Query 038552
Match_columns 659
No_of_seqs 541 out of 5244
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 21:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.1E-62 1.7E-66 546.7 40.0 485 4-500 197-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 2E-58 6.9E-63 517.5 35.8 475 4-489 148-721 (768)
3 3t6q_A CD180 antigen; protein- 100.0 4.8E-53 1.6E-57 464.1 36.8 469 7-486 33-562 (606)
4 3t6q_A CD180 antigen; protein- 100.0 4.2E-52 1.4E-56 456.6 40.5 454 2-466 52-565 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-51 5.1E-56 458.3 40.4 478 2-487 44-625 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-51 5.4E-56 452.0 35.6 469 7-487 32-561 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 7.2E-51 2.5E-55 461.0 30.4 471 6-487 23-563 (844)
8 3vq2_A TLR4, TOLL-like recepto 100.0 9.2E-50 3.2E-54 438.0 35.3 446 2-467 51-564 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 6.1E-49 2.1E-53 437.3 40.5 466 7-482 25-571 (680)
10 2z63_A TOLL-like receptor 4, v 100.0 4.7E-49 1.6E-53 429.6 30.5 448 7-466 28-536 (570)
11 2z63_A TOLL-like receptor 4, v 100.0 9.7E-47 3.3E-51 411.3 35.0 457 9-486 9-533 (570)
12 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-47 1.4E-51 430.3 33.0 446 2-467 43-566 (844)
13 4eco_A Uncharacterized protein 100.0 2.1E-48 7.1E-53 426.3 17.5 433 8-462 82-601 (636)
14 2z81_A CD282 antigen, TOLL-lik 100.0 3.5E-46 1.2E-50 404.6 31.3 465 7-486 26-512 (549)
15 2z7x_B TOLL-like receptor 1, v 100.0 6.8E-46 2.3E-50 399.3 26.4 437 11-465 4-485 (520)
16 4ecn_A Leucine-rich repeat pro 100.0 6.3E-46 2.2E-50 412.1 26.3 411 7-463 323-842 (876)
17 4eco_A Uncharacterized protein 100.0 1.8E-46 6.3E-51 410.8 19.9 435 31-487 81-603 (636)
18 2z81_A CD282 antigen, TOLL-lik 100.0 4.1E-45 1.4E-49 396.3 25.0 449 2-466 45-515 (549)
19 4ecn_A Leucine-rich repeat pro 100.0 5.1E-45 1.7E-49 404.9 23.8 440 31-485 323-841 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-44 8.5E-49 387.1 24.8 432 34-486 3-483 (520)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.7E-43 1.9E-47 379.5 27.0 437 6-466 30-515 (562)
22 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-41 6.6E-46 374.8 34.2 468 8-487 53-583 (635)
23 4g8a_A TOLL-like receptor 4; l 100.0 2.2E-40 7.5E-45 366.3 36.3 453 11-483 35-554 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.6E-41 1.9E-45 363.8 27.0 433 29-486 29-512 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 1.5E-39 5.1E-44 344.0 32.3 393 10-467 13-414 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 6.9E-40 2.4E-44 346.5 28.5 383 34-487 13-411 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 9.7E-39 3.3E-43 334.1 26.9 404 5-485 9-430 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 1.1E-37 3.8E-42 326.1 26.7 385 29-484 9-409 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 8.7E-37 3E-41 324.5 25.3 348 106-489 14-361 (477)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2.5E-36 8.4E-41 316.2 28.0 360 23-467 34-393 (457)
31 1o6v_A Internalin A; bacterial 100.0 1.4E-35 4.7E-40 313.6 33.4 346 30-439 45-390 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-36 5.7E-41 317.5 24.6 358 3-445 38-395 (457)
33 1o6v_A Internalin A; bacterial 100.0 3E-35 1E-39 310.9 32.2 348 52-463 43-390 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 1E-34 3.4E-39 308.6 27.7 322 9-341 13-334 (477)
35 1ogq_A PGIP-2, polygalacturona 100.0 3.3E-34 1.1E-38 285.7 18.5 254 232-488 51-308 (313)
36 3o6n_A APL1; leucine-rich repe 100.0 4.2E-33 1.4E-37 287.8 26.9 309 31-438 45-353 (390)
37 3oja_B Anopheles plasmodium-re 100.0 3.2E-33 1.1E-37 304.3 24.8 338 102-491 50-387 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 6.9E-33 2.4E-37 286.1 24.8 335 101-487 43-377 (390)
39 4fmz_A Internalin; leucine ric 100.0 6.1E-32 2.1E-36 274.7 29.8 307 99-461 40-346 (347)
40 3oja_B Anopheles plasmodium-re 100.0 2.9E-32 9.9E-37 296.8 26.4 309 31-414 51-359 (597)
41 4fmz_A Internalin; leucine ric 100.0 1E-31 3.5E-36 273.0 28.0 305 29-365 42-346 (347)
42 1ogq_A PGIP-2, polygalacturona 100.0 1E-32 3.4E-37 274.9 17.7 255 206-465 50-308 (313)
43 1z7x_W Ribonuclease inhibitor; 100.0 4.5E-35 1.5E-39 310.3 -1.4 386 55-462 3-441 (461)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-34 3.6E-39 307.4 -5.0 395 6-443 2-446 (461)
45 1xku_A Decorin; proteoglycan, 100.0 3.5E-30 1.2E-34 259.5 27.1 288 32-362 32-329 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 4.7E-30 1.6E-34 258.6 27.7 288 104-459 34-331 (332)
47 2ft3_A Biglycan; proteoglycan, 100.0 3.4E-30 1.1E-34 259.7 23.3 288 32-363 34-331 (332)
48 1xku_A Decorin; proteoglycan, 100.0 4E-29 1.4E-33 251.7 29.6 289 8-338 32-330 (330)
49 3ogk_B Coronatine-insensitive 100.0 3.2E-31 1.1E-35 290.0 0.1 427 24-458 66-548 (592)
50 3ogk_B Coronatine-insensitive 100.0 4.8E-31 1.7E-35 288.6 0.6 408 46-463 64-528 (592)
51 2z66_A Variable lymphocyte rec 100.0 1.9E-28 6.5E-33 244.0 15.8 256 232-489 29-292 (306)
52 4fcg_A Uncharacterized protein 100.0 1.2E-27 4.2E-32 239.5 20.0 224 232-461 82-314 (328)
53 1ozn_A Reticulon 4 receptor; N 100.0 8.5E-28 2.9E-32 236.6 18.2 233 255-488 32-265 (285)
54 2z80_A TOLL-like receptor 2, v 100.0 5.5E-28 1.9E-32 245.7 16.0 282 29-343 29-317 (353)
55 3zyi_A Leucine-rich repeat-con 100.0 4.2E-27 1.4E-31 247.5 22.9 251 209-466 57-308 (452)
56 3zyj_A Leucine-rich repeat-con 100.0 6.2E-27 2.1E-31 245.3 23.4 251 209-466 46-297 (440)
57 2z80_A TOLL-like receptor 2, v 99.9 9.9E-28 3.4E-32 243.8 15.5 281 151-466 30-319 (353)
58 4fcg_A Uncharacterized protein 99.9 5.4E-27 1.8E-31 234.8 19.7 226 206-438 81-315 (328)
59 1ozn_A Reticulon 4 receptor; N 99.9 5.7E-27 2E-31 230.6 18.5 252 210-467 15-267 (285)
60 2z66_A Variable lymphocyte rec 99.9 6.1E-27 2.1E-31 233.1 17.7 277 155-467 10-293 (306)
61 3zyi_A Leucine-rich repeat-con 99.9 3.7E-26 1.3E-30 240.3 23.1 250 232-487 55-306 (452)
62 2p1m_B Transport inhibitor res 99.9 5.9E-30 2E-34 280.1 -6.6 397 29-460 103-543 (594)
63 3zyj_A Leucine-rich repeat-con 99.9 5.4E-26 1.9E-30 238.2 22.4 250 232-487 44-295 (440)
64 1wwl_A Monocyte differentiatio 99.9 4.8E-28 1.6E-32 241.3 6.2 246 205-462 42-310 (312)
65 2p1m_B Transport inhibitor res 99.9 1.1E-28 3.6E-33 270.2 -3.5 373 77-461 103-519 (594)
66 3oja_A Leucine-rich immune mol 99.9 2.2E-26 7.6E-31 243.0 11.4 215 232-461 35-250 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.9 8E-24 2.7E-28 227.7 29.5 268 32-351 41-308 (622)
68 3o53_A Protein LRIM1, AGAP0063 99.9 2E-26 6.9E-31 230.1 8.5 193 251-456 76-270 (317)
69 1wwl_A Monocyte differentiatio 99.9 1.2E-26 4.1E-31 231.2 6.4 224 208-439 65-311 (312)
70 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-26 4.9E-31 231.1 6.9 267 8-320 11-280 (317)
71 3g06_A SSPH2 (leucine-rich rep 99.9 4E-24 1.4E-28 230.0 26.0 207 206-447 101-307 (622)
72 2z62_A TOLL-like receptor 4, v 99.9 9.7E-25 3.3E-29 213.6 18.2 211 255-467 28-243 (276)
