Query 038551
Match_columns 366
No_of_seqs 172 out of 2680
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 21:15:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 7.4E-25 2.5E-29 200.8 25.6 272 13-331 45-324 (347)
2 3v47_A TOLL-like receptor 5B a 99.9 3.1E-25 1.1E-29 210.8 20.7 308 14-334 12-411 (455)
3 3o6n_A APL1; leucine-rich repe 99.9 5.2E-25 1.8E-29 205.1 20.8 279 32-332 43-353 (390)
4 4fmz_A Internalin; leucine ric 99.9 9.2E-25 3.2E-29 200.2 21.8 266 21-333 31-302 (347)
5 2id5_A Lingo-1, leucine rich r 99.9 2.2E-24 7.5E-29 206.2 21.8 292 7-331 7-333 (477)
6 2id5_A Lingo-1, leucine rich r 99.9 2.7E-24 9.1E-29 205.6 21.4 264 37-331 14-309 (477)
7 1o6v_A Internalin A; bacterial 99.9 1E-23 3.4E-28 201.1 24.8 117 13-134 47-163 (466)
8 3t6q_A CD180 antigen; protein- 99.9 3.8E-24 1.3E-28 210.5 22.6 181 7-203 8-193 (606)
9 3vq2_A TLR4, TOLL-like recepto 99.9 2.4E-24 8.3E-29 211.9 19.7 157 7-166 7-167 (606)
10 3oja_B Anopheles plasmodium-re 99.9 9.7E-24 3.3E-28 207.2 21.8 277 33-331 50-358 (597)
11 4eco_A Uncharacterized protein 99.9 6.5E-25 2.2E-29 216.9 13.5 159 5-166 73-344 (636)
12 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-23 3.7E-28 200.0 21.2 270 12-332 42-353 (457)
13 2z80_A TOLL-like receptor 2, v 99.9 2.3E-24 7.8E-29 198.1 15.5 183 9-206 28-215 (353)
14 2z81_A CD282 antigen, TOLL-lik 99.9 1.6E-23 5.6E-28 203.6 21.8 149 16-166 9-162 (549)
15 4eco_A Uncharacterized protein 99.9 6E-25 2.1E-29 217.1 11.8 291 22-334 193-581 (636)
16 3rgz_A Protein brassinosteroid 99.9 1.5E-23 5.3E-28 211.5 20.5 132 31-165 175-307 (768)
17 1o6v_A Internalin A; bacterial 99.9 4.4E-23 1.5E-27 196.6 21.8 292 12-332 68-389 (466)
18 3rgz_A Protein brassinosteroid 99.9 1.1E-23 3.9E-28 212.5 18.6 175 12-202 178-356 (768)
19 1ziw_A TOLL-like receptor 3; i 99.9 5.6E-23 1.9E-27 204.9 22.7 173 15-203 7-185 (680)
20 3vq2_A TLR4, TOLL-like recepto 99.9 7.3E-23 2.5E-27 201.4 22.7 126 12-138 32-164 (606)
21 3t6q_A CD180 antigen; protein- 99.9 8.5E-23 2.9E-27 200.9 22.3 78 13-90 82-163 (606)
22 2z63_A TOLL-like receptor 4, v 99.9 9.3E-23 3.2E-27 199.0 22.4 151 13-166 8-163 (570)
23 3o6n_A APL1; leucine-rich repe 99.9 9.7E-23 3.3E-27 189.8 21.1 278 12-313 45-350 (390)
24 2z81_A CD282 antigen, TOLL-lik 99.9 5.2E-23 1.8E-27 200.0 20.0 154 12-166 26-210 (549)
25 3j0a_A TOLL-like receptor 5; m 99.9 2.1E-22 7.3E-27 205.2 24.9 151 14-166 6-162 (844)
26 3v47_A TOLL-like receptor 5B a 99.9 1E-22 3.5E-27 193.4 20.2 284 12-323 30-417 (455)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-22 5.8E-27 197.1 21.7 145 12-164 31-181 (562)
28 3bz5_A Internalin-J, INLJ; leu 99.9 2.3E-22 7.9E-27 190.8 22.1 141 12-166 64-205 (457)
29 2z63_A TOLL-like receptor 4, v 99.9 4.8E-23 1.6E-27 201.1 17.6 152 12-165 28-190 (570)
30 4ecn_A Leucine-rich repeat pro 99.9 1.3E-23 4.3E-28 212.3 13.7 291 22-335 435-822 (876)
31 1xku_A Decorin; proteoglycan, 99.9 3.4E-22 1.2E-26 181.8 21.8 200 35-257 32-232 (330)
32 2z7x_B TOLL-like receptor 1, v 99.9 2.3E-22 7.8E-27 194.3 20.6 143 14-164 2-150 (520)
33 2ft3_A Biglycan; proteoglycan, 99.9 3E-22 1E-26 182.4 19.1 146 15-165 36-185 (332)
34 4ecn_A Leucine-rich repeat pro 99.9 2.7E-22 9.3E-27 202.6 19.6 302 12-331 448-840 (876)
35 3oja_B Anopheles plasmodium-re 99.9 5.4E-22 1.8E-26 194.8 20.8 276 14-313 53-356 (597)
36 1ogq_A PGIP-2, polygalacturona 99.9 6.9E-23 2.4E-27 185.1 13.0 174 13-202 51-234 (313)
37 3zyj_A Leucine-rich repeat-con 99.9 8E-22 2.7E-26 186.5 20.2 245 7-281 39-287 (440)
38 3zyi_A Leucine-rich repeat-con 99.9 7.4E-22 2.5E-26 187.4 19.8 239 14-281 56-298 (452)
39 4g8a_A TOLL-like receptor 4; l 99.9 1.8E-21 6.2E-26 192.1 23.0 158 4-166 24-187 (635)
40 3j0a_A TOLL-like receptor 5; m 99.9 2.1E-21 7.3E-26 197.8 22.5 154 12-166 24-188 (844)
41 4fcg_A Uncharacterized protein 99.9 3.7E-22 1.3E-26 181.4 14.3 216 34-281 81-309 (328)
42 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-21 7.5E-26 172.8 18.9 229 7-254 6-238 (285)
43 2ft3_A Biglycan; proteoglycan, 99.9 2.5E-21 8.5E-26 176.3 18.5 259 35-331 34-307 (332)
44 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-20 3.8E-25 182.4 22.4 301 12-333 21-483 (520)
45 1xku_A Decorin; proteoglycan, 99.9 1.6E-20 5.4E-25 170.8 21.4 283 13-329 32-330 (330)
46 2z66_A Variable lymphocyte rec 99.9 3.5E-21 1.2E-25 173.2 16.6 222 15-256 10-238 (306)
47 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-20 4.5E-25 187.8 22.3 33 300-333 583-624 (680)
48 2z66_A Variable lymphocyte rec 99.9 7.4E-21 2.5E-25 171.1 17.3 200 37-257 10-215 (306)
49 1ogq_A PGIP-2, polygalacturona 99.9 4.6E-21 1.6E-25 173.0 14.8 154 34-203 50-211 (313)
50 4fcg_A Uncharacterized protein 99.9 8E-21 2.7E-25 172.6 16.3 224 12-256 81-316 (328)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.3E-20 2.5E-24 178.4 24.0 130 31-166 28-160 (562)
52 2z80_A TOLL-like receptor 2, v 99.9 7.7E-21 2.6E-25 174.5 15.8 228 13-258 53-294 (353)
53 3zyj_A Leucine-rich repeat-con 99.9 3.1E-20 1E-24 175.7 19.6 245 35-313 44-290 (440)
54 3zyi_A Leucine-rich repeat-con 99.8 2.8E-20 9.6E-25 176.5 19.1 245 35-313 55-301 (452)
55 3g06_A SSPH2 (leucine-rich rep 99.8 6.8E-20 2.3E-24 179.3 20.9 256 7-331 35-297 (622)
56 1jl5_A Outer protein YOPM; leu 99.8 2E-19 6.7E-24 170.5 20.9 277 12-332 71-371 (454)
57 2o6q_A Variable lymphocyte rec 99.8 1.2E-19 4.1E-24 160.3 17.8 198 13-254 17-218 (270)
58 1jl5_A Outer protein YOPM; leu 99.8 3.5E-19 1.2E-23 168.8 20.8 143 35-206 132-274 (454)
59 2z62_A TOLL-like receptor 4, v 99.8 2.3E-19 8E-24 158.9 18.1 222 14-254 9-237 (276)
60 2xwt_C Thyrotropin receptor; s 99.8 8.9E-20 3.1E-24 158.1 14.6 215 7-280 8-233 (239)
61 1ozn_A Reticulon 4 receptor; N 99.8 2.7E-19 9.1E-24 159.3 16.5 201 37-257 14-217 (285)
62 1h6u_A Internalin H; cell adhe 99.8 1.8E-19 6.2E-24 162.2 15.0 206 22-258 29-234 (308)
63 3o53_A Protein LRIM1, AGAP0063 99.8 2.2E-20 7.5E-25 168.9 8.8 197 31-257 31-230 (317)
64 1wwl_A Monocyte differentiatio 99.8 6.4E-21 2.2E-25 172.1 4.7 251 30-332 39-310 (312)
65 1p9a_G Platelet glycoprotein I 99.8 8.1E-19 2.8E-23 156.5 16.0 155 32-203 8-162 (290)
66 3m19_A Variable lymphocyte rec 99.8 1.1E-18 3.7E-23 152.4 16.3 181 6-203 9-193 (251)
67 1p9a_G Platelet glycoprotein I 99.8 2.1E-18 7.1E-23 153.8 16.4 181 7-205 4-188 (290)
68 3rfs_A Internalin B, repeat mo 99.8 2.6E-18 9E-23 151.8 16.5 158 30-204 37-196 (272)
69 3rfs_A Internalin B, repeat mo 99.8 8.8E-19 3E-23 154.9 12.5 151 35-203 20-171 (272)
70 4g8a_A TOLL-like receptor 4; l 99.8 8.3E-18 2.9E-22 165.8 20.8 125 12-137 52-183 (635)
71 2o6q_A Variable lymphocyte rec 99.8 8.2E-18 2.8E-22 148.4 17.9 175 13-202 38-218 (270)
72 1h6u_A Internalin H; cell adhe 99.8 1.1E-17 3.6E-22 150.6 17.9 181 12-215 41-221 (308)
73 3o53_A Protein LRIM1, AGAP0063 99.8 1.3E-18 4.4E-23 157.3 11.4 251 35-328 11-272 (317)
74 1z7x_W Ribonuclease inhibitor; 99.8 2.8E-19 9.6E-24 169.9 7.1 298 14-331 30-411 (461)
75 3oja_A Leucine-rich immune mol 99.8 2.6E-18 9E-23 164.2 12.7 198 31-258 31-231 (487)
76 3oja_A Leucine-rich immune mol 99.8 3.2E-18 1.1E-22 163.7 13.1 231 53-326 31-270 (487)
77 2z62_A TOLL-like receptor 4, v 99.8 2.3E-17 7.8E-22 146.0 17.1 152 38-204 11-164 (276)
78 4ay9_X Follicle-stimulating ho 99.7 1.7E-17 5.9E-22 152.0 15.7 243 7-313 7-257 (350)
79 1z7x_W Ribonuclease inhibitor; 99.7 8E-19 2.7E-23 166.8 6.9 293 15-332 6-384 (461)
80 3g06_A SSPH2 (leucine-rich rep 99.7 1.1E-16 3.7E-21 156.7 21.4 235 12-313 61-295 (622)
81 1h6t_A Internalin B; cell adhe 99.7 1.9E-17 6.5E-22 147.7 13.2 181 24-257 36-216 (291)
82 2xwt_C Thyrotropin receptor; s 99.7 1.2E-17 4E-22 144.7 11.5 177 12-205 31-221 (239)
83 3m19_A Variable lymphocyte rec 99.7 6.6E-17 2.3E-21 141.0 16.3 178 34-254 14-192 (251)
84 3ogk_B Coronatine-insensitive 99.7 8.4E-18 2.9E-22 164.7 11.3 295 14-333 140-528 (592)
85 2ast_B S-phase kinase-associat 99.7 7.5E-18 2.6E-22 153.3 9.9 218 14-251 49-282 (336)
86 3ogk_B Coronatine-insensitive 99.7 2.5E-17 8.4E-22 161.4 13.8 294 12-331 112-501 (592)
87 2ast_B S-phase kinase-associat 99.7 6.2E-18 2.1E-22 153.9 8.3 219 35-281 48-280 (336)
88 1wwl_A Monocyte differentiatio 99.7 1.7E-17 5.8E-22 149.6 10.6 218 36-281 65-304 (312)
89 2o6s_A Variable lymphocyte rec 99.7 1.3E-16 4.3E-21 135.1 15.1 165 15-202 10-178 (208)
90 1h6t_A Internalin B; cell adhe 99.7 1.5E-16 5E-21 141.9 15.9 169 13-204 47-215 (291)
91 3e6j_A Variable lymphocyte rec 99.7 2.7E-16 9.3E-21 135.2 15.1 148 16-166 23-173 (229)
92 4ezg_A Putative uncharacterize 99.7 9.7E-17 3.3E-21 134.7 11.8 154 31-203 41-195 (197)
93 1m9s_A Internalin B; cell inva 99.7 1.1E-16 3.7E-21 156.3 13.4 161 22-205 31-191 (605)
94 2xot_A Amphoterin-induced prot 99.7 4.1E-16 1.4E-20 143.4 14.9 172 15-202 21-202 (361)
95 4ezg_A Putative uncharacterize 99.7 4.6E-16 1.6E-20 130.5 13.6 150 13-166 45-195 (197)
96 4glp_A Monocyte differentiatio 99.7 7.4E-16 2.5E-20 138.6 15.8 228 56-331 64-307 (310)
97 2v9t_B SLIT homolog 2 protein 99.7 9.1E-16 3.1E-20 131.0 15.3 148 15-165 14-165 (220)
98 2p1m_B Transport inhibitor res 99.7 3.9E-17 1.3E-21 160.0 7.6 300 12-331 105-519 (594)
99 3goz_A Leucine-rich repeat-con 99.7 2E-16 6.9E-21 145.5 12.0 174 18-202 4-209 (362)
100 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-15 4E-20 130.3 15.0 149 15-166 14-167 (220)
101 1xeu_A Internalin C; cellular 99.7 2.6E-16 8.9E-21 138.2 11.1 163 18-204 25-187 (263)
102 2v9t_B SLIT homolog 2 protein 99.7 1.1E-15 3.9E-20 130.4 13.9 150 37-202 14-165 (220)
103 2ca6_A RAN GTPase-activating p 99.7 3.8E-17 1.3E-21 151.7 5.0 221 20-255 17-288 (386)
104 1m9s_A Internalin B; cell inva 99.7 8.8E-16 3E-20 149.9 14.0 169 13-204 44-212 (605)
105 4glp_A Monocyte differentiatio 99.6 2.7E-16 9.1E-21 141.6 9.3 221 34-281 64-302 (310)
106 2ca6_A RAN GTPase-activating p 99.6 2.8E-17 9.5E-22 152.6 2.2 252 46-313 21-314 (386)
107 1xeu_A Internalin C; cellular 99.6 2.3E-16 8E-21 138.5 6.7 172 32-257 17-188 (263)
108 3e6j_A Variable lymphocyte rec 99.6 6.4E-15 2.2E-19 126.5 14.9 150 36-202 21-172 (229)
109 2o6s_A Variable lymphocyte rec 99.6 6.6E-15 2.3E-19 124.5 14.7 150 37-202 10-161 (208)
110 3goz_A Leucine-rich repeat-con 99.6 4.3E-16 1.5E-20 143.4 7.1 258 39-313 3-295 (362)
111 2v70_A SLIT-2, SLIT homolog 2 99.6 7.1E-15 2.4E-19 125.4 13.7 150 37-202 14-166 (220)
112 3cvr_A Invasion plasmid antige 99.6 9.7E-15 3.3E-19 141.2 15.4 183 35-255 60-244 (571)
113 2p1m_B Transport inhibitor res 99.5 1.1E-14 3.8E-19 142.5 9.9 152 30-196 62-242 (594)
114 2xot_A Amphoterin-induced prot 99.5 3.2E-14 1.1E-18 130.7 11.9 151 13-165 40-202 (361)
115 2ell_A Acidic leucine-rich nuc 99.5 3.8E-14 1.3E-18 115.5 11.0 130 33-165 23-160 (168)
116 4ay9_X Follicle-stimulating ho 99.5 7.2E-14 2.5E-18 127.8 13.7 215 13-251 31-256 (350)
117 3cvr_A Invasion plasmid antige 99.5 1.7E-13 5.8E-18 132.5 16.1 184 9-226 56-240 (571)
118 2je0_A Acidic leucine-rich nuc 99.5 6.2E-14 2.1E-18 111.9 10.1 125 33-160 16-148 (149)
119 1a9n_A U2A', U2A'; complex (nu 99.5 3E-14 1E-18 117.1 8.2 133 28-164 13-152 (176)
120 1a9n_A U2A', U2A'; complex (nu 99.5 9.3E-14 3.2E-18 114.2 9.6 128 11-139 18-152 (176)
121 2wfh_A SLIT homolog 2 protein 99.5 3.1E-13 1E-17 112.8 12.2 124 38-165 14-139 (193)
122 1w8a_A SLIT protein; signaling 99.5 3.7E-13 1.3E-17 112.2 12.5 128 37-166 11-140 (192)
123 2ell_A Acidic leucine-rich nuc 99.5 2.5E-13 8.7E-18 110.6 11.3 132 12-145 24-164 (168)
124 2wfh_A SLIT homolog 2 protein 99.5 5.6E-13 1.9E-17 111.2 13.5 124 15-140 13-139 (193)
125 2o6r_A Variable lymphocyte rec 99.5 5.4E-13 1.8E-17 109.6 13.3 127 37-166 10-138 (177)
126 1w8a_A SLIT protein; signaling 99.5 4.7E-13 1.6E-17 111.6 12.3 133 7-144 6-143 (192)
127 4b8c_D Glucose-repressible alc 99.5 6.4E-14 2.2E-18 140.0 8.1 110 53-166 221-330 (727)
128 2o6r_A Variable lymphocyte rec 99.5 1.3E-12 4.3E-17 107.4 14.0 129 14-144 9-141 (177)
129 2je0_A Acidic leucine-rich nuc 99.4 6.1E-13 2.1E-17 106.0 10.7 124 12-136 17-149 (149)
130 4b8c_D Glucose-repressible alc 99.3 1.4E-12 4.9E-17 130.2 8.6 152 34-203 173-330 (727)
131 1dce_A Protein (RAB geranylger 99.3 7.8E-12 2.7E-16 121.3 11.7 147 30-196 405-567 (567)
132 3sb4_A Hypothetical leucine ri 99.3 1.4E-11 4.7E-16 111.6 11.0 217 33-279 48-327 (329)
133 1ds9_A Outer arm dynein; leuci 99.3 1.3E-13 4.6E-18 115.5 -2.7 118 68-203 37-154 (198)
134 2r9u_A Variable lymphocyte rec 99.3 3.6E-11 1.2E-15 98.4 11.8 99 37-137 15-115 (174)
135 1dce_A Protein (RAB geranylger 99.3 1.5E-11 5.1E-16 119.3 10.8 121 35-159 442-567 (567)
136 2r9u_A Variable lymphocyte rec 99.2 6.6E-11 2.2E-15 96.8 11.2 102 59-165 15-118 (174)
137 3g39_A Variable lymphocyte rec 99.2 8.7E-11 3E-15 95.7 11.6 97 38-136 13-111 (170)
138 3g39_A Variable lymphocyte rec 99.2 9.5E-11 3.2E-15 95.5 11.1 109 7-120 7-118 (170)
139 1ds9_A Outer arm dynein; leuci 99.2 3.3E-12 1.1E-16 106.9 2.4 127 35-166 24-154 (198)
140 3sb4_A Hypothetical leucine ri 99.1 3.7E-10 1.3E-14 102.2 10.5 56 33-89 100-157 (329)
141 4fdw_A Leucine rich hypothetic 99.0 8.5E-09 2.9E-13 95.6 17.6 237 34-313 113-356 (401)
142 4fdw_A Leucine rich hypothetic 99.0 1E-08 3.5E-13 95.1 17.9 215 29-281 131-353 (401)
143 2ifg_A High affinity nerve gro 99.0 1.1E-09 3.7E-14 99.8 10.7 101 16-117 12-116 (347)
144 3un9_A NLR family member X1; l 99.0 2.4E-10 8.4E-15 105.0 3.6 158 34-202 72-252 (372)
145 2ifg_A High affinity nerve gro 98.9 3.1E-09 1.1E-13 96.7 10.5 100 38-138 12-114 (347)
146 3un9_A NLR family member X1; l 98.9 3.3E-10 1.1E-14 104.1 1.5 152 13-166 73-253 (372)
147 4gt6_A Cell surface protein; l 98.5 3.1E-06 1.1E-10 78.2 17.2 103 29-135 58-168 (394)
148 4fs7_A Uncharacterized protein 98.5 5.2E-06 1.8E-10 76.7 17.1 126 29-162 66-195 (394)
149 2ra8_A Uncharacterized protein 98.4 2.5E-07 8.5E-12 84.3 5.6 178 53-252 136-341 (362)
150 4fs7_A Uncharacterized protein 98.4 5.6E-06 1.9E-10 76.5 14.9 104 53-162 159-263 (394)
151 2ra8_A Uncharacterized protein 98.4 2.4E-06 8.3E-11 77.8 11.4 167 76-256 135-322 (362)
152 4gt6_A Cell surface protein; l 98.3 1.5E-05 5.2E-10 73.6 16.3 80 30-112 83-168 (394)
153 1io0_A Tropomodulin; LRR prote 98.3 8.9E-07 3E-11 72.8 6.1 46 148-202 117-164 (185)
154 3e4g_A ATP synthase subunit S, 98.3 1.1E-06 3.7E-11 71.0 6.3 40 217-256 115-155 (176)
155 1io0_A Tropomodulin; LRR prote 98.2 1.7E-06 5.9E-11 71.0 6.4 111 53-166 33-165 (185)
156 3e4g_A ATP synthase subunit S, 98.1 7E-06 2.4E-10 66.2 6.5 59 105-163 62-125 (176)
157 4h09_A Hypothetical leucine ri 97.9 0.0014 4.7E-08 59.9 20.4 127 27-162 39-168 (379)
158 3rw6_A Nuclear RNA export fact 97.9 2.8E-06 9.7E-11 73.6 1.9 102 55-158 140-257 (267)
159 3rw6_A Nuclear RNA export fact 97.8 3.2E-05 1.1E-09 67.0 5.9 112 76-197 137-259 (267)
160 4h09_A Hypothetical leucine ri 97.5 0.0015 5E-08 59.7 13.1 104 53-161 214-319 (379)
161 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0036 1.2E-07 51.3 6.2 115 78-202 39-170 (197)
162 3rfe_A Platelet glycoprotein I 96.2 0.0092 3.1E-07 45.4 6.2 34 57-90 32-65 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0094 3.2E-07 48.8 6.3 112 53-165 38-170 (197)
164 3rfe_A Platelet glycoprotein I 95.8 0.013 4.3E-07 44.6 5.4 59 7-69 6-68 (130)
165 2lz0_A Uncharacterized protein 63.6 8 0.00027 27.3 3.9 45 67-113 7-52 (100)
166 2lz0_A Uncharacterized protein 50.8 18 0.00062 25.4 4.0 37 53-90 17-53 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=7.4e-25 Score=200.80 Aligned_cols=272 Identities=17% Similarity=0.215 Sum_probs=155.5
Q ss_pred CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551 13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS 92 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 92 (366)
..+.+.+.++.+.+++.+..+++|+.|++++|.++.++....+++|++|++++|.+..++. +..+++|++|++++| .
T Consensus 45 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~ 121 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-N 121 (347)
T ss_dssp TCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-C
T ss_pred cccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-c
Confidence 4456666666666666666677777777777777666555666777777777776666543 666777777777776 4
Q ss_pred CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccc
Q 038551 93 LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADS 172 (366)
Q Consensus 93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 172 (366)
++.++. +..+++|++|++++|.....+..+..+++|++|++++| .+...+. +..+++|++|++.+|.+..
T Consensus 122 i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~------ 191 (347)
T 4fmz_A 122 ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED------ 191 (347)
T ss_dssp CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC------
T ss_pred ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc------
Confidence 555554 66667777777777643333333666777777777763 3444433 5566677777777776653
Q ss_pred cccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCc
Q 038551 173 ILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFND 252 (366)
Q Consensus 173 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 252 (366)
...+..+++|+.+++++|.+..++.+..+.+ ++.|++.++.-..... +..+++|++|++++|.
T Consensus 192 ---------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-----L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 192 ---------ISPLASLTSLHYFTAYVNQITDITPVANMTR-----LNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp ---------CGGGGGCTTCCEEECCSSCCCCCGGGGGCTT-----CCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC
T ss_pred ---------cccccCCCccceeecccCCCCCCchhhcCCc-----CCEEEccCCccCCCcc---hhcCCCCCEEECCCCc
Confidence 1115556666666666666655544332332 3334444432221111 5566667777776666
Q ss_pred cceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc--------ccCCccccccc
Q 038551 253 LEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK--------RLECAELKELP 324 (366)
Q Consensus 253 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~--------~~~~~~L~~L~ 324 (366)
++.++. . ..+++|+.|+++-..+ . .-+.+..+++ |++|++++|+ +..+++|+.|+
T Consensus 255 l~~~~~--~--------~~l~~L~~L~l~~n~l-----~-~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 255 ISDINA--V--------KDLTKLKMLNVGSNQI-----S-DISVLNNLSQ-LNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp CCCCGG--G--------TTCTTCCEEECCSSCC-----C-CCGGGGGCTT-CSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred cCCChh--H--------hcCCCcCEEEccCCcc-----C-CChhhcCCCC-CCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 555421 1 4456666666541110 0 0111222455 6666666655 34556666666
Q ss_pred CCCCCCC
Q 038551 325 LDCNHGL 331 (366)
Q Consensus 325 l~~n~~~ 331 (366)
+++|.+.
T Consensus 318 L~~n~l~ 324 (347)
T 4fmz_A 318 LSQNHIT 324 (347)
T ss_dssp CCSSSCC
T ss_pred ccCCccc
Confidence 6666554
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3.1e-25 Score=210.75 Aligned_cols=308 Identities=18% Similarity=0.165 Sum_probs=211.0
Q ss_pred ccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCC-C-CCCCCccEEEccCCCCc-cccchhhcCCCCCCEEEccCC
Q 038551 14 ENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTE-I-PTCPRLRTLFLPSNHLG-TVSNNFFHSMASLRVLILSYN 90 (366)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~-~i~~~~~~~l~~L~~L~l~~~ 90 (366)
...+++.+.++..+|.+. ++|++|++++|.++.+++ . ..+++|++|++++|.+. .+++..|..+++|++|++++|
T Consensus 12 ~~~~~c~~~~l~~lp~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 12 GYNAICINRGLHQVPELP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TTEEECCSSCCSSCCCCC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccccCcCCCCcccCCCCC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 446788889999998743 899999999999999743 3 89999999999999885 677777899999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEcccccccc-cccc--ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccc
Q 038551 91 RSLENLPLGIFNLVSLQHLDISWTGITT-LPIE--LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVE 167 (366)
Q Consensus 91 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~-l~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 167 (366)
...+..|..++++++|++|++++|.++. ++.. +..+++|++|++++|...+..|...+.++++|++|++.+|.+...
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 4444457789999999999999999874 4443 889999999999996554444555478999999999999988752
Q ss_pred cc--cccc-------------ccCC------chhhhhhhhcCcccceeeeccccchhhH--hHhhhcccCc---------
Q 038551 168 LE--ADSI-------------LFGD------SEVLVEELLVLKHLNLLTITLQSFGALQ--RLLSYCRLGS--------- 215 (366)
Q Consensus 168 ~~--~~~~-------------~~~~------~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~l~~~~~l~~--------- 215 (366)
.. +... .... .......+..+++|+.|++++|.+.+.. .+........
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 10 0000 0000 0000111234567888888888765421 1211110011
Q ss_pred -------------------------ccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccC
Q 038551 216 -------------------------ISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREIC 270 (366)
Q Consensus 216 -------------------------l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~ 270 (366)
-.++.|++..+. +.......+..+++|++|++++|.++.++...+ .
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~ 320 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF--------W 320 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTT--------T
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCcc-ccccchhhcccCCCCCEEECCCCcccccChhHh--------c
Confidence 013334333322 111111236677888888888888777654333 4
Q ss_pred CCCCcceeeee--------------cccceeEEeeccCc-------cccccccccceEEeecCc--------ccCCcccc
Q 038551 271 GFHSLQKVFYK--------------ILKIEARDMACTCS-------QYQACPRGLTKFEEHPLK--------RLECAELK 321 (366)
Q Consensus 271 ~~~~L~~L~l~--------------l~~l~~L~l~~~c~-------~l~~~~~~L~~L~l~~~~--------~~~~~~L~ 321 (366)
.+++|+.|+++ ++.++.|+++ +|. .+..+++ |++|++++|. +..+++|+
T Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS-YNHIRALGDQSFLGLPN-LKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC-SSCCCEECTTTTTTCTT-CCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CcccCCEEECCCCccCCcChhHhcCcccCCEEECC-CCcccccChhhcccccc-ccEEECCCCccccCCHhHhccCCccc
Confidence 57788888877 3455777777 662 1223677 9999999888 46788999
Q ss_pred cccCCCCCCCCce
Q 038551 322 ELPLDCNHGLEQK 334 (366)
Q Consensus 322 ~L~l~~n~~~~~~ 334 (366)
.|++++|++.+..
T Consensus 399 ~L~l~~N~l~~~~ 411 (455)
T 3v47_A 399 KIWLHTNPWDCSC 411 (455)
T ss_dssp EEECCSSCBCCCT
T ss_pred EEEccCCCcccCC
Confidence 9999999887654
No 3
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=5.2e-25 Score=205.14 Aligned_cols=279 Identities=16% Similarity=0.172 Sum_probs=172.6
Q ss_pred CCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcE
Q 038551 32 MWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQH 108 (366)
Q Consensus 32 ~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~ 108 (366)
.+++++.|++.++.+..+|.. ..+++|++|++++|.+..+++..+..+++|++|++++| .++.+ |..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence 357788888888888777765 66778888888888887777655777888888888888 44444 455677888888
Q ss_pred EEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCC----chhhhh
Q 038551 109 LDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGD----SEVLVE 183 (366)
Q Consensus 109 L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~~~~~ 183 (366)
|++++|.++.+|.. +..+++|++|++++| .+..++...+.++++|++|++.+|.+.... +......+ ......
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSCCS
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeeccccccc
Confidence 88888888877765 477888888888874 445555444777788888888888776410 00000000 000000
Q ss_pred hhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEecccccc
Q 038551 184 ELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGEL 263 (366)
Q Consensus 184 ~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~ 263 (366)
.+...+.|+.|++++|.+..++.. ... .++.|++.++.-... ..+..+++|++|++++|.++.+....+
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~~----~~~--~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~-- 268 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVVRGP----VNV--ELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF-- 268 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEEECC----CCS--SCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG--
T ss_pred ccCCCCcceEEECCCCeeeecccc----ccc--cccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHc--
Confidence 111123344444444444333210 011 244455544322221 236667777777777777766644333
Q ss_pred ccccccCCCCCcceeeee-------------cccceeEEeeccCc------cccccccccceEEeecCc-----ccCCcc
Q 038551 264 KRIREICGFHSLQKVFYK-------------ILKIEARDMACTCS------QYQACPRGLTKFEEHPLK-----RLECAE 319 (366)
Q Consensus 264 ~~~~~~~~~~~L~~L~l~-------------l~~l~~L~l~~~c~------~l~~~~~~L~~L~l~~~~-----~~~~~~ 319 (366)
..+++|+.|+++ +++++.|+++ +|. .+..+++ |++|++++|+ +..+++
T Consensus 269 ------~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~ 340 (390)
T 3o6n_A 269 ------VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS-HNHLLHVERNQPQFDR-LENLYLDHNSIVTLKLSTHHT 340 (390)
T ss_dssp ------TTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECC-SSCCCCCGGGHHHHTT-CSEEECCSSCCCCCCCCTTCC
T ss_pred ------cccccCCEEECCCCcCcccCcccCCCCCCCEEECC-CCcceecCccccccCc-CCEEECCCCccceeCchhhcc
Confidence 446667777666 3445666666 552 1222677 9999999988 678889
Q ss_pred cccccCCCCCCCC
Q 038551 320 LKELPLDCNHGLE 332 (366)
Q Consensus 320 L~~L~l~~n~~~~ 332 (366)
|+.|++++|++..
T Consensus 341 L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 341 LKNLTLSHNDWDC 353 (390)
T ss_dssp CSEEECCSSCEEH
T ss_pred CCEEEcCCCCccc
Confidence 9999999998743
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=9.2e-25 Score=200.17 Aligned_cols=266 Identities=18% Similarity=0.219 Sum_probs=212.2
Q ss_pred CCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhh
Q 038551 21 GVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGI 100 (366)
Q Consensus 21 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~ 100 (366)
..++.++..+..+++|+.|++.++.+..++....+++|++|++++|.+..+++ +..+++|++|++++| .++.++ .+
T Consensus 31 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~ 106 (347)
T 4fmz_A 31 KASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-AL 106 (347)
T ss_dssp CSCTTSEECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GG
T ss_pred ccccCCcccchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HH
Confidence 34445555566789999999999999998877889999999999999998877 889999999999999 677776 48
Q ss_pred cCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchh
Q 038551 101 FNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEV 180 (366)
Q Consensus 101 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 180 (366)
.++++|++|++++|.++.++. +..+++|++|++++|......+. +..+++|++|++.+|.+.. .
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~-------------~ 170 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD-------------V 170 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC-------------C
T ss_pred cCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC-------------c
Confidence 999999999999999998877 88999999999999777776655 8899999999999999875 1
Q ss_pred hhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccc
Q 038551 181 LVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDA 260 (366)
Q Consensus 181 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~ 260 (366)
..+..+++|+.|++++|.+..++.+.. ++. +..+++..+.-..... +..+++|++|++++|.++.++. .
T Consensus 171 --~~~~~l~~L~~L~l~~n~l~~~~~~~~---l~~--L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~-~ 239 (347)
T 4fmz_A 171 --TPIANLTDLYSLSLNYNQIEDISPLAS---LTS--LHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP-L 239 (347)
T ss_dssp --GGGGGCTTCSEEECTTSCCCCCGGGGG---CTT--CCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred --hhhccCCCCCEEEccCCcccccccccC---CCc--cceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc-h
Confidence 127789999999999999888776444 444 4446665543222222 7889999999999998887653 1
Q ss_pred cccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc------ccCCcccccccCCCCCCCCc
Q 038551 261 GELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK------RLECAELKELPLDCNHGLEQ 333 (366)
Q Consensus 261 ~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~------~~~~~~L~~L~l~~n~~~~~ 333 (366)
..+++|+.|+++-..+ . ..+.+..+++ |++|++++|. +..+++|+.|++++|.+.+.
T Consensus 240 ---------~~l~~L~~L~l~~n~l-----~-~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ 302 (347)
T 4fmz_A 240 ---------ANLSQLTWLEIGTNQI-----S-DINAVKDLTK-LKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNE 302 (347)
T ss_dssp ---------TTCTTCCEEECCSSCC-----C-CCGGGTTCTT-CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGG
T ss_pred ---------hcCCCCCEEECCCCcc-----C-CChhHhcCCC-cCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCc
Confidence 6688888888762222 1 1223444788 9999999998 67889999999999998643
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=2.2e-24 Score=206.23 Aligned_cols=292 Identities=23% Similarity=0.253 Sum_probs=196.0
Q ss_pred eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCE
Q 038551 7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRV 84 (366)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~ 84 (366)
|.|..+ ...+.+.+.++..+|.-. .++++.|++++|.++.++.. ..+++|++|++++|.+..+.+..|..+++|++
T Consensus 7 C~C~~~-~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 84 (477)
T 2id5_A 7 CECSAQ-DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT 84 (477)
T ss_dssp CEEETT-TTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CeECCC-CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCE
Confidence 666433 457888888888887522 36899999999999987543 78899999999999998886666889999999
Q ss_pred EEccCCCCCCCcch-hhcCCCCCcEEEccccccccc-cccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecC
Q 038551 85 LILSYNRSLENLPL-GIFNLVSLQHLDISWTGITTL-PIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC 162 (366)
Q Consensus 85 L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (366)
|++++| .++.+|. .+.++++|++|++++|.+..+ +..+..+++|++|++++| .+..++...+.++++|++|++.+|
T Consensus 85 L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 85 LGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp EECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESC
T ss_pred EECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCC
Confidence 999998 6676764 468889999999999988865 445888899999999984 555554444788889999999998
Q ss_pred CccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCC--------------
Q 038551 163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNN-------------- 228 (366)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~-------------- 228 (366)
.+.. .....+..+++|+.|++++|.+..++.. .+..+.+ ++.|++.++..
T Consensus 163 ~l~~-------------~~~~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 163 NLTS-------------IPTEALSHLHGLIVLRLRHLNINAIRDY-SFKRLYR--LKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp CCSS-------------CCHHHHTTCTTCCEEEEESCCCCEECTT-CSCSCTT--CCEEEEECCTTCCEECTTTTTTCCC
T ss_pred cCcc-------------cChhHhcccCCCcEEeCCCCcCcEeChh-hcccCcc--cceeeCCCCccccccCcccccCccc
Confidence 8875 3445567778888888877766654321 1222222 23333333222
Q ss_pred ---------CCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccc
Q 038551 229 ---------SNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQA 299 (366)
Q Consensus 229 ---------~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~ 299 (366)
++..+...+..+++|++|++++|.++.++...+ ..+++|+.|+++-..+..+. -..+..
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~----~~~~~~ 294 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML--------HELLRLQEIQLVGGQLAVVE----PYAFRG 294 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC--------TTCTTCCEEECCSSCCSEEC----TTTBTT
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc--------cccccCCEEECCCCccceEC----HHHhcC
Confidence 122222234555566666666665555543322 33455555555311111110 112333
Q ss_pred cccccceEEeecCc--------ccCCcccccccCCCCCCC
Q 038551 300 CPRGLTKFEEHPLK--------RLECAELKELPLDCNHGL 331 (366)
Q Consensus 300 ~~~~L~~L~l~~~~--------~~~~~~L~~L~l~~n~~~ 331 (366)
+++ |++|+|++|. +..+++|+.|++++|++.
T Consensus 295 l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 295 LNY-LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTT-CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccc-CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 677 9999998887 567888999999998864
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.7e-24 Score=205.64 Aligned_cols=264 Identities=17% Similarity=0.167 Sum_probs=200.2
Q ss_pred cEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEccccc
Q 038551 37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHLDISWTG 115 (366)
Q Consensus 37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~ 115 (366)
+.++.+++.++.+|.. -.++++.|++++|.+..+++..|..+++|++|++++| .++.+ |..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc
Confidence 5788888889888864 2358999999999999987777999999999999999 55544 7789999999999999999
Q ss_pred ccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccccee
Q 038551 116 ITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLL 194 (366)
Q Consensus 116 ~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 194 (366)
++.+|.. +..+++|++|++++| .+..++...+.++++|++|++.+|.+.. .....+..+++|+.|
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVY-------------ISHRAFSGLNSLEQL 157 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCE-------------ECTTSSTTCTTCCEE
T ss_pred CCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccce-------------eChhhccCCCCCCEE
Confidence 9988875 789999999999995 5555544448899999999999999875 455677889999999
Q ss_pred eeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccC-ccceEeccccccccccccCCCC
Q 038551 195 TITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN-DLEELKIDAGELKRIREICGFH 273 (366)
Q Consensus 195 ~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~l~~~~~~~~~~~~~~~~~ 273 (366)
++++|.+..++.- .+.++.+|....+.-+.+..+.. ..+..+++|++|++++| .+..++.... ...
T Consensus 158 ~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------~~~ 224 (477)
T 2id5_A 158 TLEKCNLTSIPTE-ALSHLHGLIVLRLRHLNINAIRD---YSFKRLYRLKVLEISHWPYLDTMTPNCL---------YGL 224 (477)
T ss_dssp EEESCCCSSCCHH-HHTTCTTCCEEEEESCCCCEECT---TCSCSCTTCCEEEEECCTTCCEECTTTT---------TTC
T ss_pred ECCCCcCcccChh-HhcccCCCcEEeCCCCcCcEeCh---hhcccCcccceeeCCCCccccccCcccc---------cCc
Confidence 9999988876531 13344442223333333333322 23778899999999998 5666654332 234
Q ss_pred Ccceeeee--------------cccceeEEeeccCc-------cccccccccceEEeecCc--------ccCCccccccc
Q 038551 274 SLQKVFYK--------------ILKIEARDMACTCS-------QYQACPRGLTKFEEHPLK--------RLECAELKELP 324 (366)
Q Consensus 274 ~L~~L~l~--------------l~~l~~L~l~~~c~-------~l~~~~~~L~~L~l~~~~--------~~~~~~L~~L~ 324 (366)
+|+.|+++ +++++.|+++ ++. .+..+++ |++|+|++|. +..+++|+.|+
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS-YNPISTIEGSMLHELLR-LQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECC-SSCCCEECTTSCTTCTT-CCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECC-CCcCCccChhhcccccc-CCEEECCCCccceECHHHhcCcccCCEEE
Confidence 67777766 3445667776 552 1233678 9999999987 67899999999
Q ss_pred CCCCCCC
Q 038551 325 LDCNHGL 331 (366)
Q Consensus 325 l~~n~~~ 331 (366)
+++|.+.
T Consensus 303 L~~N~l~ 309 (477)
T 2id5_A 303 VSGNQLT 309 (477)
T ss_dssp CCSSCCS
T ss_pred CCCCcCc
Confidence 9999875
No 7
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1e-23 Score=201.06 Aligned_cols=117 Identities=18% Similarity=0.345 Sum_probs=93.8
Q ss_pred CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551 13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS 92 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 92 (366)
..+.+.+.++++..+|.+..+++|+.|++++|.++.++....+++|++|++++|.+..+++ +..+++|++|++++| .
