22 36778999999999999988643 3778899999
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhH
Q 038550 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVEL 344 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~ 344 (423)
..+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++ ...| +...+..+...+...|++++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999998874 456788999999999999999999999987 3344 67889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 345 GAWAAEHLFMLKPQ------------HCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 345 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
|...++++.+..|. ++.++..++.++.+.|++++|..++++..+
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999988 688899999999999999999999876544
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1.3e-16 Score=149.83 Aligned_cols=364 Identities=9% Similarity=0.005 Sum_probs=264.1
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHH
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (423)
.|..+|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+++.|..+|++++... |+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 36778999998 47899999999999999976 34466789999999999999999999999999774 5777777776
Q ss_pred HH-HHhcCChHHHHH----Hhch-------hcCCcchHHHHHHHHhc---------CCChhhHHHHHHHHHhcCCCCchh
Q 038550 101 DM-YAKCGCLNLAQN----VFNI-------SFRDEVSYNILIVGYSQ---------TSDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 101 ~~-~~~~g~~~~a~~----~~~~-------~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
.. ....|+.+.|.+ +|+. .+.+...|...+....+ .|+++.|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 53 345677777665 5521 12355677777776654 688999999999998831111122
Q ss_pred hHHHHHHHH-------------HhHhhHHhhhHHHHHHHH------hc---cCcc--------hHHHHHHHHHHHhc---
Q 038550 160 SFMGAISAC-------------ANLAAIKQGKEIHGVTIR------KH---LHTH--------LFVANSILDFYTRS--- 206 (423)
Q Consensus 160 ~~~~ll~~~-------------~~~~~~~~a~~~~~~~~~------~~---~~~~--------~~~~~~l~~~~~~~--- 206 (423)
.|....... .+.+++..|..++..... .. ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 333222211 134567777777665321 11 2332 23444444332221
Q ss_pred -CCH----HHHHHHhccCC---CCChhhHHHHHHHHhc-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHH
Q 038550 207 -GRI----DLANKIFDCLP---VKDSASWNTLILGYGM-------LGEVD-------TAINLFEAMREDGVGYDPVSYIA 264 (423)
Q Consensus 207 -~~~----~~A~~~~~~~~---~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~~~~~ 264 (423)
++. +.+..+|++.. +.++..|..++..+.+ .|+++ +|..++++..+.-.+-+...+..
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 222 35666777655 3477888888888775 79987 89999999886322336788999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-HhHHHHHHHH-HHhc
Q 038550 265 ILTACSHGGLVEKGKKYFDEMQADSVKPT--EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-ANIWGALLGA-CRIY 339 (423)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~-~~~~ 339 (423)
++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++. ...|+ ...+...... +...
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc
Confidence 999999999999999999999985 454 257888888889999999999999988 43443 2333322222 3468
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
|+.++|..+|+++.+..|+++.+|..++..+.+.|+.++|+.+|++....+
T Consensus 405 ~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999998764
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=2.1e-17 Score=145.08 Aligned_cols=264 Identities=9% Similarity=-0.083 Sum_probs=153.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHH
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (423)
+...|..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~--- 94 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA--- 94 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH---
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHH---
Confidence 34455566666666666666666666665542 2244455555555666666666666666665543 223444444
Q ss_pred HHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHH--------------HH-
Q 038550 102 MYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGA--------------IS- 166 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------l~- 166 (423)
+...+...|++++|.+.++++.+.. +.+...+..+ ..
T Consensus 95 ---------------------------la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 95 ---------------------------LAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp ---------------------------HHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------C
T ss_pred ---------------------------HHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 4444445555555555555554432 1111122111 22
Q ss_pred HHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHH
Q 038550 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTA 243 (423)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a 243 (423)
.+...|++++|...++.+.+..+. +...+..+...+...|++++|...++++. +.+..++..+...+...|++++|
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 266777888888888877765432 45556666666777777777776666543 33456666677777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCChHH
Q 038550 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP-----------TEMHYACMVDLLGRAGLMED 312 (423)
Q Consensus 244 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~ 312 (423)
...++++.+.. +.+..++..+..++...|++++|...++++.+..... +...+..+..++.+.|++++
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 77777766643 2245666667777777777777777777766642111 34556666666666666666
Q ss_pred HHHHHhhC
Q 038550 313 AVKLIKNL 320 (423)
Q Consensus 313 a~~~~~~~ 320 (423)
|..++++.
T Consensus 305 A~~~~~~~ 312 (327)
T 3cv0_A 305 VELTYAQN 312 (327)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHHH
Confidence 66666544
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2.5e-19 Score=157.77 Aligned_cols=240 Identities=13% Similarity=0.086 Sum_probs=96.9
Q ss_pred hcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHH
Q 038550 105 KCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184 (423)
Q Consensus 105 ~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 184 (423)
+.|++++|.++++.. ++..+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++..
T Consensus 15 ~~~~ld~A~~fae~~-~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 456677777777333 2224777777777777777777777754 245667777777777778888887777666
Q ss_pred HHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038550 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264 (423)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 264 (423)
++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.++..|...|++++|...|..+ ..|..
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~ 153 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGR 153 (449)
T ss_dssp -----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHH
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHH
Confidence 653 23355667777788888888887777753 56668888888888888888888888865 36778
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhH
Q 038550 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344 (423)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 344 (423)
++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|++++
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCHHH
Confidence 888888888888888888777 25677888888888888888886666655444433 4457777888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038550 345 GAWAAEHLFMLKPQHCGYYILLSNMYAEA 373 (423)
Q Consensus 345 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 373 (423)
|..+++....+++.+...|+.++.+|++-
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 88888888888887777888777766654
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=1.2e-17 Score=143.77 Aligned_cols=247 Identities=11% Similarity=0.007 Sum_probs=202.2
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCch--hhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcC
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDV--VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 207 (423)
++-....|++..|+..+++... ..|+. .....+..++...|+++.|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445678999999999887654 34443 3556678899999999999976654 24567788888999999999
Q ss_pred CHHHHHHHhccCC----CC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 038550 208 RIDLANKIFDCLP----VK-DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282 (423)
Q Consensus 208 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 282 (423)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998753 23 566777888999999999999999987 457889999999999999999999999
Q ss_pred HHHHHcCCCCChhhH---HHHHHHHHhcCChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 283 DEMQADSVKPTEMHY---ACMVDLLGRAGLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 283 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
+++.+.. |+.... ..++..+...|++++|..+|+++ ....+...++.+..++...|++++|+..++++.+.+|
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999874 553211 22334444568999999999998 3344788999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChhH-HHHHHHHHHhcc
Q 038550 358 QHCGYYILLSNMYAEAGKWDE-ASKVRELMKSRE 390 (423)
Q Consensus 358 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 390 (423)
.++.++..++..+...|+.++ +.++++++.+..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999976 578989887654
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=6.5e-16 Score=151.65 Aligned_cols=284 Identities=12% Similarity=0.049 Sum_probs=218.6
Q ss_pred HHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHH
Q 038550 64 VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESL 143 (423)
Q Consensus 64 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 143 (423)
+...+...|.+++|..+|++.. -.....+.+ +-..+++++|.++.+.. .+..+|..+..++...|++++|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv-n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4555667777777877777642 111112222 22667788888777433 34678889999999999999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCC
Q 038550 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223 (423)
Q Consensus 144 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 223 (423)
+.|.+. -|...|..++.++.+.|++++|.+++....+....+... +.++.+|.+.+++++...+. ..++
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Id--t~LafaYAKl~rleele~fI---~~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALAKTNRLAELEEFI---NGPN 1194 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccccc--HHHHHHHHhhcCHHHHHHHH---hCCC
Confidence 999653 466788889999999999999999999887765333333 35888899999998655553 4556
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038550 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (423)
...|..+...|...|++++|..+|... ..|..+..+|++.|+++.|.+.+++. .+..+|..+..+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 677778899999999999999999984 47899999999999999999999876 345788888889
Q ss_pred HHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc--CChhHHHH
Q 038550 304 LGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEA--GKWDEASK 381 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~ 381 (423)
|...|++..|...... +..++..+..++..|.+.|.+++|+.+++....++|.+...|..++.+|.+- ++.-++.+
T Consensus 1260 cve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999887764 4556677779999999999999999999999999999999998888777654 33444444
Q ss_pred HHH
Q 038550 382 VRE 384 (423)
Q Consensus 382 ~~~ 384 (423)
+|.
T Consensus 1338 ~f~ 1340 (1630)
T 1xi4_A 1338 LFW 1340 (1630)
T ss_pred HHH
Confidence 443
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=4e-15 Score=146.19 Aligned_cols=332 Identities=10% Similarity=0.039 Sum_probs=201.4
Q ss_pred cccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHH
Q 038550 3 AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 82 (423)
...|.+++|..+|++.. ....+.+.++. ..+++++|.++.++.. +..+|..+..++...|++++|...|.
T Consensus 1060 i~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34566777777777653 11222233322 5566777777666441 35566677777777777777777765
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhch---hcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh
Q 038550 83 RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
+. .|...|..++.++.+.|++++|.+.+.+ ..+++...+.++.+|++.+++++.... .+ .++..
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f----I~---~~n~a 1196 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF----IN---GPNNA 1196 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHH
Confidence 42 3556666677777777777777777722 223333444567777777666643322 21 34455
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCC
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (423)
.+..+...|...|++++|..+|..+ ..|..+...|.+.|+++.|.+.+++.. +..+|..+-.+|...|+
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC--CHHHHHHHHHHHhhhhH
Confidence 5666777777777777777777664 356667777777777777777777663 55677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--CChHHHHHHH
Q 038550 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA--GLMEDAVKLI 317 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~ 317 (423)
+..|...... +..++..+..++..|.+.|.+++|+.+++...... +-....|..|...|++. ++..++.+.|
T Consensus 1266 f~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1266 FRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7766665443 22355566677777888888888888887766543 33344555566666543 3444444444
Q ss_pred h-hCCCCC------CHhHHHHHHHHHHhcCChhHHHHHHHHHHhc------------CCCCcchHHHHHHHHHhcC
Q 038550 318 K-NLPVEP------DANIWGALLGACRIYGNVELGAWAAEHLFML------------KPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 318 ~-~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~p~~~~~~~~l~~~~~~~g 374 (423)
. ++.+.| +...|.-+.-.|.+.|+++.|....-+-... .+.++..|...+..|...+
T Consensus 1340 ~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1340 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 3 333322 4566777778888888888777333222111 3556666666666666555
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.4e-16 Score=145.97 Aligned_cols=352 Identities=9% Similarity=-0.068 Sum_probs=227.9
Q ss_pred ccccCCcchhHHhhcccCC------------cChhhHHHHHHHHHhCCChHHHHHHHhhchhC-----C-CCC-CchhHH
Q 038550 2 YAKSSRPAEASYLFHNIAE------------KNIVSWNAMVANFAQNRLELKALQLVREMPIH-----N-EFP-NSVTLT 62 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~p-~~~~~~ 62 (423)
|.+.|++++|++.|++..+ ....+|+.+...|...|++++|...+++..+. + ..+ ...++.
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 3467999999999987532 23567999999999999999999999887542 1 111 234555
Q ss_pred HHHHHhhc--CCCCccHHHHHHHHHHcCCCCchHHHHHHHHH---HHhcCChHHHHHHh----chhcCCcchHHHHHHHH
Q 038550 63 NVLPACAR--GHFLRPGKEIHARIIRKGLNFDLFLTNALTDM---YAKCGCLNLAQNVF----NISFRDEVSYNILIVGY 133 (423)
Q Consensus 63 ~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~ 133 (423)
.+..++.. .+++++|...|++.++.. +.++..+..+..+ +...++.++|++.+ +..+.+..++..+...+
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 55555443 457899999999999875 3355555555544 34567778888777 44455666777666555
Q ss_pred hc----CCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc---
Q 038550 134 SQ----TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS--- 206 (423)
Q Consensus 134 ~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 206 (423)
.. .+++++|.+.+++..... +.+...+..+...+...|++++|...++++.+..+. +..++..+..+|...
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~ 297 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQ 297 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH
Confidence 44 467889999999988764 556778889999999999999999999999887543 345555565555432
Q ss_pred ----------------CCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHH
Q 038550 207 ----------------GRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV--SYIAI 265 (423)
Q Consensus 207 ----------------~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~l 265 (423)
+..+.|...++... +.+..++..+...+...|++++|...|++..+....|... .+..+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~ 377 (472)
T 4g1t_A 298 VMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRY 377 (472)
T ss_dssp HHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 23456666666543 4466788999999999999999999999998865443221 22333
Q ss_pred HH-HHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCCh
Q 038550 266 LT-ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNV 342 (423)
Q Consensus 266 l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 342 (423)
.. .....|+.++|+..|++..+. .|+.......+ ..+.+++++. ...| +..+|..+...|...|++
T Consensus 378 ~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~ 446 (472)
T 4g1t_A 378 GNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKM 446 (472)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 22 245789999999999999884 45543322222 2233333333 2234 677999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 343 ELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 343 ~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
++|++.|+++++.+|.+|.+..-++
T Consensus 447 ~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 447 QQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp C------------------------
T ss_pred HHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 9999999999999998887766543
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=159.09 Aligned_cols=111 Identities=12% Similarity=0.106 Sum_probs=72.5
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMRE---DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 301 (423)
.+||++|.+||+.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||++||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4566666666666666666666665543 3566666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCCh-HHHHHHHhhC---CCCCCHhHHHHHHHH
Q 038550 302 DLLGRAGLM-EDAVKLIKNL---PVEPDANIWGALLGA 335 (423)
Q Consensus 302 ~~~~~~~~~-~~a~~~~~~~---~~~~~~~~~~~l~~~ 335 (423)
.++++.|+. ++|.++|++| |+.||..+|++++.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 666666653 5566666666 666666666666543
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=2.3e-18 Score=163.66 Aligned_cols=120 Identities=14% Similarity=0.245 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhccCC-------CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038550 192 HLFVANSILDFYTRSGRIDLANKIFDCLP-------VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264 (423)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 264 (423)
...+|+++|++||+.|++++|.++|++|. .||+.|||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35577777777777777777777775542 57888889999999999999999999999999999999999999
Q ss_pred HHHHHhccCc-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038550 265 ILTACSHGGL-VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311 (423)
Q Consensus 265 ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (423)
+|.++++.|+ .+.|.++|++|.+.|+.||..+|++++.+..+.+-++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~ 253 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHH
Confidence 9999999887 4788899999999999999999998887666554333
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.1e-16 Score=133.67 Aligned_cols=229 Identities=10% Similarity=0.039 Sum_probs=152.2
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHH
Q 038550 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204 (423)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (423)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...++.+.+.......
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------- 73 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA----------- 73 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc-----------
Confidence 45556666666677777777777666655 55566666666666666666666666665553321100
Q ss_pred hcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 038550 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284 (423)
Q Consensus 205 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 284 (423)
+.. ....++..+...+...|++++|...+++..+. .|+. ..+...|++++|...++.
T Consensus 74 ---~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 74 ---DYK-----------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEA 130 (258)
T ss_dssp ---CHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHH
T ss_pred ---chH-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHH
Confidence 000 00344555666666677777777777776664 2332 235556777777777777
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
+.... +.+...+..+...+...|++++|...|+++ ...| +..++..+...+...|++++|+..++++.+..|.++.+
T Consensus 131 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 209 (258)
T 3uq3_A 131 EAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 209 (258)
T ss_dssp HHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHH
Confidence 77652 334556677777777788888888777776 2233 56677777788888888888888888888888888888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 363 YILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+..++.++...|++++|...+++..+..
T Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 210 YIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 8888888888888888888888776654
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=3.5e-16 Score=128.65 Aligned_cols=195 Identities=15% Similarity=0.057 Sum_probs=151.2
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038550 191 THLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267 (423)
Q Consensus 191 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 267 (423)
++...+..+...+.+.|++++|...|++.. +.+...+..+...+.+.|++++|+..+++..+... .+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 445556667777777888888888777654 34667788888888899999999999999887642 26678888888
Q ss_pred HHhcc-----------CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHH
Q 038550 268 ACSHG-----------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGA 335 (423)
Q Consensus 268 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~ 335 (423)
++... |++++|...+++..+.. +-+...+..+..+|...|++++|+..|++. .+..++..+..+..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 88888 99999999999999864 446778888999999999999999999987 222788899999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 336 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+...|++++|+..++++.+..|.++.++..++.++...|++++|+..+++..
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988754
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=7.1e-16 Score=130.41 Aligned_cols=194 Identities=18% Similarity=0.098 Sum_probs=147.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCC----HHHHHHHHH
Q 038550 196 ANSILDFYTRSGRIDLANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV--GYD----PVSYIAILT 267 (423)
Q Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~ll~ 267 (423)
+..+...+...|++++|...|++.. ..+...|..+..++...|++++|...+++..+... .|+ ..++..+..
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 3344445555555555555554322 13455666677777777778888877777765421 122 578889999
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHH
Q 038550 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELG 345 (423)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a 345 (423)
++...|++++|...++++... .|+. ..+...|++++|...++++ ...| +...+..+...+...|++++|
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999985 3553 3566778899999999987 3455 566888889999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 346 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
...++++.+..|.++.++..++.+|...|++++|+..+++..+.. |+....|.
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~ 211 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYI 211 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHH
Confidence 999999999999999999999999999999999999999998754 44433343
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=1.9e-15 Score=129.00 Aligned_cols=241 Identities=11% Similarity=-0.017 Sum_probs=121.2
Q ss_pred HHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc--hHHHHHHHHHHHhc
Q 038550 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH--LFVANSILDFYTRS 206 (423)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 206 (423)
....+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+....+. ...+..+..++...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3334444444444444444444332 12222344444444444444444444444444211111 11233444444444
Q ss_pred CCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 038550 207 GRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283 (423)
Q Consensus 207 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 283 (423)
|++++|...|++.. +.+..+|..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|...++
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444332 2234455555555555555555555555554431 1234444444422233346666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCC---hHHHHHHHhhC----CCCCC------HhHHHHHHHHHHhcCChhHHHHHHH
Q 038550 284 EMQADSVKPTEMHYACMVDLLGRAGL---MEDAVKLIKNL----PVEPD------ANIWGALLGACRIYGNVELGAWAAE 350 (423)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~----~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~ 350 (423)
++.+.. +.+...+..+..++...|+ +++|...+++. ...|+ ..++..+...|...|++++|...++
T Consensus 167 ~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 167 KVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666542 2334455555555555555 55555555544 11232 2466677788888899999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHh
Q 038550 351 HLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 351 ~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
++.+.+|.++.++..+......
T Consensus 246 ~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 246 NILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHCTTCHHHHHHHC-----
T ss_pred HHHhcCccHHHHHHHhhhhhcc
Confidence 9999999988877776655433
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=4e-16 Score=142.99 Aligned_cols=371 Identities=9% Similarity=0.002 Sum_probs=230.5
Q ss_pred cccCCcchhHHhhcccCC-cChhhHHHHHHHHHhCCCh---HHHHHHHhhchhCCCCCCchhHHHHHHHhhcCC-----C
Q 038550 3 AKSSRPAEASYLFHNIAE-KNIVSWNAMVANFAQNRLE---LKALQLVREMPIHNEFPNSVTLTNVLPACARGH-----F 73 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----~ 73 (423)
.+.|++++|.+.|++..+ .+..++..|...|...|+. ++|.+.|++..+. +...+..+...+...+ +
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcC
Confidence 356788888888888755 4566677777777777777 8888888887753 4555666666444443 6
Q ss_pred CccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHH---HHHHh--chhcCCcchHHHHHHHHhcCCChhhHHHHHHH
Q 038550 74 LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL---AQNVF--NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148 (423)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 148 (423)
+++|...|++..+.|.. + .+..|...|...+..++ +.+.+ .....+...+..|...|...+.++++......
T Consensus 90 ~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 67888888888887632 2 56667777776655433 33333 22234667778888888888866666655444
Q ss_pred HHhcCCCCchhhHHHHHHHHHhHh---hHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc----CCHHHHHHHhccCCC
Q 038550 149 MRLLGMKHDVVSFMGAISACANLA---AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS----GRIDLANKIFDCLPV 221 (423)
Q Consensus 149 m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~ 221 (423)
+.+.-...++..+..+...+...| +.++|...|+...+.|... ...+..+...|... +++++|...|++..+
T Consensus 167 ~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~ 245 (452)
T 3e4b_A 167 ICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-AQRVDSVARVLGDATLGTPDEKTAQALLEKIAP 245 (452)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGG
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcC
Confidence 433322333447777888888888 8888999998888877543 33334466666554 688899998887764
Q ss_pred CChhhHHHHHHH-H--hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHHHHcCCCCC
Q 038550 222 KDSASWNTLILG-Y--GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG-----LVEKGKKYFDEMQADSVKPT 293 (423)
Q Consensus 222 ~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~ 293 (423)
.++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|...|++.. . -+
T Consensus 246 g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~ 317 (452)
T 3e4b_A 246 GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---RE 317 (452)
T ss_dssp GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TC
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CC
Confidence 466777777776 4 46788999999999888776 5667777777666 44 8889999888877 3 34
Q ss_pred hhhHHHHHHHHHh----cCChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcchHHH
Q 038550 294 EMHYACMVDLLGR----AGLMEDAVKLIKNLPVEPDANIWGALLGACRI----YGNVELGAWAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 294 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 365 (423)
...+..|...|.. ..++++|..+|++.-..-+......|...|.. ..+.++|...++.+.+.++........
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~ 397 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLAT 397 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5666667777765 34888999998887323344555566666653 458889999999888877544332222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 038550 366 LSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+......++.++|..+.++..+.
T Consensus 398 ~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 398 QLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHh
Confidence 222223344667777777776654
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=7.1e-15 Score=134.71 Aligned_cols=343 Identities=11% Similarity=-0.000 Sum_probs=235.8
Q ss_pred HHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCC---ccHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 038550 28 AMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL---RPGKEIHARIIRKGLNFDLFLTNALTDMYA 104 (423)
Q Consensus 28 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (423)
.+...+.+.|++++|.++|++..+.| +...+..+...+...|+. ++|...|++..+. ++..+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788999999999999998876 455666677777778888 8999999998854 5566666777555
Q ss_pred hcC-----ChHHHHHHh--chhcCCcchHHHHHHHHhcCCChh---hHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhH
Q 038550 105 KCG-----CLNLAQNVF--NISFRDEVSYNILIVGYSQTSDCS---ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174 (423)
Q Consensus 105 ~~g-----~~~~a~~~~--~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 174 (423)
..+ ++++|...| .....+..++..|...|...+..+ .+.+.+.+....| +......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 555 778999999 333446668888888888776544 4555555555544 344666777777777766
Q ss_pred HhhhHHHHHHHHhccCcchHHHHHHHHHHHhcC---CHHHHHHHhccCC---CCChhhHHHHHHHHhcc----CCHHHHH
Q 038550 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG---RIDLANKIFDCLP---VKDSASWNTLILGYGML----GEVDTAI 244 (423)
Q Consensus 175 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~----g~~~~a~ 244 (423)
+++......+.+.-...++..+..+...|...| +.++|...|++.. .++...+..+...|... +++++|.
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 555555444444333334447778889999999 8999999998764 33445556777777655 7999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-----ChHHHHHH
Q 038550 245 NLFEAMREDGVGYDPVSYIAILTA-C--SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG-----LMEDAVKL 316 (423)
Q Consensus 245 ~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~ 316 (423)
.+|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..|...|. .| ++++|+..
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 9999987 33 45566666665 4 56899999999999999876 5667777777777 55 99999999
Q ss_pred HhhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHh
Q 038550 317 IKNLPVEPDANIWGALLGACRI----YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE----AGKWDEASKVRELMKS 388 (423)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 388 (423)
|++.- .-++.....|...|.. ..++++|...|+++.+.+ ++.....|+.+|.. .++.++|..++++..+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 99998 6678888888877766 349999999999988754 56788888888875 4688999999999888
Q ss_pred ccc
Q 038550 389 REA 391 (423)
Q Consensus 389 ~~~ 391 (423)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 764
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=3.4e-15 Score=127.59 Aligned_cols=242 Identities=10% Similarity=-0.063 Sum_probs=186.8
Q ss_pred hcCCChhhHHHHHHHHHhcCCC---CchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHH
Q 038550 134 SQTSDCSESLSLFSEMRLLGMK---HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 210 (423)
...|++++|+..++++.+.... .+..++..+...+...|++++|...++++.+..+ .+...+..+..+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 3457788889999888875321 1355777888888888999999999988888654 35667788888899999999
Q ss_pred HHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 211 LANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 211 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
+|...|++.. +.+..++..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999988765 346788999999999999999999999999886 34444444455556777999999999988887
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 038550 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361 (423)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 361 (423)
.. +++...+ .++..+...++.++|...+++. ...|+ ...+..+...+...|++++|...++++.+..|.+..
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 63 4444444 4677778888889999999876 33332 577888999999999999999999999999987754
Q ss_pred hHHHHHHHHHhcCChhHHHHHH
Q 038550 362 YYILLSNMYAEAGKWDEASKVR 383 (423)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~ 383 (423)
.+ ..++...|++++|++.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 55677889999988776
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=5.1e-15 Score=121.69 Aligned_cols=194 Identities=14% Similarity=0.025 Sum_probs=83.8
Q ss_pred CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHH
Q 038550 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201 (423)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 201 (423)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 33344444444444444444444444444332 223334444444444444444444444444443221 2223333333
Q ss_pred HHHhc-----------CCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038550 202 FYTRS-----------GRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267 (423)
Q Consensus 202 ~~~~~-----------~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 267 (423)
++... |++++|...|++.. +.+...+..+...+...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 33333 33444443333322 1234444555555555566666666666655554 35555555555
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
++...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666655542 334445555555555556666665555543
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=1.3e-14 Score=129.07 Aligned_cols=244 Identities=9% Similarity=0.044 Sum_probs=161.5
Q ss_pred chHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhh-HHhhhHHHHHHHHhccCcchHHHHHHHHH
Q 038550 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA-IKQGKEIHGVTIRKHLHTHLFVANSILDF 202 (423)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (423)
.+|+.+...+.+.|++++|+..+++.++.. +-+...|..+..++...|+ +++|+..+++++...+. +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 345556666666666666666666666643 3344556666666666664 66666666666665432 34455556666
Q ss_pred HHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCcHHHH
Q 038550 203 YTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH-GGLVEKG 278 (423)
Q Consensus 203 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a 278 (423)
+...|++++|+..|+++. +.+...|..+..++...|++++|+..++++++.... +...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 666666666666666554 345667777777777788888888888888776433 66777777777777 5554666
Q ss_pred -----HHHHHHHHHcCCCCChhhHHHHHHHHHhcC--ChHHHHHHHhhCCCCC-CHhHHHHHHHHHHhcC---------C
Q 038550 279 -----KKYFDEMQADSVKPTEMHYACMVDLLGRAG--LMEDAVKLIKNLPVEP-DANIWGALLGACRIYG---------N 341 (423)
Q Consensus 279 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~~---------~ 341 (423)
+..+++.+... +-+...|..+..++...| ++++|++.+.++...| +...+..+...|.+.| .
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 47777777653 345667777777777776 5778887777764444 4567777777777653 2
Q ss_pred hhHHHHHHHHH-HhcCCCCcchHHHHHHHHH
Q 038550 342 VELGAWAAEHL-FMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 342 ~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~ 371 (423)
.++|+.+++++ .+.+|.....|..++..+.
T Consensus 334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 334 LNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 57888888888 7888888878877766554
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=1.1e-13 Score=118.16 Aligned_cols=225 Identities=10% Similarity=-0.067 Sum_probs=145.2
Q ss_pred CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh----HhhHHhhhHHHHHHHHhccCcchHHHH
Q 038550 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN----LAAIKQGKEIHGVTIRKHLHTHLFVAN 197 (423)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 197 (423)
+..++..+...+...|++++|+..|++..+. -+...+..+...+.. .+++++|...+++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 3445555555566666666666666665552 223344444444444 455555555555444432
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--
Q 038550 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM----LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH-- 271 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-- 271 (423)
+...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 44455555555666 677777777777776653 55666777777776
Q ss_pred --cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCC
Q 038550 272 --GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR----AGLMEDAVKLIKNLPVEPDANIWGALLGACRI----YGN 341 (423)
Q Consensus 272 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 341 (423)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...|++.-...+...+..+...|.. .++
T Consensus 125 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred CcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcc
Confidence 777777777777777654 44556666666766 77777777777766212345666677777777 788
Q ss_pred hhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhccc
Q 038550 342 VELGAWAAEHLFMLKPQHCGYYILLSNMYAE----AGKWDEASKVRELMKSREA 391 (423)
Q Consensus 342 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 391 (423)
+++|...++++.+.+| +..+..++.+|.. .+++++|.+.+++..+.|.
T Consensus 202 ~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 202 FKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8888888888877765 5667777788887 8888888888888777653
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=2.5e-14 Score=120.57 Aligned_cols=191 Identities=8% Similarity=-0.078 Sum_probs=113.9
Q ss_pred HHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 038550 198 SILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL 274 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 274 (423)
.+...+...|++++|...|+++. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|+
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~ 120 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYEQKR 120 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHHhH
Confidence 33344444444444444444332 22344555555666666666666666666655432 245566666666666666
Q ss_pred HHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHH
Q 038550 275 VEKGKKYFDEMQADSVKP-TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEH 351 (423)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 351 (423)
+++|..+++++...+..| +...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|...+++
T Consensus 121 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666666521222 3455556666666666666666666665 2223 455666666677777777777777777
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 352 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
+.+..|.+...+..++..+...|++++|.++++++.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 201 FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777766666777777777777777777777776654
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=9.1e-15 Score=122.44 Aligned_cols=190 Identities=10% Similarity=0.058 Sum_probs=109.2
Q ss_pred HHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 038550 198 SILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL 274 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 274 (423)
.+...+...|++++|...|+++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp --------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhcc
Confidence 33344444444444444444332 2234455555556666666666666666665542 2245566666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 275 VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHL 352 (423)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 352 (423)
+++|...++++.+.. +.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|...++++
T Consensus 107 ~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 107 YKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666553 334555666666666666776666666665 2222 4556666666777777777777777777
Q ss_pred HhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 353 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+..|.++.++..++.+|...|++++|...++++.+.
T Consensus 186 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 186 TEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777777777777777777777777777776653
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=7.4e-14 Score=117.63 Aligned_cols=208 Identities=12% Similarity=0.008 Sum_probs=143.3
Q ss_pred cchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHH
Q 038550 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202 (423)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (423)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 3455666666666666666666666666543 3344455555555555555555555555554432
Q ss_pred HHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 038550 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKY 281 (423)
Q Consensus 203 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 281 (423)
+.+...+..+...+...|++++|...++++.+.+..| +...+..+..++...|++++|...
T Consensus 102 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 102 ------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2244556666667777777777777777776633334 345677777778888888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
++++.+.. +.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|...++++.+..|.+
T Consensus 164 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 164 FEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 88887764 345677788888888888888888888876 3333 56677788888888999999999999999998888
Q ss_pred cchHH
Q 038550 360 CGYYI 364 (423)
Q Consensus 360 ~~~~~ 364 (423)
+....
T Consensus 243 ~~~~~ 247 (252)
T 2ho1_A 243 LEYQE 247 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76544
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=2e-14 Score=122.82 Aligned_cols=215 Identities=11% Similarity=-0.037 Sum_probs=141.4
Q ss_pred HhCCChHHHHHHHhhchhCCCC---CCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChH
Q 038550 34 AQNRLELKALQLVREMPIHNEF---PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN 110 (423)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 110 (423)
...|++++|++.|+++.+.... .+..++..+...+...|++++|...++++++.. +.+..++..+..++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457778888888887765321 134567777777888888888888888887765 446777778888888888888
Q ss_pred HHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHH
Q 038550 111 LAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186 (423)
Q Consensus 111 ~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 186 (423)
+|...| +..+.+..++..+..++...|++++|...++++.+. .|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888 334556777888888888888888888888888774 34444444455555667888888888877766
Q ss_pred hccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCC-------hhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 038550 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD-------SASWNTLILGYGMLGEVDTAINLFEAMRED 253 (423)
Q Consensus 187 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 253 (423)
.... +...+ .++..+...++.++|...++.....+ ..++..+...+...|++++|...|++..+.
T Consensus 173 ~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 173 KSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 5432 22222 25555556666666666665554321 244455555555555555555555555543
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=1.3e-14 Score=121.53 Aligned_cols=207 Identities=10% Similarity=0.025 Sum_probs=139.7
Q ss_pred HHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhcc
Q 038550 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGML 237 (423)
Q Consensus 161 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 237 (423)
+..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...++++. +.+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence 33334444444444444444444443222 123344444455555555555555554432 23556677777888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038550 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317 (423)
Q Consensus 238 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (423)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888764 3367788888888999999999999999988763 456778888889999999999999999
Q ss_pred hhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038550 318 KNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370 (423)
Q Consensus 318 ~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 370 (423)
+++ ...| +..++..+...+...|++++|...++++.+..|.++.++..+....
T Consensus 183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 887 3333 5778889999999999999999999999999999988877765443
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.3e-13 Score=117.81 Aligned_cols=226 Identities=10% Similarity=-0.088 Sum_probs=162.4
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHh--chhcCCcchHHHHHHHHhc----CCChhhHHHHHHHHHhcCCCCchhhHHHH
Q 038550 91 FDLFLTNALTDMYAKCGCLNLAQNVF--NISFRDEVSYNILIVGYSQ----TSDCSESLSLFSEMRLLGMKHDVVSFMGA 164 (423)
Q Consensus 91 ~~~~~~~~l~~~~~~~g~~~~a~~~~--~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 164 (423)
-++.++..+...+...|++++|...| ...+.+..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35677888999999999999999999 2335567788999999999 999999999999999875 66777778
Q ss_pred HHHHHh----HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhc----
Q 038550 165 ISACAN----LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM---- 236 (423)
Q Consensus 165 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~---- 236 (423)
...+.. .+++++|...+++..+.+ +...+. .+...|..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~-------------------------------~lg~~~~~~~~~ 126 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCA-------------------------------SLGGIYHDGKVV 126 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH-------------------------------HHHHHHHHCSSS
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHH-------------------------------HHHHHHHcCCCc
Confidence 888887 888888888888776653 233333 34444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cC
Q 038550 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH----GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR----AG 308 (423)
Q Consensus 237 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 308 (423)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCc
Confidence 566666666666666654 44555666666665 677777777777776653 34556666677777 77
Q ss_pred ChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCC
Q 038550 309 LMEDAVKLIKNLPVEPDANIWGALLGACRI----YGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~ 359 (423)
++++|+..|++.-...+...+..+...|.. .+++++|...++++.+.+|++
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 777777777766111235566667777777 788888888888888877754
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=3.5e-15 Score=132.75 Aligned_cols=245 Identities=10% Similarity=0.073 Sum_probs=203.6
Q ss_pred hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCC-HHHHHHHhccCC---CCChhhHHHHHHH
Q 038550 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR-IDLANKIFDCLP---VKDSASWNTLILG 233 (423)
Q Consensus 158 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~li~~ 233 (423)
...|..+...+.+.|++++|...++++++..+ .+...|..+..++...|+ +++|+..|+++. +.+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34677788888889999999999999998765 356777889999999997 999999999876 4578899999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCChHH
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR-AGLMED 312 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 312 (423)
+...|++++|+..|+++.+.... +...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999987533 78899999999999999999999999999975 4578889999999998 666577
Q ss_pred H-----HHHHhhC-CCCC-CHhHHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---------
Q 038550 313 A-----VKLIKNL-PVEP-DANIWGALLGACRIYG--NVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG--------- 374 (423)
Q Consensus 313 a-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 374 (423)
| +..|++. .+.| +...|..+...+...| ++++|+..++++ +..|+++.++..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4777766 4556 6778988888888888 689999999998 888999999999999998874
Q ss_pred ChhHHHHHHHHH-HhccccCCCCCcccccccceee
Q 038550 375 KWDEASKVRELM-KSREAKKNPGCSWVQTRDEVQD 408 (423)
Q Consensus 375 ~~~~A~~~~~~m-~~~~~~~~~~~~~~~~~~~~~~ 408 (423)
.+++|+++++++ .+. .|.....|......+..