73 3oja_A Leucine-rich immune mol 99.9 5.6E-25 1.9E-29 232.3 13.8 222 253-488 32-254 (487)
74 2o6q_A Variable lymphocyte rec 99.9 2E-23 6.7E-28 203.3 22.4 206 257-466 18-223 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 2E-23 6.8E-28 204.2 18.7 207 232-440 29-240 (276)
76 1p9a_G Platelet glycoprotein I 99.9 5.3E-23 1.8E-27 201.8 19.4 206 251-464 6-211 (290)
77 1p9a_G Platelet glycoprotein I 99.9 8.3E-23 2.9E-27 200.4 20.2 206 274-486 5-210 (290)
78 2o6q_A Variable lymphocyte rec 99.9 1.9E-22 6.6E-27 196.3 22.2 202 234-439 19-220 (270)
79 3rfs_A Internalin B, repeat mo 99.9 2.3E-23 7.9E-28 202.9 14.9 209 28-255 38-246 (272)
80 3rfs_A Internalin B, repeat mo 99.9 6.5E-23 2.2E-27 199.8 16.6 205 251-467 37-241 (272)
81 4glp_A Monocyte differentiatio 99.9 1.4E-22 4.7E-27 201.7 13.3 227 206-461 64-307 (310)
82 2ca6_A RAN GTPase-activating p 99.9 6.1E-24 2.1E-28 218.7 3.4 212 251-463 56-318 (386)
83 4glp_A Monocyte differentiatio 99.9 1.2E-21 4E-26 194.9 18.1 231 176-438 64-308 (310)
84 3goz_A Leucine-rich repeat-con 99.9 2.7E-23 9.3E-28 211.5 6.0 231 232-463 23-299 (362)
85 3m19_A Variable lymphocyte rec 99.9 2.6E-21 8.8E-26 186.1 19.0 180 256-463 15-194 (251)
86 2ast_B S-phase kinase-associat 99.9 4.8E-23 1.6E-27 208.1 6.8 251 208-467 49-312 (336)
87 2ca6_A RAN GTPase-activating p 99.9 5E-23 1.7E-27 211.9 5.8 251 22-295 23-319 (386)
88 3goz_A Leucine-rich repeat-con 99.9 1.3E-22 4.4E-27 206.5 7.9 105 12-116 3-122 (362)
89 2ast_B S-phase kinase-associat 99.9 3.8E-22 1.3E-26 201.4 10.6 254 9-301 49-315 (336)
90 2xwt_C Thyrotropin receptor; s 99.9 1.3E-21 4.3E-26 186.9 12.5 196 256-481 32-236 (239)
91 1h6u_A Internalin H; cell adhe 99.9 5.7E-21 1.9E-25 189.3 17.0 194 252-462 38-231 (308)
92 3m19_A Variable lymphocyte rec 99.9 1.1E-20 3.9E-25 181.6 18.6 178 8-189 15-192 (251)
93 2xwt_C Thyrotropin receptor; s 99.9 5E-21 1.7E-25 182.7 15.4 196 32-241 32-236 (239)
94 1h6u_A Internalin H; cell adhe 99.8 6.4E-20 2.2E-24 181.8 19.8 191 232-439 42-232 (308)
95 2o6s_A Variable lymphocyte rec 99.8 2.5E-19 8.7E-24 166.9 14.2 156 279-466 28-183 (208)
96 2o6s_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 165.8 14.5 181 234-449 10-190 (208)
97 4ay9_X Follicle-stimulating ho 99.8 5.4E-19 1.8E-23 178.8 15.9 104 232-335 31-136 (350)
98 4ay9_X Follicle-stimulating ho 99.8 4.2E-19 1.4E-23 179.5 14.7 244 234-486 12-260 (350)
99 3cvr_A Invasion plasmid antige 99.8 8.7E-19 3E-23 186.1 17.6 187 232-447 60-253 (571)
100 3cvr_A Invasion plasmid antige 99.8 8.1E-19 2.8E-23 186.3 17.3 181 256-465 60-247 (571)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 2.2E-19 7.5E-24 168.3 11.5 157 282-466 14-171 (220)
102 2v9t_B SLIT homolog 2 protein 99.8 3E-19 1E-23 167.4 11.6 156 282-465 14-169 (220)
103 2xot_A Amphoterin-induced prot 99.8 1.3E-18 4.6E-23 176.5 14.7 180 258-465 21-206 (361)
104 1h6t_A Internalin B; cell adhe 99.8 3.6E-18 1.2E-22 167.5 14.8 172 251-461 42-213 (291)
105 1h6t_A Internalin B; cell adhe 99.8 3.2E-18 1.1E-22 167.9 13.2 169 232-439 47-215 (291)
106 3e6j_A Variable lymphocyte rec 99.8 9.6E-18 3.3E-22 158.3 15.7 156 281-465 21-176 (229)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 1.5E-17 5.1E-22 155.8 16.5 156 258-441 14-170 (220)
108 1m9s_A Internalin B; cell inva 99.7 2.8E-18 9.5E-23 184.5 12.2 188 235-439 25-212 (605)
109 2v9t_B SLIT homolog 2 protein 99.7 1.7E-17 5.7E-22 155.5 16.1 154 258-439 14-167 (220)
110 1m9s_A Internalin B; cell inva 99.7 1.3E-17 4.5E-22 179.2 16.8 167 232-413 44-210 (605)
111 3e6j_A Variable lymphocyte rec 99.7 3.7E-17 1.3E-21 154.3 16.4 153 33-190 21-173 (229)
112 2xot_A Amphoterin-induced prot 99.7 1.2E-17 4.2E-22 169.4 12.8 178 233-438 20-203 (361)
113 1w8a_A SLIT protein; signaling 99.7 7E-18 2.4E-22 154.5 9.6 133 356-488 33-166 (192)
114 4ezg_A Putative uncharacterize 99.7 2.3E-17 7.9E-22 151.9 13.2 154 28-190 41-195 (197)
115 4ezg_A Putative uncharacterize 99.7 3.8E-17 1.3E-21 150.5 14.0 154 51-219 40-194 (197)
116 1xeu_A Internalin C; cellular 99.7 2.6E-17 9.1E-22 158.7 8.2 169 255-439 19-187 (263)
117 1dce_A Protein (RAB geranylger 99.7 5.8E-19 2E-23 188.7 -4.3 191 252-466 346-551 (567)
118 1xeu_A Internalin C; cellular 99.7 3.2E-17 1.1E-21 158.1 8.1 171 277-463 17-187 (263)
119 1dce_A Protein (RAB geranylger 99.7 1.3E-18 4.3E-23 186.1 -3.3 180 3-190 345-547 (567)
120 3sb4_A Hypothetical leucine ri 99.7 9.6E-17 3.3E-21 160.8 9.1 100 232-333 227-327 (329)
121 4b8c_D Glucose-repressible alc 99.7 9E-17 3.1E-21 177.4 9.5 180 223-413 217-404 (727)
122 2wfh_A SLIT homolog 2 protein 99.7 2.4E-16 8.3E-21 144.0 9.7 110 356-466 35-144 (193)
123 1w8a_A SLIT protein; signaling 99.6 9.3E-16 3.2E-20 140.3 13.1 154 328-486 30-185 (192)
124 2ell_A Acidic leucine-rich nuc 99.6 1.8E-15 6E-20 135.4 11.8 133 327-462 24-161 (168)
125 3sb4_A Hypothetical leucine ri 99.6 1.2E-15 3.9E-20 152.9 11.6 265 175-461 24-310 (329)
126 4b8c_D Glucose-repressible alc 99.6 2.1E-16 7.2E-21 174.4 6.7 146 94-250 215-360 (727)
127 2ell_A Acidic leucine-rich nuc 99.6 2.9E-15 9.7E-20 134.0 11.7 132 31-165 24-160 (168)
128 2o6r_A Variable lymphocyte rec 99.6 4.4E-15 1.5E-19 134.1 12.0 111 356-466 32-142 (177)
129 2je0_A Acidic leucine-rich nuc 99.6 1.8E-15 6.1E-20 132.4 8.7 128 303-457 17-149 (149)
130 4fdw_A Leucine rich hypothetic 99.6 9.1E-14 3.1E-18 141.9 22.5 271 29-339 111-382 (401)
131 4fs7_A Uncharacterized protein 99.6 7.1E-14 2.4E-18 143.6 21.0 332 46-429 62-393 (394)
132 4fs7_A Uncharacterized protein 99.6 5.6E-14 1.9E-18 144.4 19.9 326 2-354 66-391 (394)
133 2je0_A Acidic leucine-rich nuc 99.6 3.9E-15 1.3E-19 130.2 9.6 84 31-116 17-101 (149)
134 4fdw_A Leucine rich hypothetic 99.6 1.1E-13 3.7E-18 141.3 21.3 271 6-316 112-383 (401)
135 2wfh_A SLIT homolog 2 protein 99.6 3.9E-14 1.3E-18 129.3 13.9 110 328-439 32-141 (193)
136 2o6r_A Variable lymphocyte rec 99.5 7.3E-14 2.5E-18 126.0 13.7 133 281-441 9-141 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.5 3.4E-14 1.2E-18 128.0 9.4 134 26-165 14-153 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.5 6.2E-14 2.1E-18 126.2 9.9 103 356-462 46-154 (176)
139 3g39_A Variable lymphocyte rec 99.5 1.7E-13 5.9E-18 122.2 10.9 108 356-466 13-120 (170)
140 1ds9_A Outer arm dynein; leuci 99.5 6.4E-16 2.2E-20 142.3 -5.2 153 277-461 16-185 (198)
141 1ds9_A Outer arm dynein; leuci 99.5 6.7E-16 2.3E-20 142.2 -5.5 154 28-189 15-185 (198)
142 2r9u_A Variable lymphocyte rec 99.4 3.7E-13 1.3E-17 120.4 10.9 107 356-465 16-122 (174)
143 4gt6_A Cell surface protein; l 99.4 1.4E-11 4.9E-16 126.3 23.1 331 48-436 56-390 (394)
144 4gt6_A Cell surface protein; l 99.4 4.6E-11 1.6E-15 122.6 24.6 335 20-412 52-390 (394)
145 3g39_A Variable lymphocyte rec 99.4 2.3E-12 7.8E-17 114.9 11.6 107 8-117 10-116 (170)
146 2r9u_A Variable lymphocyte rec 99.4 4.4E-12 1.5E-16 113.4 12.0 104 10-116 15-118 (174)
147 3un9_A NLR family member X1; l 99.3 6.6E-13 2.3E-17 134.2 0.8 160 278-462 71-253 (372)