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~ 123 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-Q 123 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-C
Confidence 4567788888888888888899999999999998887767888999999999998888776 788999999999998 6
Q ss_pred CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEc
Q 038551 93 LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNL 134 (366)
Q Consensus 93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l 134 (366)
++.++. +.++++|++|++++|.+..++. +..+++|++|++
T Consensus 124 l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 163 (466)
T 1o6v_A 124 ITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSF 163 (466)
T ss_dssp CCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEE
T ss_pred CCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeec
Confidence 676665 7888999999999888776653 444444444444
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=3.8e-24 Score=210.53 Aligned_cols=181 Identities=19% Similarity=0.174 Sum_probs=141.2
Q ss_pred eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCE
Q 038551 7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRV 84 (366)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~ 84 (366)
|.|. +....+++.+.++..+|.-- .+.++.|++++|.++.+++. ..+++|++|++++|.+..+.+..|..+++|++
T Consensus 8 C~~~-~~~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 85 (606)
T 3t6q_A 8 CIEK-EVNKTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDT 85 (606)
T ss_dssp CEEE-ETTTEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred eecc-cCCceEECCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCe
Confidence 4443 34557889999999997522 25899999999999997543 89999999999999998887776999999999
Q ss_pred EEccCCCCCCCcchhhcCCCCCcEEEccccccccc-cccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCC
Q 038551 85 LILSYNRSLENLPLGIFNLVSLQHLDISWTGITTL-PIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECG 163 (366)
Q Consensus 85 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 163 (366)
|++++|......|..++++++|++|++++|.++.+ +..+..+++|++|++++| .+..++...+..+++|++|++.+|.
T Consensus 86 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 86 LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp EECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred eeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCc
Confidence 99999944445577889999999999999999887 456899999999999995 5555432225568999999999998
Q ss_pred ccccccccccccCCchhhhhhhhcCcccc--eeeeccccchh
Q 038551 164 FNVELEADSILFGDSEVLVEELLVLKHLN--LLTITLQSFGA 203 (366)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~ 203 (366)
+.. ..+..+..+++|+ .|++++|.+.+
T Consensus 165 l~~-------------~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 165 IHY-------------LSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp CCE-------------ECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccc-------------cChhhhhhhcccceeEEecCCCccCc
Confidence 875 4455566666666 66777666554
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=2.4e-24 Score=211.94 Aligned_cols=157 Identities=22% Similarity=0.192 Sum_probs=126.6
Q ss_pred eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCE
Q 038551 7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRV 84 (366)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~ 84 (366)
|.|. .....+.+.+.++..+|.-. .++++.|++++|.++.++.. .++++|++|++++|.+..+++..|..+++|++
T Consensus 7 c~~~-~~~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 7 CIEV-VPNITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84 (606)
T ss_dssp CEEE-ETTTEEECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred ceec-CCCCceEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence 5542 34457889999999997532 27899999999999987663 78999999999999998887777889999999
Q ss_pred EEccCCCCCCCcchhhcCCCCCcEEEcccccccccc-ccccCCCCCCEEEcccccccC-ccChhhhcCCcCCcEEEeecC
Q 038551 85 LILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP-IELKYLVNLKCLNLEYTFRLS-RIPQQVISDLKMLRALRMFEC 162 (366)
Q Consensus 85 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 162 (366)
|++++|...+..|..++++++|++|++++|.++.++ ..++.+++|++|++++|...+ .+|.. +.++++|++|++.+|
T Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYN 163 (606)
T ss_dssp EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSS
T ss_pred eECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCC
Confidence 999999433344778899999999999999988776 458899999999999864443 45665 888999999999988
Q ss_pred Cccc
Q 038551 163 GFNV 166 (366)
Q Consensus 163 ~~~~ 166 (366)
.+.+
T Consensus 164 ~l~~ 167 (606)
T 3vq2_A 164 YIQT 167 (606)
T ss_dssp CCCE
T ss_pred ccee
Confidence 7765
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=9.7e-24 Score=207.20 Aligned_cols=277 Identities=16% Similarity=0.182 Sum_probs=159.2
Q ss_pred CCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEE
Q 038551 33 WKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHL 109 (366)
Q Consensus 33 ~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L 109 (366)
+.+++.+++.++.+..+|.. ..+++|++|++++|.+..+++..|..+++|++|++++| .++.+| ..++++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEE
Confidence 45667777777777776654 56677777777777776666655677777777777777 344333 445677777777
Q ss_pred Ecccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCC----chhhhhh
Q 038551 110 DISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGD----SEVLVEE 184 (366)
Q Consensus 110 ~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~~~~~~ 184 (366)
++++|.++.+|.. ++.+++|++|++++| .+..++...+.++++|++|++.+|.+.... +....... ....+..
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSCCSE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCcccc
Confidence 7777777766655 467777777777774 344444433667777777777777665410 00000000 0000001
Q ss_pred hhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccc
Q 038551 185 LLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELK 264 (366)
Q Consensus 185 l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~ 264 (366)
+.....|+.|++++|.+..++... .. .+..|++.++.-... ..+..+++|++|++++|.++.+....+
T Consensus 207 l~~~~~L~~L~ls~n~l~~~~~~~----~~--~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~--- 274 (597)
T 3oja_B 207 LAIPIAVEELDASHNSINVVRGPV----NV--ELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF--- 274 (597)
T ss_dssp EECCTTCSEEECCSSCCCEEECSC----CS--CCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG---
T ss_pred ccCCchhheeeccCCccccccccc----CC--CCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHh---
Confidence 112233444444444443322110 01 234444444332222 235666777777777776666543332
Q ss_pred cccccCCCCCcceeeee-------------cccceeEEeeccCc------cccccccccceEEeecCc-----ccCCccc
Q 038551 265 RIREICGFHSLQKVFYK-------------ILKIEARDMACTCS------QYQACPRGLTKFEEHPLK-----RLECAEL 320 (366)
Q Consensus 265 ~~~~~~~~~~L~~L~l~-------------l~~l~~L~l~~~c~------~l~~~~~~L~~L~l~~~~-----~~~~~~L 320 (366)
..+++|+.|+++ +++++.|+++ +|. .+..+|+ |+.|+|++|+ +..++.|
T Consensus 275 -----~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls-~N~l~~i~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~L 347 (597)
T 3oja_B 275 -----VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS-HNHLLHVERNQPQFDR-LENLYLDHNSIVTLKLSTHHTL 347 (597)
T ss_dssp -----TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECC-SSCCCCCGGGHHHHTT-CSEEECCSSCCCCCCCCTTCCC
T ss_pred -----cCccCCCEEECCCCCCCCCCcccccCCCCcEEECC-CCCCCccCcccccCCC-CCEEECCCCCCCCcChhhcCCC
Confidence 445666666665 3444566666 552 1222677 9999999888 6778899
Q ss_pred ccccCCCCCCC
Q 038551 321 KELPLDCNHGL 331 (366)
Q Consensus 321 ~~L~l~~n~~~ 331 (366)
+.|++++|++.
T Consensus 348 ~~L~l~~N~~~ 358 (597)
T 3oja_B 348 KNLTLSHNDWD 358 (597)
T ss_dssp SEEECCSSCEE
T ss_pred CEEEeeCCCCC
Confidence 99999999874
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=6.5e-25 Score=216.91 Aligned_cols=159 Identities=16% Similarity=0.261 Sum_probs=129.3
Q ss_pred eeeccCc-CCccEEEecCCCcccC--CCCCCCCcccEEEcccCCc-----------------------------------
Q 038551 5 IASTINK-EKENFLVLAGVGLTEA--PSIGMWKETTRMSLMQNAI----------------------------------- 46 (366)
Q Consensus 5 ~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~----------------------------------- 46 (366)
.++.|.. .....+++.++++.+. +.++++++|+.|++++|.+
T Consensus 73 ~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~ 152 (636)
T 4eco_A 73 PGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDY 152 (636)
T ss_dssp TTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCC
T ss_pred CCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhcc
Confidence 5555543 4677778888888755 6799999999999988843
Q ss_pred -------------------------------------------cccCCC-CCCCCccEEEccCCCCcc------------
Q 038551 47 -------------------------------------------QNLTEI-PTCPRLRTLFLPSNHLGT------------ 70 (366)
Q Consensus 47 -------------------------------------------~~l~~~-~~~~~L~~L~l~~~~~~~------------ 70 (366)
+++|.. ..+++|++|++++|.+..
T Consensus 153 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 232 (636)
T 4eco_A 153 DPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232 (636)
T ss_dssp CGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred CchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCcccccccccccccccc
Confidence 235544 678899999999999877
Q ss_pred ------ccchhhc--CCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccc-cc--cccccccCC------CCCCEEE
Q 038551 71 ------VSNNFFH--SMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTG-IT--TLPIELKYL------VNLKCLN 133 (366)
Q Consensus 71 ------i~~~~~~--~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~--~l~~~l~~l------~~L~~L~ 133 (366)
+|+. ++ .+++|++|++++|...+.+|..++++++|++|++++|. ++ .+|..++.+ ++|++|+
T Consensus 233 ~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 233 EYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp HHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred chhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence 7877 67 89999999999997788889889999999999999997 77 488777765 8999999
Q ss_pred cccccccCccCh--hhhcCCcCCcEEEeecCCccc
Q 038551 134 LEYTFRLSRIPQ--QVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 134 l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~ 166 (366)
+++| .+..+|. . +.++++|++|++.+|.+.+
T Consensus 312 L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 312 IGYN-NLKTFPVETS-LQKMKKLGMLECLYNQLEG 344 (636)
T ss_dssp CCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCCEE
T ss_pred CCCC-cCCccCchhh-hccCCCCCEEeCcCCcCcc
Confidence 9985 4558887 5 8899999999999998874
No 12
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.1e-23 Score=199.96 Aligned_cols=270 Identities=18% Similarity=0.151 Sum_probs=192.5
Q ss_pred CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551 12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 91 (366)
...+.+++.++.+.++|.++.+++|++|++++|.++.++ ...+++|++|++++|.+..++ ++.+++|++|++++|
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N- 116 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN- 116 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-
Confidence 456788899999999998999999999999999999885 578899999999999998875 778999999999999
Q ss_pred CCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccccc
Q 038551 92 SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEAD 171 (366)
Q Consensus 92 ~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 171 (366)
.++.+| ++.+++|++|++++|.++.++ ++.+++|++|++++|..++.++ +..+++|++|++.+|.+.+
T Consensus 117 ~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~----- 184 (457)
T 3bz5_A 117 KLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE----- 184 (457)
T ss_dssp CCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC-----
T ss_pred cCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce-----
Confidence 666675 788999999999999998875 7889999999999976777763 6688889999999998874
Q ss_pred ccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccC
Q 038551 172 SILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN 251 (366)
Q Consensus 172 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 251 (366)
.+ +..+++|+.|++++|.+..++ +..+++ +..|+++.+. ++..+ +..+++|+.|++++|
T Consensus 185 ---------l~--l~~l~~L~~L~l~~N~l~~~~----l~~l~~--L~~L~Ls~N~-l~~ip---~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 185 ---------LD--VSQNKLLNRLNCDTNNITKLD----LNQNIQ--LTFLDCSSNK-LTEID---VTPLTQLTYFDCSVN 243 (457)
T ss_dssp ---------CC--CTTCTTCCEEECCSSCCSCCC----CTTCTT--CSEEECCSSC-CSCCC---CTTCTTCSEEECCSS
T ss_pred ---------ec--cccCCCCCEEECcCCcCCeec----cccCCC--CCEEECcCCc-ccccC---ccccCCCCEEEeeCC
Confidence 11 556677777777777666552 233333 3334444322 12222 456667777777777
Q ss_pred ccceEeccccccccccccCCCCCcceeeee----------------------cccceeEEeeccCccc------------
Q 038551 252 DLEELKIDAGELKRIREICGFHSLQKVFYK----------------------ILKIEARDMACTCSQY------------ 297 (366)
Q Consensus 252 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~----------------------l~~l~~L~l~~~c~~l------------ 297 (366)
.++.++. ..+++|+.|+++ ++.++.|+++ +|..+
T Consensus 244 ~l~~~~~-----------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls-~n~~l~~l~~~~~~L~~ 311 (457)
T 3bz5_A 244 PLTELDV-----------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVT-HNTQLYLLDCQAAGITE 311 (457)
T ss_dssp CCSCCCC-----------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCT-TCTTCCEEECTTCCCSC
T ss_pred cCCCcCH-----------HHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECC-CCcccceeccCCCcceE
Confidence 6665442 223333333322 1222333333 33211
Q ss_pred ---cccccccceEEeecCc-----ccCCcccccccCCCCCCCC
Q 038551 298 ---QACPRGLTKFEEHPLK-----RLECAELKELPLDCNHGLE 332 (366)
Q Consensus 298 ---~~~~~~L~~L~l~~~~-----~~~~~~L~~L~l~~n~~~~ 332 (366)
...|+ |++|++++|. +..|++|+.|++++|++.+
T Consensus 312 L~l~~~~~-L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 312 LDLSQNPK-LVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCCTTCTT-CCEEECTTCCCSCCCCTTCTTCSEEECCSSCCCB
T ss_pred echhhccc-CCEEECCCCcccccccccCCcCcEEECCCCCCCC
Confidence 11355 8888888777 6788888889998888764
No 13
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=2.3e-24 Score=198.13 Aligned_cols=183 Identities=22% Similarity=0.289 Sum_probs=154.9
Q ss_pred cCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEE
Q 038551 9 INKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLI 86 (366)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~ 86 (366)
|.......+++.++++..+|.- -.++|+.|++++|.++.++.. ..+++|++|++++|.+..+++..+..+++|++|+
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCCeEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 3344555688889999999752 236999999999999998763 8899999999999999988777799999999999
Q ss_pred ccCCCCCCCcchh-hcCCCCCcEEEccccccccccc--cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCC
Q 038551 87 LSYNRSLENLPLG-IFNLVSLQHLDISWTGITTLPI--ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECG 163 (366)
Q Consensus 87 l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 163 (366)
+++| .++.+|.. ++++++|++|++++|.++.+|. .+..+++|++|++++|+.++.++...+.++++|++|++.+|.
T Consensus 107 Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 107 LSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 9999 66777755 8899999999999999998887 588999999999999767777766558899999999999999
Q ss_pred ccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHh
Q 038551 164 FNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQR 206 (366)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 206 (366)
+.+ ..+..+..+++|+.|++++|.+..++.
T Consensus 186 l~~-------------~~~~~l~~l~~L~~L~l~~n~l~~~~~ 215 (353)
T 2z80_A 186 LQS-------------YEPKSLKSIQNVSHLILHMKQHILLLE 215 (353)
T ss_dssp CCE-------------ECTTTTTTCSEEEEEEEECSCSTTHHH
T ss_pred cCc-------------cCHHHHhccccCCeecCCCCccccchh
Confidence 886 556778889999999999888766543
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=1.6e-23 Score=203.57 Aligned_cols=149 Identities=24% Similarity=0.216 Sum_probs=125.7
Q ss_pred EEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCC
Q 038551 16 FLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL 93 (366)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~ 93 (366)
.+++.++++..+|... .++|+.|++++|.++.+++. ..+++|++|++++|.+..+++..|..+++|++|++++| .+
T Consensus 9 ~c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l 86 (549)
T 2z81_A 9 VCDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HL 86 (549)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CC
T ss_pred eEECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-cc
Confidence 4677888899987532 38999999999999987543 88999999999999998888777899999999999999 55
Q ss_pred CCcc-hhhcCCCCCcEEEcccccccc--ccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551 94 ENLP-LGIFNLVSLQHLDISWTGITT--LPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 94 ~~l~-~~~~~l~~L~~L~l~~~~~~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
+.++ ..++++++|++|++++|.++. +|..++.+++|++|++++|..++.++...+.++++|++|++.+|.+.+
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 5555 458999999999999999884 466789999999999999766788876558899999999999998876
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=6e-25 Score=217.15 Aligned_cols=291 Identities=13% Similarity=0.139 Sum_probs=168.2
Q ss_pred CCcccCC-CCCCCCcccEEEcccCCccc------------------cCCC-C--CCCCccEEEccCCCC-ccccchhhcC
Q 038551 22 VGLTEAP-SIGMWKETTRMSLMQNAIQN------------------LTEI-P--TCPRLRTLFLPSNHL-GTVSNNFFHS 78 (366)
Q Consensus 22 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~~-~~i~~~~~~~ 78 (366)
+.+..+| .++++++|+.|++++|.++. +|.. . .+++|++|++++|.+ +.+|.. +..
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~ 271 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKA 271 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTT
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-Hhc
Confidence 3444554 36677777777777777777 6666 5 677777777777765 345544 677
Q ss_pred CCCCCEEEccCCCCCC--CcchhhcCC------CCCcEEEccccccccccc--cccCCCCCCEEEcccccccCccChhhh
Q 038551 79 MASLRVLILSYNRSLE--NLPLGIFNL------VSLQHLDISWTGITTLPI--ELKYLVNLKCLNLEYTFRLSRIPQQVI 148 (366)
Q Consensus 79 l~~L~~L~l~~~~~~~--~l~~~~~~l------~~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~ 148 (366)
+++|++|++++|..++ .+|..++++ ++|++|++++|.++.+|. .++.+++|++|++++|...+.+| . +
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~ 349 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-F 349 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-C
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-h
Confidence 7777777777774133 466666655 777777777777777776 67777777777777754444666 3 6
Q ss_pred cCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcc-cceeeeccccchhhHhHhhhcccCcc-----------
Q 038551 149 SDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKH-LNLLTITLQSFGALQRLLSYCRLGSI----------- 216 (366)
Q Consensus 149 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~~~l~~l----------- 216 (366)
..+++|++|++.+|.+. ..+..+..+++ |+.|++++|.+..++.......+.+|
T Consensus 350 ~~l~~L~~L~L~~N~l~--------------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT--------------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp EEEEEESEEECCSSEEE--------------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCCCCCCEEECCCCccc--------------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCC
Confidence 66677777777777655 22333444444 55555555444433321111111111
Q ss_pred ------------------cceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCccee
Q 038551 217 ------------------STQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKV 278 (366)
Q Consensus 217 ------------------~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L 278 (366)
.++.|+++.+.- ...+...+..+++|++|++++|.++.++......... ....+++|+.|
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~-~~~~l~~L~~L 493 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE-NFKNTYLLTSI 493 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE-ECTTGGGCCEE
T ss_pred CcchhhhcccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc-cccccCCccEE
Confidence 234444444321 2222222445677777777777776665433210000 00122367777
Q ss_pred eee---------------cccceeEEeeccCc------cccccccccceEEeec------Cc--------ccCCcccccc
Q 038551 279 FYK---------------ILKIEARDMACTCS------QYQACPRGLTKFEEHP------LK--------RLECAELKEL 323 (366)
Q Consensus 279 ~l~---------------l~~l~~L~l~~~c~------~l~~~~~~L~~L~l~~------~~--------~~~~~~L~~L 323 (366)
+++ +++++.|+++ ++. .+..+++ |++|++++ |. +..+++|+.|
T Consensus 494 ~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls-~N~l~~ip~~~~~l~~-L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 494 DLRFNKLTKLSDDFRATTLPYLVGIDLS-YNSFSKFPTQPLNSST-LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp ECCSSCCCBCCGGGSTTTCTTCCEEECC-SSCCSSCCCGGGGCSS-CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ECcCCcCCccChhhhhccCCCcCEEECC-CCCCCCcChhhhcCCC-CCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 765 2334666666 552 1222566 88888844 32 5667888888
Q ss_pred cCCCCCCCCce
Q 038551 324 PLDCNHGLEQK 334 (366)
Q Consensus 324 ~l~~n~~~~~~ 334 (366)
++++|.+ +.+
T Consensus 572 ~Ls~N~l-~~i 581 (636)
T 4eco_A 572 QIGSNDI-RKV 581 (636)
T ss_dssp ECCSSCC-CBC
T ss_pred ECCCCcC-Ccc
Confidence 8888887 443
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=1.5e-23 Score=211.52 Aligned_cols=132 Identities=21% Similarity=0.208 Sum_probs=67.5
Q ss_pred CCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 038551 31 GMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLD 110 (366)
Q Consensus 31 ~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 110 (366)
.++++|+.|++++|.+....+...+++|++|++++|.+....+. ++.+++|++|++++|...+.+|..++++++|++|+
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred ccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence 34444444444444444322224556666666666666543333 56666666666666644445555566666666666
Q ss_pred ccccccc-cccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551 111 ISWTGIT-TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN 165 (366)
Q Consensus 111 l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 165 (366)
+++|.+. .+|.. .+++|++|++++|...+.+|..+...+++|++|++.+|.+.
T Consensus 254 Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~ 307 (768)
T 3rgz_A 254 ISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307 (768)
T ss_dssp CCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE
T ss_pred CCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC
Confidence 6666554 22221 44555555555543333444431122355555555555544
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=4.4e-23 Score=196.61 Aligned_cols=292 Identities=18% Similarity=0.201 Sum_probs=164.5
Q ss_pred CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551 12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 91 (366)
...+.+++.++.+.+++.+.++++|+.|++++|.+..++....+++|++|++++|.+..+++ +..+++|++|++++|
T Consensus 68 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n- 144 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN- 144 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEE-
T ss_pred cCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCC-
Confidence 45678888888888886689999999999999999887767888999999999998888775 788999999999988
Q ss_pred CCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccccc
Q 038551 92 SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEAD 171 (366)
Q Consensus 92 ~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 171 (366)
.+..++. +..+++|++|++. +.+..++. +..+++|++|++++| .+..++. +..+++|++|++.+|.+.+...+.
T Consensus 145 ~l~~~~~-~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~ 218 (466)
T 1o6v_A 145 TISDISA-LSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATNNQISDITPLG 218 (466)
T ss_dssp EECCCGG-GTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCCGGGG
T ss_pred ccCCChh-hccCCcccEeecC-CcccCchh-hccCCCCCEEECcCC-cCCCChh--hccCCCCCEEEecCCccccccccc
Confidence 5555543 5555555555553 22222222 445555555555552 2333322 444455555555555444310000
Q ss_pred cccc-------CCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCc
Q 038551 172 SILF-------GDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLR 244 (366)
Q Consensus 172 ~~~~-------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~ 244 (366)
.... ...-.....+..+++|+.|++++|.+..++.+..+. + ++.|++.++.-.... .+..+++|+
T Consensus 219 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~---~--L~~L~l~~n~l~~~~---~~~~l~~L~ 290 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLT---K--LTELKLGANQISNIS---PLAGLTALT 290 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCT---T--CSEEECCSSCCCCCG---GGTTCTTCS
T ss_pred ccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCC---C--CCEEECCCCccCccc---cccCCCccC
Confidence 0000 000000123444555555555555554443322222 2 222333332211111 144555666
Q ss_pred EEEeccCccceEeccccccccccccCCCCCcceeeee------------cccceeEEeeccCc-----cccccccccceE
Q 038551 245 TLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK------------ILKIEARDMACTCS-----QYQACPRGLTKF 307 (366)
Q Consensus 245 ~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~------------l~~l~~L~l~~~c~-----~l~~~~~~L~~L 307 (366)
+|++++|.++.++. ...+++|+.|+++ ++.++.|+++ +|. .+..+++ |+.|
T Consensus 291 ~L~L~~n~l~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~l~~l~~-L~~L 358 (466)
T 1o6v_A 291 NLELNENQLEDISP----------ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY-NNKVSDVSSLANLTN-INWL 358 (466)
T ss_dssp EEECCSSCCSCCGG----------GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECC-SSCCCCCGGGTTCTT-CCEE
T ss_pred eEEcCCCcccCchh----------hcCCCCCCEEECcCCcCCCchhhccCccCCEeECC-CCccCCchhhccCCC-CCEE
Confidence 66666655544322 1445666666665 3344555555 552 1222566 7777
Q ss_pred EeecCc------ccCCcccccccCCCCCCCC
Q 038551 308 EEHPLK------RLECAELKELPLDCNHGLE 332 (366)
Q Consensus 308 ~l~~~~------~~~~~~L~~L~l~~n~~~~ 332 (366)
++++|+ +..+++|+.|++++|.+.+
T Consensus 359 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 359 SAGHNQISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred eCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence 777776 5667777777777776543
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=1.1e-23 Score=212.52 Aligned_cols=175 Identities=19% Similarity=0.259 Sum_probs=118.5
Q ss_pred CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCC-CCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCC
Q 038551 12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTE-IPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN 90 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~ 90 (366)
...+.+++.++.+.+...+..+++|+.|++++|.+....+ ...+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257 (768)
T ss_dssp TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS
T ss_pred CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC
Confidence 3556677777777766556788899999999998887443 478889999999998886444444888888888888888
Q ss_pred CCCCCcchhhcCCCCCcEEEccccccc-cccccccCC-CCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccc
Q 038551 91 RSLENLPLGIFNLVSLQHLDISWTGIT-TLPIELKYL-VNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVEL 168 (366)
Q Consensus 91 ~~~~~l~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 168 (366)
...+.+|.. .+++|++|++++|.++ .+|..+... ++|++|++++|...+.+|.. +.++++|++|++.+|.+.+
T Consensus 258 ~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~-- 332 (768)
T 3rgz_A 258 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSG-- 332 (768)
T ss_dssp CCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEE--
T ss_pred cccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccC--
Confidence 544445542 6677777777777766 666665543 77777777775555555554 6677777777777776653
Q ss_pred cccccccCCchhhh-hhhhcCcccceeeeccccch
Q 038551 169 EADSILFGDSEVLV-EELLVLKHLNLLTITLQSFG 202 (366)
Q Consensus 169 ~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 202 (366)
..+ ..+..+++|+.|++++|.+.
T Consensus 333 -----------~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 333 -----------ELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp -----------ECCHHHHTTCTTCCEEECCSSEEE
T ss_pred -----------cCCHHHHhcCCCCCEEeCcCCccC
Confidence 222 22455555666666555543
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=5.6e-23 Score=204.89 Aligned_cols=173 Identities=19% Similarity=0.173 Sum_probs=134.9
Q ss_pred cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551 15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS 92 (366)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 92 (366)
..+++.+.++..+|.... +++++|++++|.++.++.. ..+++|++|++++|.+..+++..+..+++|++|++++| .
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-E 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-C
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-c
Confidence 578888889998875332 7899999999999987754 78899999999999998887777889999999999999 6
Q ss_pred CCCcch-hhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccc
Q 038551 93 LENLPL-GIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEA 170 (366)
Q Consensus 93 ~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 170 (366)
++.+|. .+.++++|++|++++|.++.++. .++.+++|++|++++|...+..+. .+.++++|++|++.+|.+.+
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~---- 159 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQA---- 159 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCC----
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccc----
Confidence 677775 58899999999999999887764 588999999999999644444343 37889999999999998875
Q ss_pred cccccCCchhhhhhh--hcCcccceeeeccccchh
Q 038551 171 DSILFGDSEVLVEEL--LVLKHLNLLTITLQSFGA 203 (366)
Q Consensus 171 ~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~ 203 (366)
.....+ ..+++|+.|++++|.+..
T Consensus 160 ---------~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 160 ---------LKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp ---------BCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred ---------cCHHHhhccccccccEEECCCCcccc
Confidence 222222 234666667766665543
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=7.3e-23 Score=201.37 Aligned_cols=126 Identities=23% Similarity=0.313 Sum_probs=100.9
Q ss_pred CCccEEEecCCCcccCC--CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEc
Q 038551 12 EKENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLIL 87 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l 87 (366)
...+.+++.++.+..++ .+.++++|++|++++|.++.+++. ..+++|++|++++|.+..+++..|..+++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 45677888888888883 588889999999999988887543 78889999999999888876555888899999999
Q ss_pred cCCCCCCCcc-hhhcCCCCCcEEEccccccc--cccccccCCCCCCEEEccccc
Q 038551 88 SYNRSLENLP-LGIFNLVSLQHLDISWTGIT--TLPIELKYLVNLKCLNLEYTF 138 (366)
Q Consensus 88 ~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~ 138 (366)
++| .+..++ ..++++++|++|++++|.++ .+|..++++++|++|++++|.
T Consensus 112 ~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 112 VET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp TTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred cCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 988 455444 56788888888888888877 467778888888888888753
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=8.5e-23 Score=200.90 Aligned_cols=78 Identities=23% Similarity=0.249 Sum_probs=39.9
Q ss_pred CccEEEecCCCcccC--CCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551 13 KENFLVLAGVGLTEA--PSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS 88 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~ 88 (366)
..+.+++.++.+..+ ..++++++|++|++++|.++.++.. ..+++|++|++++|.+..++...+..+++|++|+++
T Consensus 82 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 161 (606)
T 3t6q_A 82 RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161 (606)
T ss_dssp TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC
T ss_pred ccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcc
Confidence 445555555555554 2355566666666666655554222 455555555555555544321113335555555555
Q ss_pred CC
Q 038551 89 YN 90 (366)
Q Consensus 89 ~~ 90 (366)
+|
T Consensus 162 ~n 163 (606)
T 3t6q_A 162 NN 163 (606)
T ss_dssp SS
T ss_pred cC
Confidence 55
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=9.3e-23 Score=199.05 Aligned_cols=151 Identities=23% Similarity=0.255 Sum_probs=123.3
Q ss_pred CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCC
Q 038551 13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN 90 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~ 90 (366)
....+.|.+.++..+|.-. .+.++.|++++|.++.++.. ..+++|++|++++|.+..+++..|..+++|++|++++|
T Consensus 8 ~~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 8 PNITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TTTEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCcEEEeCCCCccccCCCc-cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 3456788888888887522 36799999999999987654 78999999999999998888777889999999999999
Q ss_pred CCCCCcc-hhhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccC-ccChhhhcCCcCCcEEEeecCCccc
Q 038551 91 RSLENLP-LGIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLS-RIPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 91 ~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
.++.++ ..++++++|++|++++|.++.++. .++.+++|++|++++|.... .+|.. +.++++|++|++.+|.+..
T Consensus 87 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 87 -PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp -CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred -cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce
Confidence 555554 678899999999999999988776 48899999999999854433 35665 8889999999999998875
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=9.7e-23 Score=189.78 Aligned_cols=278 Identities=16% Similarity=0.198 Sum_probs=203.8
Q ss_pred CCccEEEecCCCcccCCC--CCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEc
Q 038551 12 EKENFLVLAGVGLTEAPS--IGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLIL 87 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l 87 (366)
...+.+.+.++.+..+|. +.++++|+.|++++|.++.++.. ..+++|++|++++|.+..+++..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 455667777888888865 67899999999999999997653 88999999999999999988877899999999999
Q ss_pred cCCCCCCCcchh-hcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551 88 SYNRSLENLPLG-IFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN 165 (366)
Q Consensus 88 ~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 165 (366)
++| .++.+|.. +.++++|++|++++|.++.++. .+..+++|++|++++| .+..++ +..+++|+++++.+|.+.
T Consensus 125 ~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 125 ERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred CCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeeccccccc
Confidence 999 77788765 5889999999999999987755 4899999999999994 555554 445666777766666554
Q ss_pred cccccccc---ccC--CchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccC
Q 038551 166 VELEADSI---LFG--DSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASL 240 (366)
Q Consensus 166 ~~~~~~~~---~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~ 240 (366)
........ ... .....+. ...++|+.|++++|.+...+.+..+++ ++.|+++++. +.......+..+
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~~l~~l~~-----L~~L~Ls~n~-l~~~~~~~~~~l 271 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPG-----LVEVDLSYNE-LEKIMYHPFVKM 271 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCCGGGGGCTT-----CSEEECCSSC-CCEEESGGGTTC
T ss_pred ccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCcccHHHcCCCC-----ccEEECCCCc-CCCcChhHcccc
Confidence 31100000 000 0000111 224689999999998887765544444 4446665542 222222447889
Q ss_pred CcCcEEEeccCccceEeccccccccccccCCCCCcceeeee-------------cccceeEEeeccCcc----ccccccc
Q 038551 241 RHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK-------------ILKIEARDMACTCSQ----YQACPRG 303 (366)
Q Consensus 241 ~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~-------------l~~l~~L~l~~~c~~----l~~~~~~ 303 (366)
++|++|++++|.++.++... ..+++|+.|+++ ++.++.|+++ ++.- +..+++
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~~~- 340 (390)
T 3o6n_A 272 QRLERLYISNNRLVALNLYG---------QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD-HNSIVTLKLSTHHT- 340 (390)
T ss_dssp SSCCEEECCSSCCCEEECSS---------SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECC-SSCCCCCCCCTTCC-
T ss_pred ccCCEEECCCCcCcccCccc---------CCCCCCCEEECCCCcceecCccccccCcCCEEECC-CCccceeCchhhcc-
Confidence 99999999999998877543 457889999888 4566888888 7741 233788
Q ss_pred cceEEeecCc
Q 038551 304 LTKFEEHPLK 313 (366)
Q Consensus 304 L~~L~l~~~~ 313 (366)
|++|++++|+
T Consensus 341 L~~L~l~~N~ 350 (390)
T 3o6n_A 341 LKNLTLSHND 350 (390)
T ss_dssp CSEEECCSSC
T ss_pred CCEEEcCCCC
Confidence 9999999999
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=5.2e-23 Score=200.02 Aligned_cols=154 Identities=20% Similarity=0.174 Sum_probs=119.4
Q ss_pred CCccEEEecCCCcccC--CCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEc
Q 038551 12 EKENFLVLAGVGLTEA--PSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLIL 87 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l 87 (366)
...+.+++.++.+.++ ..+.++++|++|++++|.+..+++. ..+++|++|++++|.+..+++..++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 3678889999999887 3689999999999999999997643 88999999999999999888887899999999999
Q ss_pred cCCCCCC--CcchhhcCCCCCcEEEccccc-cccccc-cccCCCCCCEEEcccccccCccChh-----------------
Q 038551 88 SYNRSLE--NLPLGIFNLVSLQHLDISWTG-ITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQ----------------- 146 (366)
Q Consensus 88 ~~~~~~~--~l~~~~~~l~~L~~L~l~~~~-~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~----------------- 146 (366)
++| .++ ..|..++++++|++|++++|. +..+|. .+..+++|++|++++|...+..|..
T Consensus 106 s~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 106 MGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp TTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 999 555 346678889999999999886 566663 5777888888888775443333322
Q ss_pred ------hhcCCcCCcEEEeecCCccc
Q 038551 147 ------VISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 147 ------~~~~~~~L~~L~l~~~~~~~ 166 (366)
.+..+++|++|++.+|.+.+
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cccchhhHhhcccccEEEccCCcccc
Confidence 11235667777777666554
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=2.1e-22 Score=205.18 Aligned_cols=151 Identities=21% Similarity=0.238 Sum_probs=126.2
Q ss_pred ccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCC-CCccccchhhcCCCCCCEEEccCC
Q 038551 14 ENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSN-HLGTVSNNFFHSMASLRVLILSYN 90 (366)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~-~~~~i~~~~~~~l~~L~~L~l~~~ 90 (366)
...+++.++++..+|. -.++++.|++++|.++.+.+. ..+++|++|++++| .+..+++..|..+++|++|++++|
T Consensus 6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 3678899999999987 568999999999999986543 89999999999999 456786666999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEcccccccc-cccc--ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551 91 RSLENLPLGIFNLVSLQHLDISWTGITT-LPIE--LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 91 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~-l~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
...+..|..++++++|++|++++|.++. +|.. +..+++|++|++++|...+..+...+.++++|++|++.+|.+..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 5444558889999999999999999874 5554 89999999999999655444343348899999999999998875
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1e-22 Score=193.38 Aligned_cols=284 Identities=17% Similarity=0.181 Sum_probs=186.6
Q ss_pred CCccEEEecCCCcccC--CCCCCCCcccEEEcccCCccc-cCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEE
Q 038551 12 EKENFLVLAGVGLTEA--PSIGMWKETTRMSLMQNAIQN-LTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLI 86 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~ 86 (366)
...+.+++.++.+.++ ..++++++|+.|++++|.+.. ++.. ..+++|++|++++|.+..+++..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 4578899999999887 468999999999999998874 5433 8899999999999999888666699999999999
Q ss_pred ccCCCCCCCcchh--hcCCCCCcEEEccccccccc-ccc-ccCCCCCCEEEcccccccCccChhhhc-------------
Q 038551 87 LSYNRSLENLPLG--IFNLVSLQHLDISWTGITTL-PIE-LKYLVNLKCLNLEYTFRLSRIPQQVIS------------- 149 (366)
Q Consensus 87 l~~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~l-~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~------------- 149 (366)
+++|...+..+.. +.++++|++|++++|.++.+ |.. +..+++|++|++++|......+.. +.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLS 188 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccccc
Confidence 9999443344544 88999999999999999876 444 789999999999996544333322 32
Q ss_pred ---------------------CCcCCcEEEeecCCccccccccccccCCchhhhhhhh----------------------
Q 038551 150 ---------------------DLKMLRALRMFECGFNVELEADSILFGDSEVLVEELL---------------------- 186 (366)
Q Consensus 150 ---------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~---------------------- 186 (366)
.+++|++|++.+|.+.+. .+..+.
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES-------------MAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH-------------HHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCccccc-------------chhhhhccccccceeeEeeccccccccc
Confidence 235688888888876541 111110
Q ss_pred -----------------cCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEec
Q 038551 187 -----------------VLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLY 249 (366)
Q Consensus 187 -----------------~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 249 (366)
..++|+.|++++|.+.....- .+..+++ ++.|+++++. +.......+..+++|++|+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~--L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS-VFSHFTD--LEQLTLAQNE-INKIDDNAFWGLTHLLKLNLS 331 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT-TTTTCTT--CCEEECTTSC-CCEECTTTTTTCTTCCEEECC
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchh-hcccCCC--CCEEECCCCc-ccccChhHhcCcccCCEEECC
Confidence 124566666666555432110 1222333 3334443322 111111235566666666666
Q ss_pred cCccceEeccccccccccccCCCCCcceeeee--------------cccceeEEeeccCc-------cccccccccceEE
Q 038551 250 FNDLEELKIDAGELKRIREICGFHSLQKVFYK--------------ILKIEARDMACTCS-------QYQACPRGLTKFE 308 (366)
Q Consensus 250 ~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~--------------l~~l~~L~l~~~c~-------~l~~~~~~L~~L~ 308 (366)
+|.++.++...+ ..+++|+.|+++ +++++.|+++ ++. .+..+++ |++|+
T Consensus 332 ~N~l~~~~~~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~-L~~L~ 401 (455)
T 3v47_A 332 QNFLGSIDSRMF--------ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD-TNQLKSVPDGIFDRLTS-LQKIW 401 (455)
T ss_dssp SSCCCEECGGGG--------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCSCCCTTTTTTCTT-CCEEE
T ss_pred CCccCCcChhHh--------cCcccCCEEECCCCcccccChhhccccccccEEECC-CCccccCCHhHhccCCc-ccEEE
Confidence 666665543332 345566666665 3344566666 542 1233678 99999
Q ss_pred eecCc-ccCCcccccc
Q 038551 309 EHPLK-RLECAELKEL 323 (366)
Q Consensus 309 l~~~~-~~~~~~L~~L 323 (366)
+++|+ ...||.+..+
T Consensus 402 l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 402 LHTNPWDCSCPRIDYL 417 (455)
T ss_dssp CCSSCBCCCTTTTHHH
T ss_pred ccCCCcccCCCcchHH
Confidence 99999 5667765543
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.7e-22 Score=197.07 Aligned_cols=145 Identities=26% Similarity=0.331 Sum_probs=120.2
Q ss_pred CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccC
Q 038551 12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSY 89 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~ 89 (366)
+..+.+++.++++..+|.-. .++++.|++++|.++.+++. ..+++|++|++++|.+..++++.|..+++|++|++++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp --CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 34488999999999997532 38999999999999998753 8999999999999999998777799999999999999
Q ss_pred CCCCCCcchhhcCCCCCcEEEcccccccccc--ccccCCCCCCEEEcccccccCccChhhhcCCcCC--cEEEeecCCc
Q 038551 90 NRSLENLPLGIFNLVSLQHLDISWTGITTLP--IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKML--RALRMFECGF 164 (366)
Q Consensus 90 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~ 164 (366)
| .++.+|.. .+++|++|++++|.++.++ ..++.+++|++|++++| .+.... +..+++| ++|++.+|.+
T Consensus 110 N-~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 110 N-RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp S-CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred C-cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence 9 67888876 8999999999999998765 67999999999999995 444322 4444455 8888887766
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2.3e-22 Score=190.79 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=94.1
Q ss_pred CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551 12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 91 (366)
...+.+++.++.+.+++ ++.+++|+.|++++|.++.++ ...+++|++|++++|.+..++ +..+++|++|++++|
T Consensus 64 ~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N- 137 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARN- 137 (457)
T ss_dssp TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTS-
T ss_pred CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCC-
Confidence 45667777788877776 777888888888888887764 467778888888888777764 667778888888877
Q ss_pred CCCCcchhhcCCCCCcEEEcccc-ccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551 92 SLENLPLGIFNLVSLQHLDISWT-GITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 92 ~~~~l~~~~~~l~~L~~L~l~~~-~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
.++.++ ++.+++|++|++++| .+..+ .+..+++|++|++++ +.++.++ +..+++|+.|++.+|.+.+
T Consensus 138 ~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~-n~l~~l~---l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 138 TLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF-NKITELD---VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp CCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS-SCCCCCC---CTTCTTCCEEECCSSCCSC
T ss_pred ccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC-Cccceec---cccCCCCCEEECcCCcCCe
Confidence 455453 556666666666666 34444 245566666666666 3444443 4455566666666665553
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=4.8e-23 Score=201.11 Aligned_cols=152 Identities=23% Similarity=0.240 Sum_probs=125.4
Q ss_pred CCccEEEecCCCcccCC--CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEc
Q 038551 12 EKENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLIL 87 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l 87 (366)
...+.+++.++.+..++ .+.++++|++|++++|.++.++.. ..+++|++|++++|.+..+++..|..+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 35678899999998884 689999999999999999997654 78999999999999999888777999999999999
Q ss_pred cCCCCCCCcch-hhcCCCCCcEEEcccccccc--ccccccCCCCCCEEEcccccccCccChhhhcCCcCC----cEEEee
Q 038551 88 SYNRSLENLPL-GIFNLVSLQHLDISWTGITT--LPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKML----RALRMF 160 (366)
Q Consensus 88 ~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~L~l~ 160 (366)
++| .++.++. .++++++|++|++++|.++. +|..+.++++|++|++++| .+..++...+..+++| +.+++.
T Consensus 108 ~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 108 VET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp TTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccC
Confidence 999 6666664 58899999999999999885 6888999999999999995 5555543335555555 667776
Q ss_pred cCCcc
Q 038551 161 ECGFN 165 (366)
Q Consensus 161 ~~~~~ 165 (366)
+|.+.
