Query 038551
Match_columns 366
No_of_seqs 172 out of 2680
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 12:12:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 3.2E-23 6.9E-28 215.7 17.9 182 4-202 60-249 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.5E-22 3.3E-27 210.6 19.8 152 13-166 94-250 (968)
3 KOG4194 Membrane glycoprotein 99.9 2E-24 4.3E-29 197.6 3.5 299 16-330 82-428 (873)
4 KOG4194 Membrane glycoprotein 99.9 3.2E-23 6.9E-28 189.8 4.8 220 15-256 55-284 (873)
5 KOG0444 Cytoskeletal regulator 99.8 5.8E-22 1.3E-26 183.0 -4.1 283 14-331 34-352 (1255)
6 KOG4658 Apoptotic ATPase [Sign 99.8 1.2E-19 2.5E-24 182.0 9.6 240 1-255 490-731 (889)
7 PLN03210 Resistant to P. syrin 99.8 6E-18 1.3E-22 177.4 17.5 202 35-257 590-819 (1153)
8 KOG0444 Cytoskeletal regulator 99.8 1.3E-20 2.8E-25 174.3 -3.7 282 16-331 11-304 (1255)
9 PLN03210 Resistant to P. syrin 99.7 6.9E-17 1.5E-21 169.5 20.3 282 12-325 589-911 (1153)
10 KOG0472 Leucine-rich repeat pr 99.7 3.1E-20 6.7E-25 163.5 -8.3 151 33-203 159-311 (565)
11 KOG4237 Extracellular matrix p 99.7 4.2E-18 9E-23 149.8 -1.7 322 6-346 40-373 (498)
12 PRK15387 E3 ubiquitin-protein 99.7 8.8E-16 1.9E-20 151.3 12.8 257 7-332 196-459 (788)
13 KOG0472 Leucine-rich repeat pr 99.6 2.7E-19 5.8E-24 157.6 -11.7 259 15-313 48-308 (565)
14 KOG0617 Ras suppressor protein 99.6 3.3E-18 7E-23 134.3 -4.9 165 24-206 23-190 (264)
15 KOG0618 Serine/threonine phosp 99.6 9.3E-17 2E-21 154.8 -0.2 267 16-328 203-510 (1081)
16 KOG0617 Ras suppressor protein 99.6 2.3E-17 5E-22 129.6 -4.5 149 14-165 35-186 (264)
17 PRK15370 E3 ubiquitin-protein 99.6 1.4E-14 3E-19 143.5 10.0 261 8-323 174-438 (754)
18 KOG0618 Serine/threonine phosp 99.5 9.6E-16 2.1E-20 148.0 0.2 120 16-137 25-147 (1081)
19 PRK15370 E3 ubiquitin-protein 99.5 1.2E-13 2.7E-18 136.9 11.1 236 34-331 178-428 (754)
20 PRK15387 E3 ubiquitin-protein 99.5 4.7E-13 1E-17 132.3 12.5 234 13-313 223-456 (788)
21 KOG4237 Extracellular matrix p 99.4 2.5E-14 5.4E-19 126.3 1.5 255 13-281 68-354 (498)
22 cd00116 LRR_RI Leucine-rich re 99.4 1.2E-13 2.6E-18 125.9 5.3 161 32-202 21-206 (319)
23 PF14580 LRR_9: Leucine-rich r 99.3 6.6E-12 1.4E-16 102.5 5.6 137 19-159 4-147 (175)
24 KOG1909 Ran GTPase-activating 99.2 4.8E-12 1E-16 110.4 3.2 228 53-331 27-311 (382)
25 cd00116 LRR_RI Leucine-rich re 99.2 2.3E-11 5E-16 110.8 7.8 230 14-256 25-293 (319)
26 KOG4658 Apoptotic ATPase [Sign 99.2 3.7E-11 8E-16 121.3 8.5 324 12-358 523-883 (889)
27 PF14580 LRR_9: Leucine-rich r 99.1 5.8E-11 1.2E-15 96.9 5.5 124 12-136 19-149 (175)
28 KOG3207 Beta-tubulin folding c 99.1 4.8E-11 1E-15 107.1 2.1 112 76-200 117-233 (505)
29 KOG3207 Beta-tubulin folding c 99.0 5.8E-11 1.3E-15 106.6 -0.5 162 30-204 117-286 (505)
30 COG4886 Leucine-rich repeat (L 98.9 1.3E-09 2.9E-14 102.4 4.2 192 39-255 98-291 (394)
31 KOG4341 F-box protein containi 98.8 3.2E-10 7E-15 101.3 -1.4 27 304-330 403-438 (483)
32 COG4886 Leucine-rich repeat (L 98.8 2.8E-09 6.2E-14 100.1 4.8 178 17-212 98-278 (394)
33 KOG0532 Leucine-rich repeat (L 98.8 1.3E-10 2.8E-15 107.6 -4.9 168 18-205 81-250 (722)
34 KOG1259 Nischarin, modulator o 98.8 1.7E-09 3.8E-14 92.9 1.4 134 102-257 282-415 (490)
35 KOG1259 Nischarin, modulator o 98.7 1.7E-09 3.8E-14 92.9 0.2 117 80-215 284-400 (490)
36 KOG0532 Leucine-rich repeat (L 98.7 1.7E-09 3.6E-14 100.4 -0.5 141 21-166 107-248 (722)
37 KOG4341 F-box protein containi 98.7 2.9E-09 6.3E-14 95.3 -0.4 270 35-325 139-459 (483)
38 KOG1909 Ran GTPase-activating 98.7 5E-08 1.1E-12 85.6 7.1 215 28-254 24-283 (382)
39 PF13855 LRR_8: Leucine rich r 98.6 2.5E-08 5.4E-13 66.9 3.5 58 57-115 2-60 (61)
40 KOG2982 Uncharacterized conser 98.6 2.1E-08 4.5E-13 86.2 3.3 232 34-281 45-287 (418)
41 PF13855 LRR_8: Leucine rich r 98.6 4.5E-08 9.8E-13 65.7 4.2 57 34-90 1-59 (61)
42 COG5238 RNA1 Ran GTPase-activa 98.6 2.6E-08 5.5E-13 84.7 2.6 231 54-331 28-316 (388)
43 PLN03150 hypothetical protein; 98.5 3.5E-07 7.7E-12 90.5 9.4 84 82-166 420-504 (623)
44 KOG0531 Protein phosphatase 1, 98.5 1.4E-08 3.1E-13 95.8 -1.3 127 33-165 71-199 (414)
45 PLN03150 hypothetical protein; 98.5 6.5E-07 1.4E-11 88.7 9.2 106 57-164 419-527 (623)
46 KOG2120 SCF ubiquitin ligase, 98.5 1.4E-08 3.1E-13 87.3 -2.2 179 81-281 186-371 (419)
47 KOG2120 SCF ubiquitin ligase, 98.4 2.5E-08 5.4E-13 85.8 -1.8 176 104-313 185-374 (419)
48 KOG0531 Protein phosphatase 1, 98.4 3.3E-08 7.2E-13 93.3 -1.3 140 19-165 79-221 (414)
49 KOG1859 Leucine-rich repeat pr 98.3 1.3E-08 2.7E-13 97.2 -5.7 29 20-48 95-123 (1096)
50 KOG2982 Uncharacterized conser 98.0 3.1E-06 6.7E-11 73.2 2.5 163 150-334 69-265 (418)
51 KOG4579 Leucine-rich repeat (L 98.0 5.7E-07 1.2E-11 68.8 -1.9 109 36-146 29-141 (177)
52 PF12799 LRR_4: Leucine Rich r 98.0 1.2E-05 2.5E-10 49.7 4.1 13 59-71 4-16 (44)
53 KOG1859 Leucine-rich repeat pr 98.0 2.4E-07 5.3E-12 88.7 -5.5 127 57-202 165-292 (1096)
54 KOG1644 U2-associated snRNP A' 97.9 1.9E-05 4.1E-10 64.6 5.8 102 35-137 43-150 (233)
55 PF12799 LRR_4: Leucine Rich r 97.9 2.7E-05 5.9E-10 48.0 4.2 40 80-120 1-40 (44)
56 KOG3665 ZYG-1-like serine/thre 97.9 9E-06 2E-10 80.7 3.1 129 34-166 122-264 (699)
57 KOG4579 Leucine-rich repeat (L 97.8 3.3E-06 7.1E-11 64.8 -1.1 106 15-122 30-141 (177)
58 KOG1644 U2-associated snRNP A' 97.7 4.9E-05 1.1E-09 62.3 5.1 98 15-115 45-151 (233)
59 COG5238 RNA1 Ran GTPase-activa 97.7 5.5E-05 1.2E-09 64.8 4.6 138 28-166 86-256 (388)
60 PRK15386 type III secretion pr 97.7 0.0002 4.3E-09 66.1 8.4 82 30-122 48-133 (426)
61 PRK15386 type III secretion pr 97.5 0.00028 6.1E-09 65.1 7.0 88 54-160 50-140 (426)
62 KOG3665 ZYG-1-like serine/thre 97.5 9.4E-05 2E-09 73.6 4.1 108 127-251 122-230 (699)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00078 1.7E-08 52.3 7.9 117 30-154 8-128 (129)
64 KOG2123 Uncharacterized conser 97.3 1.1E-05 2.4E-10 69.1 -4.4 98 33-133 18-123 (388)
65 KOG2123 Uncharacterized conser 97.1 3.3E-05 7.2E-10 66.3 -3.3 101 54-158 17-123 (388)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00027 5.7E-09 60.4 1.4 81 55-137 42-126 (260)
67 KOG1947 Leucine rich repeat pr 97.0 0.00032 7E-09 67.5 1.6 110 79-200 187-306 (482)
68 PF13306 LRR_5: Leucine rich r 96.8 0.0058 1.3E-07 47.3 7.4 102 53-161 9-112 (129)
69 KOG1947 Leucine rich repeat pr 96.5 0.00093 2E-08 64.3 1.3 133 53-197 185-329 (482)
70 KOG2739 Leucine-rich acidic nu 96.3 0.0032 7E-08 53.9 3.1 104 32-137 41-153 (260)
71 PF00560 LRR_1: Leucine Rich R 95.5 0.0073 1.6E-07 30.9 1.1 17 106-122 2-18 (22)
72 PF00560 LRR_1: Leucine Rich R 93.9 0.027 5.9E-07 28.7 0.8 17 58-74 2-18 (22)
73 PF13504 LRR_7: Leucine rich r 93.8 0.042 9.1E-07 26.1 1.3 13 106-118 3-15 (17)
74 KOG3864 Uncharacterized conser 93.4 0.035 7.5E-07 45.9 1.1 85 153-251 102-186 (221)
75 smart00370 LRR Leucine-rich re 91.7 0.17 3.8E-06 26.8 2.1 21 56-76 2-22 (26)
76 smart00369 LRR_TYP Leucine-ric 91.7 0.17 3.8E-06 26.8 2.1 21 56-76 2-22 (26)
77 KOG3864 Uncharacterized conser 89.8 0.055 1.2E-06 44.8 -1.4 35 127-161 151-185 (221)
78 KOG4308 LRR-containing protein 85.8 0.019 4.1E-07 55.0 -7.4 162 30-202 111-303 (478)
79 KOG0473 Leucine-rich repeat pr 82.7 0.033 7.2E-07 47.1 -6.2 83 30-114 38-121 (326)
80 KOG0473 Leucine-rich repeat pr 82.4 0.027 5.8E-07 47.7 -6.9 84 53-138 39-122 (326)
81 KOG4308 LRR-containing protein 70.2 0.12 2.6E-06 49.6 -7.3 13 239-251 288-300 (478)
82 PF13516 LRR_6: Leucine Rich r 68.4 2.9 6.3E-05 21.4 1.0 14 152-165 2-15 (24)
83 smart00364 LRR_BAC Leucine-ric 67.7 3.6 7.7E-05 21.9 1.2 17 105-121 3-19 (26)
84 smart00367 LRR_CC Leucine-rich 67.4 3.8 8.3E-05 21.5 1.3 16 127-142 2-17 (26)
85 smart00365 LRR_SD22 Leucine-ri 64.3 6 0.00013 21.0 1.7 13 105-117 3-15 (26)
86 smart00368 LRR_RI Leucine rich 49.1 14 0.00029 19.9 1.5 13 105-117 3-15 (28)
87 KOG3763 mRNA export factor TAP 47.2 10 0.00022 36.6 1.4 81 53-133 215-307 (585)
88 KOG3763 mRNA export factor TAP 30.5 26 0.00057 34.0 1.3 68 77-144 215-287 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=3.2e-23 Score=215.67 Aligned_cols=182 Identities=22% Similarity=0.260 Sum_probs=127.3
Q ss_pred eeeeccC-cCCccEEEecCCCcccC--CCCCCCCcccEEEcccCCccc-cCCC--CCCCCccEEEccCCCCc-cccchhh
Q 038551 4 RIASTIN-KEKENFLVLAGVGLTEA--PSIGMWKETTRMSLMQNAIQN-LTEI--PTCPRLRTLFLPSNHLG-TVSNNFF 76 (366)
Q Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~L~~L~l~~~~~~-~i~~~~~ 76 (366)
|-++.|. ......+++.++++... +.+..+++|+.|++++|.+.. +|.. ..+.+|++|++++|.+. .+|.
T Consensus 60 w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--- 136 (968)
T PLN00113 60 WQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--- 136 (968)
T ss_pred CcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---
Confidence 4444443 24556667777776655 457788999999999998874 6655 47888888888888775 3443
Q ss_pred cCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccc-cccccccCCCCCCEEEcccccccCccChhhhcCCcCCc
Q 038551 77 HSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGIT-TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLR 155 (366)
Q Consensus 77 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 155 (366)
..+++|++|++++|...+.+|..++++++|++|++++|.+. .+|..+.++++|++|++++|...+.+|.. +.++++|+
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~ 215 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLK 215 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCcc
Confidence 34677888888877555567777777788888888777665 56666777777888888776666666665 67777777
Q ss_pred EEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551 156 ALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG 202 (366)
Q Consensus 156 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 202 (366)
+|++.+|.+.+ ..+..+..+++|+.|++++|...
T Consensus 216 ~L~L~~n~l~~-------------~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 216 WIYLGYNNLSG-------------EIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred EEECcCCccCC-------------cCChhHhcCCCCCEEECcCceec
Confidence 77777777765 44555666666666666666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.5e-22 Score=210.61 Aligned_cols=152 Identities=26% Similarity=0.317 Sum_probs=95.3
Q ss_pred CccEEEecCCCcc-cCCC--CCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCc-cccchhhcCCCCCCEEEcc
Q 038551 13 KENFLVLAGVGLT-EAPS--IGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLG-TVSNNFFHSMASLRVLILS 88 (366)
Q Consensus 13 ~~~~~~~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~i~~~~~~~l~~L~~L~l~ 88 (366)
..+.+++.++.+. .+|. +.++++|++|++++|.+.+..+...+++|++|++++|.+. .+|.. ++.+++|++|+++
T Consensus 94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~ 172 (968)
T PLN00113 94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLG 172 (968)
T ss_pred CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECc
Confidence 4556666666665 3432 3366777777777777765333345667777777777664 34444 6667777777777
Q ss_pred CCCCCCCcchhhcCCCCCcEEEccccccc-cccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551 89 YNRSLENLPLGIFNLVSLQHLDISWTGIT-TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 89 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
+|...+.+|..++++++|++|++++|.+. .+|..++++++|++|++++|+..+.+|.. +.++++|++|++.+|.+.+
T Consensus 173 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred cCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceecc
Confidence 76444566666666777777777766654 45666666666666666665555555554 5666666666666666554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=2e-24 Score=197.60 Aligned_cols=299 Identities=18% Similarity=0.196 Sum_probs=179.3
Q ss_pred EEEecCCCcccC--CCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551 16 FLVLAGVGLTEA--PSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS 92 (366)
Q Consensus 16 ~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 92 (366)
.+++.++.+.++ ..+.++++|+.+++.+|.++.+|.. ....+|+.|++.+|.|+++....+..++.|+.|||+.| .
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~ 160 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-L 160 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-h
Confidence 356677777766 3456777788888877777777776 55566777777777777666655666777777777777 6
Q ss_pred CCCcc-hhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccc--c
Q 038551 93 LENLP-LGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVE--L 168 (366)
Q Consensus 93 ~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~ 168 (366)
+..+| ..+..-.++++|+|++|.++.+..+ +.++.+|-.|.+++ |.++.+|...|.+++.|+.|++.+|.+.-. .
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 66555 2344445677777777777665443 56666666666666 566666655566666666666666655431 1
Q ss_pred cccccccCCch---------hhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhcc
Q 038551 169 EADSILFGDSE---------VLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFAS 239 (366)
Q Consensus 169 ~~~~~~~~~~~---------~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~ 239 (366)
.|.+.++.+.- -.-..+..+.++++|+++.|....+..- -+..+..|+...|+.+.+..+... ++.-
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g-~lfgLt~L~~L~lS~NaI~rih~d---~Wsf 315 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG-WLFGLTSLEQLDLSYNAIQRIHID---SWSF 315 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc-cccccchhhhhccchhhhheeecc---hhhh
Confidence 22222111100 1122344566677777777766654321 144455533344444443333333 3566
Q ss_pred CCcCcEEEeccCccceEeccccccccccccCCCCCcceeeee--------------cccceeEEeeccCc----------
Q 038551 240 LRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK--------------ILKIEARDMACTCS---------- 295 (366)
Q Consensus 240 ~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~--------------l~~l~~L~l~~~c~---------- 295 (366)
+++|++|+++.|.++.++...+ ..+..|+.|.++ +.+++.|+++ ...
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf--------~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr-~N~ls~~IEDaa~ 386 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSF--------RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR-SNELSWCIEDAAV 386 (873)
T ss_pred cccceeEeccccccccCChhHH--------HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc-CCeEEEEEecchh
Confidence 7777777777777777765444 335556666655 3344444444 221
Q ss_pred cccccccccceEEeecCc--------ccCCcccccccCCCCCC
Q 038551 296 QYQACPRGLTKFEEHPLK--------RLECAELKELPLDCNHG 330 (366)
Q Consensus 296 ~l~~~~~~L~~L~l~~~~--------~~~~~~L~~L~l~~n~~ 330 (366)
.+..+|. |+.|++.||. ..+++.|+.|++.+|.+
T Consensus 387 ~f~gl~~-LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 387 AFNGLPS-LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhccchh-hhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 1112677 8888888887 56777888888888765
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=3.2e-23 Score=189.79 Aligned_cols=220 Identities=20% Similarity=0.215 Sum_probs=158.9
Q ss_pred cEEEecCCCcccCC--CCCC--CCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551 15 NFLVLAGVGLTEAP--SIGM--WKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS 88 (366)
Q Consensus 15 ~~~~~~~~~~~~~~--~~~~--~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~ 88 (366)
..+.|.+.++..+. .+.+ .+..+.|++++|.+..+... .++++|+.+++..|.+..||.. .+...+|+.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f-~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF-GHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc-cccccceeEEeee
Confidence 34566666665541 1111 24567799999999986555 8999999999999999999985 5667779999999
Q ss_pred CCCCCCCc-chhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551 89 YNRSLENL-PLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 89 ~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
+| .+..+ .+.+..++.|+.|||+.|.++++|.. +..-.++++|++++ |.++.+..+.|..+.+|-.|.+++|.++.