148 3un9_A NLR family member X1; l 99.2 6.5E-13 2.2E-17 134.2 -0.2 159 31-190 72-253 (372)
149 2ifg_A High affinity nerve gro 99.2 2.1E-11 7.3E-16 122.9 10.1 107 356-465 12-120 (347)
150 2ifg_A High affinity nerve gro 99.1 1E-10 3.5E-15 117.9 9.6 103 11-116 12-116 (347)
151 4h09_A Hypothetical leucine ri 99.1 1.1E-08 3.9E-13 104.2 22.0 146 273-448 211-356 (379)
152 4h09_A Hypothetical leucine ri 99.0 2.3E-08 7.9E-13 101.9 22.8 290 27-337 42-343 (379)
153 2ra8_A Uncharacterized protein 98.9 8.6E-10 3E-14 110.2 5.8 84 374-459 250-341 (362)
154 2ra8_A Uncharacterized protein 98.9 1.3E-09 4.3E-14 109.1 6.1 182 25-217 133-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 3.8E-08 1.3E-12 88.6 3.0 117 24-141 29-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 5.2E-08 1.8E-12 87.7 2.0 120 321-461 30-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 8.1E-08 2.8E-12 90.7 3.2 80 373-454 167-257 (267)
158 3rw6_A Nuclear RNA export fact 98.3 7.9E-08 2.7E-12 90.8 0.4 81 52-134 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.2 5.6E-07 1.9E-11 78.5 2.5 84 376-459 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.1 1E-06 3.5E-11 76.9 2.8 91 24-114 54-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00017 5.7E-09 64.2 2.9 87 372-458 66-167 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00022 7.5E-09 63.4 3.4 86 28-113 38-136 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0016 5.4E-08 54.0 6.6 60 404-465 12-72 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0072 2.5E-07 50.0 6.5 56 380-437 12-68 (130)
165 3uim_A Brassinosteroid insensi 95.6 0.0088 3E-07 58.8 4.9 64 573-650 245-309 (326)
166 3hmm_A TGF-beta receptor type- 95.6 0.014 4.8E-07 56.5 5.9 37 617-653 262-298 (303)
167 2qkw_B Protein kinase; three-h 95.4 0.025 8.5E-07 55.4 7.3 64 575-652 251-315 (321)
168 3omv_A RAF proto-oncogene seri 94.0 0.036 1.2E-06 53.5 4.1 34 622-655 270-303 (307)
169 4aoj_A High affinity nerve gro 93.8 0.043 1.5E-06 53.7 4.2 32 622-653 289-320 (329)
170 4asz_A BDNF/NT-3 growth factor 92.4 0.091 3.1E-06 50.5 4.2 32 622-653 259-290 (299)
171 4gt4_A Tyrosine-protein kinase 91.5 0.093 3.2E-06 50.7 3.1 29 622-650 276-304 (308)
172 2nru_A Interleukin-1 receptor- 91.2 0.23 7.9E-06 47.9 5.6 34 619-652 273-306 (307)
173 3soc_A Activin receptor type-2 90.9 0.18 6.3E-06 49.1 4.6 35 619-653 285-319 (322)
174 2w1i_A JAK2; chromosomal rearr 90.6 0.19 6.5E-06 49.1 4.3 34 622-655 292-325 (326)
175 3ugc_A Tyrosine-protein kinase 90.4 0.17 5.9E-06 48.5 3.9 33 622-654 261-293 (295)
176 4ase_A Vascular endothelial gr 89.5 0.24 8.1E-06 48.8 4.0 32 622-653 317-348 (353)
177 1b6c_B TGF-B superfamily recep 89.3 0.29 1E-05 48.0 4.6 37 617-653 301-337 (342)
178 3gxj_A TGF-beta receptor type- 89.2 0.18 6E-06 48.5 2.8 36 617-652 262-297 (303)
179 3lxp_A Non-receptor tyrosine-p 89.2 0.29 9.8E-06 47.6 4.4 35 622-656 280-314 (318)
180 3s95_A LIMK-1, LIM domain kina 88.5 0.29 1E-05 47.2 3.9 34 622-655 252-285 (310)
181 3mdy_A Bone morphogenetic prot 88.4 0.36 1.2E-05 47.2 4.5 37 617-653 296-332 (337)
182 3q4u_A Activin receptor type-1 88.4 0.34 1.2E-05 46.4 4.3 32 619-650 269-300 (301)
183 3f66_A Hepatocyte growth facto 87.3 0.44 1.5E-05 45.6 4.3 36 622-657 261-296 (298)
184 3pls_A Macrophage-stimulating 86.8 0.49 1.7E-05 45.2 4.3 36 622-657 257-292 (298)
185 2qol_A Ephrin receptor; recept 86.8 0.44 1.5E-05 47.5 4.1 33 621-653 278-310 (373)
186 3g2f_A Bone morphogenetic prot 86.7 0.48 1.7E-05 46.3 4.3 36 621-656 287-322 (336)
187 2eva_A TAK1 kinase - TAB1 chim 86.7 0.46 1.6E-05 45.8 4.0 34 622-655 233-266 (307)
188 3cbl_A C-FES, proto-oncogene t 86.6 0.46 1.6E-05 47.5 4.0 32 622-653 344-375 (377)
189 3poz_A Epidermal growth factor 86.5 0.44 1.5E-05 46.5 3.8 31 622-652 248-278 (327)
190 3t9t_A Tyrosine-protein kinase 86.0 0.51 1.7E-05 44.2 3.9 32 622-653 234-265 (267)
191 3kul_A Ephrin type-A receptor 85.9 0.48 1.7E-05 46.1 3.8 32 622-653 283-314 (325)
192 4hcu_A Tyrosine-protein kinase 85.9 0.52 1.8E-05 44.3 3.9 32 622-653 236-267 (269)
193 2wqm_A Serine/threonine-protei 84.6 0.71 2.4E-05 44.5 4.2 33 622-654 267-299 (310)
194 1byg_A CSK, protein (C-termina 84.4 0.69 2.4E-05 43.7 4.0 32 622-653 243-274 (278)
195 3vhe_A Vascular endothelial gr 84.2 0.68 2.3E-05 45.7 4.0 32 622-653 325-356 (359)
196 3lb7_A RAF proto-oncogene seri 83.9 0.75 2.6E-05 44.3 4.1 34 622-655 270-303 (307)
197 3sxs_A Cytoplasmic tyrosine-pr 83.7 0.42 1.4E-05 44.9 2.1 31 622-652 234-264 (268)
198 3tt0_A Basic fibroblast growth 83.3 0.87 3E-05 45.5 4.4 33 622-654 322-354 (382)
199 3c1x_A Hepatocyte growth facto 83.3 0.85 2.9E-05 45.4 4.2 35 622-656 325-359 (373)
200 2i1m_A Macrophage colony-stimu 83.0 0.77 2.6E-05 44.7 3.8 33 622-654 296-328 (333)
201 3kmu_A ILK, integrin-linked ki 83.0 0.63 2.2E-05 43.6 3.0 31 622-652 240-270 (271)
202 3uzp_A CKI-delta, CKID, casein 82.6 0.86 3E-05 43.4 3.9 32 622-653 250-281 (296)
203 1mqb_A Ephrin type-A receptor 82.5 1 3.6E-05 43.9 4.5 32 622-653 279-310 (333)
204 3cc6_A Protein tyrosine kinase 82.5 0.97 3.3E-05 42.7 4.2 31 622-652 243-273 (281)
205 1qpc_A LCK kinase; alpha beta 82.4 0.94 3.2E-05 42.7 4.0 33 622-654 239-271 (279)
206 3dtc_A Mitogen-activated prote 82.4 0.65 2.2E-05 43.6 2.8 29 622-650 243-271 (271)
207 3lxl_A Tyrosine-protein kinase 82.3 0.72 2.5E-05 44.8 3.2 31 622-652 273-303 (327)
208 1luf_A Muscle-specific tyrosin 82.0 0.67 2.3E-05 45.4 2.9 34 622-655 305-338 (343)
209 3og7_A AKAP9-BRAF fusion prote 81.4 0.89 3E-05 43.2 3.4 30 622-651 258-287 (289)
210 4e5w_A Tyrosine-protein kinase 81.3 0.99 3.4E-05 43.2 3.8 30 622-651 272-301 (302)
211 4hgt_A Casein kinase I isoform 81.3 1 3.5E-05 42.8 3.9 32 622-653 250-281 (296)
212 3brb_A Proto-oncogene tyrosine 80.9 1.1 3.9E-05 43.0 4.1 33 622-654 278-310 (313)
213 1mp8_A Focal adhesion kinase 1 80.8 1.2 4.2E-05 42.0 4.2 32 622-653 246-277 (281)
214 3gen_A Tyrosine-protein kinase 80.7 1.3 4.4E-05 41.9 4.3 31 622-652 250-280 (283)
215 2xir_A Vascular endothelial gr 80.4 1.2 4.1E-05 42.9 4.0 32 622-653 280-311 (316)
216 1xbb_A Tyrosine-protein kinase 80.4 1.3 4.4E-05 42.1 4.2 31 622-652 249-279 (291)
217 1csn_A Casein kinase-1; phosph 79.7 1 3.5E-05 42.9 3.2 32 622-653 253-284 (298)
218 3kfa_A Tyrosine-protein kinase 79.7 1.4 4.7E-05 41.7 4.2 31 622-652 241-271 (288)
219 1t46_A HOMO sapiens V-KIT hard 79.6 1.4 4.7E-05 42.3 4.2 32 622-653 277-308 (313)
220 2ivs_A Proto-oncogene tyrosine 79.3 1.4 4.7E-05 42.4 4.1 31 622-652 281-311 (314)
221 3p86_A Serine/threonine-protei 79.0 1.2 3.9E-05 43.0 3.4 32 622-653 268-299 (309)
222 1u46_A ACK-1, activated CDC42 79.0 1.2 4E-05 42.3 3.4 32 622-653 254-285 (291)
223 3l9p_A Anaplastic lymphoma kin 78.7 1.4 5E-05 43.5 4.1 31 622-652 315-345 (367)
224 2jii_A Serine/threonine-protei 78.5 1.4 4.9E-05 43.2 4.0 32 622-653 306-337 (352)
225 4f0f_A Serine/threonine-protei 78.3 1 3.5E-05 42.7 2.7 28 622-649 259-286 (287)
226 2ks1_B Epidermal growth factor 78.2 1.7 5.8E-05 27.3 2.7 11 526-536 30-40 (44)