T Consensus 186 ~n~l~ 190 (570)
T 2z63_A 186 LNPMN 190 (570)
T ss_dssp TCCCC
T ss_pred CCCce
Confidence 66554
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.3e-23 Score=212.31 Aligned_cols=291 Identities=13% Similarity=0.127 Sum_probs=182.3
Q ss_pred CCcccCC-CCCCCCcccEEEcccCCccc------------------cCCC-C--CCCCccEEEccCCCC-ccccchhhcC
Q 038551 22 VGLTEAP-SIGMWKETTRMSLMQNAIQN------------------LTEI-P--TCPRLRTLFLPSNHL-GTVSNNFFHS 78 (366)
Q Consensus 22 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~~-~~i~~~~~~~ 78 (366)
+++..+| .++++++|+.|++++|.++. +|.. . .+++|++|++++|.+ +.+|.. +..
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGG
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhC
Confidence 3444464 47778888888888888887 6666 5 788888888888865 456654 778
Q ss_pred CCCCCEEEccCCCCCC--CcchhhcCCC-------CCcEEEccccccccccc--cccCCCCCCEEEcccccccCccChhh
Q 038551 79 MASLRVLILSYNRSLE--NLPLGIFNLV-------SLQHLDISWTGITTLPI--ELKYLVNLKCLNLEYTFRLSRIPQQV 147 (366)
Q Consensus 79 l~~L~~L~l~~~~~~~--~l~~~~~~l~-------~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~ 147 (366)
+++|++|++++|+.++ .+|..+++++ +|++|++++|.++.+|. .+..+++|++|++++| .+..+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~- 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A- 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-
Confidence 8888888888884244 4776665554 88888888888888887 6788888888888874 444777 3
Q ss_pred hcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcc-cceeeeccccchhhHhHhhhcc--------------
Q 038551 148 ISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKH-LNLLTITLQSFGALQRLLSYCR-------------- 212 (366)
Q Consensus 148 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~~~-------------- 212 (366)
+.++++|+.|++.+|.+. ..+..+..+++ |+.|++++|.+..++.......
T Consensus 591 ~~~L~~L~~L~Ls~N~l~--------------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE--------------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp CCTTSEESEEECCSSCCS--------------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred hcCCCcceEEECcCCccc--------------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcC
Confidence 777788888888887766 23334555555 6666665555544332111111
Q ss_pred -------------cCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceee
Q 038551 213 -------------LGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVF 279 (366)
Q Consensus 213 -------------l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~ 279 (366)
+....+..|+++.+.- ...+...+..+++|+.|++++|.++.++......... ....+++|+.|+
T Consensus 657 ~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~-~l~nl~~L~~L~ 734 (876)
T 4ecn_A 657 GSEGRNISCSMDDYKGINASTVTLSYNEI-QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG-NYKNTYLLTTID 734 (876)
T ss_dssp TTTSSSCSSCTTTCCCCCEEEEECCSSCC-CSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS-CCTTGGGCCEEE
T ss_pred CCccccchhhhccccCCCcCEEEccCCcC-CccCHHHHccCCCCCEEECCCCcCCccChHHhccccc-cccccCCccEEE
Confidence 1101244454544322 2222223446788888888888777666543321000 001234777887
Q ss_pred ee---------------cccceeEEeeccCc------cccccccccceEEeec------Cc--------ccCCccccccc
Q 038551 280 YK---------------ILKIEARDMACTCS------QYQACPRGLTKFEEHP------LK--------RLECAELKELP 324 (366)
Q Consensus 280 l~---------------l~~l~~L~l~~~c~------~l~~~~~~L~~L~l~~------~~--------~~~~~~L~~L~ 324 (366)
++ +++++.|+++ ++. .+..+++ |+.|+|++ |. +..+++|+.|+
T Consensus 735 Ls~N~L~~lp~~l~~~~l~~L~~L~Ls-~N~L~~lp~~l~~L~~-L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~ 812 (876)
T 4ecn_A 735 LRFNKLTSLSDDFRATTLPYLSNMDVS-YNCFSSFPTQPLNSSQ-LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812 (876)
T ss_dssp CCSSCCCCCCGGGSTTTCTTCCEEECC-SSCCSSCCCGGGGCTT-CCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred CCCCCCccchHHhhhccCCCcCEEEeC-CCCCCccchhhhcCCC-CCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence 76 2345677777 552 1223567 88888866 33 56788888888
Q ss_pred CCCCCCCCceE
Q 038551 325 LDCNHGLEQKI 335 (366)
Q Consensus 325 l~~n~~~~~~~ 335 (366)
+++|.+ +.++
T Consensus 813 Ls~N~L-~~Ip 822 (876)
T 4ecn_A 813 IGSNDI-RKVD 822 (876)
T ss_dssp CCSSCC-CBCC
T ss_pred CCCCCC-CccC
Confidence 888887 4443
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=3.4e-22 Score=181.84 Aligned_cols=200 Identities=18% Similarity=0.247 Sum_probs=91.7
Q ss_pred cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEccc
Q 038551 35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHLDISW 113 (366)
Q Consensus 35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~ 113 (366)
+++.++++++.++.+|.. ..+.+++|++++|.++.+++..+..+++|++|++++| .++.+ |..+.++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCC
Confidence 455555555555544432 1234555555555555554443555555555555555 22322 44455555555555555
Q ss_pred cccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551 114 TGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL 193 (366)
Q Consensus 114 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 193 (366)
|.++.+|..+. ++|++|++++ +.+..++...+.++++|++|++.+|.+.. .......+..+++|+.
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS-----------SGIENGAFQGMKKLSY 175 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG-----------GGBCTTGGGGCTTCCE
T ss_pred CcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCc-----------cCcChhhccCCCCcCE
Confidence 55555544332 4555555555 23344443334555555555555555432 0122334444555555
Q ss_pred eeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEe
Q 038551 194 LTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELK 257 (366)
Q Consensus 194 L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~ 257 (366)
|++++|.+..++.... . .++.|++.++. +.......+..+++|++|++++|.++.++
T Consensus 176 L~l~~n~l~~l~~~~~----~--~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 176 IRIADTNITTIPQGLP----P--SLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp EECCSSCCCSCCSSCC----T--TCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred EECCCCccccCCcccc----c--cCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeC
Confidence 5555555444332110 1 23334333321 11111122445555555555555555444
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.3e-22 Score=194.28 Aligned_cols=143 Identities=24% Similarity=0.278 Sum_probs=109.5
Q ss_pred ccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551 14 ENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91 (366)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 91 (366)
.+.+++.++++..+|.-.. ++|+.|++++|.++.+++. ..+++|++|++++|.+..+++..|..+++|++|++++|
T Consensus 2 ~~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N- 79 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN- 79 (520)
T ss_dssp CCEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-
T ss_pred cceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-
Confidence 3577888888888875332 8899999999988887643 78888999999999888876666888899999999998
Q ss_pred CCCCcchhhcCCCCCcEEEcccccccc--ccccccCCCCCCEEEcccccccCccChhhhcCCcCC--cEEEeecCCc
Q 038551 92 SLENLPLGIFNLVSLQHLDISWTGITT--LPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKML--RALRMFECGF 164 (366)
Q Consensus 92 ~~~~l~~~~~~l~~L~~L~l~~~~~~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~ 164 (366)
.++.+|.. .+++|++|++++|.++. +|..++.+++|++|++++|. +... .+..+++| ++|++.+|.+
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecccc
Confidence 66777765 78889999999988875 56778888888888888853 3331 14555556 7777776665
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=3e-22 Score=182.37 Aligned_cols=146 Identities=23% Similarity=0.300 Sum_probs=71.0
Q ss_pred cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551 15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS 92 (366)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 92 (366)
+.+.+.++++..+|... .++++.|++++|.+..++.. ..+++|++|++++|.+..+++..+..+++|++|++++| .
T Consensus 36 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 113 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-H 113 (332)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-C
T ss_pred CEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-c
Confidence 34455555555554211 24555555555555554332 45555555555555555544333555555555555555 4
Q ss_pred CCCcchhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccC-ccChhhhcCCcCCcEEEeecCCcc
Q 038551 93 LENLPLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLS-RIPQQVISDLKMLRALRMFECGFN 165 (366)
Q Consensus 93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~ 165 (366)
++.+|..+. ++|++|++++|.++.++.. +..+++|++|++++|.... ......+..+ +|++|++.+|.+.
T Consensus 114 l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 114 LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 444444332 4555555555555554432 4555555555555532211 1111113333 5555555555544
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.7e-22 Score=202.57 Aligned_cols=302 Identities=17% Similarity=0.229 Sum_probs=210.7
Q ss_pred CCccEEEecCCCccc------------------CC-CCC--CCCcccEEEcccCCccc-cCCC-CCCCCccEEEccCCC-
Q 038551 12 EKENFLVLAGVGLTE------------------AP-SIG--MWKETTRMSLMQNAIQN-LTEI-PTCPRLRTLFLPSNH- 67 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~------------------~~-~~~--~~~~L~~L~l~~~~~~~-l~~~-~~~~~L~~L~l~~~~- 67 (366)
...+.+++.++.+.. +| .++ ++++|+.|++++|.+.. +|.. ..+++|+.|++++|.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 467788888888888 74 455 89999999999998766 6655 888999999999997
Q ss_pred Ccc--ccchhhcC-------CCCCCEEEccCCCCCCCcch--hhcCCCCCcEEEccccccccccccccCCCCCCEEEccc
Q 038551 68 LGT--VSNNFFHS-------MASLRVLILSYNRSLENLPL--GIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEY 136 (366)
Q Consensus 68 ~~~--i~~~~~~~-------l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~ 136 (366)
++. +|.. +.. +++|++|++++| .++.+|. .++++++|++|++++|.++.+| .++.+++|+.|++++
T Consensus 528 lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 528 ISAAQLKAD-WTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp SCHHHHHHH-HHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCS
T ss_pred cccccchHH-HHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcC
Confidence 764 6665 444 448999999999 5668888 8889999999999999888888 788889999999998
Q ss_pred ccccCccChhhhcCCcC-CcEEEeecCCccccccc-ccc-------------ccCC-chhhhhhhh--cCcccceeeecc
Q 038551 137 TFRLSRIPQQVISDLKM-LRALRMFECGFNVELEA-DSI-------------LFGD-SEVLVEELL--VLKHLNLLTITL 198 (366)
Q Consensus 137 ~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~-~~~-------------~~~~-~~~~~~~l~--~l~~L~~L~l~~ 198 (366)
| .+..+|.. +.++++ |+.|++.+|.+...... ... ...+ .+..+..+. .+++|+.|++++
T Consensus 605 N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~ 682 (876)
T 4ecn_A 605 N-QIEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682 (876)
T ss_dssp S-CCSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred C-ccccchHH-HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence 5 45578876 777887 89999988887632110 000 0000 001111122 234788999999
Q ss_pred ccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhh-------ccCCcCcEEEeccCccceEeccccccccccccCC
Q 038551 199 QSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAF-------ASLRHLRTLQLYFNDLEELKIDAGELKRIREICG 271 (366)
Q Consensus 199 ~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l-------~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~ 271 (366)
|.+..++... ...+++ ++.|+++.+.- ...+...+ .++++|++|++++|.++.++..... ..
T Consensus 683 N~L~~lp~~~-~~~l~~--L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~-------~~ 751 (876)
T 4ecn_A 683 NEIQKFPTEL-FATGSP--ISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA-------TT 751 (876)
T ss_dssp SCCCSCCHHH-HHTTCC--CSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST-------TT
T ss_pred CcCCccCHHH-HccCCC--CCEEECCCCcC-CccChHHhccccccccccCCccEEECCCCCCccchHHhhh-------cc
Confidence 8888765432 223333 44455554321 22221112 2345999999999998877654321 26
Q ss_pred CCCcceeeee-------------cccceeEEeeccCc-------------cccccccccceEEeecCccc-----CCccc
Q 038551 272 FHSLQKVFYK-------------ILKIEARDMACTCS-------------QYQACPRGLTKFEEHPLKRL-----ECAEL 320 (366)
Q Consensus 272 ~~~L~~L~l~-------------l~~l~~L~l~~~c~-------------~l~~~~~~L~~L~l~~~~~~-----~~~~L 320 (366)
+++|+.|+++ +++++.|+++ ++. .+..+++ |+.|+|++|.+. -+++|
T Consensus 752 l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls-~N~~ls~N~l~~~ip~~l~~L~~-L~~L~Ls~N~L~~Ip~~l~~~L 829 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIR-HQRDAEGNRILRQWPTGITTCPS-LIQLQIGSNDIRKVDEKLTPQL 829 (876)
T ss_dssp CTTCCEEECCSSCCSSCCCGGGGCTTCCEEECC-CCBCTTCCBCCCCCCTTGGGCSS-CCEEECCSSCCCBCCSCCCSSS
T ss_pred CCCcCEEEeCCCCCCccchhhhcCCCCCEEECC-CCCCcccccccccChHHHhcCCC-CCEEECCCCCCCccCHhhcCCC
Confidence 8899999998 4566888887 632 2233788 999999999922 34689
Q ss_pred ccccCCCCCCC
Q 038551 321 KELPLDCNHGL 331 (366)
Q Consensus 321 ~~L~l~~n~~~ 331 (366)
+.|++++|++.
T Consensus 830 ~~LdLs~N~l~ 840 (876)
T 4ecn_A 830 YILDIADNPNI 840 (876)
T ss_dssp CEEECCSCTTC
T ss_pred CEEECCCCCCC
Confidence 99999999974
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=5.4e-22 Score=194.80 Aligned_cols=276 Identities=16% Similarity=0.197 Sum_probs=200.7
Q ss_pred ccEEEecCCCcccCCC--CCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccC
Q 038551 14 ENFLVLAGVGLTEAPS--IGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSY 89 (366)
Q Consensus 14 ~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~ 89 (366)
.+.+.+.++.+..+|. +.++++|+.|++++|.+..+++. ..+++|++|++++|.+..+++..|+.+++|++|++++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence 4566667777777764 67789999999999999997653 8999999999999999999888789999999999999
Q ss_pred CCCCCCcchh-hcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccc
Q 038551 90 NRSLENLPLG-IFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVE 167 (366)
Q Consensus 90 ~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 167 (366)
| .++.+|.. ++++++|++|++++|.++.++. .+..+++|++|++++| .+..++ +..+++|+.|++.+|.+...
T Consensus 133 n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 133 N-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred C-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccCccccc
Confidence 9 67777765 5899999999999999987665 5899999999999994 555554 34566777777777665531
Q ss_pred cccccc---ccC--CchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCc
Q 038551 168 LEADSI---LFG--DSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRH 242 (366)
Q Consensus 168 ~~~~~~---~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~ 242 (366)
...... ... ....... ...++|+.|++++|.+.+.+.+..+++ +..|+++++. +.......+..+++
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~~~~l~~l~~-----L~~L~Ls~N~-l~~~~~~~~~~l~~ 279 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPG-----LVEVDLSYNE-LEKIMYHPFVKMQR 279 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSCCCCCGGGGGCTT-----CSEEECCSSC-CCEEESGGGTTCSS
T ss_pred cCCchhheeeccCCccccccc--ccCCCCCEEECCCCCCCCChhhccCCC-----CCEEECCCCc-cCCCCHHHhcCccC
Confidence 100000 000 0000011 113579999999998887655544444 3335555432 22222234788999
Q ss_pred CcEEEeccCccceEeccccccccccccCCCCCcceeeee-------------cccceeEEeeccCcc----ccccccccc
Q 038551 243 LRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK-------------ILKIEARDMACTCSQ----YQACPRGLT 305 (366)
Q Consensus 243 L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~-------------l~~l~~L~l~~~c~~----l~~~~~~L~ 305 (366)
|+.|++++|.++.++... ..+++|+.|+++ ++.++.|+++ +|.- +..+|. |+
T Consensus 280 L~~L~Ls~N~l~~l~~~~---------~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~-L~ 348 (597)
T 3oja_B 280 LERLYISNNRLVALNLYG---------QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD-HNSIVTLKLSTHHT-LK 348 (597)
T ss_dssp CCEEECTTSCCCEEECSS---------SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECC-SSCCCCCCCCTTCC-CS
T ss_pred CCEEECCCCCCCCCCccc---------ccCCCCcEEECCCCCCCccCcccccCCCCCEEECC-CCCCCCcChhhcCC-CC
Confidence 999999999988876543 457889999887 4556888888 7742 233788 99
Q ss_pred eEEeecCc
Q 038551 306 KFEEHPLK 313 (366)
Q Consensus 306 ~L~l~~~~ 313 (366)
.|++++|+
T Consensus 349 ~L~l~~N~ 356 (597)
T 3oja_B 349 NLTLSHND 356 (597)
T ss_dssp EEECCSSC
T ss_pred EEEeeCCC
Confidence 99999999
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=6.9e-23 Score=185.05 Aligned_cols=174 Identities=16% Similarity=0.197 Sum_probs=87.5
Q ss_pred CccEEEecCCCccc---C-CCCCCCCcccEEEccc-CCccc-cCCC-CCCCCccEEEccCCCCc-cccchhhcCCCCCCE
Q 038551 13 KENFLVLAGVGLTE---A-PSIGMWKETTRMSLMQ-NAIQN-LTEI-PTCPRLRTLFLPSNHLG-TVSNNFFHSMASLRV 84 (366)
Q Consensus 13 ~~~~~~~~~~~~~~---~-~~~~~~~~L~~L~l~~-~~~~~-l~~~-~~~~~L~~L~l~~~~~~-~i~~~~~~~l~~L~~ 84 (366)
..+.+++.++++.+ + +.+.++++|+.|++++ |.+.. +|.. ..+++|++|++++|.+. .+|.. +..+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCE
Confidence 34445555555543 2 3455555555555553 44443 3332 45555555555555554 33333 555555555
Q ss_pred EEccCCCCCCCcchhhcCCCCCcEEEccccccc-cccccccCCC-CCCEEEcccccccCccChhhhcCCcCCcEEEeecC
Q 038551 85 LILSYNRSLENLPLGIFNLVSLQHLDISWTGIT-TLPIELKYLV-NLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC 162 (366)
Q Consensus 85 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (366)
|++++|...+.+|..+..+++|++|++++|.++ .+|..+..++ +|++|++++|...+.+|.. +..++ |++|++.+|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCC
Confidence 555555333345555555555555555555554 4555555554 5555555554333344443 44443 555555555
Q ss_pred CccccccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551 163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG 202 (366)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 202 (366)
.+.+ ..+..+..+++|+.|++++|.+.
T Consensus 208 ~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 208 MLEG-------------DASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp EEEE-------------CCGGGCCTTSCCSEEECCSSEEC
T ss_pred cccC-------------cCCHHHhcCCCCCEEECCCCcee
Confidence 5543 33444445555555555555444
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=8e-22 Score=186.53 Aligned_cols=245 Identities=24% Similarity=0.282 Sum_probs=194.9
Q ss_pred eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCE
Q 038551 7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRV 84 (366)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~ 84 (366)
|.|.. ....+++.+.++..+|.-. .++++.|++++|.++.++.. ..+++|++|++++|.+..+++..|..+++|++
T Consensus 39 C~C~~-~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 39 CSCSN-QFSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp SEECT-TSCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred CEeCC-CCCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence 44432 2356788999999997533 37899999999999997644 89999999999999999998887999999999
Q ss_pred EEccCCCCCCCcch-hhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecC
Q 038551 85 LILSYNRSLENLPL-GIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC 162 (366)
Q Consensus 85 L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (366)
|++++| .++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|+.+..++...+.++++|++|++.+|
T Consensus 117 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 117 LELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp EECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred EECCCC-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 999999 6677764 68899999999999999998876 58999999999999988999988877899999999999999
Q ss_pred CccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCc
Q 038551 163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRH 242 (366)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~ 242 (366)
.+.. ...+..+++|+.|++++|.+..+.. ..+..+.+ ++.|++.++. +.......+..+++
T Consensus 196 ~l~~---------------~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~--L~~L~L~~n~-l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 196 NLRE---------------IPNLTPLIKLDELDLSGNHLSAIRP-GSFQGLMH--LQKLWMIQSQ-IQVIERNAFDNLQS 256 (440)
T ss_dssp CCSS---------------CCCCTTCSSCCEEECTTSCCCEECT-TTTTTCTT--CCEEECTTCC-CCEECTTSSTTCTT
T ss_pred cCcc---------------ccccCCCcccCEEECCCCccCccCh-hhhccCcc--CCEEECCCCc-eeEEChhhhcCCCC
Confidence 9874 1247788999999999998876532 12344444 4445554432 22232234788899
Q ss_pred CcEEEeccCccceEeccccccccccccCCCCCcceeeee
Q 038551 243 LRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK 281 (366)
Q Consensus 243 L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 281 (366)
|++|++++|.++.++...+ ..+++|+.|+++
T Consensus 257 L~~L~L~~N~l~~~~~~~~--------~~l~~L~~L~L~ 287 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLF--------TPLHHLERIHLH 287 (440)
T ss_dssp CCEEECTTSCCCCCCTTTT--------SSCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhHh--------ccccCCCEEEcC
Confidence 9999999999988776544 557888888876
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=7.4e-22 Score=187.39 Aligned_cols=239 Identities=24% Similarity=0.238 Sum_probs=192.5
Q ss_pred ccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551 14 ENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91 (366)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 91 (366)
...+++.+.++..+|.-. .++++.|++++|.++.++.. ..+++|++|++++|.+..+++..|..+++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n- 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN- 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-
Confidence 356788999999997422 37999999999999997544 89999999999999999988777999999999999999
Q ss_pred CCCCcch-hhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccc
Q 038551 92 SLENLPL-GIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELE 169 (366)
Q Consensus 92 ~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 169 (366)
.++.+|. .+.++++|++|++++|.++.++. .+..+++|++|++++|+.++.++...+.++++|++|++.+|.+..
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--- 210 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--- 210 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---
Confidence 6666664 48889999999999999998876 489999999999999999999988778999999999999999875
Q ss_pred ccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEec
Q 038551 170 ADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLY 249 (366)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 249 (366)
...+..+++|+.|++++|.+..+.. ..+..+.+ ++.|++.++. +.......+..+++|++|+++
T Consensus 211 ------------~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~--L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 211 ------------MPNLTPLVGLEELEMSGNHFPEIRP-GSFHGLSS--LKKLWVMNSQ-VSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp ------------CCCCTTCTTCCEEECTTSCCSEECG-GGGTTCTT--CCEEECTTSC-CCEECTTTTTTCTTCCEEECC
T ss_pred ------------cccccccccccEEECcCCcCcccCc-ccccCccC--CCEEEeCCCc-CceECHHHhcCCCCCCEEECC
Confidence 1357788999999999998886532 12344444 4445555432 222222347889999999999
Q ss_pred cCccceEeccccccccccccCCCCCcceeeee
Q 038551 250 FNDLEELKIDAGELKRIREICGFHSLQKVFYK 281 (366)
Q Consensus 250 ~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 281 (366)
+|.++.++...+ ..+++|+.|+++
T Consensus 275 ~N~l~~~~~~~~--------~~l~~L~~L~L~ 298 (452)
T 3zyi_A 275 HNNLSSLPHDLF--------TPLRYLVELHLH 298 (452)
T ss_dssp SSCCSCCCTTSS--------TTCTTCCEEECC
T ss_pred CCcCCccChHHh--------ccccCCCEEEcc
Confidence 999988776543 557888888876
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=1.8e-21 Score=192.05 Aligned_cols=158 Identities=22% Similarity=0.210 Sum_probs=125.4
Q ss_pred eeeeccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCC
Q 038551 4 RIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMAS 81 (366)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~ 81 (366)
|-+|.+... ...+.|.+.++..||.-- -+.++.|++++|.++.+++. ..+++|++|++++|.|..+++++|..+++
T Consensus 24 ~~~c~~~~~-~~~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~ 101 (635)
T 4g8a_A 24 WEPCVEVVP-NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 101 (635)
T ss_dssp -CCSEEEET-TTEEECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCCccccCC-CCEEECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCC
Confidence 445554433 345688888899987422 15799999999999998754 88999999999999999998888999999
Q ss_pred CCEEEccCCCCCCCcc-hhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCc--cChhhhcCCcCCcEE
Q 038551 82 LRVLILSYNRSLENLP-LGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSR--IPQQVISDLKMLRAL 157 (366)
Q Consensus 82 L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L 157 (366)
|++|++++| .++.+| ..|.++++|++|++++|.++.+|.. ++.+++|++|++++| .+.. .|.. +..+++|++|
T Consensus 102 L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L 178 (635)
T 4g8a_A 102 LSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHL 178 (635)
T ss_dssp CCEEECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEE
T ss_pred CCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchh-hccchhhhhh
Confidence 999999999 677776 4578999999999999999988764 889999999999985 4443 3443 7788899999
Q ss_pred EeecCCccc
Q 038551 158 RMFECGFNV 166 (366)
Q Consensus 158 ~l~~~~~~~ 166 (366)
++.+|.+..
T Consensus 179 ~L~~N~l~~ 187 (635)
T 4g8a_A 179 DLSSNKIQS 187 (635)
T ss_dssp ECCSSCCCE
T ss_pred cccCccccc
Confidence 998887654
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=2.1e-21 Score=197.82 Aligned_cols=154 Identities=19% Similarity=0.171 Sum_probs=125.6
Q ss_pred CCccEEEecCCCcccC--CCCCCCCcccEEEcccCCc-cccC-CC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEE
Q 038551 12 EKENFLVLAGVGLTEA--PSIGMWKETTRMSLMQNAI-QNLT-EI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLI 86 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~-~~l~-~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~ 86 (366)
...+.+++.++.+..+ ..+.++++|+.|++++|.. ..++ .. ..+++|++|++++|.+..+.+..|..+++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 5677889999999887 4799999999999999954 4463 33 8999999999999999988776699999999999
Q ss_pred ccCCCCCCCcchh--hcCCCCCcEEEcccccccccc--ccccCCCCCCEEEcccccccCccChhhhcCC--cCCcEEEee
Q 038551 87 LSYNRSLENLPLG--IFNLVSLQHLDISWTGITTLP--IELKYLVNLKCLNLEYTFRLSRIPQQVISDL--KMLRALRMF 160 (366)
Q Consensus 87 l~~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~ 160 (366)
+++|...+.+|.. ++++++|++|++++|.++.++ ..++++++|++|++++|......+.. +..+ ++|+.|++.
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLA 182 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEEC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECC
Confidence 9999544445654 889999999999999998653 46899999999999996544444443 5555 788888888
Q ss_pred cCCccc
Q 038551 161 ECGFNV 166 (366)
Q Consensus 161 ~~~~~~ 166 (366)
+|.+..
T Consensus 183 ~n~l~~ 188 (844)
T 3j0a_A 183 ANSLYS 188 (844)
T ss_dssp CSBSCC
T ss_pred CCcccc
Confidence 887765
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=3.7e-22 Score=181.42 Aligned_cols=216 Identities=22% Similarity=0.271 Sum_probs=129.4
Q ss_pred CcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcc
Q 038551 34 KETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDIS 112 (366)
Q Consensus 34 ~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 112 (366)
++++.|++++|.++.+|.. ..+++|++|++++|.+..+|.. +..+++|++|++++| .++.+|..++++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence 5666677777766666655 5566677777777666666655 566667777777776 445666666666777777776
Q ss_pred ccc-ccccccccc---------CCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhh
Q 038551 113 WTG-ITTLPIELK---------YLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLV 182 (366)
Q Consensus 113 ~~~-~~~l~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (366)
+|. ...+|..+. .+++|++|++++| .+..+|.. +.++++|++|++.+|.+.+ .+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~N~l~~--------------l~ 222 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-IANLQNLKSLKIRNSPLSA--------------LG 222 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG-GGGCTTCCEEEEESSCCCC--------------CC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh-hcCCCCCCEEEccCCCCCc--------------Cc
Confidence 653 335555443 3667777777663 44466655 6666677777777766653 23
Q ss_pred hhhhcCcccceeeeccccchh-hHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccC-ccceEeccc
Q 038551 183 EELLVLKHLNLLTITLQSFGA-LQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN-DLEELKIDA 260 (366)
Q Consensus 183 ~~l~~l~~L~~L~l~~~~~~~-~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~l~~~~ 260 (366)
..+..+++|+.|++++|...+ ++. .+..+.+ ++.|++.++......+ ..+..+++|++|++++| .++.+|...
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~~l~~--L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPP--IFGGRAP--LKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCC--CTTCCCC--CCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred hhhccCCCCCEEECcCCcchhhhHH--HhcCCCC--CCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 345666667777776655443 221 1223333 4445555543333222 22677788888888887 455555333
Q ss_pred cccccccccCCCCCcceeeee
Q 038551 261 GELKRIREICGFHSLQKVFYK 281 (366)
Q Consensus 261 ~~~~~~~~~~~~~~L~~L~l~ 281 (366)
..+++|+.+.+.
T Consensus 298 ---------~~L~~L~~l~l~ 309 (328)
T 4fcg_A 298 ---------AQLPANCIILVP 309 (328)
T ss_dssp ---------GGSCTTCEEECC
T ss_pred ---------hhccCceEEeCC
Confidence 456777777665
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=2.2e-21 Score=172.80 Aligned_cols=229 Identities=25% Similarity=0.289 Sum_probs=179.0
Q ss_pred eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCE
Q 038551 7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRV 84 (366)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~ 84 (366)
|.|..+....+++.+.++..+|. +-.++++.|++++|.++.++.. ..+++|++|++++|.+..+.+..+..+++|++
T Consensus 6 C~C~~~~~~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 84 (285)
T 1ozn_A 6 CVCYNEPKVTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84 (285)
T ss_dssp CEEECSSSCEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ceECCCCCeEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCE
Confidence 77777777889999999999974 3358999999999999998754 88999999999999999886666999999999
Q ss_pred EEccCCCCCCCc-chhhcCCCCCcEEEcccccccccc-ccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecC
Q 038551 85 LILSYNRSLENL-PLGIFNLVSLQHLDISWTGITTLP-IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC 162 (366)
Q Consensus 85 L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (366)
|++++|..++.+ |..+..+++|++|++++|.++.++ ..+..+++|++|++++ +.+..++...+.++++|++|++.+|
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCC
Confidence 999999546666 677899999999999999998774 5588999999999999 5666777665889999999999999
Q ss_pred CccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCc
Q 038551 163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRH 242 (366)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~ 242 (366)
.+.. .....+..+++|+.|++++|.+..+.. ..+..+++ ++.|++.++. +.......+..+++
T Consensus 164 ~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~--L~~L~l~~n~-l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 164 RISS-------------VPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGR--LMTLYLFANN-LSALPTEALAPLRA 226 (285)
T ss_dssp CCCE-------------ECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTT--CCEEECCSSC-CSCCCHHHHTTCTT
T ss_pred cccc-------------cCHHHhcCccccCEEECCCCcccccCH-hHccCccc--ccEeeCCCCc-CCcCCHHHcccCcc
Confidence 9875 334457788999999999998776421 11233333 3445554432 22333334667777
Q ss_pred CcEEEeccCccc
Q 038551 243 LRTLQLYFNDLE 254 (366)
Q Consensus 243 L~~L~l~~~~l~ 254 (366)
|++|++++|.+.
T Consensus 227 L~~L~l~~N~~~ 238 (285)
T 1ozn_A 227 LQYLRLNDNPWV 238 (285)
T ss_dssp CCEEECCSSCEE
T ss_pred cCEEeccCCCcc
Confidence 888888777655
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=2.5e-21 Score=176.29 Aligned_cols=259 Identities=18% Similarity=0.172 Sum_probs=187.0
Q ss_pred cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEccc
Q 038551 35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHLDISW 113 (366)
Q Consensus 35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~ 113 (366)
+++.++++++.++.+|.. -.+++++|++++|.+..+++..+..+++|++|++++| .++.+ |..+.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCC
Confidence 799999999999988865 2468999999999999887766999999999999999 55554 77899999999999999
Q ss_pred cccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551 114 TGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL 193 (366)
Q Consensus 114 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 193 (366)
|.++.+|..+. ++|++|++++ +.+..++...+.++++|++|++.+|.+.. ....+..+..+ +|+.
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLEN-----------SGFEPGAFDGL-KLNY 176 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBG-----------GGSCTTSSCSC-CCSC
T ss_pred CcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCcccc-----------CCCCcccccCC-ccCE
Confidence 99999987655 8999999999 56777777668999999999999999863 11334455555 8888
Q ss_pred eeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCC
Q 038551 194 LTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFH 273 (366)
Q Consensus 194 L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~ 273 (366)
|++++|.+..++... . . .++.|++++.. +.......+..+++|++|++++|.++.++.... ..++
T Consensus 177 L~l~~n~l~~l~~~~-~---~--~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--------~~l~ 241 (332)
T 2ft3_A 177 LRISEAKLTGIPKDL-P---E--TLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL--------SFLP 241 (332)
T ss_dssp CBCCSSBCSSCCSSS-C---S--SCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--------GGCT
T ss_pred EECcCCCCCccCccc-c---C--CCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCcCChhHh--------hCCC
Confidence 899888887765321 1 2 24445554432 222222336778888888888888877654332 4567
Q ss_pred CcceeeeecccceeEEeeccCccccccccccceEEeecCccc--------------CCcccccccCCCCCCC
Q 038551 274 SLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLKRL--------------ECAELKELPLDCNHGL 331 (366)
Q Consensus 274 ~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~~~--------------~~~~L~~L~l~~n~~~ 331 (366)
+|+.|+++-..+. .+. ..+..+++ |++|++++|++. ..+.|+.|++++|+..
T Consensus 242 ~L~~L~L~~N~l~--~lp---~~l~~l~~-L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 242 TLRELHLDNNKLS--RVP---AGLPDLKL-LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TCCEEECCSSCCC--BCC---TTGGGCTT-CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCEEECCCCcCe--ecC---hhhhcCcc-CCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 7777777522221 111 11333666 778887777711 1355677777777763
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.1e-20 Score=182.40 Aligned_cols=301 Identities=16% Similarity=0.099 Sum_probs=195.0
Q ss_pred CCccEEEecCCCcccCC--CCCCCCcccEEEcccCCccccC-CC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEc
Q 038551 12 EKENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQNLT-EI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLIL 87 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~-~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l 87 (366)
...+.+++.++.+..++ .+.++++|++|++++|.++.++ .. ..+++|++|++++|.+..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEec
Confidence 56778888888888874 5888999999999999998864 33 8889999999999988888764 7889999999
Q ss_pred cCCCCCC-CcchhhcCCCCCcEEEccccccccccccccCCCCC--CEEEcccccc--cCccChhhhcC------------
Q 038551 88 SYNRSLE-NLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNL--KCLNLEYTFR--LSRIPQQVISD------------ 150 (366)
Q Consensus 88 ~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L--~~L~l~~~~~--~~~~~~~~~~~------------ 150 (366)
++|...+ .+|..++++++|++|++++|.++. ..+..+++| ++|++++|.. ....|.. +..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-ccccccceEEEEecc
Confidence 9994333 367788889999999998887764 224445555 6666665433 1221111 111
Q ss_pred -----------------------------------------------------------------------CcCCcEEEe
Q 038551 151 -----------------------------------------------------------------------LKMLRALRM 159 (366)
Q Consensus 151 -----------------------------------------------------------------------~~~L~~L~l 159 (366)
.++|++|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 114555555
Q ss_pred ecCCcccccccc-------cccc--------C--Cch-hhhhh----------------------hhcCcccceeeeccc
Q 038551 160 FECGFNVELEAD-------SILF--------G--DSE-VLVEE----------------------LLVLKHLNLLTITLQ 199 (366)
Q Consensus 160 ~~~~~~~~~~~~-------~~~~--------~--~~~-~~~~~----------------------l~~l~~L~~L~l~~~ 199 (366)
.+|.+.+..... .... . ... ..+.. ...+++|+.|++++|
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred ecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECC
Confidence 555444211000 0000 0 000 01111 156788999999988
Q ss_pred cchh-hHhHhhhcccCcccceeeeccccCCCCCc-ch-hhhccCCcCcEEEeccCccce-EeccccccccccccCCCCCc
Q 038551 200 SFGA-LQRLLSYCRLGSISTQCLCLRHLNNSNSL-SV-FAFASLRHLRTLQLYFNDLEE-LKIDAGELKRIREICGFHSL 275 (366)
Q Consensus 200 ~~~~-~~~l~~~~~l~~l~l~~L~~~~~~~~~~~-~~-~~l~~~~~L~~L~l~~~~l~~-l~~~~~~~~~~~~~~~~~~L 275 (366)
.+.+ .+. .+..+++ ++.|+++++.- ... .+ ..+..+++|++|++++|.+.. ++.... ..+++|
T Consensus 335 ~l~~~~~~--~~~~l~~--L~~L~L~~N~l-~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~--------~~l~~L 401 (520)
T 2z7x_B 335 LLTDTVFE--NCGHLTE--LETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC--------SWTKSL 401 (520)
T ss_dssp CCCTTTTT--TCCCCSS--CCEEECCSSCC-CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC--------CCCTTC
T ss_pred ccChhhhh--hhccCCC--CCEEEccCCcc-CccccchHHHhhCCCCCEEECCCCcCCcccccchh--------ccCccC
Confidence 8776 221 2344444 44566655432 221 11 346788999999999998776 554322 456788
Q ss_pred ceeeee-----------c-ccceeEEeeccCc------cccccccccceEEeecCc--------ccCCcccccccCCCCC
Q 038551 276 QKVFYK-----------I-LKIEARDMACTCS------QYQACPRGLTKFEEHPLK--------RLECAELKELPLDCNH 329 (366)
Q Consensus 276 ~~L~l~-----------l-~~l~~L~l~~~c~------~l~~~~~~L~~L~l~~~~--------~~~~~~L~~L~l~~n~ 329 (366)
+.|+++ + ..++.|+++ +|. .+..+++ |++|++++|+ +..+++|+.|++++|+
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls-~N~l~~ip~~~~~l~~-L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLH-SNKIKSIPKQVVKLEA-LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECC-SSCCCCCCGGGGGCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECC-CCcccccchhhhcCCC-CCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence 888877 1 456778887 662 1223677 9999999998 4568889999999999
Q ss_pred CCCc
Q 038551 330 GLEQ 333 (366)
Q Consensus 330 ~~~~ 333 (366)
+.++
T Consensus 480 ~~c~ 483 (520)
T 2z7x_B 480 WDCS 483 (520)
T ss_dssp BCCC
T ss_pred Cccc
Confidence 8654
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=1.6e-20 Score=170.81 Aligned_cols=283 Identities=19% Similarity=0.176 Sum_probs=200.8
Q ss_pred CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCC
Q 038551 13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN 90 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~ 90 (366)
..+.+.+.++++..+|... .++++.|++++|.++.++.. ..+++|++|++++|.+..+.+..+..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 4567888888898887532 37999999999999998764 88999999999999999886666999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccC-ccChhhhcCCcCCcEEEeecCCccccc
Q 038551 91 RSLENLPLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLS-RIPQQVISDLKMLRALRMFECGFNVEL 168 (366)
Q Consensus 91 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~ 168 (366)
.++.+|..+. ++|++|++++|.++.++.. +..+++|++|++++|.... ......+.++++|++|++.+|.+..
T Consensus 111 -~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-- 185 (330)
T 1xku_A 111 -QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-- 185 (330)
T ss_dssp -CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--
T ss_pred -cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--
Confidence 6778886654 7999999999999977654 7899999999999954422 1333338889999999999999874
Q ss_pred cccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEe
Q 038551 169 EADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQL 248 (366)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l 248 (366)
.+..+ .++|+.|++++|.+..+.. ..+..+++ ++.|+++.+. +.......+..+++|++|++
T Consensus 186 ------------l~~~~--~~~L~~L~l~~n~l~~~~~-~~~~~l~~--L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 186 ------------IPQGL--PPSLTELHLDGNKITKVDA-ASLKGLNN--LAKLGLSFNS-ISAVDNGSLANTPHLRELHL 247 (330)
T ss_dssp ------------CCSSC--CTTCSEEECTTSCCCEECT-GGGTTCTT--CCEEECCSSC-CCEECTTTGGGSTTCCEEEC
T ss_pred ------------CCccc--cccCCEEECCCCcCCccCH-HHhcCCCC--CCEEECCCCc-CceeChhhccCCCCCCEEEC
Confidence 22222 2789999999998876521 12334444 4445555432 22222234788899999999
Q ss_pred ccCccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCcc--ccccccccceEEeecCc----------ccC
Q 038551 249 YFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQ--YQACPRGLTKFEEHPLK----------RLE 316 (366)
Q Consensus 249 ~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~--l~~~~~~L~~L~l~~~~----------~~~ 316 (366)
++|.++.++... ..+++|+.|+++-..+..+.....|.. ....+. ++.|++.+|+ ...
T Consensus 248 ~~N~l~~lp~~l---------~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~-l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 248 NNNKLVKVPGGL---------ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS-YSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp CSSCCSSCCTTT---------TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC-CSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCcCccCChhh---------ccCCCcCEEECCCCcCCccChhhcCCccccccccc-ccceEeecCcccccccCcccccc
Confidence 999888766432 557888888886222221111101110 111466 8999999998 456
Q ss_pred CcccccccCCCCC
Q 038551 317 CAELKELPLDCNH 329 (366)
Q Consensus 317 ~~~L~~L~l~~n~ 329 (366)
++.++.+++++|+
T Consensus 318 ~~~l~~l~L~~N~ 330 (330)
T 1xku_A 318 VYVRAAVQLGNYK 330 (330)
T ss_dssp CCCGGGEEC----
T ss_pred ccceeEEEecccC
Confidence 7788889988774
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=3.5e-21 Score=173.24 Aligned_cols=222 Identities=26% Similarity=0.333 Sum_probs=162.3
Q ss_pred cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccc---cchhhcCCCCCCEEEccC
Q 038551 15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTV---SNNFFHSMASLRVLILSY 89 (366)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i---~~~~~~~l~~L~~L~l~~ 89 (366)
..+.+.+.++..+|. .-.++++.|++++|.++.++.. ..+++|++|++++|.+..+ +.. +..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCC
Confidence 467888889999875 2247999999999999998765 7899999999999988755 344 66799999999999
Q ss_pred CCCCCCcchhhcCCCCCcEEEccccccccccc--cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccc
Q 038551 90 NRSLENLPLGIFNLVSLQHLDISWTGITTLPI--ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVE 167 (366)
Q Consensus 90 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 167 (366)
| .++.+|..+..+++|++|++++|.++.++. .+..+++|++|++++|. +...+...+..+++|++|++.+|.+.+
T Consensus 88 n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~- 164 (306)
T 2z66_A 88 N-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE- 164 (306)
T ss_dssp C-SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG-
T ss_pred C-ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc-
Confidence 9 677788888899999999999999987764 58899999999999964 444444448889999999999998863
Q ss_pred ccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEE
Q 038551 168 LEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQ 247 (366)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~ 247 (366)
...+..+..+++|+.|++++|.+..++. ..+..+++ ++.|+++++. ++......+..+++|++|+
T Consensus 165 -----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~--L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 165 -----------NFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSS--LQVLNMSHNN-FFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp -----------GEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTT--CCEEECTTSC-CSBCCSGGGTTCTTCCEEE
T ss_pred -----------ccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCC--CCEEECCCCc-cCccChhhccCcccCCEeE
Confidence 1345667788999999999887765421 01222333 3334444322 1111112255566666666
Q ss_pred eccCccceE
Q 038551 248 LYFNDLEEL 256 (366)
Q Consensus 248 l~~~~l~~l 256 (366)
+++|.+...