T Consensus 134 ~N-~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 134 HN-LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred cc-ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccCcccc
Confidence 99 66655 46688899999999999999988864 55568899999999 78888887778999999999999999986
Q ss_pred cccccccccCCchhhhhhhhcCcccceeeeccccchhhH--hHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCc
Q 038551 167 ELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQ--RLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLR 244 (366)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~ 244 (366)
-....+.++++|+.|++..|.+.... .+..+.++++|++.+-+++ .+.+.. |-.+.+++
T Consensus 212 -------------Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~---kL~DG~---Fy~l~kme 272 (873)
T KOG4194|consen 212 -------------LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS---KLDDGA---FYGLEKME 272 (873)
T ss_pred -------------cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc---cccCcc---eeeecccc
Confidence 55677788999999999988776432 2222333444333333332 233332 44455555
Q ss_pred EEEeccCccceE
Q 038551 245 TLQLYFNDLEEL 256 (366)
Q Consensus 245 ~L~l~~~~l~~l 256 (366)
+|+++.|++..+
T Consensus 273 ~l~L~~N~l~~v 284 (873)
T KOG4194|consen 273 HLNLETNRLQAV 284 (873)
T ss_pred eeecccchhhhh
Confidence 555555544443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=5.8e-22 Score=183.05 Aligned_cols=283 Identities=23% Similarity=0.335 Sum_probs=193.2
Q ss_pred ccEEEecCCCcccCC-CCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCc--cccchhhcCCCCCCEEEccC
Q 038551 14 ENFLVLAGVGLTEAP-SIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLG--TVSNNFFHSMASLRVLILSY 89 (366)
Q Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~--~i~~~~~~~l~~L~~L~l~~ 89 (366)
.+++.+...++..+| .++.+.+|++|.+.+|++..+... +.++.||.+++..|+++ .||+++| .+..|.+|||++
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecch
Confidence 457777777888885 578888899999988888886555 78888888888888774 6888844 688899999999
Q ss_pred CCCCCCcchhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccc
Q 038551 90 NRSLENLPLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVEL 168 (366)
Q Consensus 90 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 168 (366)
| .+++.|..+.+.+++.+|+|++|++.++|.. +-++..|-.||+++ +.+..+|.. +..+..|+.|.+++|.+.-
T Consensus 113 N-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~h-- 187 (1255)
T KOG0444|consen 113 N-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSNNPLNH-- 187 (1255)
T ss_pred h-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCCChhhH--
Confidence 8 7888888888888888899999888888876 57888888888888 788888887 8888888888888888764
Q ss_pred cccccccCCchhhhhhhhcCcccceeeeccccchh--hH-hHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcE
Q 038551 169 EADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA--LQ-RLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRT 245 (366)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~-~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~ 245 (366)
.....+.+++.|+.|.+++.+-+. +| ++..+.+++ .++++..+ +...+ ..+..+++|+.
T Consensus 188 -----------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~-----dvDlS~N~-Lp~vP-ecly~l~~Lrr 249 (1255)
T KOG0444|consen 188 -----------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR-----DVDLSENN-LPIVP-ECLYKLRNLRR 249 (1255)
T ss_pred -----------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhh-----hccccccC-CCcch-HHHhhhhhhhe
Confidence 666777777777777777654432 22 222233322 24443321 11111 22556677777
Q ss_pred EEeccCccceEeccccccccccccCCCCCcceeeee-------------cccc-------eeEEeeccCc-ccccccccc
Q 038551 246 LQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK-------------ILKI-------EARDMACTCS-QYQACPRGL 304 (366)
Q Consensus 246 L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~-------------l~~l-------~~L~l~~~c~-~l~~~~~~L 304 (366)
|++++|.++++.... ....+|+.|+++ ++.+ ..|+.. +.+ .+..+.+ |
T Consensus 250 LNLS~N~iteL~~~~---------~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~Fe-GiPSGIGKL~~-L 318 (1255)
T KOG0444|consen 250 LNLSGNKITELNMTE---------GEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFE-GIPSGIGKLIQ-L 318 (1255)
T ss_pred eccCcCceeeeeccH---------HHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccccc-CCccchhhhhh-h
Confidence 777777777665433 224455555554 1111 223333 332 2333445 6
Q ss_pred ceEEeecCc-------ccCCcccccccCCCCCCC
Q 038551 305 TKFEEHPLK-------RLECAELKELPLDCNHGL 331 (366)
Q Consensus 305 ~~L~l~~~~-------~~~~~~L~~L~l~~n~~~ 331 (366)
+++...+|. +..|+.|+.|.++.|++.
T Consensus 319 evf~aanN~LElVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 319 EVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred HHHHhhccccccCchhhhhhHHHHHhccccccee
Confidence 666666665 667888888888888754
No 6
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.80 E-value=1.2e-19 Score=181.96 Aligned_cols=240 Identities=41% Similarity=0.544 Sum_probs=187.9
Q ss_pred CceeeeeccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCC--CccccchhhcC
Q 038551 1 MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNH--LGTVSNNFFHS 78 (366)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~--~~~i~~~~~~~ 78 (366)
||+|++++.-++++..++-.+.++.++|....+...+++++.++.+..++....+++|++|-+..|. +..++..+|..
T Consensus 490 ~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~ 569 (889)
T KOG4658|consen 490 MALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRS 569 (889)
T ss_pred HHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhh
Confidence 7899999888888888888888888899999999999999999999998888888899999999995 77888888999
Q ss_pred CCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEE
Q 038551 79 MASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALR 158 (366)
Q Consensus 79 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 158 (366)
++.|++||+++|...+.+|+.++++.+||||+++++.+..+|.+++++++|.+|++..+.....++.. ...+++|++|.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLR 648 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccch-hhhcccccEEE
Confidence 99999999999988899999999999999999999999999999999999999999987666666443 66799999999
Q ss_pred eecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhc
Q 038551 159 MFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFA 238 (366)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~ 238 (366)
+....... +......+..+++|+.+.........+..+.....+.. ....+.+..+.. .....++.
T Consensus 649 l~~s~~~~-----------~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~-~~~~l~~~~~~~--~~~~~~~~ 714 (889)
T KOG4658|consen 649 LPRSALSN-----------DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRS-LLQSLSIEGCSK--RTLISSLG 714 (889)
T ss_pred eecccccc-----------chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHH-HhHhhhhccccc--ceeecccc
Confidence 98776332 34666777788888888876544422233323333332 222333222111 22223477
Q ss_pred cCCcCcEEEeccCccce
Q 038551 239 SLRHLRTLQLYFNDLEE 255 (366)
Q Consensus 239 ~~~~L~~L~l~~~~l~~ 255 (366)
.+.+|+.|.+.+|...+
T Consensus 715 ~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 715 SLGNLEELSILDCGISE 731 (889)
T ss_pred cccCcceEEEEcCCCch
Confidence 88999999999986543
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=6e-18 Score=177.40 Aligned_cols=202 Identities=20% Similarity=0.261 Sum_probs=123.5
Q ss_pred cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccc
Q 038551 35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWT 114 (366)
Q Consensus 35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 114 (366)
+|+.|.+.++.+..+|......+|+.|++.++.+..++.+ +..+++|+.++++++..++.+|. +..+++|++|++.+|
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC 667 (1153)
T ss_pred ccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC
Confidence 4566666666666666554556777777777777777666 56777788888777655666664 667777888888776
Q ss_pred -ccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551 115 -GITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL 193 (366)
Q Consensus 115 -~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 193 (366)
.+..+|..+..+++|+.|++++|+.++.+|.. + ++++|+.|++.+|.... .++.. ..+|+.
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~-------------~~p~~---~~nL~~ 729 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLK-------------SFPDI---STNISW 729 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCcc-------------ccccc---cCCcCe
Confidence 55677777777788888888877777777764 3 67777777777775432 11111 245566
Q ss_pred eeeccccchhhHhHhhhcccCcc--------------------------cceeeeccccCCCCCcchhhhccCCcCcEEE
Q 038551 194 LTITLQSFGALQRLLSYCRLGSI--------------------------STQCLCLRHLNNSNSLSVFAFASLRHLRTLQ 247 (366)
Q Consensus 194 L~l~~~~~~~~~~l~~~~~l~~l--------------------------~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~ 247 (366)
|++.++.+..+|....+.++..| .+..|++.++......+ ..+..+++|+.|+
T Consensus 730 L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~ 808 (1153)
T PLN03210 730 LDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-SSIQNLHKLEHLE 808 (1153)
T ss_pred eecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC-hhhhCCCCCCEEE
Confidence 66666655554432222222211 23334444443332222 2355666677777
Q ss_pred eccC-ccceEe
Q 038551 248 LYFN-DLEELK 257 (366)
Q Consensus 248 l~~~-~l~~l~ 257 (366)
+++| .++.+|
T Consensus 809 Ls~C~~L~~LP 819 (1153)
T PLN03210 809 IENCINLETLP 819 (1153)
T ss_pred CCCCCCcCeeC
Confidence 7666 566554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=1.3e-20 Score=174.27 Aligned_cols=282 Identities=20% Similarity=0.258 Sum_probs=216.1
Q ss_pred EEEecCCCcccC--C-CCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551 16 FLVLAGVGLTEA--P-SIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91 (366)
Q Consensus 16 ~~~~~~~~~~~~--~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 91 (366)
-+++.+++++.- | +...++.++.|.+.+..+..+|.. +++.+|+.|.+++|++..+... +..++.|+.++++.|+
T Consensus 11 GvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~ 89 (1255)
T KOG0444|consen 11 GVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNN 89 (1255)
T ss_pred cccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccc
Confidence 456677777743 3 466788999999999999999988 9999999999999999888777 8889999999999883
Q ss_pred C-CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccc
Q 038551 92 S-LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEA 170 (366)
Q Consensus 92 ~-~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 170 (366)
. ...+|..+..+..|..|||++|++++.|..+...+++-+|++++ +.+..+|..++.+++.|-.|++++|.+.
T Consensus 90 LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe----- 163 (1255)
T KOG0444|consen 90 LKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLE----- 163 (1255)
T ss_pred cccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccchhh-----
Confidence 3 23688888899999999999999999999999999999999999 7999999998999999999999999986
Q ss_pred cccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEecc
Q 038551 171 DSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYF 250 (366)
Q Consensus 171 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 250 (366)
..+..+..+.+|+.|.+++|....+ .+..++++++|++.+ .++-.....--..++..+.+|..++++.
T Consensus 164 ---------~LPPQ~RRL~~LqtL~Ls~NPL~hf-QLrQLPsmtsL~vLh--ms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 164 ---------MLPPQIRRLSMLQTLKLSNNPLNHF-QLRQLPSMTSLSVLH--MSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred ---------hcCHHHHHHhhhhhhhcCCChhhHH-HHhcCccchhhhhhh--cccccchhhcCCCchhhhhhhhhccccc
Confidence 7888999999999999999987754 344566666644433 3332221111113477889999999999
Q ss_pred CccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc-------ccCCcccccc
Q 038551 251 NDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK-------RLECAELKEL 323 (366)
Q Consensus 251 ~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~-------~~~~~~L~~L 323 (366)
|++..+|... ..+++|+.|+++-..++.|.+. ...-.+ |+.|+++.|. +-.++.|++|
T Consensus 232 N~Lp~vPecl---------y~l~~LrrLNLS~N~iteL~~~-----~~~W~~-lEtLNlSrNQLt~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 232 NNLPIVPECL---------YKLRNLRRLNLSGNKITELNMT-----EGEWEN-LETLNLSRNQLTVLPDAVCKLTKLTKL 296 (1255)
T ss_pred cCCCcchHHH---------hhhhhhheeccCcCceeeeecc-----HHHHhh-hhhhccccchhccchHHHhhhHHHHHH
Confidence 9999988655 4578888888873233333322 111334 6666666665 4455566666
Q ss_pred cCCCCCCC
Q 038551 324 PLDCNHGL 331 (366)
Q Consensus 324 ~l~~n~~~ 331 (366)
...+|++.
T Consensus 297 y~n~NkL~ 304 (1255)
T KOG0444|consen 297 YANNNKLT 304 (1255)
T ss_pred HhccCccc
Confidence 66666544
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=6.9e-17 Score=169.49 Aligned_cols=282 Identities=21% Similarity=0.189 Sum_probs=190.9
Q ss_pred CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCC-CCccccchhhcCCCCCCEEEccC
Q 038551 12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSN-HLGTVSNNFFHSMASLRVLILSY 89 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~-~~~~i~~~~~~~l~~L~~L~l~~ 89 (366)
.+.+.+.+.++.+..+|..-.+.+|+.|++.++.+..++.. ..+++|+.++++++ .+..+|. +..+++|+.|++++
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSD 666 (1153)
T ss_pred cccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecC
Confidence 34667777888888887766789999999999999998776 78999999999987 5677775 77899999999999
Q ss_pred CCCCCCcchhhcCCCCCcEEEcccc-ccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccc
Q 038551 90 NRSLENLPLGIFNLVSLQHLDISWT-GITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVEL 168 (366)
Q Consensus 90 ~~~~~~l~~~~~~l~~L~~L~l~~~-~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 168 (366)
|..+..+|..++++++|++|++++| .++.+|..+ ++++|+.|++++|..+..+|.. ..+|++|++.+|.+....
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEFP 741 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccccc
Confidence 9788899999999999999999998 678888765 7899999999999877777642 357888888888765311
Q ss_pred cc---cccc---cCC--chhh--------hhhhhcCcccceeeeccccch-hhHhHhhhcccCcccceeeeccccCCCCC
Q 038551 169 EA---DSIL---FGD--SEVL--------VEELLVLKHLNLLTITLQSFG-ALQRLLSYCRLGSISTQCLCLRHLNNSNS 231 (366)
Q Consensus 169 ~~---~~~~---~~~--~~~~--------~~~l~~l~~L~~L~l~~~~~~-~~~~l~~~~~l~~l~l~~L~~~~~~~~~~ 231 (366)
.. .... ... .... .......+.|+.|++++|... .+|.. +.++++ +..|++.+|..+..
T Consensus 742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s--i~~L~~--L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS--IQNLHK--LEHLEIENCINLET 817 (1153)
T ss_pred ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh--hhCCCC--CCEEECCCCCCcCe
Confidence 00 0000 000 0000 000112356777777766432 33321 334443 56677777766554
Q ss_pred cchhhhccCCcCcEEEeccC-ccceEeccccccccccccCCCCCcceeeee-------------cccceeEEeeccCccc
Q 038551 232 LSVFAFASLRHLRTLQLYFN-DLEELKIDAGELKRIREICGFHSLQKVFYK-------------ILKIEARDMACTCSQY 297 (366)
Q Consensus 232 ~~~~~l~~~~~L~~L~l~~~-~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~-------------l~~l~~L~l~~~c~~l 297 (366)
.+. ...+++|+.|++++| .+..++ ...++|+.|+++ ++.++.|++. +|.++
T Consensus 818 LP~--~~~L~sL~~L~Ls~c~~L~~~p------------~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~-~C~~L 882 (1153)
T PLN03210 818 LPT--GINLESLESLDLSGCSRLRTFP------------DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMN-GCNNL 882 (1153)
T ss_pred eCC--CCCccccCEEECCCCCcccccc------------ccccccCEeECCCCCCccChHHHhcCCCCCEEECC-CCCCc
Confidence 431 225778888888888 666554 223456666554 3344666677 77666
Q ss_pred cc-------cccccceEEeecCcccCCcccccccC
Q 038551 298 QA-------CPRGLTKFEEHPLKRLECAELKELPL 325 (366)
Q Consensus 298 ~~-------~~~~L~~L~l~~~~~~~~~~L~~L~l 325 (366)
+. ++. |+.+++ ..|++|..+.+
T Consensus 883 ~~l~~~~~~L~~-L~~L~l-----~~C~~L~~~~l 911 (1153)
T PLN03210 883 QRVSLNISKLKH-LETVDF-----SDCGALTEASW 911 (1153)
T ss_pred CccCcccccccC-CCeeec-----CCCcccccccC
Confidence 55 334 666665 44455544443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=3.1e-20 Score=163.45 Aligned_cols=151 Identities=28% Similarity=0.346 Sum_probs=81.7
Q ss_pred CCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 038551 33 WKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDI 111 (366)
Q Consensus 33 ~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 111 (366)
+.++..+++.+|.+..+|+. -.++.|+.++...|.+..+|+. ++.+.+|..|++..| .+..+| .|+++..|.++++
T Consensus 159 ~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~-lg~l~~L~~LyL~~N-ki~~lP-ef~gcs~L~Elh~ 235 (565)
T KOG0472|consen 159 LSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPE-LGGLESLELLYLRRN-KIRFLP-EFPGCSLLKELHV 235 (565)
T ss_pred HHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChh-hcchhhhHHHHhhhc-ccccCC-CCCccHHHHHHHh
Confidence 33334444444444443333 2344444455444444555554 444555555555555 455555 2555555555555
Q ss_pred ccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcc
Q 038551 112 SWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKH 190 (366)
Q Consensus 112 ~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 190 (366)
+.|.++.+|.. ...+.++.+||+.. +.+.+.|.+ +..+.+|+.|++++|.++ ..+..++++ +
T Consensus 236 g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde-~clLrsL~rLDlSNN~is--------------~Lp~sLgnl-h 298 (565)
T KOG0472|consen 236 GENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDE-ICLLRSLERLDLSNNDIS--------------SLPYSLGNL-H 298 (565)
T ss_pred cccHHHhhHHHHhcccccceeeeccc-cccccCchH-HHHhhhhhhhcccCCccc--------------cCCcccccc-e
Confidence 55555555544 23556666666666 566666665 555566666666666665 456666667 7
Q ss_pred cceeeeccccchh
Q 038551 191 LNLLTITLQSFGA 203 (366)
Q Consensus 191 L~~L~l~~~~~~~ 203 (366)
|+.|.+.+|....