T Consensus 333 ~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 333 ILNKALELCEILAKEK--DTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHH
Confidence 358999999998 553 45555566655554433
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=8.2e-14 Score=115.00 Aligned_cols=194 Identities=13% Similarity=0.035 Sum_probs=122.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038550 195 VANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271 (423)
Q Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 271 (423)
.+..+...+...|++++|...|+.+. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 33444444455555555555544332 2234556666666666677777777776666543 2255566666667777
Q ss_pred c-CcHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHH
Q 038550 272 G-GLVEKGKKYFDEMQADSVKP-TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAW 347 (423)
Q Consensus 272 ~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 347 (423)
. |++++|...++++.+.+..| +...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 7 77777777777766621122 2455666667777777777777777665 2233 45667777777777777777777
Q ss_pred HHHHHHhcCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 348 AAEHLFMLKP-QHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 348 ~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.++++.+..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777777777 77777777777777777777777777776553
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=5.4e-15 Score=134.24 Aligned_cols=260 Identities=12% Similarity=0.032 Sum_probs=161.4
Q ss_pred HHHHHhcCCChhhHHHHHHHHHhcCCCCch----hhHHHHHHHHHhHhhHHhhhHHHHHHHHhc-----cCcchHHHHHH
Q 038550 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDV----VSFMGAISACANLAAIKQGKEIHGVTIRKH-----LHTHLFVANSI 199 (423)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l 199 (423)
+...+...|++++|+..|++..+.+ +.+. ..+..+...+...|++++|...++++.+.. .......+..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3444555555555555555555532 1121 244455555555555555555555544321 11223344455
Q ss_pred HHHHHhcCCHHHHHHHhccCCC---------CChhhHHHHHHHHhccCC-----------------HHHHHHHHHHHHHc
Q 038550 200 LDFYTRSGRIDLANKIFDCLPV---------KDSASWNTLILGYGMLGE-----------------VDTAINLFEAMRED 253 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~ 253 (423)
...|...|++++|...+++... ....++..+...|...|+ +++|...+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 5556666666666655554331 023356666666777777 77777777665432
Q ss_pred ----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHhhC-CC
Q 038550 254 ----GVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSV-KPT----EMHYACMVDLLGRAGLMEDAVKLIKNL-PV 322 (423)
Q Consensus 254 ----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~ 322 (423)
+..+ ...++..+...+...|++++|...+++..+... .++ ...+..+...|...|++++|...+++. ..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1111 234677777778888888888888888776411 011 226777788888888888888888765 11
Q ss_pred C---C----CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 323 E---P----DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH------CGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 323 ~---~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
. . ...++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|...+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1 1 24567778888889999999999999887764332 346778888999999999999999887654
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=1.2e-13 Score=117.69 Aligned_cols=236 Identities=13% Similarity=0.028 Sum_probs=173.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCc--hhhHHHHHHHH
Q 038550 95 LTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD--VVSFMGAISAC 168 (423)
Q Consensus 95 ~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~ 168 (423)
.+......+...|++++|...| +..+.+...+..+..++...|++++|+..+++..+.+..|+ ...|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344556666777777777777 23344566788888888888888888888888887331222 22377888888
Q ss_pred HhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHhccCCHHHHHH
Q 038550 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV---KDSASWNTLILGYGMLGEVDTAIN 245 (423)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~ 245 (423)
...|++++|...++.+.+..+. +...+..+..+|...|++++|...|++... .+...|..+...+...+++++|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999888886543 456778889999999999999999988763 356777777734444569999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHc-CCCCC------hhhHHHHHHHHHhcCChHHHHH
Q 038550 246 LFEAMREDGVGYDPVSYIAILTACSHGGL---VEKGKKYFDEMQAD-SVKPT------EMHYACMVDLLGRAGLMEDAVK 315 (423)
Q Consensus 246 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~-~~~~~------~~~~~~l~~~~~~~~~~~~a~~ 315 (423)
.|+++.+.. +.+...+..+..++...|+ +++|...++++.+. .-.|+ ..+|..+...|...|++++|.+
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999998863 2246777778888888887 88899999888776 22233 2577788899999999999999
Q ss_pred HHhhC-CCCCC-HhHHHHH
Q 038550 316 LIKNL-PVEPD-ANIWGAL 332 (423)
Q Consensus 316 ~~~~~-~~~~~-~~~~~~l 332 (423)
.|+++ .+.|+ ...+..+
T Consensus 243 ~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhcCccHHHHHHHh
Confidence 99987 45563 4444443
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=1.7e-13 Score=113.08 Aligned_cols=203 Identities=11% Similarity=-0.035 Sum_probs=134.6
Q ss_pred HHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhcc-
Q 038550 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGML- 237 (423)
Q Consensus 162 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~- 237 (423)
..+...+...|++++|...++.+.+... .+...+..+..+|...|++++|...++++. +.+..++..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc
Confidence 3333333444444444444444333321 122333444444445555555555544432 23455667777778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 038550 238 GEVDTAINLFEAMREDGVGYD-PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316 (423)
Q Consensus 238 g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 316 (423)
|++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888877333343 5677778888888899999999888888763 34577788888888889999999988
Q ss_pred HhhC-CCC--CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 317 IKNL-PVE--PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 317 ~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
++++ ... .+...+..+...+...|+.+.|..+++.+.+..|.++.....+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 170 FKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 8877 222 4566777777788889999999999999988888887665543
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=8.9e-15 Score=132.42 Aligned_cols=269 Identities=13% Similarity=0.044 Sum_probs=148.1
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHh----chhcCC----cchHHHHHHHHhcCCChhhHHHHHHHHHhc----CCCC-c
Q 038550 91 FDLFLTNALTDMYAKCGCLNLAQNVF----NISFRD----EVSYNILIVGYSQTSDCSESLSLFSEMRLL----GMKH-D 157 (423)
Q Consensus 91 ~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~ 157 (423)
+....+......+...|++++|...| +..+.+ ..+|..+...+...|++++|...+++.... +-.| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34455566667777778888877777 222223 245667777777777777777777776442 1111 1
Q ss_pred hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccC-----cchHHHHHHHHHHHhcCC--------------------HHHH
Q 038550 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLH-----THLFVANSILDFYTRSGR--------------------IDLA 212 (423)
Q Consensus 158 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~--------------------~~~A 212 (423)
..++..+...+...|++++|...+++..+.... ....++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 335566666677777777777777766553211 113355556666666666 6666
Q ss_pred HHHhccCCC-----C----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHH
Q 038550 213 NKIFDCLPV-----K----DSASWNTLILGYGMLGEVDTAINLFEAMREDGV-GYD----PVSYIAILTACSHGGLVEKG 278 (423)
Q Consensus 213 ~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a 278 (423)
...+++... . ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 665554321 1 123455555666666666666666666543210 111 12455555556666666666
Q ss_pred HHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHhhC-C---CCCC----HhHHHHHHHHHHhcCChhHH
Q 038550 279 KKYFDEMQADSV-KPT----EMHYACMVDLLGRAGLMEDAVKLIKNL-P---VEPD----ANIWGALLGACRIYGNVELG 345 (423)
Q Consensus 279 ~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~-~---~~~~----~~~~~~l~~~~~~~~~~~~a 345 (423)
...+++...... .++ ..++..+...|...|++++|...+++. . ..++ ..++..+...+...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 666666554310 011 334555555566666666666665544 0 0111 33455555556666666666
Q ss_pred HHHHHHHHhcCCCC
Q 038550 346 AWAAEHLFMLKPQH 359 (423)
Q Consensus 346 ~~~~~~~~~~~p~~ 359 (423)
...++++.+..+..
T Consensus 327 ~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 327 MHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666555544
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=7.9e-14 Score=111.42 Aligned_cols=166 Identities=14% Similarity=0.096 Sum_probs=145.1
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
++..|..+...|...|++++|+..|++..+.... +..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5677888999999999999999999998886432 67788999999999999999999999988864 445677777888
Q ss_pred HHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 038550 303 LLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 380 (423)
.+...++++.|...+.+. ...| +...+..+...+...|++++|+..++++.+.+|.++.++..++.+|.+.|++++|+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 889999999999999887 3344 67788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 038550 381 KVRELMKSRE 390 (423)
Q Consensus 381 ~~~~~m~~~~ 390 (423)
+.+++..+..
T Consensus 162 ~~~~~al~~~ 171 (184)
T 3vtx_A 162 KYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhCC
Confidence 9999987754
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=2.7e-14 Score=125.51 Aligned_cols=261 Identities=15% Similarity=0.058 Sum_probs=170.1
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHhcCCCCc----hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhc-----cCcchHHHHH
Q 038550 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHD----VVSFMGAISACANLAAIKQGKEIHGVTIRKH-----LHTHLFVANS 198 (423)
Q Consensus 128 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 198 (423)
.....+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...++...... .......+..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 33445555666666666666655542 112 2344555555566666666666665544321 1112344555
Q ss_pred HHHHHHhcCCHHHHHHHhccCCC-----CC----hhhHHHHHHHHhccCC--------------------HHHHHHHHHH
Q 038550 199 ILDFYTRSGRIDLANKIFDCLPV-----KD----SASWNTLILGYGMLGE--------------------VDTAINLFEA 249 (423)
Q Consensus 199 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~ 249 (423)
+...|...|++++|...+++... ++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 56666666666666666654431 11 2356666777777777 7777777776
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHhh
Q 038550 250 MRED----GVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSV-KPT----EMHYACMVDLLGRAGLMEDAVKLIKN 319 (423)
Q Consensus 250 m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (423)
.... +..| ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5432 1111 234677777888889999999999888775410 111 23677788888899999999988877
Q ss_pred C-CC---CCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 320 L-PV---EPD----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH------CGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 320 ~-~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
. .+ .++ ..++..+...+...|++++|...++++.+..+.. ..++..++..|.+.|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6 11 111 4567778888999999999999999998765332 34677899999999999999999999
Q ss_pred HHhc
Q 038550 386 MKSR 389 (423)
Q Consensus 386 m~~~ 389 (423)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8764
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=5.7e-14 Score=127.09 Aligned_cols=269 Identities=10% Similarity=-0.024 Sum_probs=175.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhchhCCCCCC-----chhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHH
Q 038550 25 SWNAMVANFAQNRLELKALQLVREMPIHNEFPN-----SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99 (423)
Q Consensus 25 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 99 (423)
.+......+...|++++|...|++..+.+ |+ ..++..+...+...|++++|...+++.......
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------- 79 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART--------- 79 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---------
Confidence 34444555555566666666665555432 22 123444444555555555555555544322000
Q ss_pred HHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcC----CC-CchhhHHHHHHHHHhHhh-
Q 038550 100 TDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG----MK-HDVVSFMGAISACANLAA- 173 (423)
Q Consensus 100 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~-~~~~~~~~ll~~~~~~~~- 173 (423)
.++ .+....++..+...+...|++++|...+++..+.. -. ....++..+...+...|+
T Consensus 80 ------~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 143 (406)
T 3sf4_A 80 ------IGD----------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 143 (406)
T ss_dssp ------TTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------ccc----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCc
Confidence 000 00112345556666666677777776666655421 01 113467778888888899
Q ss_pred -------------------HHhhhHHHHHHHHhc-----cCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----CC-
Q 038550 174 -------------------IKQGKEIHGVTIRKH-----LHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-----KD- 223 (423)
Q Consensus 174 -------------------~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~- 223 (423)
+++|...++...+.. ......++..+...|...|++++|...+++... ++
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (406)
T 3sf4_A 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 223 (406)
T ss_dssp CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc
Confidence 899998888776531 112245677888999999999999999987651 22
Q ss_pred ---hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CCC-
Q 038550 224 ---SASWNTLILGYGMLGEVDTAINLFEAMREDGVG-YD----PVSYIAILTACSHGGLVEKGKKYFDEMQADSV-KPT- 293 (423)
Q Consensus 224 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~- 293 (423)
..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++...... ..+
T Consensus 224 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 303 (406)
T 3sf4_A 224 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR 303 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc
Confidence 237888899999999999999999998753211 12 45788888999999999999999999876511 111
Q ss_pred ---hhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 294 ---EMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 294 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
..++..+...|...|++++|.+.+++.
T Consensus 304 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 304 IGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 557778889999999999999998875
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.58 E-value=2.6e-14 Score=131.82 Aligned_cols=210 Identities=8% Similarity=-0.061 Sum_probs=172.9
Q ss_pred hHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCH-HHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHH
Q 038550 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI-DLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFE 248 (423)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~ 248 (423)
.++.+...++...... +.+...+..+..++...|++ ++|...|++.. +.+...|..+...|...|++++|...|+
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555555444322 23556666777777778888 88888777654 3457788889999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--------CChH
Q 038550 249 AMREDGVGYDPVSYIAILTACSHG---------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA--------GLME 311 (423)
Q Consensus 249 ~m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 311 (423)
+..+. .|+...+..+..++... |++++|...++++.+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99886 46778889999999999 99999999999999874 45678888999999888 9999
Q ss_pred HHHHHHhhC-CCCC----CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 312 DAVKLIKNL-PVEP----DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 312 ~a~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
+|+..|++. .+.| +...|..+..+|...|++++|...|+++.+..|.++.++..++.++...|++++|++.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999988 4455 78899999999999999999999999999999999999999999999999999999765544
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=2.7e-13 Score=123.00 Aligned_cols=271 Identities=14% Similarity=0.037 Sum_probs=164.0
Q ss_pred hHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCch----HHHHHHHHHHHhcCChHHHHHHhc----h------hcCCcch
Q 038550 60 TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDL----FLTNALTDMYAKCGCLNLAQNVFN----I------SFRDEVS 125 (423)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~----~------~~~~~~~ 125 (423)
.+..+...+...|++++|...++++++.+. .+. .++..+..+|...|++++|...|+ . .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344455566777788888888877777642 222 456677777777788887777771 1 1223456
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHhc----CC-CCchhhHHHHHHHHHhHhh-----------------HHhhhHHHHH
Q 038550 126 YNILIVGYSQTSDCSESLSLFSEMRLL----GM-KHDVVSFMGAISACANLAA-----------------IKQGKEIHGV 183 (423)
Q Consensus 126 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~ 183 (423)
+..+...|...|++++|...+++..+. +- +....++..+...+...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 777778888888888888888776653 11 1223466777778888888 7777777666
Q ss_pred HHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----
Q 038550 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV-GYD---- 258 (423)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~---- 258 (423)
..+.... .++.. ....++..+...+...|++++|...+++..+... .++
T Consensus 209 al~~~~~---------------~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (411)
T 4a1s_A 209 NLKLMRD---------------LGDRG-----------AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE 262 (411)
T ss_dssp HHHHHHH---------------HTCHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHH---------------cCCHH-----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH
Confidence 5442100 00000 0122444455555556666666666555543210 001
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC--CC---CChhhHHHHHHHHHhcCChHHHHHHHhhC-C------CCC-C
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADS--VK---PTEMHYACMVDLLGRAGLMEDAVKLIKNL-P------VEP-D 325 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~------~~~-~ 325 (423)
..++..+...|...|++++|...+++..... .. ....++..+...|...|++++|...+++. . ..+ .
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 342 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHH
Confidence 1256666666777777777777777666541 00 11345666777777777777777777665 1 111 2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
..++..+...|...|++++|...++++.+..+
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 34666777788888888888888888877654
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=4.9e-13 Score=117.44 Aligned_cols=280 Identities=10% Similarity=-0.001 Sum_probs=147.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhchhCCCCCC-----chhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHH
Q 038550 26 WNAMVANFAQNRLELKALQLVREMPIHNEFPN-----SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100 (423)
Q Consensus 26 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (423)
+......+...|++++|...|+++.+.. |+ ...+..+...+...|++++|...+++..+....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------- 75 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART---------- 75 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc----------
Confidence 3344455666666666666666665542 22 134445555555566666666655554432000
Q ss_pred HHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCC-CCc----hhhHHHHHHHHHhHhh--
Q 038550 101 DMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM-KHD----VVSFMGAISACANLAA-- 173 (423)
Q Consensus 101 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~-- 173 (423)
.++ .+....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 76 -----~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 140 (338)
T 3ro2_A 76 -----IGD----------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 140 (338)
T ss_dssp -----HTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred -----ccc----------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccc
Confidence 000 001123455556666666666666666666543210 011 2366667777777777
Q ss_pred ------------------HHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHh
Q 038550 174 ------------------IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235 (423)
Q Consensus 174 ------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 235 (423)
+++|...++........ .++.. ....++..+...+.
T Consensus 141 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~---------------~~~~~-----------~~~~~~~~l~~~~~ 194 (338)
T 3ro2_A 141 GCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA---------------LGDRA-----------AQGRAFGNLGNTHY 194 (338)
T ss_dssp SSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH---------------HTCHH-----------HHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh---------------cCCHH-----------HHHHHHHHHHHHHH
Confidence 67777666655432100 00000 01123444445555
Q ss_pred ccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHH
Q 038550 236 MLGEVDTAINLFEAMRED----GVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSV-KPT----EMHYACMVDLLG 305 (423)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~ 305 (423)
..|++++|...+++..+. +..+ ...++..+...+...|++++|...+++...... ..+ ..++..+...|.
T Consensus 195 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 274 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 555555555555554332 1000 122556666666777777777777766654310 011 445666667777
Q ss_pred hcCChHHHHHHHhhC-------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 306 RAGLMEDAVKLIKNL-------PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
..|++++|...+++. +..+ ...++..+...+...|++++|...++++.+..+.
T Consensus 275 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 777777777777655 1111 1346667777888888888888888888776543
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=6.2e-13 Score=106.15 Aligned_cols=166 Identities=11% Similarity=0.003 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038550 193 LFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269 (423)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 269 (423)
..+|..+...|.+.|++++|+..|++.. +.+..++..+..+|.+.|++++|...+......... +...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHH
Confidence 3455556666666666666666665543 335667777778888888888888888887775432 566777777778
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHH
Q 038550 270 SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAW 347 (423)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 347 (423)
...++++.|...+.+..... +.+...+..+...|.+.|++++|++.|++. .+.| +..+|..+..+|...|++++|+.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 88888888888888887763 456777888888888889999998888877 4445 67788888889999999999999
Q ss_pred HHHHHHhcCCCCc
Q 038550 348 AAEHLFMLKPQHC 360 (423)
Q Consensus 348 ~~~~~~~~~p~~~ 360 (423)
.|+++.+.+|.++
T Consensus 163 ~~~~al~~~p~~a 175 (184)
T 3vtx_A 163 YFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHTTHHHH
T ss_pred HHHHHHhCCccCH
Confidence 9999998888653
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=2.5e-12 Score=115.47 Aligned_cols=195 Identities=10% Similarity=-0.010 Sum_probs=106.0
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccC------cchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----CC----h
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLH------THLFVANSILDFYTRSGRIDLANKIFDCLPV-----KD----S 224 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~ 224 (423)
++..+...+...|+++.|...+++..+.... ....++..+..+|...|++++|...|++... ++ .
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 4444444455555555555555444432111 1123445555566666666666665554331 11 2
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC----CCCChh
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMRED----GV-GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS----VKPTEM 295 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ 295 (423)
.++..+...|...|++++|...+++..+. +. +....++..+..++...|++++|...+++..+.. -+....
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35666777788888888888888777652 22 2234567777788888888888888887776541 111122
Q ss_pred hHHHHHHHHHhcCC---hHHHHHHHhhCCCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 296 HYACMVDLLGRAGL---MEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 296 ~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
.+..+...|...|+ +++|+.++++.+..|+ ...+..+...|...|++++|...++++.+
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23445555555666 5566666665543332 22344444455555555555555555444
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=1.1e-12 Score=117.86 Aligned_cols=227 Identities=10% Similarity=-0.040 Sum_probs=172.9
Q ss_pred HHHHHHhHhhHHhhhHHHHHHHHhc----cCc-chHHHHHHHHHHHhcCCHHHHHHHhccCCC-----C-----ChhhHH
Q 038550 164 AISACANLAAIKQGKEIHGVTIRKH----LHT-HLFVANSILDFYTRSGRIDLANKIFDCLPV-----K-----DSASWN 228 (423)
Q Consensus 164 ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-----~~~~~~ 228 (423)
....+...|++++|...+++..+.- ..+ ...++..+..+|...|+++.|...+++... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4556677888999999988887641 111 346778889999999999999888876541 1 235788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CC-CCChhhHH
Q 038550 229 TLILGYGMLGEVDTAINLFEAMREDGV-GYD----PVSYIAILTACSHGGLVEKGKKYFDEMQAD----SV-KPTEMHYA 298 (423)
Q Consensus 229 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 298 (423)
.+...|...|++++|...+++..+... .++ ..++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999998765311 112 247888999999999999999999998873 22 33466788
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CC-----CC-CHhHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 299 CMVDLLGRAGLMEDAVKLIKNL-PV-----EP-DANIWGALLGACRIYGN---VELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~-~~-----~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
.+...|.+.|++++|...+++. .+ .| ....+..+...+...|+ +++|+.++++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8999999999999999999876 11 22 22335667788888898 77777777775 223444567888999
Q ss_pred HHHhcCChhHHHHHHHHHHhccc
Q 038550 369 MYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
.|...|++++|...+++..+..-
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999876543
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=1.6e-11 Score=106.60 Aligned_cols=218 Identities=12% Similarity=0.110 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH-------hhH-------HhhhHHHHHHHHhccCcchHHHHHHHHHHHh
Q 038550 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANL-------AAI-------KQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205 (423)
Q Consensus 140 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-------~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (423)
++|..+|++..... +-+...|..++..+... |++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666676666642 33455555555554422 433 5666666666552112233455555555666
Q ss_pred cCCHHHHHHHhccCCC--C-Chh-hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHHHH
Q 038550 206 SGRIDLANKIFDCLPV--K-DSA-SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC-SHGGLVEKGKK 280 (423)
Q Consensus 206 ~~~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~ 280 (423)
.|++++|..+|++... | +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666655432 2 232 566666666666666666666666665432 2333333222221 12466666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-C---CCC--CHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-P---VEP--DANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~---~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
+|++..+.. +-+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++++.+
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666542 334555666666666666666666666655 1 233 244566666666666666666666666666
Q ss_pred cCCCCc
Q 038550 355 LKPQHC 360 (423)
Q Consensus 355 ~~p~~~ 360 (423)
..|++.
T Consensus 270 ~~p~~~ 275 (308)
T 2ond_A 270 AFREEY 275 (308)
T ss_dssp HTTTTT
T ss_pred Hccccc
Confidence 666543
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.50 E-value=8.8e-13 Score=126.53 Aligned_cols=165 Identities=16% Similarity=0.132 Sum_probs=143.4
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
+..+|+.+...|.+.|++++|++.|++..+.... +..++..+..+|.+.|++++|...|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567888888999999999999999998886322 57788899999999999999999999998864 345778889999
Q ss_pred HHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 038550 303 LLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 380 (423)
+|...|++++|++.|++. .+.| +...|..+...+...|++++|+..|+++.+++|+++.++..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 999999999999999887 5566 57789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 038550 381 KVRELMKSR 389 (423)
Q Consensus 381 ~~~~~m~~~ 389 (423)
+.+++..+.
T Consensus 166 ~~~~kal~l 174 (723)
T 4gyw_A 166 ERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998887653
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=5.5e-14 Score=122.25 Aligned_cols=236 Identities=12% Similarity=0.063 Sum_probs=120.9
Q ss_pred CcchHHHHHHHHhcCCChhhHHHHHHHHHhc-------CCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhc------
Q 038550 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLL-------GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH------ 188 (423)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------ 188 (423)
+..++..+...+...|++++|...++++.+. ..+.....+..+...+...|++++|...++++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456777888888888888888888888763 222334566677777777788888888777766531
Q ss_pred -cCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHc------CCCC-CHH
Q 038550 189 -LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED------GVGY-DPV 260 (423)
Q Consensus 189 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~ 260 (423)
.+.....+..+...|...|++++|...++ +..+. +..| ...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------------------~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCK-------------------------------RALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHH-------------------------------HHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHH-------------------------------HHHHHHHHhcCCCChHHHH
Confidence 11223444455555555555555555554 33321 1111 122
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHc------CCCC-ChhhHHHHHHHHHhcCChHHHHHHHhhCC----------CC
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQAD------SVKP-TEMHYACMVDLLGRAGLMEDAVKLIKNLP----------VE 323 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~ 323 (423)
.+..+...+...|++++|..+++++... +..| ...++..+...|...|++++|...++++- ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3444444444445555555444444432 0011 12234444444445555555554444330 00
Q ss_pred C-------CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 324 P-------DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 324 ~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
+ ....+..+...+...+.+.++...++......|....++..++.+|.+.|++++|.+++++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 0111222223334455556666666666666677777777788888888888888888777655
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=2e-12 Score=103.06 Aligned_cols=161 Identities=15% Similarity=0.108 Sum_probs=103.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038550 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307 (423)
Q Consensus 228 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (423)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 333444444445555554444444321 1234445555555555555555555555555542 33445555556666666
Q ss_pred CChHHHHHHHhhC-CC-CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 308 GLMEDAVKLIKNL-PV-EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 308 ~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
|++++|.+.++++ .. ..+...+..+...+...|++++|...++++.+..|.++.++..++..+...|++++|...+++
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666655 11 235566777777888888888888888888888888888888888889999999999999888
Q ss_pred HHhcc
Q 038550 386 MKSRE 390 (423)
Q Consensus 386 m~~~~ 390 (423)
..+..
T Consensus 170 ~~~~~ 174 (186)
T 3as5_A 170 ANELD 174 (186)
T ss_dssp HHHHH
T ss_pred HHHcC
Confidence 87654
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=2.4e-13 Score=118.14 Aligned_cols=245 Identities=12% Similarity=0.040 Sum_probs=156.3
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHh-ch-----------hcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhc-----
Q 038550 90 NFDLFLTNALTDMYAKCGCLNLAQNVF-NI-----------SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL----- 152 (423)
Q Consensus 90 ~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----- 152 (423)
+.+..++..+...+...|++++|...| +. .+....++..+...|...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 334678889999999999999999999 21 1223456888999999999999999999998764
Q ss_pred -CCCC-chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHH
Q 038550 153 -GMKH-DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230 (423)
Q Consensus 153 -~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 230 (423)
+-.| ...++..+...+...|++++|...++++.+..... .... .......+..+
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------~~~~------------~~~~~~~~~~l 159 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV------------LGKD------------HPDVAKQLNNL 159 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH------------HCTT------------CHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh------------cCCC------------ChHHHHHHHHH
Confidence 2223 35678888899999999999999999887642000 0000 00012344555
Q ss_pred HHHHhccCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-------CCCCChhh
Q 038550 231 ILGYGMLGEVDTAINLFEAMRED------GVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQAD-------SVKPTEMH 296 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~ 296 (423)
...+...|++++|...++++.+. +..| ...++..+..++...|++++|...++++.+. ...+....
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 56666666677776666666543 1122 2346677777788888888888888777753 11122111
Q ss_pred -------HHHHHHHHHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 297 -------YACMVDLLGRAGLMEDAVKLIKNLP-VEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 297 -------~~~l~~~~~~~~~~~~a~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
+..+...+...+.+.++...++... ..| +..++..+...|...|++++|...++++.++.|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 2222233344455666666666663 334 4567888999999999999999999999887664
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.47 E-value=6.6e-11 Score=105.78 Aligned_cols=259 Identities=10% Similarity=-0.041 Sum_probs=135.8
Q ss_pred HHHhcCCChhhHHHHHHHHHhcCCCCchh----hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc-----hHHHHHHHH
Q 038550 131 VGYSQTSDCSESLSLFSEMRLLGMKHDVV----SFMGAISACANLAAIKQGKEIHGVTIRKHLHTH-----LFVANSILD 201 (423)
Q Consensus 131 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~ 201 (423)
..+...|++++|...+++........+.. .+..+...+...|++++|...+++......... ...+..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 33444555555655555555432111111 233444455555666666666655544221110 122334555
Q ss_pred HHHhcCCHHHHHHHhccCC-------C---C-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHH
Q 038550 202 FYTRSGRIDLANKIFDCLP-------V---K-DSASWNTLILGYGMLGEVDTAINLFEAMREDGVG--Y--DPVSYIAIL 266 (423)
Q Consensus 202 ~~~~~~~~~~A~~~~~~~~-------~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~~~~ll 266 (423)
.+...|++++|...+++.. . + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 5666666666666555432 1 1 1223445556666677777777777766543211 1 123455566
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHhcCChHHHHHHHhhC-CCCCC-----HhHHHHHHH
Q 038550 267 TACSHGGLVEKGKKYFDEMQADSVKPTE-MHYA-----CMVDLLGRAGLMEDAVKLIKNL-PVEPD-----ANIWGALLG 334 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~l~~ 334 (423)
..+...|++++|...+++.....-.++. ..+. ..+..+...|++++|...+++. ...|. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 6667777777777777766544111111 1111 1223355677777777777666 21121 223455566
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 335 ACRIYGNVELGAWAAEHLFMLKPQ------HCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 335 ~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+...|++++|...++++....+. ...++..++.++...|++++|...+++....
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 677777777777777776554321 1124555666677777777777777766543
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=4.3e-11 Score=103.90 Aligned_cols=209 Identities=12% Similarity=0.006 Sum_probs=110.0
Q ss_pred ccHHHHHHHHHHcCCCCchHHHHHHHHHHH-------hcCCh-------HHHHHHh----c-hhcCCcchHHHHHHHHhc
Q 038550 75 RPGKEIHARIIRKGLNFDLFLTNALTDMYA-------KCGCL-------NLAQNVF----N-ISFRDEVSYNILIVGYSQ 135 (423)
Q Consensus 75 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~----~-~~~~~~~~~~~l~~~~~~ 135 (423)
+.|..+|++++... +.++..|..++..+. +.|++ ++|..+| . ..+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666666553 445556666655554 24665 6676666 2 233345567777777777
Q ss_pred CCChhhHHHHHHHHHhcCCCCc-hh-hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHH-HhcCCHHHH
Q 038550 136 TSDCSESLSLFSEMRLLGMKHD-VV-SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY-TRSGRIDLA 212 (423)
Q Consensus 136 ~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A 212 (423)
.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|+...+..+. +...|....... ...|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 77888888888877763 443 32 6777777777777777777777777765432 222222221111 113444444
Q ss_pred HHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 213 NKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDG-VGY--DPVSYIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 213 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
..+|++.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444332 1233444444444444444444444444444431 222 22334444444444444444444444444
Q ss_pred H
Q 038550 287 A 287 (423)
Q Consensus 287 ~ 287 (423)
+
T Consensus 269 ~ 269 (308)
T 2ond_A 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.46 E-value=1.3e-10 Score=110.29 Aligned_cols=369 Identities=8% Similarity=-0.072 Sum_probs=220.6
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCC---CccHHHHHHHHHHcC-CCCchHHH
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF---LRPGKEIHARIIRKG-LNFDLFLT 96 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~ 96 (423)
.|..+|..++..+.+.+.++.+..+|+.+... .+.+...|...+..-.+.++ ++.+..+|++.+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 36667777777777777777777777777765 34455566666666666666 777777777777553 13666666
Q ss_pred HHHHHHHHhcCCh--------HHHHHHhc-------h-hcCCcchHHHHHHHHhc---------CCChhhHHHHHHHHHh
Q 038550 97 NALTDMYAKCGCL--------NLAQNVFN-------I-SFRDEVSYNILIVGYSQ---------TSDCSESLSLFSEMRL 151 (423)
Q Consensus 97 ~~l~~~~~~~g~~--------~~a~~~~~-------~-~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~ 151 (423)
...+....+.++. +...++|+ . ...+...|...+..... .++++.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 6666555444443 22234441 1 12233456555544332 2235556666666664
Q ss_pred cCCCCchhhHH---HHHHHH----------HhHhhHHhh-----------------------------------------
Q 038550 152 LGMKHDVVSFM---GAISAC----------ANLAAIKQG----------------------------------------- 177 (423)
Q Consensus 152 ~~~~~~~~~~~---~ll~~~----------~~~~~~~~a----------------------------------------- 177 (423)
.....-..+|. .....+ -....++.|
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 21110111111 110000 000111112
Q ss_pred --------------------------hHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHH-HHhccCC---CCChhhH
Q 038550 178 --------------------------KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN-KIFDCLP---VKDSASW 227 (423)
Q Consensus 178 --------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~---~~~~~~~ 227 (423)
..+|++++... +.....|-..+..+...|+.++|. .+|++.. +.+...|
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 22233333321 123334444455555667777775 7776654 3355567
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 228 NTLILGYGMLGEVDTAINLFEAMREDGV---------GYD------------PVSYIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 228 ~~li~~~~~~g~~~~a~~~~~~m~~~~~---------~p~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
-..+...-+.|+++.|..+|+.+..... .|+ ...|...+....+.|+.+.|..+|.++.
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777888899999999988876310 132 2356777777777888899999999988
Q ss_pred Hc-CCCCChhhHHHHHHHHHhc-CChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---C
Q 038550 287 AD-SVKPTEMHYACMVDLLGRA-GLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ---H 359 (423)
Q Consensus 287 ~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~ 359 (423)
+. + ......|...+..-.+. ++.+.|..+|+.. ...-+...|..++......|+.+.|..+|+++....|+ .
T Consensus 462 ~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred HhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 75 2 22333443333333344 4588999888876 22235667778888888889999999999999887763 4
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhcccc
Q 038550 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392 (423)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 392 (423)
..+|..++..-.+.|+.+.+..+.+++.+....
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 466778888788889999999999998876543
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=1.4e-11 Score=110.34 Aligned_cols=219 Identities=10% Similarity=-0.032 Sum_probs=127.9
Q ss_pred HhHhhHHhhhHHHHHHHHhcc-----CcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----C-----ChhhHHHHHHH
Q 038550 169 ANLAAIKQGKEIHGVTIRKHL-----HTHLFVANSILDFYTRSGRIDLANKIFDCLPV-----K-----DSASWNTLILG 233 (423)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-----~~~~~~~li~~ 233 (423)
...|++++|...++++.+... .....++..+..+|...|+++.|...+++... + ...+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 344455555555554443211 01123344455555555555555554443320 1 13356666677
Q ss_pred HhccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCCCChhhHHHHHHHH
Q 038550 234 YGMLGEVDTAINLFEAMRED----GVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQAD----SVKPTEMHYACMVDLL 304 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~ 304 (423)
|...|++++|...+++..+. +-.+ ...++..+..+|...|++++|...+++.... +.+....++..+...|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 77777777777777765542 1111 1245666777777788888888888777662 2222356667777778
Q ss_pred HhcCChHHHHHHHhhC----CC--CC-CHhHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 305 GRAGLMEDAVKLIKNL----PV--EP-DANIWGALLGACRIYGN---VELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 305 ~~~~~~~~a~~~~~~~----~~--~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
.+.|++++|...+++. .. .| ....+..+...+...++ +.+|+..+++. ...|.....+..++..|...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 8888888888777765 11 12 23344555556666677 66666666652 122333456677888888888
Q ss_pred ChhHHHHHHHHHHh
Q 038550 375 KWDEASKVRELMKS 388 (423)
Q Consensus 375 ~~~~A~~~~~~m~~ 388 (423)
++++|...+++..+
T Consensus 351 ~~~~A~~~~~~al~ 364 (378)
T 3q15_A 351 HFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888888765
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=9.9e-12 Score=114.58 Aligned_cols=190 Identities=8% Similarity=-0.114 Sum_probs=108.8
Q ss_pred chHHHHHHHHHHHhcCCh-HHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHH
Q 038550 92 DLFLTNALTDMYAKCGCL-NLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS 166 (423)
Q Consensus 92 ~~~~~~~l~~~~~~~g~~-~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 166 (423)
+...+..+..++...|++ ++|++.| +..+.+..+|..+..+|...|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 344444455555555555 5555555 222334445555555555555555555555555543 344445555555
Q ss_pred HHHhH---------hhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc--------CCHHHHHHHhccCC---C---CC
Q 038550 167 ACANL---------AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS--------GRIDLANKIFDCLP---V---KD 223 (423)
Q Consensus 167 ~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~---~---~~ 223 (423)
.+... |++++|...++++.+..+ .+...+..+..+|... |++++|...|++.. + .+
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 55555 555555555555555432 2244445555555555 55666666555443 1 35
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 038550 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 285 (423)
...|..+..+|...|++++|...|++..+... -+...+..+..++...|++++|...+.++
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56677777777777788888888877776532 24556777777777777777777665544
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.41 E-value=8.2e-12 Score=103.36 Aligned_cols=189 Identities=12% Similarity=-0.045 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhccCC---C-CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038550 193 LFVANSILDFYTRSGRIDLANKIFDCLP---V-KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268 (423)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 268 (423)
+..+......+...|++++|...|++.. + ++...+..+..++...|++++|+..+++..+.... +...+..+..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 3455556666666666666666666543 2 45555555666666666666666666666654221 34456666666
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC---HhHHHHHHHHHH
Q 038550 269 CSHGGLVEKGKKYFDEMQADSVKPTE-------MHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD---ANIWGALLGACR 337 (423)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~ 337 (423)
+...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|++. ...|+ ...+..+...+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 666666666666666666642 2223 33555555666666666666666655 44454 334445555543
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 338 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.. +...++++....+.++..+.... ....+.+++|+..+++..+..
T Consensus 165 ~~-----~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 165 NN-----GADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HH-----HHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HH-----HHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 33 23344555555544444433332 334455699999999988754
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=3.6e-11 Score=95.63 Aligned_cols=168 Identities=13% Similarity=-0.008 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038550 193 LFVANSILDFYTRSGRIDLANKIFDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269 (423)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 269 (423)
...+..+...+...|++++|...++++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34456677888899999999999998763 367788889999999999999999999998763 33678888899999
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHH
Q 038550 270 SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAW 347 (423)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 347 (423)
...|++++|...++++.... +.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998874 557788888999999999999999999887 3333 67888999999999999999999
Q ss_pred HHHHHHhcCCCCcch
Q 038550 348 AAEHLFMLKPQHCGY 362 (423)
Q Consensus 348 ~~~~~~~~~p~~~~~ 362 (423)
.++++.+..|.+...