T Consensus 230 L~~N~l~~~ 238 (306)
T 2z66_A 230 YSLNHIMTS 238 (306)
T ss_dssp CTTSCCCBC
T ss_pred CCCCCCccc
Confidence 666665543
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=1.3e-20 Score=187.75 Aligned_cols=33 Identities=15% Similarity=-0.093 Sum_probs=23.4
Q ss_pred cccccceEEeecCc--------cc-CCcccccccCCCCCCCCc
Q 038551 300 CPRGLTKFEEHPLK--------RL-ECAELKELPLDCNHGLEQ 333 (366)
Q Consensus 300 ~~~~L~~L~l~~~~--------~~-~~~~L~~L~l~~n~~~~~ 333 (366)
+++ |+.|++++|. +. .+++|+.|++++|+...+
T Consensus 583 l~~-L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 583 QVS-LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CTT-CCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCC-CCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 466 8888888777 22 567788888888877544
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=7.4e-21 Score=171.13 Aligned_cols=200 Identities=25% Similarity=0.294 Sum_probs=148.3
Q ss_pred cEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc---chhhcCCCCCcEEEccc
Q 038551 37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL---PLGIFNLVSLQHLDISW 113 (366)
Q Consensus 37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l---~~~~~~l~~L~~L~l~~ 113 (366)
+.++++++.++.+|.. ..+++++|++++|.++.++..+|..+++|++|++++| .++.+ +..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence 5788888899988864 3368999999999999999988899999999999999 55544 56677899999999999
Q ss_pred cccccccccccCCCCCCEEEcccccccCccCh-hhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccc
Q 038551 114 TGITTLPIELKYLVNLKCLNLEYTFRLSRIPQ-QVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLN 192 (366)
Q Consensus 114 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 192 (366)
|.++.+|..+..+++|++|++++| .+..++. ..+..+++|++|++.+|.+.. ..+..+..+++|+
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~ 153 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRV-------------AFNGIFNGLSSLE 153 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEE-------------CSTTTTTTCTTCC
T ss_pred CccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCc-------------cchhhcccCcCCC
Confidence 999999988999999999999995 5555553 348899999999999999875 4556678889999
Q ss_pred eeeeccccchh--hHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEe
Q 038551 193 LLTITLQSFGA--LQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELK 257 (366)
Q Consensus 193 ~L~l~~~~~~~--~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~ 257 (366)
.|++++|.+.. ++. .+..+++ ++.|+++++. +.......+..+++|++|++++|.++.++
T Consensus 154 ~L~l~~n~l~~~~~~~--~~~~l~~--L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 154 VLKMAGNSFQENFLPD--IFTELRN--LTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp EEECTTCEEGGGEECS--CCTTCTT--CCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred EEECCCCccccccchh--HHhhCcC--CCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence 99999987764 221 1222232 3334443321 11111122455566666666666555443
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=4.6e-21 Score=173.04 Aligned_cols=154 Identities=15% Similarity=0.255 Sum_probs=106.1
Q ss_pred CcccEEEcccCCccc---cCCC-CCCCCccEEEccC-CCCc-cccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 038551 34 KETTRMSLMQNAIQN---LTEI-PTCPRLRTLFLPS-NHLG-TVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQ 107 (366)
Q Consensus 34 ~~L~~L~l~~~~~~~---l~~~-~~~~~L~~L~l~~-~~~~-~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 107 (366)
.+++.|+++++.+.+ +|.. ..+++|++|++++ |.+. .+|.. +..+++|++|++++|...+.+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467778888777764 4544 6777777777774 6664 45544 67777788888777744346777777777778
Q ss_pred EEEccccccc-cccccccCCCCCCEEEcccccccCccChhhhcCCc-CCcEEEeecCCccccccccccccCCchhhhhhh
Q 038551 108 HLDISWTGIT-TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLK-MLRALRMFECGFNVELEADSILFGDSEVLVEEL 185 (366)
Q Consensus 108 ~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (366)
+|++++|.++ .+|..+..+++|++|++++|...+.+|.. +..++ +|++|++.+|.+.+ ..+..+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~-------------~~~~~~ 194 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG-------------KIPPTF 194 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE-------------ECCGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec-------------cCChHH
Confidence 8888777776 66767777777788877775544466665 66665 77777777777764 444555
Q ss_pred hcCcccceeeeccccchh
Q 038551 186 LVLKHLNLLTITLQSFGA 203 (366)
Q Consensus 186 ~~l~~L~~L~l~~~~~~~ 203 (366)
..++ |+.|++++|.+.+
T Consensus 195 ~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp GGCC-CSEEECCSSEEEE
T ss_pred hCCc-ccEEECcCCcccC
Confidence 5555 7777777766553
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=8e-21 Score=172.56 Aligned_cols=224 Identities=25% Similarity=0.226 Sum_probs=150.5
Q ss_pred CCccEEEecCCCcccCC-CCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccC
Q 038551 12 EKENFLVLAGVGLTEAP-SIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSY 89 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~ 89 (366)
.....+++.++++..+| .+.++++|++|++++|.++.+|.. ..+++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCC
Confidence 45666777777777774 466677777788877777776665 6777777788777777777666 67777788887777
Q ss_pred CCCCCCcchhhcC---------CCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEee
Q 038551 90 NRSLENLPLGIFN---------LVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMF 160 (366)
Q Consensus 90 ~~~~~~l~~~~~~---------l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 160 (366)
|...+.+|..+.. +++|++|++++|.++.+|..+..+++|++|++++ +.+..+|.. +..+++|++|++.
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEELDLR 237 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCEEECT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCEEECc
Confidence 6566667665543 7777778887777777777777777788887777 355566665 6777777778777
Q ss_pred cCCccccccccccccCCchhhhhhhhcCcccceeeeccccchh-hHhHhhhcccCcccceeeeccccCCCCCcchhhhcc
Q 038551 161 ECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA-LQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFAS 239 (366)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~ 239 (366)
+|.+.+ ..+..+..+++|+.|++++|...+ ++.. +.++++ ++.|+++++......+ ..+..
T Consensus 238 ~n~~~~-------------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~--~~~l~~--L~~L~L~~n~~~~~iP-~~l~~ 299 (328)
T 4fcg_A 238 GCTALR-------------NYPPIFGGRAPLKRLILKDCSNLLTLPLD--IHRLTQ--LEKLDLRGCVNLSRLP-SLIAQ 299 (328)
T ss_dssp TCTTCC-------------BCCCCTTCCCCCCEEECTTCTTCCBCCTT--GGGCTT--CCEEECTTCTTCCCCC-GGGGG
T ss_pred CCcchh-------------hhHHHhcCCCCCCEEECCCCCchhhcchh--hhcCCC--CCEEeCCCCCchhhcc-HHHhh
Confidence 777765 455666777777777777765442 2211 233333 4446666554433333 33677
Q ss_pred CCcCcEEEeccCccceE
Q 038551 240 LRHLRTLQLYFNDLEEL 256 (366)
Q Consensus 240 ~~~L~~L~l~~~~l~~l 256 (366)
+++|+.+++..+.+..+
T Consensus 300 L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 300 LPANCIILVPPHLQAQL 316 (328)
T ss_dssp SCTTCEEECCGGGSCC-
T ss_pred ccCceEEeCCHHHHHHH
Confidence 77777777776644433
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=7.3e-20 Score=178.40 Aligned_cols=130 Identities=19% Similarity=0.250 Sum_probs=109.5
Q ss_pred CCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEE
Q 038551 31 GMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHL 109 (366)
Q Consensus 31 ~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L 109 (366)
..+...+.++++++.++.+|... .+++++|++++|.+..+++..|..+++|++|++++| .++.+ |..+.++++|++|
T Consensus 28 ~~~~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 28 FSNELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp -----CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEE
T ss_pred cccCCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEE
Confidence 34556689999999999988752 289999999999999998777999999999999999 55555 6779999999999
Q ss_pred EccccccccccccccCCCCCCEEEcccccccCccC--hhhhcCCcCCcEEEeecCCccc
Q 038551 110 DISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIP--QQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 110 ~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
++++|.++.+|.. .+++|++|++++| .+..++ .. ++++++|++|++.+|.+..
T Consensus 106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 106 DVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp ECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECSBCCT
T ss_pred ECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCCcccc
Confidence 9999999999987 8999999999995 555544 44 8999999999999998874
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=7.7e-21 Score=174.55 Aligned_cols=228 Identities=18% Similarity=0.156 Sum_probs=172.7
Q ss_pred CccEEEecCCCcccCC--CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551 13 KENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS 88 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~ 88 (366)
..+.+++.++.+.+++ .+.++++|+.|++++|.++.++.. ..+++|++|++++|.++.+++.++..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 6778899999999885 499999999999999999997543 889999999999999999998888999999999999
Q ss_pred CCCCCCCcch--hhcCCCCCcEEEcccc-cccccc-ccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCc
Q 038551 89 YNRSLENLPL--GIFNLVSLQHLDISWT-GITTLP-IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGF 164 (366)
Q Consensus 89 ~~~~~~~l~~--~~~~l~~L~~L~l~~~-~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 164 (366)
+| .++.+|. .+.++++|++|++++| .++.++ ..+..+++|++|++++|......+.. +..+++|++|++.+|.+
T Consensus 133 ~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 133 GN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS-LKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSCS
T ss_pred CC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH-HhccccCCeecCCCCcc
Confidence 99 6777776 6889999999999999 577665 46899999999999995444433444 88999999999999998
Q ss_pred cccccccccccCCchhhhhhhhcCcccceeeeccccchhhH--hHhhhcccCcccceeeeccccCCCCCcc---h-hhhc
Q 038551 165 NVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQ--RLLSYCRLGSISTQCLCLRHLNNSNSLS---V-FAFA 238 (366)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~l~~~~~l~~l~l~~L~~~~~~~~~~~~---~-~~l~ 238 (366)
.. .....+..+++|+.|++++|.+..++ .+........ +..+++..+. +.... + ..+.
T Consensus 211 ~~-------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~--l~~l~L~~~~-l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 211 IL-------------LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL--IKKFTFRNVK-ITDESLFQVMKLLN 274 (353)
T ss_dssp TT-------------HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC--CCEEEEESCB-CCHHHHHHHHHHHH
T ss_pred cc-------------chhhhhhhcccccEEECCCCccccccccccccccccch--hhcccccccc-ccCcchhhhHHHHh
Confidence 64 33334556899999999999887642 1111111111 2223332221 11111 1 2356
Q ss_pred cCCcCcEEEeccCccceEec
Q 038551 239 SLRHLRTLQLYFNDLEELKI 258 (366)
Q Consensus 239 ~~~~L~~L~l~~~~l~~l~~ 258 (366)
.+++|++|++++|.++.++.
T Consensus 275 ~l~~L~~L~Ls~N~l~~i~~ 294 (353)
T 2z80_A 275 QISGLLELEFSRNQLKSVPD 294 (353)
T ss_dssp TCTTCCEEECCSSCCCCCCT
T ss_pred cccCCCEEECCCCCCCccCH
Confidence 78889999999988886664
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=3.1e-20 Score=175.65 Aligned_cols=245 Identities=19% Similarity=0.218 Sum_probs=187.5
Q ss_pred cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccc
Q 038551 35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISW 113 (366)
Q Consensus 35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~ 113 (366)
..+.++..+..++.+|.. -.++++.|++++|.+..+++..|..+++|++|++++| .++.++ ..+.++++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCC
Confidence 457889989999988865 2368999999999999988777999999999999999 555554 6789999999999999
Q ss_pred cccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccc
Q 038551 114 TGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLN 192 (366)
Q Consensus 114 ~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 192 (366)
|.++.++. .+..+++|++|++++ +.+..++...+.++++|++|++.+|.... ......+..+++|+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~------------~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLS------------YISEGAFEGLSNLR 188 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCC------------EECTTTTTTCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcc------------eeCcchhhcccccC
Confidence 99998887 489999999999999 56777877668999999999999965443 13334677899999
Q ss_pred eeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCC
Q 038551 193 LLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGF 272 (366)
Q Consensus 193 ~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~ 272 (366)
.|++++|.+..++.+.. +.+ ++.|+++++ .+.......+.++++|++|++++|.++.++...+ ..+
T Consensus 189 ~L~L~~n~l~~~~~~~~---l~~--L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~l 254 (440)
T 3zyj_A 189 YLNLAMCNLREIPNLTP---LIK--LDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF--------DNL 254 (440)
T ss_dssp EEECTTSCCSSCCCCTT---CSS--CCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS--------TTC
T ss_pred eecCCCCcCccccccCC---Ccc--cCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhh--------cCC
Confidence 99999999988776443 344 444666554 2232322347889999999999999998876544 567
Q ss_pred CCcceeeeecccceeEEeeccCccccccccccceEEeecCc
Q 038551 273 HSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK 313 (366)
Q Consensus 273 ~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~ 313 (366)
++|+.|+++-..+..+. -..+..+++ |+.|+|++|+
T Consensus 255 ~~L~~L~L~~N~l~~~~----~~~~~~l~~-L~~L~L~~Np 290 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLP----HDLFTPLHH-LERIHLHHNP 290 (440)
T ss_dssp TTCCEEECTTSCCCCCC----TTTTSSCTT-CCEEECCSSC
T ss_pred CCCCEEECCCCCCCccC----hhHhccccC-CCEEEcCCCC
Confidence 88888877622222111 112333677 8999999888
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=2.8e-20 Score=176.52 Aligned_cols=245 Identities=18% Similarity=0.175 Sum_probs=185.0
Q ss_pred cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEccc
Q 038551 35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHLDISW 113 (366)
Q Consensus 35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~ 113 (366)
..+.++..+..++.+|.. -.+++++|++++|.+..+++..|..+++|++|++++| .++.+ +..+.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCC
Confidence 357888888889888864 2368999999999999887777999999999999999 55554 46789999999999999
Q ss_pred ccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccc
Q 038551 114 TGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLN 192 (366)
Q Consensus 114 ~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 192 (366)
|.++.+|.. +..+++|++|++++ +.+..++...+.++++|++|++.+|.... ......+..+++|+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~------------~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLE------------YISEGAFEGLFNLK 199 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCC------------EECTTTTTTCTTCC
T ss_pred CcCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCcc------------ccChhhccCCCCCC
Confidence 999988875 88999999999999 56778887668999999999999965443 13334577899999
Q ss_pred eeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCC
Q 038551 193 LLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGF 272 (366)
Q Consensus 193 ~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~ 272 (366)
.|++++|.+..++.+.. +.+ ++.|+++++. +.......+.++++|++|++++|.++.+....+ ..+
T Consensus 200 ~L~L~~n~l~~~~~~~~---l~~--L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~l 265 (452)
T 3zyi_A 200 YLNLGMCNIKDMPNLTP---LVG--LEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF--------DGL 265 (452)
T ss_dssp EEECTTSCCSSCCCCTT---CTT--CCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSCCCEECTTTT--------TTC
T ss_pred EEECCCCcccccccccc---ccc--ccEEECcCCc-CcccCcccccCccCCCEEEeCCCcCceECHHHh--------cCC
Confidence 99999999988765443 343 4445555432 222222347889999999999999988765443 557
Q ss_pred CCcceeeeecccceeEEeeccCccccccccccceEEeecCc
Q 038551 273 HSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK 313 (366)
Q Consensus 273 ~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~ 313 (366)
++|+.|+++-..+..+. ...+..+++ |+.|+|++|+
T Consensus 266 ~~L~~L~L~~N~l~~~~----~~~~~~l~~-L~~L~L~~Np 301 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLP----HDLFTPLRY-LVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSSCCSCCC----TTSSTTCTT-CCEEECCSSC
T ss_pred CCCCEEECCCCcCCccC----hHHhccccC-CCEEEccCCC
Confidence 88888877522221111 112233667 8888888887
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=6.8e-20 Score=179.26 Aligned_cols=256 Identities=20% Similarity=0.165 Sum_probs=187.2
Q ss_pred eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEE
Q 038551 7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLI 86 (366)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~ 86 (366)
|.|.....+.+++.++++..+|.... ++|+.|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|+
T Consensus 35 ~~c~~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 35 RACLNNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELS 107 (622)
T ss_dssp HHHHHHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred ccccCCCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence 55666678899999999999975333 899999999999998887 68999999999999998886 579999999
Q ss_pred ccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551 87 LSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 87 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
+++| .++.+|. .+++|++|++++|.++.+|.. +++|++|++++| .+..+|. .+.+|+.|++.+|.+..
T Consensus 108 Ls~N-~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSN-PLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSC-CCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC
T ss_pred CcCC-cCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCC
Confidence 9999 7777776 568999999999999998864 589999999994 6666664 34679999999998874
Q ss_pred cccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEE
Q 038551 167 ELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTL 246 (366)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L 246 (366)
++ ..+++|+.|++++|.+..++.. .. .+..|.+.++.- +..+ ..+++|++|
T Consensus 176 --------------l~---~~~~~L~~L~Ls~N~l~~l~~~--~~-----~L~~L~L~~N~l-~~l~----~~~~~L~~L 226 (622)
T 3g06_A 176 --------------LP---MLPSGLQELSVSDNQLASLPTL--PS-----ELYKLWAYNNRL-TSLP----ALPSGLKEL 226 (622)
T ss_dssp --------------CC---CCCTTCCEEECCSSCCSCCCCC--CT-----TCCEEECCSSCC-SSCC----CCCTTCCEE
T ss_pred --------------Cc---ccCCCCcEEECCCCCCCCCCCc--cc-----hhhEEECcCCcc-cccC----CCCCCCCEE
Confidence 22 4468899999999988876542 22 244455554322 2111 124788999
Q ss_pred EeccCccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc-------ccCCcc
Q 038551 247 QLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK-------RLECAE 319 (366)
Q Consensus 247 ~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~-------~~~~~~ 319 (366)
++++|.++.++ ..+++|+.|+++-..+.. +. . .+++ |+.|++++|. +..+++
T Consensus 227 ~Ls~N~L~~lp------------~~l~~L~~L~Ls~N~L~~--lp-~-----~~~~-L~~L~Ls~N~L~~lp~~l~~l~~ 285 (622)
T 3g06_A 227 IVSGNRLTSLP------------VLPSELKELMVSGNRLTS--LP-M-----LPSG-LLSLSVYRNQLTRLPESLIHLSS 285 (622)
T ss_dssp ECCSSCCSCCC------------CCCTTCCEEECCSSCCSC--CC-C-----CCTT-CCEEECCSSCCCSCCGGGGGSCT
T ss_pred EccCCccCcCC------------CCCCcCcEEECCCCCCCc--CC-c-----cccc-CcEEeCCCCCCCcCCHHHhhccc
Confidence 99888887665 345777777775211110 11 0 1344 7777777666 456667
Q ss_pred cccccCCCCCCC
Q 038551 320 LKELPLDCNHGL 331 (366)
Q Consensus 320 L~~L~l~~n~~~ 331 (366)
|+.|++++|++.
T Consensus 286 L~~L~L~~N~l~ 297 (622)
T 3g06_A 286 ETTVNLEGNPLS 297 (622)
T ss_dssp TCEEECCSCCCC
T ss_pred cCEEEecCCCCC
Confidence 777777777665
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=2e-19 Score=170.48 Aligned_cols=277 Identities=21% Similarity=0.187 Sum_probs=162.2
Q ss_pred CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551 12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 91 (366)
...+.+++.++++.++|.+ .++|+.|++++|.++.+|. ..++|++|++++|.+..++.. .++|++|++++|
T Consensus 71 ~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n- 141 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN- 141 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-
T ss_pred cCCCEEEecCCccccCCCC--cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCC----CCCCCEEECcCC-
Confidence 3456778888888777664 3678888888887777664 346677777777766665532 256777777777
Q ss_pred CCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccccc
Q 038551 92 SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEAD 171 (366)
Q Consensus 92 ~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 171 (366)
.++.+| .++++++|++|++++|.++.+|.. ..+|++|++++| .+..+| . +.++++|++|++.+|.+.+.....
T Consensus 142 ~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n-~l~~l~-~-~~~l~~L~~L~l~~N~l~~l~~~~ 214 (454)
T 1jl5_A 142 QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNN-QLEELP-E-LQNLPFLTAIYADNNSLKKLPDLP 214 (454)
T ss_dssp CCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSSCC-C-CTTCTTCCEEECCSSCCSSCCCCC
T ss_pred CCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCC-cCCcCc-c-ccCCCCCCEEECCCCcCCcCCCCc
Confidence 455566 366777777777777776666643 246777777763 444455 2 666667777777666665311000
Q ss_pred c-c-----ccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcE
Q 038551 172 S-I-----LFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRT 245 (366)
Q Consensus 172 ~-~-----~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~ 245 (366)
. . ........+ .+..+++|+.|++++|.+.+++.. . . .++.|++..+.- ...+ ...++|++
T Consensus 215 ~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~--~---~--~L~~L~l~~N~l-~~l~----~~~~~L~~ 281 (454)
T 1jl5_A 215 LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL--P---P--SLEALNVRDNYL-TDLP----ELPQSLTF 281 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC--C---T--TCCEEECCSSCC-SCCC----CCCTTCCE
T ss_pred CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCccccc--c---c--ccCEEECCCCcc-cccC----cccCcCCE
Confidence 0 0 000000111 255666666677766666554431 1 1 234444443321 1111 11356777
Q ss_pred EEeccCccceEeccccccccccccCCCCCcceeeee---------c-ccceeEEeeccCccccc----cccccceEEeec
Q 038551 246 LQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK---------I-LKIEARDMACTCSQYQA----CPRGLTKFEEHP 311 (366)
Q Consensus 246 L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~---------l-~~l~~L~l~~~c~~l~~----~~~~L~~L~l~~ 311 (366)
|++++|.++.++ ...++|+.|+++ + .+++.|+++ ++ .++. +++ |++|++++
T Consensus 282 L~ls~N~l~~l~------------~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls-~N-~l~~lp~~~~~-L~~L~L~~ 346 (454)
T 1jl5_A 282 LDVSENIFSGLS------------ELPPNLYYLNASSNEIRSLCDLPPSLEELNVS-NN-KLIELPALPPR-LERLIASF 346 (454)
T ss_dssp EECCSSCCSEES------------CCCTTCCEEECCSSCCSEECCCCTTCCEEECC-SS-CCSCCCCCCTT-CCEEECCS
T ss_pred EECcCCccCccc------------CcCCcCCEEECcCCcCCcccCCcCcCCEEECC-CC-ccccccccCCc-CCEEECCC
Confidence 777777666553 112566666665 1 345667776 55 2333 455 88888888
Q ss_pred Cccc----CCcccccccCCCCCCCC
Q 038551 312 LKRL----ECAELKELPLDCNHGLE 332 (366)
Q Consensus 312 ~~~~----~~~~L~~L~l~~n~~~~ 332 (366)
|.+. .+++|+.|++++|++.+
T Consensus 347 N~l~~lp~~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 347 NHLAEVPELPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp SCCSCCCCCCTTCCEEECCSSCCSS
T ss_pred CccccccchhhhccEEECCCCCCCc
Confidence 8722 45678889999888865
No 57
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.2e-19 Score=160.29 Aligned_cols=198 Identities=27% Similarity=0.378 Sum_probs=159.2
Q ss_pred CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCC
Q 038551 13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN 90 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~ 90 (366)
..+.+++.++++..+|... .++++.|++++|.+..++.. ..+++|++|++++|.+..+++.+|..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4578899999999987532 27899999999999998753 78999999999999999999887889999999999999
Q ss_pred CCCCCcc-hhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccc
Q 038551 91 RSLENLP-LGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVEL 168 (366)
Q Consensus 91 ~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 168 (366)
.++.+| ..+.++++|++|++++|.++.++.. +..+++|++|++++ +.+..++...+..+++|++|++.+|.+..
T Consensus 96 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-- 171 (270)
T 2o6q_A 96 -KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKR-- 171 (270)
T ss_dssp -CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC--
T ss_pred -cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcE--
Confidence 566665 4568899999999999999977754 78999999999999 56777777668899999999999998875
Q ss_pred cccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEe
Q 038551 169 EADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQL 248 (366)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l 248 (366)
.....+..+++|+.|++++|.+..++. ..+..+++|+.|++
T Consensus 172 -----------~~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------------~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 172 -----------VPEGAFDKLTELKTLKLDNNQLKRVPE----------------------------GAFDSLEKLKMLQL 212 (270)
T ss_dssp -----------CCTTTTTTCTTCCEEECCSSCCSCCCT----------------------------TTTTTCTTCCEEEC
T ss_pred -----------eChhHhccCCCcCEEECCCCcCCcCCH----------------------------HHhccccCCCEEEe
Confidence 334456778888888888776654321 11455677788888
Q ss_pred ccCccc
Q 038551 249 YFNDLE 254 (366)
Q Consensus 249 ~~~~l~ 254 (366)
++|.+.
T Consensus 213 ~~N~~~ 218 (270)
T 2o6q_A 213 QENPWD 218 (270)
T ss_dssp CSSCBC
T ss_pred cCCCee
Confidence 777654
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=3.5e-19 Score=168.75 Aligned_cols=143 Identities=19% Similarity=0.255 Sum_probs=73.6
Q ss_pred cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccc
Q 038551 35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWT 114 (366)
Q Consensus 35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 114 (366)
+|+.|++++|.++.+|....+++|++|++++|.+..+|.. .++|++|++++| .++.+| .++++++|++|++++|
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC
Confidence 4444444444444444334444444444444444443332 124444444444 333344 2455555555555555
Q ss_pred ccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccccee
Q 038551 115 GITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLL 194 (366)
Q Consensus 115 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 194 (366)
.++.+|.. .++|++|++++| .+..+|. +..+++|++|++.+|.+.+ .+. .++.|+.|
T Consensus 206 ~l~~l~~~---~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~--------------l~~---~~~~L~~L 262 (454)
T 1jl5_A 206 SLKKLPDL---PLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKT--------------LPD---LPPSLEAL 262 (454)
T ss_dssp CCSSCCCC---CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSS--------------CCS---CCTTCCEE
T ss_pred cCCcCCCC---cCcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCc--------------ccc---cccccCEE
Confidence 55544432 235666666653 4445553 6677777777777777653 111 13567777
Q ss_pred eeccccchhhHh
Q 038551 195 TITLQSFGALQR 206 (366)
Q Consensus 195 ~l~~~~~~~~~~ 206 (366)
++++|.+.+++.
T Consensus 263 ~l~~N~l~~l~~ 274 (454)
T 1jl5_A 263 NVRDNYLTDLPE 274 (454)
T ss_dssp ECCSSCCSCCCC
T ss_pred ECCCCcccccCc
Confidence 777777666543
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=2.3e-19 Score=158.86 Aligned_cols=222 Identities=22% Similarity=0.204 Sum_probs=162.8
Q ss_pred ccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551 14 ENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91 (366)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 91 (366)
...+.+.+.++..+|.-- .++++.|++++|.++.++.. ..+++|++|++++|.+..+++..+..+++|++|++++|
T Consensus 9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n- 86 (276)
T 2z62_A 9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN- 86 (276)
T ss_dssp TTEEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred CceEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-
Confidence 346778888888887522 26899999999999998753 88999999999999999988877999999999999999
Q ss_pred CCCCcc-hhhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCc--cChhhhcCCcCCcEEEeecCCcccc
Q 038551 92 SLENLP-LGIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSR--IPQQVISDLKMLRALRMFECGFNVE 167 (366)
Q Consensus 92 ~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~ 167 (366)
.++.++ ..+.++++|++|++++|.+..++. .+..+++|++|++++| .+.. +|.. +.++++|++|++.+|.+...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCcC
Confidence 555544 678999999999999999987776 5899999999999995 5544 4655 88999999999999998851
Q ss_pred ccccccccCCchhhhhhhhcCcccc-eeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEE
Q 038551 168 LEADSILFGDSEVLVEELLVLKHLN-LLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTL 246 (366)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L 246 (366)
. ...+..+..++.|. .|++++|.+..++... .... .++.|+++++. ++..+...+..+++|++|
T Consensus 165 ~----------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~--~~~~--~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 165 Y----------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA--FKEI--RLKELALDTNQ-LKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp C----------GGGGHHHHTCTTCCEEEECCSSCCCEECTTS--SCSC--CEEEEECCSSC-CSCCCTTTTTTCCSCCEE
T ss_pred C----------HHHhhhhhhccccceeeecCCCcccccCccc--cCCC--cccEEECCCCc-eeecCHhHhcccccccEE
Confidence 0 12233444444444 7888888777654211 1111 34555555433 222222335667777777
Q ss_pred EeccCccc
Q 038551 247 QLYFNDLE 254 (366)
Q Consensus 247 ~l~~~~l~ 254 (366)
++++|.+.
T Consensus 230 ~l~~N~~~ 237 (276)
T 2z62_A 230 WLHTNPWD 237 (276)
T ss_dssp ECCSSCBC
T ss_pred EccCCccc
Confidence 77777665
No 60
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=8.9e-20 Score=158.08 Aligned_cols=215 Identities=14% Similarity=0.244 Sum_probs=161.0
Q ss_pred eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCC-CccccchhhcCCCCCC
Q 038551 7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNH-LGTVSNNFFHSMASLR 83 (366)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~-~~~i~~~~~~~l~~L~ 83 (366)
|.|.......+.+.+ +..+|. -.++++.|++++|.++.++.. ..+++|++|++++|. ++.+++..|..+++|+
T Consensus 8 C~C~~~~~~~v~c~~--l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~ 83 (239)
T 2xwt_C 8 CECHQEEDFRVTCKD--IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83 (239)
T ss_dssp CSEEECSTTEEEECS--CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCC
T ss_pred CeeCCCCcceeEccC--ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCc
Confidence 665542344455654 778877 335899999999999998764 789999999999996 8999887789999999
Q ss_pred EEEccC-CCCCCCcc-hhhcCCCCCcEEEccccccccccccccCCCCCC---EEEcccccccCccChhhhcCCcCCc-EE
Q 038551 84 VLILSY-NRSLENLP-LGIFNLVSLQHLDISWTGITTLPIELKYLVNLK---CLNLEYTFRLSRIPQQVISDLKMLR-AL 157 (366)
Q Consensus 84 ~L~l~~-~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~---~L~l~~~~~~~~~~~~~~~~~~~L~-~L 157 (366)
+|++++ | .++.++ ..+.++++|++|++++|.++.+|. +..+++|+ +|++++|..+..++...+.++++|+ +|
T Consensus 84 ~L~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L 161 (239)
T 2xwt_C 84 HIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161 (239)
T ss_dssp EEEEEEET-TCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEE
T ss_pred EEECCCCC-CeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEE
Confidence 999998 7 666666 467889999999999999998887 78888888 9999995478888876688899999 99
Q ss_pred EeecCCccccccccccccCCchhhhhhhhcCcccceeeecccc-chhhHhHhhhcccCcccceeeeccccCCCCCcchhh
Q 038551 158 RMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQS-FGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFA 236 (366)
Q Consensus 158 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~ 236 (366)
++.+|.+.. .+......++|+.|++++|. +..++ ...
T Consensus 162 ~l~~n~l~~--------------i~~~~~~~~~L~~L~L~~n~~l~~i~----------------------------~~~ 199 (239)
T 2xwt_C 162 KLYNNGFTS--------------VQGYAFNGTKLDAVYLNKNKYLTVID----------------------------KDA 199 (239)
T ss_dssp ECCSCCCCE--------------ECTTTTTTCEEEEEECTTCTTCCEEC----------------------------TTT
T ss_pred EcCCCCCcc--------------cCHhhcCCCCCCEEEcCCCCCcccCC----------------------------HHH
Confidence 999998863 11222222567777776653 33221 112
Q ss_pred hccC-CcCcEEEeccCccceEeccccccccccccCCCCCcceeee
Q 038551 237 FASL-RHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFY 280 (366)
Q Consensus 237 l~~~-~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l 280 (366)
+..+ ++|++|++++|.++.++. ..+++|+.|++
T Consensus 200 ~~~l~~~L~~L~l~~N~l~~l~~-----------~~~~~L~~L~l 233 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQTSVTALPS-----------KGLEHLKELIA 233 (239)
T ss_dssp TTTCSBCCSEEECTTCCCCCCCC-----------TTCTTCSEEEC
T ss_pred hhccccCCcEEECCCCccccCCh-----------hHhccCceeec
Confidence 5566 788889998888887654 33666666655
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=2.7e-19 Score=159.27 Aligned_cols=201 Identities=22% Similarity=0.274 Sum_probs=147.0
Q ss_pred cEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEccccc
Q 038551 37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHLDISWTG 115 (366)
Q Consensus 37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~ 115 (366)
+.++.+++.++.+|.. ..++|+.|++++|.+..+++..+..+++|++|++++| .++.+ |..+.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence 6788888899888753 3569999999999999998877999999999999999 55555 6778999999999999996
Q ss_pred -cccc-cccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551 116 -ITTL-PIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL 193 (366)
Q Consensus 116 -~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 193 (366)
++.+ |..+..+++|++|++++| .+..++...+.++++|++|++.+|.+.. .....+..+++|+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQA-------------LPDDTFRDLGNLTH 157 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-------------CCTTTTTTCTTCCE
T ss_pred CccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccc-------------cCHhHhccCCCccE
Confidence 8877 556899999999999995 5556655458899999999999999875 44455778899999
Q ss_pred eeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEe
Q 038551 194 LTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELK 257 (366)
Q Consensus 194 L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~ 257 (366)
|++++|.+..++.- .+..+++ ++.|++.++. +.......+..+++|++|++++|.++.++
T Consensus 158 L~l~~n~l~~~~~~-~~~~l~~--L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 158 LFLHGNRISSVPER-AFRGLHS--LDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp EECCSSCCCEECTT-TTTTCTT--CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred EECCCCcccccCHH-HhcCccc--cCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 99999877754421 0222222 2233333321 11111122555566666666666555443
No 62
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=1.8e-19 Score=162.17 Aligned_cols=206 Identities=20% Similarity=0.240 Sum_probs=157.7
Q ss_pred CCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhc
Q 038551 22 VGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF 101 (366)
Q Consensus 22 ~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~ 101 (366)
..+.++.....+++|+.|++.++.+..++....+++|++|++++|.+..+++ +..+++|++|++++| .++.++ .+.
T Consensus 29 ~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~ 104 (308)
T 1h6u_A 29 SNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIA 104 (308)
T ss_dssp SSTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGT
T ss_pred CCcCceecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhc
Confidence 3344444455678899999999999888766788999999999999988877 788999999999999 567666 488
Q ss_pred CCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhh
Q 038551 102 NLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVL 181 (366)
Q Consensus 102 ~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
.+++|++|++++|.++.++. +..+++|++|++++ +.+..++. +..+++|++|++.+|.+.+ .
T Consensus 105 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~-------------~- 166 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL-NQITNISP--LAGLTNLQYLSIGNAQVSD-------------L- 166 (308)
T ss_dssp TCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCCC-------------C-
T ss_pred CCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCC-CccCcCcc--ccCCCCccEEEccCCcCCC-------------C-
Confidence 89999999999999988775 88899999999998 46666655 7788999999999998874 1
Q ss_pred hhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEec
Q 038551 182 VEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKI 258 (366)
Q Consensus 182 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~ 258 (366)
..+..+++|+.|++++|.+..++.+..+++ ++.|+++++.- .... .+..+++|+.|++++|.++..+.
T Consensus 167 -~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~-----L~~L~L~~N~l-~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 167 -TPLANLSKLTTLKADDNKISDISPLASLPN-----LIEVHLKNNQI-SDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCCGGGGGCTT-----CCEEECTTSCC-CBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred -hhhcCCCCCCEEECCCCccCcChhhcCCCC-----CCEEEccCCcc-Cccc--cccCCCCCCEEEccCCeeecCCe
Confidence 127788899999999988887766443333 44455555432 2222 26778888888888887776543
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=2.2e-20 Score=168.93 Aligned_cols=197 Identities=17% Similarity=0.122 Sum_probs=114.4
Q ss_pred CCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 038551 31 GMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQH 108 (366)
Q Consensus 31 ~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 108 (366)
..+++|+.|++++|.++.+++. ..+++|++|++++|.+..+++ +..+++|++|++++| .++.++ ..++|++
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~ 103 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL----VGPSIET 103 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEE----ECTTCCE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-cccccc----CCCCcCE
Confidence 3455777777777777765532 667777777777777765554 666777777777777 444443 2367777
Q ss_pred EEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhh-hc
Q 038551 109 LDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEEL-LV 187 (366)
Q Consensus 109 L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 187 (366)
|++++|.++.++.. .+++|++|++++ +.+..++...+..+++|++|++++|.+.. ..+..+ ..
T Consensus 104 L~l~~n~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~~ 167 (317)
T 3o53_A 104 LHAANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDT-------------VNFAELAAS 167 (317)
T ss_dssp EECCSSCCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCCE-------------EEGGGGGGG
T ss_pred EECCCCccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCCc-------------ccHHHHhhc
Confidence 77777777655532 356677777777 34444444336666777777777777664 223333 35
Q ss_pred CcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEe
Q 038551 188 LKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELK 257 (366)
Q Consensus 188 l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~ 257 (366)
+++|+.|++++|.+..++.... +++ ++.|+++++.- ...+ ..+..+++|++|++++|.++.++
T Consensus 168 l~~L~~L~L~~N~l~~~~~~~~---l~~--L~~L~Ls~N~l-~~l~-~~~~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDVKGQVV---FAK--LKTLDLSSNKL-AFMG-PEFQSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp TTTCCEEECTTSCCCEEECCCC---CTT--CCEEECCSSCC-CEEC-GGGGGGTTCSEEECTTSCCCEEC
T ss_pred cCcCCEEECCCCcCcccccccc---ccc--CCEEECCCCcC-Ccch-hhhcccCcccEEECcCCcccchh
Confidence 6677777777776665533222 222 33344433221 1111 12455566666666666555544
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=6.4e-21 Score=172.06 Aligned_cols=251 Identities=16% Similarity=0.094 Sum_probs=167.7
Q ss_pred CCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCcc--ccchhhc-------CCCCCCEEEccCCCCCCCcchh
Q 038551 30 IGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGT--VSNNFFH-------SMASLRVLILSYNRSLENLPLG 99 (366)
Q Consensus 30 ~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~--i~~~~~~-------~l~~L~~L~l~~~~~~~~l~~~ 99 (366)
++..++|+.|++.+|.+ .+|.. ... |+.|++++|.+.. ++.. +. .+++|++|++++|...+.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34456788888888888 65543 222 8888888887743 4544 33 6899999999999555577876
Q ss_pred h--cCCCCCcEEEccccccccccccccCC-----CCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccc
Q 038551 100 I--FNLVSLQHLDISWTGITTLPIELKYL-----VNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADS 172 (366)
Q Consensus 100 ~--~~l~~L~~L~l~~~~~~~l~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 172 (366)
+ ..+++|++|++++|.++.+|..+..+ ++|++|++++| .+..++...+.++++|++|++++|.+.+
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------ 187 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELG------ 187 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCH------
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCc------
Confidence 5 88999999999999998777766666 89999999984 5566664448899999999999998764
Q ss_pred cccCCchhhhhhh--hcCcccceeeeccccchhhHhHhh--hcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEe
Q 038551 173 ILFGDSEVLVEEL--LVLKHLNLLTITLQSFGALQRLLS--YCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQL 248 (366)
Q Consensus 173 ~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~l~~--~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l 248 (366)
....+..+ ..+++|+.|++++|.+..++.+.. ...+++ ++.|++++..-....+...+..+++|++|++
T Consensus 188 -----~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 188 -----ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ--LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp -----HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCC--CSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred -----chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCC--CCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence 11234444 788999999999998886544321 123344 4445554433222111122456788888888
Q ss_pred ccCccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCcccCCcccccccCCCC
Q 038551 249 YFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLKRLECAELKELPLDCN 328 (366)
Q Consensus 249 ~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~~~~~~~L~~L~l~~n 328 (366)
++|.++.++... +++|+.|++ + ++ .++..|. +..+++|+.|++++|
T Consensus 261 s~N~l~~ip~~~-----------~~~L~~L~L----------s-~N-~l~~~p~-----------~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 261 SFTGLKQVPKGL-----------PAKLSVLDL----------S-YN-RLDRNPS-----------PDELPQVGNLSLKGN 306 (312)
T ss_dssp TTSCCSSCCSSC-----------CSEEEEEEC----------C-SS-CCCSCCC-----------TTTSCEEEEEECTTC
T ss_pred CCCccChhhhhc-----------cCCceEEEC----------C-CC-CCCCChh-----------HhhCCCCCEEeccCC
Confidence 888877655211 144555444 3 22 3332332 456777888888888
Q ss_pred CCCC
Q 038551 329 HGLE 332 (366)
Q Consensus 329 ~~~~ 332 (366)
++.+
T Consensus 307 ~l~~ 310 (312)
T 1wwl_A 307 PFLD 310 (312)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 7754
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=8.1e-19 Score=156.51 Aligned_cols=155 Identities=20% Similarity=0.192 Sum_probs=81.7
Q ss_pred CCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 038551 32 MWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDI 111 (366)
Q Consensus 32 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 111 (366)
++++++.+++.++.++.+|.. -.++++.|++++|.++.+++..+..+++|++|++++| .++.++.. ..+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEEC
Confidence 345555555555555555433 1145555555555555554444555555666666555 44444432 45555566666
Q ss_pred cccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccc
Q 038551 112 SWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHL 191 (366)
Q Consensus 112 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 191 (366)
++|.++.+|..+..+++|++|++++ +.+..++...+.++++|++|++.+|.+.. .....+..+++|
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L 150 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKT-------------LPPGLLTPTPKL 150 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCC-------------CCTTTTTTCTTC
T ss_pred CCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCc-------------cChhhcccccCC
Confidence 6555555555555555566666655 34444443335555556666665555543 222334445555
Q ss_pred ceeeeccccchh
Q 038551 192 NLLTITLQSFGA 203 (366)
Q Consensus 192 ~~L~l~~~~~~~ 203 (366)
+.|++++|.+..