227 1u59_A Tyrosine-protein kinase 78.2 1.9 6.4E-05 40.9 4.5 33 622-654 242-274 (287)
228 3lzb_A Epidermal growth factor 78.0 1.4 4.9E-05 42.7 3.7 31 622-652 248-278 (327)
229 2pvf_A Fibroblast growth facto 77.9 1.6 5.5E-05 42.5 4.1 32 622-653 288-319 (334)
230 1k9a_A Carboxyl-terminal SRC k 77.6 1.5 5.1E-05 44.9 3.9 32 622-653 415-446 (450)
231 2y4i_B KSR2, HKSR2, kinase sup 77.1 0.79 2.7E-05 44.3 1.6 32 622-653 272-303 (319)
232 3qup_A Tyrosine-protein kinase 76.9 1.9 6.5E-05 41.6 4.3 31 622-652 268-298 (323)
233 2buj_A Serine/threonine-protei 76.5 1.3 4.4E-05 42.7 2.9 32 622-653 276-307 (317)
234 2yfx_A Tyrosine-protein kinase 76.5 1.8 6E-05 42.0 3.9 31 622-652 274-304 (327)
235 2a19_B Interferon-induced, dou 76.4 1.5 5E-05 41.4 3.2 30 624-653 246-275 (284)
236 2psq_A Fibroblast growth facto 76.2 1.9 6.5E-05 42.8 4.1 32 622-653 334-365 (370)
237 3kex_A Receptor tyrosine-prote 75.7 1.4 4.7E-05 42.8 2.8 29 623-651 247-275 (325)
238 2jwa_A Receptor tyrosine-prote 75.4 1.3 4.5E-05 27.7 1.6 10 527-536 31-40 (44)
239 1qcf_A Haematopoetic cell kina 74.7 1.4 4.8E-05 45.1 2.8 31 622-652 414-444 (454)
240 4fvq_A Tyrosine-protein kinase 73.5 1.2 4.2E-05 42.2 1.8 30 623-652 246-275 (289)
241 1opk_A P150, C-ABL, proto-onco 73.3 1.6 5.5E-05 45.3 2.8 29 622-650 448-476 (495)
242 1fvr_A Tyrosine-protein kinase 72.7 2.6 9E-05 40.7 4.1 32 622-653 270-301 (327)
243 3ll6_A Cyclin G-associated kin 72.6 2.1 7.3E-05 41.5 3.4 31 623-653 279-309 (337)
244 2lz0_A Uncharacterized protein 72.1 8.3 0.00028 29.5 5.9 47 387-434 7-53 (100)
245 1rjb_A FL cytokine receptor; k 71.9 2.5 8.7E-05 41.2 3.7 31 622-652 304-334 (344)
246 3op5_A Serine/threonine-protei 71.6 2.8 9.4E-05 41.4 4.0 32 622-653 299-330 (364)
247 2ozo_A Tyrosine-protein kinase 69.8 4.2 0.00014 43.5 5.1 34 621-654 567-600 (613)
248 1fmk_A C-SRC, P60-SRC, tyrosin 69.8 2.3 7.7E-05 43.6 2.9 30 622-651 410-439 (452)
249 2lz0_A Uncharacterized protein 67.3 12 0.00043 28.5 6.0 41 47-88 12-52 (100)
250 1p4o_A Insulin-like growth fac 67.3 2.7 9.2E-05 40.5 2.8 30 622-651 269-298 (322)
251 2v62_A Serine/threonine-protei 66.4 2.2 7.5E-05 41.7 1.9 30 622-651 298-327 (345)
252 3sv0_A Casein kinase I-like; t 66.2 3.9 0.00013 42.1 3.8 31 622-652 248-278 (483)
253 4fl3_A Tyrosine-protein kinase 65.0 5.2 0.00018 42.9 4.6 32 622-653 601-632 (635)
254 2l2t_A Receptor tyrosine-prote 65.0 7.5 0.00026 24.4 3.4 13 525-537 28-40 (44)
255 2izr_A Casein kinase I isoform 63.3 3.9 0.00013 39.5 3.1 33 621-653 250-282 (330)
256 2j0j_A Focal adhesion kinase 1 62.7 5 0.00017 43.2 4.0 31 622-652 621-651 (656)
257 2h8h_A Proto-oncogene tyrosine 61.7 3.8 0.00013 43.0 2.8 30 622-651 493-522 (535)
258 4g3f_A NF-kappa-beta-inducing 54.0 11 0.00039 36.4 4.4 29 624-652 288-316 (336)
259 3dbq_A Dual specificity protei 52.4 7.1 0.00024 37.9 2.8 24 622-645 250-273 (343)
260 2h34_A Serine/threonine-protei 52.0 8.4 0.00029 36.7 3.2 30 622-651 265-295 (309)
261 3is5_A Calcium-dependent prote 51.0 7.6 0.00026 36.5 2.7 23 623-645 256-278 (285)
262 4agu_A Cyclin-dependent kinase 50.5 8.1 0.00028 36.8 2.8 24 622-645 261-284 (311)
263 2w5a_A Serine/threonine-protei 49.8 7.4 0.00025 36.3 2.4 26 622-647 244-269 (279)
264 3p1a_A MYT1 kinase, membrane-a 49.8 8.3 0.00029 36.8 2.8 24 622-645 281-304 (311)
265 2h6d_A 5'-AMP-activated protei 49.6 8.9 0.0003 35.7 2.9 24 622-645 238-261 (276)
266 3fme_A Dual specificity mitoge 49.6 6.3 0.00022 37.0 1.9 24 622-645 243-266 (290)
267 1x8b_A WEE1HU, WEE1-like prote 48.4 8 0.00027 36.1 2.4 24 622-645 256-279 (289)
268 3cek_A Dual specificity protei 47.1 9.8 0.00033 36.3 2.8 24 622-645 269-292 (313)
269 1zy4_A Serine/threonine-protei 47.0 10 0.00035 35.7 2.9 24 622-645 260-283 (303)
270 1t4h_A Serine/threonine-protei 46.9 8.2 0.00028 36.3 2.2 24 622-645 259-282 (290)
271 3aln_A Dual specificity mitoge 46.9 7.3 0.00025 37.5 1.9 24 622-645 262-285 (327)
272 3uqc_A Probable conserved tran 46.8 13 0.00044 35.0 3.5 30 622-652 236-265 (286)
273 2vwi_A Serine/threonine-protei 46.8 8.8 0.0003 36.3 2.4 24 622-645 264-287 (303)
274 3a99_A Proto-oncogene serine/t 46.2 9 0.00031 36.7 2.4 24 622-645 270-293 (320)
275 2zmd_A Dual specificity protei 46.2 10 0.00034 37.7 2.8 24 622-645 297-320 (390)
276 3bhy_A Death-associated protei 46.1 11 0.00039 35.0 3.1 31 622-652 242-274 (283)
277 2iwi_A Serine/threonine-protei 46.0 12 0.0004 35.7 3.1 24 622-645 260-283 (312)
278 2clq_A Mitogen-activated prote 45.4 12 0.0004 35.2 3.0 24 622-645 255-278 (295)
279 3fdn_A Serine/threonine-protei 44.9 12 0.0004 34.9 2.9 23 623-645 235-257 (279)
280 2eue_A Carbon catabolite derep 43.9 8.2 0.00028 35.9 1.7 24 622-645 239-262 (275)
281 2c30_A Serine/threonine-protei 43.2 12 0.00041 35.8 2.8 22 624-645 273-294 (321)
282 1wak_A Serine/threonine-protei 43.1 12 0.00041 37.0 2.9 26 620-645 366-391 (397)
283 3an0_A Dual specificity mitoge 42.9 9.2 0.00031 37.0 1.9 24 622-645 287-310 (340)
284 3cok_A Serine/threonine-protei 42.9 9.2 0.00032 35.6 1.8 24 622-645 239-262 (278)
285 3a7i_A MST3 kinase, serine/thr 42.7 9.4 0.00032 36.1 1.9 25 622-646 247-271 (303)
286 2wtk_C Serine/threonine-protei 42.6 15 0.00051 34.7 3.3 24 623-646 241-264 (305)
287 3m2w_A MAP kinase-activated pr 42.5 13 0.00044 35.2 2.8 24 622-645 233-256 (299)
288 2dyl_A Dual specificity mitoge 42.3 11 0.00038 35.9 2.3 24 622-645 260-283 (318)
289 1z57_A Dual specificity protei 41.7 13 0.00045 35.6 2.8 25 621-645 304-328 (339)
290 4aaa_A Cyclin-dependent kinase 41.4 7.3 0.00025 37.6 0.9 24 622-645 283-306 (331)
291 3llt_A Serine/threonine kinase 41.4 10 0.00034 37.1 1.9 25 621-645 331-355 (360)
292 3fpq_A Serine/threonine-protei 41.1 12 0.0004 35.5 2.2 22 624-645 261-282 (290)
293 3kk8_A Calcium/calmodulin depe 41.0 11 0.00038 35.1 2.1 24 622-645 238-261 (284)
294 2ac3_A MAP kinase-interacting 40.8 16 0.00056 34.6 3.3 24 622-645 272-295 (316)
295 3byv_A Rhoptry kinase; malaria 39.8 13 0.00043 36.7 2.4 31 622-652 336-368 (377)
296 3g33_A Cell division protein k 39.4 15 0.00052 34.8 2.8 24 622-645 273-296 (308)
297 3fhr_A MAP kinase-activated pr 39.1 16 0.00054 35.3 2.9 24 622-645 264-287 (336)
298 2yex_A Serine/threonine-protei 39.0 13 0.00045 34.4 2.3 23 623-645 239-261 (276)
299 2wei_A Calmodulin-domain prote 38.9 16 0.00056 34.1 2.9 24 622-645 253-276 (287)
300 3fxz_A Serine/threonine-protei 38.8 13 0.00045 35.0 2.3 23 623-645 247-269 (297)
301 4eut_A Serine/threonine-protei 38.8 24 0.00082 35.0 4.2 31 622-652 279-309 (396)
302 2eu9_A Dual specificity protei 38.8 13 0.00045 36.0 2.3 25 621-645 309-333 (355)
303 2zv2_A Calcium/calmodulin-depe 38.7 14 0.00047 34.9 2.3 24 622-645 269-292 (298)
304 2vx3_A Dual specificity tyrosi 38.3 16 0.00055 36.0 2.9 25 621-645 348-372 (382)
305 2y0a_A Death-associated protei 38.1 17 0.00057 34.9 2.9 23 623-645 249-271 (326)
306 1ob3_A PFPK5, cell division co 37.9 17 0.00057 34.1 2.8 24 622-645 257-280 (288)