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999988776543
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=3.4e-11 Score=99.60 Aligned_cols=205 Identities=9% Similarity=0.016 Sum_probs=160.7
Q ss_pred CCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHH
Q 038550 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLI 231 (423)
Q Consensus 155 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li 231 (423)
+.|+..+......+...|++++|...|+...+....++...+..+..++...|++++|...|++.. +.+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 346678888999999999999999999999998765666777779999999999999999998765 33567899999
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC---hhhHHHHH
Q 038550 232 LGYGMLGEVDTAINLFEAMREDGVGYDP-------VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT---EMHYACMV 301 (423)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 301 (423)
..+...|++++|...+++..+... .+. ..|..+...+...|++++|...|+++.+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 999999999999999999988642 244 45788888899999999999999999885 344 56777777
Q ss_pred HHHHhcCChHHHHHHHhhC-C-CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 038550 302 DLLGRAGLMEDAVKLIKNL-P-VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNM 369 (423)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 369 (423)
.+|...|+. .++++ . ...+...+.... ....+.+++|+..++++.+..|.++.+...+...
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 887766543 22222 1 122344444433 3455678999999999999999998887776554
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=1.3e-10 Score=104.15 Aligned_cols=195 Identities=9% Similarity=-0.002 Sum_probs=127.2
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccC------cchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----C----Ch
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLH------THLFVANSILDFYTRSGRIDLANKIFDCLPV-----K----DS 224 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~ 224 (423)
++..+...+...|+++.|...+++..+.... ....+++.+..+|...|++++|...|++... + ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444455555555555555444432110 1123444555555566666665555544321 1 12
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC----CCChh
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMRE-----DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV----KPTEM 295 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~ 295 (423)
.++..+...|...|++++|...+++..+ .. +....++..+..++.+.|++++|...+++..+... +....
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4567777888888888888888888776 32 22366788888899999999999999999887521 11233
Q ss_pred hHHHHHHHHHhcCC---hHHHHHHHhhCCCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 296 HYACMVDLLGRAGL---MEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFML 355 (423)
Q Consensus 296 ~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 355 (423)
.+..+...|...++ +.+|+..+++.+..|+ ...+..+...|...|++++|...++++.+.
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45555566667777 8899999998764443 346677888999999999999999988764
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=4.4e-10 Score=100.40 Aligned_cols=261 Identities=8% Similarity=-0.048 Sum_probs=146.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhchhCCCCCCch----hHHHHHHHhhcCCCCccHHHHHHHHHHcCCC-Cc----hHHH
Q 038550 26 WNAMVANFAQNRLELKALQLVREMPIHNEFPNSV----TLTNVLPACARGHFLRPGKEIHARIIRKGLN-FD----LFLT 96 (423)
Q Consensus 26 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 96 (423)
+......+...|++++|...+++........+.. ++..+...+...|+++.|...+++....... ++ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556778899999999998877653211221 4555666677889999999888887653211 11 2335
Q ss_pred HHHHHHHHhcCChHHHHHHhc----hh----c---C-CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCC--C--chhh
Q 038550 97 NALTDMYAKCGCLNLAQNVFN----IS----F---R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK--H--DVVS 160 (423)
Q Consensus 97 ~~l~~~~~~~g~~~~a~~~~~----~~----~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~--~~~~ 160 (423)
..+...+...|++++|...++ .. . + ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 566777788888888887771 11 1 1 1234556667777788888888888777654211 1 1234
Q ss_pred HHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc--hHHHH----HHHHHHHhcCCHHHHHHHhccCCCCC-------hhhH
Q 038550 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTH--LFVAN----SILDFYTRSGRIDLANKIFDCLPVKD-------SASW 227 (423)
Q Consensus 161 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~ 227 (423)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++....+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 55666677777777777777777665422211 11111 12233556666666666666554321 1123
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 228 NTLILGYGMLGEVDTAINLFEAMRED----GVGYDP-VSYIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 228 ~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44445555555555555555554321 111111 133333444445555555555554444
No 83
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.32 E-value=3.2e-09 Score=100.84 Aligned_cols=356 Identities=6% Similarity=-0.050 Sum_probs=229.6
Q ss_pred ccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCC---hHHHHHHHhhchhCC-CCCCchhHHHHHHHhhcCCCC--
Q 038550 4 KSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRL---ELKALQLVREMPIHN-EFPNSVTLTNVLPACARGHFL-- 74 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~-- 74 (423)
+.|.++.+..+|+++.. .+...|...+..-.+.++ ++.+.++|++..... .+|+...|..-+....+.++.
T Consensus 78 ~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~ 157 (679)
T 4e6h_A 78 SLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIIT 157 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTT
T ss_pred hcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccc
Confidence 34677788888888765 345567777777777777 888888888887653 136777777766655544443
Q ss_pred ------ccHHHHHHHHHH-cCC-CCc-hHHHHHHHHHHH---------hcCChHHHHHHh-c-hhcCCc---chH-----
Q 038550 75 ------RPGKEIHARIIR-KGL-NFD-LFLTNALTDMYA---------KCGCLNLAQNVF-N-ISFRDE---VSY----- 126 (423)
Q Consensus 75 ------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~---------~~g~~~~a~~~~-~-~~~~~~---~~~----- 126 (423)
+.+.++|+..+. .|. .++ ...|...+.... ..++++.+..+| . ...|.. .+|
T Consensus 158 ~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~ 237 (679)
T 4e6h_A 158 GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ 237 (679)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 223466666553 354 443 456666655432 223455566666 1 111100 011
Q ss_pred --------------------------------------------------------------------HHHHHHHhcCC-
Q 038550 127 --------------------------------------------------------------------NILIVGYSQTS- 137 (423)
Q Consensus 127 --------------------------------------------------------------------~~l~~~~~~~~- 137 (423)
...+..--..+
T Consensus 238 fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 238 WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp HHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred HHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 11111100000
Q ss_pred ------ChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhh-HHHHHHHHhccCcchHHHHHHHHHHHhcCCHH
Q 038550 138 ------DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK-EIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210 (423)
Q Consensus 138 ------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 210 (423)
..+.+..+|++.+.. ++-+...|...+..+...|+.+.|. .+++..... .+.+...+-..+....+.|+++
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHH
Confidence 011122334444433 1233444545555556677888886 999998864 3445666777888889999999
Q ss_pred HHHHHhccCCC-------------CC------------hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038550 211 LANKIFDCLPV-------------KD------------SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265 (423)
Q Consensus 211 ~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 265 (423)
.|.++|+.+.. |+ ..+|...+....+.|+.+.|..+|.+..+.-..+....|...
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~ 475 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 99999987752 21 235777788878889999999999999876111223344433
Q ss_pred HHHHhc-cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC----CHhHHHHHHHHHHhc
Q 038550 266 LTACSH-GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP----DANIWGALLGACRIY 339 (423)
Q Consensus 266 l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~----~~~~~~~l~~~~~~~ 339 (423)
+..-.+ .++.+.|..+|+...+. ++.+...+...++.....|+.+.|..+|++. ...| ....|..++..-...
T Consensus 476 A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 476 AYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 333233 35689999999999987 4556677778888888899999999999987 3334 346888888888999
Q ss_pred CChhHHHHHHHHHHhcCCCCcch
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
|+.+.+..+.+++.+..|+++.+
T Consensus 555 G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 555 GSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp CCSHHHHHHHHHHHHHSTTCCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCcHH
Confidence 99999999999999999987543
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.28 E-value=4.8e-11 Score=102.69 Aligned_cols=163 Identities=9% Similarity=-0.041 Sum_probs=95.6
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHcCCC-CC----
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVG-YD----PVSYIAILTACSHG-GLVEKGKKYFDEMQADSVK-PT---- 293 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~-~~---- 293 (423)
.+|+.+...|...|++++|+..+++..+.... .+ ..++..+...|... |++++|...|++..+.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 45566666666666666666666665442100 01 24566677777775 7788887777777664110 01
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC---H-----hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch--
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD---A-----NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY-- 362 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-- 362 (423)
..++..+...|.+.|++++|+..|++. .+.|+ . ..+..+..++...|++++|+..++++.++.|.....
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 345667777777788888888777766 22221 1 145666667777788888888888887777765442
Q ss_pred ---HHHHHHHHH--hcCChhHHHHHHHHHH
Q 038550 363 ---YILLSNMYA--EAGKWDEASKVRELMK 387 (423)
Q Consensus 363 ---~~~l~~~~~--~~g~~~~A~~~~~~m~ 387 (423)
+..++.++. ..+++++|+..|+++.
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 333444443 3456677776665543
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=8.7e-11 Score=112.82 Aligned_cols=163 Identities=9% Similarity=-0.070 Sum_probs=143.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHH
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (423)
+..+|+.|...+.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|+..|++.++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46789999999999999999999999998864 2246789999999999999999999999999885 456789999999
Q ss_pred HHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhh
Q 038550 102 MYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 177 (423)
+|...|++++|++.| +..+.+..+|+.+..+|...|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999 4556678899999999999999999999999999864 44567899999999999999999
Q ss_pred hHHHHHHHHh
Q 038550 178 KEIHGVTIRK 187 (423)
Q Consensus 178 ~~~~~~~~~~ 187 (423)
.+.++++.+.
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998887653
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.27 E-value=1.1e-09 Score=92.52 Aligned_cols=179 Identities=11% Similarity=0.008 Sum_probs=97.5
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----CChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-----KDSASWNTLILGYGMLGEVDTAINLFEAMR 251 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (423)
+...+++....+ .++...+..+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666655544 23333334566666666777777776665521 234455566666666777777777777666
Q ss_pred HcCCCC-----CHHHHHHHHHH--HhccC--cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-C
Q 038550 252 EDGVGY-----DPVSYIAILTA--CSHGG--LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-P 321 (423)
Q Consensus 252 ~~~~~p-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~ 321 (423)
+. .| +..+...+..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+ .
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 34 23444444444 22223 666667777766543 233222233333666667777776666543 1
Q ss_pred C----------CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 322 V----------EP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 322 ~----------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
. .| |+.+...++......|+ +|.++++++.+..|+++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 1 13 44445344444444454 5666666666666666533
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=2e-11 Score=104.35 Aligned_cols=153 Identities=10% Similarity=0.013 Sum_probs=78.0
Q ss_pred hcCCChhhHHHHHHHHHhc-------CCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhc------c-CcchHHHHHH
Q 038550 134 SQTSDCSESLSLFSEMRLL-------GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH------L-HTHLFVANSI 199 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l 199 (423)
...|++++|+..+++..+. ..+....++..+...+...|++++|...++++.+.. . +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3466777777777766542 112234566677777777788888887777766541 1 1223444555
Q ss_pred HHHHHhcCCHHHHHHHhccCCC-------C----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHc------CCCC-CHHH
Q 038550 200 LDFYTRSGRIDLANKIFDCLPV-------K----DSASWNTLILGYGMLGEVDTAINLFEAMRED------GVGY-DPVS 261 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~ 261 (423)
..+|...|++++|...|++... + ...++..+...+...|++++|...+++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 5555555665555555544321 0 1233444444455555555555555544432 0011 1233
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
+..+..++...|++++|..+++++.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444455555555444444
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.25 E-value=1.2e-10 Score=100.27 Aligned_cols=245 Identities=11% Similarity=-0.012 Sum_probs=151.1
Q ss_pred ccHHHHHHHHHHcCCCCchHHHHHHHHHHHhc--C-ChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHh
Q 038550 75 RPGKEIHARIIRKGLNFDLFLTNALTDMYAKC--G-CLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL 151 (423)
Q Consensus 75 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g-~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 151 (423)
.+|.+++.+..+.- ++....+ . +.+. + ++++|...| ......|...|++++|...|++...
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-~----~~~~~~~~~~~~A~~~~----------~~a~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-K----LFSGSDSYKFEEAADLC----------VQAATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-H----HHSCCSHHHHHHHHHHH----------HHHHHHHHHTTCTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-h----hcCCCCCccHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666552 2221112 1 1232 2 477776665 3346778888888888888887755
Q ss_pred c----CCCCc-hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhh
Q 038550 152 L----GMKHD-VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226 (423)
Q Consensus 152 ~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 226 (423)
. |-+++ ..+|..+..++...|++++|...+++..+. +...|+...+ ..+
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~~-----------a~~ 119 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FTHRGQFRRG-----------ANF 119 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHH-----------HHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HHHcCCHHHH-----------HHH
Confidence 3 21111 346777777777777777777777666542 1222333222 234
Q ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh------
Q 038550 227 WNTLILGYGML-GEVDTAINLFEAMREDGVG-YD----PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE------ 294 (423)
Q Consensus 227 ~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 294 (423)
++.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|...|++..+.......
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 66677777775 8888888888877653110 01 346777888888899999999999888876322211
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHh------HHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCcc
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDAN------IWGALLGACR--IYGNVELGAWAAEHLFMLKPQHCG 361 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~ 361 (423)
..|..+..++...|++++|...|++. .+.|+.. .+..++.++. ..+++++|+..|+++..++|....
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 14666777888889999999998887 4455322 2344555553 456688888888777777765433
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.25 E-value=3e-10 Score=84.95 Aligned_cols=128 Identities=15% Similarity=0.203 Sum_probs=84.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CC-CCCHhHHHHHHHHHHhc
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PV-EPDANIWGALLGACRIY 339 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~ 339 (423)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++ .. ..+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4444555555566666666666555542 234445555555566666666666666555 11 22455666677777788
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
|++++|...++++.+..|.++..+..++..+...|++++|...++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 888888888888888888777788888888888888888888888876543
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=1.7e-10 Score=98.43 Aligned_cols=145 Identities=18% Similarity=0.128 Sum_probs=62.2
Q ss_pred HhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----------CChhhHHHHHHHHhccCCHHHH
Q 038550 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-----------KDSASWNTLILGYGMLGEVDTA 243 (423)
Q Consensus 175 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a 243 (423)
++|.++++.+.....+....++..+...|...|++++|...+++... ....++..+...|...|++++|
T Consensus 25 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 104 (283)
T 3edt_B 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104 (283)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence 34444444433322222334444445555555555555544443320 0123344444455555555555
Q ss_pred HHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc------CCCC-ChhhHHHHHHHHHhcCC
Q 038550 244 INLFEAMRED------GVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQAD------SVKP-TEMHYACMVDLLGRAGL 309 (423)
Q Consensus 244 ~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~ 309 (423)
...+++..+. .-.| ...++..+...+...|++++|..+++++.+. +-.| ...++..+...|...|+
T Consensus 105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 184 (283)
T 3edt_B 105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 5555544332 0011 1234444444455555555555555544433 0011 13344444455555555
Q ss_pred hHHHHHHHhh
Q 038550 310 MEDAVKLIKN 319 (423)
Q Consensus 310 ~~~a~~~~~~ 319 (423)
+++|...+++
T Consensus 185 ~~~A~~~~~~ 194 (283)
T 3edt_B 185 YQDAETLYKE 194 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.21 E-value=2.7e-11 Score=92.88 Aligned_cols=141 Identities=11% Similarity=-0.001 Sum_probs=96.6
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 232 LGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
..+...|++++|+..++..... .| +...+..+...|.+.|++++|...|++..+.. +-+..+|..+..+|...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3445566777777777766543 22 23355566777777788888888887777753 34566777777777778888
Q ss_pred HHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHH-HHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038550 311 EDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWA-AEHLFMLKPQHCGYYILLSNMYAEAGK 375 (423)
Q Consensus 311 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 375 (423)
++|+..|++. .+.| +...+..+...|.+.|++++|... ++++.+++|.++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888777776 4455 466777777777788877665544 577888888888887777777766664
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=1.8e-09 Score=88.98 Aligned_cols=181 Identities=11% Similarity=-0.007 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhccCCC--CC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCH-HHHHHHH
Q 038550 195 VANSILDFYTRSGRIDLANKIFDCLPV--KD----SASWNTLILGYGMLGEVDTAINLFEAMREDGVG-YDP-VSYIAIL 266 (423)
Q Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~-~~~~~ll 266 (423)
.+..+...+.+.|++++|...|+++.. |+ ...+..+..++.+.|++++|+..|+++.+.... +.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 344456667777777777777776652 22 245666677777777777777777777764322 111 1344444
Q ss_pred HHHhc------------------cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhH
Q 038550 267 TACSH------------------GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328 (423)
Q Consensus 267 ~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 328 (423)
.++.. .|++++|...|+++.+.. +-+...+...... +...... ...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----~~~~~~~-----------~~~ 149 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----VFLKDRL-----------AKY 149 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----HHHHHHH-----------HHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----HHHHHHH-----------HHH
Confidence 44432 456666666666666541 1112222111110 0000000 001
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHC---GYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 329 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
...+...+...|++++|+..++++.+..|.++ .++..++.+|.+.|++++|++.++.+...+.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 13456678899999999999999999999876 5688899999999999999999999887654
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.19 E-value=5.7e-10 Score=94.26 Aligned_cols=164 Identities=15% Similarity=0.040 Sum_probs=95.4
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCC--C-C---hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHH
Q 038550 198 SILDFYTRSGRIDLANKIFDCLPV--K-D---SASWNTLILGYGMLGEVDTAINLFEAMREDGV-GYD-PVSYIAILTAC 269 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~~~~~ll~~~ 269 (423)
.+...+.+.|++++|...|+.+.. | + ...+..+..+|.+.|++++|...|++..+... .|. ...+..+..++
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~ 99 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCY 99 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Confidence 344444455555555555544431 1 2 34455555666666666666666666665421 111 33455555556
Q ss_pred hc--------cCcHHHHHHHHHHHHHcCCCCChhhH-----------------HHHHHHHHhcCChHHHHHHHhhC-CCC
Q 038550 270 SH--------GGLVEKGKKYFDEMQADSVKPTEMHY-----------------ACMVDLLGRAGLMEDAVKLIKNL-PVE 323 (423)
Q Consensus 270 ~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~~~~~~~-~~~ 323 (423)
.. .|++++|...|+++.+.. +.+.... ..+...|.+.|++++|+..|+++ ...
T Consensus 100 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 100 YKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY 178 (261)
T ss_dssp HHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 55 667777777777666642 1122222 34566777788888888877776 223
Q ss_pred CC----HhHHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCcch
Q 038550 324 PD----ANIWGALLGACRIY----------GNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 324 ~~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
|+ ...+..+..+|... |++++|+..++++.+..|+++.+
T Consensus 179 p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 179 PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 32 34566666666655 77788888888888888877543
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=7.4e-10 Score=93.57 Aligned_cols=169 Identities=11% Similarity=-0.029 Sum_probs=137.0
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-C-CChh
Q 038550 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD---PVSYIAILTACSHGGLVEKGKKYFDEMQADSV-K-PTEM 295 (423)
Q Consensus 221 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~ 295 (423)
+.+...+..+...+.+.|++++|...|+++.+.... + ...+..+..++...|++++|...|+++.+... . ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 346677778888899999999999999999886422 3 57888899999999999999999999998731 1 2245
Q ss_pred hHHHHHHHHHh--------cCChHHHHHHHhhC-CCCCC-HhHH-----------------HHHHHHHHhcCChhHHHHH
Q 038550 296 HYACMVDLLGR--------AGLMEDAVKLIKNL-PVEPD-ANIW-----------------GALLGACRIYGNVELGAWA 348 (423)
Q Consensus 296 ~~~~l~~~~~~--------~~~~~~a~~~~~~~-~~~~~-~~~~-----------------~~l~~~~~~~~~~~~a~~~ 348 (423)
.+..+..++.. .|++++|+..|+++ ...|+ .... ..+...|...|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 66777888888 99999999999987 33342 2233 4567889999999999999
Q ss_pred HHHHHhcCCCCc---chHHHHHHHHHhc----------CChhHHHHHHHHHHhcc
Q 038550 349 AEHLFMLKPQHC---GYYILLSNMYAEA----------GKWDEASKVRELMKSRE 390 (423)
Q Consensus 349 ~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~ 390 (423)
++++.+..|.++ .++..++.+|... |++++|+..++++.+..
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 999999998854 4788888888876 89999999999998754
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.18 E-value=5.4e-10 Score=95.79 Aligned_cols=172 Identities=8% Similarity=-0.050 Sum_probs=137.1
Q ss_pred HHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 038550 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293 (423)
Q Consensus 214 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 293 (423)
..+....+.+...+..+...+...|++++|...|++..+... -+...+..+...+...|++++|...++++... .|+
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~ 183 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQD 183 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCS
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcc
Confidence 333333344556677778888899999999999999988642 26778888999999999999999999988775 344
Q ss_pred hhhHHH-HHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--cchHHHHHH
Q 038550 294 EMHYAC-MVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH--CGYYILLSN 368 (423)
Q Consensus 294 ~~~~~~-l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~ 368 (423)
...... ....+...++.++|...+++. ...| +...+..+...+...|++++|+..++++.+.+|.+ ...+..++.
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 433222 233366777888888888876 4455 67889999999999999999999999999999988 788999999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 038550 369 MYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~ 388 (423)
.|...|+.++|...+++...
T Consensus 264 ~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999887654
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.17 E-value=7.7e-11 Score=113.58 Aligned_cols=169 Identities=10% Similarity=-0.072 Sum_probs=139.3
Q ss_pred HhcCCHHHHHHHhccCC-----------CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 038550 204 TRSGRIDLANKIFDCLP-----------VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272 (423)
Q Consensus 204 ~~~~~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 272 (423)
...|++++|.+.+++.. +.+...+..+..++...|++++|...|++..+... -+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 67889999998887665 34667888888899999999999999999887642 2677888888899999
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHH
Q 038550 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAE 350 (423)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 350 (423)
|++++|...|+++.+.. +-+...+..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|+..|+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999998864 4467778888899999999999 8888887 4455 66788889999999999999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCC
Q 038550 351 HLFMLKPQHCGYYILLSNMYAEAGK 375 (423)
Q Consensus 351 ~~~~~~p~~~~~~~~l~~~~~~~g~ 375 (423)
++.+.+|.+..++..++.++...++
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC----
T ss_pred hhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999998999888888876555
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=1.8e-09 Score=80.58 Aligned_cols=131 Identities=16% Similarity=0.238 Sum_probs=105.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (423)
.|..+...+...|++++|..+++++.+... .+...+..+...+...|++++|..+++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 466777788888889999988888877642 366778888888888899999999998888764 445677788888888
Q ss_pred hcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 306 RAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
..|++++|...++++ ...| +...+..+...+...|++++|...++++.+..|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999988877 2233 5777888888899999999999999999888775
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.13 E-value=7.3e-09 Score=87.61 Aligned_cols=175 Identities=9% Similarity=0.014 Sum_probs=128.4
Q ss_pred HHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 212 ANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG-YDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 212 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
|...|++.. .++..++..+..++...|++++|++++.+....+.. -+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 566666554 345556667788888899999999999988766532 2556777888889999999999999999977
Q ss_pred cCCCC-----ChhhHHHHHHHH--HhcC--ChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhc--
Q 038550 288 DSVKP-----TEMHYACMVDLL--GRAG--LMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFML-- 355 (423)
Q Consensus 288 ~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 355 (423)
. .| +..+...|..++ ...| ++.+|..+|+++ ...|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 4 45 345555566553 3334 899999999988 43455344444555888999999999999877765
Q ss_pred --------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 356 --------KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 356 --------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+|.++.+...++......|+ +|.++++++.+..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48888888777766667776 8888888887754
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.11 E-value=1.3e-09 Score=103.14 Aligned_cols=160 Identities=11% Similarity=-0.026 Sum_probs=125.2
Q ss_pred cCCHHHHHHHhccCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 038550 206 SGRIDLANKIFDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282 (423)
Q Consensus 206 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 282 (423)
.|++++|...|++..+ .+...|..+...+...|++++|.+.+++..+... .+...+..+..+|...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999988763 3577899999999999999999999999988642 36788999999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhc---CChhHHHHHHHHHHhcCC
Q 038550 283 DEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIY---GNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p 357 (423)
++..+.. +.+...+..+..+|.+.|++++|.+.|++. ...| +...+..+...+... |++++|...++++.+.+|
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 9999874 456788889999999999999999999987 4445 577888899999999 999999999999999999
Q ss_pred CCcchHHHHH
Q 038550 358 QHCGYYILLS 367 (423)
Q Consensus 358 ~~~~~~~~l~ 367 (423)
.+...+..+.
T Consensus 160 ~~~~~~~~l~ 169 (568)
T 2vsy_A 160 GAVEPFAFLS 169 (568)
T ss_dssp CCSCHHHHTT
T ss_pred cccChHHHhC
Confidence 9888887775
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.10 E-value=7.1e-10 Score=87.51 Aligned_cols=157 Identities=9% Similarity=0.021 Sum_probs=96.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhc
Q 038550 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL-LGRA 307 (423)
Q Consensus 229 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 307 (423)
.+...+...|++++|...+++..+.. +-+...+..+..++...|++++|...++++.... |+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 34444555556666665555544431 1134455555555666666666666665554432 232222211111 1111
Q ss_pred CChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCChhHHHHHH
Q 038550 308 GLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH--CGYYILLSNMYAEAGKWDEASKVR 383 (423)
Q Consensus 308 ~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~ 383 (423)
+...+|...+++. ...| +...+..+...+...|++++|...++++.+..|.. +..+..++.++...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223355566555 3345 57778888888889999999999999999888765 458888888999999999999888
Q ss_pred HHHHh
Q 038550 384 ELMKS 388 (423)
Q Consensus 384 ~~m~~ 388 (423)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=2.4e-10 Score=87.49 Aligned_cols=124 Identities=13% Similarity=0.025 Sum_probs=104.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCCh
Q 038550 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNV 342 (423)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 342 (423)
|...+...|++++|+..++...... +-+...+..+...|.+.|++++|++.|++. .+.| +...|..+...+...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 4456777899999999999887642 234556677899999999999999999988 5566 678999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH-HHHHHhc
Q 038550 343 ELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV-RELMKSR 389 (423)
Q Consensus 343 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 389 (423)
++|+..|+++.+.+|.++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887765 5777664
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.09 E-value=1e-08 Score=83.40 Aligned_cols=161 Identities=9% Similarity=-0.063 Sum_probs=116.9
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHHcCCCCChhhHH
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG----LVEKGKKYFDEMQADSVKPTEMHYA 298 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 298 (423)
++..+..+...|...+++++|..+|++..+.| +...+..+...|.. + ++++|..+|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55556666666666777777777777777654 55666667666666 5 7888888888877654 445666
Q ss_pred HHHHHHHh----cCChHHHHHHHhhC-CCCCC---HhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 299 CMVDLLGR----AGLMEDAVKLIKNL-PVEPD---ANIWGALLGACRI----YGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 299 ~l~~~~~~----~~~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
.|...|.. .+++++|+++|++. ...|+ +..+..|...|.. .+++++|...|+++.+. |.++..+..|
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~L 168 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWA 168 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence 67677766 67888888888877 33342 6777777777777 77888888888888887 5566678888
Q ss_pred HHHHHhc-C-----ChhHHHHHHHHHHhccc
Q 038550 367 SNMYAEA-G-----KWDEASKVRELMKSREA 391 (423)
Q Consensus 367 ~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 391 (423)
+.+|... | ++++|..++++..+.|.
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8887654 2 78889988888887764
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.05 E-value=2.6e-07 Score=85.18 Aligned_cols=355 Identities=9% Similarity=-0.066 Sum_probs=206.7
Q ss_pred ccC-CcchhHHhhcccCC--cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCC-CCccHHH
Q 038550 4 KSS-RPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGH-FLRPGKE 79 (423)
Q Consensus 4 ~~g-~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~ 79 (423)
+.| +++.|..+|+++.. |. |+++.+..+|++.... .|+...|...+....+.+ ..+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 37777777777654 43 7899999999998874 478888888887766655 3467778
Q ss_pred HHHHHHHc-CC-CCchHHHHHHHHHHH----hcCChHHHHHHhc-h-hcCCc---chHHHHHHHHh-------------c
Q 038550 80 IHARIIRK-GL-NFDLFLTNALTDMYA----KCGCLNLAQNVFN-I-SFRDE---VSYNILIVGYS-------------Q 135 (423)
Q Consensus 80 ~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~~~a~~~~~-~-~~~~~---~~~~~l~~~~~-------------~ 135 (423)
+|+..+.. |. +++...|...+..+. ..++++.+.++|+ . ..|.. ..|......-. .
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 88887764 43 345677777766543 2456778888882 1 12211 11221111100 0
Q ss_pred CCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH-------hhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCC
Q 038550 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL-------AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208 (423)
Q Consensus 136 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 208 (423)
.+.+..|..+++.+...--..+...|...+..-... +..+.+..+|++++...+ .....|-..+..+.+.|+
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCC
Confidence 112333444444443210001222343333332211 113456678888877543 446677777888888999
Q ss_pred HHHHHHHhccCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHhccCc
Q 038550 209 IDLANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINLFEAMREDG---------VGY---DPVSYIAILTACSHGGL 274 (423)
Q Consensus 209 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p---~~~~~~~ll~~~~~~~~ 274 (423)
.+.|..+|++.. +.+...|.. |+...+.++. ++.+.+.- ..+ ....|...+..+.+.++
T Consensus 229 ~~~ar~i~erAi~~P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 229 KEKAKKVVERGIEMSDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 999999987543 222222222 2221111221 22222210 001 12456666666667788
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHH
Q 038550 275 VEKGKKYFDEMQADSVKPTEMHYACMVDLLGR-AGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEH 351 (423)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 351 (423)
.+.|..+|+++ ... ..+...|......-.. .++++.|..+|+.. ..-| ++..+...+......|+.+.|..+|++
T Consensus 302 ~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 302 LELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKR 379 (493)
T ss_dssp HHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999 321 2334444332222222 33699999999876 2123 355677788888889999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 352 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
+ +.....|...+..-...|+.+.+..+++++.+
T Consensus 380 ~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 380 L----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp S----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7 34567788888777888999999998888875
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.04 E-value=4.4e-09 Score=85.41 Aligned_cols=181 Identities=10% Similarity=-0.011 Sum_probs=121.9
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCC
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (423)
.+......+...|++++|...|+...+..+.. ...+.. ...... ..........+..++.+.|+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~-----~~~~~~----------~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-TEMYYW-----TNVDKN----------SEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-HHHHHH-----HHSCTT----------SHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHH-----hhhcch----------hhhhHHHHHHHHHHHHHCCC
Confidence 33444555667778888888887777654321 111110 000000 00012233447888899999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hHHHHHHH
Q 038550 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL--MEDAVKLI 317 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~ 317 (423)
+++|+..|++..+... -+...+..+..++...|++++|...|+++.+.. +.+...+..+..+|...|+ .+.+...+
T Consensus 70 ~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 70 YDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999988643 267889999999999999999999999999874 4567788888888766553 45566667
Q ss_pred hhCCCCCCH--hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 318 KNLPVEPDA--NIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 318 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
+... .|++ ..+..+..++...|++++|+..|+++.+..|.+
T Consensus 148 ~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 148 KKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp C----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6663 3433 344445566777899999999999999999974
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.03 E-value=5.4e-09 Score=98.91 Aligned_cols=147 Identities=9% Similarity=-0.061 Sum_probs=96.9
Q ss_pred HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHH
Q 038550 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLF 247 (423)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~ 247 (423)
.|++++|...++++.+... .+...+..+...+.+.|++++|...|++.. +.+...+..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4677888888887776543 245666777788888888888888887654 335677788888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CChHHHHHHHhhC
Q 038550 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA---GLMEDAVKLIKNL 320 (423)
Q Consensus 248 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~ 320 (423)
++..+... .+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++.
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 88777632 256777888888888888888888888887763 34566777778888888 8888888888776
No 106
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.02 E-value=7.4e-08 Score=82.72 Aligned_cols=161 Identities=6% Similarity=-0.061 Sum_probs=121.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-CC----hhhHH
Q 038550 229 TLILGYGMLGEVDTAINLFEAMREDGV-GYDPV----SYIAILTACSHGGLVEKGKKYFDEMQADSVK-PT----EMHYA 298 (423)
Q Consensus 229 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 298 (423)
..+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...++++...... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887432 22221 2334666677888999999999999885222 22 23688
Q ss_pred HHHHHHHhcCChHHHHHHHhhC--------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------cchH
Q 038550 299 CMVDLLGRAGLMEDAVKLIKNL--------PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH------CGYY 363 (423)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 363 (423)
.+...|...|++++|+..|+++ +..+ ...++..+...|...|++++|...++++.+..+.. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8889999999999999988776 1112 23377888899999999999999999998865322 5678
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHhc
Q 038550 364 ILLSNMYAEAGK-WDEASKVRELMKSR 389 (423)
Q Consensus 364 ~~l~~~~~~~g~-~~~A~~~~~~m~~~ 389 (423)
..++.+|.+.|+ +++|.+.+++....
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 899999999995 69999999988764
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=1.2e-08 Score=98.40 Aligned_cols=169 Identities=11% Similarity=0.023 Sum_probs=118.6
Q ss_pred HhHhhHHhhhHHHHHHH--------HhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhcc
Q 038550 169 ANLAAIKQGKEIHGVTI--------RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGML 237 (423)
Q Consensus 169 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 237 (423)
...|++++|.+.++++. +.. +.+...+..+..++.+.|++++|...|++.. +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 55677777777777776 322 2344556667777777788888877777665 34667777788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038550 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317 (423)
Q Consensus 238 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (423)
|++++|...|++..+.... +...+..+..++.+.|++++ ...|+++.+.. +.+...|..+..++.+.|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888887775322 55677777788888888888 88888887764 445667778888888888888888888
Q ss_pred hhC-CCCCC-HhHHHHHHHHHHhcCC
Q 038550 318 KNL-PVEPD-ANIWGALLGACRIYGN 341 (423)
Q Consensus 318 ~~~-~~~~~-~~~~~~l~~~~~~~~~ 341 (423)
+++ ...|+ ...+..+..++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 887 56665 4566666666655554
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.01 E-value=2.2e-07 Score=85.60 Aligned_cols=337 Identities=10% Similarity=-0.004 Sum_probs=212.7
Q ss_pred CCcchhHHhhcccCC--cChhhHHHHHHHHHhCCC-hHHHHHHHhhchhC-CCC-CCchhHHHHHHHhhc----CCCCcc
Q 038550 6 SRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRL-ELKALQLVREMPIH-NEF-PNSVTLTNVLPACAR----GHFLRP 76 (423)
Q Consensus 6 g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~-~~~-p~~~~~~~l~~~~~~----~~~~~~ 76 (423)
|+++.+..+|++... |++..|...+....+.+. .+....+|+..... |.. .+...|...+..+.. .++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 678999999999776 899999999988777663 35566777776653 432 355677777776543 356788
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHH-------------hcCChHHHHHHh----chhc-CCcchHHHHHHHHhcCC-
Q 038550 77 GKEIHARIIRKGLNFDLFLTNALTDMYA-------------KCGCLNLAQNVF----NISF-RDEVSYNILIVGYSQTS- 137 (423)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~a~~~~----~~~~-~~~~~~~~l~~~~~~~~- 137 (423)
+..+|+..+......-...|......-. ..+.+..|..++ ...+ .+...|...+.--...+
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 9999999987422111223332221110 011222333333 1111 13335655554432221
Q ss_pred -C-----hhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHH
Q 038550 138 -D-----CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211 (423)
Q Consensus 138 -~-----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 211 (423)
- .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+++..... +.+...+. .|....+.++
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~ 260 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEA 260 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTH
T ss_pred cCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhH
Confidence 1 345678899988764 556777877888888899999999999999988 33333322 2222111111
Q ss_pred -HHHHhccCC------------CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCcHHH
Q 038550 212 -ANKIFDCLP------------VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH-GGLVEK 277 (423)
Q Consensus 212 -A~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~ 277 (423)
...+.+... ......|...+....+.++.+.|..+|++. .. ...+...|......-.. .++.+.