T Consensus 151 ~~L~L~~N~l~~ 162 (290)
T 1p9a_G 151 EKLSLANNNLTE 162 (290)
T ss_dssp CEEECTTSCCSC
T ss_pred CEEECCCCcCCc
Confidence 555555554443
No 66
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=1.1e-18 Score=152.37 Aligned_cols=181 Identities=25% Similarity=0.293 Sum_probs=153.8
Q ss_pred eeccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCC
Q 038551 6 ASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLR 83 (366)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~ 83 (366)
+|.|. +..+.+++.++++..+|.-.. +.++.|++++|.+..++.. ..+++|++|++++|.+..+++..+..+++|+
T Consensus 9 gC~C~-~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 9 GCTCN-EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86 (251)
T ss_dssp SSEEE-GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ceEcC-CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence 46664 345678999999999975332 7999999999999997654 8899999999999999988888789999999
Q ss_pred EEEccCCCCCCCcc-hhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeec
Q 038551 84 VLILSYNRSLENLP-LGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFE 161 (366)
Q Consensus 84 ~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (366)
+|++++| .++.++ ..+..+++|++|++++|.++.++.. +..+++|++|++++ +.+..++...+..+++|++|++.+
T Consensus 87 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 87 TLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp EEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCC
Confidence 9999999 556555 5578999999999999999988875 68999999999999 577777776588999999999999
Q ss_pred CCccccccccccccCCchhhhhhhhcCcccceeeeccccchh
Q 038551 162 CGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA 203 (366)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 203 (366)
|.+.. .....+..+++|+.|++++|.+..
T Consensus 165 N~l~~-------------~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 165 NQLQS-------------VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SCCSC-------------CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCCc-------------cCHHHHhCCCCCCEEEeeCCceeC
Confidence 99986 445577889999999999998753
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=2.1e-18 Score=153.82 Aligned_cols=181 Identities=25% Similarity=0.263 Sum_probs=153.1
Q ss_pred eccCc-CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCC
Q 038551 7 STINK-EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLR 83 (366)
Q Consensus 7 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~ 83 (366)
|.+.. .+.+.+.+.++++..+|.-. .++++.|++++|.+..++.. ..+++|++|++++|.++.++.. ..+++|+
T Consensus 4 C~~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 4 CEVSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp SEEECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 44443 56678899999999996432 37999999999999987543 8899999999999999988763 7899999
Q ss_pred EEEccCCCCCCCcchhhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecC
Q 038551 84 VLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC 162 (366)
Q Consensus 84 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (366)
+|++++| .++.+|..+..+++|++|++++|.++.+|. .+..+++|++|++++ +.+..++...+..+++|+.|++.+|
T Consensus 81 ~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCC
Confidence 9999999 788899888999999999999999998875 589999999999999 5777888776889999999999999
Q ss_pred CccccccccccccCCchhhhhhhhcCcccceeeeccccchhhH
Q 038551 163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQ 205 (366)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 205 (366)
++.. .....+..+++|+.|++++|.+..++
T Consensus 159 ~l~~-------------l~~~~~~~l~~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 159 NLTE-------------LPAGLLNGLENLDTLLLQENSLYTIP 188 (290)
T ss_dssp CCSC-------------CCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCCc-------------cCHHHhcCcCCCCEEECCCCcCCccC
Confidence 9985 33445677899999999988776543
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=2.6e-18 Score=151.78 Aligned_cols=158 Identities=23% Similarity=0.294 Sum_probs=75.8
Q ss_pred CCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcE
Q 038551 30 IGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQH 108 (366)
Q Consensus 30 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~ 108 (366)
...+++|+.|++.++.+..++....+++|++|++++|.+..++. +..+++|++|++++| .++.++ ..+.++++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence 33444555555555555544444445555555555555544431 445555555555555 333332 22345555555
Q ss_pred EEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhc
Q 038551 109 LDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLV 187 (366)
Q Consensus 109 L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (366)
|++++|.++.++.. +..+++|++|++++| .+..++...+..+++|++|++.+|.+.+ .....+..
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~ 179 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS-------------LPEGVFDK 179 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-------------CCTTTTTT
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCc-------------cCHHHhcC
Confidence 55555555544433 445555555555552 3334443334455555555555555443 22233344
Q ss_pred Ccccceeeeccccchhh
Q 038551 188 LKHLNLLTITLQSFGAL 204 (366)
Q Consensus 188 l~~L~~L~l~~~~~~~~ 204 (366)
+++|+.|++++|.+.++
T Consensus 180 l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp CTTCCEEECCSSCCSCC
T ss_pred CccCCEEECCCCcCCcc
Confidence 55555555555554443
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=8.8e-19 Score=154.86 Aligned_cols=151 Identities=19% Similarity=0.280 Sum_probs=72.2
Q ss_pred cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccc
Q 038551 35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWT 114 (366)
Q Consensus 35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 114 (366)
++..+++.++.+.+......+++|+.|++++|.+..++. +..+++|++|++++| .++.++ .+..+++|++|++++|
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTS
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCC
Confidence 333344444444433323444555555555555544433 444555555555555 333332 3455555555555555
Q ss_pred cccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551 115 GITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL 193 (366)
Q Consensus 115 ~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 193 (366)
.++.++.. +..+++|++|++++| .+..++...+..+++|++|++.+|.+.. .....+..+++|+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------~~~~~~~~l~~L~~ 161 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQS-------------LPKGVFDKLTNLTE 161 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-------------CCTTTTTTCTTCCE
T ss_pred ccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCc-------------cCHHHhccCccCCE
Confidence 55544432 355555555555552 3334443334455555555555555543 22233344555555
Q ss_pred eeeccccchh
Q 038551 194 LTITLQSFGA 203 (366)
Q Consensus 194 L~l~~~~~~~ 203 (366)
|++++|.+..
T Consensus 162 L~l~~n~l~~ 171 (272)
T 3rfs_A 162 LDLSYNQLQS 171 (272)
T ss_dssp EECCSSCCCC
T ss_pred EECCCCCcCc
Confidence 5555554443
No 70
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=8.3e-18 Score=165.78 Aligned_cols=125 Identities=25% Similarity=0.267 Sum_probs=110.9
Q ss_pred CCccEEEecCCCcccCC--CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEc
Q 038551 12 EKENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLIL 87 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l 87 (366)
...+.+++.++.+..++ .+.++++|++|++++|.++.+++. ..+++|++|++++|.+..+++++|..+++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 35678999999999994 589999999999999999998764 78999999999999999999988999999999999
Q ss_pred cCCCCCCCcch-hhcCCCCCcEEEcccccccc--ccccccCCCCCCEEEcccc
Q 038551 88 SYNRSLENLPL-GIFNLVSLQHLDISWTGITT--LPIELKYLVNLKCLNLEYT 137 (366)
Q Consensus 88 ~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~--l~~~l~~l~~L~~L~l~~~ 137 (366)
++| .++.++. .++++++|++|++++|.++. +|..+..+++|++|++++|
T Consensus 132 s~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 132 VET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 999 6666664 58999999999999999874 5667889999999999885
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=8.2e-18 Score=148.45 Aligned_cols=175 Identities=23% Similarity=0.324 Sum_probs=151.8
Q ss_pred CccEEEecCCCcccCC--CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551 13 KENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS 88 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~ 88 (366)
..+.+++.++.+..++ .+.++++|+.|++++|.++.++.. ..+++|++|++++|.+..+++..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 4678889999999885 589999999999999999998765 679999999999999999998878999999999999
Q ss_pred CCCCCCCcc-hhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551 89 YNRSLENLP-LGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 89 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
+| .++.++ ..+.++++|++|++++|.++.+|.. +..+++|++|++++ +.+..++...+.++++|++|++.+|.+..
T Consensus 118 ~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 118 RN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 99 555554 5578999999999999999988875 78999999999999 56777776668899999999999999875
Q ss_pred cccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551 167 ELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG 202 (366)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 202 (366)
.....+..+++|+.|++++|...
T Consensus 196 -------------~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 196 -------------VPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp -------------CCTTTTTTCTTCCEEECCSSCBC
T ss_pred -------------CCHHHhccccCCCEEEecCCCee
Confidence 33455778899999999998753
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=1.1e-17 Score=150.63 Aligned_cols=181 Identities=20% Similarity=0.274 Sum_probs=155.4
Q ss_pred CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551 12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 91 (366)
...+.+.+.++++..++.+..+++|+.|++++|.+..++....+++|++|++++|.+..++. +..+++|++|++++|
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n- 117 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTST- 117 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTS-
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCC-
Confidence 35678888999999999999999999999999999998777889999999999999988764 889999999999999
Q ss_pred CCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccccc
Q 038551 92 SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEAD 171 (366)
Q Consensus 92 ~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 171 (366)
.++.++. +..+++|++|++++|.++.++. +..+++|++|++++| .+..++. +..+++|++|++.+|.+.+
T Consensus 118 ~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~----- 187 (308)
T 1h6u_A 118 QITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKISD----- 187 (308)
T ss_dssp CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC-----
T ss_pred CCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCccCc-----
Confidence 6777765 8899999999999999998876 889999999999995 6666665 7899999999999999875
Q ss_pred ccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCc
Q 038551 172 SILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGS 215 (366)
Q Consensus 172 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~ 215 (366)
. ..+..+++|+.|++++|.+..++.+..+++++.
T Consensus 188 --------~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~ 221 (308)
T 1h6u_A 188 --------I--SPLASLPNLIEVHLKNNQISDVSPLANTSNLFI 221 (308)
T ss_dssp --------C--GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCE
T ss_pred --------C--hhhcCCCCCCEEEccCCccCccccccCCCCCCE
Confidence 1 127889999999999999988776544444333
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.3e-18 Score=157.30 Aligned_cols=251 Identities=13% Similarity=0.073 Sum_probs=185.6
Q ss_pred cccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcc
Q 038551 35 ETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDIS 112 (366)
Q Consensus 35 ~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 112 (366)
.++..+++.+.+...+.. ..+++|++|++++|.+..+++..+..+++|++|++++| .++..++ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECc
Confidence 455566666777654333 66789999999999999888777999999999999999 5555554 8899999999999
Q ss_pred ccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccc
Q 038551 113 WTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLN 192 (366)
Q Consensus 113 ~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 192 (366)
+|.++.++. .++|++|++++ +.+..++.. .+++|++|++.+|.+.. .....+..+++|+
T Consensus 89 ~n~l~~l~~----~~~L~~L~l~~-n~l~~~~~~---~~~~L~~L~l~~N~l~~-------------~~~~~~~~l~~L~ 147 (317)
T 3o53_A 89 NNYVQELLV----GPSIETLHAAN-NNISRVSCS---RGQGKKNIYLANNKITM-------------LRDLDEGCRSRVQ 147 (317)
T ss_dssp SSEEEEEEE----CTTCCEEECCS-SCCSEEEEC---CCSSCEEEECCSSCCCS-------------GGGBCTGGGSSEE
T ss_pred CCccccccC----CCCcCEEECCC-CccCCcCcc---ccCCCCEEECCCCCCCC-------------ccchhhhccCCCC
Confidence 999987763 48999999999 456665543 46889999999999986 4455677889999
Q ss_pred eeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCC
Q 038551 193 LLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGF 272 (366)
Q Consensus 193 ~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~ 272 (366)
.|++++|.+..++.-.-...++. ++.|+++++.- +... ....+++|++|++++|.++.++... ..+
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~~l~~--L~~L~L~~N~l-~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~---------~~l 213 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAASSDT--LEHLNLQYNFI-YDVK--GQVVFAKLKTLDLSSNKLAFMGPEF---------QSA 213 (317)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTT--CCEEECTTSCC-CEEE--CCCCCTTCCEEECCSSCCCEECGGG---------GGG
T ss_pred EEECCCCCCCcccHHHHhhccCc--CCEEECCCCcC-cccc--cccccccCCEEECCCCcCCcchhhh---------ccc
Confidence 99999998886532211223444 45566655432 2111 2445889999999999999887543 557
Q ss_pred CCcceeeeecccceeEEeeccCccccccccccceEEeecCc---------ccCCcccccccCCCC
Q 038551 273 HSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK---------RLECAELKELPLDCN 328 (366)
Q Consensus 273 ~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~---------~~~~~~L~~L~l~~n 328 (366)
++|+.|+++-..++.+ . . .+..+++ |+.|++++|+ +..++.|+.++++++
T Consensus 214 ~~L~~L~L~~N~l~~l--~-~--~~~~l~~-L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 214 AGVTWISLRNNKLVLI--E-K--ALRFSQN-LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTCSEEECTTSCCCEE--C-T--TCCCCTT-CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcccEEECcCCcccch--h-h--HhhcCCC-CCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 8999999974333322 2 1 2444677 9999999998 567888888877733
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=2.8e-19 Score=169.89 Aligned_cols=298 Identities=16% Similarity=0.146 Sum_probs=161.4
Q ss_pred ccEEEecCCCcccC------CCCCCCCcccEEEcccCCccccC--CC-CCCC----CccEEEccCCCCccc----cchhh
Q 038551 14 ENFLVLAGVGLTEA------PSIGMWKETTRMSLMQNAIQNLT--EI-PTCP----RLRTLFLPSNHLGTV----SNNFF 76 (366)
Q Consensus 14 ~~~~~~~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~l~--~~-~~~~----~L~~L~l~~~~~~~i----~~~~~ 76 (366)
.+.+++.++++.+. ..+..+++|++|++++|.+.+.. .. ..++ +|++|++++|.++.. .+..+
T Consensus 30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 109 (461)
T 1z7x_W 30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL 109 (461)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT
T ss_pred ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHH
Confidence 44555555555421 22444566666666666655411 11 1222 566666666666521 12235
Q ss_pred cCCCCCCEEEccCCCCCCCc-chhh-----cCCCCCcEEEcccccccc-----ccccccCCCCCCEEEcccccccCccCh
Q 038551 77 HSMASLRVLILSYNRSLENL-PLGI-----FNLVSLQHLDISWTGITT-----LPIELKYLVNLKCLNLEYTFRLSRIPQ 145 (366)
Q Consensus 77 ~~l~~L~~L~l~~~~~~~~l-~~~~-----~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~~~~~~~~ 145 (366)
..+++|++|++++| .++.. +..+ ...++|++|++++|.++. ++..+..+++|++|++++|. ++....
T Consensus 110 ~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~ 187 (461)
T 1z7x_W 110 RTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGV 187 (461)
T ss_dssp TSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHH
T ss_pred ccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHH
Confidence 56666666666666 23311 1111 123456666666666552 33445556667777776643 322211
Q ss_pred hhhc-----CCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhh--HhHhh-h-cccCcc
Q 038551 146 QVIS-----DLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGAL--QRLLS-Y-CRLGSI 216 (366)
Q Consensus 146 ~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~l~~-~-~~l~~l 216 (366)
..+. ..++|++|++.+|.+... .....+..+..+++|+.|++++|.+... ..+.. . ..++.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~---------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~- 257 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSD---------NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR- 257 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTT---------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC-
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHH---------HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCC-
Confidence 1121 244677777777766541 1112456667778888888888876542 11111 1 12233
Q ss_pred cceeeeccccCCCCCcch----hhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeee-----------
Q 038551 217 STQCLCLRHLNNSNSLSV----FAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK----------- 281 (366)
Q Consensus 217 ~l~~L~~~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~----------- 281 (366)
++.|++..+ .++.... ..+..+++|++|++++|.++........ ..+. ...++|+.|+++
T Consensus 258 -L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~--~~l~-~~~~~L~~L~L~~n~l~~~~~~~ 332 (461)
T 1z7x_W 258 -LRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC--ETLL-EPGCQLESLWVKSCSFTAACCSH 332 (461)
T ss_dssp -CCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH--HHHT-STTCCCCEEECTTSCCBGGGHHH
T ss_pred -ceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH--HHhc-cCCccceeeEcCCCCCchHHHHH
Confidence 556777665 3343321 2345678888888888876643322111 0000 223577777776
Q ss_pred -------cccceeEEeeccCccccc-------------cccccceEEeecCc------------ccCCcccccccCCCCC
Q 038551 282 -------ILKIEARDMACTCSQYQA-------------CPRGLTKFEEHPLK------------RLECAELKELPLDCNH 329 (366)
Q Consensus 282 -------l~~l~~L~l~~~c~~l~~-------------~~~~L~~L~l~~~~------------~~~~~~L~~L~l~~n~ 329 (366)
.+.++.|+++ +| .+++ .+. |++|++++|. +..+++|++|++++|.
T Consensus 333 l~~~l~~~~~L~~L~Ls-~n-~i~~~~~~~l~~~l~~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 333 FSSVLAQNRFLLELQIS-NN-RLEDAGVRELCQGLGQPGSV-LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHCSSCCEEECC-SS-BCHHHHHHHHHHHHTSTTCC-CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHhhCCCccEEEcc-CC-ccccccHHHHHHHHcCCCCc-eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 2455777777 66 2322 236 8888888887 4468888888888888
Q ss_pred CC
Q 038551 330 GL 331 (366)
Q Consensus 330 ~~ 331 (366)
+.
T Consensus 410 i~ 411 (461)
T 1z7x_W 410 LG 411 (461)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=2.6e-18 Score=164.24 Aligned_cols=198 Identities=17% Similarity=0.131 Sum_probs=141.7
Q ss_pred CCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 038551 31 GMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQH 108 (366)
Q Consensus 31 ~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 108 (366)
..+++|+.|++++|.+..+++. ..+++|++|++++|.+..+++ +..+++|++|++++| .++.+|. .++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCE
Confidence 3456899999999988887643 788899999999998876665 778899999999998 5665553 378999
Q ss_pred EEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhh-c
Q 038551 109 LDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELL-V 187 (366)
Q Consensus 109 L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 187 (366)
|++++|.++.++.. .+++|+.|++++| .+..++...+..+++|+.|++++|.+.+ ..+..+. .
T Consensus 104 L~L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~l~~~ 167 (487)
T 3oja_A 104 LHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT-------------VNFAELAAS 167 (487)
T ss_dssp EECCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCE-------------EEGGGGGGG
T ss_pred EECcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCC-------------cChHHHhhh
Confidence 99999988877653 5688999999985 4444443337788889999999998875 4455554 6
Q ss_pred CcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEec
Q 038551 188 LKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKI 258 (366)
Q Consensus 188 l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~ 258 (366)
+++|+.|++++|.+.+++.... +++ +..|+++++.- +..+ ..+..+++|+.|++++|.++.++.
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~---l~~--L~~L~Ls~N~l-~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~ 231 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDVKGQVV---FAK--LKTLDLSSNKL-AFMG-PEFQSAAGVTWISLRNNKLVLIEK 231 (487)
T ss_dssp TTTCCEEECTTSCCCEEECCCC---CTT--CCEEECCSSCC-CEEC-GGGGGGTTCSEEECTTSCCCEECT
T ss_pred CCcccEEecCCCcccccccccc---CCC--CCEEECCCCCC-CCCC-HhHcCCCCccEEEecCCcCcccch
Confidence 7889999999888877654332 333 33455544322 2221 126677788888888887776653
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=3.2e-18 Score=163.67 Aligned_cols=231 Identities=14% Similarity=0.096 Sum_probs=171.5
Q ss_pred CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEE
Q 038551 53 PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCL 132 (366)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L 132 (366)
..+++|++|++++|.+..+++..|..+++|++|++++| .++..++ +..+++|++|++++|.++.+|.. ++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEE
Confidence 45669999999999999888777999999999999999 5555544 88999999999999999887743 899999
Q ss_pred EcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcc
Q 038551 133 NLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCR 212 (366)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~ 212 (366)
++++| .+..++.. .+++|+.|++.+|.+.+ ..+..+..+++|+.|++++|.+.+...-.-...
T Consensus 105 ~L~~N-~l~~~~~~---~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~ 167 (487)
T 3oja_A 105 HAANN-NISRVSCS---RGQGKKNIYLANNKITM-------------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167 (487)
T ss_dssp ECCSS-CCCCEEEC---CCSSCEEEECCSSCCCS-------------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred ECcCC-cCCCCCcc---ccCCCCEEECCCCCCCC-------------CCchhhcCCCCCCEEECCCCCCCCcChHHHhhh
Confidence 99995 55555543 56889999999999986 556677889999999999998886432111223
Q ss_pred cCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeeecccceeEEeec
Q 038551 213 LGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMAC 292 (366)
Q Consensus 213 l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~ 292 (366)
++. +..|+++++.-.... ....+++|++|++++|.++.++... ..+++|+.|+++-..+.. +.
T Consensus 168 l~~--L~~L~Ls~N~l~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~---------~~l~~L~~L~Ls~N~l~~--lp- 230 (487)
T 3oja_A 168 SDT--LEHLNLQYNFIYDVK---GQVVFAKLKTLDLSSNKLAFMGPEF---------QSAAGVTWISLRNNKLVL--IE- 230 (487)
T ss_dssp TTT--CCEEECTTSCCCEEE---CCCCCTTCCEEECCSSCCCEECGGG---------GGGTTCSEEECTTSCCCE--EC-
T ss_pred CCc--ccEEecCCCcccccc---ccccCCCCCEEECCCCCCCCCCHhH---------cCCCCccEEEecCCcCcc--cc-
Confidence 444 445666554322222 2456899999999999999887543 457888888886322221 12
Q ss_pred cCccccccccccceEEeecCc---------ccCCcccccccCC
Q 038551 293 TCSQYQACPRGLTKFEEHPLK---------RLECAELKELPLD 326 (366)
Q Consensus 293 ~c~~l~~~~~~L~~L~l~~~~---------~~~~~~L~~L~l~ 326 (366)
. .+..+++ |+.|++++|+ +..++.|+.+.++
T Consensus 231 ~--~l~~l~~-L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 231 K--ALRFSQN-LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp T--TCCCCTT-CCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred h--hhccCCC-CCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 1 1333677 9999999988 5667777777764
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=2.3e-17 Score=146.00 Aligned_cols=152 Identities=21% Similarity=0.169 Sum_probs=124.5
Q ss_pred EEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEcccccc
Q 038551 38 RMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWTGI 116 (366)
Q Consensus 38 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~ 116 (366)
.++..+..+..+|.. -.++|++|++++|.+..+++..+..+++|++|++++| .++.++ ..+.++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCcc
Confidence 456666677777764 2257999999999999888866899999999999999 666655 4688999999999999999
Q ss_pred cccc-ccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceee
Q 038551 117 TTLP-IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLT 195 (366)
Q Consensus 117 ~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 195 (366)
+.++ ..+..+++|++|++++| .+..++...+.++++|++|++.+|.+.. ...+..+..+++|+.|+
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQS------------FKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCC------------CCCCGGGGGCTTCCEEE
T ss_pred CccChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccce------------ecCchhhccCCCCCEEE
Confidence 8776 45899999999999995 5555555448899999999999999874 12467788899999999
Q ss_pred eccccchhh
Q 038551 196 ITLQSFGAL 204 (366)
Q Consensus 196 l~~~~~~~~ 204 (366)
+++|.+..+
T Consensus 156 Ls~N~l~~~ 164 (276)
T 2z62_A 156 LSSNKIQSI 164 (276)
T ss_dssp CCSSCCCEE
T ss_pred CCCCCCCcC
Confidence 999987764
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=1.7e-17 Score=151.99 Aligned_cols=243 Identities=17% Similarity=0.165 Sum_probs=157.7
Q ss_pred eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCC-ccccchhhcCCCCCC
Q 038551 7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHL-GTVSNNFFHSMASLR 83 (366)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~-~~i~~~~~~~l~~L~ 83 (366)
|.|. .+.+.|.++++.++|.-- .++++.|++++|.++.++.. ..+++|++|++++|.+ +.++.++|..+++++
T Consensus 7 C~C~---~~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 7 CHCS---NRVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp SEEE---TTEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred cEee---CCEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 5553 246788888898887422 36788899998888888764 7788888888888877 457777788888876
Q ss_pred E-EEccCCCCCCCc-chhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCc-CCcEEEe
Q 038551 84 V-LILSYNRSLENL-PLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLK-MLRALRM 159 (366)
Q Consensus 84 ~-L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l 159 (366)
. +.+.+| .++.+ |..+.++++|++|++++|.++.+|.. +....++..+++.+++.+..++...+..+. .++.|++
T Consensus 83 ~~l~~~~N-~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 83 EIRIEKAN-NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp EEEEEEET-TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred hhhcccCC-cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 5 445556 55655 45677888888888888888877653 455667778888776677777765455543 5777777
Q ss_pred ecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhcc
Q 038551 160 FECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFAS 239 (366)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~ 239 (366)
.+|.+.. +........+|..+ .+.+...+...+...+.+
T Consensus 162 ~~N~i~~--------------i~~~~f~~~~L~~l---------------------------~l~~~n~l~~i~~~~f~~ 200 (350)
T 4ay9_X 162 NKNGIQE--------------IHNSAFNGTQLDEL---------------------------NLSDNNNLEELPNDVFHG 200 (350)
T ss_dssp CSSCCCE--------------ECTTSSTTEEEEEE---------------------------ECTTCTTCCCCCTTTTTT
T ss_pred ccccccC--------------CChhhccccchhHH---------------------------hhccCCcccCCCHHHhcc
Confidence 7777653 22222222334444 443333333333234678
Q ss_pred CCcCcEEEeccCccceEeccccccccccccCCCCCcceeeee-cccceeEEeeccCccccccccccceEEeecCc
Q 038551 240 LRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK-ILKIEARDMACTCSQYQACPRGLTKFEEHPLK 313 (366)
Q Consensus 240 ~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~-l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~ 313 (366)
+++|++|++++|.++.++. ..+.+|+.|... ... ++ .-+.+..+++ |+.+++.++.
T Consensus 201 l~~L~~LdLs~N~l~~lp~-----------~~~~~L~~L~~l~~~~-----l~-~lP~l~~l~~-L~~l~l~~~~ 257 (350)
T 4ay9_X 201 ASGPVILDISRTRIHSLPS-----------YGLENLKKLRARSTYN-----LK-KLPTLEKLVA-LMEASLTYPS 257 (350)
T ss_dssp EECCSEEECTTSCCCCCCS-----------SSCTTCCEEECTTCTT-----CC-CCCCTTTCCS-CCEEECSCHH
T ss_pred CcccchhhcCCCCcCccCh-----------hhhccchHhhhccCCC-----cC-cCCCchhCcC-hhhCcCCCCc
Confidence 8899999999999888775 335566666442 111 11 2223444667 8888876543
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=8e-19 Score=166.75 Aligned_cols=293 Identities=18% Similarity=0.129 Sum_probs=198.8
Q ss_pred cEEEecCCCcccCC---CCCCCCcccEEEcccCCccc-----cCCC-CCCCCccEEEccCCCCccc-cchhhcCCC----
Q 038551 15 NFLVLAGVGLTEAP---SIGMWKETTRMSLMQNAIQN-----LTEI-PTCPRLRTLFLPSNHLGTV-SNNFFHSMA---- 80 (366)
Q Consensus 15 ~~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~i-~~~~~~~l~---- 80 (366)
..+++.++.+.+.+ .+..+++|+.|++++|.+.. ++.. ..+++|++|++++|.++.. +..++..++
T Consensus 6 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 85 (461)
T 1z7x_W 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 85 (461)
T ss_dssp EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC
T ss_pred eehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCC
Confidence 45677777776552 25678899999999998884 3433 6788999999999988653 233344555
Q ss_pred CCCEEEccCCCCCC-----CcchhhcCCCCCcEEEccccccccc-----ccc-ccCCCCCCEEEcccccccCcc----Ch
Q 038551 81 SLRVLILSYNRSLE-----NLPLGIFNLVSLQHLDISWTGITTL-----PIE-LKYLVNLKCLNLEYTFRLSRI----PQ 145 (366)
Q Consensus 81 ~L~~L~l~~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~l-----~~~-l~~l~~L~~L~l~~~~~~~~~----~~ 145 (366)
+|++|++++| .++ .++..+..+++|++|++++|.++.. ... ....++|++|++++|...... +.
T Consensus 86 ~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 6999999999 455 4577788999999999999988632 222 234678999999996443322 22
Q ss_pred hhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhh-----cCcccceeeeccccchhhH--hHh-hhcccCccc
Q 038551 146 QVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELL-----VLKHLNLLTITLQSFGALQ--RLL-SYCRLGSIS 217 (366)
Q Consensus 146 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~--~l~-~~~~l~~l~ 217 (366)
. +..+++|++|++.+|.+.. ..+..+. ..++|+.|++++|.+.... .+. .+..+++
T Consensus 165 ~-l~~~~~L~~L~L~~n~i~~-------------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-- 228 (461)
T 1z7x_W 165 V-LRAKPDFKELTVSNNDINE-------------AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS-- 228 (461)
T ss_dssp H-HHHCTTCCEEECCSSBCHH-------------HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTT--
T ss_pred H-HhhCCCCCEEECcCCCcch-------------HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCC--
Confidence 2 5678899999999998875 3233332 3568999999998877521 111 1223333
Q ss_pred ceeeeccccCCCCCcchhhh-----ccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeee-----------
Q 038551 218 TQCLCLRHLNNSNSLSVFAF-----ASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK----------- 281 (366)
Q Consensus 218 l~~L~~~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~----------- 281 (366)
++.|+++.+. +....+..+ ..+++|++|++++|.++........ ..+ ..+++|+.|+++
T Consensus 229 L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~~l--~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 229 LRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC--RVL--RAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp CCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH--HHH--HHCTTCCEEECTTCCCHHHHHHH
T ss_pred ccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH--HHH--hhCCCcceEECCCCCCchHHHHH
Confidence 5557776653 333322212 2478999999999987763211110 111 347899999998
Q ss_pred --------cccceeEEeeccCccccc------------cccccceEEeecCc--------cc-----CCcccccccCCCC
Q 038551 282 --------ILKIEARDMACTCSQYQA------------CPRGLTKFEEHPLK--------RL-----ECAELKELPLDCN 328 (366)
Q Consensus 282 --------l~~l~~L~l~~~c~~l~~------------~~~~L~~L~l~~~~--------~~-----~~~~L~~L~l~~n 328 (366)
.+.++.|+++ +|. ++. .++ |++|++++|. +. .++.|+.|++++|
T Consensus 304 l~~~l~~~~~~L~~L~L~-~n~-l~~~~~~~l~~~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVK-SCS-FTAACCSHFSSVLAQNRF-LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHTSTTCCCCEEECT-TSC-CBGGGHHHHHHHHHHCSS-CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHhccCCccceeeEcC-CCC-CchHHHHHHHHHHhhCCC-ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 1477899999 884 322 477 9999999998 11 2779999999999
Q ss_pred CCCC
Q 038551 329 HGLE 332 (366)
Q Consensus 329 ~~~~ 332 (366)
.+.+
T Consensus 381 ~i~~ 384 (461)
T 1z7x_W 381 DVSD 384 (461)
T ss_dssp CCCH
T ss_pred CCCh
Confidence 8863
No 80
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=1.1e-16 Score=156.67 Aligned_cols=235 Identities=20% Similarity=0.118 Sum_probs=182.1
Q ss_pred CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551 12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 91 (366)
...+.+.+.++.+..+|. .+++|+.|++++|.++.+|. .+++|++|++++|.++.++. .+++|+.|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N- 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGN- 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSS-
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCC-
Confidence 467889999999999877 67999999999999998887 78999999999999998886 4789999999999
Q ss_pred CCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccccc
Q 038551 92 SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEAD 171 (366)
Q Consensus 92 ~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 171 (366)
.++.+|.. +++|++|++++|.++.+|. .+.+|+.|++++ +.+..+| ..+++|+.|++.+|.+..
T Consensus 132 ~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~-N~l~~l~----~~~~~L~~L~Ls~N~l~~----- 195 (622)
T 3g06_A 132 QLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYN-NQLTSLP----MLPSGLQELSVSDNQLAS----- 195 (622)
T ss_dssp CCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCC----CCCTTCCEEECCSSCCSC-----
T ss_pred CCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCC-CCCCCCc----ccCCCCcEEECCCCCCCC-----
Confidence 77878864 4899999999999998885 457899999999 5777777 356889999999999874
Q ss_pred ccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccC
Q 038551 172 SILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN 251 (366)
Q Consensus 172 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 251 (366)
++. .+++|+.|++++|.+..++.. + . ++..|+++++. ++..+ ..+++|+.|++++|
T Consensus 196 ---------l~~---~~~~L~~L~L~~N~l~~l~~~--~---~--~L~~L~Ls~N~-L~~lp----~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 196 ---------LPT---LPSELYKLWAYNNRLTSLPAL--P---S--GLKELIVSGNR-LTSLP----VLPSELKELMVSGN 251 (622)
T ss_dssp ---------CCC---CCTTCCEEECCSSCCSSCCCC--C---T--TCCEEECCSSC-CSCCC----CCCTTCCEEECCSS
T ss_pred ---------CCC---ccchhhEEECcCCcccccCCC--C---C--CCCEEEccCCc-cCcCC----CCCCcCcEEECCCC
Confidence 111 247899999999988876542 2 2 25556665542 22222 35689999999999
Q ss_pred ccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc
Q 038551 252 DLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK 313 (366)
Q Consensus 252 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~ 313 (366)
.++.++ ..+++|+.|+++-..+.. +. ..+..+++ |+.|+|++|+
T Consensus 252 ~L~~lp------------~~~~~L~~L~Ls~N~L~~--lp---~~l~~l~~-L~~L~L~~N~ 295 (622)
T 3g06_A 252 RLTSLP------------MLPSGLLSLSVYRNQLTR--LP---ESLIHLSS-ETTVNLEGNP 295 (622)
T ss_dssp CCSCCC------------CCCTTCCEEECCSSCCCS--CC---GGGGGSCT-TCEEECCSCC
T ss_pred CCCcCC------------cccccCcEEeCCCCCCCc--CC---HHHhhccc-cCEEEecCCC
Confidence 988776 346788888776222221 11 12445788 9999999998
No 81
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=1.9e-17 Score=147.71 Aligned_cols=181 Identities=23% Similarity=0.342 Sum_probs=106.2
Q ss_pred cccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCC
Q 038551 24 LTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNL 103 (366)
Q Consensus 24 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l 103 (366)
+.++.....+++|+.|++++|.+..++....+++|++|++++|.+..+++ +..+++|++|++++| .++.++. +..+
T Consensus 36 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l~~l 111 (291)
T 1h6t_A 36 VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS-LKDL 111 (291)
T ss_dssp TTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG-GTTC
T ss_pred cccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh-hccC
Confidence 33333344556666666666666666544556666666666666666554 556666666666666 4444443 5666
Q ss_pred CCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhh
Q 038551 104 VSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVE 183 (366)
Q Consensus 104 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (366)
++|++|++++|.++.++ .+..+++|++|++++| .+..++. +..+++|++|++.+|.+.+ ..+
T Consensus 112 ~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~-------------~~~- 173 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISD-------------IVP- 173 (291)
T ss_dssp TTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCC-------------CGG-
T ss_pred CCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCcccc-------------chh-
Confidence 66666666666666553 3556666666666663 4444422 5566666666666666653 111
Q ss_pred hhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEe
Q 038551 184 ELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELK 257 (366)
Q Consensus 184 ~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~ 257 (366)
+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+...+
T Consensus 174 -l~~l~~L~~L~L~~N~i~~l~------------------------------~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNHISDLR------------------------------ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCBCG------------------------------GGTTCTTCSEEEEEEEEEECCC
T ss_pred -hcCCCccCEEECCCCcCCCCh------------------------------hhccCCCCCEEECcCCcccCCc
Confidence 555566666666555443321 2556777888888887666543
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=1.2e-17 Score=144.66 Aligned_cols=177 Identities=16% Similarity=0.207 Sum_probs=151.2
Q ss_pred CCccEEEecCCCcccCC--CCCCCCcccEEEcccCC-ccccCCC--CCCCCccEEEccC-CCCccccchhhcCCCCCCEE
Q 038551 12 EKENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNA-IQNLTEI--PTCPRLRTLFLPS-NHLGTVSNNFFHSMASLRVL 85 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~l~~~--~~~~~L~~L~l~~-~~~~~i~~~~~~~l~~L~~L 85 (366)
...+.+++.++.+..++ .+.++++|+.|++++|. ++.++.. ..+++|++|++++ |.+..+++..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 46788899999999985 58899999999999997 9988764 7899999999998 89999988779999999999
Q ss_pred EccCCCCCCCcchhhcCCCCCc---EEEcccc-cccccccc-ccCCCCCC-EEEcccccccCccChhhhcCCcCCcEEEe
Q 038551 86 ILSYNRSLENLPLGIFNLVSLQ---HLDISWT-GITTLPIE-LKYLVNLK-CLNLEYTFRLSRIPQQVISDLKMLRALRM 159 (366)
Q Consensus 86 ~l~~~~~~~~l~~~~~~l~~L~---~L~l~~~-~~~~l~~~-l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 159 (366)
++++| .++.+|. +..+++|+ +|++++| .++.+|.. +..+++|+ +|++++ +.+..+|...+.. ++|++|++
T Consensus 111 ~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTT-CEEEEEEC
T ss_pred eCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCC-CCCCEEEc
Confidence 99999 6777887 88888888 9999999 99988865 88999999 999999 5667888765555 89999999
Q ss_pred ecCC-ccccccccccccCCchhhhhhhhcC-cccceeeeccccchhhH
Q 038551 160 FECG-FNVELEADSILFGDSEVLVEELLVL-KHLNLLTITLQSFGALQ 205 (366)
Q Consensus 160 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~ 205 (366)
.+|. +.. .....+..+ ++|+.|++++|.+..++
T Consensus 187 ~~n~~l~~-------------i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 187 NKNKYLTV-------------IDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp TTCTTCCE-------------ECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred CCCCCccc-------------CCHHHhhccccCCcEEECCCCccccCC
Confidence 9995 764 334566777 89999999988776654
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=6.6e-17 Score=141.02 Aligned_cols=178 Identities=21% Similarity=0.281 Sum_probs=142.9
Q ss_pred CcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccc
Q 038551 34 KETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISW 113 (366)
Q Consensus 34 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~ 113 (366)
...+.++++++.++.+|.. -.+.++.|++++|.+..+++..+..+++|++|++++|...+..+..+.++++|++|++++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4578899999999998865 226899999999999988887799999999999999944444455688999999999999
Q ss_pred ccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccc
Q 038551 114 TGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLN 192 (366)
Q Consensus 114 ~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 192 (366)
|.++.++.. +..+++|++|++++ +.+..++...+..+++|++|++.+|.+.. .....+..+++|+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~l~~L~ 158 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQS-------------IPAGAFDKLTNLQ 158 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------CCTTTTTTCTTCC
T ss_pred CcccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCcccEEECcCCcCCc-------------cCHHHcCcCcCCC
Confidence 999988754 78999999999999 57778887767899999999999999885 3445677888999
Q ss_pred eeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccc
Q 038551 193 LLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLE 254 (366)
Q Consensus 193 ~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 254 (366)
.|++++|.+..++. ..+..+++|++|++++|.+.
T Consensus 159 ~L~L~~N~l~~~~~----------------------------~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 159 TLSLSTNQLQSVPH----------------------------GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp EEECCSSCCSCCCT----------------------------TTTTTCTTCCEEECCSCCBC
T ss_pred EEECCCCcCCccCH----------------------------HHHhCCCCCCEEEeeCCcee
Confidence 99998887654321 11455667777777777655
No 84
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=8.4e-18 Score=164.74 Aligned_cols=295 Identities=14% Similarity=0.129 Sum_probs=154.1
Q ss_pred ccEEEecCCC-cc--cCC-CCCCCCcccEEEcccCCccccC-----CC-CCCCCccEEEccCCCCcccc----chhhcCC
Q 038551 14 ENFLVLAGVG-LT--EAP-SIGMWKETTRMSLMQNAIQNLT-----EI-PTCPRLRTLFLPSNHLGTVS----NNFFHSM 79 (366)
Q Consensus 14 ~~~~~~~~~~-~~--~~~-~~~~~~~L~~L~l~~~~~~~l~-----~~-~~~~~L~~L~l~~~~~~~i~----~~~~~~l 79 (366)
.+.+.+.++. +. .++ ...++++|+.|++++|.+.+.. .. ..+++|++|++++|.++.+. +.++..+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 5566665543 11 111 1236788888888888765432 11 46778888888888775222 2225567
Q ss_pred CCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccc---------------------------ccccccccccCCCCCCEE
Q 038551 80 ASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWT---------------------------GITTLPIELKYLVNLKCL 132 (366)
Q Consensus 80 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~---------------------------~~~~l~~~l~~l~~L~~L 132 (366)
++|+.|++++| .+..++..+.++++|++|+++.. ....+|..+..+++|++|
T Consensus 220 ~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred CCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence 88888888887 55556666677777777777642 122233333444445555
Q ss_pred EcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeecc-----------ccc
Q 038551 133 NLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITL-----------QSF 201 (366)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~ 201 (366)
++++|..........+.++++|++|++. +.+.+ .........+++|++|++.. +..
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~------------~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETR-NVIGD------------RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHH------------HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCH------------HHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 5544331111111113344445555444 22221 12222223445555555551 222
Q ss_pred hh--hHhHhhhcccCcccceeeeccccCCCCCcchhhhcc-CCcCcEEEecc----CccceEeccccccccccccCCCCC
Q 038551 202 GA--LQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFAS-LRHLRTLQLYF----NDLEELKIDAGELKRIREICGFHS 274 (366)
Q Consensus 202 ~~--~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~----~~l~~l~~~~~~~~~~~~~~~~~~ 274 (366)
.. +..+ ...+++ ++.|++ .+..++...+..++. +++|++|++++ +.++..+.+. +..... ..+++
T Consensus 366 ~~~~~~~l--~~~~~~--L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~-~~~~~~--~~~~~ 437 (592)
T 3ogk_B 366 SQRGLIAL--AQGCQE--LEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN-GVRSLL--IGCKK 437 (592)
T ss_dssp CHHHHHHH--HHHCTT--CSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH-HHHHHH--HHCTT
T ss_pred CHHHHHHH--HhhCcc--CeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH-HHHHHH--HhCCC
Confidence 21 1111 111222 222333 233334333333433 66666666652 2444322110 000001 34777
Q ss_pred cceeeee-----------------cccceeEEeeccCcccc---------ccccccceEEeecCc---------ccCCcc
Q 038551 275 LQKVFYK-----------------ILKIEARDMACTCSQYQ---------ACPRGLTKFEEHPLK---------RLECAE 319 (366)
Q Consensus 275 L~~L~l~-----------------l~~l~~L~l~~~c~~l~---------~~~~~L~~L~l~~~~---------~~~~~~ 319 (366)
|+.|+++ .+.++.|+++ +|. ++ .+++ |++|+|++|+ +..+++
T Consensus 438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~-~n~-l~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~l~~ 514 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG-YVG-ESDEGLMEFSRGCPN-LQKLEMRGCCFSERAIAAAVTKLPS 514 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC-SCC-SSHHHHHHHHTCCTT-CCEEEEESCCCBHHHHHHHHHHCSS
T ss_pred CCEEEEecCCCCccHHHHHHHHHhCccceEeecc-CCC-CCHHHHHHHHhcCcc-cCeeeccCCCCcHHHHHHHHHhcCc
Confidence 8888873 3446778888 663 22 2677 9999999987 457899
Q ss_pred cccccCCCCCCCCc
Q 038551 320 LKELPLDCNHGLEQ 333 (366)
Q Consensus 320 L~~L~l~~n~~~~~ 333 (366)
|+.|++++|.++..