307 2j7t_A Serine/threonine-protei 37.8 14 0.00049 34.8 2.3 24 622-645 252-275 (302)
308 2rio_A Serine/threonine-protei 37.8 14 0.00048 37.3 2.4 24 622-645 272-295 (434)
309 2i6l_A Mitogen-activated prote 37.4 16 0.00054 34.7 2.6 24 622-645 282-305 (320)
310 3nsz_A CK II alpha, casein kin 37.1 16 0.00055 35.0 2.6 24 622-645 296-319 (330)
311 3dls_A PAS domain-containing s 37.1 18 0.00061 34.9 2.9 23 623-645 252-274 (335)
312 1tki_A Titin; serine kinase, m 36.3 20 0.00068 34.3 3.1 24 622-645 234-257 (321)
313 3niz_A Rhodanese family protei 35.8 19 0.00065 34.2 2.8 24 622-645 277-300 (311)
314 2a2a_A Death-associated protei 35.8 23 0.0008 33.7 3.5 24 622-645 249-272 (321)
315 3gbz_A Kinase, CMGC CDK; ssgci 35.8 16 0.00056 35.0 2.4 24 622-645 295-318 (329)
316 3qd2_B Eukaryotic translation 35.7 15 0.0005 35.2 2.0 23 623-645 303-325 (332)
317 2b9h_A MAP kinase FUS3, mitoge 35.5 15 0.00053 35.5 2.2 24 622-645 282-305 (353)
318 3hko_A Calcium/calmodulin-depe 35.3 23 0.00077 34.2 3.3 23 623-645 308-330 (345)
319 3o0g_A Cell division protein k 35.2 17 0.00058 34.1 2.4 23 623-645 260-282 (292)
320 2ycf_A Serine/threonine-protei 35.1 19 0.00066 34.3 2.8 24 622-645 251-274 (322)
321 1q8y_A SR protein kinase; tran 34.9 20 0.0007 34.9 3.0 25 621-645 309-333 (373)
322 4eqm_A Protein kinase; transfe 34.9 19 0.00066 33.8 2.7 30 622-651 244-274 (294)
323 2pml_X PFPK7, Ser/Thr protein 34.5 18 0.0006 35.0 2.4 24 622-645 299-322 (348)
324 3lm5_A Serine/threonine-protei 34.5 15 0.00051 35.3 1.8 24 622-645 264-287 (327)
325 2l9u_A Receptor tyrosine-prote 34.3 39 0.0013 19.5 2.7 14 523-536 22-35 (40)
326 3e3p_A Protein kinase, putativ 34.1 15 0.00052 35.7 1.9 25 621-645 290-314 (360)
327 3f3z_A Calcium/calmodulin-depe 34.0 18 0.00061 33.5 2.3 24 622-645 238-261 (277)
328 2r3i_A Cell division protein k 33.4 22 0.00074 33.4 2.8 24 622-645 260-283 (299)
329 1phk_A Phosphorylase kinase; g 33.2 16 0.00056 34.2 1.9 24 622-645 260-283 (298)
330 1u5q_A Serine/threonine protei 33.0 16 0.00056 35.4 1.9 22 624-645 284-305 (348)
331 2rku_A Serine/threonine-protei 32.7 12 0.0004 35.3 0.7 23 623-645 243-265 (294)
332 3eqc_A Dual specificity mitoge 32.7 18 0.00061 35.2 2.1 24 622-645 301-324 (360)
333 3com_A Serine/threonine-protei 32.6 20 0.00067 34.0 2.3 24 622-645 255-278 (314)
334 1blx_A Cyclin-dependent kinase 32.4 25 0.00086 33.4 3.1 24 622-645 273-296 (326)
335 3kvw_A DYRK2, dual specificity 32.3 21 0.00073 35.9 2.6 24 622-645 385-408 (429)
336 2vgo_A Serine/threonine-protei 32.2 20 0.0007 33.3 2.4 23 623-645 240-262 (284)
337 2y7j_A Phosphorylase B kinase 32.1 27 0.00092 34.1 3.3 24 622-645 336-359 (365)
338 3gni_B Strad alpha; kinase fol 31.2 21 0.00071 35.2 2.3 24 622-645 310-333 (389)
339 3mtl_A Cell division protein k 31.1 18 0.00063 34.6 1.8 24 622-645 258-281 (324)
340 3i6u_A CDS1, serine/threonine- 30.6 29 0.00099 34.7 3.3 24 622-645 376-399 (419)
341 3pg1_A Mitogen-activated prote 30.5 21 0.00072 34.7 2.2 24 622-645 293-316 (362)
342 3tki_A Serine/threonine-protei 30.4 22 0.00075 34.0 2.3 23 623-645 239-261 (323)
343 2x7f_A TRAF2 and NCK-interacti 29.8 24 0.00081 33.7 2.4 23 623-645 264-286 (326)
344 3q60_A ROP5B; pseudokinase, tr 29.7 22 0.00077 34.7 2.3 24 622-645 329-352 (371)
345 3p23_A Serine/threonine-protei 29.7 23 0.00078 35.7 2.4 24 622-645 260-283 (432)
346 2w4o_A Calcium/calmodulin-depe 29.5 30 0.001 33.5 3.1 24 622-645 282-305 (349)
347 3zgw_A Maternal embryonic leuc 29.5 23 0.00078 34.4 2.2 22 624-645 239-260 (347)
348 3mi9_A Cell division protein k 29.4 22 0.00077 34.3 2.2 24 622-645 288-311 (351)
349 3c0i_A Peripheral plasma membr 29.3 28 0.00094 33.8 2.8 23 623-645 264-286 (351)
350 4g31_A Eukaryotic translation 29.2 24 0.00081 33.5 2.2 22 624-645 258-279 (299)
351 3qyz_A Mitogen-activated prote 28.4 28 0.00094 34.0 2.6 24 622-645 290-313 (364)
352 2pmi_A Negative RE, cyclin-dep 27.4 23 0.00079 33.7 1.8 24 622-645 270-293 (317)
353 4exu_A Mitogen-activated prote 27.3 30 0.001 33.9 2.7 24 622-645 300-323 (371)
354 1ua2_A CAK, cell division prot 27.1 26 0.00087 33.9 2.1 24 622-645 268-291 (346)
355 3uc3_A Serine/threonine-protei 26.2 32 0.0011 33.5 2.7 24 622-645 251-274 (361)
356 2nr5_A Hypothetical protein SO 26.2 1.3E+02 0.0045 19.1 4.9 36 617-652 20-55 (67)
357 3coi_A Mitogen-activated prote 25.7 33 0.0011 33.1 2.7 24 622-645 282-305 (353)
358 4euu_A Serine/threonine-protei 25.7 56 0.0019 30.9 4.2 29 622-650 279-307 (319)
359 3hyh_A Carbon catabolite-derep 25.5 36 0.0012 31.7 2.7 22 624-645 241-262 (275)
360 3h4j_B AMPK kdaid, SNF1-like p 25.5 27 0.00091 33.7 1.9 23 623-645 236-258 (336)
361 2jam_A Calcium/calmodulin-depe 25.4 29 0.00099 32.6 2.1 24 622-645 238-261 (304)
362 1kob_A Twitchin; kinase, intra 24.8 33 0.0011 33.9 2.4 24 622-645 281-304 (387)
363 2owb_A Serine/threonine-protei 24.1 20 0.00069 34.4 0.7 22 624-645 270-291 (335)
364 3kn6_A Ribosomal protein S6 ki 23.9 16 0.00054 35.1 -0.1 22 623-644 248-269 (325)
365 3fe3_A MAP/microtubule affinit 23.8 33 0.0011 32.9 2.1 22 624-645 243-264 (328)
366 3dzo_A Rhoptry kinase domain; 23.7 30 0.001 34.5 1.9 24 622-645 340-363 (413)
367 3soa_A Calcium/calmodulin-depe 23.3 47 0.0016 33.5 3.3 22 624-645 246-267 (444)
368 2x4f_A Myosin light chain kina 23.0 46 0.0016 32.6 3.1 24 622-645 319-342 (373)
369 2xrw_A Mitogen-activated prote 23.0 43 0.0015 32.7 2.9 24 622-645 295-318 (371)
370 3rgf_A Cyclin-dependent kinase 22.0 37 0.0013 33.7 2.2 24 622-645 310-333 (405)
371 1nxk_A MAP kinase-activated pr 21.6 51 0.0017 32.6 3.1 24 622-645 298-321 (400)
372 2y94_A 5'-AMP-activated protei 20.3 48 0.0016 33.8 2.6 23 623-645 244-266 (476)
373 1ynf_A Succinylarginine dihydr 20.1 26 0.00089 33.8 0.5 40 575-626 404-445 (458)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.1e-62 Score=546.70 Aligned_cols=485 Identities=33% Similarity=0.512 Sum_probs=319.4
Q ss_pred CCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcc-------------
Q 038552 4 SRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGK------------- 70 (659)
Q Consensus 4 ~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------------- 70 (659)
.++++|++|++++|.+++.+|. +.++++|++|++++|.+++.+|..+.++++|++|++++|.+.+.
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 4566666666666666655554 66666666666666666666666666666666666666655444
Q ss_pred ---------cccccCCC-CCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcC
Q 038552 71 ---------IPTTLGLL-RNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNF 140 (659)
Q Consensus 71 ---------~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 140 (659)
+|..+... ++|++|++++|.+++.+|..++++++|++|++++|.+++.+|......+++|++|++++|.+
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 44444332 45555555555554445555555555555555555554445444223455555555555555
Q ss_pred CcccChhccCCC-CCCEEEccCCCCccccccccCC--CCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCc
Q 038552 141 FGSIPNSLSNAS-NLEILDLTSNQLKGKVSIDFSS--LKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQ 217 (659)
Q Consensus 141 ~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 217 (659)
++.+|..+.+++ +|++|++++|.+++.++..+.. +++|++|++++|.+++ .++..+..+++|++|++++|.
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG------KIPPTLSNCSELVSLHLSFNY 429 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE------ECCGGGGGCTTCCEEECCSSE
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc------ccCHHHhcCCCCCEEECcCCc
Confidence 444455444444 4555555555555444444443 4455555555555443 334455556666666666666
Q ss_pred cccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCc
Q 038552 218 FGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPS 297 (659)
Q Consensus 218 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 297 (659)
+.+.+|..+..+. +|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|++|++++|++.+.+|.
T Consensus 430 l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 430 LSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp EESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccCcccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence 6666666655554 566666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccc----------------------
Q 038552 298 SLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTL---------------------- 355 (659)
Q Consensus 298 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~---------------------- 355 (659)
.++.+++|++|++++|.+.+.+|..+..+++|+.|++++|+++|.+|..++....+..
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc
Confidence 6666666666666666666666666666666666666666666666655544322210
Q ss_pred -----------------------eeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCC
Q 038552 356 -----------------------SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFF 412 (659)
Q Consensus 356 -----------------------~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 412 (659)
.++++.|.+.|.+|..+..+++|++|+|++|+++|.+|..+++++.|++|+|++|.+
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 668 (768)
T 3rgz_A 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668 (768)
T ss_dssp SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc
Confidence 122333445555566667788999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCcccCCCCC
Q 038552 413 HGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDELH 492 (659)
Q Consensus 413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~ 492 (659)
+|.+|..++++++|+.|||++|+++|.+|..+..+++|+.||+++|+++|.+|..+.+.++...++.|||++||.+
T Consensus 669 ~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~---- 744 (768)
T 3rgz_A 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP---- 744 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT----
T ss_pred CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCCC
Q 038552 493 LPSCPSKG 500 (659)
Q Consensus 493 ~~~c~~~~ 500 (659)
.++|....
T Consensus 745 l~~C~~~~ 752 (768)
T 3rgz_A 745 LPRCDPSN 752 (768)
T ss_dssp SCCCCSCC
T ss_pred CcCCCCCc
Confidence 23676443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-58 Score=517.53 Aligned_cols=475 Identities=32% Similarity=0.543 Sum_probs=336.6
Q ss_pred CCCCCCCEEEccCCcccccCchh---hcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCC
Q 038552 4 SRYSNLIELRVSKNKLEGQIPEE---IGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRN 80 (659)
Q Consensus 4 ~~~~~L~~L~ls~n~~~~~~~~~---~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 80 (659)
.++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+.+|. ++++++
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~ 224 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSA 224 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCS
T ss_pred ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCC
Confidence 56777777777777777666655 5555555555555555554333 24555555555555555444444 555555
Q ss_pred CCEEEeecCcCCccCcccccCCCCCCEEeccCcccc----------------------ccChHHHhcCCCCCcEEEccCC
Q 038552 81 LVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFS----------------------GSLPLDIAVNLPNLKALAIGGN 138 (659)
Q Consensus 81 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~----------------------~~~~~~~~~~l~~L~~L~l~~n 138 (659)
|++|++++|.+++.+|..++++++|++|++++|.++ +.+|..++..+++|++|++++|
T Consensus 225 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304 (768)
T ss_dssp CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC
Confidence 555555555555555555555555555555555554 4444444322355555555555
Q ss_pred cCCcccChhccCCCCCCEEEccCCCCccccccc-cCCCCCCCEEECCCCCCCCCCCCCccccccccCCC-CCcEEEccCC
Q 038552 139 NFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCS-SLKVISLYAN 216 (659)
Q Consensus 139 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~n 216 (659)
.+++.+|..++++++|++|++++|.+.+.+|.. +..+++|++|++++|.+++ .++..+..++ +|++|++++|
T Consensus 305 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG------ELPESLTNLSASLLTLDLSSN 378 (768)
T ss_dssp EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE------CCCTTHHHHTTTCSEEECCSS
T ss_pred cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc------cccHHHHhhhcCCcEEEccCC
Confidence 555455555555555555555555554444433 4555555555555554443 2233333333 5555555555
Q ss_pred ccccccChhHHhc-cccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCC
Q 038552 217 QFGGELPHSIANL-SSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSI 295 (659)
Q Consensus 217 ~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 295 (659)
.+.+.+|..+... ..+|+.|++++|.+++.+|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|.+.+.+
T Consensus 379 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 458 (768)
T 3rgz_A 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458 (768)
T ss_dssp EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC
Confidence 5555554444331 225777777777777778888888888888888888888888888888888888888888888888
Q ss_pred CccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccC
Q 038552 296 PSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNL 375 (659)
Q Consensus 296 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l 375 (659)
|..+..+++|++|++++|.+++.+|..+.++++|++|++++|++++.+|..+..++.++ .|++++|.+.+.+|..+..+
T Consensus 459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA-ILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC-EEECCSSCCEEECCGGGGGC
T ss_pred CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC-EEECCCCcccCcCCHHHcCC
Confidence 88888888899999999888888888888888999999999998888888888888888 89999999988888888889
Q ss_pred CCCceeecCCCcccccCCcc------------------------------------------------------------
Q 038552 376 KNLVKLDISGNQFSGVIPVT------------------------------------------------------------ 395 (659)
Q Consensus 376 ~~L~~L~L~~n~l~~~~~~~------------------------------------------------------------ 395 (659)
++|++|+|++|+++|.+|..