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ 338 (493)
T 2uy1_A 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRAT 338 (493)
T ss_dssp HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHH
Confidence 111222110 001245666677777788899999999999 32 12344455432222222 336999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
|..+|+...+.- +-+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 339 ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 339 PYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998862 3334556667787788999999999999983 3678899998888889999999999988875
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.00 E-value=5.5e-07 Score=76.87 Aligned_cols=225 Identities=5% Similarity=-0.026 Sum_probs=138.5
Q ss_pred hhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHh--hHHhhhHHHHHHHHhccCcchHHHHHHHHHH----Hhc---CCH
Q 038550 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACANLA--AIKQGKEIHGVTIRKHLHTHLFVANSILDFY----TRS---GRI 209 (423)
Q Consensus 139 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 209 (423)
.++|++.+++++... +-+...++.--..+...+ +++++...++.+....+.. ..+|+.-..++ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-YQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-HHHHHHHHHHHHHHHHhccccCCH
Confidence 346666666666642 223334455555555555 6666666666666554432 22222222222 233 566
Q ss_pred HHHHHHhccCC---CCChhhHHHHHHHHhccCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc------HHHH
Q 038550 210 DLANKIFDCLP---VKDSASWNTLILGYGMLGEVD--TAINLFEAMREDGVGYDPVSYIAILTACSHGGL------VEKG 278 (423)
Q Consensus 210 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~~~a 278 (423)
++++.+++.+. +.+..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+...+. ++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 67776666654 346666766666666677777 888888888876544 66777766666666665 7778
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH-HHHHHhhC-CC----CCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED-AVKLIKNL-PV----EPDANIWGALLGACRIYGNVELGAWAAEHL 352 (423)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 352 (423)
.+.++.++... +-|...|+.+...+.+.|+... +..+..++ .. ..++..+..+...+.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88887777764 4567777777777777776443 44455554 21 235666777777777777777777777777
Q ss_pred Hh-cCCCCcchHHHHH
Q 038550 353 FM-LKPQHCGYYILLS 367 (423)
Q Consensus 353 ~~-~~p~~~~~~~~l~ 367 (423)
.+ .+|.....|...+
T Consensus 285 ~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 285 KSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHTTCGGGHHHHHHHH
T ss_pred HhccChHHHHHHHHHH
Confidence 75 5777666655443
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.00 E-value=1.6e-08 Score=87.62 Aligned_cols=217 Identities=9% Similarity=-0.017 Sum_probs=144.0
Q ss_pred CCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh-HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHH
Q 038550 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN-LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANK 214 (423)
Q Consensus 136 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (423)
.|++++|.+++++..+.. +.. +.+ .++++.|...|.. ....|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~---------------a~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAK---------------AAVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHH---------------HHHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHH---------------HHHHHHHcCCHHHHHH
Confidence 466777888777766531 110 011 2445555554443 3445666777777777
Q ss_pred HhccCCC-----CC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHhccCcHHHHHH
Q 038550 215 IFDCLPV-----KD----SASWNTLILGYGMLGEVDTAINLFEAMREDG--V-GYD--PVSYIAILTACSHGGLVEKGKK 280 (423)
Q Consensus 215 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~-~p~--~~~~~~ll~~~~~~~~~~~a~~ 280 (423)
.|.+... .+ ..+|+.+...|...|++++|+..+++..+.- . .+. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 6664431 11 3467788888888999999999988865431 1 111 3567788888888 99999999
Q ss_pred HHHHHHHcCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHhhC-CC---CCC----HhHHHHHHHHHHhcCChhHHHH
Q 038550 281 YFDEMQADSVKP-----TEMHYACMVDLLGRAGLMEDAVKLIKNL-PV---EPD----ANIWGALLGACRIYGNVELGAW 347 (423)
Q Consensus 281 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~---~~~----~~~~~~l~~~~~~~~~~~~a~~ 347 (423)
.|++..+..... ...++..+...|.+.|++++|+..|++. .+ .++ ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999887651111 1456788889999999999999999876 11 111 2256666677788899999999
Q ss_pred HHHHHHhcCCCCcch-----HHHHHHHHHhcCChhHHHH
Q 038550 348 AAEHLFMLKPQHCGY-----YILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 348 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 381 (423)
.++++. ..|..... ...++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 88865543 33444444 5677766655
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.00 E-value=1.5e-08 Score=82.18 Aligned_cols=132 Identities=8% Similarity=0.018 Sum_probs=61.9
Q ss_pred HHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCC
Q 038550 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208 (423)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 208 (423)
+..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++++..+. +...+..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 4444445555555555555554432 223444445555555555555555555555544321 23333444444433322
Q ss_pred --HHHHHHHhccCCCCChh--hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038550 209 --IDLANKIFDCLPVKDSA--SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264 (423)
Q Consensus 209 --~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 264 (423)
.+.+...+.....++.. .+.....++...|++++|...|++..+. .|+......
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 33344455555444432 2223344455566777777777776653 455544433
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.99 E-value=2.5e-09 Score=81.47 Aligned_cols=97 Identities=12% Similarity=-0.030 Sum_probs=77.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
...+..+...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..|+++.+.+|.++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 445666677777888888888888777 4445 57778888888888888888888888888888888888888888888
Q ss_pred hcCChhHHHHHHHHHHhcc
Q 038550 372 EAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~ 390 (423)
..|++++|+..|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888887754
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.99 E-value=6.7e-09 Score=76.66 Aligned_cols=107 Identities=8% Similarity=-0.042 Sum_probs=69.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHh
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRI 338 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~ 338 (423)
.+......|.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..|++. .+.| +...|..+..++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45555666667777777777777666653 345566666666666667766666666665 3333 45566666677777
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 339 YGNVELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
.|++++|+..|+++.+++|.++.++..+..
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 777777777777777777777666665544
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.97 E-value=9.4e-08 Score=81.62 Aligned_cols=212 Identities=14% Similarity=0.123 Sum_probs=167.6
Q ss_pred HHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcC--CHHHHHHHhccCC---CCChhhHHHHHHHH----hcc---CCHH
Q 038550 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG--RIDLANKIFDCLP---VKDSASWNTLILGY----GML---GEVD 241 (423)
Q Consensus 174 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~ 241 (423)
.++|...++.++..++. ....++.--.++...| +++++++.++.+. +.+..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 35788888888887653 3556666777778888 9999999999876 34566676655555 444 7899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC------hHHH
Q 038550 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE--KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL------MEDA 313 (423)
Q Consensus 242 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a 313 (423)
+++.+++++.+...+ +..+|+.-...+.+.|.++ ++.+.++++.+.. +-|...|+.-...+.+.+. ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 999999999987544 7888888888888888888 9999999999875 4577778777667777776 8889
Q ss_pred HHHHhhC-CCCC-CHhHHHHHHHHHHhcCChh-HHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 314 VKLIKNL-PVEP-DANIWGALLGACRIYGNVE-LGAWAAEHLFMLK---PQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 314 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
++.++++ ...| |...|+.+...+.+.|+.. .+..+.+++.+.+ |.++.++..++.+|.+.|+.++|+++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8888877 4455 7888988888888888744 4566777777765 7888899999999999999999999999987
Q ss_pred h
Q 038550 388 S 388 (423)
Q Consensus 388 ~ 388 (423)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=1.2e-08 Score=80.45 Aligned_cols=154 Identities=11% Similarity=-0.002 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccC
Q 038550 198 SILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA-CSHGG 273 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~ 273 (423)
.+...+.+.|++++|...|++.. +.+...+..+...+...|++++|...+++..... |+...+...... +...+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 34455666666666666666655 2345566666666667777777777776655432 233322221111 11112
Q ss_pred cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC---HhHHHHHHHHHHhcCChhHHHHHH
Q 038550 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD---ANIWGALLGACRIYGNVELGAWAA 349 (423)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 349 (423)
....|...+++..+.. +.+...+..+...+...|++++|...|+++ ...|+ ...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223566677766653 334666777777777777777777777766 44543 446777777777777777777777
Q ss_pred HHHHh
Q 038550 350 EHLFM 354 (423)
Q Consensus 350 ~~~~~ 354 (423)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=8.3e-09 Score=88.34 Aligned_cols=135 Identities=9% Similarity=-0.046 Sum_probs=115.3
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHH-
Q 038550 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALL- 333 (423)
Q Consensus 256 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~- 333 (423)
+.+...+..+...+...|++++|...|+++.+.. +-+...+..+...+.+.|++++|...++++ ...|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3345667778888999999999999999999874 456778889999999999999999999998 4567665443333
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 334 GACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 334 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
..+...++.+.|+..++++.+..|+++..+..++..|...|++++|+..++++.+...
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 3467888899999999999999999999999999999999999999999999988654
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.94 E-value=2.8e-08 Score=80.84 Aligned_cols=130 Identities=11% Similarity=-0.077 Sum_probs=106.1
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLL 304 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (423)
..+..+...+...|++++|...|++.. .|+...+..+..++...|++++|...+++..... +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345666777888999999999988763 5678888899999999999999999999988864 45677888888899
Q ss_pred HhcCChHHHHHHHhhC-CCCC-----------------CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 305 GRAGLMEDAVKLIKNL-PVEP-----------------DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 305 ~~~~~~~~a~~~~~~~-~~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
...|++++|...|++. ...| ....+..+..++...|++++|...++++.+..|.+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999988877 2222 22677788888899999999999999999988876
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.92 E-value=5.5e-08 Score=79.97 Aligned_cols=186 Identities=10% Similarity=-0.047 Sum_probs=131.1
Q ss_pred chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc--hHHHHHHHHHHHhcCCHHHHHHHhccCC--CC-Ch---hhHH
Q 038550 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH--LFVANSILDFYTRSGRIDLANKIFDCLP--VK-DS---ASWN 228 (423)
Q Consensus 157 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~---~~~~ 228 (423)
+...+..+...+.+.|++++|...|+.+.+..+... ...+..+..+|.+.|++++|...|+++. .| +. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566677888999999999999999998754332 3566778899999999999999999875 23 22 2455
Q ss_pred HHHHHHhc------------------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038550 229 TLILGYGM------------------LGEVDTAINLFEAMREDGVGYDP-VSYIAILTACSHGGLVEKGKKYFDEMQADS 289 (423)
Q Consensus 229 ~li~~~~~------------------~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 289 (423)
.+..++.. .|++++|...|+++.+.. |+. ......... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH---
Confidence 55555543 578999999999999863 432 222211110 00111111
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|+..++.+....|.+...
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 11234567788999999999999987 33443 2467788899999999999999999999988887543
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.92 E-value=3e-08 Score=77.00 Aligned_cols=129 Identities=9% Similarity=-0.002 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHH
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACR 337 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~ 337 (423)
..+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...+++. ...| +...+..+...+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345666667777788888888888777753 345677777778888888888888888776 3334 5677888888999
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCChhHHHHHHHHHHhc
Q 038550 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNM--YAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 338 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~ 389 (423)
..|++++|...++++.+..|.+...+..+..+ +...|++++|+..+++..+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999999999988887554444 78889999999999887653
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=5.1e-08 Score=79.30 Aligned_cols=174 Identities=10% Similarity=0.024 Sum_probs=133.2
Q ss_pred chhHHhhcccCC-cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCC----CCccHHHHHHH
Q 038550 9 AEASYLFHNIAE-KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGH----FLRPGKEIHAR 83 (423)
Q Consensus 9 ~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~ 83 (423)
.+|++.|+...+ .++.++..+...|...+++++|++.|++..+.| +...+..+...+.. + ++++|...|++
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 356777776554 678889999999999999999999999998876 66778888888877 6 88999999999
Q ss_pred HHHcCCCCchHHHHHHHHHHHh----cCChHHHHHHh-chhc-CC----cchHHHHHHHHhc----CCChhhHHHHHHHH
Q 038550 84 IIRKGLNFDLFLTNALTDMYAK----CGCLNLAQNVF-NISF-RD----EVSYNILIVGYSQ----TSDCSESLSLFSEM 149 (423)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~-~~~~-~~----~~~~~~l~~~~~~----~~~~~~a~~~~~~m 149 (423)
..+.| ++..+..|..+|.. .+++++|..+| .... .+ ..++..|...|.. .+++++|+..|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 98765 56677778888876 78899999999 2222 22 5778888888888 78899999999988
Q ss_pred HhcCCCCchhhHHHHHHHHHhH-h-----hHHhhhHHHHHHHHhccCc
Q 038550 150 RLLGMKHDVVSFMGAISACANL-A-----AIKQGKEIHGVTIRKHLHT 191 (423)
Q Consensus 150 ~~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~~~~ 191 (423)
.+. ..+...+..+...|... | +.++|...++...+.|...
T Consensus 156 ~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 156 SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 875 23444666666666543 3 7888888888888877533
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.91 E-value=3e-09 Score=81.07 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|+..++++.+.+|.++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334444555556666666666666555 2233 45555666666666666666666666666666666666666666666
Q ss_pred hcCChhHHHHHHHHHHhc
Q 038550 372 EAGKWDEASKVRELMKSR 389 (423)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~ 389 (423)
..|++++|+..|++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666666554
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.90 E-value=5.5e-09 Score=89.14 Aligned_cols=191 Identities=6% Similarity=-0.086 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038550 195 VANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271 (423)
Q Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 271 (423)
.+..+...+.+.|++++|...|++.. +.+...|..+..+|.+.|++++|...+++..+... -+...+..+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 34445555666666666666665443 23566677777777788888888888888776532 256677778888888
Q ss_pred cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHH
Q 038550 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351 (423)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 351 (423)
.|++++|...|++..+... -+...+...+....+......... ........+......+. .+ ..|+.++|++.+++
T Consensus 85 ~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~-~l-~~~~~~~A~~~~~~ 160 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLT-RL-IAAERERELEECQR 160 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHH-HH-HHHHHHHHHTTTSG
T ss_pred cCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHH-HH-HHHHHHHHHHHHHh
Confidence 8888888888888776521 111111111111111111111111 12222233433433332 22 36889999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHhcc
Q 038550 352 LFMLKPQHCGYYILLSNMYAEA-GKWDEASKVRELMKSRE 390 (423)
Q Consensus 352 ~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~ 390 (423)
+.+.+|.+......+...+.+. +++++|.++|.+..+..
T Consensus 161 al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 161 NHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp GGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred hhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999998877777776666665 77889999999887643
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=1e-07 Score=77.47 Aligned_cols=129 Identities=9% Similarity=-0.049 Sum_probs=110.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 038550 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275 (423)
Q Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 275 (423)
+..+...+...|++++|...|++...++...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34567778899999999999999988888999999999999999999999999998864 33678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC----------------hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCH
Q 038550 276 EKGKKYFDEMQADSVKPT----------------EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDA 326 (423)
Q Consensus 276 ~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~ 326 (423)
++|...|++..+.. +.+ ...+..+..+|...|++++|...|++. ...|+.
T Consensus 88 ~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999998863 222 267888899999999999999999987 566653
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.89 E-value=1.5e-08 Score=74.85 Aligned_cols=97 Identities=10% Similarity=0.067 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
...+......|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++.+|.++.+|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 345677888999999999999999987 4455 68899999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhcc
Q 038550 372 EAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~ 390 (423)
..|++++|++.|++..+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 9999999999999998753
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.86 E-value=7.1e-08 Score=70.63 Aligned_cols=115 Identities=13% Similarity=0.166 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCC-CCHhHHHHHHHHH
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVE-PDANIWGALLGAC 336 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~ 336 (423)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++ ... .+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 3456666666777777777777777776653 344566666777777777777777777665 222 3566777777888
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
...|++++|...++++.+..|.++..+..++..+...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888887777777665543
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.85 E-value=3e-08 Score=86.91 Aligned_cols=128 Identities=9% Similarity=-0.071 Sum_probs=96.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC--------------ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKP--------------TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP- 324 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~- 324 (423)
.+..+...+.+.|++++|...|++..+..... ....|..+..+|.+.|++++|+..+++. .+.|
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 44444455555555555555555555432111 0367778888888888888888888877 3444
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA-SKVRELMKS 388 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 388 (423)
+...+..+..+|...|++++|+..|+++.+..|.+..++..++.++.+.|++++| ..++++|..
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888999999999999999999999999999999999999999999999998 456666643
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.84 E-value=8.9e-08 Score=82.22 Aligned_cols=163 Identities=5% Similarity=-0.059 Sum_probs=116.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHcCC---CCC--hh
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP-----VSYIAILTACSHGGLVEKGKKYFDEMQADSV---KPT--EM 295 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 295 (423)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566777888888888888877765322111 2233455566778899999999888875421 111 34
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhC----CCCCC-----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------Cc
Q 038550 296 HYACMVDLLGRAGLMEDAVKLIKNL----PVEPD-----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ------HC 360 (423)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 360 (423)
+++.+...|...|++++|...|++. ...|+ ..++..+...|...|++++|+..++++.+..+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888889999999998888765 11222 257888888999999999999999998775421 14
Q ss_pred chHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 038550 361 GYYILLSNMYAEAGKWDEA-SKVRELMKS 388 (423)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 388 (423)
.++..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5678889999999999999 777777654
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.84 E-value=6.4e-08 Score=71.53 Aligned_cols=117 Identities=9% Similarity=0.003 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHH
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGAC 336 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 336 (423)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++. ...| +...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3456666666777777777777777777653 345666777777777778888887777766 2233 466777888888
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
...|++++|...++++.+..|.++..+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8899999999999999999998888888888888887765
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.83 E-value=2e-08 Score=79.19 Aligned_cols=128 Identities=5% Similarity=0.003 Sum_probs=82.1
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCh--
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL-LGRAGLM-- 310 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 310 (423)
+...|++++|...+++..+.. +.+...+..+..+|...|++++|...|+++.... +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345677777777777766653 2356677777777777777777777777777653 3355566666666 5667776
Q ss_pred HHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchH
Q 038550 311 EDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY 363 (423)
Q Consensus 311 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 363 (423)
++|...++++ ...| +...+..+...+...|++++|...++++.+..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 7777777665 3334 455666666777777777777777777777777665443
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.82 E-value=5.9e-08 Score=72.08 Aligned_cols=115 Identities=10% Similarity=-0.056 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHH
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGAC 336 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 336 (423)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++. ...| +...+..+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3445555555555666666666665555432 224455555555555566666666655554 2222 455666666777
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
...|++++|...++++.+..|.+...+..++.++...|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 77777777777777777777777777777766666554
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=1.4e-08 Score=77.36 Aligned_cols=107 Identities=7% Similarity=-0.061 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHH
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGA 335 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~ 335 (423)
+...+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|+..|++. .+.| ++..+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34466667778888899999999998888764 456777888888888999999999988887 4445 56778888889
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcchHHH
Q 038550 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 336 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 365 (423)
+...|++++|+..|+++.+..|.++.....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 999999999999999999999887766443
No 132
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.76 E-value=6e-08 Score=73.25 Aligned_cols=91 Identities=15% Similarity=0.049 Sum_probs=47.8
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 299 CMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
.+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+.+|.++..+..++.+|...|++
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 3444444555555555555544 2222 3444555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHhc
Q 038550 377 DEASKVRELMKSR 389 (423)
Q Consensus 377 ~~A~~~~~~m~~~ 389 (423)
++|+..+++..+.
T Consensus 103 ~~A~~~~~~al~~ 115 (142)
T 2xcb_A 103 DGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555443
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=1.2e-06 Score=75.09 Aligned_cols=157 Identities=9% Similarity=-0.065 Sum_probs=118.1
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCC---Ch------hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 038550 199 ILDFYTRSGRIDLANKIFDCLPVK---DS------ASWNTLILGYGMLGEVDTAINLFEAMREDGVG-YD----PVSYIA 264 (423)
Q Consensus 199 l~~~~~~~~~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 264 (423)
.+..+...|++++|..+++..... +. ..+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788889999999998875421 11 13345667777888999999999999874322 22 236889
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHc--CC---CC-ChhhHHHHHHHHHhcCChHHHHHHHhhC-------CCCCC-HhHHH
Q 038550 265 ILTACSHGGLVEKGKKYFDEMQAD--SV---KP-TEMHYACMVDLLGRAGLMEDAVKLIKNL-------PVEPD-ANIWG 330 (423)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~--~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~-~~~~~ 330 (423)
+..+|...|++++|...++++.+. .. .+ ...++..+...|.+.|++++|...+++. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999998853 11 11 2346788889999999999999998876 22222 56888
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHhc
Q 038550 331 ALLGACRIYGN-VELGAWAAEHLFML 355 (423)
Q Consensus 331 ~l~~~~~~~~~-~~~a~~~~~~~~~~ 355 (423)
.+..++...|+ +++|...++++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88999999995 69999999998763
No 134
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=6.4e-08 Score=83.74 Aligned_cols=196 Identities=11% Similarity=0.007 Sum_probs=148.0
Q ss_pred hHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038550 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249 (423)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 249 (423)
..|++++|.+++++..+.... . .+...++++.|...|.. ....|...|++++|...+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 468889999999888764331 1 01115788888777654 46678889999999999998
Q ss_pred HHHcC----CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC--C-CC--ChhhHHHHHHHHHhcCChHHHHHHHhh
Q 038550 250 MREDG----VGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADS--V-KP--TEMHYACMVDLLGRAGLMEDAVKLIKN 319 (423)
Q Consensus 250 m~~~~----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (423)
..+.. -.+ -..+|+.+..+|...|++++|...|++..+.- . .+ ...++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 76531 111 13478888899999999999999999887641 1 12 14567788888888 999999999987
Q ss_pred C-CCCC-------CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCChhHHHHHHHH
Q 038550 320 L-PVEP-------DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC------GYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 320 ~-~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
. .+.| ...++..+...+...|++++|+..++++.+..|.+. ..+..++.++...|++++|+..+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 1111 145788889999999999999999999998765443 2566677788888999999999999
Q ss_pred HH
Q 038550 386 MK 387 (423)
Q Consensus 386 m~ 387 (423)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.75 E-value=1.2e-07 Score=72.21 Aligned_cols=101 Identities=7% Similarity=-0.130 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHH
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGAC 336 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 336 (423)
...+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|+..|++. .+.| ++..|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4467778888999999999999999999874 557888899999999999999999999988 4555 567888899999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCc
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
...|++++|+..|+++.+..|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999998764
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=8.4e-08 Score=75.49 Aligned_cols=122 Identities=7% Similarity=0.039 Sum_probs=98.4
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHH-HHhcCCh--h
Q 038550 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGA-CRIYGNV--E 343 (423)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~-~~~~~~~--~ 343 (423)
+...|++++|...+++..... +.+...+..+...|...|++++|...|++. ...| +...+..+... +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 456788888999998888764 456788888899999999999999999887 3334 66777778888 7788998 9
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 344 LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 344 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
+|...++++.+..|.++.++..++.+|...|++++|...+++..+...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999887653
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.74 E-value=6.5e-08 Score=71.31 Aligned_cols=93 Identities=12% Similarity=0.031 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++.+.+|.++..+..++.++...|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 344444455555555555555544 2222 34555555556666666666666666666666666666666666666666
Q ss_pred ChhHHHHHHHHHHhc
Q 038550 375 KWDEASKVRELMKSR 389 (423)
Q Consensus 375 ~~~~A~~~~~~m~~~ 389 (423)
++++|+..+++..+.
T Consensus 87 ~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 87 EYASALETLDAARTK 101 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666655543
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.73 E-value=9.3e-09 Score=82.77 Aligned_cols=96 Identities=8% Similarity=-0.055 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
..+..+..+|...|++++|+..+++. ...| +...+..+..++...|++++|...++++.+..|.++.++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56667777888888888888888776 3334 667888888999999999999999999999999999999999999988
Q ss_pred cCChhHHH-HHHHHHHhcc
Q 038550 373 AGKWDEAS-KVRELMKSRE 390 (423)
Q Consensus 373 ~g~~~~A~-~~~~~m~~~~ 390 (423)
.++.+++. ..+..|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88888877 5666666554
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.73 E-value=1.1e-07 Score=68.07 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=77.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CcchHHHHHH
Q 038550 293 TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ--HCGYYILLSN 368 (423)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 368 (423)
+...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3455666677777777777777777766 2233 5667777888888888888888888888888888 8888888888
Q ss_pred HHHhc-CChhHHHHHHHHHHhccc
Q 038550 369 MYAEA-GKWDEASKVRELMKSREA 391 (423)
Q Consensus 369 ~~~~~-g~~~~A~~~~~~m~~~~~ 391 (423)
++... |++++|++.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 88888 999999998888877554
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.72 E-value=2.3e-07 Score=74.58 Aligned_cols=153 Identities=9% Similarity=0.003 Sum_probs=85.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCh
Q 038550 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD----SVK-PTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~ 310 (423)
..|++++|.+.++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 455666666644333321 1123445555666666666666666666665542 111 1234455556666666666
Q ss_pred HHHHHHHhhC-------CCCC--CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCc----chHHHHHHHHHhcCC
Q 038550 311 EDAVKLIKNL-------PVEP--DANIWGALLGACRIYGNVELGAWAAEHLFMLKP--QHC----GYYILLSNMYAEAGK 375 (423)
Q Consensus 311 ~~a~~~~~~~-------~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~ 375 (423)
++|...+++. +..| ....+..+...+...|++++|...++++.+..+ .++ .++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666554 1111 123455666677777777777777777765421 111 234567777778888
Q ss_pred hhHHHHHHHHHHhc
Q 038550 376 WDEASKVRELMKSR 389 (423)
Q Consensus 376 ~~~A~~~~~~m~~~ 389 (423)
+++|.+.+++..+.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777776653
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.72 E-value=6.1e-07 Score=74.89 Aligned_cols=150 Identities=12% Similarity=0.070 Sum_probs=78.1
Q ss_pred cCCChhhHHHHHHHHHhcCCCCchhhHHHH-------HHHHHhHhhHHhhhHHHHHHHHhccC-----cc----------
Q 038550 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGA-------ISACANLAAIKQGKEIHGVTIRKHLH-----TH---------- 192 (423)
Q Consensus 135 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~-----~~---------- 192 (423)
..++...|.+.|.+..... +-....|..+ ...+.+.++..++...+.......+. .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5788888888888888754 3455677766 56677777777776666655441110 00
Q ss_pred -----hHHHHHHHHHHHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHH
Q 038550 193 -----LFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD--PVSYI 263 (423)
Q Consensus 193 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~ 263 (423)
....-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 11222344556666666666666666552 211133333334455555555555554332210 000 12344
Q ss_pred HHHHHHhccCcHHHHHHHHHHHH
Q 038550 264 AILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 264 ~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
.+..++...|++++|+..|++..
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh
Confidence 44444555555555555555444
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=1.6e-05 Score=68.64 Aligned_cols=173 Identities=9% Similarity=0.016 Sum_probs=110.9
Q ss_pred hcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHh-hHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc-C-CHH
Q 038550 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA-AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS-G-RID 210 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 210 (423)
.+.+..++|++++++++... +-+...++.--..+...+ .++++...++.+....++ +..+|+.-..++.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 34444567777777777643 233444555555555566 477777777777765543 344444444444444 5 677
Q ss_pred HHHHHhccCCC---CChhhHHHHHHHHhccCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-----
Q 038550 211 LANKIFDCLPV---KDSASWNTLILGYGMLGEVD--------TAINLFEAMREDGVGYDPVSYIAILTACSHGGL----- 274 (423)
Q Consensus 211 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----- 274 (423)
+++++++.+.. .|..+|+...-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 77777777663 35556665555554445555 888888888887544 77788887777777765
Q ss_pred --HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 275 --VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 275 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
++++.+.+++++... +-|...|+.+-..+.+.|+.
T Consensus 222 ~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 678888888888764 55677777766666666653
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.69 E-value=7e-08 Score=70.57 Aligned_cols=95 Identities=14% Similarity=0.024 Sum_probs=81.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038550 296 HYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEA 373 (423)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 373 (423)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+.+|.++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4555667788899999999999887 4455 6778888888999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcc
Q 038550 374 GKWDEASKVRELMKSRE 390 (423)
Q Consensus 374 g~~~~A~~~~~~m~~~~ 390 (423)
|++++|+..+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987654
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.9e-07 Score=68.72 Aligned_cols=110 Identities=8% Similarity=-0.112 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHH
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACR 337 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~ 337 (423)
..+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++. .+.| +...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445566666777777777777777777653 345667777777777777777777777766 3344 4667777788888
Q ss_pred hcCChhHHHHHHHHHHhcC------CCCcchHHHHHHHH
Q 038550 338 IYGNVELGAWAAEHLFMLK------PQHCGYYILLSNMY 370 (423)
Q Consensus 338 ~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 370 (423)
..|++++|+..++++.+.. |.+..+...+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888888888888888887 77666666665443
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.68 E-value=1.1e-07 Score=71.76 Aligned_cols=106 Identities=10% Similarity=-0.035 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHH
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACR 337 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~ 337 (423)
..+..+...+...|++++|...|+++.... +.+...|..+..+|...|++++|+..|++. ...| ++..+..+..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 345555666777788888888888877764 446667777777888888888888888776 3344 5566777788888
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 338 IYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 338 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
..|++++|...++++.+..|.++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 88899999999999888888777665543
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.68 E-value=6.5e-07 Score=69.35 Aligned_cols=109 Identities=11% Similarity=-0.032 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHH
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGA 335 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~ 335 (423)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++. .+.| +...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34566777777888888888888888888764 446777888888888888888888888877 4445 57788888899
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 336 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
+...|++++|+..|+++.+..|.+...+....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999988665544
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.67 E-value=7.3e-08 Score=71.18 Aligned_cols=92 Identities=8% Similarity=-0.069 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc-------hHHHHH
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG-------YYILLS 367 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 367 (423)
+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..+++++++.|.+.. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 334444555555555555555544 2233 3445555555555666666666666666555544332 344455
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 038550 368 NMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.++...|++++|++.|++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 555666666666666665544
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.67 E-value=2.9e-07 Score=68.22 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=90.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
+.+...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|+..++++.+..|.++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345667888889999999999999999987 5555 77889999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcc
Q 038550 369 MYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
++...|++++|+..+++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999988754
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.67 E-value=1.3e-07 Score=73.34 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=89.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038550 293 TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370 (423)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 370 (423)
+...+..+...+...|++++|+..|++. ...| +...|..+..+|...|++++|+..++++.+.+|.++.++..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567788889999999999999999987 4455 7788999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhcc
Q 038550 371 AEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~~ 390 (423)
...|++++|+..+++..+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 99999999999999998754
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=5.7e-07 Score=64.91 Aligned_cols=107 Identities=10% Similarity=-0.003 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHh
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRI 338 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~ 338 (423)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++. ...| +...+..+...+..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444445555555555555555555432 223444444555555555555555555444 2222 34455555555566
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 339 YGNVELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
.|++++|...++++.+..|.++..+..+..
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666666666666666666655555544433
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=1.6e-07 Score=75.57 Aligned_cols=151 Identities=15% Similarity=0.080 Sum_probs=90.7
Q ss_pred hcCCHHHHHH---HhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHH
Q 038550 205 RSGRIDLANK---IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED----GVGY-DPVSYIAILTACSHGGLVE 276 (423)
Q Consensus 205 ~~~~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~ 276 (423)
..|++++|.+ .+..-+.....++..+...+...|++++|...+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 443322234455666666677777777777777665541 1111 2345666667777778888
Q ss_pred HHHHHHHHHHHc--CCC--C--ChhhHHHHHHHHHhcCChHHHHHHHhhC----CCCCC----HhHHHHHHHHHHhcCCh
Q 038550 277 KGKKYFDEMQAD--SVK--P--TEMHYACMVDLLGRAGLMEDAVKLIKNL----PVEPD----ANIWGALLGACRIYGNV 342 (423)
Q Consensus 277 ~a~~~~~~~~~~--~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~ 342 (423)
+|...+++..+. ... + ....+..+...+...|++++|...+++. ....+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 887777776654 111 1 1334666677777778888887777655 11111 23456677778888888
Q ss_pred hHHHHHHHHHHhc
Q 038550 343 ELGAWAAEHLFML 355 (423)
Q Consensus 343 ~~a~~~~~~~~~~ 355 (423)
++|...++++.+.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887664
No 152
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=1.1e-06 Score=67.99 Aligned_cols=124 Identities=8% Similarity=0.000 Sum_probs=71.9
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcC
Q 038550 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQT 136 (423)
Q Consensus 61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~ 136 (423)
+..+...+...|+++.|...++..++.. +.+..++..+..++...|++++|...| ...+.+...|..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 3334444444555555555555554443 233445555555555566666665555 22334455667777777778
Q ss_pred CChhhHHHHHHHHHhcCCCCchhhH--HHHHHHHHhHhhHHhhhHHHHHHHH
Q 038550 137 SDCSESLSLFSEMRLLGMKHDVVSF--MGAISACANLAAIKQGKEIHGVTIR 186 (423)
Q Consensus 137 ~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~ 186 (423)
|++++|...+++..+.. +.+...+ ...+..+...|++++|...+.....
T Consensus 95 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 95 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888877653 3334444 2333346677888888887776543
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=8.2e-07 Score=76.16 Aligned_cols=159 Identities=8% Similarity=-0.072 Sum_probs=114.1
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCC---CCCh------hhHHHHHHHHhccCCHHHHHHHHHHHHHcCC---CCC--HHHH
Q 038550 197 NSILDFYTRSGRIDLANKIFDCLP---VKDS------ASWNTLILGYGMLGEVDTAINLFEAMREDGV---GYD--PVSY 262 (423)
Q Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~--~~~~ 262 (423)
...+..+...|++++|.+.+.... +... ..+..+...+...|++++|...+++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 345667778888888888776432 1111 2244456667788899999999998875321 112 4478
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHc-CCCCC-----hhhHHHHHHHHHhcCChHHHHHHHhhC-CC------CC-CHhH
Q 038550 263 IAILTACSHGGLVEKGKKYFDEMQAD-SVKPT-----EMHYACMVDLLGRAGLMEDAVKLIKNL-PV------EP-DANI 328 (423)
Q Consensus 263 ~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~------~~-~~~~ 328 (423)
+.+...|...|++++|...++++.+. ...|+ ..++..+...|...|++++|...+++. .+ .. -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 88888999999999999999988733 11122 257888889999999999999998876 11 11 2567
Q ss_pred HHHHHHHHHhcCChhHH-HHHHHHHHhc
Q 038550 329 WGALLGACRIYGNVELG-AWAAEHLFML 355 (423)
Q Consensus 329 ~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 355 (423)
+..+...|...|++++| ...++++...
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 88888999999999999 7778887653
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.64 E-value=3.9e-07 Score=68.07 Aligned_cols=98 Identities=13% Similarity=-0.039 Sum_probs=57.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038550 293 TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370 (423)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 370 (423)
+...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3444555555555555555555555544 2222 3455555666666666666666666666666666666666666666
Q ss_pred HhcCChhHHHHHHHHHHhcc
Q 038550 371 AEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~~ 390 (423)
...|++++|+..+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 66666666666666665543
No 155
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.62 E-value=7.9e-08 Score=84.22 Aligned_cols=159 Identities=8% Similarity=-0.059 Sum_probs=102.8
Q ss_pred CCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHH
Q 038550 6 SRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82 (423)
Q Consensus 6 g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 82 (423)
+++++|+..|+...+ .+...|..+...+.+.|++++|+..|++..+.. |+...+ ..+.+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~-- 191 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKA-- 191 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHH--
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHH--
Confidence 445566666655443 245677788888888888888888888877643 332110 00000000
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCch
Q 038550 83 RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 158 (423)
. +....+|..+..+|.+.|++++|+..| +..+.+..+|..+..+|...|++++|+..|++..+.. +.+.
T Consensus 192 --~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~ 264 (336)
T 1p5q_A 192 --Q----ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNK 264 (336)
T ss_dssp --H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCH
T ss_pred --H----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 0 112356666777777777777777777 3345566777888888888888888888888888754 4456
Q ss_pred hhHHHHHHHHHhHhhHHhh-hHHHHHHHH
Q 038550 159 VSFMGAISACANLAAIKQG-KEIHGVTIR 186 (423)
Q Consensus 159 ~~~~~ll~~~~~~~~~~~a-~~~~~~~~~ 186 (423)
..+..+..++...|+.+++ ...+..|..
T Consensus 265 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888888877 445555544
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.62 E-value=1.7e-07 Score=79.78 Aligned_cols=90 Identities=8% Similarity=-0.075 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH
Q 038550 96 TNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171 (423)
Q Consensus 96 ~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 171 (423)
+..+...+...|++++|...| ...+.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 333444444444444444444 1222344444455555555555555555555554432 22334444555555555
Q ss_pred hhHHhhhHHHHHHHH
Q 038550 172 AAIKQGKEIHGVTIR 186 (423)
Q Consensus 172 ~~~~~a~~~~~~~~~ 186 (423)
|++++|...++...+
T Consensus 86 g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 86 ESYDEAIANLQRAYS 100 (281)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555444
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=5.9e-07 Score=67.97 Aligned_cols=108 Identities=8% Similarity=-0.071 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHH
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT----EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGA 331 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~ 331 (423)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++. ...| +...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3445555555566666666666666665553 233 344555555555555555555555544 2222 3444555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
+..++...|++++|...++++.+..|.+..++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 555555555555555555555555555544444443
No 158
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.61 E-value=1.5e-06 Score=72.62 Aligned_cols=133 Identities=14% Similarity=-0.023 Sum_probs=97.9
Q ss_pred HHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC-C----hhhHHHHHHHHhc
Q 038550 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-D----SASWNTLILGYGM 236 (423)
Q Consensus 162 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~----~~~~~~li~~~~~ 236 (423)
......+...|++++|.+.|+.+...+. +......+...+.+.+++++|+..|+..... + ...+..+..++..