T Consensus 515 L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 515 LRYLWVQGYRASMT 528 (592)
T ss_dssp CCEEEEESCBCCTT
T ss_pred cCeeECcCCcCCHH
Confidence 99999999987643
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=7.5e-18 Score=153.34 Aligned_cols=218 Identities=16% Similarity=0.174 Sum_probs=152.1
Q ss_pred ccEEEecCCCcccCCCCCCC--CcccEEEcccCCccccCCC-CCCCCccEEEccCCCCcc--ccchhhcCCCCCCEEEcc
Q 038551 14 ENFLVLAGVGLTEAPSIGMW--KETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGT--VSNNFFHSMASLRVLILS 88 (366)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~--i~~~~~~~l~~L~~L~l~ 88 (366)
-+.+++.++.+.. ..+..+ ++++.|++.+|.+...+.. ..+++|++|++++|.+.. ++. .+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECT
T ss_pred heeeccccccCCH-HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCc
Confidence 4455555544432 123333 6788888888888875544 678888888888887753 443 37788888888888
Q ss_pred CCCCCCCcchhhcCCCCCcEEEcccc-ccc--cccccccCCCCCCEEEcccccccCc--cChhhhcCCc-CCcEEEeecC
Q 038551 89 YNRSLENLPLGIFNLVSLQHLDISWT-GIT--TLPIELKYLVNLKCLNLEYTFRLSR--IPQQVISDLK-MLRALRMFEC 162 (366)
Q Consensus 89 ~~~~~~~l~~~~~~l~~L~~L~l~~~-~~~--~l~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~-~L~~L~l~~~ 162 (366)
+|......+..+..+++|++|++++| .++ .++..+..+++|++|++++|..++. ++.. +..++ +|++|++.+|
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGY 205 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSC
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCC
Confidence 88433356677778888888888888 676 3666678888888888888634443 3333 67788 8888888888
Q ss_pred --CccccccccccccCCchhhhhhhhcCcccceeeeccccc-h--hhHhHhhhcccCcccceeeeccccCCCCCcchhhh
Q 038551 163 --GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSF-G--ALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAF 237 (366)
Q Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~--~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l 237 (366)
.+++ ...+..+..+++|+.|++++|.. . .++. +..+++ ++.|++..+..+.+..+..+
T Consensus 206 ~~~~~~------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~---l~~l~~--L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 206 RKNLQK------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE---FFQLNY--LQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp GGGSCH------------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGG---GGGCTT--CCEEECTTCTTCCGGGGGGG
T ss_pred cccCCH------------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH---HhCCCC--CCEeeCCCCCCCCHHHHHHH
Confidence 4442 25556667788888888888873 2 2333 334433 66688877776666665567
Q ss_pred ccCCcCcEEEeccC
Q 038551 238 ASLRHLRTLQLYFN 251 (366)
Q Consensus 238 ~~~~~L~~L~l~~~ 251 (366)
..+++|++|++++|
T Consensus 269 ~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 269 GEIPTLKTLQVFGI 282 (336)
T ss_dssp GGCTTCCEEECTTS
T ss_pred hcCCCCCEEeccCc
Confidence 78888899988888
No 86
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=2.5e-17 Score=161.41 Aligned_cols=294 Identities=13% Similarity=0.084 Sum_probs=197.5
Q ss_pred CCccEEEecCCCcccC--CCCCC-CCc-ccEEEcccCC-ccc--cCCC-CCCCCccEEEccCCCCcccc----chhhcCC
Q 038551 12 EKENFLVLAGVGLTEA--PSIGM-WKE-TTRMSLMQNA-IQN--LTEI-PTCPRLRTLFLPSNHLGTVS----NNFFHSM 79 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~-~~~-L~~L~l~~~~-~~~--l~~~-~~~~~L~~L~l~~~~~~~i~----~~~~~~l 79 (366)
...+.+++.++.+.+. ..++. +++ |+.|++.+|. +.. ++.. ..+++|++|++++|.+.... ...+..+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 3456667766655433 22333 345 9999999886 322 3222 57899999999999775432 2235679
Q ss_pred CCCCEEEccCCCCC----CCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccc----------------
Q 038551 80 ASLRVLILSYNRSL----ENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFR---------------- 139 (366)
Q Consensus 80 ~~L~~L~l~~~~~~----~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~---------------- 139 (366)
++|+.|++++|... ..++..+.++++|++|++++|.+..++..+..+++|++|+++....
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 99999999999433 1345556789999999999999888887777788888888764211
Q ss_pred ----------cCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccch-hhHhHh
Q 038551 140 ----------LSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG-ALQRLL 208 (366)
Q Consensus 140 ----------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~l~ 208 (366)
...++.. +..+++|++|++.+|.+.+ ......+..+++|+.|++..+... +++.+.
T Consensus 272 L~~L~l~~~~~~~l~~~-~~~~~~L~~L~Ls~~~l~~------------~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~ 338 (592)
T 3ogk_B 272 LCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYALLET------------EDHCTLIQKCPNLEVLETRNVIGDRGLEVLA 338 (592)
T ss_dssp CCEEEETTCCTTTGGGG-GGGGGGCCEEEETTCCCCH------------HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred ccccCccccchhHHHHH-HhhcCCCcEEecCCCcCCH------------HHHHHHHHhCcCCCEEeccCccCHHHHHHHH
Confidence 1222332 5567788888888887654 233345677888999888732211 233321
Q ss_pred hhcccCcccceeeeccc----------cCCCCCcchhh-hccCCcCcEEEeccCccceEeccccccccccccCCCCCcce
Q 038551 209 SYCRLGSISTQCLCLRH----------LNNSNSLSVFA-FASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQK 277 (366)
Q Consensus 209 ~~~~l~~l~l~~L~~~~----------~~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~ 277 (366)
..+++ ++.|++.+ +..++...+.. ...+++|++|+++.+.++.......+ ..+++|+.
T Consensus 339 --~~~~~--L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~-------~~~~~L~~ 407 (592)
T 3ogk_B 339 --QYCKQ--LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG-------TYLKNLCD 407 (592)
T ss_dssp --HHCTT--CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH-------HHCCSCCE
T ss_pred --HhCCC--CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH-------hhCCCCcE
Confidence 22333 55577764 66666555433 34689999999977677643322211 33778888
Q ss_pred eeee-----------------------cccceeEEeeccCcc-ccc---------cccccceEEeecCc---------cc
Q 038551 278 VFYK-----------------------ILKIEARDMACTCSQ-YQA---------CPRGLTKFEEHPLK---------RL 315 (366)
Q Consensus 278 L~l~-----------------------l~~l~~L~l~~~c~~-l~~---------~~~~L~~L~l~~~~---------~~ 315 (366)
|++. +++++.|+++ .|.+ +++ +|+ |++|++++|. +.
T Consensus 408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~-~~~~~l~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~ 485 (592)
T 3ogk_B 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY-LRQGGLTDLGLSYIGQYSPN-VRWMLLGYVGESDEGLMEFSR 485 (592)
T ss_dssp EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE-CCGGGCCHHHHHHHHHSCTT-CCEEEECSCCSSHHHHHHHHT
T ss_pred EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe-cCCCCccHHHHHHHHHhCcc-ceEeeccCCCCCHHHHHHHHh
Confidence 8883 4556889998 7764 322 678 9999999987 57
Q ss_pred CCcccccccCCCCCCC
Q 038551 316 ECAELKELPLDCNHGL 331 (366)
Q Consensus 316 ~~~~L~~L~l~~n~~~ 331 (366)
+|++|+.|++++|.++
T Consensus 486 ~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 486 GCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCTTCCEEEEESCCCB
T ss_pred cCcccCeeeccCCCCc
Confidence 8999999999999864
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=6.2e-18 Score=153.90 Aligned_cols=219 Identities=16% Similarity=0.070 Sum_probs=162.6
Q ss_pred cccEEEcccCCccccCCC-CCC--CCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCC-cchhhcCCCCCcEEE
Q 038551 35 ETTRMSLMQNAIQNLTEI-PTC--PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLEN-LPLGIFNLVSLQHLD 110 (366)
Q Consensus 35 ~L~~L~l~~~~~~~l~~~-~~~--~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~ 110 (366)
.++.++++++.+.. .. ..+ ++++.+++.+|.+...++. +..+++|++|++++|..... ++..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLHP--DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCCH--HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCCH--HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 47889998887763 11 333 7899999999988776666 55789999999999943323 777788999999999
Q ss_pred ccccccc-cccccccCCCCCCEEEcccccccCc--cChhhhcCCcCCcEEEeecC-CccccccccccccCCchhhhhhhh
Q 038551 111 ISWTGIT-TLPIELKYLVNLKCLNLEYTFRLSR--IPQQVISDLKMLRALRMFEC-GFNVELEADSILFGDSEVLVEELL 186 (366)
Q Consensus 111 l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 186 (366)
+++|.++ ..+..+..+++|++|++++|..++. ++.. +.++++|++|++.+| .+++ ......+.
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~------------~~~~~~~~ 191 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE------------KHVQVAVA 191 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH------------HHHHHHHH
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh------------HHHHHHHH
Confidence 9999887 5666788899999999999755553 4443 778999999999999 7774 23566778
Q ss_pred cCc-ccceeeeccccc----hhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccC-ccceEeccc
Q 038551 187 VLK-HLNLLTITLQSF----GALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN-DLEELKIDA 260 (366)
Q Consensus 187 ~l~-~L~~L~l~~~~~----~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~l~~~~ 260 (366)
.++ +|+.|++++|.. ..++.. +.++++ ++.|++..+..++...+..+..+++|++|++++| .+.......
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~--~~~~~~--L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTL--VRRCPN--LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHH--HHHCTT--CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHH--HhhCCC--CCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 889 999999998853 334332 223343 6668888876666666667888999999999999 443221111
Q ss_pred cccccccccCCCCCcceeeee
Q 038551 261 GELKRIREICGFHSLQKVFYK 281 (366)
Q Consensus 261 ~~~~~~~~~~~~~~L~~L~l~ 281 (366)
. ..+++|+.|+++
T Consensus 268 l--------~~~~~L~~L~l~ 280 (336)
T 2ast_B 268 L--------GEIPTLKTLQVF 280 (336)
T ss_dssp G--------GGCTTCCEEECT
T ss_pred H--------hcCCCCCEEecc
Confidence 1 558999999886
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=1.7e-17 Score=149.56 Aligned_cols=218 Identities=15% Similarity=0.130 Sum_probs=156.7
Q ss_pred ccEEEcccCCccc--cCCC-C-------CCCCccEEEccCCCCc-cccchhh-cCCCCCCEEEccCCCCCCCcchhhcCC
Q 038551 36 TTRMSLMQNAIQN--LTEI-P-------TCPRLRTLFLPSNHLG-TVSNNFF-HSMASLRVLILSYNRSLENLPLGIFNL 103 (366)
Q Consensus 36 L~~L~l~~~~~~~--l~~~-~-------~~~~L~~L~l~~~~~~-~i~~~~~-~~l~~L~~L~l~~~~~~~~l~~~~~~l 103 (366)
++.|++++|.+.. ++.. . .+++|++|++++|.+. .+|..++ ..+++|++|++++| .++.+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHH
Confidence 8889999988865 3332 2 6889999999999986 5666533 78999999999999 566557777766
Q ss_pred -----CCCcEEEcccccccccc-ccccCCCCCCEEEcccccccCc--cChh-hhcCCcCCcEEEeecCCccccccccccc
Q 038551 104 -----VSLQHLDISWTGITTLP-IELKYLVNLKCLNLEYTFRLSR--IPQQ-VISDLKMLRALRMFECGFNVELEADSIL 174 (366)
Q Consensus 104 -----~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~--~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 174 (366)
++|++|++++|.++.++ ..++.+++|++|++++|...+. ++.. .+..+++|++|++.+|.+..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-------- 215 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-------- 215 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC--------
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc--------
Confidence 89999999999998777 5688999999999999655443 2222 12788999999999999874
Q ss_pred cCCchhhh-hhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCcc
Q 038551 175 FGDSEVLV-EELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDL 253 (366)
Q Consensus 175 ~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 253 (366)
....+ ..+..+++|+.|++++|.+.+.........+.+ ++.|+++++.- +..+ ..+. ++|++|++++|.+
T Consensus 216 ---~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~--L~~L~Ls~N~l-~~ip-~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 216 ---PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ--LNSLNLSFTGL-KQVP-KGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp ---HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT--CCEEECTTSCC-SSCC-SSCC--SEEEEEECCSSCC
T ss_pred ---hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC--CCEEECCCCcc-Chhh-hhcc--CCceEEECCCCCC
Confidence 11222 334577899999999998887543222333444 55566655432 2221 1122 7999999999988
Q ss_pred ceEeccccccccccccCCCCCcceeeee
Q 038551 254 EELKIDAGELKRIREICGFHSLQKVFYK 281 (366)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 281 (366)
+.++. . ..+++|+.|+++
T Consensus 287 ~~~p~-~---------~~l~~L~~L~L~ 304 (312)
T 1wwl_A 287 DRNPS-P---------DELPQVGNLSLK 304 (312)
T ss_dssp CSCCC-T---------TTSCEEEEEECT
T ss_pred CCChh-H---------hhCCCCCEEecc
Confidence 87743 2 568888888875
No 89
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=1.3e-16 Score=135.10 Aligned_cols=165 Identities=24% Similarity=0.325 Sum_probs=138.1
Q ss_pred cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551 15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS 92 (366)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 92 (366)
..+.+.++++..+|.- -.++++.|++++|.++.++.. ..+++|++|++++|.+..+++.+|..+++|++|++++| .
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-Q 87 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-c
Confidence 4678888888888632 357999999999999997764 78999999999999999998887889999999999999 5
Q ss_pred CCCcch-hhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccc
Q 038551 93 LENLPL-GIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEA 170 (366)
Q Consensus 93 ~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 170 (366)
++.++. .+.++++|++|++++|.++.++.. +..+++|++|++++ +.+..++...+..+++|++|++.+|.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCeec----
Confidence 666654 468999999999999999988765 78999999999999 46667777668889999999999998764
Q ss_pred cccccCCchhhhhhhhcCcccceeeeccccch
Q 038551 171 DSILFGDSEVLVEELLVLKHLNLLTITLQSFG 202 (366)
Q Consensus 171 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 202 (366)
.++.|+.|++..|...
T Consensus 163 ----------------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 163 ----------------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp ----------------CTTTTHHHHHHHHHCT
T ss_pred ----------------CCCCHHHHHHHHHhCC
Confidence 3567777777776655
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=1.5e-16 Score=141.92 Aligned_cols=169 Identities=22% Similarity=0.313 Sum_probs=148.4
Q ss_pred CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551 13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS 92 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 92 (366)
..+.+++.++++.+++.+..+++|+.|++++|.++.++....+++|++|++++|.+..++. +..+++|++|++++| .
T Consensus 47 ~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~ 123 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN-G 123 (291)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS-C
T ss_pred cccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCC-c
Confidence 4577888999999999899999999999999999998777899999999999999988765 889999999999999 6
Q ss_pred CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccc
Q 038551 93 LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADS 172 (366)
Q Consensus 93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 172 (366)
++.++ .+..+++|++|++++|.++.+ ..+..+++|++|++++| .+..++. +..+++|++|++.+|.+.+
T Consensus 124 i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~~------ 192 (291)
T 1h6t_A 124 ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD------ 192 (291)
T ss_dssp CCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB------
T ss_pred CCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCCC------
Confidence 67664 588999999999999999988 46899999999999995 6666655 8899999999999999875
Q ss_pred cccCCchhhhhhhhcCcccceeeeccccchhh
Q 038551 173 ILFGDSEVLVEELLVLKHLNLLTITLQSFGAL 204 (366)
Q Consensus 173 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 204 (366)
...+..+++|+.|++++|.+...
T Consensus 193 ---------l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 193 ---------LRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ---------CGGGTTCTTCSEEEEEEEEEECC
T ss_pred ---------ChhhccCCCCCEEECcCCcccCC
Confidence 23478899999999999987653
No 91
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=2.7e-16 Score=135.18 Aligned_cols=148 Identities=26% Similarity=0.313 Sum_probs=127.0
Q ss_pred EEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCC
Q 038551 16 FLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL 93 (366)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~ 93 (366)
.+++.++++..+|.-. .++|+.|++++|.++.+++. ..+++|++|++++|.++.+++.+|..+++|++|++++| .+
T Consensus 23 ~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l 100 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QL 100 (229)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cC
Confidence 5788888899987532 38999999999999997543 78899999999999999998887899999999999999 66
Q ss_pred CCcch-hhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551 94 ENLPL-GIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 94 ~~l~~-~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
+.++. .+..+++|++|++++|.++.+|..+..+++|++|++++ +.+..++...+..+++|+.|++.+|.+..
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 66654 46889999999999999999998899999999999999 57777776668889999999999998763
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=9.7e-17 Score=134.67 Aligned_cols=154 Identities=19% Similarity=0.226 Sum_probs=120.6
Q ss_pred CCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 038551 31 GMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLD 110 (366)
Q Consensus 31 ~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 110 (366)
+.+++|+.|++++|.+..++....+++|++|++++|.+..++. +..+++|++|++++|......+..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4567889999999988888755788899999999987776653 77889999999999844334667788889999999
Q ss_pred cccccccc-ccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCc
Q 038551 111 ISWTGITT-LPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLK 189 (366)
Q Consensus 111 l~~~~~~~-l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 189 (366)
+++|.++. .+..+..+++|++|++++|..++.++. +..+++|++|++.+|.+.+ ...+..++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~---------------~~~l~~l~ 181 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD---------------YRGIEDFP 181 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC---------------CTTGGGCS
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC---------------hHHhccCC
Confidence 99998874 566688889999999998665777763 7888899999999988874 22677788
Q ss_pred ccceeeeccccchh
Q 038551 190 HLNLLTITLQSFGA 203 (366)
Q Consensus 190 ~L~~L~l~~~~~~~ 203 (366)
+|+.|++++|.+..
T Consensus 182 ~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 182 KLNQLYAFSQTIGG 195 (197)
T ss_dssp SCCEEEECBC----
T ss_pred CCCEEEeeCcccCC
Confidence 89999998887653
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=1.1e-16 Score=156.34 Aligned_cols=161 Identities=22% Similarity=0.332 Sum_probs=98.9
Q ss_pred CCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhc
Q 038551 22 VGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF 101 (366)
Q Consensus 22 ~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~ 101 (366)
..+.++.....+++|+.|++++|.+..++....+++|+.|++++|.+..+++ +..+++|+.|++++| .+..+| .+.
T Consensus 31 ~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~ 106 (605)
T 1m9s_A 31 KSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLK 106 (605)
T ss_dssp SCTTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TST
T ss_pred CCcccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhc
Confidence 3344444445566666777777766666555666677777777776666655 566677777777776 445544 366
Q ss_pred CCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhh
Q 038551 102 NLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVL 181 (366)
Q Consensus 102 ~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
.+++|++|++++|.+..++ .+..+++|+.|++++| .+..++ . +..+++|+.|++.+|.+.+ ..
T Consensus 107 ~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~-~-l~~l~~L~~L~Ls~N~l~~-------------~~ 169 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDIT-V-LSRLTKLDTLSLEDNQISD-------------IV 169 (605)
T ss_dssp TCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCG-G-GGSCTTCSEEECCSSCCCC-------------CG
T ss_pred cCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCch-h-hcccCCCCEEECcCCcCCC-------------ch
Confidence 6667777777777666654 3566667777777663 444442 2 6666677777777666654 11
Q ss_pred hhhhhcCcccceeeeccccchhhH
Q 038551 182 VEELLVLKHLNLLTITLQSFGALQ 205 (366)
Q Consensus 182 ~~~l~~l~~L~~L~l~~~~~~~~~ 205 (366)
+ +..+++|+.|++++|.+..++
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBCG
T ss_pred h--hccCCCCCEEECcCCCCCCCh
Confidence 1 556666666666666555443
No 94
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=4.1e-16 Score=143.40 Aligned_cols=172 Identities=25% Similarity=0.280 Sum_probs=143.9
Q ss_pred cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--C-CCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551 15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--P-TCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91 (366)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 91 (366)
..+.+.++++..+|... .+.++.|++++|.++.++.. . .+++|++|++++|.+..+++..|..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N- 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN- 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-
Confidence 47899999999997532 36799999999999998765 4 8999999999999999998877999999999999999
Q ss_pred CCCCcc-hhhcCCCCCcEEEcccccccccc-ccccCCCCCCEEEcccccccCccChhhh---cCCcCCcEEEeecCCccc
Q 038551 92 SLENLP-LGIFNLVSLQHLDISWTGITTLP-IELKYLVNLKCLNLEYTFRLSRIPQQVI---SDLKMLRALRMFECGFNV 166 (366)
Q Consensus 92 ~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 166 (366)
.++.++ ..+.++++|++|++++|.++.++ ..+..+++|++|++++ +.+..+|...+ ..+++|+.|++.+|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 566665 45889999999999999999774 5689999999999999 67888887755 578999999999999985
Q ss_pred cccccccccCCchhhhhhhhcCcc--cceeeeccccch
Q 038551 167 ELEADSILFGDSEVLVEELLVLKH--LNLLTITLQSFG 202 (366)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 202 (366)
.....+..++. ++.|++.+|...
T Consensus 178 -------------l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 -------------LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -------------CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -------------cCHHHhhhccHhhcceEEecCCCcc
Confidence 44456666766 478999988765
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=4.6e-16 Score=130.49 Aligned_cols=150 Identities=21% Similarity=0.284 Sum_probs=127.2
Q ss_pred CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551 13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS 92 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 92 (366)
..+.+.+.++++.++|.+..+++|+.|++++|.++.++....+++|++|++++|.+.......+..+++|++|++++|..
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence 56788899999999999999999999999999888877668899999999999999763333388999999999999954
Q ss_pred CCCcchhhcCCCCCcEEEccccc-cccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551 93 LENLPLGIFNLVSLQHLDISWTG-ITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 93 ~~~l~~~~~~l~~L~~L~l~~~~-~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
....+..+..+++|++|++++|. ++.+| .+..+++|++|++++| .+..++ . +..+++|++|++.+|.+.+
T Consensus 125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~-l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 125 DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-G-IEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp BGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-T-GGGCSSCCEEEECBC----
T ss_pred CcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-H-hccCCCCCEEEeeCcccCC
Confidence 44577889999999999999997 88887 6899999999999994 666676 3 8899999999999999864
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=7.4e-16 Score=138.65 Aligned_cols=228 Identities=16% Similarity=0.079 Sum_probs=136.9
Q ss_pred CCccEEEccCCCCcc-----ccchhhcCCCCCCEEEccCCCCCCCcchhh--cCCCCCcEEEccccccccc-c----ccc
Q 038551 56 PRLRTLFLPSNHLGT-----VSNNFFHSMASLRVLILSYNRSLENLPLGI--FNLVSLQHLDISWTGITTL-P----IEL 123 (366)
Q Consensus 56 ~~L~~L~l~~~~~~~-----i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~l-~----~~l 123 (366)
..++.+.+.++.++. +.. +..+++|++|++++|...+..|..+ ..+++|++|++++|.++.. + ..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALR--VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHH--HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEEEEeCCcCCHHHHHHHHH--hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 356777777776642 111 2235668889998885555666666 7888889999988887742 2 224
Q ss_pred cCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhh--hhhhcCcccceeeeccccc
Q 038551 124 KYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLV--EELLVLKHLNLLTITLQSF 201 (366)
Q Consensus 124 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~ 201 (366)
..+++|++|++++| .+..++...+.++++|++|++++|.+.+. .... ..+..+++|+.|++++|.+
T Consensus 142 ~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~~~~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 142 WLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGE-----------RGLMAALCPHKFPAIQNLALRNTGM 209 (310)
T ss_dssp TBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHH-----------HHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred hhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccc-----------hhhhHHHhhhcCCCCCEEECCCCCC
Confidence 57888999999884 45555544477888899999988887641 1122 2235678888888888888
Q ss_pred hhhHhHhh--hcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceee
Q 038551 202 GALQRLLS--YCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVF 279 (366)
Q Consensus 202 ~~~~~l~~--~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~ 279 (366)
..++.... +..+.+|....|.-+.+....+..+..+..+++|++|++++|.++.++.. -+++|+.|+
T Consensus 210 ~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~-----------~~~~L~~L~ 278 (310)
T 4glp_A 210 ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG-----------LPAKLRVLD 278 (310)
T ss_dssp CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC-----------CCSCCSCEE
T ss_pred CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh-----------hcCCCCEEE
Confidence 76554211 12333322222332333333333322233346888888888877755421 124555554
Q ss_pred eecccceeEEeeccCccccccccccceEEeecCcccCCcccccccCCCCCCC
Q 038551 280 YKILKIEARDMACTCSQYQACPRGLTKFEEHPLKRLECAELKELPLDCNHGL 331 (366)
Q Consensus 280 l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~~~~~~~L~~L~l~~n~~~ 331 (366)
++ ++ .++.+|. ...+++|+.|++++|++.
T Consensus 279 Ls-----------~N-~l~~~~~-----------~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 279 LS-----------SN-RLNRAPQ-----------PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CC-----------SC-CCCSCCC-----------TTSCCCCSCEECSSTTTS
T ss_pred CC-----------CC-cCCCCch-----------hhhCCCccEEECcCCCCC
Confidence 42 22 2222222 356677888888888774
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.67 E-value=9.1e-16 Score=131.02 Aligned_cols=148 Identities=28% Similarity=0.342 Sum_probs=121.8
Q ss_pred cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551 15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS 92 (366)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 92 (366)
..+++.++++..+|.-. .++++.|++++|.++.++.. ..+++|++|++++|.+..+.+..|..+++|++|++++| .
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-K 91 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-C
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-c
Confidence 56788888999887532 27899999999999987754 78889999999999998886666889999999999999 6
Q ss_pred CCCcchh-hcCCCCCcEEEcccccccccc-ccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551 93 LENLPLG-IFNLVSLQHLDISWTGITTLP-IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN 165 (366)
Q Consensus 93 ~~~l~~~-~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 165 (366)
++.+|.. +.++++|++|++++|.++.++ ..+..+++|++|++++ +.+..++...+..+++|+.|++.+|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6677654 678899999999999988774 4588899999999998 5666776655888889999999998875
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=3.9e-17 Score=160.00 Aligned_cols=300 Identities=18% Similarity=0.145 Sum_probs=152.4
Q ss_pred CCccEEEecCCCcccC--CCCC-CCCcccEEEcccC-Cccc--cCCC-CCCCCccEEEccCCCCccccchh----hcCCC
Q 038551 12 EKENFLVLAGVGLTEA--PSIG-MWKETTRMSLMQN-AIQN--LTEI-PTCPRLRTLFLPSNHLGTVSNNF----FHSMA 80 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~~-~~~~L~~L~l~~~-~~~~--l~~~-~~~~~L~~L~l~~~~~~~i~~~~----~~~l~ 80 (366)
...+.+.+.++.+.+. ..+. .+++|+.|++.+| .+.. ++.. ..+++|++|++++|.++...... ...++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 3556667766655443 2232 4677888888777 4443 3333 46777777777777654322211 23566
Q ss_pred CCCEEEccCCC-CCC--CcchhhcCCCCCcEEEcccc-ccccccccccCCCCCCEEEcccccc-----------------
Q 038551 81 SLRVLILSYNR-SLE--NLPLGIFNLVSLQHLDISWT-GITTLPIELKYLVNLKCLNLEYTFR----------------- 139 (366)
Q Consensus 81 ~L~~L~l~~~~-~~~--~l~~~~~~l~~L~~L~l~~~-~~~~l~~~l~~l~~L~~L~l~~~~~----------------- 139 (366)
+|+.|++++|. .++ .++..+..+++|++|++++| .++.++..+..+++|++|+++.+..
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 77777777763 011 11222244577777777766 3334444444445555554332210
Q ss_pred --------c-----CccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccch-hhH
Q 038551 140 --------L-----SRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG-ALQ 205 (366)
Q Consensus 140 --------~-----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~ 205 (366)
. ..++.. +..+++|++|++.+|.+.+ ......+..+++|+.|++.++... +++
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~~------------~~l~~~~~~~~~L~~L~l~~~~~~~~l~ 331 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAV-YSVCSRLTTLNLSYATVQS------------YDLVKLLCQCPKLQRLWVLDYIEDAGLE 331 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGG-HHHHTTCCEEECTTCCCCH------------HHHHHHHTTCTTCCEEEEEGGGHHHHHH
T ss_pred CCcccccCCcccchhhHHHH-HHhhCCCCEEEccCCCCCH------------HHHHHHHhcCCCcCEEeCcCccCHHHHH
Confidence 0 001110 1234455555555555432 112222334444444444433110 111
Q ss_pred hHhh-hcccCcc-----------------------------cceeeeccccCCCCCcchhhhc-cCCcCcEEEec-----
Q 038551 206 RLLS-YCRLGSI-----------------------------STQCLCLRHLNNSNSLSVFAFA-SLRHLRTLQLY----- 249 (366)
Q Consensus 206 ~l~~-~~~l~~l-----------------------------~l~~L~~~~~~~~~~~~~~~l~-~~~~L~~L~l~----- 249 (366)
.+.. +++++.| .++.|.+ .+..++...+..+. .+++|++|+++
T Consensus 332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~ 410 (594)
T 2p1m_B 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPK 410 (594)
T ss_dssp HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTT
T ss_pred HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCC
Confidence 1110 1111110 1222311 23333333333333 46777777777
Q ss_pred cC-ccceEeccccccccccccCCCCCcceeeee--------------cccceeEEeeccCcccc---------ccccccc
Q 038551 250 FN-DLEELKIDAGELKRIREICGFHSLQKVFYK--------------ILKIEARDMACTCSQYQ---------ACPRGLT 305 (366)
Q Consensus 250 ~~-~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~--------------l~~l~~L~l~~~c~~l~---------~~~~~L~ 305 (366)
+| .++..+.+.. ....+ ..+++|+.|+++ .+.++.|+++ +|. ++ .+|+ |+
T Consensus 411 ~~~~l~~~~~~~~-~~~l~--~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~-~~~-i~~~~~~~l~~~~~~-L~ 484 (594)
T 2p1m_B 411 APDYLTLEPLDIG-FGAIV--EHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVA-FAG-DSDLGMHHVLSGCDS-LR 484 (594)
T ss_dssp CCCTTTCCCTHHH-HHHHH--HHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEE-SCC-SSHHHHHHHHHHCTT-CC
T ss_pred CcccccCCchhhH-HHHHH--hhCCCccEEeecCcccHHHHHHHHHhchhccEeecc-CCC-CcHHHHHHHHhcCCC-cC
Confidence 23 4443321100 00011 456788888886 4557889998 775 32 2688 99
Q ss_pred eEEeecCc---------ccCCcccccccCCCCCCC
Q 038551 306 KFEEHPLK---------RLECAELKELPLDCNHGL 331 (366)
Q Consensus 306 ~L~l~~~~---------~~~~~~L~~L~l~~n~~~ 331 (366)
+|+|++|+ +..|++|+.|++++|+.+
T Consensus 485 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 485 KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred EEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 99999998 456899999999999874
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=2e-16 Score=145.54 Aligned_cols=174 Identities=16% Similarity=0.202 Sum_probs=81.6
Q ss_pred EecCCCcccC-CCCCCC-CcccEEEcccCCccccCC-----C-CCCC-CccEEEccCCCCccccchhhcCC-----CCCC
Q 038551 18 VLAGVGLTEA-PSIGMW-KETTRMSLMQNAIQNLTE-----I-PTCP-RLRTLFLPSNHLGTVSNNFFHSM-----ASLR 83 (366)
Q Consensus 18 ~~~~~~~~~~-~~~~~~-~~L~~L~l~~~~~~~l~~-----~-~~~~-~L~~L~l~~~~~~~i~~~~~~~l-----~~L~ 83 (366)
.+..+++.+. |.+... ++|+.|++++|.+...+. . ..++ +|++|++++|.++......+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 3444444433 333222 336666666666665442 1 3444 56666666666654433223332 6666
Q ss_pred EEEccCCCCCCC-cchh----hcCC-CCCcEEEcccccccccccc-----ccC-CCCCCEEEcccccccCc----cChhh
Q 038551 84 VLILSYNRSLEN-LPLG----IFNL-VSLQHLDISWTGITTLPIE-----LKY-LVNLKCLNLEYTFRLSR----IPQQV 147 (366)
Q Consensus 84 ~L~l~~~~~~~~-l~~~----~~~l-~~L~~L~l~~~~~~~l~~~-----l~~-l~~L~~L~l~~~~~~~~----~~~~~ 147 (366)
+|++++| .++. .+.. +..+ ++|++|++++|.++..+.. +.. .++|++|++++|..... ++..
T Consensus 84 ~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~- 161 (362)
T 3goz_A 84 SLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI- 161 (362)
T ss_dssp EEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-
T ss_pred EEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-
Confidence 6666666 3332 2221 2333 5666666666665543321 223 24666666666322211 1111
Q ss_pred hcCCc-CCcEEEeecCCccccccccccccCCchhhhhhhhcC-cccceeeeccccch
Q 038551 148 ISDLK-MLRALRMFECGFNVELEADSILFGDSEVLVEELLVL-KHLNLLTITLQSFG 202 (366)
Q Consensus 148 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~ 202 (366)
+...+ +|++|++.+|.+.+. ....+...+... ++|+.|++++|.+.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~---------~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASK---------NCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGS---------CHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HhcCCccccEeeecCCCCchh---------hHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 23333 566666666655531 011222333444 35666666655544
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=1.2e-15 Score=130.31 Aligned_cols=149 Identities=20% Similarity=0.253 Sum_probs=119.4
Q ss_pred cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC---CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551 15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI---PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91 (366)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 91 (366)
..+++.++++..+|... .+.++.|++++|.++.++.. ..+++|++|++++|.+..+++..|..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N- 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN- 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-
Confidence 37788888888886422 35678999999999987432 68889999999999998888877889999999999999
Q ss_pred CCCCcc-hhhcCCCCCcEEEccccccccc-cccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551 92 SLENLP-LGIFNLVSLQHLDISWTGITTL-PIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 92 ~~~~l~-~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
.++.++ ..+.++++|++|++++|.++.+ |..+..+++|++|++++ +.+..++...+..+++|+.|++.+|.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 455544 5588899999999999998876 45688899999999998 45566644448888999999999988764
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=2.6e-16 Score=138.19 Aligned_cols=163 Identities=21% Similarity=0.196 Sum_probs=129.7
Q ss_pred EecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc
Q 038551 18 VLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP 97 (366)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~ 97 (366)
.+.++++.+++.+..+++|+.|++++|.++.++....+++|+.|++++|.+..+++ +..+++|++|++++| .++.+|
T Consensus 25 ~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~ 101 (263)
T 1xeu_A 25 NLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLN 101 (263)
T ss_dssp HHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCT
T ss_pred HhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcC
Confidence 34566677777777788899999999988888755788889999999998888876 778899999999998 667666
Q ss_pred hhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCC
Q 038551 98 LGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGD 177 (366)
Q Consensus 98 ~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 177 (366)
.. .. ++|++|++++|.++.++ .+..+++|++|++++ +.+..++. +..+++|++|++.+|.+.+
T Consensus 102 ~~-~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~~----------- 164 (263)
T 1xeu_A 102 GI-PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITN----------- 164 (263)
T ss_dssp TC-CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCCB-----------
T ss_pred cc-cc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCcc-----------
Confidence 53 33 88999999999888776 478888999999988 45666653 7888899999999988875
Q ss_pred chhhhhhhhcCcccceeeeccccchhh
Q 038551 178 SEVLVEELLVLKHLNLLTITLQSFGAL 204 (366)
Q Consensus 178 ~~~~~~~l~~l~~L~~L~l~~~~~~~~ 204 (366)
. ..+..+++|+.|++++|.+...
T Consensus 165 --~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 --T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred --h--HHhccCCCCCEEeCCCCcccCC
Confidence 2 5677788888899888877654
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=1.1e-15 Score=130.41 Aligned_cols=150 Identities=19% Similarity=0.258 Sum_probs=129.2
Q ss_pred cEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEccccc
Q 038551 37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHLDISWTG 115 (366)
Q Consensus 37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~ 115 (366)
+.+++.++.++.+|.. -.++++.|++++|.+..+++..|..+++|++|++++| .++.+ |..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc
Confidence 5788999999998865 2268999999999999998877999999999999999 55544 7789999999999999999
Q ss_pred ccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccccee
Q 038551 116 ITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLL 194 (366)
Q Consensus 116 ~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 194 (366)
++.+|.. +..+++|++|++++ +.+..++...+..+++|++|++.+|.+.. .....+..+++|+.|
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQT-------------IAKGTFSPLRAIQTM 157 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC-------------CCTTTTTTCTTCCEE
T ss_pred CCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCCE-------------ECHHHHhCCCCCCEE
Confidence 9999876 68999999999999 56666665558899999999999999986 444567789999999
Q ss_pred eeccccch
Q 038551 195 TITLQSFG 202 (366)
Q Consensus 195 ~l~~~~~~ 202 (366)
++++|...
T Consensus 158 ~L~~N~~~ 165 (220)
T 2v9t_B 158 HLAQNPFI 165 (220)
T ss_dssp ECCSSCEE
T ss_pred EeCCCCcC
Confidence 99999765
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=3.8e-17 Score=151.72 Aligned_cols=221 Identities=18% Similarity=0.176 Sum_probs=147.2
Q ss_pred cCCCcccC-CCCCCCCcccEEEcccCCccc-----cCCC-CCCCCccEEEccCCCCcc----ccchh------hcCCCCC
Q 038551 20 AGVGLTEA-PSIGMWKETTRMSLMQNAIQN-----LTEI-PTCPRLRTLFLPSNHLGT----VSNNF------FHSMASL 82 (366)
Q Consensus 20 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~----i~~~~------~~~l~~L 82 (366)
...++..+ ..+..+++|+.|++++|.+.. ++.. ..+++|++|++++|.+.. +|..+ +..+++|
T Consensus 17 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 17 TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp CSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 33344444 345667899999999998876 2222 678999999999975543 34432 3678999
Q ss_pred CEEEccCCCCCCC-----cchhhcCCCCCcEEEcccccccc-----ccccccCC---------CCCCEEEccccccc-Cc
Q 038551 83 RVLILSYNRSLEN-----LPLGIFNLVSLQHLDISWTGITT-----LPIELKYL---------VNLKCLNLEYTFRL-SR 142 (366)
Q Consensus 83 ~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~-----l~~~l~~l---------~~L~~L~l~~~~~~-~~ 142 (366)
++|++++| .++. +|..+..+++|++|++++|.++. ++..+..+ ++|++|++++|... ..
T Consensus 97 ~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 97 HTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred cEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 99999999 4443 67778889999999999998862 33334444 89999999996443 23
Q ss_pred cCh--hhhcCCcCCcEEEeecCCccccccccccccCCchhhhh-hhhcCcccceeeeccccchh-----hHhHhhhcccC
Q 038551 143 IPQ--QVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVE-ELLVLKHLNLLTITLQSFGA-----LQRLLSYCRLG 214 (366)
Q Consensus 143 ~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~-----~~~l~~~~~l~ 214 (366)
++. ..+..+++|++|++.+|.+... +...... .+..+++|+.|++++|.+.. ++. .+..++
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~---------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~--~l~~~~ 244 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPE---------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI--ALKSWP 244 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHH---------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH--HGGGCT
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHh---------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH--HHccCC
Confidence 331 2266788999999999988741 0112344 77788999999999988742 222 133344
Q ss_pred cccceeeeccccCCCCCcch----hhh--ccCCcCcEEEeccCccce
Q 038551 215 SISTQCLCLRHLNNSNSLSV----FAF--ASLRHLRTLQLYFNDLEE 255 (366)
Q Consensus 215 ~l~l~~L~~~~~~~~~~~~~----~~l--~~~~~L~~L~l~~~~l~~ 255 (366)
+ ++.|+++++. +..... ..+ ..+++|++|++++|.++.
T Consensus 245 ~--L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 245 N--LRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp T--CCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred C--cCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 3 4556665543 222211 123 237788888888887665
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=8.8e-16 Score=149.95 Aligned_cols=169 Identities=22% Similarity=0.315 Sum_probs=147.2
Q ss_pred CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551 13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS 92 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 92 (366)
..+.+.+.++.+..++.+..+++|+.|++++|.+..++....+++|+.|++++|.+..++. +..+++|+.|++++| .
T Consensus 44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N-~ 120 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHN-G 120 (605)
T ss_dssp TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTT--STTCTTCCEEECTTS-C
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChh--hccCCCCCEEEecCC-C
Confidence 4556778888899999999999999999999999998777899999999999999988774 889999999999999 6
Q ss_pred CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccc
Q 038551 93 LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADS 172 (366)
Q Consensus 93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 172 (366)
+..++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++| .+..++. +..+++|+.|++.+|.+.+
T Consensus 121 l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~------ 189 (605)
T 1m9s_A 121 ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD------ 189 (605)
T ss_dssp CCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB------
T ss_pred CCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCCC------
Confidence 66665 488999999999999999988 56899999999999995 5555554 7899999999999999875
Q ss_pred cccCCchhhhhhhhcCcccceeeeccccchhh
Q 038551 173 ILFGDSEVLVEELLVLKHLNLLTITLQSFGAL 204 (366)
Q Consensus 173 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 204 (366)
+..+..+++|+.|++++|.+...