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 99999999988887766643
Q ss_pred ----------ccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCC
Q 038552 396 ----------LSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVP 465 (659)
Q Consensus 396 ----------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p 465 (659)
+..+++|++|+|++|+++|.+|..++++++|+.|++++|.++|.+|..++.+++|+.||+++|+++|.+|
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 3345789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CccCCcccccccCCCCCcccCC
Q 038552 466 KK-GVFSNKTKISLQGNVKLCGGID 489 (659)
Q Consensus 466 ~~-~~~~~~~~~~~~~n~~lc~~~~ 489 (659)
.. +.+..++.+++++|+ +.|.+|
T Consensus 698 ~~l~~l~~L~~L~ls~N~-l~g~iP 721 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNN-LSGPIP 721 (768)
T ss_dssp GGGGGCCCCSEEECCSSE-EEEECC
T ss_pred hHHhCCCCCCEEECcCCc-ccccCC
Confidence 65 567788999999885 445444
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.8e-53 Score=464.12 Aligned_cols=469 Identities=23% Similarity=0.238 Sum_probs=405.0
Q ss_pred CCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEe
Q 038552 7 SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNV 86 (659)
Q Consensus 7 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 86 (659)
+++++|++++|.+++..|.+|.++++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|..|+++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 37899999999999888889999999999999999999888999999999999999999998888899999999999999
Q ss_pred ecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCC--EEEccCCCC
Q 038552 87 GENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLE--ILDLTSNQL 164 (659)
Q Consensus 87 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~--~L~l~~n~l 164 (659)
++|.+++..+..++++++|++|++++|.+++....... .+++|+.|++++|.+++..+..++.+++|+ .|++++|.+
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 99999877678899999999999999998842222333 589999999999999988888899999999 899999998
Q ss_pred ccccccccCCC---------------------------------------------------CCCCEEECCCCCCCCCCC
Q 038552 165 KGKVSIDFSSL---------------------------------------------------KNLSWLNLEQNNLGMGTA 193 (659)
Q Consensus 165 ~~~~~~~l~~l---------------------------------------------------~~L~~L~l~~n~l~~~~~ 193 (659)
.+..+..+... .+|+.|++++|.++..
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~-- 269 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI-- 269 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC--
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc--
Confidence 87776655431 0455666666666542
Q ss_pred CCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCc
Q 038552 194 NDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPD 273 (659)
Q Consensus 194 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 273 (659)
.+..+..+++|++|++++|.++ .+|..+..+. +|+.|++++|.+++..|..+..+++|++|++++|.+.+.++.
T Consensus 270 ----~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 270 ----SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp ----CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred ----CHHHhccccCCCEEeccCCccC-CCChhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 2334778899999999999988 7787777765 899999999999988788899999999999999998876664
Q ss_pred -cccCCCCCcEEEccCCCCCCCC--CccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchh-hhh
Q 038552 274 -TIGELKNLQQLSLYNNSLQGSI--PSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQ-LLS 349 (659)
Q Consensus 274 -~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~ 349 (659)
.+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+.. +..
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 4889999999999999998665 778899999999999999999888889999999999999999998776554 778
Q ss_pred cccccceeccccccccCCCccccccCCCCceeecCCCccccc---CCccccCCCCCCeEECCCCCCCCCCcccccCCCCC
Q 038552 350 ITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV---IPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSI 426 (659)
Q Consensus 350 ~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 426 (659)
++.++ .|++++|.+.+..|..+..+++|++|+|++|++++. .+..+..+++|++|++++|.+.+..|..|..+++|
T Consensus 424 l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 424 LHLLK-VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp CTTCC-EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cccCC-EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 88898 899999999988899999999999999999999863 33678999999999999999999889999999999
Q ss_pred CEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC-CccCCcccccccCCCCCcc
Q 038552 427 KEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GVFSNKTKISLQGNVKLCG 486 (659)
Q Consensus 427 ~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~lc~ 486 (659)
+.|++++|.+++..|..+..++.| .|++++|++++..|.. ..+++++.+++++||+.|.
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 999999999999999999999999 9999999999877653 4567889999999999985
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.2e-52 Score=456.63 Aligned_cols=454 Identities=22% Similarity=0.242 Sum_probs=409.9
Q ss_pred CCCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCC
Q 038552 2 NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNL 81 (659)
Q Consensus 2 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 81 (659)
+|+++++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+.+..+..|+++++|
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 68899999999999999998889999999999999999999998889999999999999999999988778889999999
Q ss_pred CEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCc--EEEccCCcCCcccChhccCC--------
Q 038552 82 VDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLK--ALAIGGNNFFGSIPNSLSNA-------- 151 (659)
Q Consensus 82 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~--~L~l~~n~~~~~~~~~l~~l-------- 151 (659)
++|++++|.+++..+..+..+++|++|++++|.+++..|..+. .+++|+ .|++++|.+++..|..+...
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 210 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH-TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECT
T ss_pred cEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh-hhcccceeEEecCCCccCccChhHhhhccccccccC
Confidence 9999999999875545555699999999999999955565555 899999 89999999987766554321
Q ss_pred -------------------------------------------CCCCEEEccCCCCccccccccCCCCCCCEEECCCCCC
Q 038552 152 -------------------------------------------SNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNL 188 (659)
Q Consensus 152 -------------------------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 188 (659)
.+|+.|++++|.+++..+..|+.+++|++|++++|.+
T Consensus 211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 290 (606)
T 3t6q_A 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290 (606)
T ss_dssp TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC
T ss_pred CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc
Confidence 1678889999999888888899999999999999988
Q ss_pred CCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcc-cccCCCcCeeecccccC
Q 038552 189 GMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPG-IRNLVNLIALTMEINKL 267 (659)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l 267 (659)
+ .++..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+.+.+|.. +..+++|++|++++|.+
T Consensus 291 ~-------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 362 (606)
T 3t6q_A 291 S-------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362 (606)
T ss_dssp S-------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC
T ss_pred C-------CCChhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc
Confidence 7 3556788999999999999999987787888876 8999999999998777654 89999999999999999
Q ss_pred CCCC--CccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCc-cCcCCCCCCEEeCCCcccccccc
Q 038552 268 HGTI--PDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPS-SLGNCQILRMFNASRNKLTGALP 344 (659)
Q Consensus 268 ~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~ 344 (659)
.+.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+..|
T Consensus 363 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence 8765 77899999999999999999988899999999999999999999877655 48999999999999999998889
Q ss_pred hhhhhcccccceeccccccccCC---CccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCccccc
Q 038552 345 HQLLSITTLTLSLDLSNNLLNGS---LPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLS 421 (659)
Q Consensus 345 ~~~~~~~~l~~~L~l~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 421 (659)
..+..++.++ +|++++|.+.+. .+..+..+++|++|+|++|.+++..|..|..+++|++|++++|++++..|..+.
T Consensus 443 ~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 521 (606)
T 3t6q_A 443 QLFDGLPALQ-HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521 (606)
T ss_dssp TTTTTCTTCC-EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred HHHhCCCCCC-EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhC
Confidence 9999999998 999999999863 336789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552 422 SLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK 466 (659)
Q Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~ 466 (659)
++++| .|++++|.+++..|..+..+++|+.+++++|++.|.++.