T Consensus 299 L~~L~leGNPlrT 311 (565)
T KOG0472|consen 299 LKFLALEGNPLRT 311 (565)
T ss_pred eeehhhcCCchHH
Confidence 7777777765543
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.67 E-value=4.2e-18 Score=149.80 Aligned_cols=322 Identities=21% Similarity=0.185 Sum_probs=206.4
Q ss_pred eeccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCC
Q 038551 6 ASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLR 83 (366)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~ 83 (366)
+|.|..-+-..+.|.+.|+.+||.-.. +..+.+++..|+|+.+|+. ..+++||.|++++|.|..|.+++|..++.|.
T Consensus 40 pC~Cs~~~g~~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~ 118 (498)
T KOG4237|consen 40 PCTCSDVEGGIVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLL 118 (498)
T ss_pred CcccCCCCCceEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhh
Confidence 378887667888999999999975432 6778899999999999987 8899999999999999999999999999988
Q ss_pred EEEccCCCCCCCcch-hhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeec
Q 038551 84 VLILSYNRSLENLPL-GIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFE 161 (366)
Q Consensus 84 ~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (366)
.|.+.++..++.+|. .|+++..|+.|.+..|++..++. .+..+++|..|.+.+ +.+..++.+.+..+.+++.+++..
T Consensus 119 ~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 119 SLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred HHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhc
Confidence 888777448999984 58899999999999999986655 488999999999999 788888887788999999999988
Q ss_pred CCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCC
Q 038551 162 CGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLR 241 (366)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~ 241 (366)
|.+..-=...+..+. ....+-.++...-..-..+.+..+.+.+.-.....+++ ....+.. .+......+..-|.+++
T Consensus 198 np~icdCnL~wla~~-~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~es-l~s~~~~-~d~~d~~cP~~cf~~L~ 274 (498)
T KOG4237|consen 198 NPFICDCNLPWLADD-LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLES-LPSRLSS-EDFPDSICPAKCFKKLP 274 (498)
T ss_pred CccccccccchhhhH-HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHh-HHHhhcc-ccCcCCcChHHHHhhcc
Confidence 774320000000000 00111111111112222222222222211111111111 0001111 11111222223477889
Q ss_pred cCcEEEeccCccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc--------
Q 038551 242 HLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK-------- 313 (366)
Q Consensus 242 ~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~-------- 313 (366)
+|++|++++|.++.+...++ .....+++|.+.-.+++.++- .-+..+.. |+.|+|.+|+
T Consensus 275 ~L~~lnlsnN~i~~i~~~aF--------e~~a~l~eL~L~~N~l~~v~~----~~f~~ls~-L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAF--------EGAAELQELYLTRNKLEFVSS----GMFQGLSG-LKTLSLYDNQITTVAPGA 341 (498)
T ss_pred cceEeccCCCccchhhhhhh--------cchhhhhhhhcCcchHHHHHH----Hhhhcccc-ceeeeecCCeeEEEeccc
Confidence 99999999999988765443 345556666554111111100 01111344 8888888888
Q ss_pred ccCCcccccccCCCCCCCCceEEEeechhcccc
Q 038551 314 RLECAELKELPLDCNHGLEQKIIIKGQEHWWNE 346 (366)
Q Consensus 314 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 346 (366)
.....+|.+|++-+|++..+.. ..+-.+|.++
T Consensus 342 F~~~~~l~~l~l~~Np~~CnC~-l~wl~~Wlr~ 373 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPFNCNCR-LAWLGEWLRK 373 (498)
T ss_pred ccccceeeeeehccCcccCccc-hHHHHHHHhh
Confidence 5567788889999998865532 2344455443
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=8.8e-16 Score=151.33 Aligned_cols=257 Identities=21% Similarity=0.176 Sum_probs=169.4
Q ss_pred eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEE
Q 038551 7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLI 86 (366)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~ 86 (366)
++|-+.+...+++..+++..+|.-- .++|+.|++.+|.++.+|. ..++|++|++++|.+..+|.. .++|+.|+
T Consensus 196 ~~Cl~~~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~ 268 (788)
T PRK15387 196 RACLNNGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL----PPGLLELS 268 (788)
T ss_pred HHHhcCCCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc----ccccceee
Confidence 3566777888999999999987522 2589999999999999885 468999999999999988753 46899999
Q ss_pred ccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551 87 LSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 87 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
+++| .+..+|..+ .+|+.|++++|+++.+|.. +++|+.|++++ |.+..+|.. ..+|+.|.+.+|.+..
T Consensus 269 Ls~N-~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l----p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSN-PLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL----PSELCKLWAYNNQLTS 336 (788)
T ss_pred ccCC-chhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC----cccccccccccCcccc
Confidence 9999 677777533 5688899999999988863 57899999998 466666642 2357778888888763
Q ss_pred cccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEE
Q 038551 167 ELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTL 246 (366)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L 246 (366)
++. ....|+.|++++|.+..+|.+ ..+ +..|++... .+...+ . ...+|+.|
T Consensus 337 --------------LP~---lp~~Lq~LdLS~N~Ls~LP~l--p~~-----L~~L~Ls~N-~L~~LP--~--l~~~L~~L 387 (788)
T PRK15387 337 --------------LPT---LPSGLQELSVSDNQLASLPTL--PSE-----LYKLWAYNN-RLTSLP--A--LPSGLKEL 387 (788)
T ss_pred --------------ccc---cccccceEecCCCccCCCCCC--Ccc-----cceehhhcc-ccccCc--c--cccccceE
Confidence 111 124688888888888876643 122 333433332 111111 0 12468888
Q ss_pred EeccCccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc-------ccCCcc
Q 038551 247 QLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK-------RLECAE 319 (366)
Q Consensus 247 ~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~-------~~~~~~ 319 (366)
++++|.++.++ ...++|+.|+++-..+ . ..+. +|..|+.|++++|. +..+++
T Consensus 388 dLs~N~Lt~LP------------~l~s~L~~LdLS~N~L-----s-sIP~---l~~~L~~L~Ls~NqLt~LP~sl~~L~~ 446 (788)
T PRK15387 388 IVSGNRLTSLP------------VLPSELKELMVSGNRL-----T-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSS 446 (788)
T ss_pred EecCCcccCCC------------CcccCCCEEEccCCcC-----C-CCCc---chhhhhhhhhccCcccccChHHhhccC
Confidence 88888777554 2234566665541111 0 1111 11125666666655 345566
Q ss_pred cccccCCCCCCCC
Q 038551 320 LKELPLDCNHGLE 332 (366)
Q Consensus 320 L~~L~l~~n~~~~ 332 (366)
|..|++++|++++
T Consensus 447 L~~LdLs~N~Ls~ 459 (788)
T PRK15387 447 ETTVNLEGNPLSE 459 (788)
T ss_pred CCeEECCCCCCCc
Confidence 6667777776653
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=2.7e-19 Score=157.58 Aligned_cols=259 Identities=23% Similarity=0.240 Sum_probs=192.0
Q ss_pred cEEEecCCCcccC-CCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551 15 NFLVLAGVGLTEA-PSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS 92 (366)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 92 (366)
.-+.+.++.+..+ +.+.++..++.|++++|++..+|+. .....+..++.+.|++..+|+. ...+.+|..+++++| .
T Consensus 48 ~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n-~ 125 (565)
T KOG0472|consen 48 QKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSN-E 125 (565)
T ss_pred hhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-Hhhhhhhhhhhcccc-c
Confidence 3445667777766 7788888889999999988888877 7788888888888888888887 677888888898888 6
Q ss_pred CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccc
Q 038551 93 LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADS 172 (366)
Q Consensus 93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 172 (366)
..++|+.++.+..|..++..+|++..+|..+.++.+|..+++.+ +.+...|...+. ++.|++++...|.+.
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N~L~------- 196 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSNLLE------- 196 (565)
T ss_pred eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH-HHHHHhcccchhhhh-------
Confidence 77788888888888888888889999998888888888888888 677777776454 888999988888776
Q ss_pred cccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCc
Q 038551 173 ILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFND 252 (366)
Q Consensus 173 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 252 (366)
..+..++.+..|+.|++..|++..+|++.....+.. .++..+.+. -.+.+....++++..||+.+|+
T Consensus 197 -------tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~E---lh~g~N~i~---~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 197 -------TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKE---LHVGENQIE---MLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred -------cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHH---HHhcccHHH---hhHHHHhcccccceeeeccccc
Confidence 678888899999999999999888887665555444 222222222 2222224577888999999999
Q ss_pred cceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc
Q 038551 253 LEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK 313 (366)
Q Consensus 253 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~ 313 (366)
++++|.+. .-+.+|..|+++--.+..|..+ +..+ + |+.|-+.|||
T Consensus 264 lke~Pde~---------clLrsL~rLDlSNN~is~Lp~s-----Lgnl-h-L~~L~leGNP 308 (565)
T KOG0472|consen 264 LKEVPDEI---------CLLRSLERLDLSNNDISSLPYS-----LGNL-H-LKFLALEGNP 308 (565)
T ss_pred cccCchHH---------HHhhhhhhhcccCCccccCCcc-----cccc-e-eeehhhcCCc
Confidence 99888655 3356677776651111111111 2224 4 7888888888
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=3.3e-18 Score=134.32 Aligned_cols=165 Identities=24% Similarity=0.358 Sum_probs=147.4
Q ss_pred cccCCCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcC
Q 038551 24 LTEAPSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN 102 (366)
Q Consensus 24 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~ 102 (366)
+.+++.+-.+.+.++|.+++|.++.+|+. +.+.+|++|++.+|.+..+|.+ +..+++|+.|+++.| .+..+|..|+.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCC
Confidence 44557777888999999999999998887 9999999999999999999998 889999999999999 78889999999
Q ss_pred CCCCcEEEccccccc--cccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchh
Q 038551 103 LVSLQHLDISWTGIT--TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEV 180 (366)
Q Consensus 103 l~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 180 (366)
++.|+.||+.+|++. .+|..+..+..|+.|+++. +...-+|.+ ++++++|+.|.+..|.+. .
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll--------------~ 164 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL--------------S 164 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh--------------h
Confidence 999999999999886 6888888899999999999 688888888 899999999999999887 6
Q ss_pred hhhhhhcCcccceeeeccccchhhHh
Q 038551 181 LVEELLVLKHLNLLTITLQSFGALQR 206 (366)
Q Consensus 181 ~~~~l~~l~~L~~L~l~~~~~~~~~~ 206 (366)
.+.+++.+..|+.|.+.+|..+.+|+
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeecCh
Confidence 78889999999999999998887653
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=9.3e-17 Score=154.85 Aligned_cols=267 Identities=21% Similarity=0.240 Sum_probs=180.8
Q ss_pred EEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCC
Q 038551 16 FLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLEN 95 (366)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~ 95 (366)
.+.+..+++..+..- -++++.|+...|.+..+.....-.+|++++++.+.+..+| +++..|.+|+.++..+| .+..
T Consensus 203 ~l~c~rn~ls~l~~~--g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~ 278 (1081)
T KOG0618|consen 203 VLHCERNQLSELEIS--GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVA 278 (1081)
T ss_pred hhhhhhcccceEEec--CcchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHh
Confidence 344455555544221 1677888888887775444456678999999999999999 66899999999999999 6788
Q ss_pred cchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcC-------------------------
Q 038551 96 LPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISD------------------------- 150 (366)
Q Consensus 96 l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~------------------------- 150 (366)
+|..+....+|++|++..|.+..+|.....++.|++|++.. +.+..+|...+..
T Consensus 279 lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 279 LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 99888889999999999999999999888899999999998 6777777642221
Q ss_pred CcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCC
Q 038551 151 LKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSN 230 (366)
Q Consensus 151 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~ 230 (366)
.+.|+.|++.+|.+++ ..+..+.++.+|+.|++++|.+..+|.-. +.++.. +..|.+++.. ++
T Consensus 358 ~~~Lq~LylanN~Ltd-------------~c~p~l~~~~hLKVLhLsyNrL~~fpas~-~~kle~--LeeL~LSGNk-L~ 420 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTD-------------SCFPVLVNFKHLKVLHLSYNRLNSFPASK-LRKLEE--LEELNLSGNK-LT 420 (1081)
T ss_pred hHHHHHHHHhcCcccc-------------cchhhhccccceeeeeecccccccCCHHH-HhchHH--hHHHhcccch-hh
Confidence 2235555556666655 66777778888888888888777665422 344444 2334343321 22
Q ss_pred CcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccc------c--cc
Q 038551 231 SLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQA------C--PR 302 (366)
Q Consensus 231 ~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~------~--~~ 302 (366)
..+ ..++.+..|++|....|.+..+| +. ..++.|+.++++ |.+++. . |+
T Consensus 421 ~Lp-~tva~~~~L~tL~ahsN~l~~fP-e~---------~~l~qL~~lDlS------------~N~L~~~~l~~~~p~p~ 477 (1081)
T KOG0618|consen 421 TLP-DTVANLGRLHTLRAHSNQLLSFP-EL---------AQLPQLKVLDLS------------CNNLSEVTLPEALPSPN 477 (1081)
T ss_pred hhh-HHHHhhhhhHHHhhcCCceeech-hh---------hhcCcceEEecc------------cchhhhhhhhhhCCCcc
Confidence 222 23566777777777777777666 22 446667777663 444433 2 56
Q ss_pred ccceEEeecCc--------ccCCcccccccCCCC
Q 038551 303 GLTKFEEHPLK--------RLECAELKELPLDCN 328 (366)
Q Consensus 303 ~L~~L~l~~~~--------~~~~~~L~~L~l~~n 328 (366)
|++|+++||. +..|..+...++.-+
T Consensus 478 -LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 478 -LKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred -cceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 8888888887 444455544444433
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.3e-17 Score=129.59 Aligned_cols=149 Identities=31% Similarity=0.420 Sum_probs=136.1
Q ss_pred ccEEEecCCCcccC-CCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551 14 ENFLVLAGVGLTEA-PSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91 (366)
Q Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 91 (366)
.+.+.+.++.+..+ |.++.+.+|+.|++.+|+++.+|.. ..+++|+.|++.-|++..+|.+ |+.++.|++||+.+|.
T Consensus 35 ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynn 113 (264)
T KOG0617|consen 35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNN 113 (264)
T ss_pred hhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhccccc
Confidence 44567788888888 7899999999999999999999988 9999999999999999999999 9999999999999994
Q ss_pred CCC-CcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551 92 SLE-NLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN 165 (366)
Q Consensus 92 ~~~-~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 165 (366)
..+ .+|..|..+..|+-|.+++|.++.+|..++++++||.|.+.. +.+-++|.+ ++.++.|++|++.+|.++
T Consensus 114 l~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 114 LNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhcccceee
Confidence 433 578888889999999999999999999999999999999999 677889998 999999999999999987
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=1.4e-14 Score=143.54 Aligned_cols=261 Identities=21% Similarity=0.211 Sum_probs=176.8
Q ss_pred ccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEc
Q 038551 8 TINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLIL 87 (366)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l 87 (366)
+|-.+....+.+.+.++..+|... .+.++.|++++|.++.+|.. ...+|+.|++++|.+..+|.. + ..+|+.|++
T Consensus 174 ~Cl~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~-l--~~~L~~L~L 248 (754)
T PRK15370 174 DCLKNNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPAT-L--PDTIQEMEL 248 (754)
T ss_pred hhcccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChh-h--hccccEEEC
Confidence 455667778888888898887522 26899999999999988765 235899999999999988876 3 357999999
Q ss_pred cCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccc
Q 038551 88 SYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVE 167 (366)
Q Consensus 88 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 167 (366)
++| .+..+|..+. .+|++|++++|.++.+|..+. ++|+.|++++ +.+..+|.. +. ++|++|++.+|.+..
T Consensus 249 s~N-~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SIN-RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-LP--SGITHLNVQSNSLTA- 318 (754)
T ss_pred cCC-ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-ch--hhHHHHHhcCCcccc-
Confidence 999 6778887664 589999999999998887553 5899999998 466677754 22 478889999998863
Q ss_pred ccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEE
Q 038551 168 LEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQ 247 (366)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~ 247 (366)
.+..+ .++|+.|++.+|.+..++... + . .+..|+++++. +...+ ..+ .+.|++|+
T Consensus 319 -------------LP~~l--~~sL~~L~Ls~N~Lt~LP~~l--~---~-sL~~L~Ls~N~-L~~LP-~~l--p~~L~~Ld 373 (754)
T PRK15370 319 -------------LPETL--PPGLKTLEAGENALTSLPASL--P---P-ELQVLDVSKNQ-ITVLP-ETL--PPTITTLD 373 (754)
T ss_pred -------------CCccc--cccceeccccCCccccCChhh--c---C-cccEEECCCCC-CCcCC-hhh--cCCcCEEE
Confidence 22222 257888999998888766421 1 1 35556666543 22222 112 35899999
Q ss_pred eccCccceEeccccccccccccCCCCCcceeeeecccceeEE--eeccCccccccccccceEEeecCc--ccCCcccccc
Q 038551 248 LYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARD--MACTCSQYQACPRGLTKFEEHPLK--RLECAELKEL 323 (366)
Q Consensus 248 l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~--l~~~c~~l~~~~~~L~~L~l~~~~--~~~~~~L~~L 323 (366)
+++|.+..++... ...|+.|+++-..+..+. +. .+ ....|+ +..|++.+|+ ...+++|+.+
T Consensus 374 Ls~N~Lt~LP~~l-----------~~sL~~LdLs~N~L~~LP~sl~-~~--~~~~~~-l~~L~L~~Npls~~tl~~L~~L 438 (754)
T PRK15370 374 VSRNALTNLPENL-----------PAALQIMQASRNNLVRLPESLP-HF--RGEGPQ-PTRIIVEYNPFSERTIQNMQRL 438 (754)
T ss_pred CCCCcCCCCCHhH-----------HHHHHHHhhccCCcccCchhHH-HH--hhcCCC-ccEEEeeCCCccHHHHHHHHHh
Confidence 9999888776321 134666655422221111 11 11 011466 8889999888 3344444444
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.53 E-value=9.6e-16 Score=147.96 Aligned_cols=120 Identities=25% Similarity=0.306 Sum_probs=94.1
Q ss_pred EEEecCCCccc--CCCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551 16 FLVLAGVGLTE--APSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS 92 (366)
Q Consensus 16 ~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 92 (366)
.+....+.+.+ ++...+.-+|+.|++++|.+..+|.. ..+.+|+.|.++.|.|..+|.+ ...+.+|++++|.+| +
T Consensus 25 ~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~ 102 (1081)
T KOG0618|consen 25 ILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-R 102 (1081)
T ss_pred hhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-h
Confidence 33444444444 23445556799999999999888866 7888999999999988888866 788999999999998 8
Q ss_pred CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccc
Q 038551 93 LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYT 137 (366)
Q Consensus 93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~ 137 (366)
...+|..+..+++|++|++++|.+..+|..+..+..+..+..++|
T Consensus 103 l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 103 LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcc
Confidence 888998899999999999999998888877666666666666664
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=1.2e-13 Score=136.89 Aligned_cols=236 Identities=19% Similarity=0.233 Sum_probs=166.2
Q ss_pred CcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccc
Q 038551 34 KETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISW 113 (366)
Q Consensus 34 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~ 113 (366)
.+.+.|++.++.++.+|.. -.+.++.|++++|.+..+|... .++|+.|++++| .++.+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENL---QGNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhh---ccCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 3568899999999988864 1247999999999999998873 358999999999 6788887654 5799999999
Q ss_pred cccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551 114 TGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL 193 (366)
Q Consensus 114 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 193 (366)
|.+..+|..+. .+|+.|++++ +.+..+|.. +. ++|+.|++++|.+.. .+..+. ..|+.