T Consensus 190 ---------l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 190 ---------LRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ---------CGGGTTCTTCSEEECCSEEEECC
T ss_pred ---------ChHHccCCCCCEEEccCCcCcCC
Confidence 24678899999999999987754
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=2.7e-16 Score=141.57 Aligned_cols=221 Identities=14% Similarity=0.106 Sum_probs=148.7
Q ss_pred CcccEEEcccCCccc--c---CCCCCCCCccEEEccCCCCccccchhh--cCCCCCCEEEccCCCCCCCcc----hhhcC
Q 038551 34 KETTRMSLMQNAIQN--L---TEIPTCPRLRTLFLPSNHLGTVSNNFF--HSMASLRVLILSYNRSLENLP----LGIFN 102 (366)
Q Consensus 34 ~~L~~L~l~~~~~~~--l---~~~~~~~~L~~L~l~~~~~~~i~~~~~--~~l~~L~~L~l~~~~~~~~l~----~~~~~ 102 (366)
.+++.+.+.++.+.. + .....+++|++|++++|.+....+..+ ..+++|++|++++|...+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 457888888877754 1 111344669999999998865443335 789999999999994443333 23457
Q ss_pred CCCCcEEEcccccccccc-ccccCCCCCCEEEcccccccCc--cChh-hhcCCcCCcEEEeecCCccccccccccccCCc
Q 038551 103 LVSLQHLDISWTGITTLP-IELKYLVNLKCLNLEYTFRLSR--IPQQ-VISDLKMLRALRMFECGFNVELEADSILFGDS 178 (366)
Q Consensus 103 l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~--~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 178 (366)
+++|++|++++|.+..++ ..++.+++|++|++++|+..+. ++.. .+..+++|++|++.+|.++. .
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------l 212 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-----------P 212 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-----------H
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-----------h
Confidence 889999999999998666 4588999999999999654432 2211 13578899999999999864 1
Q ss_pred hhhhhh-hhcCcccceeeeccccchhh-H-hHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccce
Q 038551 179 EVLVEE-LLVLKHLNLLTITLQSFGAL-Q-RLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEE 255 (366)
Q Consensus 179 ~~~~~~-l~~l~~L~~L~l~~~~~~~~-~-~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 255 (366)
...+.. +..+++|++|++++|.+.+. + .+..+..+++ ++.|+++++.- +..+ ..+ .++|++|++++|.++.
T Consensus 213 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~--L~~L~Ls~N~l-~~lp-~~~--~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 213 TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSA--LNSLNLSFAGL-EQVP-KGL--PAKLRVLDLSSNRLNR 286 (310)
T ss_dssp HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTT--CCCEECCSSCC-CSCC-SCC--CSCCSCEECCSCCCCS
T ss_pred HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCc--CCEEECCCCCC-Cchh-hhh--cCCCCEEECCCCcCCC
Confidence 122222 46789999999999988765 2 2333322233 44455554322 2222 112 3799999999998886
Q ss_pred EeccccccccccccCCCCCcceeeee
Q 038551 256 LKIDAGELKRIREICGFHSLQKVFYK 281 (366)
Q Consensus 256 l~~~~~~~~~~~~~~~~~~L~~L~l~ 281 (366)
++. . ..+++|+.|+++
T Consensus 287 ~~~-~---------~~l~~L~~L~L~ 302 (310)
T 4glp_A 287 APQ-P---------DELPEVDNLTLD 302 (310)
T ss_dssp CCC-T---------TSCCCCSCEECS
T ss_pred Cch-h---------hhCCCccEEECc
Confidence 643 1 557888888875
No 106
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=2.8e-17 Score=152.64 Aligned_cols=252 Identities=15% Similarity=0.088 Sum_probs=156.3
Q ss_pred ccccCCC-CCCCCccEEEccCCCCccccc----hhhcCCCCCCEEEccCCCCCC----Ccchhh-------cCCCCCcEE
Q 038551 46 IQNLTEI-PTCPRLRTLFLPSNHLGTVSN----NFFHSMASLRVLILSYNRSLE----NLPLGI-------FNLVSLQHL 109 (366)
Q Consensus 46 ~~~l~~~-~~~~~L~~L~l~~~~~~~i~~----~~~~~l~~L~~L~l~~~~~~~----~l~~~~-------~~l~~L~~L 109 (366)
+..++.. ..+++|++|++++|.++.... ..+..+++|++|++++| .+. .+|..+ ..+++|++|
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 3334433 678899999999998875322 22668999999999997 333 345444 688999999
Q ss_pred Ecccccccc-----ccccccCCCCCCEEEcccccccCccChh---hhcCC---------cCCcEEEeecCCccccccccc
Q 038551 110 DISWTGITT-----LPIELKYLVNLKCLNLEYTFRLSRIPQQ---VISDL---------KMLRALRMFECGFNVELEADS 172 (366)
Q Consensus 110 ~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~---------~~L~~L~l~~~~~~~~~~~~~ 172 (366)
++++|.++. +|..+..+++|++|++++|......+.. .+..+ ++|++|++.+|.+...
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~----- 174 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG----- 174 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG-----
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH-----
Confidence 999999875 6777899999999999996543222221 12233 8999999999998741
Q ss_pred cccCCchhhhhhhhcCcccceeeeccccch--hhHhHh--hhcccCcccceeeeccccCCCCC---cch-hhhccCCcCc
Q 038551 173 ILFGDSEVLVEELLVLKHLNLLTITLQSFG--ALQRLL--SYCRLGSISTQCLCLRHLNNSNS---LSV-FAFASLRHLR 244 (366)
Q Consensus 173 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~l~--~~~~l~~l~l~~L~~~~~~~~~~---~~~-~~l~~~~~L~ 244 (366)
........+..+++|+.|++++|.+. ++..+. .+.++++ ++.|+++.+. ++. ..+ ..+..+++|+
T Consensus 175 ----~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~--L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 175 ----SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE--LKVLDLQDNT-FTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp ----GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT--CCEEECCSSC-CHHHHHHHHHHHGGGCTTCC
T ss_pred ----HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC--ccEEECcCCC-CCcHHHHHHHHHHccCCCcC
Confidence 12233367788999999999999887 222221 2334444 5556666543 221 111 3467888999
Q ss_pred EEEeccCccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccc-cccccccceEEeecCc
Q 038551 245 TLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQY-QACPRGLTKFEEHPLK 313 (366)
Q Consensus 245 ~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l-~~~~~~L~~L~l~~~~ 313 (366)
+|++++|.++........ ..+....+++|+.|+++-..+..-.+..-...+ ..+|+ |++|++++|+
T Consensus 248 ~L~L~~n~i~~~~~~~l~--~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~-L~~L~l~~N~ 314 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVV--DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD-LLFLELNGNR 314 (386)
T ss_dssp EEECTTCCCCHHHHHHHH--HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT-CCEEECTTSB
T ss_pred EEECCCCCCchhhHHHHH--HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC-ceEEEccCCc
Confidence 999999987754221110 111002267777776651111000000000011 11566 8888888777
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=2.3e-16 Score=138.47 Aligned_cols=172 Identities=15% Similarity=0.176 Sum_probs=131.1
Q ss_pred CCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 038551 32 MWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDI 111 (366)
Q Consensus 32 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 111 (366)
.+.+++.+++.++.+++++....+++|+.|++++|.+..++ . +..+++|++|++++| .++.++. +.++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-G-MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-T-GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-H-HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 45677778888888888775577888999999999888877 3 778899999999988 6677776 888889999999
Q ss_pred cccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccc
Q 038551 112 SWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHL 191 (366)
Q Consensus 112 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 191 (366)
++|.++.+|.... ++|++|++++ +.+..++. +.++++|+.|++++|.+.+ . ..+..+++|
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-------------~--~~l~~l~~L 152 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDN-NELRDTDS--LIHLKNLEILSIRNNKLKS-------------I--VMLGFLSKL 152 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCS-SCCSBSGG--GTTCTTCCEEECTTSCCCB-------------C--GGGGGCTTC
T ss_pred CCCccCCcCcccc--CcccEEEccC-CccCCChh--hcCcccccEEECCCCcCCC-------------C--hHHccCCCC
Confidence 9998888775433 8889999988 46666653 7788888888888888874 1 356777888
Q ss_pred ceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEe
Q 038551 192 NLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELK 257 (366)
Q Consensus 192 ~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~ 257 (366)
+.|++++|.+..+. .+..+++|+.|++++|.+...+
T Consensus 153 ~~L~L~~N~i~~~~------------------------------~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 153 EVLDLHGNEITNTG------------------------------GLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CEEECTTSCCCBCT------------------------------TSTTCCCCCEEEEEEEEEECCC
T ss_pred CEEECCCCcCcchH------------------------------HhccCCCCCEEeCCCCcccCCc
Confidence 88888777654331 1556778888888888666544
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=6.4e-15 Score=126.54 Aligned_cols=150 Identities=22% Similarity=0.257 Sum_probs=129.4
Q ss_pred ccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEcccc
Q 038551 36 TTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWT 114 (366)
Q Consensus 36 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~ 114 (366)
-+.++++++.+..+|.. -.++|++|++++|.+..+++..|..+++|++|++++| .++.+| ..+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence 56789999999988865 2389999999999999887777999999999999999 667776 44689999999999999
Q ss_pred cccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551 115 GITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL 193 (366)
Q Consensus 115 ~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 193 (366)
.++.++.. +..+++|++|++++ +.+..+|.. +..+++|++|++.+|.+.. .....+..+++|+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLKS-------------IPHGAFDRLSSLTH 163 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCCC-------------CCTTTTTTCTTCCE
T ss_pred cCCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcCCc-------------cCHHHHhCCCCCCE
Confidence 99988765 68999999999999 577788887 7899999999999999985 33456788899999
Q ss_pred eeeccccch
Q 038551 194 LTITLQSFG 202 (366)
Q Consensus 194 L~l~~~~~~ 202 (366)
|++.+|.+.
T Consensus 164 L~l~~N~~~ 172 (229)
T 3e6j_A 164 AYLFGNPWD 172 (229)
T ss_dssp EECTTSCBC
T ss_pred EEeeCCCcc
Confidence 999998765
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=6.6e-15 Score=124.47 Aligned_cols=150 Identities=25% Similarity=0.308 Sum_probs=126.2
Q ss_pred cEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcch-hhcCCCCCcEEEccccc
Q 038551 37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPL-GIFNLVSLQHLDISWTG 115 (366)
Q Consensus 37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~ 115 (366)
+.+++.++.++.+|.. ..++|++|++++|.+..+++.++..+++|++|++++| .++.++. .+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc
Confidence 5678888888887754 3468999999999999998887899999999999999 6666664 46889999999999999
Q ss_pred ccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccccee
Q 038551 116 ITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLL 194 (366)
Q Consensus 116 ~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 194 (366)
++.++.. +..+++|++|++++ +.+..++...+..+++|++|++.+|.+.. .....+..+++|+.|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-------------~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQNQLKS-------------VPDGVFDRLTSLQYI 153 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC-------------CCTTTTTTCTTCCEE
T ss_pred CCccCHhHhcCccCCCEEEcCC-CcCcccCHhHhccCCcCCEEECCCCccce-------------eCHHHhccCCCccEE
Confidence 9988765 68999999999999 56777777667899999999999999875 334456788999999
Q ss_pred eeccccch
Q 038551 195 TITLQSFG 202 (366)
Q Consensus 195 ~l~~~~~~ 202 (366)
++++|...
T Consensus 154 ~l~~N~~~ 161 (208)
T 2o6s_A 154 WLHDNPWD 161 (208)
T ss_dssp ECCSCCBC
T ss_pred EecCCCee
Confidence 99988654
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=4.3e-16 Score=143.36 Aligned_cols=258 Identities=16% Similarity=0.192 Sum_probs=159.4
Q ss_pred EEcccCCccc-cCCC-CCCCCccEEEccCCCCccccc----hhhcCCC-CCCEEEccCCCCCCCcchhhcCC-----CCC
Q 038551 39 MSLMQNAIQN-LTEI-PTCPRLRTLFLPSNHLGTVSN----NFFHSMA-SLRVLILSYNRSLENLPLGIFNL-----VSL 106 (366)
Q Consensus 39 L~l~~~~~~~-l~~~-~~~~~L~~L~l~~~~~~~i~~----~~~~~l~-~L~~L~l~~~~~~~~l~~~~~~l-----~~L 106 (366)
+.++.+.+++ ++.. ....+|++|++++|.++.++. ..+..++ +|++|++++|......+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5667777776 3333 555669999999998887765 5577888 89999999994333334445443 889
Q ss_pred cEEEcccccccccccc-----ccCC-CCCCEEEcccccccCccChhhhc----C-CcCCcEEEeecCCcccccccccccc
Q 038551 107 QHLDISWTGITTLPIE-----LKYL-VNLKCLNLEYTFRLSRIPQQVIS----D-LKMLRALRMFECGFNVELEADSILF 175 (366)
Q Consensus 107 ~~L~l~~~~~~~l~~~-----l~~l-~~L~~L~l~~~~~~~~~~~~~~~----~-~~~L~~L~l~~~~~~~~~~~~~~~~ 175 (366)
++|++++|.++..+.. +..+ ++|++|++++| .++..+...+. . .++|++|++++|.+.+.
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------- 153 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-------- 153 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS--------
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH--------
Confidence 9999999988754432 4555 78999999985 45555443232 3 36899999999988751
Q ss_pred CCchhhhhhhhcCc-ccceeeeccccchhhH--hHhh-hcccCcccceeeeccccCCCCCcch----hhhcc-CCcCcEE
Q 038551 176 GDSEVLVEELLVLK-HLNLLTITLQSFGALQ--RLLS-YCRLGSISTQCLCLRHLNNSNSLSV----FAFAS-LRHLRTL 246 (366)
Q Consensus 176 ~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~--~l~~-~~~l~~l~l~~L~~~~~~~~~~~~~----~~l~~-~~~L~~L 246 (366)
........+...+ +|+.|++++|.+.... .+.. +...+. .++.|+++.+. +..... ..+.. .++|++|
T Consensus 154 -~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L 230 (362)
T 3goz_A 154 -SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA-SVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSL 230 (362)
T ss_dssp -CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT-TCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEE
T ss_pred -HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCC-CCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEE
Confidence 1234455566665 8999999998876432 2221 222221 35556666543 333222 12334 4589999
Q ss_pred EeccCccceEeccccccccccccCCCCCcceeeeeccc---ceeEEeeccCccccccccccceEEeecCc
Q 038551 247 QLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILK---IEARDMACTCSQYQACPRGLTKFEEHPLK 313 (366)
Q Consensus 247 ~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~---l~~L~l~~~c~~l~~~~~~L~~L~l~~~~ 313 (366)
++++|.++..+..... ... ..+++|+.|+++-.. ...-.+..-...+...++ |++|++++|+
T Consensus 231 ~Ls~N~l~~~~~~~l~--~~~--~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~-L~~LdL~~N~ 295 (362)
T 3goz_A 231 NLCLNCLHGPSLENLK--LLK--DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK-IILVDKNGKE 295 (362)
T ss_dssp ECCSSCCCCCCHHHHH--HTT--TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE-EEEECTTSCB
T ss_pred ECcCCCCCcHHHHHHH--HHH--hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc-eEEEecCCCc
Confidence 9999988766542211 111 557889999887211 100000000112223556 8888888887
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=7.1e-15 Score=125.44 Aligned_cols=150 Identities=17% Similarity=0.242 Sum_probs=127.0
Q ss_pred cEEEcccCCccccCCCCCCCCccEEEccCCCCccc-cchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEcccc
Q 038551 37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTV-SNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWT 114 (366)
Q Consensus 37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i-~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~ 114 (366)
+.++++++.++.+|.. -...++.|++++|.+..+ +..+|..+++|++|++++| .++.++ ..+.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence 5899999999998864 234678999999999887 4456889999999999999 566665 47899999999999999
Q ss_pred cccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551 115 GITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL 193 (366)
Q Consensus 115 ~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 193 (366)
.++.++.. +..+++|++|++++ +.+..++...+..+++|++|++.+|.+.. ..+..+..+++|+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITT-------------VAPGAFDTLHSLST 157 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCC-------------BCTTTTTTCTTCCE
T ss_pred ccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCE-------------ECHHHhcCCCCCCE
Confidence 99988765 89999999999999 45666654448899999999999999986 45677888999999
Q ss_pred eeeccccch
Q 038551 194 LTITLQSFG 202 (366)
Q Consensus 194 L~l~~~~~~ 202 (366)
|++++|.+.
T Consensus 158 L~L~~N~l~ 166 (220)
T 2v70_A 158 LNLLANPFN 166 (220)
T ss_dssp EECCSCCEE
T ss_pred EEecCcCCc
Confidence 999999876
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=9.7e-15 Score=141.22 Aligned_cols=183 Identities=23% Similarity=0.234 Sum_probs=100.6
Q ss_pred cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccc
Q 038551 35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWT 114 (366)
Q Consensus 35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 114 (366)
+++.|++++|.++.+|... .++|++|++++|.++.+| . .+++|++|++++| .++.+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip-~---~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP-E---LPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC-C---CCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc-c---ccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 5666666666666655431 255666666666666655 2 2566666666666 4444555 433 6666666666
Q ss_pred ccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccccee
Q 038551 115 GITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLL 194 (366)
Q Consensus 115 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 194 (366)
.++.+|. .+++|+.|++++ +.++.+|. .+++|++|++.+|.+.. ++. +. ++|+.|
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~----~l~~L~~L~Ls~N~L~~--------------lp~-l~--~~L~~L 185 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADN-NQLTMLPE----LPTSLEVLSVRNNQLTF--------------LPE-LP--ESLEAL 185 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSC--------------CCC-CC--TTCCEE
T ss_pred cCCCCCC---cCccccEEeCCC-CccCcCCC----cCCCcCEEECCCCCCCC--------------cch-hh--CCCCEE
Confidence 6666665 456666666666 34444543 34566666666666653 111 22 566666
Q ss_pred eeccccchhhHhHhhhccc--CcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccce
Q 038551 195 TITLQSFGALQRLLSYCRL--GSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEE 255 (366)
Q Consensus 195 ~l~~~~~~~~~~l~~~~~l--~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 255 (366)
++++|.+..++.+.. ++ ..-.+..|+++++. ++..+ ..+..+++|+.|++++|.++.
T Consensus 186 ~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~-l~~lp-~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 186 DVSTNLLESLPAVPV--RNHHSEETEIFFRCRENR-ITHIP-ENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ECCSSCCSSCCCCC----------CCEEEECCSSC-CCCCC-GGGGGSCTTEEEECCSSSCCH
T ss_pred ECcCCCCCchhhHHH--hhhcccccceEEecCCCc-ceecC-HHHhcCCCCCEEEeeCCcCCC
Confidence 666666665544111 11 00001445554432 22222 125568888999998887764
No 113
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=1.1e-14 Score=142.50 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=85.5
Q ss_pred CCCCCcccEEEcccCC-ccccCC---------------C-CCCCCccEEEccCCCCccccchhhc-CCCCCCEEEccCCC
Q 038551 30 IGMWKETTRMSLMQNA-IQNLTE---------------I-PTCPRLRTLFLPSNHLGTVSNNFFH-SMASLRVLILSYNR 91 (366)
Q Consensus 30 ~~~~~~L~~L~l~~~~-~~~l~~---------------~-~~~~~L~~L~l~~~~~~~i~~~~~~-~l~~L~~L~l~~~~ 91 (366)
+.++++|+.|++.++. +.++.. . ..+++|+.|++++|.++......+. .+++|++|++++|.
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 3445677777777764 222110 0 2466777777777766533222232 57777777777774
Q ss_pred CCCC--cchhhcCCCCCcEEEcccccccc-----ccccccCCCCCCEEEcccccccCccC----hhhhcCCcCCcEEEee
Q 038551 92 SLEN--LPLGIFNLVSLQHLDISWTGITT-----LPIELKYLVNLKCLNLEYTFRLSRIP----QQVISDLKMLRALRMF 160 (366)
Q Consensus 92 ~~~~--l~~~~~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~ 160 (366)
.++. ++....++++|++|++++|.++. ++.....+++|+.|++++|. ..+. ..++.++++|++|++.
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecC
Confidence 3333 34444567777777777776542 23333466677777777754 1221 1113456777777777
Q ss_pred cCCccccccccccccCCchhhhhhhhcCcccceeee
Q 038551 161 ECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTI 196 (366)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 196 (366)
+|.... ..+..+..+++|+.|++
T Consensus 220 ~~~~~~-------------~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 220 RAVPLE-------------KLATLLQRAPQLEELGT 242 (594)
T ss_dssp TTSCHH-------------HHHHHHHHCTTCSEEEC
T ss_pred CCCcHH-------------HHHHHHhcCCcceEccc
Confidence 763221 24444455555555554
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=3.2e-14 Score=130.73 Aligned_cols=151 Identities=25% Similarity=0.316 Sum_probs=129.3
Q ss_pred CccEEEecCCCcccCC--CCC-CCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEc
Q 038551 13 KENFLVLAGVGLTEAP--SIG-MWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLIL 87 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~~--~~~-~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l 87 (366)
..+.+++.++.+..++ .+. ++++|+.|++++|.++.++.. ..+++|+.|++++|.+..+++..|..+++|++|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 3567899999999884 355 899999999999999998754 88999999999999999998888999999999999
Q ss_pred cCCCCCCCc-chhhcCCCCCcEEEccccccccccccc----cCCCCCCEEEcccccccCccChhhhcCCcC--CcEEEee
Q 038551 88 SYNRSLENL-PLGIFNLVSLQHLDISWTGITTLPIEL----KYLVNLKCLNLEYTFRLSRIPQQVISDLKM--LRALRMF 160 (366)
Q Consensus 88 ~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~~~l----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~l~ 160 (366)
++| .++.+ +..+.++++|++|++++|.++.+|..+ ..+++|++|++++ +.+..++...+..++. ++.|++.
T Consensus 120 ~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 120 YNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred CCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEec
Confidence 999 55554 677899999999999999999998764 6799999999999 6777888665777776 4889999
Q ss_pred cCCcc
Q 038551 161 ECGFN 165 (366)
Q Consensus 161 ~~~~~ 165 (366)
+|.+.
T Consensus 198 ~N~~~ 202 (361)
T 2xot_A 198 NNPLE 202 (361)
T ss_dssp SSCEE
T ss_pred CCCcc
Confidence 99876
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=3.8e-14 Score=115.50 Aligned_cols=130 Identities=23% Similarity=0.212 Sum_probs=91.5
Q ss_pred CCcccEEEcccCCcc--ccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 038551 33 WKETTRMSLMQNAIQ--NLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHL 109 (366)
Q Consensus 33 ~~~L~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L 109 (366)
.++|+.|++++|.+. .+|.. ..+++|++|++++|.+..+ .. +..+++|++|++++|.....+|..+.++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SS-CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hh-hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 367888888888777 56665 6777888888888877766 33 6777888888888873333366666667788888
Q ss_pred Ecccccccccc--ccccCCCCCCEEEcccccccCccCh---hhhcCCcCCcEEEeecCCcc
Q 038551 110 DISWTGITTLP--IELKYLVNLKCLNLEYTFRLSRIPQ---QVISDLKMLRALRMFECGFN 165 (366)
Q Consensus 110 ~l~~~~~~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 165 (366)
++++|.++.+| ..+..+++|++|++++| .+...+. ..+..+++|++|++.+|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888777665 45777777888887774 4445544 33667777777777777655
No 116
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=7.2e-14 Score=127.83 Aligned_cols=215 Identities=17% Similarity=0.166 Sum_probs=159.5
Q ss_pred CccEEEecCCCcccCC--CCCCCCcccEEEcccCCccc-cCCC--CCCCCccE-EEccCCCCccccchhhcCCCCCCEEE
Q 038551 13 KENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQN-LTEI--PTCPRLRT-LFLPSNHLGTVSNNFFHSMASLRVLI 86 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~L~~-L~l~~~~~~~i~~~~~~~l~~L~~L~ 86 (366)
..+.+++.++.++.+| .+.++++|+.|++++|.+.+ ++.. ..++++.. +.+.+|.+..+++++|..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 4678899999999995 48999999999999999865 5544 67787765 56667899999888899999999999
Q ss_pred ccCCCCCCCcch-hhcCCCCCcEEEcccc-cccccccc-ccCC-CCCCEEEcccccccCccChhhhcCCcCCcEEEeec-
Q 038551 87 LSYNRSLENLPL-GIFNLVSLQHLDISWT-GITTLPIE-LKYL-VNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFE- 161 (366)
Q Consensus 87 l~~~~~~~~l~~-~~~~l~~L~~L~l~~~-~~~~l~~~-l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~- 161 (366)
+++| .++.+|. .+....++.+|++.++ .+..++.. +..+ ..++.|++++ +.++.++.. .....+|+++.+.+
T Consensus 111 l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~-~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 111 ISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS-AFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-SSTTEEEEEEECTTC
T ss_pred cccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh-hccccchhHHhhccC
Confidence 9999 6666553 4556678889999765 78877764 4555 4689999998 678888877 44567899999976
Q ss_pred CCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCC
Q 038551 162 CGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLR 241 (366)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~ 241 (366)
|.+.. .....+..+++|+.|++++|.+..++.- .+.+++. |...++..+...+ .+..++
T Consensus 188 n~l~~-------------i~~~~f~~l~~L~~LdLs~N~l~~lp~~-~~~~L~~-----L~~l~~~~l~~lP--~l~~l~ 246 (350)
T 4ay9_X 188 NNLEE-------------LPNDVFHGASGPVILDISRTRIHSLPSY-GLENLKK-----LRARSTYNLKKLP--TLEKLV 246 (350)
T ss_dssp TTCCC-------------CCTTTTTTEECCSEEECTTSCCCCCCSS-SCTTCCE-----EECTTCTTCCCCC--CTTTCC
T ss_pred CcccC-------------CCHHHhccCcccchhhcCCCCcCccChh-hhccchH-----hhhccCCCcCcCC--CchhCc
Confidence 44542 2234568899999999999998887642 1334333 4444444433333 366788
Q ss_pred cCcEEEeccC
Q 038551 242 HLRTLQLYFN 251 (366)
Q Consensus 242 ~L~~L~l~~~ 251 (366)
+|+.+++.++
T Consensus 247 ~L~~l~l~~~ 256 (350)
T 4ay9_X 247 ALMEASLTYP 256 (350)
T ss_dssp SCCEEECSCH
T ss_pred ChhhCcCCCC
Confidence 8888888654
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=1.7e-13 Score=132.54 Aligned_cols=184 Identities=19% Similarity=0.139 Sum_probs=138.6
Q ss_pred cCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551 9 INKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS 88 (366)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~ 88 (366)
|.......+++.++++.++|.-. +++|+.|++++|.++.+| ..+++|++|++++|.++.+|. +.. +|++|+++
T Consensus 56 C~~~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 56 CLINQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVD 128 (571)
T ss_dssp HHHTTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred cccCCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence 44457888999999999986522 489999999999999988 578999999999999988887 433 99999999
Q ss_pred CCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccc
Q 038551 89 YNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVEL 168 (366)
Q Consensus 89 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 168 (366)
+| .++.+|. .+++|++|++++|.++.+|. .+++|++|++++ +.++.+|. +. ++|+.|++++|.++...
T Consensus 129 ~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 129 NN-QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp SS-CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCSSCC
T ss_pred CC-cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCCchh
Confidence 99 6677887 68999999999999998886 678999999999 46666776 44 89999999999987411
Q ss_pred cccccccCCchhhhhhh-hcCcccceeeeccccchhhHhHhhhcccCcccceeeecccc
Q 038551 169 EADSILFGDSEVLVEEL-LVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHL 226 (366)
Q Consensus 169 ~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~ 226 (366)
.+...+ ...+.|+.|++++|.+..+|.. +.++++ +..|+++++
T Consensus 197 -----------~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~--l~~l~~--L~~L~L~~N 240 (571)
T 3cvr_A 197 -----------AVPVRNHHSEETEIFFRCRENRITHIPEN--ILSLDP--TCTIILEDN 240 (571)
T ss_dssp -----------CCC--------CCEEEECCSSCCCCCCGG--GGGSCT--TEEEECCSS
T ss_pred -----------hHHHhhhcccccceEEecCCCcceecCHH--HhcCCC--CCEEEeeCC
Confidence 111011 1123338999999988877652 233554 444555543
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=6.2e-14 Score=111.87 Aligned_cols=125 Identities=25% Similarity=0.238 Sum_probs=86.9
Q ss_pred CCcccEEEcccCCcc--ccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 038551 33 WKETTRMSLMQNAIQ--NLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHL 109 (366)
Q Consensus 33 ~~~L~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L 109 (366)
.++++.|++++|.++ .++.. ..+++|++|++++|.+..+ .. +..+++|++|++++|...+.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TT-CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hh-hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888888888887 56655 6778888888888877766 33 7778888888888883333366666677788888
Q ss_pred Ecccccccccc--ccccCCCCCCEEEcccccccCccCh---hhhcCCcCCcEEEee
Q 038551 110 DISWTGITTLP--IELKYLVNLKCLNLEYTFRLSRIPQ---QVISDLKMLRALRMF 160 (366)
Q Consensus 110 ~l~~~~~~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~ 160 (366)
++++|.++.++ ..+..+++|++|++++| .+...+. ..+..+++|+.|++.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 88888777654 55777777777777774 4444443 336666777766543
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=3e-14 Score=117.09 Aligned_cols=133 Identities=15% Similarity=0.203 Sum_probs=69.0
Q ss_pred CCCCCCCcccEEEcccCCccccCCCCC-CCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhh-cCCCC
Q 038551 28 PSIGMWKETTRMSLMQNAIQNLTEIPT-CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGI-FNLVS 105 (366)
Q Consensus 28 ~~~~~~~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~~l~~ 105 (366)
+.+..+.+|+.|++++|.++.++.... .++|++|++++|.+..+ +. +..+++|++|++++| .++.+|+.+ ..+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG-FPLLRRLKTLLVNNN-RICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CC-CCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cc-cccCCCCCEEECCCC-cccccCcchhhcCCC
Confidence 334445566666666666665544322 23666666666666555 22 555666666666666 444444332 55556
Q ss_pred CcEEEccccccccccc--cccCCCCCCEEEcccccccCccChh---hhcCCcCCcEEEeecCCc
Q 038551 106 LQHLDISWTGITTLPI--ELKYLVNLKCLNLEYTFRLSRIPQQ---VISDLKMLRALRMFECGF 164 (366)
Q Consensus 106 L~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~ 164 (366)
|++|++++|.++.+|. .+..+++|++|++++| .+..+|.. .+..+++|+.|++.+|..
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 6666666665555554 4555555555555553 33333331 234445555555444443
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=9.3e-14 Score=114.17 Aligned_cols=128 Identities=22% Similarity=0.264 Sum_probs=113.7
Q ss_pred cCCccEEEecCCCcccCCCCCCCC-cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccC
Q 038551 11 KEKENFLVLAGVGLTEAPSIGMWK-ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSY 89 (366)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~ 89 (366)
....+.+++.++.+..++.+..+. +|+.|++++|.++.++....+++|++|++++|.+..+++.++..+++|++|++++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 356678899999999988777766 9999999999999985558999999999999999999888778999999999999
Q ss_pred CCCCCCcch--hhcCCCCCcEEEcccccccccccc----ccCCCCCCEEEcccccc
Q 038551 90 NRSLENLPL--GIFNLVSLQHLDISWTGITTLPIE----LKYLVNLKCLNLEYTFR 139 (366)
Q Consensus 90 ~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~l~~~----l~~l~~L~~L~l~~~~~ 139 (366)
| .++.+|. .+..+++|++|++++|.+..+|.. +..+++|+.|+++.|..
T Consensus 98 N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 98 N-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp C-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred C-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 9 6788886 788999999999999999988874 88999999999998543
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.48 E-value=3.1e-13 Score=112.79 Aligned_cols=124 Identities=20% Similarity=0.277 Sum_probs=78.3
Q ss_pred EEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEcccccc
Q 038551 38 RMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWTGI 116 (366)
Q Consensus 38 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~ 116 (366)
.++++++.++.+|.. -.++|++|++++|.+..+|.. +..+++|++|++++| .++.++ ..|.++++|++|++++|.+
T Consensus 14 ~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCcc
Confidence 455555555555533 124566666666666666643 666777777777777 444443 4466677777777777777
Q ss_pred ccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551 117 TTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN 165 (366)
Q Consensus 117 ~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 165 (366)
+.++. .+..+++|++|++++ +.+..++...+..+++|+.|++.+|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66554 366777777777777 4555666555667777777777777664
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.47 E-value=3.7e-13 Score=112.21 Aligned_cols=128 Identities=22% Similarity=0.247 Sum_probs=80.1
Q ss_pred cEEEcccCCccccCCCCCCCCccEEEccCCCCccccch-hhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccc
Q 038551 37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNN-FFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTG 115 (366)
Q Consensus 37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 115 (366)
+.++++++.++.+|.. -..++++|++++|.++.+++. ++..+++|++|++++|...+..|..+.++++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 4556666666555543 112666677777766665542 46667777777777773333335666777777777777777
Q ss_pred ccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551 116 ITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 116 ~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
++.++.. +..+++|++|++++| .+..++...+..+++|++|++.+|.+..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 7765543 667777777777774 4443333336677777777777777653
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=2.5e-13 Score=110.58 Aligned_cols=132 Identities=21% Similarity=0.227 Sum_probs=112.8
Q ss_pred CCccEEEecCCCcc--cCCC-CCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551 12 EKENFLVLAGVGLT--EAPS-IGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS 88 (366)
Q Consensus 12 ~~~~~~~~~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~ 88 (366)
...+.+++.++.+. .+|. +..+++|+.|++++|.++.+.....+++|++|++++|.+....+..+..+++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 56788899999998 7754 58899999999999999998444889999999999999987445547789999999999
Q ss_pred CCCCCCCcc--hhhcCCCCCcEEEccccccccccc----cccCCCCCCEEEcccccccCccCh
Q 038551 89 YNRSLENLP--LGIFNLVSLQHLDISWTGITTLPI----ELKYLVNLKCLNLEYTFRLSRIPQ 145 (366)
Q Consensus 89 ~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~l~~----~l~~l~~L~~L~l~~~~~~~~~~~ 145 (366)
+| .++.+| ..+..+++|++|++++|.++.+|. .+..+++|++|++.+| ....+|.
T Consensus 104 ~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 104 GN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp SS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred CC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 99 677765 678999999999999999998887 6899999999999995 5555554
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=5.6e-13 Score=111.19 Aligned_cols=124 Identities=26% Similarity=0.289 Sum_probs=96.4
Q ss_pred cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCC
Q 038551 15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL 93 (366)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~ 93 (366)
..+++.++++..+|.-. .++++.|++++|.++.+|.. ..+++|+.|++++|.+..+++..|..+++|++|++++| .+
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-cc
Confidence 56788888888886422 36888888888888887755 77888888888888888887777888888888888888 45
Q ss_pred CCcc-hhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEccccccc
Q 038551 94 ENLP-LGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRL 140 (366)
Q Consensus 94 ~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~ 140 (366)
+.++ ..+.++++|++|++++|.++.+|.. +..+++|+.|++++|+..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 5544 4678888888888888888877764 778888888888885443
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.47 E-value=5.4e-13 Score=109.63 Aligned_cols=127 Identities=22% Similarity=0.302 Sum_probs=72.2
Q ss_pred cEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcch-hhcCCCCCcEEEccccc
Q 038551 37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPL-GIFNLVSLQHLDISWTG 115 (366)
Q Consensus 37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~ 115 (366)
+.+++.++.++.+|.. ..++|+.|++++|.++.+++..+..+++|++|++++| .++.++. .+.++++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCC
Confidence 3444555555544432 2245566666666665555554555666666666666 4444443 34556666666666666
Q ss_pred ccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551 116 ITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 116 ~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
++.+|.. +..+++|++|++++ +.+..++...+..+++|++|++.+|.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6655543 45666666666666 34555555545566667777777666653
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=4.7e-13 Score=111.59 Aligned_cols=133 Identities=23% Similarity=0.230 Sum_probs=110.5
Q ss_pred eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC---CCCCCccEEEccCCCCccccchhhcCCCCCC
Q 038551 7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI---PTCPRLRTLFLPSNHLGTVSNNFFHSMASLR 83 (366)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~ 83 (366)
|.|.. +.+++.++++..+|... ..+++.|++++|.+..++.. ..+++|++|++++|.++.+++..|..+++|+
T Consensus 6 C~C~~---~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 6 CHCEG---TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp SEEET---TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CEECC---CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 55543 57899999999997522 35999999999999997752 7899999999999999988766699999999
Q ss_pred EEEccCCCCCCCcc-hhhcCCCCCcEEEccccccccc-cccccCCCCCCEEEcccccccCccC
Q 038551 84 VLILSYNRSLENLP-LGIFNLVSLQHLDISWTGITTL-PIELKYLVNLKCLNLEYTFRLSRIP 144 (366)
Q Consensus 84 ~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~ 144 (366)
+|++++| .++.++ ..+.++++|++|++++|.++.+ |..+..+++|++|++++|......+
T Consensus 82 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 82 ELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred EEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999999 555554 5588999999999999999866 5678999999999999975554443
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=6.4e-14 Score=139.97 Aligned_cols=110 Identities=27% Similarity=0.260 Sum_probs=95.0
Q ss_pred CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEE
Q 038551 53 PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCL 132 (366)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L 132 (366)
..++.|+.|++++|.+..++.. +..+++|++|+|++| .++.+|..++++++|++|+|++|.++.+|..++.+++|++|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred ccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 6778899999999988888887 447899999999999 66788888889999999999999998888888999999999
Q ss_pred EcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551 133 NLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 166 (366)
++++ +.++.+|.. +.++++|+.|++.+|.+.+
T Consensus 299 ~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 299 YFFD-NMVTTLPWE-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp ECCS-SCCCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred ECCC-CCCCccChh-hhcCCCccEEeCCCCccCC
Confidence 9998 466788887 8889999999999998876
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.45 E-value=1.3e-12 Score=107.41 Aligned_cols=129 Identities=24% Similarity=0.339 Sum_probs=102.9
Q ss_pred ccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551 14 ENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91 (366)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 91 (366)
...+.+.++++..+|. .-.++|+.|++++|.++.++.. ..+++|++|++++|.++.+++.++..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N- 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN- 86 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-
Confidence 3567788888888863 3347899999999998887654 67889999999999998888877888999999999999
Q ss_pred CCCCcch-hhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccC
Q 038551 92 SLENLPL-GIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIP 144 (366)
Q Consensus 92 ~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~ 144 (366)
.++.+|. .+..+++|++|++++|.++.+|.. +..+++|++|++++|+.....+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 5565554 467889999999999998888775 5788999999999865554443
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=6.1e-13 Score=106.03 Aligned_cols=124 Identities=21% Similarity=0.208 Sum_probs=106.3
Q ss_pred CCccEEEecCCCcc--cCC-CCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551 12 EKENFLVLAGVGLT--EAP-SIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS 88 (366)
Q Consensus 12 ~~~~~~~~~~~~~~--~~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~ 88 (366)
...+.+++.++.+. .+| .+..+++|+.|++++|.++.++....+++|++|++++|.+....+..+..+++|++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 56778899999998 665 468899999999999999998444899999999999999987444447789999999999
Q ss_pred CCCCCCCcc--hhhcCCCCCcEEEccccccccccc----cccCCCCCCEEEccc
Q 038551 89 YNRSLENLP--LGIFNLVSLQHLDISWTGITTLPI----ELKYLVNLKCLNLEY 136 (366)
Q Consensus 89 ~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~l~~----~l~~l~~L~~L~l~~ 136 (366)
+| .++.++ ..+..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus 97 ~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 97 GN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99 667654 778999999999999999998876 588999999998863
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=1.4e-12 Score=130.21 Aligned_cols=152 Identities=22% Similarity=0.242 Sum_probs=99.5
Q ss_pred CcccEEEcccCCccccCCC-CCCCCccEEE-----ccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 038551 34 KETTRMSLMQNAIQNLTEI-PTCPRLRTLF-----LPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQ 107 (366)
Q Consensus 34 ~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~-----l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 107 (366)
+.++.|++.++.+...+.. .....|..+. +..|.+. +++..+..++.|++|++++| .+..+|..+.++++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCC
Confidence 5688889988888775543 2333333333 3333333 34555889999999999999 6778998888999999
Q ss_pred EEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhc
Q 038551 108 HLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLV 187 (366)
Q Consensus 108 ~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (366)
+|+|++|.++.+|..+..+++|++|++++| .+..+|.. +.++++|++|++.+|.+. .++..+..
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~--------------~lp~~~~~ 314 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSCFQLKYFYFFDNMVT--------------TLPWEFGN 314 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGGTTCSEEECCSSCCC--------------CCCSSTTS
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCCCCCCEEECCCCCCC--------------ccChhhhc
Confidence 999999999999999999999999999995 56688887 899999999999999986 45667899
Q ss_pred Ccccceeeeccccchh
Q 038551 188 LKHLNLLTITLQSFGA 203 (366)
Q Consensus 188 l~~L~~L~l~~~~~~~ 203 (366)
+++|+.|++++|.+.+
T Consensus 315 l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 315 LCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CTTCCCEECTTSCCCS
T ss_pred CCCccEEeCCCCccCC
Confidence 9999999999999875
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=7.8e-12 Score=121.30 Aligned_cols=147 Identities=18% Similarity=0.177 Sum_probs=114.6
Q ss_pred CCCCCcccEEE-cccCC-------------ccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCC
Q 038551 30 IGMWKETTRMS-LMQNA-------------IQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLEN 95 (366)
Q Consensus 30 ~~~~~~L~~L~-l~~~~-------------~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~ 95 (366)
++.+++|+.|+ ++.+. +..++. ..|+.|++++|.++.+|. ++.+++|++|++++| .++.
T Consensus 405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~ 477 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY----ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRA 477 (567)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH----TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCC
T ss_pred HHHHHhcccCcchhhcccchhhhhhhhcccccccCc----cCceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccc
Confidence 45566777777 44443 333322 258999999999998886 888999999999999 7779
Q ss_pred cchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCcc--ChhhhcCCcCCcEEEeecCCcccccccccc
Q 038551 96 LPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRI--PQQVISDLKMLRALRMFECGFNVELEADSI 173 (366)
Q Consensus 96 l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 173 (366)
+|..++++++|++|++++|.++.+| .++.+++|++|++++| .+..+ |.. +..+++|+.|++.+|.+.+..