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 3455667778888888888877766543 2224455667888999999999999866543 2 2467778889999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHH
Q 038550 237 LGEVDTAINLFEAMREDGVGYD--PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298 (423)
Q Consensus 237 ~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 298 (423)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++.... |+...+.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~ 245 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAA 245 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHH
Confidence 9999999999999885433254 3466677778899999999999999999864 5433333
No 159
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.60 E-value=3.5e-05 Score=66.18 Aligned_cols=167 Identities=9% Similarity=0.002 Sum_probs=92.1
Q ss_pred hcCCChh-hHHHHHHHHHhcCCCCch-hhHHHHHHHHHhHhh----------HHhhhHHHHHHHHhccCcchHHHHHHHH
Q 038550 134 SQTSDCS-ESLSLFSEMRLLGMKHDV-VSFMGAISACANLAA----------IKQGKEIHGVTIRKHLHTHLFVANSILD 201 (423)
Q Consensus 134 ~~~~~~~-~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 201 (423)
.+.|.++ +|+++++.+... .|+. ..++.--..+...+. ++++..+++.+....++ +..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3445544 788888888774 3443 334444333333333 56666677766665442 3444444444
Q ss_pred HHHhcC--CHHHHHHHhccCC---CCChhhHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---
Q 038550 202 FYTRSG--RIDLANKIFDCLP---VKDSASWNTLILGYGMLGE-VDTAINLFEAMREDGVGYDPVSYIAILTACSHG--- 272 (423)
Q Consensus 202 ~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--- 272 (423)
++...+ .+++++.+++.+. +.|..+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 455555 3666666666654 3455666665555556666 46777777777665433 555555554444333
Q ss_pred -----------CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038550 273 -----------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305 (423)
Q Consensus 273 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (423)
+.++++.+.+....... |-|...|+.+-..+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34566666666666553 345555554443333
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=5.6e-07 Score=64.97 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456777888899999999999999987 3344 77888899999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhcc
Q 038550 372 EAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~ 390 (423)
..|++++|...+++..+.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999987754
No 161
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=6e-07 Score=65.53 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
...+..+...+...|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+..|.++..+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567788889999999999999999987 3333 67788999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhcc
Q 038550 372 EAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~ 390 (423)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999998754
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.56 E-value=5.2e-07 Score=67.38 Aligned_cols=100 Identities=6% Similarity=-0.084 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHH
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGA 335 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~ 335 (423)
+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++. ...| +...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45666677777777777777777777776653 345666777777777777777777777766 3334 56677777778
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC
Q 038550 336 CRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 336 ~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
+...|++++|+..++++.+..|.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888877766
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.54 E-value=6e-07 Score=82.18 Aligned_cols=129 Identities=11% Similarity=0.006 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC---------------hhhHHHHHHHHHhcCChHHHHHHHhhC-CCC
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT---------------EMHYACMVDLLGRAGLMEDAVKLIKNL-PVE 323 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~ 323 (423)
..+..+...+.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|+..++++ .+.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345555666666666666666666666542 111 467888888999999999999998887 444
Q ss_pred C-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH-HHHHHHHhc
Q 038550 324 P-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS-KVRELMKSR 389 (423)
Q Consensus 324 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 389 (423)
| +...|..+..+|...|++++|+..|+++.++.|.+..++..+..++.+.|+++++. ..+++|..+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 67788889999999999999999999999999999999999999999999998876 456666544
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=2e-06 Score=64.99 Aligned_cols=97 Identities=10% Similarity=-0.046 Sum_probs=60.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 293 TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
+...+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|+..++++.+..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4455555666666666666666666655 44454 455555666666666666666666666666666666666666
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 038550 368 NMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+|...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666666666666543
No 165
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.53 E-value=2.8e-07 Score=84.76 Aligned_cols=119 Identities=9% Similarity=0.007 Sum_probs=93.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChh
Q 038550 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVE 343 (423)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 343 (423)
...+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|++.+++. .+.| +...+..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344667788888888888888763 445777888888888888888888888877 4455 5678888889999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCChhHHHHHHHH
Q 038550 344 LGAWAAEHLFMLKPQHCGYYILLSNM--YAEAGKWDEASKVREL 385 (423)
Q Consensus 344 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 385 (423)
+|+..++++.+..|.+...+..+..+ +.+.|++++|++.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999998888877 8888999999999883
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.51 E-value=1e-06 Score=62.91 Aligned_cols=100 Identities=15% Similarity=0.092 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC---CHhHHHHHHHH
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP---DANIWGALLGA 335 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~---~~~~~~~l~~~ 335 (423)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++. ...| +...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344555556666666666666666666543 334555666666666777777777766665 2233 35667777777
Q ss_pred HHhc-CChhHHHHHHHHHHhcCCCCc
Q 038550 336 CRIY-GNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 336 ~~~~-~~~~~a~~~~~~~~~~~p~~~ 360 (423)
+... |++++|.+.++++....|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 888888888888877777654
No 167
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.51 E-value=5.5e-07 Score=67.88 Aligned_cols=107 Identities=10% Similarity=-0.057 Sum_probs=74.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-CHhHHHHHHHHHHhc
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP-DANIWGALLGACRIY 339 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~ 339 (423)
.+......+.+.|++++|...|++.++.. |+...- +.....| +...|..+..++...
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~--------------------~a~~~~~~~a~a~~n~g~al~~L 70 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPE--------------------EAFDHAGFDAFCHAGLAEALAGL 70 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTT--------------------SCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcch--------------------hhhhhccchHHHHHHHHHHHHHC
Confidence 34455555666677777777777666642 221000 0000000 233788888888888
Q ss_pred CChhHHHHHHHHHHhc-------CCCCcchH----HHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 340 GNVELGAWAAEHLFML-------KPQHCGYY----ILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+.
T Consensus 71 gr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 71 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8898888888888888 99998889 99999999999999999999988764
No 168
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=1.2e-06 Score=64.56 Aligned_cols=98 Identities=14% Similarity=0.060 Sum_probs=87.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038550 293 TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370 (423)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 370 (423)
+...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4566778888999999999999999987 3344 6788889999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhcc
Q 038550 371 AEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~~ 390 (423)
...|++++|...+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999988754
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.50 E-value=7.5e-07 Score=65.70 Aligned_cols=97 Identities=9% Similarity=-0.087 Sum_probs=50.8
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC----HhHHHHHHHHH
Q 038550 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTE---MHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD----ANIWGALLGAC 336 (423)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~ 336 (423)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|+++ ...|+ ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445556666666666666665542 1112 24444555555556666665555554 22222 33445555555
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
...|++++|...++++.+..|.++..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 55556666666665555555555443
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.49 E-value=3.6e-07 Score=73.31 Aligned_cols=164 Identities=10% Similarity=-0.042 Sum_probs=88.4
Q ss_pred ccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHH
Q 038550 4 KSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 80 (423)
..|++++|.+.++...+ .....+..+...+...|++++|++.|++..... |+...+... ...-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~------------~~~~ 81 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ------------ILLD 81 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH------------HHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh------------hHHH
Confidence 34566666666655433 244566677777778888888888887776642 211100000 0000
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC
Q 038550 81 HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH 156 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 156 (423)
... .....++..+..+|...|++++|+..+ ...+.+..++..+..+|...|++++|+..|++..+.. +-
T Consensus 82 ~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 154 (198)
T 2fbn_A 82 KKK------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PN 154 (198)
T ss_dssp HHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TT
T ss_pred HHH------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CC
Confidence 000 001245566666677777777777766 3334566677777778888888888888888877753 33
Q ss_pred chhhHHHHHHHHHhHhhHHhhh-HHHHHHHHhc
Q 038550 157 DVVSFMGAISACANLAAIKQGK-EIHGVTIRKH 188 (423)
Q Consensus 157 ~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~ 188 (423)
+...+..+..++...++.+++. ..+..+...+
T Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 155 NLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5566677777777777777776 5555554443
No 171
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.48 E-value=9.8e-05 Score=63.79 Aligned_cols=178 Identities=10% Similarity=-0.042 Sum_probs=112.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhchhCCCCCC-chhHHHHHHHhhcCC-CCccHHHHHHHHHHcCCCCchHHHHHHHHH
Q 038550 25 SWNAMVANFAQNRLELKALQLVREMPIHNEFPN-SVTLTNVLPACARGH-FLRPGKEIHARIIRKGLNFDLFLTNALTDM 102 (423)
Q Consensus 25 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (423)
+++.+.....+.+..++|+++++.++..+ |+ ..+|+.--..+...| .+++++.+++.++... +-+..+|+.-..+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 34444444555666678999999988764 43 445676666666667 5888899998888775 4566677777666
Q ss_pred HHhc-C-ChHHHHHHh----chhcCCcchHHHHHHHHhcCCChh--------hHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 038550 103 YAKC-G-CLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCS--------ESLSLFSEMRLLGMKHDVVSFMGAISAC 168 (423)
Q Consensus 103 ~~~~-g-~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 168 (423)
+.+. + +++++++++ +..++|..+|+.-...+.+.+.++ ++++.++++.+.. +-|...|+.....+
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 6665 6 777777777 344556666666555555555555 7777777777764 44556666666665
Q ss_pred HhHhh-------HHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcC
Q 038550 169 ANLAA-------IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207 (423)
Q Consensus 169 ~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 207 (423)
.+.+. ++++.+.++.++...+ .+...++-+-..+.+.|
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence 55543 4566666666665443 23444444444444443
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.47 E-value=8e-07 Score=65.50 Aligned_cols=106 Identities=7% Similarity=-0.070 Sum_probs=55.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CC----CCC----HhHHHHH
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PV----EPD----ANIWGAL 332 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~----~~~----~~~~~~l 332 (423)
+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++. .. .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444445555555555555544432 223444444445555555555555555443 11 111 4455666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 038550 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNM 369 (423)
Q Consensus 333 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 369 (423)
...+...|++++|...++++.+..| ++.....+..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 6667777777777777777777666 44444444433
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=8.1e-07 Score=64.82 Aligned_cols=98 Identities=10% Similarity=0.004 Sum_probs=62.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhc
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIY 339 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 339 (423)
+..+...+.+.|++++|...+++..+.. +.+...|..+..++...|++++|+..|++. .+.| +...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444555666777777777777777653 345666666777777777777777777766 3444 455667777777777
Q ss_pred CChhHHHHHHHHHHhcCCCCc
Q 038550 340 GNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~ 360 (423)
|++++|+..++++.+..|.+.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 777778777777777777643
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.44 E-value=3.2e-05 Score=66.44 Aligned_cols=213 Identities=9% Similarity=0.035 Sum_probs=149.1
Q ss_pred HhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCC----------HHHHHHHhccCC---CCChhhHHHHHHHHhccC--C
Q 038550 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR----------IDLANKIFDCLP---VKDSASWNTLILGYGMLG--E 239 (423)
Q Consensus 175 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~ 239 (423)
++|...++.++..++.. ..+++.--.++...+. +++++.+++.+. +.+..+|+.-...+...| .
T Consensus 47 ~eaL~~t~~~L~~nP~~-ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGANPDF-ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHCchh-HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 46788888887765433 3333333333322222 567777777665 457788888777777777 4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-----------
Q 038550 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL-VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA----------- 307 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 307 (423)
+++++.+++.+.+...+ |..+|+.-...+...|. ++++.+.++.+++.. +-|...|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccc
Confidence 89999999999987644 77888888777788887 589999999999875 45777777766666554
Q ss_pred ---CChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhc-----------CChhHHHHHHHHHHhcCCCCcchHHHHHHH--
Q 038550 308 ---GLMEDAVKLIKNL-PVEP-DANIWGALLGACRIY-----------GNVELGAWAAEHLFMLKPQHCGYYILLSNM-- 369 (423)
Q Consensus 308 ---~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-- 369 (423)
+.++++++.+.+. ...| |...|+-+-..+... +.++++++.++++.+..|++.-.+..++..
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~ 283 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR 283 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHH
Confidence 4477888888776 4455 677776555444444 457899999999999999884443333322
Q ss_pred -HHhcCChhHHHHHHHHHHhcc
Q 038550 370 -YAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 370 -~~~~g~~~~A~~~~~~m~~~~ 390 (423)
....|..+++...+.++.+.+
T Consensus 284 ~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 284 ALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHCTTTTHHHHHHHHHHHHHHC
T ss_pred hhcccccHHHHHHHHHHHHHhC
Confidence 224677888999999987643
No 175
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.44 E-value=1.4e-06 Score=64.22 Aligned_cols=106 Identities=8% Similarity=-0.064 Sum_probs=52.6
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (423)
++..+...+.+.|++++|+..|++..+... -+...|..+..+|...|++++|+..+++.++... .+...+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~----- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR-ETRADYKLI----- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHH-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc-ccchhhHHH-----
Confidence 344455555555555555555555554321 1344455555555555555555555555444310 000001101
Q ss_pred hcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
..+|..+..++...|++++|+..|+++++..|+
T Consensus 83 --------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 --------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred --------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 124445556666677777777777777666553
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.44 E-value=1.4e-06 Score=77.12 Aligned_cols=90 Identities=7% Similarity=-0.062 Sum_probs=77.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038550 293 TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370 (423)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 370 (423)
+...|..+..+|.+.|++++|+..+++. .+.| +...+..+..+|...|++++|+..++++.+..|.+..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888888999999999999999887 5566 5778888999999999999999999999999999999999999988
Q ss_pred HhcCChhHHHHH
Q 038550 371 AEAGKWDEASKV 382 (423)
Q Consensus 371 ~~~g~~~~A~~~ 382 (423)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 888888777643
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.43 E-value=2.7e-07 Score=66.92 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=45.7
Q ss_pred CChHHHHHHHhhC-CC---CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 038550 308 GLMEDAVKLIKNL-PV---EP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382 (423)
Q Consensus 308 ~~~~~a~~~~~~~-~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 382 (423)
|++++|+..|++. .. .| +...+..+...+...|++++|+..++++.+..|.++.++..++.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555555555544 22 13 2344555555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhc
Q 038550 383 RELMKSR 389 (423)
Q Consensus 383 ~~~m~~~ 389 (423)
+++..+.
T Consensus 84 ~~~al~~ 90 (117)
T 3k9i_A 84 LLKIIAE 90 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6665543
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.42 E-value=5.1e-07 Score=79.09 Aligned_cols=148 Identities=8% Similarity=-0.078 Sum_probs=80.1
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038550 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (423)
...+..+...+.+.|++++|...|++.... .|+.. .+...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345666677777788888888888887664 23332 1233444444332221 1367778888
Q ss_pred HHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHH-HHhcCChhHHH
Q 038550 304 LGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNM-YAEAGKWDEAS 380 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~ 380 (423)
|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|+..|+++.+..|.++.++..+... ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998877 4445 677888889999999999999999999999999988888888766 34556777888
Q ss_pred HHHHHHHhcc
Q 038550 381 KVRELMKSRE 390 (423)
Q Consensus 381 ~~~~~m~~~~ 390 (423)
.+|++|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888887654
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.42 E-value=4.8e-06 Score=61.24 Aligned_cols=92 Identities=20% Similarity=0.129 Sum_probs=59.2
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CCCCC-H---hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---cchHHHHHHHH
Q 038550 299 CMVDLLGRAGLMEDAVKLIKNL-PVEPD-A---NIWGALLGACRIYGNVELGAWAAEHLFMLKPQH---CGYYILLSNMY 370 (423)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 370 (423)
.+...+...|++++|...|+++ ...|+ . ..+..+..++...|++++|...++++.+..|.+ +.++..++.++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455566677777777776665 22232 2 355556666677777777777777777777766 55566677777
Q ss_pred HhcCChhHHHHHHHHHHhcc
Q 038550 371 AEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~~ 390 (423)
...|++++|...++++.+..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 77777777777777766543
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.41 E-value=1.2e-06 Score=64.50 Aligned_cols=97 Identities=10% Similarity=0.069 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-------cchHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-------CGYYI 364 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 364 (423)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 356777888999999999999999987 3334 67888899999999999999999999999988766 77888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 365 LLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 365 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.++.++...|++++|...+++..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999998754
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=3e-06 Score=76.98 Aligned_cols=162 Identities=10% Similarity=-0.106 Sum_probs=89.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCCC-Chhh
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDG-VGYDP----VSYIAILTACSHGGLVEKGKKYFDEMQAD----SVKP-TEMH 296 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 296 (423)
+..+...|...|++++|.+.+..+...- ..++. ...+.+...+...|+.+.|..+++..... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4445556666666666666665544321 01111 12223333344556667776666665542 1111 1345
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCC----cc
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-------PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQH----CG 361 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 361 (423)
+..+...|...|++++|..+++++ ..++ ...++..++..|...|++++|...++++.... +.. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 566667777777777777766654 1122 23456666677777777777777777766543 221 12
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 362 YYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345556666677777777777666654
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.40 E-value=1e-06 Score=68.01 Aligned_cols=102 Identities=9% Similarity=-0.073 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHc--------C---------CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQAD--------S---------VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL- 320 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~- 320 (423)
...+......+.+.|++++|...|++.... . -+.+...|..+..+|.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456677777888888888888888887764 0 0112234455555555555555555555554
Q ss_pred CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 321 PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 321 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
.+.| +...|..+..++...|++++|...++++.++.|.++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 2233 344555555555555555555555555555555554
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.40 E-value=1e-06 Score=68.08 Aligned_cols=99 Identities=11% Similarity=-0.000 Sum_probs=54.5
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHc--------CC--------CC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMRED--------GV--------GY-DPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~--------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
..+......+.+.|++++|+..|.+.... .. .| +...|..+..+|.+.|++++|...+++.++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555555566666666666666665543 00 01 123455555566666666666666666665
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC
Q 038550 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP 324 (423)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~ 324 (423)
.. +.+...|..+..+|...|++++|...|++. .+.|
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 43 334555556666666666666666666554 3344
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.39 E-value=9.7e-07 Score=67.80 Aligned_cols=94 Identities=16% Similarity=0.068 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhC-------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC------CCcc
Q 038550 296 HYACMVDLLGRAGLMEDAVKLIKNL-------PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKP------QHCG 361 (423)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~ 361 (423)
++..+...+...|++++|...+++. +..+ ....+..+...+...|++++|...++++.+..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444455555555555555555443 1001 133455566677777777777777777765421 1234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 362 YYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
++..++..+...|++++|.+.+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5677888888889999998888887653
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.37 E-value=3.8e-07 Score=66.14 Aligned_cols=92 Identities=14% Similarity=0.056 Sum_probs=60.8
Q ss_pred cCcHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHH
Q 038550 272 GGLVEKGKKYFDEMQADS--VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAW 347 (423)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 347 (423)
.|++++|...|++..+.+ -+.+...+..+..+|...|++++|+..|++. ...| +...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 466667777777766642 1233456666777777777777777777766 3334 46677777778888888888888
Q ss_pred HHHHHHhcCCCCcchH
Q 038550 348 AAEHLFMLKPQHCGYY 363 (423)
Q Consensus 348 ~~~~~~~~~p~~~~~~ 363 (423)
.++++.+..|.++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888877776543
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.34 E-value=7.2e-06 Score=74.97 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=98.7
Q ss_pred HHhccCcHHHHHHHHHHHHHc---CCCC----ChhhHHHHHHHHHhcCChHHHHHHHhhC---------CCCCC-HhHHH
Q 038550 268 ACSHGGLVEKGKKYFDEMQAD---SVKP----TEMHYACMVDLLGRAGLMEDAVKLIKNL---------PVEPD-ANIWG 330 (423)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~---------~~~~~-~~~~~ 330 (423)
.+..+|++++|+.++++..+. -+.| ...+++.|..+|...|++++|+.++++. ...|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887764 1222 2567888999999999999999988775 24454 34788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcch---HHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 331 ALLGACRIYGNVELGAWAAEHLFM-----LKPQHCGY---YILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 331 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.|...|...|++++|+.+++++.+ .+|++|.+ ...+..++...+++++|+.+|.++.+.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999977 46777765 4567788889999999999999998754
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.31 E-value=3.6e-05 Score=72.10 Aligned_cols=167 Identities=8% Similarity=-0.019 Sum_probs=129.3
Q ss_pred HHHHHHhccCC---CCChhhHHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--c
Q 038550 210 DLANKIFDCLP---VKDSASWNTLILGYGMLGE----------VDTAINLFEAMREDGVGYDPVSYIAILTACSHGG--L 274 (423)
Q Consensus 210 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~ 274 (423)
++|.+.++.+. +.+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|+.-..++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 45566665554 2345566665555555555 88999999999887544 7788888888888888 6
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhc------------
Q 038550 275 VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG-LMEDAVKLIKNL-PVEP-DANIWGALLGACRIY------------ 339 (423)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~------------ 339 (423)
++++.+.++++.+.. +-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 125 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred HHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 799999999999875 457778887777777888 889999998888 5556 677787776666553
Q ss_pred --CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 038550 340 --GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDE 378 (423)
Q Consensus 340 --~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 378 (423)
+.++++++.+.++...+|.+..+|.-+...+.+.+++++
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999988888655
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=2.8e-05 Score=70.57 Aligned_cols=57 Identities=7% Similarity=0.008 Sum_probs=33.1
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCch----------------hhHHHHHHHHHhHhhHHhhhHHHHHHHH
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDV----------------VSFMGAISACANLAAIKQGKEIHGVTIR 186 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 186 (423)
...+.+.|++++|++.|.+..+....... ..+..+...|...|++++|.+.+..+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45567778888888888888775422111 1244455555555555555555554443
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.26 E-value=5e-06 Score=72.76 Aligned_cols=152 Identities=8% Similarity=-0.032 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 038550 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272 (423)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 272 (423)
...+..+...+.+.|++++|...|++....+.... .+...|+..++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34566778888999999999999987652211111 1233344444433221 13678888889999
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-HhHHHHHHHH-HHhcCChhHHHHHH
Q 038550 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-ANIWGALLGA-CRIYGNVELGAWAA 349 (423)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~-~~~~~~~~~a~~~~ 349 (423)
|++++|...+++.++.. +.+...|..+..+|...|++++|...|++. .+.|+ ...+..+... ....+..+.+...|
T Consensus 244 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998864 456788889999999999999999999988 56664 4455555444 34456778888899
Q ss_pred HHHHhcCCCCc
Q 038550 350 EHLFMLKPQHC 360 (423)
Q Consensus 350 ~~~~~~~p~~~ 360 (423)
..+....|.++
T Consensus 323 ~~~l~~~p~~~ 333 (338)
T 2if4_A 323 KGIFKGKDEGG 333 (338)
T ss_dssp -----------
T ss_pred HHhhCCCCCCC
Confidence 99988887654
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.23 E-value=2.4e-06 Score=78.21 Aligned_cols=157 Identities=8% Similarity=-0.067 Sum_probs=98.2
Q ss_pred CcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHH
Q 038550 7 RPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHAR 83 (423)
Q Consensus 7 ~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 83 (423)
++++|+..|+...+ .....|..+...+.+.|++++|+..|++..+.. |+...+ . + .....
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~--~---~~~~~ 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S--E---KESKA 311 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C--H---HHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C--h---HHHHH
Confidence 45556666655443 245577888888888999999999988887642 222110 0 0 00000
Q ss_pred HHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh
Q 038550 84 IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
.. +.....|..+..+|.+.|++++|+..| +..+.+..+|..+..+|...|++++|+..|++..+.. +-+..
T Consensus 312 ~~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~ 386 (457)
T 1kt0_A 312 SE----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKA 386 (457)
T ss_dssp HH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----C
T ss_pred HH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH
Confidence 00 112356666777777777777777777 3445567778888888888888888888888887753 33455
Q ss_pred hHHHHHHHHHhHhhHHhhhH-HHHHHH
Q 038550 160 SFMGAISACANLAAIKQGKE-IHGVTI 185 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~-~~~~~~ 185 (423)
.+..+..++.+.++.+++.+ .+..|.
T Consensus 387 a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778887777653 444443
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.18 E-value=1e-05 Score=61.86 Aligned_cols=131 Identities=15% Similarity=0.048 Sum_probs=81.4
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CCC----hh
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVG-YD----PVSYIAILTACSHGGLVEKGKKYFDEMQADSV-KPT----EM 295 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 295 (423)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555666666666666666665442100 11 13566666677777777777777777665410 011 34
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhC-------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038550 296 HYACMVDLLGRAGLMEDAVKLIKNL-------PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLK 356 (423)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 356 (423)
.+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5566667777778888777777655 1111 23456677788888899999998888877653
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.18 E-value=7.2e-06 Score=59.01 Aligned_cols=64 Identities=9% Similarity=-0.048 Sum_probs=37.1
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
+...+..+...+...|++++|+..++++.+..|.+...+..++.+|...|++++|+..+++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555556666666666666655555555555555566666666666665555544
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.16 E-value=1e-06 Score=62.95 Aligned_cols=92 Identities=12% Similarity=-0.003 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------cchHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH------CGYYIL 365 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~ 365 (423)
...+..+...+...|++++|.+.|++. ...| +...+..+..++...|++++|+..++++.+..|.+ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 445566667777777777777777766 3333 56677777888888888888888888888888887 666667
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 038550 366 LSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~ 385 (423)
++.++...|++++|+..+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 77777777777666555443
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.14 E-value=1.3e-05 Score=56.04 Aligned_cols=66 Identities=20% Similarity=0.102 Sum_probs=58.4
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+...+..+...+...|++++|+..++++.+.+|.++.+|..++.+|...|++++|++.+++..+..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 567788888889999999999999999999999999999999999999999999999998887653
No 195
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=4.2e-06 Score=76.89 Aligned_cols=119 Identities=8% Similarity=0.006 Sum_probs=80.9
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCC
Q 038550 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTS 137 (423)
Q Consensus 62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~ 137 (423)
..+...+.+.|++++|.+.+++.++.. +.+..++..+..+|.+.|++++|.+.+ +..+.+..+|..+..+|...|
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334445667777888888888777664 345677777777888888888887777 334556677888888888888
Q ss_pred ChhhHHHHHHHHHhcCCCCchhhHHHHHHH--HHhHhhHHhhhHHHH
Q 038550 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISA--CANLAAIKQGKEIHG 182 (423)
Q Consensus 138 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 182 (423)
++++|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888887753 2234455555544 777888888888887
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.10 E-value=8.9e-06 Score=61.30 Aligned_cols=114 Identities=11% Similarity=-0.077 Sum_probs=78.7
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-C-----CH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVG-Y-----DP-----VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p-----~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 293 (423)
..+......+.+.|++++|+..|++..+.... | +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l----- 86 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY----- 86 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 44666777888999999999999999875322 1 11 15555555566666666666665555431
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-HhHH----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-ANIW----GALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
|++. .+.|+ ...| .....++...|++++|+..|+++.++.|.+......+
T Consensus 87 -----------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 87 -----------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp -----------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred -----------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 2211 33664 4466 7888899999999999999999999988876655444
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.02 E-value=3.2e-05 Score=52.61 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
..+..+...+...|++++|+..|++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++.+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 34445555555666666666665554 2222 445566666666777777777777777777777776666666666554
Q ss_pred c
Q 038550 373 A 373 (423)
Q Consensus 373 ~ 373 (423)
.
T Consensus 90 ~ 90 (91)
T 1na3_A 90 Q 90 (91)
T ss_dssp H
T ss_pred c
Confidence 3
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.98 E-value=0.00015 Score=68.01 Aligned_cols=163 Identities=8% Similarity=-0.010 Sum_probs=130.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc----------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038550 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL----------VEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306 (423)
Q Consensus 237 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (423)
....++|++.++++...... +...|+.--.++...|+ ++++...++.+.+.. +-+..+|+.-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34456889999999986433 56677776666666666 899999999999875 5577788877778888
Q ss_pred cC--ChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc--------
Q 038550 307 AG--LMEDAVKLIKNL-PVEP-DANIWGALLGACRIYG-NVELGAWAAEHLFMLKPQHCGYYILLSNMYAEA-------- 373 (423)
Q Consensus 307 ~~--~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------- 373 (423)
.+ +++++++.++++ ...| +...|+.-...+...| .++++++.++++.+.+|.+..+|.....++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 88 679999999998 4444 7788888777788888 899999999999999999999999988887764
Q ss_pred ------CChhHHHHHHHHHHhccccCCCCCcccccc
Q 038550 374 ------GKWDEASKVRELMKSREAKKNPGCSWVQTR 403 (423)
Q Consensus 374 ------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 403 (423)
+.++++++.+++... +.|+....|.-.+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~ 233 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHR 233 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHH
Confidence 567889999988876 4577777777544
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.97 E-value=8.7e-05 Score=55.27 Aligned_cols=110 Identities=9% Similarity=-0.109 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHH
Q 038550 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI----YGNVELGAWAA 349 (423)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 349 (423)
++++|...|++..+.| .|... |...|...+.+++|++.|++.-..-++..+..|...|.. .+++++|...|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 3444444444444443 12211 333344444444455554444112344444444444444 45566666666
Q ss_pred HHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhcc
Q 038550 350 EHLFMLKPQHCGYYILLSNMYAE----AGKWDEASKVRELMKSRE 390 (423)
Q Consensus 350 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 390 (423)
+++.+. .++..+..|+..|.. .+++++|..++++..+.|
T Consensus 85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 665554 344556666666666 566666666666665554
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.96 E-value=6.6e-05 Score=51.31 Aligned_cols=69 Identities=14% Similarity=0.045 Sum_probs=60.3
Q ss_pred CCHhHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcccc
Q 038550 324 PDANIWGALLGACRIYGN---VELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392 (423)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 392 (423)
.|+..+..+..++...++ .++|..+++++.+.+|.++.+...++..+.+.|++++|+..|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 467778888888765544 799999999999999999999999999999999999999999999887543
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.95 E-value=6.4e-06 Score=61.91 Aligned_cols=96 Identities=9% Similarity=0.036 Sum_probs=58.0
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHH
Q 038550 271 HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350 (423)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 350 (423)
+.+.+++|.+.++...+.. +.+...|..+..++...++++.+...++ .+++|+..|+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~~eAi~~le 70 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HHHHHHHHHH
Confidence 3445566666666666543 3345555555555555544432222111 2457777777
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcC-----------ChhHHHHHHHHHHhc
Q 038550 351 HLFMLKPQHCGYYILLSNMYAEAG-----------KWDEASKVRELMKSR 389 (423)
Q Consensus 351 ~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~ 389 (423)
++++++|.+..+|..++.+|...| ++++|++.|++..+.
T Consensus 71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 777777777777777777777654 677777777777664
No 202
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.93 E-value=8.7e-05 Score=65.64 Aligned_cols=90 Identities=8% Similarity=-0.075 Sum_probs=52.0
Q ss_pred cchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHH
Q 038550 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202 (423)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (423)
..+|..+..+|.+.|++++|+..+++.++.. +.+...+..+..++...|++++|...++++.+..+. +...+..+..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3455666666666666666666666666543 234455666666666666666666666666655432 34444555555
Q ss_pred HHhcCCHHHHHH
Q 038550 203 YTRSGRIDLANK 214 (423)
Q Consensus 203 ~~~~~~~~~A~~ 214 (423)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=5.3e-05 Score=53.70 Aligned_cols=67 Identities=10% Similarity=-0.024 Sum_probs=61.7
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
++...+..+...+...|++++|+..++++.+..|.++.++..++.++...|++++|+..+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3456788888999999999999999999999999999999999999999999999999999998754
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.88 E-value=7e-05 Score=68.48 Aligned_cols=131 Identities=8% Similarity=-0.063 Sum_probs=70.1
Q ss_pred HHhCCChHHHHHHHhhchhCC---CCCC----chhHHHHHHHhhcCCCCccHHHHHHHHHHc-----CC-CCc-hHHHHH
Q 038550 33 FAQNRLELKALQLVREMPIHN---EFPN----SVTLTNVLPACARGHFLRPGKEIHARIIRK-----GL-NFD-LFLTNA 98 (423)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ 98 (423)
+..+|++++|..++++.++.. +.|+ ..+++.+..+|...|++++|..++++.++. |. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445677777777666654321 1111 235666666666666666666666665432 11 111 233444
Q ss_pred HHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCc-hhhHHHHHHHHHhHhhHHhh
Q 038550 99 LTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD-VVSFMGAISACANLAAIKQG 177 (423)
Q Consensus 99 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a 177 (423)
|...|...|++++|+.++ ++|+++++...... .|+ ..+...+..++...+.+++|
T Consensus 399 La~~~~~~G~~~eA~~~~-----------------------~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMI-----------------------CKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp HHHHHHHTTCHHHHHHHH-----------------------HHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH-----------------------HHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555444443 33334443333222 233 23455566667788889999
Q ss_pred hHHHHHHHHh
Q 038550 178 KEIHGVTIRK 187 (423)
Q Consensus 178 ~~~~~~~~~~ 187 (423)
+.++..+++.
T Consensus 455 e~~~~~~~~~ 464 (490)
T 3n71_A 455 EFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.87 E-value=1.8e-05 Score=59.52 Aligned_cols=106 Identities=10% Similarity=0.045 Sum_probs=72.7
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH----------HHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038550 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE----------KGKKYFDEMQADSVKPTEMHYACMVDLL 304 (423)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (423)
.+.+.+++|...++...+... -+...|..+..++...++++ +|+..|++.++.. +-+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 456789999999999988743 37888988888888887754 6666666666643 22345555555555
Q ss_pred HhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchH
Q 038550 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY 363 (423)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 363 (423)
...|.+ .|+.. ...|++++|+..|+++++++|.+....
T Consensus 91 ~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 91 TSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp HHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 544432 23221 112689999999999999999975443
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.76 E-value=0.00013 Score=49.50 Aligned_cols=66 Identities=21% Similarity=0.258 Sum_probs=60.4
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+...+..+...+...|++++|+..++++.+..|.++..+..++.++...|++++|+..+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 355777888899999999999999999999999999999999999999999999999999988753
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.73 E-value=9.8e-05 Score=52.87 Aligned_cols=80 Identities=11% Similarity=0.048 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFML 355 (423)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 355 (423)
|...|++..+.. +.+...+..+...|...|++++|+..|++. ...| +...|..+..++...|++++|...++++.+.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555555542 334556666666666667777776666665 2233 4556666777777777777777777777776
Q ss_pred CCC
Q 038550 356 KPQ 358 (423)
Q Consensus 356 ~p~ 358 (423)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 653
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.72 E-value=0.00064 Score=50.48 Aligned_cols=112 Identities=11% Similarity=-0.073 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHH
Q 038550 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR----AGLMEDA 313 (423)
Q Consensus 238 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 313 (423)
+++++|..+|++..+.| .|+.. +...|...+..++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788999999998887 33333 6677777788888999999998865 55677778888887 7899999
Q ss_pred HHHHhhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCC
Q 038550 314 VKLIKNLPVEPDANIWGALLGACRI----YGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 357 (423)
+++|++.-..-++..+..|...|.. .++.++|...++++.+.+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999988333567778888888888 8899999999999988753
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.60 E-value=0.00013 Score=50.50 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=53.2
Q ss_pred HHHHHHhcCChHHHHHHHhhC-CCCC-CHh-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 300 MVDLLGRAGLMEDAVKLIKNL-PVEP-DAN-IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
....+...|++++|...|+++ ...| +.. .+..+..++...|++++|+..++++.+.+|.++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 344566677777777777766 3344 455 67777777778888888888888888888877766532 344
Q ss_pred hHHHHHHHHHHh
Q 038550 377 DEASKVRELMKS 388 (423)
Q Consensus 377 ~~A~~~~~~m~~ 388 (423)
.++...+++...
T Consensus 78 ~~a~~~~~~~~~ 89 (99)
T 2kc7_A 78 MDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHCCTTH
T ss_pred HHHHHHHHHHhc
Confidence 455555555443
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.60 E-value=0.00021 Score=64.26 Aligned_cols=82 Identities=7% Similarity=0.031 Sum_probs=63.9
Q ss_pred cCChHHHHHHHhhC---------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcc---hHHHHHH
Q 038550 307 AGLMEDAVKLIKNL---------PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFM-----LKPQHCG---YYILLSN 368 (423)
Q Consensus 307 ~~~~~~a~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~ 368 (423)
.|++++|+.++++. ...|+ ..+++.|..+|...|++++|+.+++++++ .+|++|. .++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777654 12343 35788889999999999999999999876 3566654 4778999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 038550 369 MYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~ 388 (423)
.|..+|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998865
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.53 E-value=1.2e-05 Score=70.78 Aligned_cols=209 Identities=11% Similarity=0.067 Sum_probs=122.9
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHH
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (423)
.|+..|..++....+.|.+++-+..+...++.. -++..=+.|+-+|++.+++.+-.+++. .|+..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHH
Confidence 455666777777777777777777666555442 233444566777777777665554432 35555556666
Q ss_pred HHHHhcCChHHHHHHhchh-------------------------cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCC
Q 038550 101 DMYAKCGCLNLAQNVFNIS-------------------------FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155 (423)
Q Consensus 101 ~~~~~~g~~~~a~~~~~~~-------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 155 (423)
+-|...|.++.|.-+|... ..++.+|-.+-.+|...+++.-|.-.--.+.- .
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---h 228 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---H 228 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---C
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---c
Confidence 6677777777776666211 12556677777777777777666554444432 2
Q ss_pred CchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhc----cCCCC-------Ch
Q 038550 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD----CLPVK-------DS 224 (423)
Q Consensus 156 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----~~~~~-------~~ 224 (423)
|| -...++..|-..|.+++.+.+++..... -......|+-|.-.|++- ++++..+-++ ++.-| ..
T Consensus 229 ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~a 304 (624)
T 3lvg_A 229 AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQA 304 (624)
T ss_dssp SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTT
T ss_pred HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 22 1223444566677777777777766531 224556667777667664 3444444333 33322 44
Q ss_pred hhHHHHHHHHhccCCHHHHHH
Q 038550 225 ASWNTLILGYGMLGEVDTAIN 245 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~ 245 (423)
..|..++-.|+.-.+++.|..