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~-l~--~sL~~L~Ls~N~Lt~--------------LP~~lp--~sL~~ 308 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFH-NKISCLPEN-LP--EELRYLSVYDNSIRT--------------LPAHLP--SGITH 308 (754)
T ss_pred CccCcCChhHh--CCCCEEECcC-CccCccccc-cC--CCCcEEECCCCcccc--------------Ccccch--hhHHH
Confidence 99999987653 5899999997 577778765 32 589999999998874 222221 46888
Q ss_pred eeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCC
Q 038551 194 LTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFH 273 (366)
Q Consensus 194 L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~ 273 (366)
|++++|.+..++... .. .+..|.+.++. ++..+ ..+ .++|+.|++++|.++.++... .+
T Consensus 309 L~Ls~N~Lt~LP~~l-~~-----sL~~L~Ls~N~-Lt~LP-~~l--~~sL~~L~Ls~N~L~~LP~~l-----------p~ 367 (754)
T PRK15370 309 LNVQSNSLTALPETL-PP-----GLKTLEAGENA-LTSLP-ASL--PPELQVLDVSKNQITVLPETL-----------PP 367 (754)
T ss_pred HHhcCCccccCCccc-cc-----cceeccccCCc-cccCC-hhh--cCcccEEECCCCCCCcCChhh-----------cC
Confidence 899998888765321 12 34455555543 22222 112 368999999999888665311 24
Q ss_pred CcceeeeecccceeEEeeccCcccccc----ccccceEEeecCcc-----------cCCcccccccCCCCCCC
Q 038551 274 SLQKVFYKILKIEARDMACTCSQYQAC----PRGLTKFEEHPLKR-----------LECAELKELPLDCNHGL 331 (366)
Q Consensus 274 ~L~~L~l~l~~l~~L~l~~~c~~l~~~----~~~L~~L~l~~~~~-----------~~~~~L~~L~l~~n~~~ 331 (366)
.|+.|+++ +| .++.+ |.+|+.|++++|.+ ..++.+..|.+.+|++.
T Consensus 368 ~L~~LdLs-----------~N-~Lt~LP~~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 368 TITTLDVS-----------RN-ALTNLPENLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CcCEEECC-----------CC-cCCCCCHhHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 56666553 33 23332 22388888888872 23477788999999975
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=4.7e-13 Score=132.25 Aligned_cols=234 Identities=20% Similarity=0.112 Sum_probs=164.5
Q ss_pred CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551 13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS 92 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 92 (366)
....+++.++.+..+|.. .++|++|++++|.++.+|.. .++|+.|++++|.+..+|.. ...|+.|++++| .
T Consensus 223 ~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l----p~~L~~L~Ls~N-~ 293 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL----PSGLCKLWIFGN-Q 293 (788)
T ss_pred CCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc----hhhcCEEECcCC-c
Confidence 456788888999998864 58999999999999998753 56899999999999887763 367889999999 7
Q ss_pred CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccc
Q 038551 93 LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADS 172 (366)
Q Consensus 93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 172 (366)
++.+|.. .++|++|++++|.++.+|.. ..+|+.|++.+ +.+..+|.. ..+|+.|++++|++..
T Consensus 294 Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~-N~L~~LP~l----p~~Lq~LdLS~N~Ls~------ 356 (788)
T PRK15387 294 LTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYN-NQLTSLPTL----PSGLQELSVSDNQLAS------ 356 (788)
T ss_pred ccccccc---ccccceeECCCCccccCCCC---ccccccccccc-Ccccccccc----ccccceEecCCCccCC------
Confidence 7888763 47899999999999988763 34677888888 566677642 2479999999999874
Q ss_pred cccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCc
Q 038551 173 ILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFND 252 (366)
Q Consensus 173 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 252 (366)
.+.. ..+|..|++++|.+..++... . .+..|++++.. +...+ ...++|+.|++++|.
T Consensus 357 --------LP~l---p~~L~~L~Ls~N~L~~LP~l~--~-----~L~~LdLs~N~-Lt~LP----~l~s~L~~LdLS~N~ 413 (788)
T PRK15387 357 --------LPTL---PSELYKLWAYNNRLTSLPALP--S-----GLKELIVSGNR-LTSLP----VLPSELKELMVSGNR 413 (788)
T ss_pred --------CCCC---CcccceehhhccccccCcccc--c-----ccceEEecCCc-ccCCC----CcccCCCEEEccCCc
Confidence 1211 246777888888888766431 2 24445555432 22222 113589999999998
Q ss_pred cceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc
Q 038551 253 LEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK 313 (366)
Q Consensus 253 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~ 313 (366)
++.++ ..+.+|+.|+++-..+..+ . ..+..++. |+.|+|++|+
T Consensus 414 LssIP------------~l~~~L~~L~Ls~NqLt~L--P---~sl~~L~~-L~~LdLs~N~ 456 (788)
T PRK15387 414 LTSLP------------MLPSGLLSLSVYRNQLTRL--P---ESLIHLSS-ETTVNLEGNP 456 (788)
T ss_pred CCCCC------------cchhhhhhhhhccCccccc--C---hHHhhccC-CCeEECCCCC
Confidence 88765 2234566666542122211 1 11333666 9999999998
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.44 E-value=2.5e-14 Score=126.27 Aligned_cols=255 Identities=20% Similarity=0.214 Sum_probs=170.0
Q ss_pred CccEEEecCCCcccCC--CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccC-CCCccccchhhcCCCCCCEEEc
Q 038551 13 KENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPS-NHLGTVSNNFFHSMASLRVLIL 87 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~-~~~~~i~~~~~~~l~~L~~L~l 87 (366)
+..-+.++.|+++.+| .|+.+++||+|++++|+|+.+.+. ..++.+..|.+.+ |+|+++|.+.|+.+..|+-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3445678999999995 699999999999999999998665 7888888877766 8999999999999999999999
Q ss_pred cCCCCCCCc-chhhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCc------------cChhhhcCCcC
Q 038551 88 SYNRSLENL-PLGIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSR------------IPQQVISDLKM 153 (366)
Q Consensus 88 ~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~------------~~~~~~~~~~~ 153 (366)
.-| .+.-+ ...+..+++|..|.+.+|.+..++. .+..+..++++++..+.++.. .+.. ++...-
T Consensus 148 Nan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc 225 (498)
T KOG4237|consen 148 NAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARC 225 (498)
T ss_pred Chh-hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-ccccee
Confidence 988 55544 4678899999999999999998887 488899999999887653322 1111 111100
Q ss_pred CcEEEeecCCcccc--------c-ccc----ccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCccccee
Q 038551 154 LRALRMFECGFNVE--------L-EAD----SILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQC 220 (366)
Q Consensus 154 L~~L~l~~~~~~~~--------~-~~~----~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~ 220 (366)
..-..+....+..+ + ++. ............-+..+++|+++++++|+++.+..- .+....+++...
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~-aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG-AFEGAAELQELY 304 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh-hhcchhhhhhhh
Confidence 00000000000000 0 000 000011123334467899999999999998876431 133333333344
Q ss_pred eeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeee
Q 038551 221 LCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK 281 (366)
Q Consensus 221 L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 281 (366)
|+-+++..+... .|.++..|+.|++++|+++.+...++ .....|..|.+-
T Consensus 305 L~~N~l~~v~~~---~f~~ls~L~tL~L~~N~it~~~~~aF--------~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 305 LTRNKLEFVSSG---MFQGLSGLKTLSLYDNQITTVAPGAF--------QTLFSLSTLNLL 354 (498)
T ss_pred cCcchHHHHHHH---hhhccccceeeeecCCeeEEEecccc--------cccceeeeeehc
Confidence 444444443333 37888999999999999998865443 445566666554
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.43 E-value=1.2e-13 Score=125.86 Aligned_cols=161 Identities=21% Similarity=0.169 Sum_probs=79.6
Q ss_pred CCCcccEEEcccCCccc-----cCCC-CCCCCccEEEccCCCCcccc------chhhcCCCCCCEEEccCCCCCCCcchh
Q 038551 32 MWKETTRMSLMQNAIQN-----LTEI-PTCPRLRTLFLPSNHLGTVS------NNFFHSMASLRVLILSYNRSLENLPLG 99 (366)
Q Consensus 32 ~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~i~------~~~~~~l~~L~~L~l~~~~~~~~l~~~ 99 (366)
.+..|+.+++.++.++. ++.. ...+.++.++++++.+...+ ...+..+++|+.|++++|......+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 34456667777666633 2222 45555666666666544211 122445666666666666333333333
Q ss_pred hcCCCC---CcEEEccccccc-----cccccccCC-CCCCEEEcccccccCc----cChhhhcCCcCCcEEEeecCCccc
Q 038551 100 IFNLVS---LQHLDISWTGIT-----TLPIELKYL-VNLKCLNLEYTFRLSR----IPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 100 ~~~l~~---L~~L~l~~~~~~-----~l~~~l~~l-~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|..... ++.. +..+++|++|++.+|.+.+
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCch
Confidence 333333 666666666554 122233444 5666666666543321 1111 3345566666666666553
Q ss_pred cccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551 167 ELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG 202 (366)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 202 (366)
. .....+..+..+++|+.|++++|.+.
T Consensus 180 ~---------~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 180 A---------GIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred H---------HHHHHHHHHHhCCCCCEEeccCCccC
Confidence 0 01122333444456666666655543
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.26 E-value=6.6e-12 Score=102.45 Aligned_cols=137 Identities=25% Similarity=0.267 Sum_probs=46.5
Q ss_pred ecCCCcccCCCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc
Q 038551 19 LAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP 97 (366)
Q Consensus 19 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~ 97 (366)
+..+.+..++...+..+++.|++.+|.|+.+... ..+.+|+.|++++|.+..+.. +..+++|++|++++| .++.+.
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSIS 80 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-C
T ss_pred ccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccc
Confidence 3445566677777778889999999988887666 467888999999998888765 777888999999988 677776
Q ss_pred hhh-cCCCCCcEEEccccccccccc--cccCCCCCCEEEcccccccCccC---hhhhcCCcCCcEEEe
Q 038551 98 LGI-FNLVSLQHLDISWTGITTLPI--ELKYLVNLKCLNLEYTFRLSRIP---QQVISDLKMLRALRM 159 (366)
Q Consensus 98 ~~~-~~l~~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l 159 (366)
..+ ..+++|++|++++|++..+.. .+..+++|+.|++.+|+.. ..+ ..++..+|+|+.|+.
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETT
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCC
Confidence 544 367888888888888875543 3667788888888875433 222 123456666766653
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.23 E-value=4.8e-12 Score=110.41 Aligned_cols=228 Identities=20% Similarity=0.172 Sum_probs=132.5
Q ss_pred CCCCCccEEEccCCCCcc----ccchhhcCCCCCCEEEccCCCCCC----Ccch-------hhcCCCCCcEEEccccccc
Q 038551 53 PTCPRLRTLFLPSNHLGT----VSNNFFHSMASLRVLILSYNRSLE----NLPL-------GIFNLVSLQHLDISWTGIT 117 (366)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~----i~~~~~~~l~~L~~L~l~~~~~~~----~l~~-------~~~~l~~L~~L~l~~~~~~ 117 (366)
..+..++.+++++|.|+. .-...+.+.+.|++.++++- +.+ .+|+ ++-.+++|++|+|++|.+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 344556666666666641 22233555667777777664 333 2332 2345567777777777664
Q ss_pred -c-c---cccccCCCCCCEEEcccccccCccChhh-------------hcCCcCCcEEEeecCCccccccccccccCCch
Q 038551 118 -T-L---PIELKYLVNLKCLNLEYTFRLSRIPQQV-------------ISDLKMLRALRMFECGFNVELEADSILFGDSE 179 (366)
Q Consensus 118 -~-l---~~~l~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 179 (366)
. + ..-++++..|++|++.+| .++...... ++.-+.|+.+...+|.+.+ ....
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen---------~ga~ 175 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN---------GGAT 175 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc---------ccHH
Confidence 1 2 122566777777777774 444333221 2345667788777777664 2233
Q ss_pred hhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEecc
Q 038551 180 VLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKID 259 (366)
Q Consensus 180 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~ 259 (366)
.+...+..++.|+.+.+.+|.+..-. + ..-..++..|++|+.|++.+|-++.-...
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG-----------------------~-~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEG-----------------------V-TALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred HHHHHHHhccccceEEEecccccCch-----------------------h-HHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 45566666777777777766554210 0 00002366777888888877755543322
Q ss_pred ccccccccccCCCCCcceeeeecccceeEEeeccC-------ccc----cc-cccccceEEeecCc------------cc
Q 038551 260 AGELKRIREICGFHSLQKVFYKILKIEARDMACTC-------SQY----QA-CPRGLTKFEEHPLK------------RL 315 (366)
Q Consensus 260 ~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c-------~~l----~~-~~~~L~~L~l~~~~------------~~ 315 (366)
..+ . +.+.++.|+.|+++ +| ..+ .. +|+ |++|++.+|. +.
T Consensus 232 ~La--k--aL~s~~~L~El~l~-----------dcll~~~Ga~a~~~al~~~~p~-L~vl~l~gNeIt~da~~~la~~~~ 295 (382)
T KOG1909|consen 232 ALA--K--ALSSWPHLRELNLG-----------DCLLENEGAIAFVDALKESAPS-LEVLELAGNEITRDAALALAACMA 295 (382)
T ss_pred HHH--H--Hhcccchheeeccc-----------ccccccccHHHHHHHHhccCCC-CceeccCcchhHHHHHHHHHHHHh
Confidence 211 1 11455666666554 33 111 11 788 9999999888 66
Q ss_pred CCcccccccCCCCCCC
Q 038551 316 ECAELKELPLDCNHGL 331 (366)
Q Consensus 316 ~~~~L~~L~l~~n~~~ 331 (366)
..|.|.+|++++|.+.
T Consensus 296 ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 296 EKPDLEKLNLNGNRLG 311 (382)
T ss_pred cchhhHHhcCCccccc
Confidence 7899999999999984
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.22 E-value=2.3e-11 Score=110.82 Aligned_cols=230 Identities=23% Similarity=0.162 Sum_probs=148.7
Q ss_pred ccEEEecCCCc-----ccC-CCCCCCCcccEEEcccCCccc-------cCCC-CCCCCccEEEccCCCCccccchhhcCC
Q 038551 14 ENFLVLAGVGL-----TEA-PSIGMWKETTRMSLMQNAIQN-------LTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSM 79 (366)
Q Consensus 14 ~~~~~~~~~~~-----~~~-~~~~~~~~L~~L~l~~~~~~~-------l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l 79 (366)
...+.+.++.+ ..+ ..+...+.++++++.++.+.. ++.. ..+++|+.|++++|.+.......+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 34556666665 223 245567789999999987762 1222 568899999999998864333334444
Q ss_pred CC---CCEEEccCCCCCC----CcchhhcCC-CCCcEEEccccccc-----cccccccCCCCCCEEEcccccccCc----
Q 038551 80 AS---LRVLILSYNRSLE----NLPLGIFNL-VSLQHLDISWTGIT-----TLPIELKYLVNLKCLNLEYTFRLSR---- 142 (366)
Q Consensus 80 ~~---L~~L~l~~~~~~~----~l~~~~~~l-~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~l~~~~~~~~---- 142 (366)
.. |+.|++++|+... .+...+..+ ++|+.|++++|.++ .++..+..+++|++|++++|+..+.
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 44 9999999994331 233445666 89999999999887 3444567888999999999654432
Q ss_pred cChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchh--hHhHhhh-c-ccCcccc
Q 038551 143 IPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA--LQRLLSY-C-RLGSIST 218 (366)
Q Consensus 143 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~l~~~-~-~l~~l~l 218 (366)
++.. +...++|++|++.+|.+.+.. .......+..+++|+.|++++|.+.. +..+... . ... .+
T Consensus 185 l~~~-l~~~~~L~~L~L~~n~i~~~~---------~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~--~L 252 (319)
T cd00116 185 LAEG-LKANCNLEVLDLNNNGLTDEG---------ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI--SL 252 (319)
T ss_pred HHHH-HHhCCCCCEEeccCCccChHH---------HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC--Cc
Confidence 2222 445679999999999987510 12344566778999999999987764 2222211 1 012 35
Q ss_pred eeeeccccCCCCCcch----hhhccCCcCcEEEeccCccceE
Q 038551 219 QCLCLRHLNNSNSLSV----FAFASLRHLRTLQLYFNDLEEL 256 (366)
Q Consensus 219 ~~L~~~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~l 256 (366)
+.|++..+. +++... ..+..+++|+++++++|.+...