T Consensus 478 lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~----- 549 (567)
T 1dce_A 478 LPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE----- 549 (567)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTSGGGGSS-----
T ss_pred cchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHH-HhcCCCCCEEEecCCcCCCCc-----
Confidence 9999999999999999999999998 7899999999999994 56665 665 889999999999999987521
Q ss_pred ccCCchhhhhhhhcCcccceeee
Q 038551 174 LFGDSEVLVEELLVLKHLNLLTI 196 (366)
Q Consensus 174 ~~~~~~~~~~~l~~l~~L~~L~l 196 (366)
.........+++|+.|++
T Consensus 550 -----~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 -----GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -----SCTTHHHHHCTTCSEEEC
T ss_pred -----cHHHHHHHHCcccCccCC
Confidence 112233345778887753
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=1.4e-11 Score=111.58 Aligned_cols=217 Identities=11% Similarity=0.073 Sum_probs=118.6
Q ss_pred CCcccEEEcccCCcc--------------------ccCCC--CC--------CCCccEEEccCCCCccccchhhcCCCCC
Q 038551 33 WKETTRMSLMQNAIQ--------------------NLTEI--PT--------CPRLRTLFLPSNHLGTVSNNFFHSMASL 82 (366)
Q Consensus 33 ~~~L~~L~l~~~~~~--------------------~l~~~--~~--------~~~L~~L~l~~~~~~~i~~~~~~~l~~L 82 (366)
+++|+.|++++|.+. .++.. .. |++|+.+++.. .+..|++.+|..|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 678999999998887 22222 34 67777777777 6777777777777777
Q ss_pred CEEEccCCCCCCCcc-hhhcCCCCCcEEEcccccc----ccccc-cccCCCCC--------------------------C
Q 038551 83 RVLILSYNRSLENLP-LGIFNLVSLQHLDISWTGI----TTLPI-ELKYLVNL--------------------------K 130 (366)
Q Consensus 83 ~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~----~~l~~-~l~~l~~L--------------------------~ 130 (366)
+.+++..| .+..++ .+|.++.++.++....... ..+.. .+..+..| .
T Consensus 127 ~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 127 KICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred ceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 77777776 333333 3455555555555443211 01110 01112222 2
Q ss_pred EEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhh
Q 038551 131 CLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSY 210 (366)
Q Consensus 131 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~ 210 (366)
.+.+.+ .........+...+++|+.+++.+|.+.. -....+..+.+|+.+++..| +..++.- .+
T Consensus 206 ~l~~~~-~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-------------I~~~aF~~~~~L~~l~l~~n-i~~I~~~-aF 269 (329)
T 3sb4_A 206 FLTIEG-KLDNADFKLIRDYMPNLVSLDISKTNATT-------------IPDFTFAQKKYLLKIKLPHN-LKTIGQR-VF 269 (329)
T ss_dssp EEEEEE-CCCHHHHHHHHHHCTTCCEEECTTBCCCE-------------ECTTTTTTCTTCCEEECCTT-CCEECTT-TT
T ss_pred eEEEee-eecHHHHHHHHHhcCCCeEEECCCCCcce-------------ecHhhhhCCCCCCEEECCcc-cceehHH-Hh
Confidence 222221 00000000001136677777777776653 33445566777777777665 3333221 12
Q ss_pred cccCcccce-eeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceee
Q 038551 211 CRLGSISTQ-CLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVF 279 (366)
Q Consensus 211 ~~l~~l~l~-~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~ 279 (366)
..+.+ ++ .+.+.. .++..+-.+|.+|++|+.++++.+.++.++..++ ..+++|+.+.
T Consensus 270 ~~~~~--L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF--------~~~~~L~~ly 327 (329)
T 3sb4_A 270 SNCGR--LAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF--------GNGVPSKLIY 327 (329)
T ss_dssp TTCTT--CCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT--------CTTCCCCEEE
T ss_pred hCChh--ccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhh--------cCCcchhhhc
Confidence 23332 33 344443 3333333458899999999999999999987665 5567777764
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=1.3e-13 Score=115.47 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=65.1
Q ss_pred CccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhh
Q 038551 68 LGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQV 147 (366)
Q Consensus 68 ~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 147 (366)
+..++.. +..+++|++|++++| .++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++| .+..+| .
T Consensus 37 l~~l~~~-~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~- 110 (198)
T 1ds9_A 37 IEKMDAT-LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-G- 110 (198)
T ss_dssp CCCCHHH-HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-H-
T ss_pred HhhhhHH-HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-c-
Confidence 3344433 555666666666666 444455 455566666666666666666555555566666666663 444444 2
Q ss_pred hcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchh
Q 038551 148 ISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA 203 (366)
Q Consensus 148 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 203 (366)
+..+++|++|++.+|.+.. ......+..+++|+.|++++|.+..
T Consensus 111 ~~~l~~L~~L~l~~N~i~~------------~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITN------------WGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHHHSSEEEESEEECCC------------HHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred cccCCCCCEEECCCCcCCc------------hhHHHHHhcCCCCCEEEecCCcccc
Confidence 5555666666666666553 1112345556666666666665543
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.27 E-value=3.6e-11 Score=98.41 Aligned_cols=99 Identities=19% Similarity=0.297 Sum_probs=57.0
Q ss_pred cEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchh-hcCCCCCcEEEccccc
Q 038551 37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLG-IFNLVSLQHLDISWTG 115 (366)
Q Consensus 37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~ 115 (366)
+.++++++.+..+|... .++|++|++++|.+..+++..|..+++|++|++++| .++.+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 34555555555554431 145666666666665555444666666666666666 44545433 3556666666666666
Q ss_pred ccccccc-ccCCCCCCEEEcccc
Q 038551 116 ITTLPIE-LKYLVNLKCLNLEYT 137 (366)
Q Consensus 116 ~~~l~~~-l~~l~~L~~L~l~~~ 137 (366)
++.+|.. +..+++|++|++++|
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS
T ss_pred cceeCHHHhccccCCCEEEeCCC
Confidence 6666554 566666666666663
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=1.5e-11 Score=119.30 Aligned_cols=121 Identities=22% Similarity=0.217 Sum_probs=103.1
Q ss_pred cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccc
Q 038551 35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWT 114 (366)
Q Consensus 35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 114 (366)
.|+.|++++|.++.+|....+++|+.|++++|.+..+|.. ++.+++|++|++++| .++.+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 5899999999999988778889999999999999999886 889999999999999 677788 7899999999999999
Q ss_pred ccccc--cccccCCCCCCEEEcccccccCccChh---hhcCCcCCcEEEe
Q 038551 115 GITTL--PIELKYLVNLKCLNLEYTFRLSRIPQQ---VISDLKMLRALRM 159 (366)
Q Consensus 115 ~~~~l--~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l 159 (366)
.++.+ |..++.+++|+.|++++| .+...|.. .+..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 99987 788999999999999995 45444432 2445888988863
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.23 E-value=6.6e-11 Score=96.81 Aligned_cols=102 Identities=24% Similarity=0.327 Sum_probs=63.6
Q ss_pred cEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEccc
Q 038551 59 RTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEY 136 (366)
Q Consensus 59 ~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~ 136 (366)
+.++++++.++.+|..+ .++|++|++++| .++.+ |..+.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45666666666666552 256666777666 33333 44566666677777777666666654 46666677777766
Q ss_pred ccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551 137 TFRLSRIPQQVISDLKMLRALRMFECGFN 165 (366)
Q Consensus 137 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 165 (366)
+.+..++...+..+++|++|++.+|.+.
T Consensus 91 -N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 -NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 4555555544666666777777666655
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.22 E-value=8.7e-11 Score=95.70 Aligned_cols=97 Identities=19% Similarity=0.241 Sum_probs=39.3
Q ss_pred EEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcch-hhcCCCCCcEEEcccccc
Q 038551 38 RMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPL-GIFNLVSLQHLDISWTGI 116 (366)
Q Consensus 38 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~ 116 (366)
.++++++.++.+|... .++|++|++++|.+..+++..|..+++|++|++++| .++.+|. .+.++++|++|++++|.+
T Consensus 13 ~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 13 TVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCcc
Confidence 3444444444433221 134444444444444443333444444444444444 2333332 223444444444444444
Q ss_pred cccccc-ccCCCCCCEEEccc
Q 038551 117 TTLPIE-LKYLVNLKCLNLEY 136 (366)
Q Consensus 117 ~~l~~~-l~~l~~L~~L~l~~ 136 (366)
+.+|.. +..+++|++|++++
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCS
T ss_pred CEeCHHHhcCCCCCCEEEeCC
Confidence 433332 33444444444443
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=9.5e-11 Score=95.49 Aligned_cols=109 Identities=23% Similarity=0.220 Sum_probs=93.0
Q ss_pred eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCE
Q 038551 7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRV 84 (366)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~ 84 (366)
|.|. .+.+++.++++..+|.-. .++++.|++++|.++.+++. ..+++|++|++++|.+..+++.+|..+++|++
T Consensus 7 C~C~---~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 7 CSCS---GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp CEEE---TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCcC---CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 5553 457899999999997533 48999999999999998554 88999999999999999999988899999999
Q ss_pred EEccCCCCCCCcch-hhcCCCCCcEEEcccccccccc
Q 038551 85 LILSYNRSLENLPL-GIFNLVSLQHLDISWTGITTLP 120 (366)
Q Consensus 85 L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~ 120 (366)
|++++| .++.+|. .+..+++|++|++++|.+...+
T Consensus 83 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 83 LSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred EECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999999 6666665 5889999999999999887443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=3.3e-12 Score=106.94 Aligned_cols=127 Identities=22% Similarity=0.293 Sum_probs=98.8
Q ss_pred cccEEEcccC--CccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 038551 35 ETTRMSLMQN--AIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDI 111 (366)
Q Consensus 35 ~L~~L~l~~~--~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 111 (366)
.++...+.+. .++.++.. ..+++|++|++++|.+..++ . +..+++|++|++++| .++.+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCC-CcccccchhhcCCcCCEEEC
Confidence 4455555443 34444434 67889999999999888887 3 788999999999999 67788887777889999999
Q ss_pred cccccccccccccCCCCCCEEEcccccccCccCh-hhhcCCcCCcEEEeecCCccc
Q 038551 112 SWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQ-QVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 112 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 166 (366)
++|.++.+| .+..+++|++|++++ +.+..++. ..+..+++|++|++.+|.+..
T Consensus 101 ~~N~l~~l~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 101 SYNQIASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EEEECCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred cCCcCCcCC-ccccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 999988877 578889999999998 45665543 337788999999999998764
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=3.7e-10 Score=102.16 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=47.3
Q ss_pred CCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccC
Q 038551 33 WKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSY 89 (366)
Q Consensus 33 ~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~ 89 (366)
|++|+.|++.+ .++.++.. ..|++|+.+++..|.+..+++.+|..+.++..+....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 89999999988 88888765 7899999999999999888888888888887776655
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.04 E-value=8.5e-09 Score=95.64 Aligned_cols=237 Identities=11% Similarity=0.153 Sum_probs=115.3
Q ss_pred CcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEE
Q 038551 34 KETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLD 110 (366)
Q Consensus 34 ~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~ 110 (366)
..++.+.+.+ .++.++.. ..+ +|+.+.+..+ +..|+..+|..+ +|+.+.+..+ ++.++ .+|.++.+|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeee
Confidence 4455555532 34444333 333 5666666544 555666556554 4666666543 33333 3456666666666
Q ss_pred ccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcc
Q 038551 111 ISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKH 190 (366)
Q Consensus 111 l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 190 (366)
+..|.++.++...-...+|+.+.+.. .+..++...|.++++|+.+.+..+ +.. -....+.+ ..
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~-------------I~~~aF~~-~~ 249 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN-VST-------------IGQEAFRE-SG 249 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT-CCE-------------ECTTTTTT-CC
T ss_pred cCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC-ccC-------------cccccccc-CC
Confidence 66666666665433346666666653 255555555666666666666543 211 11111222 34
Q ss_pred cceeeeccccchhhHhHhhhcccCcccceeeeccccCC----CCCcchhhhccCCcCcEEEeccCccceEeccccccccc
Q 038551 191 LNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNN----SNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRI 266 (366)
Q Consensus 191 L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~----~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~ 266 (366)
|+.+.+.. ....++.- .+..+.+ |..+.+..... .....-.+|.+|++|+.+.+. +.++.++..++
T Consensus 250 L~~i~lp~-~i~~I~~~-aF~~c~~--L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF----- 319 (401)
T 4fdw_A 250 ITTVKLPN-GVTNIASR-AFYYCPE--LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLL----- 319 (401)
T ss_dssp CSEEEEET-TCCEECTT-TTTTCTT--CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTT-----
T ss_pred ccEEEeCC-CccEEChh-HhhCCCC--CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhh-----
Confidence 55555532 22222110 1122222 22233221110 011222346777888888877 34666665544
Q ss_pred cccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc
Q 038551 267 REICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK 313 (366)
Q Consensus 267 ~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~ 313 (366)
..+.+|+.+.+. .+++.+.- ..+... + |+.+.+.++.
T Consensus 320 ---~~c~~L~~l~lp-~~l~~I~~----~aF~~~-~-L~~l~l~~n~ 356 (401)
T 4fdw_A 320 ---GGNRKVTQLTIP-ANVTQINF----SAFNNT-G-IKEVKVEGTT 356 (401)
T ss_dssp ---TTCCSCCEEEEC-TTCCEECT----TSSSSS-C-CCEEEECCSS
T ss_pred ---cCCCCccEEEEC-ccccEEcH----HhCCCC-C-CCEEEEcCCC
Confidence 456777777663 12222211 112223 3 7888877664
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.03 E-value=1e-08 Score=95.11 Aligned_cols=215 Identities=13% Similarity=0.187 Sum_probs=126.7
Q ss_pred CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCC
Q 038551 29 SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSL 106 (366)
Q Consensus 29 ~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L 106 (366)
.+.++ +|+.+.+..+ ++.++.. .. .+|+.+.+.. .+..+...+|..|++|+.+++..| .++.++...-.+.+|
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGI 205 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeeccc
Confidence 45554 6888887655 6665544 33 3688887775 577777777888888888888777 566666443335777
Q ss_pred cEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhh
Q 038551 107 QHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEEL 185 (366)
Q Consensus 107 ~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (366)
+.+.+..+ ++.++.. +..+++|+.+++.. .+..++...|.+ .+|+.+.+.. .+.. .....+
T Consensus 206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~-~i~~-------------I~~~aF 267 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPN-GVTN-------------IASRAF 267 (401)
T ss_dssp SEEECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEET-TCCE-------------ECTTTT
T ss_pred CEEEeCCc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCC-CccE-------------EChhHh
Confidence 77777643 5555543 67777788777765 355666555655 5677777743 2322 223455
Q ss_pred hcCcccceeeeccccch-----hhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccc
Q 038551 186 LVLKHLNLLTITLQSFG-----ALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDA 260 (366)
Q Consensus 186 ~~l~~L~~L~l~~~~~~-----~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~ 260 (366)
..+++|+.+.+..+... .++. ..+..+.+ |..+.+.. .+....-.+|.+|++|+.+.+..+ ++.++..+
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~~-~aF~~c~~--L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIHP-YCLEGCPK--LARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEECT-TTTTTCTT--CCEECCCT--TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred hCCCCCCEEEeCCccccCCcccEECH-HHhhCCcc--CCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 56677777777654432 1111 01222222 33344432 233333344677777888877443 56665544
Q ss_pred cccccccccCCCCCcceeeee
Q 038551 261 GELKRIREICGFHSLQKVFYK 281 (366)
Q Consensus 261 ~~~~~~~~~~~~~~L~~L~l~ 281 (366)
+ ..+ +|+.+.+.
T Consensus 342 F--------~~~-~L~~l~l~ 353 (401)
T 4fdw_A 342 F--------NNT-GIKEVKVE 353 (401)
T ss_dssp S--------SSS-CCCEEEEC
T ss_pred C--------CCC-CCCEEEEc
Confidence 4 334 67777665
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=1.1e-09 Score=99.77 Aligned_cols=101 Identities=25% Similarity=0.204 Sum_probs=79.1
Q ss_pred EEEecCC-CcccCCCCCCCCcccEEEccc-CCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551 16 FLVLAGV-GLTEAPSIGMWKETTRMSLMQ-NAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91 (366)
Q Consensus 16 ~~~~~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 91 (366)
.+.+.++ ++..+|.+..+++|+.|++++ |.+..++.. ..+++|+.|++++|.+..+++..|..+++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N- 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN- 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-
Confidence 4578777 888887788888899999986 888887753 78888888888888888887777888888888888888
Q ss_pred CCCCcchhhcCCCCCcEEEccccccc
Q 038551 92 SLENLPLGIFNLVSLQHLDISWTGIT 117 (366)
Q Consensus 92 ~~~~l~~~~~~l~~L~~L~l~~~~~~ 117 (366)
.++.+|..+.....|++|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 66666654333334888888888776
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.96 E-value=2.4e-10 Score=104.99 Aligned_cols=158 Identities=17% Similarity=0.123 Sum_probs=79.4
Q ss_pred CcccEEEcccCCcccc-----CCC--CCCCCccEEEccCCCCcccc-chhhcCCCCCCEEEccCCCCCCCcc-----hhh
Q 038551 34 KETTRMSLMQNAIQNL-----TEI--PTCPRLRTLFLPSNHLGTVS-NNFFHSMASLRVLILSYNRSLENLP-----LGI 100 (366)
Q Consensus 34 ~~L~~L~l~~~~~~~l-----~~~--~~~~~L~~L~l~~~~~~~i~-~~~~~~l~~L~~L~l~~~~~~~~l~-----~~~ 100 (366)
+.|+.|++++|.+... ... ...++|+.|++++|.++... ..+...+++|+.|++++| .++... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 3466666666666541 111 13356666666666664321 111233456666666666 333211 112
Q ss_pred -cCCCCCcEEEcccccccc-----ccccccCCCCCCEEEcccccccCccC----hhhhcCCcCCcEEEeecCCccccccc
Q 038551 101 -FNLVSLQHLDISWTGITT-----LPIELKYLVNLKCLNLEYTFRLSRIP----QQVISDLKMLRALRMFECGFNVELEA 170 (366)
Q Consensus 101 -~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~ 170 (366)
...++|++|++++|.++. ++..+...++|++|++++|. ++... ...+...++|++|++.+|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~--- 226 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT--- 226 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH---
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH---
Confidence 234566666666666542 33344556666666666643 33211 11134455666666666666531
Q ss_pred cccccCCchhhhhhhhcCcccceeeeccccch
Q 038551 171 DSILFGDSEVLVEELLVLKHLNLLTITLQSFG 202 (366)
Q Consensus 171 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 202 (366)
....+...+...+.|+.|++++|.+.
T Consensus 227 ------g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 227 ------AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp ------HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred ------HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 01123344445566666666666554
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=3.1e-09 Score=96.69 Aligned_cols=100 Identities=19% Similarity=0.290 Sum_probs=67.5
Q ss_pred EEEcccC-CccccCCCCCCCCccEEEccC-CCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEcccc
Q 038551 38 RMSLMQN-AIQNLTEIPTCPRLRTLFLPS-NHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHLDISWT 114 (366)
Q Consensus 38 ~L~l~~~-~~~~l~~~~~~~~L~~L~l~~-~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~ 114 (366)
.++++++ .++.+|....+.+|+.|++++ |.+..+++..|..+++|++|+|++| .++.+ |..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 677776655666777777775 7777777666777777777777777 44444 445677777777777777
Q ss_pred ccccccccccCCCCCCEEEccccc
Q 038551 115 GITTLPIELKYLVNLKCLNLEYTF 138 (366)
Q Consensus 115 ~~~~l~~~l~~l~~L~~L~l~~~~ 138 (366)
.++.+|..+.....|+.|++.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 777776653333337777777643
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.88 E-value=3.3e-10 Score=104.14 Aligned_cols=152 Identities=25% Similarity=0.301 Sum_probs=111.2
Q ss_pred CccEEEecCCCcccCC------CCC-CCCcccEEEcccCCccc--cCCC-CCCCCccEEEccCCCCccccchhh-----c
Q 038551 13 KENFLVLAGVGLTEAP------SIG-MWKETTRMSLMQNAIQN--LTEI-PTCPRLRTLFLPSNHLGTVSNNFF-----H 77 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~~------~~~-~~~~L~~L~l~~~~~~~--l~~~-~~~~~L~~L~l~~~~~~~i~~~~~-----~ 77 (366)
..+.+++.++.+.... .+. ..++|+.|++++|.+.. +... ..+++|+.|++++|.++......+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 4556777777776531 122 23799999999999876 2222 456689999999999975433322 3
Q ss_pred CCCCCCEEEccCCCCCCC-----cchhhcCCCCCcEEEcccccccc-----ccccccCCCCCCEEEcccccccCccChh-
Q 038551 78 SMASLRVLILSYNRSLEN-----LPLGIFNLVSLQHLDISWTGITT-----LPIELKYLVNLKCLNLEYTFRLSRIPQQ- 146 (366)
Q Consensus 78 ~l~~L~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~~~~~~~~~- 146 (366)
..++|++|++++| .++. ++..+...++|++|++++|.++. ++..+...++|++|++++| .++.....
T Consensus 153 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~ 230 (372)
T 3un9_A 153 DQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALA 230 (372)
T ss_dssp TTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHH
T ss_pred cCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHH
Confidence 5789999999999 5543 45556788999999999999873 4556778889999999996 44432221
Q ss_pred ---hhcCCcCCcEEEeecCCccc
Q 038551 147 ---VISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 147 ---~~~~~~~L~~L~l~~~~~~~ 166 (366)
.+...++|++|++++|.+.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 14467899999999999986
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.54 E-value=3.1e-06 Score=78.21 Aligned_cols=103 Identities=13% Similarity=0.209 Sum_probs=60.1
Q ss_pred CCCCCC-cccEEEcccCCccccCCC--CCCCCccEEEccCC---CCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhc
Q 038551 29 SIGMWK-ETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSN---HLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIF 101 (366)
Q Consensus 29 ~~~~~~-~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~---~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~ 101 (366)
.+.++. .|+.+.+.. .++.+... ..|.+|+.+.+..+ .+..+...+|..|.+|+.+.+..+ ++.++ .++.
T Consensus 58 aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTT
T ss_pred hccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhh
Confidence 355553 477777753 36665544 67777887777654 355666666777777777666554 33333 3456
Q ss_pred CCCCCcEEEccccccccccc-cccCCCCCCEEEcc
Q 038551 102 NLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLE 135 (366)
Q Consensus 102 ~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~ 135 (366)
++.+|+.+.+..+ +..++. .+..+.+|+.+.+.
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred hhcccccccccce-eeeecccceeccccccccccc
Confidence 6666776666432 223322 24555556665554
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.49 E-value=5.2e-06 Score=76.72 Aligned_cols=126 Identities=12% Similarity=0.228 Sum_probs=67.6
Q ss_pred CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCC
Q 038551 29 SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVS 105 (366)
Q Consensus 29 ~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~ 105 (366)
.+.+|.+|+.+.+. +.++.++.. ..|.+|+.+++..+ +..++..+|..+.+|+.+.+..+ +..+. .+|.++..
T Consensus 66 AF~~c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 66 AFQGCRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTCTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTCCC
T ss_pred HhhCCCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeecccc
Confidence 36666777777775 335555444 56677777776543 55666666666766666655443 22221 22333322
Q ss_pred CcEEEcccccccccc-ccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecC
Q 038551 106 LQHLDISWTGITTLP-IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC 162 (366)
Q Consensus 106 L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (366)
+..... ..+..+. ..+..+++|+.+.+.. .+..++...+.++.+|+.+.+..+
T Consensus 142 ~~~~~~--~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 142 KEITIP--EGVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp SEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT
T ss_pred cccccC--ccccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC
Confidence 221111 1122222 2356677777777764 344555555667777777766544
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.40 E-value=2.5e-07 Score=84.35 Aligned_cols=178 Identities=15% Similarity=0.096 Sum_probs=104.5
Q ss_pred CCCCCccEEEccCCCCc----------cccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccc-cc
Q 038551 53 PTCPRLRTLFLPSNHLG----------TVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTL-PI 121 (366)
Q Consensus 53 ~~~~~L~~L~l~~~~~~----------~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l-~~ 121 (366)
..+++|+.|.+.+.... .+. .++..+++|+.|+++++... .++. + .+++|++|++..+.+..- ..
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 45667777777544221 122 34677899999999887322 3343 3 378899999988876521 11
Q ss_pred cc--cCCCCCCEEEcccc--cccC-----ccChhhh--cCCcCCcEEEeecCCccccccccccccCCchhhhhhh---hc
Q 038551 122 EL--KYLVNLKCLNLEYT--FRLS-----RIPQQVI--SDLKMLRALRMFECGFNVELEADSILFGDSEVLVEEL---LV 187 (366)
Q Consensus 122 ~l--~~l~~L~~L~l~~~--~~~~-----~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l---~~ 187 (366)
.+ ..+++|++|++..+ +..+ .+... + ..+++|+.|.+.+|.+.+ .....+ ..
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~~~~p~Lr~L~L~~~~i~~-------------~~~~~la~a~~ 277 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSKDRFPNLKWLGIVDAEEQN-------------VVVEMFLESDI 277 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SCTTTCTTCCEEEEESCTTHH-------------HHHHHHHHCSS
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHH-HhcCCCCCcCEEeCCCCCCch-------------HHHHHHHhCcc
Confidence 22 37889999988531 1111 11111 2 257899999999988874 222222 35
Q ss_pred Ccccceeeeccccchh--hHhHhh-hcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCc
Q 038551 188 LKHLNLLTITLQSFGA--LQRLLS-YCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFND 252 (366)
Q Consensus 188 l~~L~~L~l~~~~~~~--~~~l~~-~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 252 (366)
+++|+.|+++.|.+.. ...+.. +.++++ +..|+++.+ .+++..+..+...- ...++++.+.
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~--L~~L~L~~n-~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKH--LKFINMKYN-YLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTT--CSEEECCSB-BCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCc--ceEEECCCC-cCCHHHHHHHHHHc-CCEEEecCCc
Confidence 7899999999887764 222221 233344 555777654 35555444444311 3567777765
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.40 E-value=5.6e-06 Score=76.48 Aligned_cols=104 Identities=16% Similarity=0.222 Sum_probs=62.8
Q ss_pred CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccccccccccccccCCCCCCE
Q 038551 53 PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWTGITTLPIELKYLVNLKC 131 (366)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~ 131 (366)
..|.+|+.+.+..+ +..++..+|..+.+|+.+.+..+ ++.++ .++.++..|+.+.+..+.. .+........+|+.
T Consensus 159 ~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 159 ATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGVKN 234 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCCE
T ss_pred cccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce-EeehhhcccCCCce
Confidence 67778888887654 45667777888888888877665 33333 4466677777666654422 22223334456666
Q ss_pred EEcccccccCccChhhhcCCcCCcEEEeecC
Q 038551 132 LNLEYTFRLSRIPQQVISDLKMLRALRMFEC 162 (366)
Q Consensus 132 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (366)
+.+.. .+..+....+..+..++.+.+..+
T Consensus 235 i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 235 IIIPD--SFTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp EEECT--TCCEECSSTTTTCSSCCEEEECCT
T ss_pred EEECC--CceecccccccccccceeEEcCCC
Confidence 66653 334444444666677777766554
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=2.4e-06 Score=77.81 Aligned_cols=167 Identities=17% Similarity=0.125 Sum_probs=95.5
Q ss_pred hcCCCCCCEEEccCCCC---------CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChh
Q 038551 76 FHSMASLRVLILSYNRS---------LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQ 146 (366)
Q Consensus 76 ~~~l~~L~~L~l~~~~~---------~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~ 146 (366)
...+++|+.|.+..... ...+...+..+++|+.|.+.++.-..++. + .+++|++|++..|.........
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 45678888888865421 11244556778899999998873224444 3 3788999999875432222222
Q ss_pred hhc--CCcCCcEEEeecC--CccccccccccccCCchhhhhhh--hcCcccceeeeccccchh--hHhHhhhcccCcccc
Q 038551 147 VIS--DLKMLRALRMFEC--GFNVELEADSILFGDSEVLVEEL--LVLKHLNLLTITLQSFGA--LQRLLSYCRLGSIST 218 (366)
Q Consensus 147 ~~~--~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~--~~~l~~~~~l~~l~l 218 (366)
+. .+++|++|++..+ ...+. .........+ ..+++|+.|++..+.+.. ...+...+.++. +
T Consensus 213 -l~~~~lp~L~~L~L~~~~~~~~~~--------~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~--L 281 (362)
T 2ra8_A 213 -ILGSDLPNLEKLVLYVGVEDYGFD--------GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ--L 281 (362)
T ss_dssp -HHHSBCTTCCEEEEECBCGGGTCC--------SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGG--C
T ss_pred -HHHccCCCCcEEEEeccccccccc--------hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCC--C
Confidence 33 6889999988532 11110 0000111122 247889999998877653 223332233444 5
Q ss_pred eeeeccccCCCCCcchh----hhccCCcCcEEEeccCccceE
Q 038551 219 QCLCLRHLNNSNSLSVF----AFASLRHLRTLQLYFNDLEEL 256 (366)
Q Consensus 219 ~~L~~~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~l 256 (366)
+.|+++. +.+...... .+..+++|+.|+++.|.+++.
T Consensus 282 ~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 282 ETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp SEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 5566643 344443322 234568899999988876643
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.34 E-value=1.5e-05 Score=73.55 Aligned_cols=80 Identities=11% Similarity=0.212 Sum_probs=33.2
Q ss_pred CCCCCcccEEEcccC---CccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCC
Q 038551 30 IGMWKETTRMSLMQN---AIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNL 103 (366)
Q Consensus 30 ~~~~~~L~~L~l~~~---~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l 103 (366)
+.+|.+|+.+.+..+ .++.+... ..|.+|+.+.+..+ +..+...+|..+.+|+.+.+..+ ...++ ..+.++
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c 159 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYC 159 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTC
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce--eeeecccceecc
Confidence 444455555554433 23333322 34444444443332 33444444444555555554432 22222 223444
Q ss_pred CCCcEEEcc
Q 038551 104 VSLQHLDIS 112 (366)
Q Consensus 104 ~~L~~L~l~ 112 (366)
..|+.+.+.
T Consensus 160 ~~L~~i~~~ 168 (394)
T 4gt6_A 160 YSLHTVTLP 168 (394)
T ss_dssp TTCCEEECC
T ss_pred ccccccccc
Confidence 445444443
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=8.9e-07 Score=72.78 Aligned_cols=46 Identities=13% Similarity=0.026 Sum_probs=23.7
Q ss_pred hcCCcCCcEEEe--ecCCccccccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551 148 ISDLKMLRALRM--FECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG 202 (366)
Q Consensus 148 ~~~~~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 202 (366)
+...++|++|++ .+|.+... +...+...+...+.|+.|++++|.+.
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~---------g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNN---------VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHH---------HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCceEEEecCCCCCCCHH---------HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 334455666666 55555531 01123444455566666666666554
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=1.1e-06 Score=70.99 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=32.9
Q ss_pred cceeeeccccCCCCCcchhhhccCCcCcEEEeccC-ccceE
Q 038551 217 STQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN-DLEEL 256 (366)
Q Consensus 217 ~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~l 256 (366)
+++.|+++.|..+++..+..+..+++|++|++++| .+++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 36668888888888888888888999999999998 77754
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.22 E-value=1.7e-06 Score=71.03 Aligned_cols=111 Identities=12% Similarity=0.062 Sum_probs=77.0
Q ss_pred CCCCCccEEEccCC-CCcc-----ccchhhcCCCCCCEEEccCCCCCCC-----cchhhcCCCCCcEEEccccccc----
Q 038551 53 PTCPRLRTLFLPSN-HLGT-----VSNNFFHSMASLRVLILSYNRSLEN-----LPLGIFNLVSLQHLDISWTGIT---- 117 (366)
Q Consensus 53 ~~~~~L~~L~l~~~-~~~~-----i~~~~~~~l~~L~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~---- 117 (366)
...+.|++|++++| .++. +.. .+...++|++|++++| .++. +...+...+.|++|++++|.++
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 56778888888887 7753 222 2566788888888888 4442 3444556678888888888886
Q ss_pred -cccccccCCCCCCEEEc--ccccccCccCh----hhhcCCcCCcEEEeecCCccc
Q 038551 118 -TLPIELKYLVNLKCLNL--EYTFRLSRIPQ----QVISDLKMLRALRMFECGFNV 166 (366)
Q Consensus 118 -~l~~~l~~l~~L~~L~l--~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~ 166 (366)
.+...+...++|++|++ .+| .++.... ..+...++|++|++.+|.+..
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 25556777888999999 664 4443221 124566889999999998764
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=7e-06 Score=66.18 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=26.9
Q ss_pred CCcEEEccccccccc-cccccCCCCCCEEEcccccccCccChhhhcCC----cCCcEEEeecCC
Q 038551 105 SLQHLDISWTGITTL-PIELKYLVNLKCLNLEYTFRLSRIPQQVISDL----KMLRALRMFECG 163 (366)
Q Consensus 105 ~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~ 163 (366)
+|++||+++|.++.. -..+..+++|++|++++|..+++.....+..+ ++|++|++++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 455555555544311 11234555555555555554444332223332 245555555553
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.93 E-value=0.0014 Score=59.88 Aligned_cols=127 Identities=10% Similarity=0.133 Sum_probs=77.6
Q ss_pred CCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcch-hhcCC
Q 038551 27 APSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPL-GIFNL 103 (366)
Q Consensus 27 ~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l 103 (366)
.|.+....+|+.+.+. ..++.++.. ..|.+|+.+.+.. .+..|...+|..+ +|+.+.+..+ ++.++. +|..
T Consensus 39 ~~~~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~- 112 (379)
T 4h09_A 39 IPWYKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQG- 112 (379)
T ss_dssp STTGGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTT-
T ss_pred ccccccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce--eeEeccceecc-
Confidence 3555666788888885 456666655 7788899888865 4777888878877 5777766554 444443 3433
Q ss_pred CCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecC
Q 038551 104 VSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC 162 (366)
Q Consensus 104 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (366)
.+|+.+.+..+ ++.+....-.-.+|+.+.+.. .+..+....+..+..++.+.+...
T Consensus 113 ~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 113 TDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTT
T ss_pred CCcccccCCCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccccc
Confidence 47888877654 333333222223566665543 344444444666777777766544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=2.8e-06 Score=73.62 Aligned_cols=102 Identities=18% Similarity=0.107 Sum_probs=65.8
Q ss_pred CCCccE--EEccCCCCccccc---hhhcCCCCCCEEEccCCCCCCC---cchhhcCCCCCcEEEccccccccccccccCC
Q 038551 55 CPRLRT--LFLPSNHLGTVSN---NFFHSMASLRVLILSYNRSLEN---LPLGIFNLVSLQHLDISWTGITTLPIELKYL 126 (366)
Q Consensus 55 ~~~L~~--L~l~~~~~~~i~~---~~~~~l~~L~~L~l~~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l 126 (366)
.+.|.. ++++.|....++. .+...+++|+.|+|++| .++. +|..+..+++|++|+|++|.++.+.. +..+
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l 217 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKI 217 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGG
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhc
Confidence 344444 4555554333322 22356888999999998 4454 34556788899999999998886632 3333
Q ss_pred C--CCCEEEcccccccCccCh------hhhcCCcCCcEEE
Q 038551 127 V--NLKCLNLEYTFRLSRIPQ------QVISDLKMLRALR 158 (366)
Q Consensus 127 ~--~L~~L~l~~~~~~~~~~~------~~~~~~~~L~~L~ 158 (366)
. +|++|++.+|+..+.+|. .++..+++|+.|+
T Consensus 218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3 899999998765554441 2366788888775
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.75 E-value=3.2e-05 Score=66.95 Aligned_cols=112 Identities=19% Similarity=0.097 Sum_probs=71.7
Q ss_pred hcCCCCCCE--EEccCCCCCCCcchh----hcCCCCCcEEEcccccccccc---ccccCCCCCCEEEcccccccCccChh
Q 038551 76 FHSMASLRV--LILSYNRSLENLPLG----IFNLVSLQHLDISWTGITTLP---IELKYLVNLKCLNLEYTFRLSRIPQQ 146 (366)
Q Consensus 76 ~~~l~~L~~--L~l~~~~~~~~l~~~----~~~l~~L~~L~l~~~~~~~l~---~~l~~l~~L~~L~l~~~~~~~~~~~~ 146 (366)
++..+.|.. ++++.| ....++.. ..++++|+.|+|++|.++.++ ..+..+++|+.|++++ |.+..+..
T Consensus 137 l~~dp~L~~~~l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~- 213 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLN-RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERE- 213 (267)
T ss_dssp GGGCHHHHHTTCCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGG-
T ss_pred cCCCcchhhcCccccCC-HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchh-
Confidence 444444544 456666 33333332 246889999999999988654 4567899999999999 55665532
Q ss_pred hhcCCc--CCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeec
Q 038551 147 VISDLK--MLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTIT 197 (366)
Q Consensus 147 ~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 197 (366)
+..+. +|++|.+.+|.+.+.. + ....-....+..+++|+.|+-.
T Consensus 214 -l~~l~~l~L~~L~L~~Npl~~~~--~----~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 214 -LDKIKGLKLEELWLDGNSLCDTF--R----DQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp -GGGGTTSCCSEEECTTSTTGGGC--S----SHHHHHHHHHHHCTTCCEESSC
T ss_pred -hhhcccCCcceEEccCCcCcccc--C----cchhHHHHHHHHCcccCeECCc
Confidence 34343 8999999999987410 0 0001223456777888887754
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.47 E-value=0.0015 Score=59.69 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=54.1
Q ss_pred CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccccccccccc-cccCCCCCC
Q 038551 53 PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWTGITTLPI-ELKYLVNLK 130 (366)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~ 130 (366)
..+..|+.+.+..+ +..+...+|..+..|+.+.+..+ ++.+. .++.++.+|+.+.+.. .++.++. .+..+.+|+
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 44555555555432 44444444556666666666544 33332 3345555666665543 2334433 255566666
Q ss_pred EEEcccccccCccChhhhcCCcCCcEEEeec
Q 038551 131 CLNLEYTFRLSRIPQQVISDLKMLRALRMFE 161 (366)
Q Consensus 131 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (366)
.+.+.. +.+..++...|.++.+|+.+.+..
T Consensus 290 ~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 290 KVVMDN-SAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp EEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred cccccc-cccceehhhhhcCCCCCCEEEcCc
Confidence 666654 345555554566666666666643
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.61 E-value=0.0036 Score=51.25 Aligned_cols=115 Identities=12% Similarity=0.057 Sum_probs=55.8
Q ss_pred CCCCCCEEEccCCCCCC-----CcchhhcCCCCCcEEEccccccc-----cccccccCCCCCCEEEcccccccCccChh-
Q 038551 78 SMASLRVLILSYNRSLE-----NLPLGIFNLVSLQHLDISWTGIT-----TLPIELKYLVNLKCLNLEYTFRLSRIPQQ- 146 (366)
Q Consensus 78 ~l~~L~~L~l~~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~- 146 (366)
.-+.|+.|+|+++..++ .+..++..-..|+.|+|++|.+. .+...+..-+.|++|+++.| .++.-...
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHH
Confidence 34455555555531222 12333444455666666666554 23333444456666666663 33332211
Q ss_pred ---hhcCCcCCcEEEeecC---CccccccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551 147 ---VISDLKMLRALRMFEC---GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG 202 (366)
Q Consensus 147 ---~~~~~~~L~~L~l~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 202 (366)
.+..-+.|++|++.++ .+... ....+.+.+..-+.|..|++..+...
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~---------g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQ---------VEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHH---------HHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHH---------HHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 1334455777777543 23320 01234555666667777777655443
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.22 E-value=0.0092 Score=45.41 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=23.8
Q ss_pred CccEEEccCCCCccccchhhcCCCCCCEEEccCC
Q 038551 57 RLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN 90 (366)
Q Consensus 57 ~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~ 90 (366)
+|+.|++++|.|+.++.++|..+++|+.|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4666677777776666666777777777777776
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.18 E-value=0.0094 Score=48.76 Aligned_cols=112 Identities=11% Similarity=-0.002 Sum_probs=74.2
Q ss_pred CCCCCccEEEccCC-CCccc----cchhhcCCCCCCEEEccCCCCCC-----CcchhhcCCCCCcEEEccccccc-----
Q 038551 53 PTCPRLRTLFLPSN-HLGTV----SNNFFHSMASLRVLILSYNRSLE-----NLPLGIFNLVSLQHLDISWTGIT----- 117 (366)
Q Consensus 53 ~~~~~L~~L~l~~~-~~~~i----~~~~~~~l~~L~~L~l~~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~----- 117 (366)
..-+.|+.|+++++ .|+.- -..++..-..|+.|+|++| .++ .+...+..-+.|++|+|++|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 45677888888875 77531 1223556678999999888 554 34445555678999999999887
Q ss_pred cccccccCCCCCCEEEccccc--ccCccC----hhhhcCCcCCcEEEeecCCcc
Q 038551 118 TLPIELKYLVNLKCLNLEYTF--RLSRIP----QQVISDLKMLRALRMFECGFN 165 (366)
Q Consensus 118 ~l~~~l~~l~~L~~L~l~~~~--~~~~~~----~~~~~~~~~L~~L~l~~~~~~ 165 (366)
.+...+..-+.|++|+++++. .++.-. ...+..-+.|++|++..+.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 344456666789999998631 233211 112456678999998876654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.85 E-value=0.013 Score=44.65 Aligned_cols=59 Identities=25% Similarity=0.242 Sum_probs=47.8
Q ss_pred eccCcCCccEEEecCCCcc--cCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCc
Q 038551 7 STINKEKENFLVLAGVGLT--EAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLG 69 (366)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~ 69 (366)
|.|. ...+++.++++. .+|.-. .++|+.|++++|.++.++.. ..+++|+.|++.+|.+.
T Consensus 6 C~C~---~~~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 6 CSCA---GTLVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CEEE---TTEEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEc---CCEEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5554 358899999998 887422 25799999999999999876 78899999999999773
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=63.57 E-value=8 Score=27.31 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=24.6
Q ss_pred CCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccc
Q 038551 67 HLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISW 113 (366)
Q Consensus 67 ~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~ 113 (366)
.+..|...+|..|.+|+.+.+..+ ++.+. .+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 445555566666666666666554 33332 3355555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.81 E-value=18 Score=25.43 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=25.6
Q ss_pred CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCC
Q 038551 53 PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN 90 (366)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~ 90 (366)
..|..|+.+.+-.+ +..|...+|..|.+|+.+.+...
T Consensus 17 ~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 17 AGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 56667777766653 55666666888888888877654
Done!