T Consensus 305 hLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 305 HLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TCHHHHHHHHHHHTCHHHHHH
T ss_pred hhHHHHHHHHhcchhHHHHHH
Confidence 567777777777777776543
No 212
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.52 E-value=0.0043 Score=44.32 Aligned_cols=148 Identities=9% Similarity=0.006 Sum_probs=103.7
Q ss_pred HHHHHHH--HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038550 227 WNTLILG--YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLL 304 (423)
Q Consensus 227 ~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (423)
...|+.+ +.-.|..++..++..+.... .+..-||.+|.-....-+-+-..++++.+-+. .|.
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi---------- 71 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL---------- 71 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------
Confidence 3344443 44568888888888887764 25566777766555555555555555544332 121
Q ss_pred HhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 038550 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384 (423)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 384 (423)
..+|++......+-.++ .+...++..+..+..+|+-+.-.+++..+....+.++.+...++.+|.+.|+..+|.+++.
T Consensus 72 s~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GGCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 23556666666665553 3445566677888999999999999999877888889999999999999999999999999
Q ss_pred HHHhcccc
Q 038550 385 LMKSREAK 392 (423)
Q Consensus 385 ~m~~~~~~ 392 (423)
+.-++|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 99999874
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.47 E-value=0.00038 Score=48.04 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=54.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCG-YYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
....+...|++++|+..++++.+..|.++. .+..++.+|...|++++|+..+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456678999999999999999999999999 99999999999999999999999998764
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.41 E-value=0.00072 Score=60.76 Aligned_cols=94 Identities=12% Similarity=-0.064 Sum_probs=72.7
Q ss_pred ccCcHHHHHHHHHHHHHc---CCCCC----hhhHHHHHHHHHhcCChHHHHHHHhhC---------CCCCCH-hHHHHHH
Q 038550 271 HGGLVEKGKKYFDEMQAD---SVKPT----EMHYACMVDLLGRAGLMEDAVKLIKNL---------PVEPDA-NIWGALL 333 (423)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~---------~~~~~~-~~~~~l~ 333 (423)
..|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++. ...|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887763 12232 467888999999999999999988776 244543 4788999
Q ss_pred HHHHhcCChhHHHHHHHHHHh-----cCCCCcchHH
Q 038550 334 GACRIYGNVELGAWAAEHLFM-----LKPQHCGYYI 364 (423)
Q Consensus 334 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 364 (423)
..|...|++++|+.+++++.+ .+|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999977 4677765543
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.40 E-value=0.00071 Score=60.87 Aligned_cols=88 Identities=13% Similarity=0.142 Sum_probs=62.5
Q ss_pred HHHHHhcCChHHHHHHHhhC---------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcc---h
Q 038550 301 VDLLGRAGLMEDAVKLIKNL---------PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFM-----LKPQHCG---Y 362 (423)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~ 362 (423)
+..+.+.|++++|+.++++. ...|+ ..+++.|..+|...|++++|+.+++++++ .+|.+|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455667777777777654 11222 34677788888888888888888888766 3455554 4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 363 YILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
++.|+..|..+|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77788888899999999888888754
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.39 E-value=0.00086 Score=46.47 Aligned_cols=65 Identities=12% Similarity=0.033 Sum_probs=40.7
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (423)
+...+..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|...+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455666666666667777777777666665322 4456666666666677777777666666543
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.35 E-value=0.0024 Score=57.40 Aligned_cols=100 Identities=12% Similarity=-0.054 Sum_probs=77.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHHc---CCCCC----hhhHHHHHHHHHhcCChHHHHHHHhhC---------CCCCC-HhH
Q 038550 266 LTACSHGGLVEKGKKYFDEMQAD---SVKPT----EMHYACMVDLLGRAGLMEDAVKLIKNL---------PVEPD-ANI 328 (423)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~---------~~~~~-~~~ 328 (423)
+..+.+.|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566788999999999988764 12232 457888899999999999999988766 24454 346
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcchHHH
Q 038550 329 WGALLGACRIYGNVELGAWAAEHLFM-----LKPQHCGYYIL 365 (423)
Q Consensus 329 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 365 (423)
++.|...|...|++++|+.+++++.+ .+|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88899999999999999999999977 46887766543
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.34 E-value=0.011 Score=51.09 Aligned_cols=136 Identities=12% Similarity=0.023 Sum_probs=61.9
Q ss_pred CChhhHHHHHHHHh--ccC---CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcc--------CcHHHHHHHHHHHHH
Q 038550 222 KDSASWNTLILGYG--MLG---EVDTAINLFEAMREDGVGYD-PVSYIAILTACSHG--------GLVEKGKKYFDEMQA 287 (423)
Q Consensus 222 ~~~~~~~~li~~~~--~~g---~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~ 287 (423)
.+...|...+++.. ..+ +..+|..+|++..+. .|+ ...|..+..+|... .........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35566666555432 222 346778888887775 343 34444443333210 000011111111111
Q ss_pred c-CCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 288 D-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 288 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
. ..+.+..+|..+...+...|++++|...++++ .+.|+...|..+...+...|++++|.+.++++..++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 1 11334444444444444445555555555554 233444444444455555555555555555555555543
No 219
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.26 E-value=0.13 Score=48.34 Aligned_cols=314 Identities=8% Similarity=-0.049 Sum_probs=156.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCC-chHHHHHHHHHHH
Q 038550 26 WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYA 104 (423)
Q Consensus 26 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 104 (423)
|..... ..+.|++..+..+...+...-+. .-..|..+...+.. .... ++-.-+.+..-.| ....-+.-+..+.
T Consensus 10 ~~~a~~-a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l~~-~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 10 YAQIKQ-AWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDLMN-QPAV---TVTNFVRANPTLPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHH-HHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTGGG-CCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCccc-CCHH---HHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence 444444 45678888888887776543221 11244444333321 1222 4444444432222 3344556677788
Q ss_pred hcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHh--hhHHHH
Q 038550 105 KCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ--GKEIHG 182 (423)
Q Consensus 105 ~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~--a~~~~~ 182 (423)
+.+++.....++...+.+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|.+.. ...=++
T Consensus 84 ~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~ 162 (618)
T 1qsa_A 84 RREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIR 162 (618)
T ss_dssp HTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 8899999888775445555556667788888899888888777776655 3445566666666665443322 111111
Q ss_pred HHHHhc-----------cCcch-HHHHHHHHHHHhcCCHHHHHHHhccCCCCChh---hHHHHHHHHhccCCHHHHHHHH
Q 038550 183 VTIRKH-----------LHTHL-FVANSILDFYTRSGRIDLANKIFDCLPVKDSA---SWNTLILGYGMLGEVDTAINLF 247 (423)
Q Consensus 183 ~~~~~~-----------~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~ 247 (423)
.+...| +.++. .....++..+.+ ...+........ ++.. .+..-+.-+.+ .+.+.|...+
T Consensus 163 ~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar-~d~~~A~~~~ 237 (618)
T 1qsa_A 163 LAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAFASVAR-QDAENARLMI 237 (618)
T ss_dssp HHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHHHHHHH-HCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhHHHHHHHHHHHHh-cCHHHHHHHH
Confidence 111111 11111 111222222211 122222222211 1111 11112222333 3677787777
Q ss_pred HHHHHcCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 038550 248 EAMREDGVGYDPVS----YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323 (423)
Q Consensus 248 ~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 323 (423)
....... ..+... ...+...+...+...++...+...... ..+.......+..-.+.|+++.|...|+.|...
T Consensus 238 ~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~ 314 (618)
T 1qsa_A 238 PSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPME 314 (618)
T ss_dssp HHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT
T ss_pred Hhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHcccc
Confidence 7776543 223322 222333334444244555555554432 233333334444445668888888888887433
Q ss_pred C-C-HhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 324 P-D-ANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 324 ~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
+ + ..-.-=+.+++...|+.++|..+|+.+.+
T Consensus 315 ~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 315 AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2 1 22222234566677888888888887764
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.19 E-value=0.032 Score=54.86 Aligned_cols=155 Identities=11% Similarity=0.093 Sum_probs=99.9
Q ss_pred HHhcCCChhhHHH-HHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHH
Q 038550 132 GYSQTSDCSESLS-LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210 (423)
Q Consensus 132 ~~~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 210 (423)
.....+++++|.+ ++.. + |+......++..+.+.|.++.|.++.+. + ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~-----~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-------Q-----DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------H-----HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-------c-----chheehhhhcCCHH
Confidence 3345667777655 3311 1 1112225566666677777777655421 1 11233456789999
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 038550 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290 (423)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 290 (423)
.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+.....|
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~- 737 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG- 737 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 9999988775 678899999999999999999999998753 3344444555777777666665555544
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038550 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (423)
-++.-..+|.+.|++++|++++.+++
T Consensus 738 -----~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 738 -----KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred -----chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 13444556677788888877776653
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.19 E-value=0.0054 Score=53.03 Aligned_cols=135 Identities=14% Similarity=0.081 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHHh--c---cCcHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHh---cC-C-------hHHHHHHH
Q 038550 255 VGYDPVSYIAILTACS--H---GGLVEKGKKYFDEMQADSVKPT-EMHYACMVDLLGR---AG-L-------MEDAVKLI 317 (423)
Q Consensus 255 ~~p~~~~~~~ll~~~~--~---~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~-~-------~~~a~~~~ 317 (423)
.+.+...|...+.+.. . .....+|..+|++..+. .|+ ...|..+..+|.- .+ . ...+.+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3557778888877643 2 23468899999999986 454 4455544444421 11 1 11222222
Q ss_pred hhCC-CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcccc
Q 038550 318 KNLP-VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392 (423)
Q Consensus 318 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 392 (423)
..+. ...++.++..+...+...|++++|...++++..++|. ...|..++..+.-.|++++|.+.+++....+..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 2332 2447888888888788889999999999999999964 567788899999999999999999998876543
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.01 E-value=0.033 Score=54.75 Aligned_cols=168 Identities=13% Similarity=0.077 Sum_probs=106.7
Q ss_pred HHHHHhCCChHHHHH-HHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 038550 30 VANFAQNRLELKALQ-LVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108 (423)
Q Consensus 30 l~~~~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 108 (423)
.......+++++|.+ ++..+. +......++..+.+.|.++.|.++.+. |. .-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCC
Confidence 344556888988877 553322 122336777778888888888766531 11 11344567899
Q ss_pred hHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhc
Q 038550 109 LNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188 (423)
Q Consensus 109 ~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 188 (423)
++.|.++.+.. .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...++.+...++-+.....|
T Consensus 668 ~~~A~~~~~~~-~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 668 LTLARDLLTDE-SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHHTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhh-CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999887433 3567899999999999999999999998753 3344445555666666555554444433
Q ss_pred cCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038550 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249 (423)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 249 (423)
. ++....+|.+.|++++|.+++ .+.+++++|..+-+.
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 2 133344566677777776654 455566666665443
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.00 E-value=0.0035 Score=46.56 Aligned_cols=91 Identities=16% Similarity=0.018 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHhhC-CCC-C--CHhHHHHHHHHHHhcCChhHHH
Q 038550 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG---LMEDAVKLIKNL-PVE-P--DANIWGALLGACRIYGNVELGA 346 (423)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~~~a~ 346 (423)
....+.+.|.+....| +++..+...+..++++.+ ++++++.+|++. ... | +...+-.|.-++.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455566666665554 356666666677777766 455777777666 222 4 2445555667889999999999
Q ss_pred HHHHHHHhcCCCCcchHHH
Q 038550 347 WAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 347 ~~~~~~~~~~p~~~~~~~~ 365 (423)
+.++.+.+.+|++..+...
T Consensus 92 ~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHH
Confidence 9999999999988655443
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.83 E-value=0.0045 Score=51.31 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=27.6
Q ss_pred CChhHHHHHHHHHHhcCCCC-cchHHHHHHHHHhc-CChhHHHHHHHHHHhcccc
Q 038550 340 GNVELGAWAAEHLFMLKPQH-CGYYILLSNMYAEA-GKWDEASKVRELMKSREAK 392 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 392 (423)
|+.++|.+.|+++++++|.. ...+..+++.++.. |+.++|.+.+++.......
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 55555555555555555542 55555555555542 5555555555555554443
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.78 E-value=0.01 Score=40.30 Aligned_cols=69 Identities=12% Similarity=0.000 Sum_probs=45.8
Q ss_pred CCChhhHHHHHHHHHhcCC---hHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 291 KPTEMHYACMVDLLGRAGL---MEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
+.+...+..+..++...++ .++|..+|++. ...| ++.....+...+...|++++|+..|+++.+..|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3455566666666654443 57777777766 4445 45566666677777888888888888888777763
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.76 E-value=0.01 Score=41.23 Aligned_cols=69 Identities=12% Similarity=0.009 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhhC-----C----CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 298 ACMVDLLGRAGLMEDAVKLIKNL-----P----VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~-----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
..|...+.+.|+++.|...|+.. . -.+...++..|..++.+.|+++.|...++++.+..|.++.+...+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34444445555555555554443 0 123456778888899999999999999999999999987765544
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.066 Score=40.82 Aligned_cols=104 Identities=17% Similarity=0.130 Sum_probs=62.6
Q ss_pred HHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 038550 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280 (423)
Q Consensus 201 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 280 (423)
....+.|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~--~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN--DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHhC--CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 33456677777777766552 566777777777777777777777776542 2333334455566655555
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038550 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321 (423)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (423)
+-+.....| -++.-...+.-.|+++++.++|.+.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 544444443 13444455556677777777776664
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.65 E-value=3.2e-06 Score=74.43 Aligned_cols=262 Identities=10% Similarity=0.060 Sum_probs=151.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHH
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (423)
.+..|..|..+..+.+++.+|++.|-+ .+ |+..|..++.++.+.|.++.-...+....+.. .++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---AD---DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---CS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---CC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 456788888888888888887765532 22 66778888888888888888888776655442 23333445666
Q ss_pred HHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHH
Q 038550 102 MYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 181 (423)
+|++.++..+.++++. .||..-...+..-|...|.++.|.-+|
T Consensus 125 ayAk~~rL~elEefl~-------------------------------------~~N~A~iq~VGDrcf~e~lYeAAKily 167 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------------------------------------GPNNAHIQQVGDRCYDEKMYDAAKLLY 167 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------------------------------------CCSSSCTHHHHHHHHHSCCSTTSSTTG
T ss_pred HHHhhCcHHHHHHHHc-------------------------------------CCCcccHHHHHHHHHHccCHHHHHHHH
Confidence 6666666555444432 233333334444444444444444333
Q ss_pred HHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH
Q 038550 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261 (423)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 261 (423)
..+. -|..|...+.+.|++..|.+.-++.. ++.||..+-.+|...+.+.-|.-.--.+.- .|| -
T Consensus 168 s~is---------N~akLAstLV~L~~yq~AVdaArKAn--s~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--e 231 (624)
T 3lvg_A 168 NNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--E 231 (624)
T ss_dssp GGSC---------CCTTTSSSSSSCSGGGSSTTTTTTCC--SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--C
T ss_pred HhCc---------cHHHHHHHHHHHHHHHHHHHHHHhcC--ChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--H
Confidence 2211 12233444455566655544433332 667788877888888777766544333332 121 2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCC---C-------CHhHHHH
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE---P-------DANIWGA 331 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-------~~~~~~~ 331 (423)
...++..|...|.+++-+.+++.-.... +...-.|+.|.-.|++- ++++.++.++....+ | ....|.-
T Consensus 232 L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~E 309 (624)
T 3lvg_A 232 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 309 (624)
T ss_dssp CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHH
Confidence 3345566777888888777777766331 34556677777777665 566666666554111 1 2334555
Q ss_pred HHHHHHhcCChhHHH
Q 038550 332 LLGACRIYGNVELGA 346 (423)
Q Consensus 332 l~~~~~~~~~~~~a~ 346 (423)
+.-.|.+...++.|.
T Consensus 310 lvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 310 LVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHTCHHHHH
T ss_pred HHHHHhcchhHHHHH
Confidence 666666666666553
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.55 E-value=0.0075 Score=44.77 Aligned_cols=80 Identities=11% Similarity=-0.039 Sum_probs=64.1
Q ss_pred HHHHHHHhhC--CCCCCHhHHHHHHHHHHhcC---ChhHHHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCChhHHHHHH
Q 038550 311 EDAVKLIKNL--PVEPDANIWGALLGACRIYG---NVELGAWAAEHLFMLK-P-QHCGYYILLSNMYAEAGKWDEASKVR 383 (423)
Q Consensus 311 ~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 383 (423)
..+.+.|.+. .-.++..+.-.+..++++++ +.++++.+++...+.+ | .+...+..++.+|.+.|++++|++++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444443 22468888888889999988 6779999999999988 6 45778888999999999999999999
Q ss_pred HHHHhcc
Q 038550 384 ELMKSRE 390 (423)
Q Consensus 384 ~~m~~~~ 390 (423)
+.+.+..
T Consensus 95 ~~lL~ie 101 (152)
T 1pc2_A 95 RGLLQTE 101 (152)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998743
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.11 E-value=0.064 Score=38.23 Aligned_cols=92 Identities=17% Similarity=0.035 Sum_probs=59.1
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH---HHHHHhhC-CCC-C--CHhHHHHHHHHHHhcCChhHH
Q 038550 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED---AVKLIKNL-PVE-P--DANIWGALLGACRIYGNVELG 345 (423)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~~~a 345 (423)
.....+.+-|.+....| .++..+--.+..++++...... ++.+++.+ ... | .....-.|.-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555565555544 3566665566667777666554 66666665 222 3 222344455678899999999
Q ss_pred HHHHHHHHhcCCCCcchHHH
Q 038550 346 AWAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 346 ~~~~~~~~~~~p~~~~~~~~ 365 (423)
.+.++.+++..|.+..+...
T Consensus 94 ~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHH
Confidence 99999999999988766543
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.08 E-value=0.035 Score=38.47 Aligned_cols=65 Identities=12% Similarity=-0.074 Sum_probs=54.8
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLK-------PQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
+..-...|...+...|+++.|..-++.+.+.. +..+.++..++.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678889999999999999999998753 344567889999999999999999999999764
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.06 E-value=0.013 Score=48.55 Aligned_cols=82 Identities=16% Similarity=0.098 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhc-----CChHHHHHHHhhC-CCCCC--HhHHHHHHHHHHhc-CCh
Q 038550 275 VEKGKKYFDEMQADSVKPT---EMHYACMVDLLGRA-----GLMEDAVKLIKNL-PVEPD--ANIWGALLGACRIY-GNV 342 (423)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~-~~~~~--~~~~~~l~~~~~~~-~~~ 342 (423)
...|...+++..+. .|+ ...|..|...|... |+.++|.+.|++. .+.|+ ..++..+...++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45566666666664 344 45666777777763 7888888888776 55562 56666667777664 888
Q ss_pred hHHHHHHHHHHhcCCC
Q 038550 343 ELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 343 ~~a~~~~~~~~~~~p~ 358 (423)
+++.+.++++....|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888887765
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.29 Score=37.26 Aligned_cols=129 Identities=12% Similarity=0.039 Sum_probs=86.2
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038550 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311 (423)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (423)
......|+++.|.++.+++ -+...|..|.......|+++-|+..|.+... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445778999998887765 3778899999999999999999988887654 344555666678877
Q ss_pred HHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 312 ~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
....+-+....+- -++.....+...|+++++.+++.+... +..-.......|-.+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 7665544331111 244455667788999999998866432 111111222346677788887776
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.03 E-value=0.26 Score=35.41 Aligned_cols=140 Identities=9% Similarity=-0.066 Sum_probs=83.5
Q ss_pred hcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHH
Q 038550 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 213 (423)
.-.|..++..+++.+.... .+..-|+-+|.-....-+-+-..++++ +.|--.|.. .+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd---~IGkiFDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLD---KIGSYFDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHH---HHGGGSCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHH---HHhhhcCcH----------hhhcHHHHH
Confidence 3456677777777776652 233444444433333333333333333 333222221 223333333
Q ss_pred HHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC
Q 038550 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291 (423)
Q Consensus 214 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 291 (423)
..+-.+. .+.......+..+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 82 ~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3333222 2344556667778888888888888888644 34678888888889999999999999999998888864
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.89 E-value=0.037 Score=40.55 Aligned_cols=108 Identities=10% Similarity=0.024 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHhccCcH------HHHHHHHHHHHHcCCCCChh-hHHHHHH------HHHhcCChHHHHHHHhhC---C
Q 038550 258 DPVSYIAILTACSHGGLV------EKGKKYFDEMQADSVKPTEM-HYACMVD------LLGRAGLMEDAVKLIKNL---P 321 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~---~ 321 (423)
|..+|-..+....+.|++ ++..++|++.... ++|+.. .|...+. .+...+++++|.++|+.+ .
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 667787777777777888 7888888888775 566531 1111111 112346777777777766 1
Q ss_pred CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 322 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
-+- ..+|....+.-.++|++..|.+++.++....|.........+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 122 566666666667778888888888888777776655444443
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.67 E-value=0.16 Score=37.30 Aligned_cols=51 Identities=6% Similarity=-0.109 Sum_probs=23.4
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+|.++|.++|+.+.+....-..+|...+..-.++|+.+.|.+++.+....+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 445555555555544422223334444444445555555555555444433
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.051 Score=52.01 Aligned_cols=55 Identities=13% Similarity=0.011 Sum_probs=51.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 333 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
.+.+...|+++.|+.+.+++...-|.+-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4667889999999999999999999999999999999999999999999999985
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.15 E-value=0.83 Score=44.86 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=56.4
Q ss_pred HHHHHHhcCCHHHHHHHhccCC-CCChhhH--HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH-HHH---HHHHHHhc
Q 038550 199 ILDFYTRSGRIDLANKIFDCLP-VKDSASW--NTLILGYGMLGEVDTAINLFEAMREDGVGYDPV-SYI---AILTACSH 271 (423)
Q Consensus 199 l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~---~ll~~~~~ 271 (423)
+...+.-.|+-+....++..+. ..+.... ..+.-++...|+.+.+..+++.+... .++. -|. .+.-+|+.
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTT
T ss_pred HhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcC
Confidence 3344455566665555554432 1122222 22233344566666666666666653 1222 122 23345666
Q ss_pred cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
.|+.....+++..+.... ..+......+.-++...|+.+.+.++++.+
T Consensus 573 TGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp SCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred CCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 667666666666666531 222333333333444456655555665544
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.40 E-value=0.12 Score=45.64 Aligned_cols=55 Identities=15% Similarity=0.021 Sum_probs=33.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
++..+...|+.+++...++.+...+|-+...+..++.+|.+.|+..+|++.|+++
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555666666666666666666666666666666666666666666666554
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.39 E-value=0.15 Score=36.33 Aligned_cols=85 Identities=11% Similarity=-0.078 Sum_probs=62.9
Q ss_pred hcCChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhH---HHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCChhH
Q 038550 306 RAGLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVEL---GAWAAEHLFMLK-P-QHCGYYILLSNMYAEAGKWDE 378 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~ 378 (423)
....+..+.+.|.+. .-.++..+--.+..++.++.+... ++.+++.....+ | ........|+-++.+.|+|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 333444555555544 124777777778888888887665 889999988876 4 345667778889999999999
Q ss_pred HHHHHHHHHhcc
Q 038550 379 ASKVRELMKSRE 390 (423)
Q Consensus 379 A~~~~~~m~~~~ 390 (423)
|++.++.+.+..
T Consensus 93 A~~~~~~lL~~e 104 (126)
T 1nzn_A 93 ALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999998754
No 241
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.23 E-value=2.2 Score=36.03 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHH----HHHHHHhcCCCCchhhHHHHHHHHHh
Q 038550 95 LTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLS----LFSEMRLLGMKHDVVSFMGAISACAN 170 (423)
Q Consensus 95 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~ll~~~~~ 170 (423)
.|.++..=|.+.+++++|.+++. .-...+.+.|+...|-+ +++-..+.+++++......++..+..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~----------~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELIS----------QGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44556666778888888888761 11233455566555544 35555666778887777777766644
Q ss_pred HhhHH-hhhHHHHHHHH----hc--cCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhcc---CCH
Q 038550 171 LAAIK-QGKEIHGVTIR----KH--LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML---GEV 240 (423)
Q Consensus 171 ~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 240 (423)
....+ .-.++++.+++ .| ..-++.....+...|.+.|++.+|+.-|-.-...+...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 22111 12233444433 22 1235666777888888888888888766422222344444433332222 322
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 241 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
.++ +...-..++ -|...++...|..+++...+
T Consensus 185 ~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 185 STV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred chH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 221 111112222 34566788888888776653
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.11 E-value=0.41 Score=35.88 Aligned_cols=118 Identities=12% Similarity=0.014 Sum_probs=64.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCCh-------hhHHHHHHHHHhcCChHHHHHHHhhC----CCCC-CHh
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE-------MHYACMVDLLGRAGLMEDAVKLIKNL----PVEP-DAN 327 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~-~~~ 327 (423)
++..-+..+...+.++.|+-+.+.+... +..|+. .++..+.+++...+++.+|...|++. ..-+ +..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444566677778888888777776554 223332 24455667777788888887777764 1111 110
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 328 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
....+. . ...... -. ..+.+...-..++.+|.+.|++++|+.+++.+..+.
T Consensus 102 ~~~~~~-~---~ss~p~-------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 102 VRPSTG-N---SASTPQ-------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred cccccc-c---cCCCcc-------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 100000 0 000000 00 012233555668889999999999999988765443
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.13 E-value=9.9 Score=37.54 Aligned_cols=83 Identities=13% Similarity=0.038 Sum_probs=34.9
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCC
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVSY--IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA--CMVDLLGRAGL 309 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ 309 (423)
++-.|+.+....+++.+.+.. +.... ..+.-++...|+.+.+..+++.+.... .|....-. ++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 344455555555555544421 22222 222222334555555555555555421 12221111 12233445555
Q ss_pred hHHHHHHHhhC
Q 038550 310 MEDAVKLIKNL 320 (423)
Q Consensus 310 ~~~a~~~~~~~ 320 (423)
.....+++..+
T Consensus 576 ~~aIq~LL~~~ 586 (963)
T 4ady_A 576 NSAVKRLLHVA 586 (963)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 54444455444
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.82 E-value=4.7 Score=41.34 Aligned_cols=80 Identities=6% Similarity=-0.047 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHh----chhcCCc-----chHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHH
Q 038550 94 FLTNALTDMYAKCGCLNLAQNVF----NISFRDE-----VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGA 164 (423)
Q Consensus 94 ~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 164 (423)
.-|..++..+.+.+.++.+.++- +...++. ..|..+...+...|++++|...+-.+.....+ ......+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 34667777777778777776655 1122221 24777888888889999988888877665433 3345566
Q ss_pred HHHHHhHhhHH
Q 038550 165 ISACANLAAIK 175 (423)
Q Consensus 165 l~~~~~~~~~~ 175 (423)
+..+|..+..+
T Consensus 978 V~~lce~~~~~ 988 (1139)
T 4fhn_B 978 VNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHCCHH
T ss_pred HHHHHhCCChh
Confidence 66666655443
No 245
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.69 E-value=2.1 Score=31.15 Aligned_cols=74 Identities=12% Similarity=0.005 Sum_probs=49.6
Q ss_pred CCChhhHHHHHHHHHhcCCh---HHHHHHHhhC-CCCC-CH-hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHH
Q 038550 291 KPTEMHYACMVDLLGRAGLM---EDAVKLIKNL-PVEP-DA-NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~-~~~~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 364 (423)
.|+..+--.+..++++..+. .+++.+++.+ ...| +. ...-.|.-++.+.|++++|.+..+.+++..|.+..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56666666667777777654 4566666665 2234 22 33444556788889999999999999998888755433
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.62 E-value=3.6 Score=42.13 Aligned_cols=162 Identities=9% Similarity=0.001 Sum_probs=88.6
Q ss_pred HHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhh
Q 038550 98 ALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177 (423)
Q Consensus 98 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 177 (423)
.++..+...+..+-+.++..-.+.+...--.+..+|...|++++|...|.+.-. |+..+......+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~------------ 883 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLR------------ 883 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHH------------
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhc------------
Confidence 344555566666666665554555555555566777777778777777765421 2211111000000
Q ss_pred hHHHHHHHHhc--cCcchHHHHHHHHHHHhcCCHHHHHHHhcc----CCCCCh----hhHHHHHHHHhccCCHHHHHHHH
Q 038550 178 KEIHGVTIRKH--LHTHLFVANSILDFYTRSGRIDLANKIFDC----LPVKDS----ASWNTLILGYGMLGEVDTAINLF 247 (423)
Q Consensus 178 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g~~~~a~~~~ 247 (423)
-+..+.... ...-..-|..++..+.+.+.++.+.++-.. ....+. ..|..+.+++...|++++|...+
T Consensus 884 --~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 884 --EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp --HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred --ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 000011100 111223455666677777776666554432 222221 25778888888999999998888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 038550 248 EAMREDGVGYDPVSYIAILTACSHGGLVE 276 (423)
Q Consensus 248 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 276 (423)
-.+..... -...+..|+..+|..|..+
T Consensus 962 ~~~pd~~~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 962 MVLSTTPL--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred HhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence 88776543 3455666776666665543
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.02 E-value=0.88 Score=40.15 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=39.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC--------CCCCCHhH
Q 038550 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--------PVEPDANI 328 (423)
Q Consensus 263 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~~~~~ 328 (423)
..++.++...|+++++...+..+.... +.+...+..+|.+|.+.|+..+|++.|+++ |+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344555566666666666666665543 445566666677777777766666665543 55565444
No 248
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=90.36 E-value=3.3 Score=32.16 Aligned_cols=47 Identities=4% Similarity=-0.172 Sum_probs=24.0
Q ss_pred hHHHHHHHhhC---CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038550 310 MEDAVKLIKNL---PVE-PDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356 (423)
Q Consensus 310 ~~~a~~~~~~~---~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 356 (423)
..++.++|..| ++- --...|......+...|++.+|..+|+..++.+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44445554444 222 234455555555555566666666666655544
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.35 E-value=9.7 Score=34.18 Aligned_cols=184 Identities=10% Similarity=0.070 Sum_probs=114.1
Q ss_pred CCChhhHHHHHHHHHhc-----CCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHH----HHhc
Q 038550 136 TSDCSESLSLFSEMRLL-----GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF----YTRS 206 (423)
Q Consensus 136 ~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 206 (423)
.++++.|++.+..+.+. ...........++..|...++++...+.+..+.+....... ....+++. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~-ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL-SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH-HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHhcC
Confidence 36788888887666542 23445667778889999999999988877766553322221 12233332 2233
Q ss_pred CCHH--HHHHHhccCC---CC--C-----hhhHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHH
Q 038550 207 GRID--LANKIFDCLP---VK--D-----SASWNTLILGYGMLGEVDTAINLFEAMRED--GVGYD---PVSYIAILTAC 269 (423)
Q Consensus 207 ~~~~--~A~~~~~~~~---~~--~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~ll~~~ 269 (423)
...+ .-..+.+.+. .. - ......|...+...|++.+|..++..+... |.... ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3222 2333333332 11 1 122355777888899999999999998642 22211 23566667788
Q ss_pred hccCcHHHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 270 SHGGLVEKGKKYFDEMQAD----SVKPT--EMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
...+++.+|..+++++... ..+|+ ...+...+..+...+++.+|-+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8899999999999887532 11222 234566677777888888887776654
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.17 E-value=2.7 Score=31.53 Aligned_cols=58 Identities=5% Similarity=-0.128 Sum_probs=31.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 230 LILGYGMLGEVDTAINLFEAMREDG-VGYD-------PVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~~~-~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
-++.+...|.++.|+-+...+.... ..|+ ..++..+..++...+++.+|...|++.+.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445555666666665555533211 1122 12455566666777777777777776543
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.13 E-value=2.5 Score=28.53 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=38.0
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
.+.+-|++.+..+.+++|.+.+|+..|.++++-++..-.....+|..++
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3467789999999999999999999999999888776654455566554
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.12 E-value=3.1 Score=28.08 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038550 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303 (423)
Q Consensus 239 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (423)
+.=+..+-++.+....+.|++......+.+|.+.+++..|.++++-++.+ ..+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 44466777777777788899999999999999999999999999888876 22334567766643
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.89 E-value=1.1 Score=32.07 Aligned_cols=74 Identities=12% Similarity=0.005 Sum_probs=46.2
Q ss_pred CCChhhHHHHHHHHHhcCCh---HHHHHHHhhC-CCCC--CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHH
Q 038550 291 KPTEMHYACMVDLLGRAGLM---EDAVKLIKNL-PVEP--DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 364 (423)
.|+..+--.+..++++..+. .+++.+++.+ ...| ....+--|.-++.+.|++++|.+..+.+.+..|.+..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 45655555566667766654 3555666555 2234 2334445556777888888888888888888887755433
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.71 E-value=7.4 Score=31.85 Aligned_cols=118 Identities=11% Similarity=0.062 Sum_probs=63.8
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcC
Q 038550 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM----HYACMVDLLGRAG 308 (423)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~ 308 (423)
...+.|+++++++.+..-.+.. +-|...-..++..+|-.|++++|.+-++...+. .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH-----
Confidence 4556777777777777666653 236666667777777777777777777776664 33322 33333332
Q ss_pred ChHHHH-HHHhhC---C-CCCCHhHHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCCc
Q 038550 309 LMEDAV-KLIKNL---P-VEPDANIWGALLGAC--RIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 309 ~~~~a~-~~~~~~---~-~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
+... ++|.-- + +.....-...++.+. ...|+.++|..+-.++.+.-|..+
T Consensus 78 --E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 78 --AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp --HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred --HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 1111 122211 0 111222333344443 345777777777777766655543
No 255
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.44 E-value=0.96 Score=43.44 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=72.9
Q ss_pred HHHHHHHhCCC-hHHHHHHHhhchhCCCCCCchhH--HHHHHHhhcCCC-CccHHHHHHHHHHc------CCCCc-h---
Q 038550 28 AMVANFAQNRL-ELKALQLVREMPIHNEFPNSVTL--TNVLPACARGHF-LRPGKEIHARIIRK------GLNFD-L--- 93 (423)
Q Consensus 28 ~ll~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~~-~--- 93 (423)
.++..+...++ ++.|+++|+++.... |...++ ..++..+...++ --+|.+++.+.++. ..++. .
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 44455555666 578999999988764 433332 223333333322 12344444444321 11211 1
Q ss_pred -------HHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHH
Q 038550 94 -------FLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149 (423)
Q Consensus 94 -------~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 149 (423)
.....-.+.+...|+++-|+++- ...+.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222234466789999998888 445667789999999999999999999988876
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.78 E-value=1.2 Score=36.38 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=32.5
Q ss_pred HHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 304 LGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
+.+.|++++|+.....- +-.| |...-..|+..+|-.|++++|.+-++...+++|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 44556666666554433 3344 55555556666666666666666666666666553
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.19 E-value=4.7 Score=28.88 Aligned_cols=74 Identities=11% Similarity=-0.014 Sum_probs=51.4
Q ss_pred CCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHh
Q 038550 254 GVGYDPVSYIAILTACSHGGL---VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDAN 327 (423)
Q Consensus 254 ~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~ 327 (423)
+-.|+..+-..+..++.+..+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+ .+.|+-.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 345677776666777776654 4568888888887652123445556777888999999999998887 6677533
No 258
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=87.87 E-value=6.1 Score=29.14 Aligned_cols=79 Identities=15% Similarity=0.042 Sum_probs=45.3
Q ss_pred HHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 312 DAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK--PQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 312 ~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.+...|... ..+.|+.-...-+...-.. +.+..+|..+...+ .....+|...+..+...|++++|.++|+.=.+
T Consensus 53 rc~~~f~~~~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 53 HLMKEFLDKKKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444433 3344555444433322222 22566666665543 45556677777777777888888777777666
Q ss_pred ccccC
Q 038550 389 REAKK 393 (423)
Q Consensus 389 ~~~~~ 393 (423)
++.+|
T Consensus 130 ~~A~P 134 (152)
T 4a1g_A 130 NQAEP 134 (152)
T ss_dssp TTCBS
T ss_pred cCCcc
Confidence 66555
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.74 E-value=12 Score=31.66 Aligned_cols=166 Identities=14% Similarity=0.045 Sum_probs=98.5
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHhcc
Q 038550 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL----FEAMREDGVGYDPVSYIAILTACSHG 272 (423)
Q Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~~~ 272 (423)
.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.+++++......++..+..-
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 4455567777888888777532 22334556776665554 45556677888888877777776553
Q ss_pred CcHH-HHHHHHHHHHHc----CC--CCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhc---CCh
Q 038550 273 GLVE-KGKKYFDEMQAD----SV--KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY---GNV 342 (423)
Q Consensus 273 ~~~~-~a~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 342 (423)
..-+ .=.++++++++- |- .-+......+...|.+.|++.+|...|- .+..-|...+..++.-+... |..
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 2111 123344444432 21 1256677888889999999999998876 33222455555555444433 333
Q ss_pred hHHHHHHHHHHhcCCCCcchH-HHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 343 ELGAWAAEHLFMLKPQHCGYY-ILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 343 ~~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+ ...| ...+--|.-.|+...|..+++...+.