T Consensus 253 ~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 253 LTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred eEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 556666543 221111 2344556788888888876644
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.20 E-value=3.7e-11 Score=121.30 Aligned_cols=324 Identities=21% Similarity=0.236 Sum_probs=186.7
Q ss_pred CCccEEEecCCCcccCCCCCCCCcccEEEcccCC--ccccCCC--CCCCCccEEEccCC-CCccccchhhcCCCCCCEEE
Q 038551 12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNA--IQNLTEI--PTCPRLRTLFLPSN-HLGTVSNNFFHSMASLRVLI 86 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~l~~~--~~~~~L~~L~l~~~-~~~~i~~~~~~~l~~L~~L~ 86 (366)
...+.++.-++.+..++.-..+++|++|-+.+|. +..++.. ..++.|++||+++| .++.+|.+ ++.+-+||+|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-Hhhhhhhhccc
Confidence 3456777777888888777777899999999885 6666553 78999999999988 67889988 89999999999
Q ss_pred ccCCCCCCCcchhhcCCCCCcEEEccccc-cccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551 87 LSYNRSLENLPLGIFNLVSLQHLDISWTG-ITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN 165 (366)
Q Consensus 87 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 165 (366)
++++ .+..+|..++++..|.+|++..+. ...+|.....+++|++|.+... ..... ...+..+.+|++|..-.+...
T Consensus 602 L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s-~~~~~-~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 602 LSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS-ALSND-KLLLKELENLEHLENLSITIS 678 (889)
T ss_pred ccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc-ccccc-hhhHHhhhcccchhhheeecc
Confidence 9999 889999999999999999999985 4455666677999999999873 22211 111334444444433332222
Q ss_pred cc---cccccc------------ccCCchhhhhhhhcCcccceeeeccccchhhHh-H-hhhcc---cCcccceeeeccc
Q 038551 166 VE---LEADSI------------LFGDSEVLVEELLVLKHLNLLTITLQSFGALQR-L-LSYCR---LGSISTQCLCLRH 225 (366)
Q Consensus 166 ~~---~~~~~~------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-l-~~~~~---l~~l~l~~L~~~~ 225 (366)
.. -.+... ........+..+..+.+|+.|.+.......+.. + ..... ++ .+..+.+.+
T Consensus 679 s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~--~l~~~~~~~ 756 (889)
T KOG4658|consen 679 SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP--NLSKVSILN 756 (889)
T ss_pred hhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH--HHHHHHhhc
Confidence 21 000000 001122334455666777777776665543211 0 00000 10 122344444
Q ss_pred cCCCCCcchhhhccCCcCcEEEeccC-ccceEeccccccccccccCCCCCcceeeeecccceeEE-ee--ccCccccc--
Q 038551 226 LNNSNSLSVFAFASLRHLRTLQLYFN-DLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARD-MA--CTCSQYQA-- 299 (366)
Q Consensus 226 ~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~-l~--~~c~~l~~-- 299 (366)
|.......+ .-..++|+.|.+..| .++++..... .+..+..+.+...+++.+. +. .+.+.+..
T Consensus 757 ~~~~r~l~~--~~f~~~L~~l~l~~~~~~e~~i~~~k---------~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~ 825 (889)
T KOG4658|consen 757 CHMLRDLTW--LLFAPHLTSLSLVSCRLLEDIIPKLK---------ALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP 825 (889)
T ss_pred cccccccch--hhccCcccEEEEecccccccCCCHHH---------HhhhcccEEecccccccceeeecCCCCceeEecc
Confidence 444444432 234679999999998 4444332211 1111221111111111111 11 01111111
Q ss_pred --cccccceEEeecCcccCCcccccccCCCCCCC---CceEEEeechhcccccccccccccccc
Q 038551 300 --CPRGLTKFEEHPLKRLECAELKELPLDCNHGL---EQKIIIKGQEHWWNELQWDDLSTQNAF 358 (366)
Q Consensus 300 --~~~~L~~L~l~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~ 358 (366)
+|+ |+.+.+ ..||++..++....... +.......+..|.+.+.|.+..++..|
T Consensus 826 l~~~~-l~~~~v-----e~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 826 LSFLK-LEELIV-----EECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred cCccc-hhheeh-----hcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 555 666664 55555555554433211 122333445567778888888887776
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=5.8e-11 Score=96.93 Aligned_cols=124 Identities=25% Similarity=0.318 Sum_probs=57.8
Q ss_pred CCccEEEecCCCcccCCCCC-CCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCC
Q 038551 12 EKENFLVLAGVGLTEAPSIG-MWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN 90 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~ 90 (366)
.+.+.+++.++.+..+..++ .+.+|+.|++++|.++.+.....+++|++|++++|.++++.+.+...+++|++|++++|
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence 45677899999999997777 58899999999999999987788999999999999999987663457999999999999
Q ss_pred CCCCCcc--hhhcCCCCCcEEEccccccccccc----cccCCCCCCEEEccc
Q 038551 91 RSLENLP--LGIFNLVSLQHLDISWTGITTLPI----ELKYLVNLKCLNLEY 136 (366)
Q Consensus 91 ~~~~~l~--~~~~~l~~L~~L~l~~~~~~~l~~----~l~~l~~L~~L~l~~ 136 (366)
.+..+. ..+..+++|++|++.+|.+...+. .+..+|+|+.||-..
T Consensus 99 -~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 99 -KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp ----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred -cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 555443 346789999999999999885543 368899999998765
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.8e-11 Score=107.09 Aligned_cols=112 Identities=21% Similarity=0.170 Sum_probs=80.1
Q ss_pred hcCCCCCCEEEccCCCCCCCcc--hhhcCCCCCcEEEccccccc---cccccccCCCCCCEEEcccccccCccChhhhcC
Q 038551 76 FHSMASLRVLILSYNRSLENLP--LGIFNLVSLQHLDISWTGIT---TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISD 150 (366)
Q Consensus 76 ~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~---~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 150 (366)
-.++.+|+++.+.++ .+...+ .....+++++.|||++|-+. .+-.....+++|+.|+++.|...-......-.-
T Consensus 117 Qsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 356788888888887 556555 24567889999999988665 333456788999999999864444433332335
Q ss_pred CcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeecccc
Q 038551 151 LKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQS 200 (366)
Q Consensus 151 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 200 (366)
++.|+.|.++.|.++. .....-+..++.|+.|.+..|.
T Consensus 196 l~~lK~L~l~~CGls~------------k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSW------------KDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hhhhheEEeccCCCCH------------HHHHHHHHhCCcHHHhhhhccc
Confidence 6788999999999885 3455555677888888888775
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=5.8e-11 Score=106.57 Aligned_cols=162 Identities=19% Similarity=0.137 Sum_probs=107.2
Q ss_pred CCCCCcccEEEcccCCccccCC--C-CCCCCccEEEccCCCCccc--cchhhcCCCCCCEEEccCCCCCCCcchh-hcCC
Q 038551 30 IGMWKETTRMSLMQNAIQNLTE--I-PTCPRLRTLFLPSNHLGTV--SNNFFHSMASLRVLILSYNRSLENLPLG-IFNL 103 (366)
Q Consensus 30 ~~~~~~L~~L~l~~~~~~~l~~--~-~~~~~L~~L~l~~~~~~~i--~~~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l 103 (366)
-+++.+|+.+.+.++.+...+. - ..|++++.|+++.|-|..+ -..+...+|+|+.|+++.|+......+. -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 4557788888888888777664 2 7888888888888855432 1233567888888888888433322221 1356
Q ss_pred CCCcEEEccccccc--cccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhh
Q 038551 104 VSLQHLDISWTGIT--TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVL 181 (366)
Q Consensus 104 ~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
++|+.|.++.|+++ .+...+..+++|+.|++.+|..+...... ...++.|++|++.+|.+.+ ...
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~------------~~~ 263 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID------------FDQ 263 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc------------ccc
Confidence 78888888888776 44445667788888888886433322222 4456678888888887764 233
Q ss_pred hhhhhcCcccceeeeccccchhh
Q 038551 182 VEELLVLKHLNLLTITLQSFGAL 204 (366)
Q Consensus 182 ~~~l~~l~~L~~L~l~~~~~~~~ 204 (366)
......++.|+.|+++.+++.++
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred ccccccccchhhhhccccCcchh
Confidence 45556677777777776666544
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=1.3e-09 Score=102.39 Aligned_cols=192 Identities=29% Similarity=0.374 Sum_probs=99.5
Q ss_pred EEcccCCc-cccCCCCCCCCccEEEccCCCCccccchhhcCCC-CCCEEEccCCCCCCCcchhhcCCCCCcEEEcccccc
Q 038551 39 MSLMQNAI-QNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMA-SLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGI 116 (366)
Q Consensus 39 L~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~-~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 116 (366)
+....+.+ ...........+..+++.++.+.++++. ...+. +|+.|++++| .+..+|..++.+++|+.|+++.|.+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchh
Confidence 45555544 2222223445566666666666666554 33342 6666666666 5555554456666666666666666
Q ss_pred ccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeee
Q 038551 117 TTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTI 196 (366)
Q Consensus 117 ~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 196 (366)
..+|...+.++.|+.|++++ +.+..+|.. +.....|+++.+.+|... ..+..+..+..+..+.+
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~-~~~~~~L~~l~~~~N~~~--------------~~~~~~~~~~~l~~l~l 239 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSG-NKISDLPPE-IELLSALEELDLSNNSII--------------ELLSSLSNLKNLSGLEL 239 (394)
T ss_pred hhhhhhhhhhhhhhheeccC-CccccCchh-hhhhhhhhhhhhcCCcce--------------ecchhhhhccccccccc
Confidence 66665544666666666666 556666553 344445666666666422 23444455555555555
Q ss_pred ccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccce
Q 038551 197 TLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEE 255 (366)
Q Consensus 197 ~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 255 (366)
..|....++.. ...+.. +..|+++.... ...+ .++...+++.|+++++.+..
T Consensus 240 ~~n~~~~~~~~--~~~l~~--l~~L~~s~n~i-~~i~--~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 240 SNNKLEDLPES--IGNLSN--LETLDLSNNQI-SSIS--SLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred CCceeeeccch--hccccc--cceeccccccc-cccc--cccccCccCEEeccCccccc
Confidence 55554432111 111111 22343333221 1111 15566677777777764443
No 31
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.84 E-value=3.2e-10 Score=101.32 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=21.4
Q ss_pred cceEEeecCc---------ccCCcccccccCCCCCC
Q 038551 304 LTKFEEHPLK---------RLECAELKELPLDCNHG 330 (366)
Q Consensus 304 L~~L~l~~~~---------~~~~~~L~~L~l~~n~~ 330 (366)
|+.++++++| +..|++|+++++-++..
T Consensus 403 l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 403 LEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 8888888888 77888888887776654
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.83 E-value=2.8e-09 Score=100.13 Aligned_cols=178 Identities=25% Similarity=0.336 Sum_probs=125.5
Q ss_pred EEecCCCc-ccCCCCCCCCcccEEEcccCCccccCCC-CCCC-CccEEEccCCCCccccchhhcCCCCCCEEEccCCCCC
Q 038551 17 LVLAGVGL-TEAPSIGMWKETTRMSLMQNAIQNLTEI-PTCP-RLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL 93 (366)
Q Consensus 17 ~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~-~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~ 93 (366)
+....+.+ ..+..+...+.++.|++.++.+..++.. .... +|+.|++++|.+..++.. +..+++|+.|++++| .+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hh
Confidence 44445554 4444455557788888888888888777 4443 888888888888887644 677888888888888 77
Q ss_pred CCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccccccc
Q 038551 94 ENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSI 173 (366)
Q Consensus 94 ~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 173 (366)
..+|...+..+.|+.|++++|.++.+|.....+..|+++.++++. ....+.. +.++.++..+.+.+|++.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~-------- 245 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE-------- 245 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee--------
Confidence 778776667888888888888888888766666778888888743 3333333 667777777777777665
Q ss_pred ccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcc
Q 038551 174 LFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCR 212 (366)
Q Consensus 174 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~ 212 (366)
..+..+..+..++.|+++.|.+..++.+....+
T Consensus 246 ------~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~ 278 (394)
T COG4886 246 ------DLPESIGNLSNLETLDLSNNQISSISSLGSLTN 278 (394)
T ss_pred ------eccchhccccccceeccccccccccccccccCc
Confidence 224556667778888888887777666433333
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=1.3e-10 Score=107.61 Aligned_cols=168 Identities=28% Similarity=0.374 Sum_probs=108.2
Q ss_pred EecCCCcccCC-CCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCC
Q 038551 18 VLAGVGLTEAP-SIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLEN 95 (366)
Q Consensus 18 ~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~ 95 (366)
++..+.+..+| ....|..|..+.+..|.+..+|.. ..+..|.+++++.|.++.+|..++ .-=|++|.+++| +++.
T Consensus 81 DlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC--~lpLkvli~sNN-kl~~ 157 (722)
T KOG0532|consen 81 DLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC--DLPLKVLIVSNN-KLTS 157 (722)
T ss_pred hccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh--cCcceeEEEecC-cccc
Confidence 44444455553 233344555556666666665555 566666677777777766666522 234677777777 6777
Q ss_pred cchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccccccccc
Q 038551 96 LPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILF 175 (366)
Q Consensus 96 l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 175 (366)
+|..++....|..|+.+.|.+..+|..++.+.+|+.|++.. +.+..+|.+ ...+ .|..|+++.|++.
T Consensus 158 lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~L-pLi~lDfScNkis---------- 224 (722)
T KOG0532|consen 158 LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSL-PLIRLDFSCNKIS---------- 224 (722)
T ss_pred CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCC-ceeeeecccCcee----------
Confidence 77777766777777777777777777777777777777777 566666666 4433 4777777777776
Q ss_pred CCchhhhhhhhcCcccceeeeccccchhhH
Q 038551 176 GDSEVLVEELLVLKHLNLLTITLQSFGALQ 205 (366)
Q Consensus 176 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 205 (366)
.++-.+..|.+|++|.+.+|...+.|
T Consensus 225 ----~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 225 ----YLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred ----ecchhhhhhhhheeeeeccCCCCCCh
Confidence 45666677777777777777776543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=1.7e-09 Score=92.90 Aligned_cols=134 Identities=23% Similarity=0.177 Sum_probs=91.0
Q ss_pred CCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhh
Q 038551 102 NLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVL 181 (366)
Q Consensus 102 ~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
..+.|.++|+++|.++.+.+++.-+++++.|++++ |.+..+.. ++.+++|.+|++++|.++. .
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~n--La~L~~L~~LDLS~N~Ls~--------------~ 344 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTVQN--LAELPQLQLLDLSGNLLAE--------------C 344 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccc-cceeeehh--hhhcccceEeecccchhHh--------------h
Confidence 34668888888888888887777888888888888 56666554 6778888888888887763 2
Q ss_pred hhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEe
Q 038551 182 VEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELK 257 (366)
Q Consensus 182 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~ 257 (366)
..--..+.+++.|.+++|.+..+..+..+.++.+ |++++..--.-..+..++++|-|+.+.+.+|.+..++
T Consensus 345 ~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvn-----LDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 345 VGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVN-----LDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhHhhhcCEeeeehhhhhHhhhhhhHhhhhhee-----ccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 2222346677788888888877777666665444 4444322212222344777888888888888766554
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=1.7e-09 Score=92.90 Aligned_cols=117 Identities=21% Similarity=0.135 Sum_probs=53.9
Q ss_pred CCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEe
Q 038551 80 ASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRM 159 (366)
Q Consensus 80 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 159 (366)
+.|+++|+++| .++.+-+++.-.+.++.|++++|.+..+.. +..+++|++||+++ |.+..+..- -.++.+++.|.+
T Consensus 284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gw-h~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGW-HLKLGNIKTLKL 359 (490)
T ss_pred hhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhh-HhhhcCEeeeeh
Confidence 34555555555 444444444444555555555555554433 44555555555555 333333221 123444555555
Q ss_pred ecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCc
Q 038551 160 FECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGS 215 (366)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~ 215 (366)
.+|.+. ..++++.+-.|..|++++|.+..+..+..+.+++-
T Consensus 360 a~N~iE---------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 360 AQNKIE---------------TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC 400 (490)
T ss_pred hhhhHh---------------hhhhhHhhhhheeccccccchhhHHHhcccccccH
Confidence 555442 23444444444455555555554444444444333
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.73 E-value=1.7e-09 Score=100.39 Aligned_cols=141 Identities=21% Similarity=0.281 Sum_probs=126.2
Q ss_pred CCCcccC-CCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchh
Q 038551 21 GVGLTEA-PSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLG 99 (366)
Q Consensus 21 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~ 99 (366)
.+.+..+ +.+..+..|+.++++.|++..+|.....--|++|.+++|+++.+|+. ++..++|..||.+.| .+..+|+.
T Consensus 107 ~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsq 184 (722)
T KOG0532|consen 107 HNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQ 184 (722)
T ss_pred hccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchHH
Confidence 4455556 46888899999999999999998876667799999999999999999 778999999999999 78889999
Q ss_pred hcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551 100 IFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 100 ~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
++++..|+.|.+..|++..+|..+. .-.|..||++. |.+..+|.. |.++..|++|.+..|.+..
T Consensus 185 l~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfSc-Nkis~iPv~-fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSC-NKISYLPVD-FRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeeccc-Cceeecchh-hhhhhhheeeeeccCCCCC
Confidence 9999999999999999999999888 55699999996 899999998 9999999999999999875
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.68 E-value=2.9e-09 Score=95.32 Aligned_cols=270 Identities=16% Similarity=0.109 Sum_probs=143.4
Q ss_pred cccEEEcccCCccc---cCCC-CCCCCccEEEccCC-CCccc-cchhhcCCCCCCEEEccCCCCCCCcc--hhhcCCCCC
Q 038551 35 ETTRMSLMQNAIQN---LTEI-PTCPRLRTLFLPSN-HLGTV-SNNFFHSMASLRVLILSYNRSLENLP--LGIFNLVSL 106 (366)
Q Consensus 35 ~L~~L~l~~~~~~~---l~~~-~~~~~L~~L~l~~~-~~~~i-~~~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L 106 (366)
.|+.|++.++.=.. +... ..|++++.|.+.+| .+++. -.++-..|++|+.+++..|..++... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46677777663332 2222 67777777777777 33321 11223457777777777764444322 122456777
Q ss_pred cEEEcccc-cccc--ccccccCCCCCCEEEcccccccCccChh-hhcCCcCCcEEEeecCCccccccccccccCCchhhh
Q 038551 107 QHLDISWT-GITT--LPIELKYLVNLKCLNLEYTFRLSRIPQQ-VISDLKMLRALRMFECGFNVELEADSILFGDSEVLV 182 (366)
Q Consensus 107 ~~L~l~~~-~~~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (366)
.++++++| .++. +.....+++.++.+...+|...+.-... .-+.+..+.++++..|.... ++...
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT-----------D~~~~ 287 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT-----------DEDLW 287 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc-----------chHHH
Confidence 77777776 3432 2222445555666655555332221110 01133334455544553222 23334
Q ss_pred hhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhc-cCCcCcEEEeccC-ccceEeccc
Q 038551 183 EELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFA-SLRHLRTLQLYFN-DLEELKIDA 260 (366)
Q Consensus 183 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~l~~l~~~~ 260 (366)
..-..+..|+.+..++.....-..+..+..-.. .+..+.+..|...++..+..++ ++++|+.+++..+ ...+-....
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~-~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCH-NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC-ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence 444455666666665543332222222222222 4566666666665555543343 4567777777666 222211111
Q ss_pred cccccccccCCCCCcceeeee-------------------cccceeEEeeccCccccc--------cccccceEEeecCc
Q 038551 261 GELKRIREICGFHSLQKVFYK-------------------ILKIEARDMACTCSQYQA--------CPRGLTKFEEHPLK 313 (366)
Q Consensus 261 ~~~~~~~~~~~~~~L~~L~l~-------------------l~~l~~L~l~~~c~~l~~--------~~~~L~~L~l~~~~ 313 (366)
.. .+++.|+.+.++ ...++.+.++ +|+.+++ .++ ||.+++-++.
T Consensus 367 ls-------~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~-n~p~i~d~~Le~l~~c~~-Leri~l~~~q 437 (483)
T KOG4341|consen 367 LS-------RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD-NCPLITDATLEHLSICRN-LERIELIDCQ 437 (483)
T ss_pred hc-------cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeec-CCCCchHHHHHHHhhCcc-cceeeeechh
Confidence 11 556777777766 2334677888 8887766 677 9999888877
Q ss_pred ----------ccCCcccccccC
Q 038551 314 ----------RLECAELKELPL 325 (366)
Q Consensus 314 ----------~~~~~~L~~L~l 325 (366)
...||+++...+
T Consensus 438 ~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 438 DVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhhhhHHHHhhCccceehhh
Confidence 567888776554
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.68 E-value=5e-08 Score=85.65 Aligned_cols=215 Identities=18% Similarity=0.142 Sum_probs=143.8
Q ss_pred CCCCCCCcccEEEcccCCccc-----cCCC-CCCCCccEEEccCCCCc----cccch------hhcCCCCCCEEEccCCC
Q 038551 28 PSIGMWKETTRMSLMQNAIQN-----LTEI-PTCPRLRTLFLPSNHLG----TVSNN------FFHSMASLRVLILSYNR 91 (366)
Q Consensus 28 ~~~~~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~----~i~~~------~~~~l~~L~~L~l~~~~ 91 (366)
+....+..++.+++++|.|-. +... ...+.|+..++++--.+ .+|+. ++..+++|++++|++|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 556677899999999998764 3222 56668999988875222 34432 24567899999999994
Q ss_pred CCCCcc----hhhcCCCCCcEEEcccccccccc--------------ccccCCCCCCEEEcccccccCccChh----hhc
Q 038551 92 SLENLP----LGIFNLVSLQHLDISWTGITTLP--------------IELKYLVNLKCLNLEYTFRLSRIPQQ----VIS 149 (366)
Q Consensus 92 ~~~~l~----~~~~~l~~L~~L~l~~~~~~~l~--------------~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~ 149 (366)
+...-+ .-+.++..|++|.|.+|++.... ....+-++|+++..++ |.+.+.+.. .+.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQ 182 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHH
Confidence 433322 33567899999999999886221 1246778999999998 677666643 355
Q ss_pred CCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHh---hhcccCcccceeeecccc
Q 038551 150 DLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLL---SYCRLGSISTQCLCLRHL 226 (366)
Q Consensus 150 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~---~~~~l~~l~l~~L~~~~~ 226 (366)
..+.|+.+.+..|.+..+ +......++..+++|+.|++..|.++.-.... .++.++. ++.++++.|
T Consensus 183 ~~~~leevr~~qN~I~~e---------G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~--L~El~l~dc 251 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPE---------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH--LRELNLGDC 251 (382)
T ss_pred hccccceEEEecccccCc---------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch--heeeccccc
Confidence 678999999999998862 23456788889999999999999876422211 1222222 555666665
Q ss_pred CCCCCcchh---hh-ccCCcCcEEEeccCccc
Q 038551 227 NNSNSLSVF---AF-ASLRHLRTLQLYFNDLE 254 (366)
Q Consensus 227 ~~~~~~~~~---~l-~~~~~L~~L~l~~~~l~ 254 (366)
.-.+....+ ++ ...|.|+.+.+.+|.++
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 433333221 12 23567777777777555
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.65 E-value=2.5e-08 Score=66.93 Aligned_cols=58 Identities=33% Similarity=0.444 Sum_probs=27.2
Q ss_pred CccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccccc
Q 038551 57 RLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWTG 115 (366)
Q Consensus 57 ~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~ 115 (366)
+|++|++++|.+..+++++|..+++|++|++++| .++.++ ..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4444555555555554444455555555555544 333333 234444444444444443
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=2.1e-08 Score=86.25 Aligned_cols=232 Identities=16% Similarity=0.106 Sum_probs=140.0
Q ss_pred CcccEEEcccCCccccCCC----CCCCCccEEEccCCCCccccc--hhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 038551 34 KETTRMSLMQNAIQNLTEI----PTCPRLRTLFLPSNHLGTVSN--NFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQ 107 (366)
Q Consensus 34 ~~L~~L~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~i~~--~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 107 (366)
..+.-+.+.++.|...... ..+..++.+++.+|.|++..+ .++..+|.|++|+++.|+....+-..--...+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 3455667777777664433 678899999999998875433 3477899999999999954333322112467899
Q ss_pred EEEccccccc--cccccccCCCCCCEEEcccccccC--ccChhhhcC-CcCCcEEEeecCCccccccccccccCCchhhh
Q 038551 108 HLDISWTGIT--TLPIELKYLVNLKCLNLEYTFRLS--RIPQQVISD-LKMLRALRMFECGFNVELEADSILFGDSEVLV 182 (366)
Q Consensus 108 ~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (366)
.|-+.++++. ...+.+..++.++.|+++.|+.-. ..... +.. .+.++++++.+|.... +....
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c-~e~~s~~v~tlh~~~c~~~~-----------w~~~~ 192 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNC-IEDWSTEVLTLHQLPCLEQL-----------WLNKN 192 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccc-ccccchhhhhhhcCCcHHHH-----------HHHHH
Confidence 9999998664 566668889999999999852211 11111 122 2467788887776542 22222
Q ss_pred hhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccc
Q 038551 183 EELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGE 262 (366)
Q Consensus 183 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~ 262 (366)
.--.-.+++..+.+..+.+.....-.....++.+....|.-+++.. ..++.++.+++.|..|.++.+.+.+--.. +
T Consensus 193 ~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~ids--wasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~ 268 (418)
T KOG2982|consen 193 KLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDS--WASVDALNGFPQLVDLRVSENPLSDPLRG--G 268 (418)
T ss_pred hHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccccccc--HHHHHHHcCCchhheeeccCCcccccccC--C
Confidence 2223457788777777655443332223333333332333333333 33344688999999999999966543221 2
Q ss_pred cccccccCCCCCcceeeee
Q 038551 263 LKRIREICGFHSLQKVFYK 281 (366)
Q Consensus 263 ~~~~~~~~~~~~L~~L~l~ 281 (366)
++..+-+..+++++.|+=+
T Consensus 269 err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 269 ERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cceEEEEeeccceEEecCc
Confidence 3333333666777766543
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.62 E-value=4.5e-08 Score=65.65 Aligned_cols=57 Identities=28% Similarity=0.410 Sum_probs=53.5
Q ss_pred CcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCC
Q 038551 34 KETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN 90 (366)
Q Consensus 34 ~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~ 90 (366)
++|+.|++++|.++.++.. ..+++|++|++++|.+..+++++|..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 5799999999999998866 88999999999999999999988999999999999998
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.58 E-value=2.6e-08 Score=84.66 Aligned_cols=231 Identities=18% Similarity=0.132 Sum_probs=126.4
Q ss_pred CCCCccEEEccCCCCccc----cchhhcCCCCCCEEEccCCCCCC----Ccc-------hhhcCCCCCcEEEccccccc-
Q 038551 54 TCPRLRTLFLPSNHLGTV----SNNFFHSMASLRVLILSYNRSLE----NLP-------LGIFNLVSLQHLDISWTGIT- 117 (366)
Q Consensus 54 ~~~~L~~L~l~~~~~~~i----~~~~~~~l~~L~~L~l~~~~~~~----~l~-------~~~~~l~~L~~L~l~~~~~~- 117 (366)
.+..+..+++++|.|+.- -...+.+-.+|++.+++.- +.+ .++ .++-+|++|+..++++|.+.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 355666677777766521 1122445566777777665 433 122 23456778888888888665
Q ss_pred cccc----cccCCCCCCEEEcccccccCccChhh-------------hcCCcCCcEEEeecCCccccccccccccCCchh
Q 038551 118 TLPI----ELKYLVNLKCLNLEYTFRLSRIPQQV-------------ISDLKMLRALRMFECGFNVELEADSILFGDSEV 180 (366)
Q Consensus 118 ~l~~----~l~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 180 (366)
+.|+ -+++-+.|.+|.+++ +.++.+..+- .++-+.|+.+...+|.+.. +....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~N-nGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen---------gs~~~ 176 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNN-NGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN---------GSKEL 176 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeec-CCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc---------CcHHH
Confidence 3333 256777888888887 4655554321 2345678888888887664 11223
Q ss_pred hhhhhhcCcccceeeeccccchh--hHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEec
Q 038551 181 LVEELLVLKHLNLLTITLQSFGA--LQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKI 258 (366)
Q Consensus 181 ~~~~l~~l~~L~~L~l~~~~~~~--~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~ 258 (366)
....+.++..|+.+.+.+|++.. +..+. ...+..+.+|+.|++.+|.++....
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~-------------------------~~gl~y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLA-------------------------FLGLFYSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHH-------------------------HHHHHHhCcceeeeccccchhhhhH
Confidence 34455566778888887776652 21111 1124556667777777765554332
Q ss_pred cccccccccccCCCCCcceeeee--cccceeEEeeccCcccc------ccccccceEEeecCc---------------cc
Q 038551 259 DAGELKRIREICGFHSLQKVFYK--ILKIEARDMACTCSQYQ------ACPRGLTKFEEHPLK---------------RL 315 (366)
Q Consensus 259 ~~~~~~~~~~~~~~~~L~~L~l~--l~~l~~L~l~~~c~~l~------~~~~~L~~L~l~~~~---------------~~ 315 (366)
...+ ..+ +..+.|+.|.+. +.+. . +...+- .+|+ |..|...+|- -.
T Consensus 232 ~~La--~al--~~W~~lrEL~lnDClls~-----~-G~~~v~~~f~e~~~p~-l~~L~~~Yne~~~~~i~~~~l~~~e~~ 300 (388)
T COG5238 232 RYLA--DAL--CEWNLLRELRLNDCLLSN-----E-GVKSVLRRFNEKFVPN-LMPLPGDYNERRGGIILDISLNEFEQD 300 (388)
T ss_pred HHHH--HHh--cccchhhhccccchhhcc-----c-cHHHHHHHhhhhcCCC-ccccccchhhhcCceeeeechhhhhhc
Confidence 2211 001 334556666554 1110 0 111110 0455 5555555544 35
Q ss_pred CCcccccccCCCCCCC
Q 038551 316 ECAELKELPLDCNHGL 331 (366)
Q Consensus 316 ~~~~L~~L~l~~n~~~ 331 (366)
++|.|..|.+.||.+.
T Consensus 301 ~~p~L~~le~ngNr~~ 316 (388)
T COG5238 301 AVPLLVDLERNGNRIK 316 (388)
T ss_pred ccHHHHHHHHccCcch
Confidence 6788888888888875
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=3.5e-07 Score=90.52 Aligned_cols=84 Identities=25% Similarity=0.318 Sum_probs=41.8
Q ss_pred CCEEEccCCCCCCCcchhhcCCCCCcEEEccccccc-cccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEee
Q 038551 82 LRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGIT-TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMF 160 (366)
Q Consensus 82 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 160 (366)
++.|+|++|...+.+|..+..+++|++|++++|.+. .+|..++.+++|+.|++++|+..+.+|.. +.++++|+.|++.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence 444555555333344544555555555555555444 44444555555555555554444444443 4455555555555
Q ss_pred cCCccc
Q 038551 161 ECGFNV 166 (366)
Q Consensus 161 ~~~~~~ 166 (366)
+|.+.+
T Consensus 499 ~N~l~g 504 (623)
T PLN03150 499 GNSLSG 504 (623)
T ss_pred CCcccc
Confidence 555443
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.49 E-value=1.4e-08 Score=95.81 Aligned_cols=127 Identities=28% Similarity=0.362 Sum_probs=59.7
Q ss_pred CCcccEEEcccCCccccCC-CCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 038551 33 WKETTRMSLMQNAIQNLTE-IPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDI 111 (366)
Q Consensus 33 ~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 111 (366)
+..+..+.+..|.+..... ...+.+|+.+++.+|.|..+... +..+++|++|++++| .++.+.. +..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-ccccccc-hhhccchhhhee
Confidence 3444444444444444222 24455555555555555544432 344555555555555 4444332 334444555555
Q ss_pred cccccccccccccCCCCCCEEEcccccccCccCh-hhhcCCcCCcEEEeecCCcc
Q 038551 112 SWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQ-QVISDLKMLRALRMFECGFN 165 (366)
Q Consensus 112 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 165 (366)
.+|.+..+.. +..++.|+.+++++ +.+..+.. . ...+.+++.+.+.+|.+.
T Consensus 148 ~~N~i~~~~~-~~~l~~L~~l~l~~-n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 148 SGNLISDISG-LESLKSLKLLDLSY-NRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCcchhccC-CccchhhhcccCCc-chhhhhhhhh-hhhccchHHHhccCCchh
Confidence 5555554432 33355555555555 33333332 1 134445555555555443
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.46 E-value=6.5e-07 Score=88.68 Aligned_cols=106 Identities=24% Similarity=0.308 Sum_probs=82.0
Q ss_pred CccEEEccCCCCc-cccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccc-cccccccCCCCCCEEEc
Q 038551 57 RLRTLFLPSNHLG-TVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGIT-TLPIELKYLVNLKCLNL 134 (366)
Q Consensus 57 ~L~~L~l~~~~~~-~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l 134 (366)
.++.|++++|.+. .+|.. +..+++|+.|++++|...+.+|..++.+++|++|++++|.+. .+|..++.+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4677888888775 55655 788888888888888555678888888888888888888887 67777888888888888
Q ss_pred ccccccCccChhhhcC-CcCCcEEEeecCCc
Q 038551 135 EYTFRLSRIPQQVISD-LKMLRALRMFECGF 164 (366)
Q Consensus 135 ~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~ 164 (366)
++|+..+.+|.. +.. ..++..+++.+|..
T Consensus 498 s~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCChH-HhhccccCceEEecCCcc
Confidence 887777788876 443 34567777777753
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.4e-08 Score=87.27 Aligned_cols=179 Identities=18% Similarity=0.081 Sum_probs=92.7
Q ss_pred CCCEEEccCCCCCC--CcchhhcCCCCCcEEEccccccc-cccccccCCCCCCEEEcccccccCccChh-hhcCCcCCcE
Q 038551 81 SLRVLILSYNRSLE--NLPLGIFNLVSLQHLDISWTGIT-TLPIELKYLVNLKCLNLEYTFRLSRIPQQ-VISDLKMLRA 156 (366)
Q Consensus 81 ~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~ 156 (366)
.||.+|+++. .++ .+...+..|.+|+.|.+.++.+. .+...+..-.+|+.+++++|+.++..... .+.+++.|.+
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3666666665 333 12222345566666666666554 23333455566777777776666655432 2446667777
Q ss_pred EEeecCCccccccccccccCCchhhhhhhhc-Ccccceeeeccccch-hhHhHhhhcccCcccceeeeccccCCCCCcch
Q 038551 157 LRMFECGFNVELEADSILFGDSEVLVEELLV-LKHLNLLTITLQSFG-ALQRLLSYCRLGSISTQCLCLRHLNNSNSLSV 234 (366)
Q Consensus 157 L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~-~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~ 234 (366)
|+++.|....+ ..--.... -++|..|++++.... +...+..+..-+. ++.+|+++++..+.+.-.
T Consensus 265 LNlsWc~l~~~------------~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp-~l~~LDLSD~v~l~~~~~ 331 (419)
T KOG2120|consen 265 LNLSWCFLFTE------------KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP-NLVHLDLSDSVMLKNDCF 331 (419)
T ss_pred cCchHhhccch------------hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC-ceeeeccccccccCchHH
Confidence 77777665531 11111111 145666666654322 1112222222222 466677777766666444
Q ss_pred hhhccCCcCcEEEeccC-ccceEeccccccccccccCCCCCcceeeee
Q 038551 235 FAFASLRHLRTLQLYFN-DLEELKIDAGELKRIREICGFHSLQKVFYK 281 (366)
Q Consensus 235 ~~l~~~~~L~~L~l~~~-~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 281 (366)
-.+.+++.|++|.++.| .+.- ...+-..+.|.|..|++.
T Consensus 332 ~~~~kf~~L~~lSlsRCY~i~p--------~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 332 QEFFKFNYLQHLSLSRCYDIIP--------ETLLELNSKPSLVYLDVF 371 (419)
T ss_pred HHHHhcchheeeehhhhcCCCh--------HHeeeeccCcceEEEEec
Confidence 45667777777777777 4331 011111445667777664
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.5e-08 Score=85.81 Aligned_cols=176 Identities=22% Similarity=0.153 Sum_probs=118.0
Q ss_pred CCCcEEEccccccc--cccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCC-ccccccccccccCCchh
Q 038551 104 VSLQHLDISWTGIT--TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECG-FNVELEADSILFGDSEV 180 (366)
Q Consensus 104 ~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~ 180 (366)
..|+++||+...++ .+...++.+.+|+.|.+.+...-..+... +++-.+|+.|+++.+. ++. ..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~------------n~ 251 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTE------------NA 251 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccch------------hH
Confidence 35899999998887 56666889999999999985555555555 7888899999998874 543 13
Q ss_pred hhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCC-Ccchhhh-ccCCcCcEEEeccC-ccceEe
Q 038551 181 LVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSN-SLSVFAF-ASLRHLRTLQLYFN-DLEELK 257 (366)
Q Consensus 181 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~-~~~~~~l-~~~~~L~~L~l~~~-~l~~l~ 257 (366)
.---++++..|..|++++.....-..-....+... .+..|+++++.... ...++.+ ..|++|.+||+++| .++.-.