T Consensus 185 ~e---------------~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 ST---------------VAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HH---------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ch---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 32 2222 22234566788999999998877543
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.43 E-value=16 Score=32.00 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHH
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVT 184 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~ 184 (423)
....+...|.+.|+.++..+++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344445555555555555554433
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.10 E-value=15 Score=31.28 Aligned_cols=168 Identities=13% Similarity=0.038 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHH----HHHHHhcCCCCchhhHHHHHHHHHh
Q 038550 95 LTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSL----FSEMRLLGMKHDVVSFMGAISACAN 170 (423)
Q Consensus 95 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~~~~ 170 (423)
+|.++..=|.+.+++++|.+++- .-...+.+.|+...+-++ ++-+.+.++++|......++..+..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 45566666888999999998871 112334555665554444 3555667788888777777776654
Q ss_pred HhhHH-hhhHHHHHHHH----hc--cCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHH
Q 038550 171 LAAIK-QGKEIHGVTIR----KH--LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243 (423)
Q Consensus 171 ~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 243 (423)
...-+ .=..+++.+++ .| ..-++.....+...|.+.+++.+|+.-|-.-..+.+..+..++.-+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e- 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT- 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG-
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc-
Confidence 33211 11223333333 22 233556667788899999999999888743222223455444433333322111
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 244 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
++...-..++ -|...++...|..+++...+
T Consensus 186 -------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 34556677777776666554
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.78 E-value=7.9 Score=27.76 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038550 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303 (423)
Q Consensus 239 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (423)
|.=+..+-++.+....+.|++......+.+|.+.+++..|..+|+-++.+ ..+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 34456667777777788999999999999999999999999999988877 23445567777653
No 263
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=84.72 E-value=10 Score=28.45 Aligned_cols=31 Identities=10% Similarity=-0.066 Sum_probs=15.9
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038550 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLK 356 (423)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 356 (423)
+..|......+-..|++.+|..+|+..++.+
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3444444445555555555555555555543
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.42 E-value=7 Score=28.02 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=40.3
Q ss_pred HhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 317 IKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
+-.+.+-|++.+....+++|.+.+|+..|.++++-++..-.+...+|.-++
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 334467899999999999999999999999999998876655455666654
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.11 E-value=7.5 Score=26.09 Aligned_cols=85 Identities=11% Similarity=-0.073 Sum_probs=57.4
Q ss_pred CCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHh
Q 038550 73 FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL 151 (423)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 151 (423)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+. ....||...|.+|-. .+.|..+++...+.++-.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666665542 3333333445577889999999888 566788888876654 467888888888888887
Q ss_pred cCCCCchhhHH
Q 038550 152 LGMKHDVVSFM 162 (423)
Q Consensus 152 ~~~~~~~~~~~ 162 (423)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 77 56655553
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.05 E-value=7.4 Score=34.74 Aligned_cols=60 Identities=8% Similarity=-0.066 Sum_probs=34.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
+...+...|.+.|+++.|.+.+.++... +...-...+..+++.+...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4555666666666666666666666654 22222344555566666666666666665554
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.56 E-value=8 Score=26.00 Aligned_cols=85 Identities=12% Similarity=0.013 Sum_probs=53.9
Q ss_pred CCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHh
Q 038550 73 FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL 151 (423)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 151 (423)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+. ....||...|.+|-.. +.|..+++...+.++-.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45666666666655542 2233333345567788888888888 5567777777666543 56777777777777777
Q ss_pred cCCCCchhhHH
Q 038550 152 LGMKHDVVSFM 162 (423)
Q Consensus 152 ~~~~~~~~~~~ 162 (423)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 55555553
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.88 E-value=13 Score=27.08 Aligned_cols=65 Identities=8% Similarity=-0.032 Sum_probs=29.2
Q ss_pred CCHhHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 324 PDANIWGALLGACRIYGN---VELGAWAAEHLFMLKPQ-HCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
|+..+--.+..++.++.+ ..+++.+++......|. .......|+-++.+.|++++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344443344444444432 23444455555444442 223333444455555555555555555444
No 269
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=81.09 E-value=38 Score=32.08 Aligned_cols=43 Identities=19% Similarity=0.090 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhc
Q 038550 27 NAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70 (423)
Q Consensus 27 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 70 (423)
=.+|-.|.+.|.+++|.++.++.... +.--...+...+..++.
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 35677889999999999998876542 11112456666666664
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.52 E-value=12 Score=25.20 Aligned_cols=78 Identities=13% Similarity=-0.022 Sum_probs=50.3
Q ss_pred hHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038550 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252 (423)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 252 (423)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34556655555555443 22222223445677888888888888888888888776654 366777777777777776
Q ss_pred cC
Q 038550 253 DG 254 (423)
Q Consensus 253 ~~ 254 (423)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.83 E-value=12 Score=25.12 Aligned_cols=78 Identities=15% Similarity=-0.017 Sum_probs=45.4
Q ss_pred hHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038550 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252 (423)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 252 (423)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++-. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555554433 12211222345667777777777777777777777766544 355666666666666665
Q ss_pred cC
Q 038550 253 DG 254 (423)
Q Consensus 253 ~~ 254 (423)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=78.56 E-value=5.2 Score=34.54 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCCCCC---hhhHHHHHHHHhccCC--HHHHHHHHHHHHHcCCCCC
Q 038550 196 ANSILDFYTRSGRIDLANKIFDCLPVKD---SASWNTLILGYGMLGE--VDTAINLFEAMREDGVGYD 258 (423)
Q Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 258 (423)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+....++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 3567888888999999999999888663 2334445555554433 4557777777777765533
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.57 E-value=32 Score=29.26 Aligned_cols=165 Identities=15% Similarity=0.078 Sum_probs=99.7
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHhcc
Q 038550 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLF----EAMREDGVGYDPVSYIAILTACSHG 272 (423)
Q Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~~~ 272 (423)
.++..=|.+.+++++|.+++.. -...+.+.|+...|.++. +-..+.++++|......++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 4455557778888888776532 123345556655554443 5556677888888777777776554
Q ss_pred Cc--HHHHHHHHHHHHHc----C--CCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhH
Q 038550 273 GL--VEKGKKYFDEMQAD----S--VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344 (423)
Q Consensus 273 ~~--~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 344 (423)
.. .+. ..+++++++- | ..-+......+...|.+.+++.+|...|= .+..+.+..+..++..+...+.
T Consensus 108 ~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~--- 182 (336)
T 3lpz_A 108 QPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE--- 182 (336)
T ss_dssp CTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC---
T ss_pred CCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC---
Confidence 32 221 2333333322 2 12345667778899999999999999884 4544555666555544444332
Q ss_pred HHHHHHHHHhcCCCCcchHH-HHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 345 GAWAAEHLFMLKPQHCGYYI-LLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 345 a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
|.+...|. ..+--|.-.++...|..+++...+.
T Consensus 183 ------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~ 216 (336)
T 3lpz_A 183 ------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSA 216 (336)
T ss_dssp ------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 22333332 3344577889999999888777653
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.51 E-value=29 Score=30.95 Aligned_cols=62 Identities=10% Similarity=-0.074 Sum_probs=41.1
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC--chhhHHHHHHHHHhHhhHHhhhHHHHHHHH
Q 038550 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKH--DVVSFMGAISACANLAAIKQGKEIHGVTIR 186 (423)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 186 (423)
++..+...|.+.|+++.|.+.|.++......+ -...+..++..+...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45667777778888888888888877643222 234556666677777777777777666543
No 275
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.40 E-value=40 Score=30.19 Aligned_cols=198 Identities=9% Similarity=-0.023 Sum_probs=113.6
Q ss_pred cCChHHHHHHh---ch-------hcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHH----hH
Q 038550 106 CGCLNLAQNVF---NI-------SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA----NL 171 (423)
Q Consensus 106 ~g~~~~a~~~~---~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~ 171 (423)
.|+++.|.+.+ +. ..........++..|...++++...+.+.-+....... ......++..+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788888777 11 11123346778889999999999988777665432222 222334444332 22
Q ss_pred hhHHh--hhHHHHHHHH--hc-cCc---chHHHHHHHHHHHhcCCHHHHHHHhccCCC----C-----ChhhHHHHHHHH
Q 038550 172 AAIKQ--GKEIHGVTIR--KH-LHT---HLFVANSILDFYTRSGRIDLANKIFDCLPV----K-----DSASWNTLILGY 234 (423)
Q Consensus 172 ~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~-----~~~~~~~li~~~ 234 (423)
...+. -..+.+.+.. .| +-. .......|...|...|++.+|..++..+.. . -+..+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22111 1111111110 11 111 122335678899999999999999987651 1 135677778889
Q ss_pred hccCCHHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038550 235 GMLGEVDTAINLFEAMRE----DGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308 (423)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~----~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (423)
...+++.+|..++.++.. ....|+. ..+...+..+...+++.+|.+. |..+...+...+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~---------------y~e~~~~~~~~~ 252 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY---------------LQEIYQTDAIKS 252 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH---------------HHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH---------------HHHHHhcccccC
Confidence 999999999999998743 2222221 2344445555566666665543 444556666667
Q ss_pred ChHHHHHHHhh
Q 038550 309 LMEDAVKLIKN 319 (423)
Q Consensus 309 ~~~~a~~~~~~ 319 (423)
+.......+..
T Consensus 253 d~~~~~~~L~~ 263 (445)
T 4b4t_P 253 DEAKWKPVLSH 263 (445)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 76655554443
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.34 E-value=25 Score=27.31 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=45.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 038550 237 LGEVDTAINLFEAMREDGVGYD-PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293 (423)
Q Consensus 237 ~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 293 (423)
.+....+..+|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4457788999999988876543 45677778888889999999999999888876664
No 277
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.23 E-value=52 Score=30.94 Aligned_cols=182 Identities=12% Similarity=-0.047 Sum_probs=87.1
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCC---hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 038550 199 ILDFYTRSGRIDLANKIFDCLPVKD---SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275 (423)
Q Consensus 199 l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 275 (423)
.+....+.|+++.|...|+.|.... ....-=+..++...|+.++|..+|+.+... . +|-.++.+ .+.|..
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa-~~Lg~~ 363 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA-QRIGEE 363 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH-HHTTCC
T ss_pred HHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH-HHcCCC
Confidence 3344445677777777777776431 222233344556667777777777776542 1 22222211 122210
Q ss_pred HHHHHHHHHHHHcCCCCC-hh-----hHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 038550 276 EKGKKYFDEMQADSVKPT-EM-----HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAA 349 (423)
Q Consensus 276 ~~a~~~~~~~~~~~~~~~-~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 349 (423)
-.. ....+.+. .. .-..-+..+...|....|...+..+.-..+......+.......|..+.++...
T Consensus 364 ~~~-------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 364 YEL-------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CCC-------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCC-------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 000 00000010 00 111234556778888888877766522334444445555556777777776555
Q ss_pred HHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCC
Q 038550 350 EHLFMLKP---QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394 (423)
Q Consensus 350 ~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 394 (423)
......+. .-|..|...+....+.-.++..+-.---..+.+..|.
T Consensus 437 ~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 437 IAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp HHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred HHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 44322210 1123355555556665556555433223345555554
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=74.72 E-value=23 Score=27.99 Aligned_cols=32 Identities=6% Similarity=-0.079 Sum_probs=18.4
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLK 356 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 356 (423)
-...|......+...|++.+|..+|+..++.+
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34455555555556666666666666665544
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.35 E-value=15 Score=29.96 Aligned_cols=11 Identities=27% Similarity=0.295 Sum_probs=4.8
Q ss_pred HHHhccccCCC
Q 038550 385 LMKSREAKKNP 395 (423)
Q Consensus 385 ~m~~~~~~~~~ 395 (423)
-+.+.|..++.
T Consensus 271 ~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 271 LLCKRGASTDC 281 (285)
T ss_dssp HHHHHSSCSCC
T ss_pred HHHHcCCCCCc
Confidence 33444544443
No 280
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=69.11 E-value=2.9 Score=29.15 Aligned_cols=69 Identities=9% Similarity=-0.110 Sum_probs=39.1
Q ss_pred ccccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHH
Q 038550 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 78 (423)
|-+++++++++.+..+ -..|.-.|...+..++.+-|.++++...+.| +...|...+-.|...=+++.++
T Consensus 16 ykkN~rw~qSI~L~Kk-----DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVL 84 (125)
T 3qil_A 16 PRGSHMWKQSVELAKK-----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVL 84 (125)
T ss_dssp SSSCCCCSSCCCCCSC-----CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHH
T ss_pred hhccccHHHHHHHHHh-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHH
Confidence 4555666666554433 1334445555666666777777776666655 5556666666555544444443
No 281
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=66.78 E-value=29 Score=28.59 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=9.5
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 038550 335 ACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 335 ~~~~~~~~~~a~~~~~~~~~ 354 (423)
..+..|+.+-+..+++....
T Consensus 167 ~A~~~g~~~~v~~Ll~~gad 186 (285)
T 3kea_A 167 ITIKNGHVDMMILLLDYMTS 186 (285)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHcCCC
Confidence 33445555555555544433
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=66.03 E-value=13 Score=29.41 Aligned_cols=82 Identities=12% Similarity=0.019 Sum_probs=36.4
Q ss_pred cCChHHHHHHHhhCCCCCCHh---HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 038550 307 AGLMEDAVKLIKNLPVEPDAN---IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVR 383 (423)
Q Consensus 307 ~~~~~~a~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 383 (423)
.+......+++.+.+..++.. .-.+.+...+..|+.+-+..+++.-......+..-...+ ....+.|+.+-+..++
T Consensus 152 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~v~~L~ 230 (240)
T 3eu9_A 152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL-DLAKQRKNVWMINHLQ 230 (240)
T ss_dssp HCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHH
T ss_pred hCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCcHHHHHHHH
Confidence 444445555555554332211 112334455677777766666655322222221112222 3335566666555555
Q ss_pred HHHHhc
Q 038550 384 ELMKSR 389 (423)
Q Consensus 384 ~~m~~~ 389 (423)
+...+.
T Consensus 231 ~~~~~~ 236 (240)
T 3eu9_A 231 EARQAK 236 (240)
T ss_dssp HHC---
T ss_pred Hhhhcc
Confidence 544433
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=63.90 E-value=51 Score=26.65 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=11.5
Q ss_pred HHHHHHhcCChHHHHHHh
Q 038550 99 LTDMYAKCGCLNLAQNVF 116 (423)
Q Consensus 99 l~~~~~~~g~~~~a~~~~ 116 (423)
.+...++.|+.+....++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 444556677777666666
No 284
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=62.14 E-value=52 Score=25.35 Aligned_cols=91 Identities=19% Similarity=0.012 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 038550 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGAC 336 (423)
Q Consensus 257 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 336 (423)
++...-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.|+.+....+.+.+. .++..+-...+.++
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADAL 167 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 34444444555555554432 2233333332 3455555555666666665433333333332 55666655666666
Q ss_pred HhcCChhHHHHHHHHHH
Q 038550 337 RIYGNVELGAWAAEHLF 353 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~ 353 (423)
...+. ..+...+..+.
T Consensus 168 ~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 168 GEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHCS-HHHHHHHHHHH
T ss_pred HHhCc-hhHHHHHHHHH
Confidence 66554 33444444443
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=60.98 E-value=62 Score=25.89 Aligned_cols=84 Identities=8% Similarity=0.039 Sum_probs=38.9
Q ss_pred HHHHhcCCChhhHHHHHHHHHhc--CCCC----chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHH
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLL--GMKH----DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (423)
+..+....++++|..++++..+. +.++ +.......+..-.....-.-+..+.+.+.. .+........+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 55666677777777777665432 1221 111222223333333333333344444422 23333344455566
Q ss_pred HhcCCHHHHHHHh
Q 038550 204 TRSGRIDLANKIF 216 (423)
Q Consensus 204 ~~~~~~~~A~~~~ 216 (423)
.+.|+.++|.++|
T Consensus 102 ~rLg~~~~A~~lf 114 (235)
T 2d2s_A 102 IKLGLPEQALDLF 114 (235)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHCCChhHHHHHH
Confidence 6666666666555
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=57.75 E-value=50 Score=26.47 Aligned_cols=89 Identities=10% Similarity=0.043 Sum_probs=56.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 229 TLILGYGMLGEVDTAINLFEAMRED--GVGY----DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 229 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
--++.+....++++|..++++..+. +.++ +.......+..-.....-.-+..+.+++.. .+........+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 4578888999999999999987642 2222 112233334444444444455555555532 445556667778
Q ss_pred HHHhcCChHHHHHHHhhC
Q 038550 303 LLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~ 320 (423)
.+.+.|+.++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 888999999999988765
No 287
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=57.65 E-value=1.2e+02 Score=30.43 Aligned_cols=51 Identities=6% Similarity=-0.117 Sum_probs=29.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
++..|...|..+-+.++ ... .+.+...--.+..+|...|++++|.++|+++
T Consensus 816 l~~~L~~~~~~~~a~eL----~~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQL----IGW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHH----GGG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHH----Hhh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555666666544432 222 2333332234566777888888888888877
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=57.28 E-value=53 Score=24.17 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCCC---hhhHHHHHHHHhccCC--HHHHHHHHHHHHHcCCC
Q 038550 197 NSILDFYTRSGRIDLANKIFDCLPVKD---SASWNTLILGYGMLGE--VDTAINLFEAMREDGVG 256 (423)
Q Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 256 (423)
..++.-|...|+.++|...++++..|. ..+...+..++-+.++ .+.+..++..+...|+-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 456777778888888888888877552 2233444445544322 45567777777766654
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.18 E-value=65 Score=23.69 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh
Q 038550 242 TAINLFEAMREDGVGYD-PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294 (423)
Q Consensus 242 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 294 (423)
++..+|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 37888999988876543 456777788888899999999999998888766643
No 290
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.10 E-value=69 Score=23.93 Aligned_cols=54 Identities=17% Similarity=0.322 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChh
Q 038550 242 TAINLFEAMREDGVGYD-PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM 295 (423)
Q Consensus 242 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 295 (423)
.+..+|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|...
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 36778888888876543 4567777777888899999999999988887677543
No 291
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=51.62 E-value=98 Score=25.30 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=8.0
Q ss_pred cCChhHHHHHHHHHHhcC
Q 038550 339 YGNVELGAWAAEHLFMLK 356 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~ 356 (423)
.|+.+-+..+++.-.+..
T Consensus 231 ~~~~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 231 LDDAEIAKMIIEKHVEYK 248 (285)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHcCCCCC
Confidence 444444444444444433
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.35 E-value=32 Score=24.44 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCC
Q 038550 197 NSILDFYTRSGRIDLANKIFDCLPVK 222 (423)
Q Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 222 (423)
..++.-|...|+.++|...++++..|
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p 36 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVP 36 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 44555566666666666666665544
No 293
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=50.59 E-value=31 Score=26.26 Aligned_cols=17 Identities=6% Similarity=0.001 Sum_probs=10.3
Q ss_pred HHhcCCHHHHHHHhccC
Q 038550 203 YTRSGRIDLANKIFDCL 219 (423)
Q Consensus 203 ~~~~~~~~~A~~~~~~~ 219 (423)
.+..|+.+....++..-
T Consensus 12 A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHTTCHHHHHHHHTCT
T ss_pred HHHhccHHHHHHHHHcC
Confidence 44566677666666543
No 294
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.10 E-value=81 Score=24.65 Aligned_cols=58 Identities=7% Similarity=-0.090 Sum_probs=29.2
Q ss_pred HHHHHhCCChHHHHHHHhhchhCCCCCCchh--HHHHHHHhhcCCCCccHHHHHHHHHHcCCCC
Q 038550 30 VANFAQNRLELKALQLVREMPIHNEFPNSVT--LTNVLPACARGHFLRPGKEIHARIIRKGLNF 91 (423)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 91 (423)
+...+..|+.+....+++.+.+.|..++... -.+.+...+..|+. ++++.+++.|..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~ 72 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP----SVVRLLVTAGASP 72 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH----HHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCH----HHHHHHHHcCCCc
Confidence 3445667777777777765555554433221 11233334444544 3444555555444
No 295
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=49.54 E-value=17 Score=24.38 Aligned_cols=37 Identities=14% Similarity=0.005 Sum_probs=21.0
Q ss_pred CChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccH
Q 038550 37 RLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPG 77 (423)
Q Consensus 37 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 77 (423)
.+.++|.++++.+...| ..+|..++.++...|....|
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 35666666766666654 24566666666554544333
No 296
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=49.33 E-value=1.4e+02 Score=26.25 Aligned_cols=16 Identities=6% Similarity=0.424 Sum_probs=8.6
Q ss_pred HHHhcCCHHHHHHHhc
Q 038550 202 FYTRSGRIDLANKIFD 217 (423)
Q Consensus 202 ~~~~~~~~~~A~~~~~ 217 (423)
..+..|+.+-+..+++
T Consensus 218 ~A~~~~~~~~~~~Ll~ 233 (437)
T 1n11_A 218 IAAKQNQVEVARSLLQ 233 (437)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3445566655555554
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.84 E-value=69 Score=22.70 Aligned_cols=25 Identities=4% Similarity=-0.164 Sum_probs=16.4
Q ss_pred HHHHHHHHHhHhhHHhhhHHHHHHH
Q 038550 161 FMGAISACANLAAIKQGKEIHGVTI 185 (423)
Q Consensus 161 ~~~ll~~~~~~~~~~~a~~~~~~~~ 185 (423)
...++.-|...|+.++|.+.++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4556666666777777777666654
No 298
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=48.31 E-value=87 Score=23.75 Aligned_cols=144 Identities=15% Similarity=0.025 Sum_probs=65.8
Q ss_pred HHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 038550 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 279 (423)
+..+.+.+..+....+.+.+..++...-...+.++...|+.+. ...+..+.. .++...-...+.++.+.++.+ +.
T Consensus 35 ~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~ 109 (201)
T 3ltj_A 35 AYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQIGDER-AV 109 (201)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GH
T ss_pred HHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HH
Confidence 3333333333333333333334444444444455555554322 222333332 245555555555555555532 23
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLF 353 (423)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 353 (423)
..+..+.. .++..+-...+.++.+.++.+....+.+.+. .++..+-...+.++...|+. .+...+..+.
T Consensus 110 ~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 110 EPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGGE-RVRAAMEKLA 178 (201)
T ss_dssp HHHHHHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHH
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 33333332 3455555555666666665443333333333 45666666666666666553 3444444443
No 299
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=47.49 E-value=1.3e+02 Score=25.33 Aligned_cols=194 Identities=11% Similarity=0.114 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCChHHHHHHh-chhcCC--cchHHHHHHHHhcCCC--hhhHHHHHHHHHhcCCCCchhh---HHHHHHH
Q 038550 96 TNALTDMYAKCGCLNLAQNVF-NISFRD--EVSYNILIVGYSQTSD--CSESLSLFSEMRLLGMKHDVVS---FMGAISA 167 (423)
Q Consensus 96 ~~~l~~~~~~~g~~~~a~~~~-~~~~~~--~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~ 167 (423)
...++.-|...|+.++|...+ +...|. ......++......++ -+.+-.++..+.. ++-+.... |..++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 456788899999999999999 333232 2222333443333333 3445556677754 43333333 3333333
Q ss_pred HHhHh-hHHhhhHHHHHHHH----hccCcchHHHHHHHHHHHhcCC--HHHHHHHhc------cCC----CC----Ch--
Q 038550 168 CANLA-AIKQGKEIHGVTIR----KHLHTHLFVANSILDFYTRSGR--IDLANKIFD------CLP----VK----DS-- 224 (423)
Q Consensus 168 ~~~~~-~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~------~~~----~~----~~-- 224 (423)
+.... +...|..++..+.. .++-|...........-...|. ...|..++. .+. .+ +.
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Confidence 33222 34445554444333 3332222111100000000000 222222221 111 01 11
Q ss_pred --hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHHcCCC
Q 038550 225 --ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG--LVEKGKKYFDEMQADSVK 291 (423)
Q Consensus 225 --~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~ 291 (423)
...+.++.-|...|+.++|.+.++++..-... .......+..++-+.+ ..+....++..+.+.|+-
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 12456777788888888888888887632121 1234445555555543 245566777777766543
No 300
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=46.98 E-value=61 Score=21.56 Aligned_cols=38 Identities=21% Similarity=0.106 Sum_probs=26.5
Q ss_pred CCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHH
Q 038550 207 GRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAI 244 (423)
Q Consensus 207 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 244 (423)
...+.|.++++.++...+.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35677777777777777777777777776666655443
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.65 E-value=74 Score=29.03 Aligned_cols=59 Identities=14% Similarity=0.158 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChh------hHH-HHHHHHHhcCChHHHHHHHhhC
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM------HYA-CMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~-~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
...++.++..|...+.++.|..+..+.. ++.+.. .|. .+.+.+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3456777777777777777877777664 221111 111 2234455667777777776654
No 302
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=45.84 E-value=1e+02 Score=27.07 Aligned_cols=331 Identities=13% Similarity=0.095 Sum_probs=152.2
Q ss_pred HHHHHHhCCChHHHHHHHhhchhCCCCCCch--hHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchH--HHHHHHHHHH
Q 038550 29 MVANFAQNRLELKALQLVREMPIHNEFPNSV--TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF--LTNALTDMYA 104 (423)
Q Consensus 29 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 104 (423)
.+...+..|+.+-+..+++ .|..|+.. ...+.+...+..|+.+- .+.+++.|..++.. .-.+.+...+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEV----AKYLLQNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHH----HHHHHHHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence 3444566777766555554 45544432 12234445556666554 44444555443321 1122344456
Q ss_pred hcCChHHHHHHhc-hhc---CCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCc---hhhHHHHHHHHHhHhhHHhh
Q 038550 105 KCGCLNLAQNVFN-ISF---RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD---VVSFMGAISACANLAAIKQG 177 (423)
Q Consensus 105 ~~g~~~~a~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a 177 (423)
..|+.+-+.-+++ ... .+..-++.| ...+..|+.+-+..+ .+.+..++ .... +.+...+..|+.+-+
T Consensus 89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L-~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v 162 (437)
T 1n11_A 89 RIGHTNMVKLLLENNANPNLATTAGHTPL-HIAAREGHVETVLAL----LEKEASQACMTKKGF-TPLHVAAKYGKVRVA 162 (437)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHH----HHTTCCSCCCCTTSC-CHHHHHHHTTCHHHH
T ss_pred HCCCHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcCCHHHHHHH----HhCCCCCcCCCCCCC-CHHHHHHHcCCHHHH
Confidence 6787776666662 222 222222233 333455665544443 44443332 2222 233444555665544
Q ss_pred hHHHHHHHHhccCcchHH--HHHHHHHHHhcCCHHHHHHHhccCCCCC---hhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038550 178 KEIHGVTIRKHLHTHLFV--ANSILDFYTRSGRIDLANKIFDCLPVKD---SASWNTLILGYGMLGEVDTAINLFEAMRE 252 (423)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 252 (423)
+.+.+.|..++... -.+.+...+..|+.+-+.-+++.-..++ ...++.+ ...+..|+.+-+ +.+.+
T Consensus 163 ----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~----~~Ll~ 233 (437)
T 1n11_A 163 ----ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEVA----RSLLQ 233 (437)
T ss_dssp ----HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHHH----HHHHH
T ss_pred ----HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHH----HHHHH
Confidence 44444554433210 1123445567788887777776544332 2223333 334556665544 44445
Q ss_pred cCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHhhCCCCC--
Q 038550 253 DGVGYDP---VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE---MHYACMVDLLGRAGLMEDAVKLIKNLPVEP-- 324 (423)
Q Consensus 253 ~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 324 (423)
.|..++. ...+.+. ..+..|..+ +++.+.+.|..++. .-.+. +...+..|+.+-+.-+++.- ..+
T Consensus 234 ~g~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g-~~~~~ 306 (437)
T 1n11_A 234 YGGSANAESVQGVTPLH-LAAQEGHAE----MVALLLSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVLIKHG-VMVDA 306 (437)
T ss_dssp TTCCTTCCCTTCCCHHH-HHHHTTCHH----HHHHHHTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHHT-CCTTC
T ss_pred cCCCCCCCCCCCCCHHH-HHHHCCCHH----HHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCC-ccCCC
Confidence 5544332 2223333 334455554 34444444443332 12222 33445677777666666542 122
Q ss_pred -CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCC
Q 038550 325 -DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395 (423)
Q Consensus 325 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 395 (423)
+..-. +.+...+..|+.+-...+++.-...+..+..-.+.|- .-...|+.+ +++.+.+.|..|+.
T Consensus 307 ~~~~g~-t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~-~A~~~g~~~----iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 307 TTRMGY-TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH-QAAQQGHTD----IVTLLLKNGASPNE 372 (437)
T ss_dssp CCSSCC-CHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCSCC
T ss_pred CCCCCC-CHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHH-HHHHCChHH----HHHHHHHCcCCCCC
Confidence 11112 2334445678877666555543322222222222332 223456543 44455566766654
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.81 E-value=42 Score=24.68 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=42.3
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHHcCCC
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG--LVEKGKKYFDEMQADSVK 291 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~ 291 (423)
..+.++.-|...|+.++|.+.++++...... .......+..++-+.+ ..+.+..++..+...|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3566788898999999999999998632111 2334455555665532 245677777777766543
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=45.77 E-value=1.7e+02 Score=26.30 Aligned_cols=139 Identities=10% Similarity=-0.004 Sum_probs=79.0
Q ss_pred CCHHHHHHHhccCCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 038550 207 GRIDLANKIFDCLPVKD-SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285 (423)
Q Consensus 207 ~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 285 (423)
.+.+-|.++-.+..-|. ...|..-...+...|++++|-++-...... +--+..|.+.+-..=...|+..-...+|..+
T Consensus 343 ~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~YF~~L 421 (494)
T 1bpo_A 343 QNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQYFGIL 421 (494)
T ss_dssp CCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 45555555555544332 233444556666777777777666554432 2235666666555545556666677777777
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 286 QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL 352 (423)
Q Consensus 286 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 352 (423)
.+.| +.+..---.+++.-...|+.+-.++.+.+=++..+...=..+ +..+...|..+|.++
T Consensus 422 l~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 422 LDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred hccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcCCccccHHhHhhh-----hhcCHHHHHHHHHHc
Confidence 7776 455444445566666777777777777766555554433222 333455555555443
No 305
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=45.13 E-value=1.1e+02 Score=23.78 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=38.6
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-----HHHHHHHHHHHHHcCCC
Q 038550 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL-----VEKGKKYFDEMQADSVK 291 (423)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 291 (423)
.+..+++.|+-++.+|.+.| .|....-..++.+...-|. ...|...++.....|.+
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35678999999999999999 7666666666666666554 33455555555555653
No 306
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=45.10 E-value=82 Score=23.75 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=34.2
Q ss_pred HHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHH--HHHHHHHHHhcCCh
Q 038550 32 NFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFL--TNALTDMYAKCGCL 109 (423)
Q Consensus 32 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~ 109 (423)
..+..|+.+....++..-...--..+..-++.+. ..++.|+ .++++.+++.|..++... -...+...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 85 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLN-IAVHNND----IEIAKALIDRGADINLQNSISDSPYLYAGAQGRT 85 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHH-HHHHHTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHH-HHHHcCC----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 3455677777666665432110011222223333 3334444 344455555555443221 11122233445666
Q ss_pred HHHHHHh
Q 038550 110 NLAQNVF 116 (423)
Q Consensus 110 ~~a~~~~ 116 (423)
+-+..++
T Consensus 86 ~~~~~Ll 92 (201)
T 3hra_A 86 EILAYML 92 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555555
No 307
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=45.05 E-value=56 Score=20.62 Aligned_cols=62 Identities=10% Similarity=0.134 Sum_probs=37.2
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 248 EAMREDGVGYDPVSYIAILTACSHGG-LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 248 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
+.+.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34566777766544 34455555543 4556777777777665555666666666666666543
No 308
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=44.88 E-value=1.1e+02 Score=26.06 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCC
Q 038550 197 NSILDFYTRSGRIDLANKIFDCLPVK 222 (423)
Q Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 222 (423)
..++.-|...|+.++|...++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34556666667777777777666654
No 309
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.61 E-value=94 Score=24.13 Aligned_cols=52 Identities=12% Similarity=-0.024 Sum_probs=26.0
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038550 199 ILDFYTRSGRIDLANKIFDCLPVK---DSASWNTLILGYGMLGEVDTAINLFEAMR 251 (423)
Q Consensus 199 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (423)
.+...+..|+.+-+.-+++.-..+ +..-.+ .+....+.|+.+-+..+++...
T Consensus 180 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 180 ALHWAVLAGNTTVISLLLEAGANVDAQNIKGES-ALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHHHhhh
Confidence 344555667777776666653322 111122 2333456667666555555433
No 310
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.55 E-value=1.6e+02 Score=29.43 Aligned_cols=127 Identities=11% Similarity=-0.012 Sum_probs=70.5
Q ss_pred HHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhh
Q 038550 99 LTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178 (423)
Q Consensus 99 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 178 (423)
++..+...|..+-|.++....+.+...--.+..+|...|++++|...|++.- .|+..+.......- ...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~----------~~~ 884 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLR----------EFQ 884 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGH----------HHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchh----------hhh
Confidence 5566777788887777766666666555567788899999999999998753 23322211110000 000
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhc----cCCCCCh----hhHHHHHHHHhccC
Q 038550 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD----CLPVKDS----ASWNTLILGYGMLG 238 (423)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----~~~~~~~----~~~~~li~~~~~~g 238 (423)
.++... ........-|..++..|-+.+-++-+.++-+ .+...|. ..|..+.++.+..|
T Consensus 885 ~ll~~~--e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 885 EIAEKY--HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHT--TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hccCcc--cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 000000 0001122356677777888887777655543 2323333 35666676666544
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=44.41 E-value=80 Score=22.83 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=38.5
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCC
Q 038550 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208 (423)
Q Consensus 147 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 208 (423)
+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.++..+..|....++.+...|-
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 44566777666543 34455555555566788888888777666666665556666666654
No 312
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.25 E-value=90 Score=22.74 Aligned_cols=60 Identities=5% Similarity=0.142 Sum_probs=28.3
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038550 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309 (423)
Q Consensus 249 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (423)
.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 345556554432 233344444444555666666666665444444443334444444443
No 313
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=43.63 E-value=1.1e+02 Score=23.61 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=34.4
Q ss_pred hHHHHHHHhhCCCCCCHh--HHH-----HHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 310 MEDAVKLIKNLPVEPDAN--IWG-----ALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 310 ~~~a~~~~~~~~~~~~~~--~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
++.|+.+|+.++..-|.. ... ..+..|.+.|.+++|.+++++..+..+.+...-.-|...-.+.+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccC
Confidence 466777777774332211 111 22345778888888888888877766665555555544333333
No 314
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=43.57 E-value=1.1e+02 Score=23.70 Aligned_cols=20 Identities=10% Similarity=-0.057 Sum_probs=13.2
Q ss_pred HHHHHhCCChHHHHHHHhhc
Q 038550 30 VANFAQNRLELKALQLVREM 49 (423)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~m 49 (423)
+...++.|+.+....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 45556677777777777654
No 315
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=42.83 E-value=43 Score=26.86 Aligned_cols=56 Identities=7% Similarity=-0.186 Sum_probs=32.7
Q ss_pred HHHHHhCCChHHHHHHHhhchhCCCCCCch-------hHHHHHHHhh--cCCCCccHHHHHHHHH
Q 038550 30 VANFAQNRLELKALQLVREMPIHNEFPNSV-------TLTNVLPACA--RGHFLRPGKEIHARII 85 (423)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~~ 85 (423)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 334566788887777777666655544433 2233433332 6677777776666543
No 316
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=41.60 E-value=83 Score=26.80 Aligned_cols=174 Identities=13% Similarity=0.034 Sum_probs=76.1
Q ss_pred HHhcCCHHHHHHHhccCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH--------------------HH
Q 038550 203 YTRSGRIDLANKIFDCLPVKDS-ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP--------------------VS 261 (423)
Q Consensus 203 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--------------------~~ 261 (423)
.+..|+.+-+.-+++.-...+. .-++. +...+..|+.+-+..+++.....|..|+. .-
T Consensus 60 A~~~g~~~~v~~Ll~~g~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 138 (364)
T 3ljn_A 60 ACKFGCVDTAKYLASVGEVHSLWHGQKP-IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKG 138 (364)
T ss_dssp HHHHCCHHHHHHHHHHCCCCCCBTTBCH-HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESC
T ss_pred HHHcCCHHHHHHHHHCCCCccccCCCCH-HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCC
Confidence 3444555555555544332221 11222 23334567776666666654444443332 11
Q ss_pred HHHHHHHHhccC--cHHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCChHHHHHHHhhCC------CC-CCHhHH
Q 038550 262 YIAILTACSHGG--LVEKGKKYFDEMQADSVKPTEM---HYACMVDLLGRAGLMEDAVKLIKNLP------VE-PDANIW 329 (423)
Q Consensus 262 ~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~------~~-~~~~~~ 329 (423)
.+.|.. .+..| ..+ +++.+.+.|..++.. -.+. +...+..|+.+-+..+++.-. +. .|..-.
T Consensus 139 ~t~L~~-A~~~g~~~~~----~v~~Ll~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~ 212 (364)
T 3ljn_A 139 QTALHW-CVGLGPEYLE----MIKILVQLGASPTAKDKADETP-LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN 212 (364)
T ss_dssp CCHHHH-HHHSCGGGHH----HHHHHHHHTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred CCHHHH-HHHcCCchHH----HHHHHHHcCCCCcccCCCCCCH-HHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence 233333 33445 444 333344444444322 2223 334456777777777766431 11 111111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 330 GALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 330 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
+.+...+..|+.+-+..+++.-...+..+..-.+.| ..-+..|+.+-+..+++.
T Consensus 213 -t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 213 -SHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp -CTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred -cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 223334566777655555443222222222222233 223455776666555554
No 317
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=41.53 E-value=82 Score=22.98 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=41.0
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHhHh-hHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCH
Q 038550 147 SEMRLLGMKHDVVSFMGAISACANLA-AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209 (423)
Q Consensus 147 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 209 (423)
+.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.++..+..|.-.-++.+...|-.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 446667777665433 4555555555 6677888888888877766666666667777776644
No 318
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.05 E-value=87 Score=24.46 Aligned_cols=183 Identities=9% Similarity=-0.009 Sum_probs=87.4
Q ss_pred HHHHHHhcCCHHHHHHHhccC-------CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHH
Q 038550 199 ILDFYTRSGRIDLANKIFDCL-------PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV---SYIAILTA 268 (423)
Q Consensus 199 l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~ 268 (423)
.+...++.|+.+.+..+++.+ ...+..-++.+. ..+..|+.+ +++.+.+.|..++.. -.+.+ ..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l-~~ 85 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLH-LAVITTLPS----VVRLLVTAGASPMALDRHGQTAA-HL 85 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHH-HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHH-HHHHcCCHH----HHHHHHHcCCCccccCCCCCCHH-HH
Confidence 455567789998888887621 123433344443 345567664 444555566555432 23333 33
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCH---hHHHHHHHHHHhcCCh
Q 038550 269 CSHGGLVEKGKKYFDEMQADSVKP---TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDA---NIWGALLGACRIYGNV 342 (423)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 342 (423)
.+..|+.+-+..+++.....++.+ +..-.+. +...+..|+.+-+..+++.- ..++. ..-.+.+...+..|+.
T Consensus 86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHHHHHHHcC-CCcccccccCCCcHHHHHHHcCCH
Confidence 445667665555544432111122 1122222 33345667776666666543 22221 1122344455677887
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCC
Q 038550 343 ELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394 (423)
Q Consensus 343 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 394 (423)
+-+..+++.-...+..+..-.+.+ ...+..|+.+ +++.+.+.|..++
T Consensus 164 ~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 164 SMVQLLLQHGANVNAQMYSGSSAL-HSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp HHHHHHHHTTCCTTCBCTTSCBHH-HHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHH----HHHHHHhcCCCCC
Confidence 766666554322222222212222 2234456654 4444555666554
No 319
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=41.00 E-value=67 Score=25.16 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=9.7
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 038550 369 MYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~ 388 (423)
.|.+.|.+++|.+++++..+
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 34455555555555554443
No 320
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=40.94 E-value=30 Score=20.59 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=17.1
Q ss_pred HhCCChHHHHHHHhhchhCCCCCC
Q 038550 34 AQNRLELKALQLVREMPIHNEFPN 57 (423)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~~~~p~ 57 (423)
...|+.+.|+..+-+|...+..|+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 345778888888888877666665
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.73 E-value=82 Score=22.77 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=31.0
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038550 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309 (423)
Q Consensus 249 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (423)
.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3555666655432 23334444445555666777777665444444444444455555543
No 322
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=40.49 E-value=1.7e+02 Score=24.75 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=42.3
Q ss_pred HhhCCCCCCH--hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 317 IKNLPVEPDA--NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 317 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
|...++.|.. -+...-+....+.+++..|-.+.+++++.+|.. ...++|.+++....+.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADSM 256 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHTS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcC
Confidence 4444556643 356777788899999999999999999999852 1334577777666543
No 323
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=40.17 E-value=79 Score=22.88 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=37.8
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCC
Q 038550 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208 (423)
Q Consensus 147 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 208 (423)
+.+++.|++++..= ..++..+...+ .-.|.++++.+.+.++..+..|.-.-++.+...|-
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34566677766542 34455555555 66788888888777766666655556666666664
No 324
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=40.12 E-value=1.3e+02 Score=23.46 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=39.7
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-----HHHHHHHHHHHHHcCCC
Q 038550 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL-----VEKGKKYFDEMQADSVK 291 (423)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 291 (423)
.+..+++.|+-++.+|++.|-.|....-..++.+...-|. ...|...++.....|.+
T Consensus 46 iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3568999999999999999987776666666666655553 33455555555555643
No 325
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.39 E-value=78 Score=22.54 Aligned_cols=60 Identities=12% Similarity=0.163 Sum_probs=35.5
Q ss_pred HHHhcCCCCchhhHHHHHHHHHhHh-hHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCC
Q 038550 148 EMRLLGMKHDVVSFMGAISACANLA-AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208 (423)
Q Consensus 148 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 208 (423)
.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.++..+..|...-++.+.+.|-
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 3556666665432 24455555544 566777788777777666665555555666666553
No 326
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=38.12 E-value=74 Score=20.02 Aligned_cols=61 Identities=10% Similarity=0.121 Sum_probs=41.1
Q ss_pred hchhCCCCCCchhHHHHHHHhhcCC-CCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCh
Q 038550 48 EMPIHNEFPNSVTLTNVLPACARGH-FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL 109 (423)
Q Consensus 48 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 109 (423)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3556777666544 45566666554 6778889999988876666666666677777776643
No 327
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=37.38 E-value=1.3e+02 Score=27.42 Aligned_cols=47 Identities=13% Similarity=-0.036 Sum_probs=28.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 339 YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
...++.|...|.++....|.+...|+.|+-.....|+.-+|.-.|-+
T Consensus 165 ~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~r 211 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHH
Confidence 34455666666666666666666666666666666665555544433
No 328
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=36.43 E-value=89 Score=20.43 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=22.4
Q ss_pred cCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCH
Q 038550 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240 (423)
Q Consensus 206 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 240 (423)
....++|..+++.+......+|..++.++...+..
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 45566666676666666666666666666665543
No 329
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.99 E-value=1.1e+02 Score=27.90 Aligned_cols=68 Identities=12% Similarity=0.004 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCCCCC----H--hHHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD----A--NIWGA-LLGACRIYGNVELGAWAAEHLFMLKPQHCG 361 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~--~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 361 (423)
...+|.+++.|...+.++.|..+..+..+..+ . ..|.- +.+.+.-.+++.+|.+.+..+...-|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 45677888888889999999999888743221 1 12222 235567788888998888888887776543
No 330
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.77 E-value=1.7e+02 Score=23.15 Aligned_cols=53 Identities=19% Similarity=0.364 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 038550 241 DTAINLFEAMREDGVGYD-PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293 (423)
Q Consensus 241 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 293 (423)
+.+..+|..|..+|+--. ...|......+...|++.+|..+|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 466788888888876543 45677777788888999999999988888766664
No 331
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=34.63 E-value=2.2e+02 Score=24.47 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=38.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHHcCCC
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG--LVEKGKKYFDEMQADSVK 291 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~ 291 (423)
.+.++.-|...|+.++|.+.++++..-.+. .......+..++-+.+ ..+...+++..+...|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 566777788888888888888887632222 1233444445555433 345566777777766543
No 332
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=34.60 E-value=1.8e+02 Score=23.44 Aligned_cols=244 Identities=9% Similarity=-0.056 Sum_probs=0.0
Q ss_pred HhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHH--HcCCC
Q 038550 13 YLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARII--RKGLN 90 (423)
Q Consensus 13 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~ 90 (423)
.+++.+..+|...-...+.++.+.|..+....+.+.+.. ++...-...+.++.+.+....+..-+-.++ ..--.
T Consensus 27 ~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d----~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d 102 (280)
T 1oyz_A 27 ELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSD----KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALND 102 (280)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTC----SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcC----CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcC
Q ss_pred CchHHHHHHHHHHHhcCC-----hHHHHHHh--chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHH
Q 038550 91 FDLFLTNALTDMYAKCGC-----LNLAQNVF--NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMG 163 (423)
Q Consensus 91 ~~~~~~~~l~~~~~~~g~-----~~~a~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 163 (423)
++..+....+.++...+. ...+...+ ....++...-...+.++...++ ..+...+..+.. .++...-..
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~ 178 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-KATIPLLINLLK---DPNGDVRNW 178 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHc---CCCHHHHHH
Q ss_pred HHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHH
Q 038550 164 AISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243 (423)
Q Consensus 164 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 243 (423)
.+.++...+ .........+...--.++..+-...+.++.+.|+......+...+..++ .-...+.++.+.|+ ..+
T Consensus 179 a~~aL~~~~--~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-~~~ 253 (280)
T 1oyz_A 179 AAFAININK--YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD-KTL 253 (280)
T ss_dssp HHHHHHHHT--CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-GGG
T ss_pred HHHHHHhhc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-hhh
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038550 244 INLFEAMREDGVGYDPVSYIAILTACSH 271 (423)
Q Consensus 244 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 271 (423)
...+.++.+. .++.......+..+.+
T Consensus 254 ~~~L~~~l~~--~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 254 LPVLDTMLYK--FDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHHHHHTT--SSCCHHHHHHHHHHTC
T ss_pred hHHHHHHHhc--CCCcHHHHHHHHHhhc
No 333
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=34.51 E-value=2.3e+02 Score=24.72 Aligned_cols=217 Identities=9% Similarity=-0.026 Sum_probs=99.6
Q ss_pred HHHHHHHhHhhHHhhhHHHHHHHHhccCc-----chHHHHHHHHHHHhcCCHHHHHHHhccCC------CCChhhHH---
Q 038550 163 GAISACANLAAIKQGKEIHGVTIRKHLHT-----HLFVANSILDFYTRSGRIDLANKIFDCLP------VKDSASWN--- 228 (423)
Q Consensus 163 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~--- 228 (423)
.++..|...|++.+|.+++..+.+.--.. -..++..-+..|...+++.++...+.... .+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 34455555666666655555555421111 12233334455556666666655554332 12221111
Q ss_pred -HHHHHHh-ccCCHHHHHHHHHHHHHcCCC---C---CHHHHHHHHHHHhccCcHHHHHHHHH-HHHHcCCCCChhhHHH
Q 038550 229 -TLILGYG-MLGEVDTAINLFEAMREDGVG---Y---DPVSYIAILTACSHGGLVEKGKKYFD-EMQADSVKPTEMHYAC 299 (423)
Q Consensus 229 -~li~~~~-~~g~~~~a~~~~~~m~~~~~~---p---~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ 299 (423)
.-...+. ..+++..|...|-+..+.--. | +...|..+.. ....... +...++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll~~~r~-el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IMLGQSD-DVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHTTCGG-GHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HHcCCHH-HHHHHhccccccccCCccHHHHHH
Confidence 1122344 567777777666655321001 1 1123333322 2222221 1112221 1111112355555666
Q ss_pred HHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 038550 300 MVDLLGRAGLMEDAVKLIKNLP--VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWD 377 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 377 (423)
++.+| ..+++.+...+++..+ +..|+.....+ ..+.+. --...+.++ ..|-..-.+..++..+.- ..+
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~-~~L~~~----Ir~~~L~~i--~~pYsrIsl~~iA~~l~l--s~~ 331 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHL-GTLYDT----MLEQNLCRI--IEPYSRVQVAHVAESIQL--PMP 331 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHH-HHHHHH----HHHHHHHHH--HTTCSEEEHHHHHHHHTC--CHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHH-HHHHHH----HHHHHHHHH--hHhhceeeHHHHHHHHCc--CHH
Confidence 66654 4667777777777652 34455432111 100000 000111111 246566667777766543 678
Q ss_pred HHHHHHHHHHhccc
Q 038550 378 EASKVRELMKSREA 391 (423)
Q Consensus 378 ~A~~~~~~m~~~~~ 391 (423)
+++..+-+|...|.
T Consensus 332 evE~~L~~lI~dg~ 345 (394)
T 3txn_A 332 QVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCC
Confidence 99999999998775
No 334
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.35 E-value=1.4e+02 Score=22.08 Aligned_cols=70 Identities=7% Similarity=-0.026 Sum_probs=48.2
Q ss_pred hHHHHHHHhh-chhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCh
Q 038550 39 ELKALQLVRE-MPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRK--GLNFDLFLTNALTDMYAKCGCL 109 (423)
Q Consensus 39 ~~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 109 (423)
.+.+++-+.+ +.+.|++++. .-..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445554444 4556877654 3456677777778899999999999887 6666766655566777777754
No 335
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=34.20 E-value=1.5e+02 Score=22.52 Aligned_cols=16 Identities=19% Similarity=0.003 Sum_probs=6.3
Q ss_pred chhhHHHHHHHHHhHh
Q 038550 157 DVVSFMGAISACANLA 172 (423)
Q Consensus 157 ~~~~~~~ll~~~~~~~ 172 (423)
+...-...+.++.+.+
T Consensus 94 ~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIG 109 (211)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333444444333
No 336
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=33.95 E-value=81 Score=19.20 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=29.6
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH
Q 038550 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171 (423)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 171 (423)
.++.++..++...-.+.++..+.+..+.| ..+..+|..-.+.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 35556666666666777777777777777 55666665555555544
No 337
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=33.38 E-value=64 Score=21.25 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 038550 363 YILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
+...++.+.+.|+|++|++..++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHH
Confidence 33445555666666666554444
No 338
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.31 E-value=1.7e+02 Score=22.68 Aligned_cols=63 Identities=10% Similarity=0.062 Sum_probs=36.8
Q ss_pred HHHHHHHHh---cCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhh-----HHhhhHHHHHHHHhcc
Q 038550 126 YNILIVGYS---QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA-----IKQGKEIHGVTIRKHL 189 (423)
Q Consensus 126 ~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 189 (423)
+-.+|+++. +..+.+.|+-.+-+|++.| .|....-..++.+.-..|. +..|...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334455554 4578899999999999988 6655555555555444442 2233344444444444
No 339
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.11 E-value=1.7e+02 Score=22.62 Aligned_cols=55 Identities=13% Similarity=0.002 Sum_probs=36.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-----HHHHHHHHHHHHHcC
Q 038550 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL-----VEKGKKYFDEMQADS 289 (423)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~ 289 (423)
.+..+++.|+-++.+|++.|-.|....-..++.+...-|. ...|...++.....|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 3567899999999999998877766666666666555443 234444455444445
No 340
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=32.91 E-value=49 Score=19.67 Aligned_cols=29 Identities=24% Similarity=0.080 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 038550 140 SESLSLFSEMRLLGMKHDVVSFMGAISAC 168 (423)
Q Consensus 140 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 168 (423)
++|.+.|.+|++..-.++..||.-.+..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56777777777655455566777777666
No 341
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=32.55 E-value=66 Score=25.18 Aligned_cols=18 Identities=6% Similarity=0.008 Sum_probs=10.7
Q ss_pred HhcCChhHHHHHHHHHHh
Q 038550 371 AEAGKWDEASKVRELMKS 388 (423)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~ 388 (423)
...|+...+.++.+.+.+
T Consensus 218 ~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQD 235 (237)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 355666666666666554
No 342
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.09 E-value=1.4e+02 Score=21.25 Aligned_cols=62 Identities=8% Similarity=0.081 Sum_probs=41.9
Q ss_pred hchhCCCCCCchhHHHHHHHhhcCC-CCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChH
Q 038550 48 EMPIHNEFPNSVTLTNVLPACARGH-FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN 110 (423)
Q Consensus 48 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 110 (423)
.+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3556777765543 34555666666 78899999999998876677766656667777776543
No 343
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.01 E-value=1.5e+02 Score=21.58 Aligned_cols=63 Identities=11% Similarity=0.128 Sum_probs=43.7
Q ss_pred hhchhCCCCCCchhHHHHHHHhhcCC-CCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChH
Q 038550 47 REMPIHNEFPNSVTLTNVLPACARGH-FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN 110 (423)
Q Consensus 47 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 110 (423)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 345667777665433 4555555666 78899999999998876777776666677777777543
No 344
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.96 E-value=1.5e+02 Score=21.58 Aligned_cols=62 Identities=13% Similarity=0.039 Sum_probs=41.6
Q ss_pred hhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCh
Q 038550 47 REMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL 109 (423)
Q Consensus 47 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 109 (423)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3456677765543 3345566666677889999999998887666776665666777777754
No 345
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.43 E-value=1.2e+02 Score=21.62 Aligned_cols=49 Identities=20% Similarity=0.200 Sum_probs=35.4
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChH
Q 038550 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN 110 (423)
Q Consensus 62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 110 (423)
..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4556666666778889999999988876667766655667777777543
No 346
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=31.06 E-value=52 Score=21.62 Aligned_cols=35 Identities=9% Similarity=0.131 Sum_probs=19.5
Q ss_pred hCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCC
Q 038550 35 QNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73 (423)
Q Consensus 35 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 73 (423)
.....++|..+++.+...| ..+|..++.++.+.+.
T Consensus 48 ~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 48 EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGY 82 (94)
T ss_dssp SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCH
Confidence 3455566666666665543 3455555555555443
No 347
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.83 E-value=1.8e+02 Score=22.40 Aligned_cols=45 Identities=16% Similarity=0.046 Sum_probs=29.8
Q ss_pred HHHHHHh---cCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHh
Q 038550 128 ILIVGYS---QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172 (423)
Q Consensus 128 ~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 172 (423)
.+|+++. +..+.+.|+-.+-+|++.|-.|....-..++.+.-..|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455553 45789999999999999887666555555555544333
No 348
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.51 E-value=1.8e+02 Score=24.77 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCChHHHHHHh
Q 038550 96 TNALTDMYAKCGCLNLAQNVF 116 (423)
Q Consensus 96 ~~~l~~~~~~~g~~~~a~~~~ 116 (423)
...++.-|...|+.++|...+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci 34 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCV 34 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHH
Confidence 355677777778888887777
No 349
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.42 E-value=1.3e+02 Score=22.20 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=30.8
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCC
Q 038550 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPTEMHYACMVDLLGRAGL 309 (423)
Q Consensus 250 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 309 (423)
+.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-
T Consensus 24 L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 44556665543 334445555555666677777776665 444444433333444444443
No 350
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.74 E-value=78 Score=25.24 Aligned_cols=161 Identities=12% Similarity=-0.002 Sum_probs=75.6
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHh--ccCcHHHHHHHHHHHHHcC---------CC-C
Q 038550 232 LGYGMLGEVDTAINLFEAMREDGVGYDPV-------SYIAILTACS--HGGLVEKGKKYFDEMQADS---------VK-P 292 (423)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~-~ 292 (423)
...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-...+ +. .
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 33456778777777777777666555432 2234443432 5566666666655543211 10 1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhH----------------HHHHHHHHHhcCChhHHHHHHH---HHH
Q 038550 293 TEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI----------------WGALLGACRIYGNVELGAWAAE---HLF 353 (423)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~---~~~ 353 (423)
+..-.+. +...+..|+.+-+.-+++. +..++... -.+.+...+..|+.+-+..+++ .-.
T Consensus 90 d~~g~t~-L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga 167 (260)
T 3jxi_A 90 YYRGQTA-LHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA 167 (260)
T ss_dssp SEESBCH-HHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred ccCCCCH-HHHHHHcCCHHHHHHHHhC-CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence 1122222 3334556777766656553 32322211 1233444456777766555555 222
Q ss_pred hcCCCCcchHHHHHHHHHhcCC----hhHHHHHHHHHHhccccCC
Q 038550 354 MLKPQHCGYYILLSNMYAEAGK----WDEASKVRELMKSREAKKN 394 (423)
Q Consensus 354 ~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m~~~~~~~~ 394 (423)
..+..+..-.+.|-.+...... .+...++++.+.+.|..++
T Consensus 168 ~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~ 212 (260)
T 3jxi_A 168 DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF 212 (260)
T ss_dssp CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence 2222222223333222222221 2222466667777776554
No 351
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.49 E-value=1.3e+02 Score=21.16 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=32.4
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCh
Q 038550 63 NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL 109 (423)
Q Consensus 63 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 109 (423)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45555556667788888888888776666666655566677776644
No 352
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.07 E-value=1.3e+02 Score=21.66 Aligned_cols=60 Identities=8% Similarity=0.060 Sum_probs=39.6
Q ss_pred hchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCh
Q 038550 48 EMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL 109 (423)
Q Consensus 48 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 109 (423)
.+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 4556677766543 33444555555 778999999998887666766655566777777644
No 353
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=28.90 E-value=2.1e+02 Score=22.37 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=32.4
Q ss_pred hHHHHHHHHh---cCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHh
Q 038550 125 SYNILIVGYS---QTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172 (423)
Q Consensus 125 ~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 172 (423)
.+-.+|+++. +..+.+.|+-.+-+|++.|-.|.-..-..++.+.-..|
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3444555554 45789999999999999987776555555555554444
No 354
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.63 E-value=1.3e+02 Score=22.33 Aligned_cols=60 Identities=7% Similarity=-0.159 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhchhCCCCC--CchhHHHHHH-H-----hhcCCCCccHHHHHHHHHH
Q 038550 26 WNAMVANFAQNRLELKALQLVREMPIHNEFP--NSVTLTNVLP-A-----CARGHFLRPGKEIHARIIR 86 (423)
Q Consensus 26 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 86 (423)
|..-+..| ..|++-+|-++|+..-.....+ +...|.-||+ . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444444 4499999999999887764445 4556777776 3 3457888888888887764
No 355
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=28.02 E-value=1.4e+02 Score=25.31 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=32.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038550 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS 289 (423)
Q Consensus 246 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 289 (423)
+++.+.+.|+.|...++..++..+.+.=.++.+..+++.+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 45556667777777777777777777777788888888887765
No 356
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=27.10 E-value=1.3e+02 Score=24.21 Aligned_cols=50 Identities=12% Similarity=0.077 Sum_probs=24.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHh--ccCcHHHHHHHHHH
Q 038550 235 GMLGEVDTAINLFEAMREDGVGY-------DPVSYIAILTACS--HGGLVEKGKKYFDE 284 (423)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~~~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~ 284 (423)
++.|+.+.+..+++...+.+... +..-.+.|..++. +.|+.+-+..+++.
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 45566666666666555444322 2222334444432 34565555555554
No 357
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.08 E-value=1.4e+02 Score=19.89 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 038550 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGG 273 (423)
Q Consensus 242 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 273 (423)
.|.++.+++...|+.|+..+...++..|..-+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 45666677777777777777777776665544
No 358
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.62 E-value=1e+02 Score=21.78 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=15.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038550 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309 (423)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (423)
+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 24 ~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 24 DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3334444455554444333333333333444444443
No 359
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=26.03 E-value=71 Score=22.86 Aligned_cols=148 Identities=11% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCC
Q 038550 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTS 137 (423)
Q Consensus 62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~ 137 (423)
...+...++.|+.+.+..+++. ....+......-.+.+.. +..|+.+-+..++ +...+|..-++.|..+.....
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Q ss_pred ChhhHHHHHHHHHhcCCCCchhhHH--HHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHH
Q 038550 138 DCSESLSLFSEMRLLGMKHDVVSFM--GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215 (423)
Q Consensus 138 ~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (423)
.++++.+.+.|..++..... +.+...+..|+.+-+.-+++. ..+......-.+-+...+..|+.+-+.-+
T Consensus 81 -----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 152 (156)
T 1bd8_A 81 -----LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGAQDLVDIL 152 (156)
T ss_dssp -----HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT---SCTTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred -----HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc---cCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Q ss_pred hccC
Q 038550 216 FDCL 219 (423)
Q Consensus 216 ~~~~ 219 (423)
++.+
T Consensus 153 l~~~ 156 (156)
T 1bd8_A 153 QGHM 156 (156)
T ss_dssp HTTC
T ss_pred HhhC
No 360
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=25.87 E-value=2.8e+02 Score=23.55 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=51.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-hhhH--HHHHHH----HHhcCChHHHHHHH
Q 038550 245 NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT-EMHY--ACMVDL----LGRAGLMEDAVKLI 317 (423)
Q Consensus 245 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~--~~l~~~----~~~~~~~~~a~~~~ 317 (423)
++++.+.+.|+.|...++..++..+.+.=.++.+..+++.+...|.... ...| .+++.. .....++++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4555666778887778888888888887788889999998888764332 1222 122222 23357788888888
Q ss_pred hhCC
Q 038550 318 KNLP 321 (423)
Q Consensus 318 ~~~~ 321 (423)
+.++
T Consensus 310 ~~~p 313 (345)
T 2qfz_A 310 QNLP 313 (345)
T ss_dssp TSCS
T ss_pred HcCC
Confidence 8774
No 361
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.47 E-value=1.2e+02 Score=21.62 Aligned_cols=42 Identities=7% Similarity=0.157 Sum_probs=20.4
Q ss_pred HHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 038550 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170 (423)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 170 (423)
++..+...+..-.|.++++.+.+.+...+..|....+..+..
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e 60 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLAD 60 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 344444444455566666666555444444444444444333
No 362
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=25.15 E-value=95 Score=19.67 Aligned_cols=30 Identities=17% Similarity=0.044 Sum_probs=13.5
Q ss_pred CCCCchhHHHHHHHhhcCCCCccHHHHHHH
Q 038550 54 EFPNSVTLTNVLPACARGHFLRPGKEIHAR 83 (423)
Q Consensus 54 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 83 (423)
++|+..||+-+...+-+..-...+..+.++
T Consensus 32 LPpgVnTW~qI~el~qkk~i~~~~m~iik~ 61 (81)
T 2ko4_A 32 IPPNINTWQQVTALAQQKLLTPQDMEAAKE 61 (81)
T ss_dssp CCTTTCBHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345555555555444433333344444333
No 363
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=24.42 E-value=2.3e+02 Score=21.30 Aligned_cols=16 Identities=19% Similarity=-0.024 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHHhccC
Q 038550 258 DPVSYIAILTACSHGG 273 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~ 273 (423)
+...-...+.++...|
T Consensus 151 ~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 151 DGWVRQSAADALGEIG 166 (201)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333344444443
No 364
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.55 E-value=2.3e+02 Score=21.03 Aligned_cols=53 Identities=11% Similarity=-0.071 Sum_probs=33.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HhccCcHHHHHHHHHHHHHc
Q 038550 236 MLGEVDTAINLFEAMREDGVGY--DPVSYIAILT-A-----CSHGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~~ 288 (423)
..|++-+|.++|+..=.....+ +...|..||. . ..+.|+...|..++.+....
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3477777777777766554444 3445555555 2 23457777777777776654
No 365
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=23.44 E-value=3.6e+02 Score=23.24 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCC
Q 038550 197 NSILDFYTRSGRIDLANKIFDCLPVK 222 (423)
Q Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 222 (423)
..++.-|...|+.++|...++++..|
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p 41 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAP 41 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCc
Confidence 34555566666666666666666554
No 366
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=23.35 E-value=1.1e+02 Score=17.48 Aligned_cols=10 Identities=10% Similarity=-0.114 Sum_probs=3.8
Q ss_pred cCChHHHHHH
Q 038550 307 AGLMEDAVKL 316 (423)
Q Consensus 307 ~~~~~~a~~~ 316 (423)
.|++..|++.
T Consensus 37 ~gDI~~aLD~ 46 (52)
T 1q02_A 37 NYDIGAALDT 46 (52)
T ss_dssp TTCHHHHHHH
T ss_pred cCCHHHHHHH
Confidence 3333333333
No 367
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.14 E-value=1.6e+02 Score=24.89 Aligned_cols=142 Identities=13% Similarity=0.045 Sum_probs=67.5
Q ss_pred HHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHH
Q 038550 202 FYTRSGRIDLANKIFDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP-VSYIAILTACSHGGLVEK 277 (423)
Q Consensus 202 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 277 (423)
..+..|+.+.+..+++.-.. .+..-++.| ...+..|+.+-+..+ .+.|..++. .-.+. +...+..|+.+-
T Consensus 26 ~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~-L~~A~~~g~~~~ 99 (364)
T 3ljn_A 26 VAARKGQTDEVRRLIETGVSPTIQNRFGCTAL-HLACKFGCVDTAKYL----ASVGEVHSLWHGQKP-IHLAVMANKTDL 99 (364)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHCCHHHHHHH----HHHCCCCCCBTTBCH-HHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCccccCCCCCcHH-HHHHHcCCHHHHHHH----HHCCCCccccCCCCH-HHHHHHcCCHHH
Confidence 33445555555555543221 122223333 333456776544444 444443333 22223 333456677777
Q ss_pred HHHHHHHHHHcCCCCCh--------------------hhHHHHHHHHHhcC--ChHHHHHHHhhCCCCCC---HhHHHHH
Q 038550 278 GKKYFDEMQADSVKPTE--------------------MHYACMVDLLGRAG--LMEDAVKLIKNLPVEPD---ANIWGAL 332 (423)
Q Consensus 278 a~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~---~~~~~~l 332 (423)
+..+++.....|..++. .-.+.| ...+..| +.+-+..+++. +..++ ..-. +.
T Consensus 100 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d~~g~-t~ 176 (364)
T 3ljn_A 100 VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTAL-HWCVGLGPEYLEMIKILVQL-GASPTAKDKADE-TP 176 (364)
T ss_dssp HHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHH-HHHHHSCGGGHHHHHHHHHH-TCCTTCCCTTSC-CH
T ss_pred HHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHH-HHHHHcCCchHHHHHHHHHc-CCCCcccCCCCC-CH
Confidence 77777665444444332 112233 3345566 56555555554 33332 2122 23
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 038550 333 LGACRIYGNVELGAWAAEHL 352 (423)
Q Consensus 333 ~~~~~~~~~~~~a~~~~~~~ 352 (423)
+...+..|+.+-+..+++..
T Consensus 177 L~~A~~~g~~~~v~~Ll~~g 196 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDTV 196 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHhcc
Confidence 34445678877666666553
No 368
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=22.85 E-value=5.7e+02 Score=25.39 Aligned_cols=49 Identities=10% Similarity=-0.067 Sum_probs=24.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
+.|..++-..+++...... +..--..++.+++...+.....++++....
T Consensus 738 ~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 738 AQGGQDQWDFAWGQLQQAQ---LVNEADKLRSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHSCHHHHHHHHHHHHHCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHccC---CHHHHHHHHHHhCCCCCHHHHHHHHHHHhC
Confidence 3444444444444444431 233334555666556666655555555543
No 369
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.63 E-value=3.5e+02 Score=22.84 Aligned_cols=127 Identities=10% Similarity=-0.016 Sum_probs=71.2
Q ss_pred HHhCCChHHHHHHHhhchhCCC------CCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 038550 33 FAQNRLELKALQLVREMPIHNE------FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC 106 (423)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~~------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 106 (423)
+...|++++|++.|+.+...=+ +-+......++..|. .+-.|..+ ++.+..++.+....+.-+.+|...
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icr---EYilal~i--El~Rr~l~~~~~kR~lELAAYFT~ 198 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAR---EYILGLSI--ELERRSLKEGNTVRMLELAAYFTK 198 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHH---HHHHHHHH--HHHHHTCCTTCHHHHHHHHHHGGG
T ss_pred HHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHhcCcccHHHHHHHHHHhcc
Confidence 4678999999999998765310 001112222333321 12222222 222333333434455555566555
Q ss_pred CChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHH
Q 038550 107 GCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186 (423)
Q Consensus 107 g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 186 (423)
-+++-....+ +...-+....+.+++..|..+-+++++.+..++ ..++|.+++....+
T Consensus 199 c~LQp~H~~L--------aLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~---------------~a~qArkil~~ce~ 255 (325)
T 3mv2_A 199 AKLSPIHRTN--------ALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP---------------RAEQARKIKNKADS 255 (325)
T ss_dssp SCCCHHHHHH--------HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH---------------HHHHHHHHHHHHHT
T ss_pred CCCcHHHHHH--------HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHHHhc
Confidence 5554444443 556667888899999999999999998653222 33556666666554
Q ss_pred h
Q 038550 187 K 187 (423)
Q Consensus 187 ~ 187 (423)
.
T Consensus 256 ~ 256 (325)
T 3mv2_A 256 M 256 (325)
T ss_dssp S
T ss_pred C
Confidence 3
No 370
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=22.06 E-value=3.5e+02 Score=22.68 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH----HHhcCChHHHHHHHhhC
Q 038550 245 NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL----LGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 245 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~ 320 (423)
++++.+.+.|+.|...++..++..+.+.=.++.+..+++.+...|...-..+..+++.. ..+..++++...+++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 45666677788887778888888887777788888888888887643111111122211 22345777777777764
No 371
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.77 E-value=3.6e+02 Score=22.64 Aligned_cols=120 Identities=8% Similarity=0.074 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHhcC-----CCCchhhHHHH---HHHHHhHhhHHhhhHHHHHHHHhccCcchHHHH
Q 038550 126 YNILIVGYSQTSDCSESLSLFSEMRLLG-----MKHDVVSFMGA---ISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197 (423)
Q Consensus 126 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 197 (423)
++.++..+.-.-+-+.|..++..+...- ..|+....... +..+.+..+ -+++..+.+.|+.|...++.
T Consensus 152 m~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~ 227 (331)
T 3qye_A 152 LSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAP 227 (331)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHH
Confidence 3444444433345566777777665431 22332222111 222222222 24566667778888777777
Q ss_pred HHHHHHHhcCCHHHHHHHhccCC--CCChhhHHH--HHH----HHhccCCHHHHHHHHHH
Q 038550 198 SILDFYTRSGRIDLANKIFDCLP--VKDSASWNT--LIL----GYGMLGEVDTAINLFEA 249 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~--li~----~~~~~g~~~~a~~~~~~ 249 (423)
.++..|.+.=.++.+..+|+.+. .+....+-+ ++. ......++++....++.
T Consensus 228 W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 228 WFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 78888877777888888887664 222222211 111 12233467776666665
No 372
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=21.25 E-value=94 Score=15.73 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=16.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 038550 365 LLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 365 ~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
..+..|.+.|..++|..+-.+|+
T Consensus 7 QW~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 7 QWAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 45667778888888887766665
No 373
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=21.24 E-value=2.2e+02 Score=27.02 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=44.3
Q ss_pred HHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038550 311 EDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGK 375 (423)
Q Consensus 311 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 375 (423)
+.|.++.+.|| .........+.....|++.-|.++.+.+...+|.+..+....+.+|.+.|.
T Consensus 437 ~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 437 DSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34455555553 122233334556788999999999999999999999888888888766653
No 374
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.13 E-value=1.2e+02 Score=23.80 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=16.2
Q ss_pred HHHHHHhcCChHHHHHHHhhC
Q 038550 300 MVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~ 320 (423)
.+-.|.+.|.+++|.+++++.
T Consensus 120 AV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHH
Confidence 345677888888888888876
No 375
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=21.12 E-value=3.6e+02 Score=22.36 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHcCCCCchHH--HHHHHHHHHhcCChHHHHHHhchh-----cCCcchHHHHHHHHhcCCChhhHHHHHHH
Q 038550 76 PGKEIHARIIRKGLNFDLFL--TNALTDMYAKCGCLNLAQNVFNIS-----FRDEVSYNILIVGYSQTSDCSESLSLFSE 148 (423)
Q Consensus 76 ~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 148 (423)
....+.+.+++.|..++... -.+.+...+..|..+.+..++... ..|..-++.|..+ ++.|+. ++.+.
T Consensus 217 ~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~----~iv~~ 291 (337)
T 4g8k_A 217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLK----KIAEL 291 (337)
T ss_dssp THHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCH----HHHHH
T ss_pred cHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCH----HHHHH
Confidence 33445555666765554321 112233445667777666665221 1122222233332 344543 34455
Q ss_pred HHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc
Q 038550 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192 (423)
Q Consensus 149 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 192 (423)
+++.|..++..+ .+...++.|+.+ +.+.+++.|-.++
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 566676666544 222233344433 3444555555444
No 376
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.79 E-value=1.2e+02 Score=22.77 Aligned_cols=46 Identities=11% Similarity=0.018 Sum_probs=21.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 271 (423)
..++.++..++...-.++++..+.+....|. .+..+|..-+..+++
T Consensus 112 ~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 112 DGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELAR 157 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3345555555555555555555555555443 244444444444433
No 377
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=20.71 E-value=2.9e+02 Score=21.21 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=12.5
Q ss_pred HHHhccCcHHHHHHHHHHHHH
Q 038550 267 TACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~ 287 (423)
......|+...+.++.+.+.+
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 344556666666666666554
No 378
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.60 E-value=1.9e+02 Score=20.16 Aligned_cols=42 Identities=12% Similarity=-0.042 Sum_probs=24.3
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHH
Q 038550 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186 (423)
Q Consensus 145 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 186 (423)
+|+.+....+.|+...-..-+..+...++++.|..+.-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555544444444444455667777777777766654
Done!