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise-~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~ 330 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE-TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC 330 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch-hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence 33455788999999999987775443333445444 67778888775432 2234334 58999999999999 777522
Q ss_pred ccccccccccccCCCCCcceeeeecccceeEEeeccCccc--------cccccccceEEeecCc
Q 038551 258 IDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQY--------QACPRGLTKFEEHPLK 313 (366)
Q Consensus 258 ~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l--------~~~~~~L~~L~l~~~~ 313 (366)
...+ ..|+.|+.|.+ + -|..+ ...|. |.+|++.|+-
T Consensus 331 ~~~~--------~kf~~L~~lSl----------s-RCY~i~p~~~~~l~s~ps-l~yLdv~g~v 374 (419)
T KOG2120|consen 331 FQEF--------FKFNYLQHLSL----------S-RCYDIIPETLLELNSKPS-LVYLDVFGCV 374 (419)
T ss_pred HHHH--------Hhcchheeeeh----------h-hhcCCChHHeeeeccCcc-eEEEEecccc
Confidence 1111 33555555544 4 45432 22566 7777776664
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.40 E-value=3.3e-08 Score=93.34 Aligned_cols=140 Identities=22% Similarity=0.298 Sum_probs=97.1
Q ss_pred ecCCCcccC-CCCCCCCcccEEEcccCCccccCC-CCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc
Q 038551 19 LAGVGLTEA-PSIGMWKETTRMSLMQNAIQNLTE-IPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL 96 (366)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l 96 (366)
+..+.+..+ ..+..+.+++.|++.+|.++.+.. ...+++|++|++++|.|..+.. +..++.|+.|++.+| .+..+
T Consensus 79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~ 155 (414)
T KOG0531|consen 79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDI 155 (414)
T ss_pred cchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhc
Confidence 344445543 347778888888888888888877 5788888888888888888766 667778888888888 66655
Q ss_pred chhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551 97 PLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN 165 (366)
Q Consensus 97 ~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 165 (366)
.. +..++.|+.+++++|.+..+... ...+.+++.+++.+ +.+..+.. +..+..+..+++..|.+.
T Consensus 156 ~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~--~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 156 SG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG-NSIREIEG--LDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred cC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC-Cchhcccc--hHHHHHHHHhhcccccce
Confidence 54 45578888888888888877653 46778888888887 44444432 223333333344444443
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=1.3e-08 Score=97.23 Aligned_cols=29 Identities=17% Similarity=0.091 Sum_probs=19.4
Q ss_pred cCCCcccCCCCCCCCcccEEEcccCCccc
Q 038551 20 AGVGLTEAPSIGMWKETTRMSLMQNAIQN 48 (366)
Q Consensus 20 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 48 (366)
.+-+..+.-++..+..|++|.+.++++..
T Consensus 95 pa~~pt~pi~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 95 PARDPTEPISIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred CCCCCCCCceeccccceeeEEecCcchhh
Confidence 34444443356678889999988887664
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=3.1e-06 Score=73.18 Aligned_cols=163 Identities=13% Similarity=0.104 Sum_probs=101.4
Q ss_pred CCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchh-hHhHhhhcccCcccceeeeccccCC
Q 038551 150 DLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA-LQRLLSYCRLGSISTQCLCLRHLNN 228 (366)
Q Consensus 150 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~l~~~~~l~~l~l~~L~~~~~~~ 228 (366)
.++.++++++.+|.+++ +..+...+..+++|+.|+++.|...+ +..+. ..+.+|....|+.++..-
T Consensus 69 ~~~~v~elDL~~N~iSd-----------WseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w 135 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISD-----------WSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSW 135 (418)
T ss_pred Hhhhhhhhhcccchhcc-----------HHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCCh
Confidence 56788999999999987 77888899999999999999998774 22221 122333334444333322
Q ss_pred CCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeee----------------cccceeEEeec
Q 038551 229 SNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK----------------ILKIEARDMAC 292 (366)
Q Consensus 229 ~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~----------------l~~l~~L~l~~ 292 (366)
.... +.+...|.+++|+++.|+++.+-.+....+.|-| .+++|... +++++.+-+.
T Consensus 136 ~~~~--s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~-----~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~- 207 (418)
T KOG2982|consen 136 TQST--SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWST-----EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVC- 207 (418)
T ss_pred hhhh--hhhhcchhhhhhhhccchhhhhccccccccccch-----hhhhhhcCCcHHHHHHHHHhHHhhcccchheeee-
Confidence 2222 2356788999999999988877666665555542 22222221 3333333333
Q ss_pred cC--------ccccccccccceEEeecCc---------ccCCcccccccCCCCCCCCce
Q 038551 293 TC--------SQYQACPRGLTKFEEHPLK---------RLECAELKELPLDCNHGLEQK 334 (366)
Q Consensus 293 ~c--------~~l~~~~~~L~~L~l~~~~---------~~~~~~L~~L~l~~n~~~~~~ 334 (366)
.| .+.+.||. +-.|.|.-+. +.++++|+.|.++.+++.+.+
T Consensus 208 e~PlK~~s~ek~se~~p~-~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 208 EGPLKTESSEKGSEPFPS-LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cCcccchhhcccCCCCCc-chhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 33 23333666 6666666555 667788888888888876554
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=5.7e-07 Score=68.83 Aligned_cols=109 Identities=15% Similarity=0.225 Sum_probs=67.4
Q ss_pred ccEEEcccCCccccCCC----CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 038551 36 TTRMSLMQNAIQNLTEI----PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDI 111 (366)
Q Consensus 36 L~~L~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 111 (366)
+-.++++.|++..++.. .+-.+|...++++|.++++|+.+-..++.++.+++++| .+..+|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence 34455556655543333 34455666677777776666664445556777777776 66666666666677777777
Q ss_pred cccccccccccccCCCCCCEEEcccccccCccChh
Q 038551 112 SWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQ 146 (366)
Q Consensus 112 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~ 146 (366)
+.|.+...|+.+..+.+|..|+..+ +...+++..
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPE-NARAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCC-CccccCcHH
Confidence 7776666666665566666666665 455555543
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=1.2e-05 Score=49.65 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=4.4
Q ss_pred cEEEccCCCCccc
Q 038551 59 RTLFLPSNHLGTV 71 (366)
Q Consensus 59 ~~L~l~~~~~~~i 71 (366)
++|++++|.|+++
T Consensus 4 ~~L~l~~N~i~~l 16 (44)
T PF12799_consen 4 EELDLSNNQITDL 16 (44)
T ss_dssp SEEEETSSS-SSH
T ss_pred eEEEccCCCCccc
Confidence 3333333333333
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.96 E-value=2.4e-07 Score=88.68 Aligned_cols=127 Identities=24% Similarity=0.275 Sum_probs=68.1
Q ss_pred CccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcc
Q 038551 57 RLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLE 135 (366)
Q Consensus 57 ~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~ 135 (366)
.|.+.++++|.+..+..+ +.-++.|+.|+|++| ..+..- .+..+++|++||+++|.++.+|.. ...+. |+.|++.
T Consensus 165 ~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 344555555555555444 555666666666666 333332 355566666666666666655542 22333 6666666
Q ss_pred cccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551 136 YTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG 202 (366)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 202 (366)
+ |.++.+-. +.++.+|+.|+++.|-+.+ -.....+..+..|+.|.+.+|...
T Consensus 241 n-N~l~tL~g--ie~LksL~~LDlsyNll~~------------hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 N-NALTTLRG--IENLKSLYGLDLSYNLLSE------------HSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred c-cHHHhhhh--HHhhhhhhccchhHhhhhc------------chhhhHHHHHHHHHHHhhcCCccc
Confidence 5 45555433 5566666666666665543 133344444555555555555443
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.94 E-value=1.9e-05 Score=64.60 Aligned_cols=102 Identities=24% Similarity=0.352 Sum_probs=76.0
Q ss_pred cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcch--hhcCCCCCcEEEcc
Q 038551 35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPL--GIFNLVSLQHLDIS 112 (366)
Q Consensus 35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~ 112 (366)
....+++++|++..++..+++++|.+|.++.|+|..|.+..-..+++|..|.+.+| .+..+.+ .+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 45568888888888777788888899999998888888876666788888888888 4443321 24567888888888
Q ss_pred ccccccccc----cccCCCCCCEEEcccc
Q 038551 113 WTGITTLPI----ELKYLVNLKCLNLEYT 137 (366)
Q Consensus 113 ~~~~~~l~~----~l~~l~~L~~L~l~~~ 137 (366)
+|.++.-+. .+..+++|+.||+..-
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 888775443 3677788888887663
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=2.7e-05 Score=48.00 Aligned_cols=40 Identities=33% Similarity=0.442 Sum_probs=26.8
Q ss_pred CCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccccccccc
Q 038551 80 ASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120 (366)
Q Consensus 80 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~ 120 (366)
++|++|++++| .++.+|+.+.++++|++|++++|+++.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 35777777777 66667766777777777777777776554
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=9e-06 Score=80.74 Aligned_cols=129 Identities=22% Similarity=0.272 Sum_probs=63.1
Q ss_pred CcccEEEcccCCccc--cC-CC-CCCCCccEEEccCCCCc--cccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 038551 34 KETTRMSLMQNAIQN--LT-EI-PTCPRLRTLFLPSNHLG--TVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQ 107 (366)
Q Consensus 34 ~~L~~L~l~~~~~~~--l~-~~-~~~~~L~~L~l~~~~~~--~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 107 (366)
.+|++|++++...-. -+ .. ..+|.|+.|.+.+-.+. ++.. .+.++++|..||++++ .++.+ .+++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGT-NISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH-HhhccCccceeecCCC-CccCc-HHHhccccHH
Confidence 356666665542211 01 11 45566666666665442 1111 2455666666666666 44444 4456666666
Q ss_pred EEEcccccccccc--ccccCCCCCCEEEcccccccCccChh---h---hcCCcCCcEEEeecCCccc
Q 038551 108 HLDISWTGITTLP--IELKYLVNLKCLNLEYTFRLSRIPQQ---V---ISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 108 ~L~l~~~~~~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~~---~---~~~~~~L~~L~l~~~~~~~ 166 (366)
.|.+.+=.+..-. ..+.++++|++||++.. .....+.. . -..+++|+.|+.+++.+..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~-~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRD-KNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeecccc-ccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 6666554444222 12456666666666652 22221110 0 0135566666666655543
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.78 E-value=3.3e-06 Score=64.75 Aligned_cols=106 Identities=26% Similarity=0.355 Sum_probs=86.9
Q ss_pred cEEEecCCCcccCC----CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551 15 NFLVLAGVGLTEAP----SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS 88 (366)
Q Consensus 15 ~~~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~ 88 (366)
.++.+.+..+..++ .+.+-.+|+.+++++|.+..+|.. ...+.++.+++.+|.+.++|.. +..++.|+.++++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLR 108 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccc
Confidence 34444455444342 245567899999999999999877 7778999999999999999999 8999999999999
Q ss_pred CCCCCCCcchhhcCCCCCcEEEcccccccccccc
Q 038551 89 YNRSLENLPLGIFNLVSLQHLDISWTGITTLPIE 122 (366)
Q Consensus 89 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~ 122 (366)
+| .+...|..+-.+.+|-+|+...+....+|..
T Consensus 109 ~N-~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 109 FN-PLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cC-ccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 99 7777887777799999999999988877754
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.74 E-value=4.9e-05 Score=62.26 Aligned_cols=98 Identities=22% Similarity=0.270 Sum_probs=80.2
Q ss_pred cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCc---cccchhhcCCCCCCEEEccC
Q 038551 15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLG---TVSNNFFHSMASLRVLILSY 89 (366)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~---~i~~~~~~~l~~L~~L~l~~ 89 (366)
..+++.++++...+.+..++.|.+|.+.+|.|+.+.+. ...++|.+|.+.+|.+. ++.+ +..|+.|++|.+-+
T Consensus 45 d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hccCCccceeeecC
Confidence 45677888888889999999999999999999998766 78889999999999775 5555 67899999999999
Q ss_pred CCCCCCcc----hhhcCCCCCcEEEccccc
Q 038551 90 NRSLENLP----LGIFNLVSLQHLDISWTG 115 (366)
Q Consensus 90 ~~~~~~l~----~~~~~l~~L~~L~l~~~~ 115 (366)
| ..+... ..+..+++|++||..+-.
T Consensus 123 N-pv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 123 N-PVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred C-chhcccCceeEEEEecCcceEeehhhhh
Confidence 9 444332 235678999999998743
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.67 E-value=5.5e-05 Score=64.82 Aligned_cols=138 Identities=23% Similarity=0.283 Sum_probs=70.7
Q ss_pred CCCCCCCcccEEEcccCCccc-cCCC-----CCCCCccEEEccCCCCccccchhh-------------cCCCCCCEEEcc
Q 038551 28 PSIGMWKETTRMSLMQNAIQN-LTEI-----PTCPRLRTLFLPSNHLGTVSNNFF-------------HSMASLRVLILS 88 (366)
Q Consensus 28 ~~~~~~~~L~~L~l~~~~~~~-l~~~-----~~~~~L~~L~l~~~~~~~i~~~~~-------------~~l~~L~~L~l~ 88 (366)
+.+.+||+++.++++.|.|.. .|.. ++...|..|.+++|.++.+-..-+ ..-|.|++.+.+
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 445666777777777666554 2222 555666666676665543322211 134566666666
Q ss_pred CCCCCCCcc-----hhhcCCCCCcEEEcccccccc-----c-cccccCCCCCCEEEcccccccCccC---hhhhcCCcCC
Q 038551 89 YNRSLENLP-----LGIFNLVSLQHLDISWTGITT-----L-PIELKYLVNLKCLNLEYTFRLSRIP---QQVISDLKML 154 (366)
Q Consensus 89 ~~~~~~~l~-----~~~~~l~~L~~L~l~~~~~~~-----l-~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~L 154 (366)
.| ++..-| ..+....+|+++.+..|.+.. + .-++..+.+|+.||+..|.+...-. ..++...+.|
T Consensus 166 rN-Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 166 RN-RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred cc-hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 66 333222 123333566666666666541 1 1124455666677766643222111 1123345556
Q ss_pred cEEEeecCCccc
Q 038551 155 RALRMFECGFNV 166 (366)
Q Consensus 155 ~~L~l~~~~~~~ 166 (366)
++|.+..|-+..
T Consensus 245 rEL~lnDClls~ 256 (388)
T COG5238 245 RELRLNDCLLSN 256 (388)
T ss_pred hhccccchhhcc
Confidence 666666665553
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=0.0002 Score=66.11 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=54.3
Q ss_pred CCCCCcccEEEcccCCccccCCCCCCCCccEEEccCC-CCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 038551 30 IGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSN-HLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQH 108 (366)
Q Consensus 30 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~-~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 108 (366)
+..++++++|++++|.++.+|. -.++|+.|.+.+| .+..+|.. + .++|+.|++++|..+..+|. .|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccce
Confidence 3446788889998888888773 2336888888876 55666654 3 35788888888866666664 3566
Q ss_pred EEccccc---ccccccc
Q 038551 109 LDISWTG---ITTLPIE 122 (366)
Q Consensus 109 L~l~~~~---~~~l~~~ 122 (366)
|++..+. +..+|.+
T Consensus 117 L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 117 LEIKGSATDSIKNVPNG 133 (426)
T ss_pred EEeCCCCCcccccCcch
Confidence 6666554 3345543
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.49 E-value=0.00028 Score=65.14 Aligned_cols=88 Identities=17% Similarity=0.295 Sum_probs=62.3
Q ss_pred CCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccc-ccccccccccCCCCCCEE
Q 038551 54 TCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWT-GITTLPIELKYLVNLKCL 132 (366)
Q Consensus 54 ~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~-~~~~l~~~l~~l~~L~~L 132 (366)
.+.++..|++++|.+..+|. + ..+|+.|.+++|..++.+|..+ ..+|++|++.+| .+..+|. +|+.|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence 47889999999998888873 3 3469999999987777888655 368999999998 7777774 36666
Q ss_pred Ecccc--cccCccChhhhcCCcCCcEEEee
Q 038551 133 NLEYT--FRLSRIPQQVISDLKMLRALRMF 160 (366)
Q Consensus 133 ~l~~~--~~~~~~~~~~~~~~~~L~~L~l~ 160 (366)
++..+ ..+..+|. +|+.|.+.
T Consensus 118 ~L~~n~~~~L~~LPs-------sLk~L~I~ 140 (426)
T PRK15386 118 EIKGSATDSIKNVPN-------GLTSLSIN 140 (426)
T ss_pred EeCCCCCcccccCcc-------hHhheecc
Confidence 66542 22444444 35555553
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=9.4e-05 Score=73.65 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=60.5
Q ss_pred CCCCEEEcccccccCccC-hhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhH
Q 038551 127 VNLKCLNLEYTFRLSRIP-QQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQ 205 (366)
Q Consensus 127 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 205 (366)
.+|++|++++...+..-. ...-.-+|+|+.|.+.+-.+.. ..+...+.++++|..|++++..+..+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~------------~dF~~lc~sFpNL~sLDIS~TnI~nl~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN------------DDFSQLCASFPNLRSLDISGTNISNLS 189 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc------------hhHHHHhhccCccceeecCCCCccCcH
Confidence 466666666633322222 2211245777777777766653 234555566777777777776666665
Q ss_pred hHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccC
Q 038551 206 RLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN 251 (366)
Q Consensus 206 ~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 251 (366)
.+..+.+|+. |.+.+.+......+..+..+++|+.||++..
T Consensus 190 GIS~LknLq~-----L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 190 GISRLKNLQV-----LSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHhccccHHH-----HhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 5444444444 3333333333344445677777777877776
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.43 E-value=0.00078 Score=52.32 Aligned_cols=117 Identities=21% Similarity=0.377 Sum_probs=46.8
Q ss_pred CCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCC
Q 038551 30 IGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSL 106 (366)
Q Consensus 30 ~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L 106 (366)
+.++.+|+.+.+.. .+..++.. ..+.+|+.+.+..+ +..++..+|..+++|+.+.+..+ ...++ ..+..+.+|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccc
Confidence 44556666666653 45555443 55556666666553 55666666666666666666543 22222 234456666
Q ss_pred cEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCC
Q 038551 107 QHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKML 154 (366)
Q Consensus 107 ~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 154 (366)
+.+.+..+ +..++.. +.+. +|+.+.+.. .+..++...+.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 66666543 4444432 4444 666665543 3344444445555444
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=1.1e-05 Score=69.14 Aligned_cols=98 Identities=22% Similarity=0.264 Sum_probs=66.7
Q ss_pred CCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcch--hhcCCCCCcEEE
Q 038551 33 WKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPL--GIFNLVSLQHLD 110 (366)
Q Consensus 33 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~ 110 (366)
+.+++.|++.||.+.++.-..+|+.|++|.++-|+|+++.+ +..|++|++|+|..| .+..+-+ -+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 44667777888888877666778888888888888877766 677888888888887 5554432 246777777777
Q ss_pred ccccccc-cccc-----cccCCCCCCEEE
Q 038551 111 ISWTGIT-TLPI-----ELKYLVNLKCLN 133 (366)
Q Consensus 111 l~~~~~~-~l~~-----~l~~l~~L~~L~ 133 (366)
|..|... +-+. .+.-+++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 7776543 2111 245666666665
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=3.3e-05 Score=66.31 Aligned_cols=101 Identities=26% Similarity=0.214 Sum_probs=80.6
Q ss_pred CCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccccccccccc--ccCCCCCCE
Q 038551 54 TCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIE--LKYLVNLKC 131 (366)
Q Consensus 54 ~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~--l~~l~~L~~ 131 (366)
.+.+.+.|++-+|.+++|.- ...|+.|++|.|+-| .++.+.+ +..|++|++|.|..|.|..+.+. +.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 34567788999999988765 778999999999999 6666654 78899999999999999877654 789999999
Q ss_pred EEcccccccCccCh----hhhcCCcCCcEEE
Q 038551 132 LNLEYTFRLSRIPQ----QVISDLKMLRALR 158 (366)
Q Consensus 132 L~l~~~~~~~~~~~----~~~~~~~~L~~L~ 158 (366)
|.+..|+-.+..+. .++.-+++|++|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99988766655543 3455678888774
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.03 E-value=0.00027 Score=60.37 Aligned_cols=81 Identities=32% Similarity=0.288 Sum_probs=38.1
Q ss_pred CCCccEEEccCCCCccccchhhcCCCCCCEEEccCC--CCCCCcchhhcCCCCCcEEEccccccccccc--cccCCCCCC
Q 038551 55 CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN--RSLENLPLGIFNLVSLQHLDISWTGITTLPI--ELKYLVNLK 130 (366)
Q Consensus 55 ~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~--~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~--~l~~l~~L~ 130 (366)
...|+.+++.+..++++-. +..+++|+.|.++.| +....++....++++|+++.+++|+++.+.. .+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3344444444444433322 444555555555555 2223333333344566666666665543221 134455555
Q ss_pred EEEcccc
Q 038551 131 CLNLEYT 137 (366)
Q Consensus 131 ~L~l~~~ 137 (366)
.|++.+|
T Consensus 120 ~Ldl~n~ 126 (260)
T KOG2739|consen 120 SLDLFNC 126 (260)
T ss_pred hhhcccC
Confidence 5555554
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.96 E-value=0.00032 Score=67.53 Aligned_cols=110 Identities=23% Similarity=0.151 Sum_probs=53.3
Q ss_pred CCCCCEEEccCCCCCCC--cchhhcCCCCCcEEEcccc--ccccc----cccccCCCCCCEEEcccccccCccChhhhc-
Q 038551 79 MASLRVLILSYNRSLEN--LPLGIFNLVSLQHLDISWT--GITTL----PIELKYLVNLKCLNLEYTFRLSRIPQQVIS- 149 (366)
Q Consensus 79 l~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~--~~~~l----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~- 149 (366)
++.|+.+.+..+..++. +-.....+++|+.|+++++ .+... ......+.+|+.+++.+|..+++.....+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 55566666665544443 2233445566666666552 11111 112344456666666665444443322222
Q ss_pred CCcCCcEEEeecCC-ccccccccccccCCchhhhhhhhcCcccceeeecccc
Q 038551 150 DLKMLRALRMFECG-FNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQS 200 (366)
Q Consensus 150 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 200 (366)
.+++|++|.+.+|. +++ .........++.|++|++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~------------~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTD------------EGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccch------------hHHHHHHHhcCcccEEeeecCc
Confidence 35666666655555 342 2333333445556666665443
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.81 E-value=0.0058 Score=47.32 Aligned_cols=102 Identities=18% Similarity=0.310 Sum_probs=53.5
Q ss_pred CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccccccccccc-cccCCCCCC
Q 038551 53 PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWTGITTLPI-ELKYLVNLK 130 (366)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~ 130 (366)
..+.+|+.+.+.. .+..+....|..+++|+.+.+..+ +..++ ..+.++..++.+.+.. .+..++. .+..+++|+
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 4666777777764 566777777777878888887765 44444 3456666778777765 4444444 356677777
Q ss_pred EEEcccccccCccChhhhcCCcCCcEEEeec
Q 038551 131 CLNLEYTFRLSRIPQQVISDLKMLRALRMFE 161 (366)
Q Consensus 131 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (366)
.+++.. + +..++...+.++ +|+.+.+..
T Consensus 85 ~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPS-N-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETT-T--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCc-c-ccEEchhhhcCC-CceEEEECC
Confidence 777764 2 555555556666 777776654
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.54 E-value=0.00093 Score=64.35 Aligned_cols=133 Identities=23% Similarity=0.183 Sum_probs=86.3
Q ss_pred CCCCCccEEEccCC-CCcc--ccchhhcCCCCCCEEEccCC-CCCCCcc----hhhcCCCCCcEEEccccc-cccc--cc
Q 038551 53 PTCPRLRTLFLPSN-HLGT--VSNNFFHSMASLRVLILSYN-RSLENLP----LGIFNLVSLQHLDISWTG-ITTL--PI 121 (366)
Q Consensus 53 ~~~~~L~~L~l~~~-~~~~--i~~~~~~~l~~L~~L~l~~~-~~~~~l~----~~~~~l~~L~~L~l~~~~-~~~l--~~ 121 (366)
..++.|+.+.+.++ .+.. +.+. ...++.|+.|+++++ ......+ .....+.+|+.|+++.+. ++.. ..
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDAL-ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHH-HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 45788999988887 5544 3233 667999999999873 2222222 223567889999999986 5522 22
Q ss_pred cccCCCCCCEEEcccccccCccC-hhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeec
Q 038551 122 ELKYLVNLKCLNLEYTFRLSRIP-QQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTIT 197 (366)
Q Consensus 122 ~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 197 (366)
....+++|++|.+.+|..+++.. ..+...++.|++|++.+|.... .........++++|+.+.+.
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~-----------d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT-----------DSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch-----------HHHHHHHHHhCcchhhhhhh
Confidence 23458899999988887544433 2334578899999999987653 12333334456666665543
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.32 E-value=0.0032 Score=53.89 Aligned_cols=104 Identities=26% Similarity=0.311 Sum_probs=76.1
Q ss_pred CCCcccEEEcccCCccccCCCCCCCCccEEEccCC--CCc-cccchhhcCCCCCCEEEccCCCCCCCcc--hhhcCCCCC
Q 038551 32 MWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSN--HLG-TVSNNFFHSMASLRVLILSYNRSLENLP--LGIFNLVSL 106 (366)
Q Consensus 32 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~--~~~-~i~~~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L 106 (366)
.+..|+.+++.+..++.+...+.+++|+.|.++.| .+. .++.. ...+++|+++++++| .+..+. ..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-ccccccccchhhhhcch
Confidence 35678888888888888777788999999999999 332 34443 445699999999999 655322 125667788
Q ss_pred cEEEccccccccccc----cccCCCCCCEEEcccc
Q 038551 107 QHLDISWTGITTLPI----ELKYLVNLKCLNLEYT 137 (366)
Q Consensus 107 ~~L~l~~~~~~~l~~----~l~~l~~L~~L~l~~~ 137 (366)
..|++..|..+.+-. .+.-+++|.+|+-...
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 899999887764422 3677888988887763
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.47 E-value=0.0073 Score=30.90 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=8.2
Q ss_pred CcEEEcccccccccccc
Q 038551 106 LQHLDISWTGITTLPIE 122 (366)
Q Consensus 106 L~~L~l~~~~~~~l~~~ 122 (366)
|++|++++|.++.+|..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44455555544444443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.88 E-value=0.027 Score=28.73 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=8.0
Q ss_pred ccEEEccCCCCccccch
Q 038551 58 LRTLFLPSNHLGTVSNN 74 (366)
Q Consensus 58 L~~L~l~~~~~~~i~~~ 74 (366)
|++|++++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44445555444444443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.80 E-value=0.042 Score=26.05 Aligned_cols=13 Identities=38% Similarity=0.555 Sum_probs=4.3
Q ss_pred CcEEEcccccccc
Q 038551 106 LQHLDISWTGITT 118 (366)
Q Consensus 106 L~~L~l~~~~~~~ 118 (366)
|++|++++|+++.
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444433
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.39 E-value=0.035 Score=45.93 Aligned_cols=85 Identities=20% Similarity=0.120 Sum_probs=47.0
Q ss_pred CCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCc
Q 038551 153 MLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSL 232 (366)
Q Consensus 153 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~ 232 (366)
.++.++-+++.+.. .-++.+..++.++.|.+....-...--+..+..+.. +++.|+++.|..+++.
T Consensus 102 ~IeaVDAsds~I~~-------------eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~-~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 102 KIEAVDASDSSIMY-------------EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAP-SLQDLDLSGCPRITDG 167 (221)
T ss_pred eEEEEecCCchHHH-------------HHHHHHhccchhhhheeccccchhhHHHHHhccccc-chheeeccCCCeechh
Confidence 35566666666654 445555566666666655443322222222333333 4666777777777777
Q ss_pred chhhhccCCcCcEEEeccC
Q 038551 233 SVFAFASLRHLRTLQLYFN 251 (366)
Q Consensus 233 ~~~~l~~~~~L~~L~l~~~ 251 (366)
.+.-+..+++|+.|.+.+-
T Consensus 168 GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 168 GLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HHHHHHHhhhhHHHHhcCc
Confidence 6666666666666666554
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.65 E-value=0.17 Score=26.79 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=12.5
Q ss_pred CCccEEEccCCCCccccchhh
Q 038551 56 PRLRTLFLPSNHLGTVSNNFF 76 (366)
Q Consensus 56 ~~L~~L~l~~~~~~~i~~~~~ 76 (366)
++|+.|++.+|.+..+|+++|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666666665544
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.65 E-value=0.17 Score=26.79 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=12.5
Q ss_pred CCccEEEccCCCCccccchhh
Q 038551 56 PRLRTLFLPSNHLGTVSNNFF 76 (366)
Q Consensus 56 ~~L~~L~l~~~~~~~i~~~~~ 76 (366)
++|+.|++.+|.+..+|+++|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666666665544
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.76 E-value=0.055 Score=44.80 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=16.5
Q ss_pred CCCCEEEcccccccCccChhhhcCCcCCcEEEeec
Q 038551 127 VNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFE 161 (366)
Q Consensus 127 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (366)
++|+.|++++|..+++..-.-+.++++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 45555555555555444333234444455444433
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=85.84 E-value=0.019 Score=54.99 Aligned_cols=162 Identities=25% Similarity=0.235 Sum_probs=70.4
Q ss_pred CCCCCcccEEEcccCCccc-----cCCC-CCC-CCccEEEccCCCCcc-----ccchhhcCCCCCCEEEccCCCCCC---
Q 038551 30 IGMWKETTRMSLMQNAIQN-----LTEI-PTC-PRLRTLFLPSNHLGT-----VSNNFFHSMASLRVLILSYNRSLE--- 94 (366)
Q Consensus 30 ~~~~~~L~~L~l~~~~~~~-----l~~~-~~~-~~L~~L~l~~~~~~~-----i~~~~~~~l~~L~~L~l~~~~~~~--- 94 (366)
+...+.|..|++++|.+.. +... ... ..+++|.+..|.++. +... +.....+++++++.|....
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~-L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV-LEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH-HhcccchhHHHHHhcccchhhh
Confidence 3444555556666555543 1111 111 344455555554431 2222 3335556666666553221
Q ss_pred -Ccchhhc----CCCCCcEEEccccccc-----cccccccCCCC-CCEEEcccccccCccCh-hh---hcCC-cCCcEEE
Q 038551 95 -NLPLGIF----NLVSLQHLDISWTGIT-----TLPIELKYLVN-LKCLNLEYTFRLSRIPQ-QV---ISDL-KMLRALR 158 (366)
Q Consensus 95 -~l~~~~~----~l~~L~~L~l~~~~~~-----~l~~~l~~l~~-L~~L~l~~~~~~~~~~~-~~---~~~~-~~L~~L~ 158 (366)
.++..+. ...++++|++.+|.++ .+...+...+. +..+++.. +.+++... .. +..+ ..+++++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~ 268 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLD 268 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhh
Confidence 1122222 3455566666655544 11122333333 44455555 23332210 00 2222 3455666
Q ss_pred eecCCccccccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551 159 MFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG 202 (366)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 202 (366)
+..|.++. .+.......+..++.++.+.+..|...
T Consensus 269 l~~nsi~~---------~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 269 LSRNSITE---------KGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhcCCccc---------cchHHHHHHHhhhHHHHHhhcccCccc
Confidence 66666554 112233344445556666666655554
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.69 E-value=0.033 Score=47.11 Aligned_cols=83 Identities=18% Similarity=0.106 Sum_probs=36.8
Q ss_pred CCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 038551 30 IGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQH 108 (366)
Q Consensus 30 ~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 108 (366)
+..+...+.||++.|.+..+... ..+..+..++++.|.+...|.+ ++....++.+++..| .....|.+++..+++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 33444455555554444433322 3333444444444444444444 444444444444444 34444444444444444
Q ss_pred EEcccc
Q 038551 109 LDISWT 114 (366)
Q Consensus 109 L~l~~~ 114 (366)
+++.++
T Consensus 116 ~e~k~~ 121 (326)
T KOG0473|consen 116 NEQKKT 121 (326)
T ss_pred hhhccC
Confidence 444444
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.42 E-value=0.027 Score=47.67 Aligned_cols=84 Identities=23% Similarity=0.118 Sum_probs=57.0
Q ss_pred CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEE
Q 038551 53 PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCL 132 (366)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L 132 (366)
........||++.|.+...... |..++.|..|+++.| .+..+|..++....++.+++..|..+..|.+.+..+.++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 4556666777777766554444 555666777777776 66677766666667777777777777777777777777777
Q ss_pred Eccccc
Q 038551 133 NLEYTF 138 (366)
Q Consensus 133 ~l~~~~ 138 (366)
+...+.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 776643
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=70.18 E-value=0.12 Score=49.62 Aligned_cols=13 Identities=46% Similarity=0.460 Sum_probs=6.2
Q ss_pred cCCcCcEEEeccC
Q 038551 239 SLRHLRTLQLYFN 251 (366)
Q Consensus 239 ~~~~L~~L~l~~~ 251 (366)
.++.++.+.+..|
T Consensus 288 ~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 288 SCRQLEELSLSNN 300 (478)
T ss_pred hhHHHHHhhcccC
Confidence 3444555555444
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=68.44 E-value=2.9 Score=21.43 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=6.1
Q ss_pred cCCcEEEeecCCcc
Q 038551 152 KMLRALRMFECGFN 165 (366)
Q Consensus 152 ~~L~~L~l~~~~~~ 165 (366)
++|++|++++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555544
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.66 E-value=3.6 Score=21.90 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=11.0
Q ss_pred CCcEEEccccccccccc
Q 038551 105 SLQHLDISWTGITTLPI 121 (366)
Q Consensus 105 ~L~~L~l~~~~~~~l~~ 121 (366)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46666666666666664
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=67.35 E-value=3.8 Score=21.52 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=8.9
Q ss_pred CCCCEEEcccccccCc
Q 038551 127 VNLKCLNLEYTFRLSR 142 (366)
Q Consensus 127 ~~L~~L~l~~~~~~~~ 142 (366)
++|++|++++|..+++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 4556666666554444
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.27 E-value=6 Score=21.03 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=6.6
Q ss_pred CCcEEEccccccc
Q 038551 105 SLQHLDISWTGIT 117 (366)
Q Consensus 105 ~L~~L~l~~~~~~ 117 (366)
+|+.|++++|+++
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4455555555544
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=49.11 E-value=14 Score=19.86 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=6.8
Q ss_pred CCcEEEccccccc
Q 038551 105 SLQHLDISWTGIT 117 (366)
Q Consensus 105 ~L~~L~l~~~~~~ 117 (366)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.20 E-value=10 Score=36.61 Aligned_cols=81 Identities=20% Similarity=0.160 Sum_probs=43.7
Q ss_pred CCCCCccEEEccCCCCccccc--hhhcCCCCCCEEEccCCCCCCCcchhhc--CCCCCcEEEccccccc-cc--cc----
Q 038551 53 PTCPRLRTLFLPSNHLGTVSN--NFFHSMASLRVLILSYNRSLENLPLGIF--NLVSLQHLDISWTGIT-TL--PI---- 121 (366)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~i~~--~~~~~l~~L~~L~l~~~~~~~~l~~~~~--~l~~L~~L~l~~~~~~-~l--~~---- 121 (366)
.+.+.+..+++++|++..+.. ++-...|+|..|+|++|.........+. +...|++|-+.+|.+. ++ +.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 566777777777776644322 2234567788888887711111111122 2345777777777654 11 11
Q ss_pred -cccCCCCCCEEE
Q 038551 122 -ELKYLVNLKCLN 133 (366)
Q Consensus 122 -~l~~l~~L~~L~ 133 (366)
.-...|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 123566676665
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.51 E-value=26 Score=33.97 Aligned_cols=68 Identities=22% Similarity=0.084 Sum_probs=38.9
Q ss_pred cCCCCCCEEEccCCCCC--CCcchhhcCCCCCcEEEcccc--cccccccc-ccCCCCCCEEEcccccccCccC
Q 038551 77 HSMASLRVLILSYNRSL--ENLPLGIFNLVSLQHLDISWT--GITTLPIE-LKYLVNLKCLNLEYTFRLSRIP 144 (366)
Q Consensus 77 ~~l~~L~~L~l~~~~~~--~~l~~~~~~l~~L~~L~l~~~--~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~ 144 (366)
.+.+.+..+++++|+.. +.+...-...++|..|+|++| .+...++. -.....|++|-+.+|+..+.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchh
Confidence 45677777788888321 123333345678888888888 33322211 1233457788888866655543
Done!