T Consensus 522 ~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 522 HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp TCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred ccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 99999 999999999999999999999999999999999998874
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-51 Score=458.34 Aligned_cols=478 Identities=24% Similarity=0.267 Sum_probs=335.9
Q ss_pred CCCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCC
Q 038552 2 NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNL 81 (659)
Q Consensus 2 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 81 (659)
+|+++++|++|++++|.+++..|..|.++++|++|++++|.+++..+.+|+++++|++|++++|.+.+..|..|+++++|
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 46778888888888888888788888888888888888888886555578888888888888888877667788888889
Q ss_pred CEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHh-cCCCCCcEEEccCCcCCcccChhccCC---------
Q 038552 82 VDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIA-VNLPNLKALAIGGNNFFGSIPNSLSNA--------- 151 (659)
Q Consensus 82 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~~l--------- 151 (659)
++|++++|.+++..|..++++++|++|++++|.+++..+..+. ..+++|+.|++++|.+++..|..+..+
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence 9999888888877788888888888888888888754444332 135677777777777765555433322
Q ss_pred ------------------CC--------------------------CCEEEccCCCCccccccccCCCCCCCEEECCCCC
Q 038552 152 ------------------SN--------------------------LEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNN 187 (659)
Q Consensus 152 ------------------~~--------------------------L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (659)
++ |++|++++|.+.+..+..|+.+++|++|++++|.
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 22 5555555555554444555555555555555555
Q ss_pred CCCCCCCCccccccccCCCCCcEEEccCCcccc-----ccCh----hHHhccccCCEEEcccCcccccCCcccccCCC--
Q 038552 188 LGMGTANDLDFVTFLTNCSSLKVISLYANQFGG-----ELPH----SIANLSSTMTDFRIGANQISGTIPPGIRNLVN-- 256 (659)
Q Consensus 188 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-----~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-- 256 (659)
+.+.. +..+..+++|+.|++++|...+ .+|. .+..+ ++|+.|++++|.+++..+..+..+++
T Consensus 284 l~~~~------~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 356 (680)
T 1ziw_A 284 IQHLF------SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFTGLINLK 356 (680)
T ss_dssp BSEEC------TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC-TTCCEEECCSCCBCCCCTTTTTTCTTCC
T ss_pred cCccC------hhhhcCCCCccEEeccchhhhcccccccccccChhhcccC-CCCCEEECCCCccCCCChhHhccccCCc
Confidence 44321 1122222222222222221111 0010 11111 13444444444444444444444444
Q ss_pred --------------------------cCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCC-ccccCCCCCcEEE
Q 038552 257 --------------------------LIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP-SSLGNLTKLVELP 309 (659)
Q Consensus 257 --------------------------L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 309 (659)
|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+| ..+..+++|++|+
T Consensus 357 ~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 436 (680)
T 1ziw_A 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436 (680)
T ss_dssp EEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEE
T ss_pred EEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEe
Confidence 4444445555555556666677777777777777765444 5667777777777
Q ss_pred ccCCccccccCccCcCCCCCCEEeCCCcccc--cccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCc
Q 038552 310 LSYNNLQGNIPSSLGNCQILRMFNASRNKLT--GALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQ 387 (659)
Q Consensus 310 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 387 (659)
+++|.+.+..+..|..+++|+.|++++|.+. +.+|..+..++.++ .|++++|.+.+..+..+..+++|++|+|++|+
T Consensus 437 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~-~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT-ILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC-EEECCCCCCCcCChhhhccccccCEEeCCCCC
Confidence 7777777666667777777777887777765 56778888888888 89999999998878889999999999999999
Q ss_pred ccccCC--------ccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCc
Q 038552 388 FSGVIP--------VTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNH 459 (659)
Q Consensus 388 l~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~ 459 (659)
+++..+ ..+.++++|++|+|++|.+....+..|.++++|+.|++++|.+++..+..|..+++|+.|++++|.
T Consensus 516 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCc
Confidence 886522 237889999999999999996666679999999999999999998777888999999999999999
Q ss_pred CcccCCCC-C-ccCCcccccccCCCCCccc
Q 038552 460 FEGEVPKK-G-VFSNKTKISLQGNVKLCGG 487 (659)
Q Consensus 460 l~~~~p~~-~-~~~~~~~~~~~~n~~lc~~ 487 (659)
+++..|.. + .+++++.+++++||+.|..
T Consensus 596 l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp CCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCccChhHhcccccccCEEEccCCCcccCC
Confidence 98866542 2 4688999999999999964
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-51 Score=452.03 Aligned_cols=469 Identities=21% Similarity=0.189 Sum_probs=397.6
Q ss_pred CCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEe
Q 038552 7 SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNV 86 (659)
Q Consensus 7 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 86 (659)
+++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 67999999999999888888999999999999999999888889999999999999999998888999999999999999
Q ss_pred ecCcCCccCcccccCCCCCCEEeccCccccc-cChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCC----EEEccC
Q 038552 87 GENRFSGMFPRSICNISSLEWIYLPFNRFSG-SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLE----ILDLTS 161 (659)
Q Consensus 87 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~l~~ 161 (659)
++|.+++..+..++++++|++|++++|.+++ .+|..+. .+++|++|++++|.+++..+..++.+++|+ +|++++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGG-TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHh-hcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 9999987777889999999999999999874 5677776 899999999999999887777777766654 899999
Q ss_pred CCCccccccccCCCCCCCEEECCCCCCCCC--------------------------------------------------
Q 038552 162 NQLKGKVSIDFSSLKNLSWLNLEQNNLGMG-------------------------------------------------- 191 (659)
Q Consensus 162 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-------------------------------------------------- 191 (659)
|.+++..+..+... +|+.|++++|.+.+.
T Consensus 191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 99887666666554 788888888865410
Q ss_pred -CCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCC
Q 038552 192 -TANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT 270 (659)
Q Consensus 192 -~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 270 (659)
...-......+..+++|+.|++++|.+. .+| .+..+. +++.|++++|.+ +.+| .+ .+++|+.|++++|...+.
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~-~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHF-KWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTC-CCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred ccccccccccccccCCCCCEEEecCccch-hhh-hccccc-cCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc
Confidence 0000011122566788999999988875 455 455544 799999999998 5777 44 889999999999965544
Q ss_pred CCccccCCCCCcEEEccCCCCCCC--CCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccc-hhh
Q 038552 271 IPDTIGELKNLQQLSLYNNSLQGS--IPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALP-HQL 347 (659)
Q Consensus 271 ~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~ 347 (659)
. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+
T Consensus 344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh
Confidence 4 567899999999999999865 47888999999999999999884 66889999999999999999998777 678
Q ss_pred hhcccccceeccccccccCCCccccccCCCCceeecCCCcccc-cCCccccCCCCCCeEECCCCCCCCCCcccccCCCCC
Q 038552 348 LSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSG-VIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSI 426 (659)
Q Consensus 348 ~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 426 (659)
..++.++ .|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++..|..+.++++|
T Consensus 421 ~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 421 LSLEKLL-YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTCTTCC-EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hccccCC-EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 8899998 99999999999999999999999999999999997 478899999999999999999999999999999999
Q ss_pred CEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccC-CcccccccCCCCCccc
Q 038552 427 KEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFS-NKTKISLQGNVKLCGG 487 (659)
Q Consensus 427 ~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~-~~~~~~~~~n~~lc~~ 487 (659)
+.|++++|.+++.+|..+..+++|+.|++++|+++...+....++ +++.+++++||+.|..
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCC
Confidence 999999999999999999999999999999999985433334444 5899999999999954
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-51 Score=461.03 Aligned_cols=471 Identities=19% Similarity=0.204 Sum_probs=378.5
Q ss_pred CCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccc-cccccCCCCCcEEEccCCccCcccccccCCCCCCCEE
Q 038552 6 YSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQL-PDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDL 84 (659)
Q Consensus 6 ~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 84 (659)
.+++++|+|++|.+++..+..|.++++|++|++++|...+.+ |.+|.++++|++|+|++|.+.+..|..|+++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 468999999999999888999999999999999999665555 7889999999999999999988889999999999999
Q ss_pred EeecCcCCccCccc--ccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCC--CCCCEEEcc
Q 038552 85 NVGENRFSGMFPRS--ICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNA--SNLEILDLT 160 (659)
Q Consensus 85 ~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~ 160 (659)
++++|.+++.+|.. ++++++|++|++++|.+++..+...+..+++|++|++++|.+++..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999998766665 89999999999999999855443333489999999999999998888888877 899999999
Q ss_pred CCCCccccccccCCCCC------CCEEECCCCCCCCCCCCCcc------------------------------ccccccC
Q 038552 161 SNQLKGKVSIDFSSLKN------LSWLNLEQNNLGMGTANDLD------------------------------FVTFLTN 204 (659)
Q Consensus 161 ~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~~~------------------------------~~~~l~~ 204 (659)
+|.+.+..+..++.+.+ |+.|++++|.+++.....+. ....+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 99998888877776665 99999999876543221110 0011111
Q ss_pred --CCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCc
Q 038552 205 --CSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQ 282 (659)
Q Consensus 205 --~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 282 (659)
+++|+.|++++|.+.+..|..+..+. +|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..|..+++|+
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred cccCCccEEECCCCcccccChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 36788999998888877677676665 788999999988888888888889999999999988888888888899999
Q ss_pred EEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEE--------------------eCCCcccccc
Q 038552 283 QLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMF--------------------NASRNKLTGA 342 (659)
Q Consensus 283 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L--------------------~l~~n~l~~~ 342 (659)
.|++++|.+.+..+..|..+++|++|++++|.+++. + .+++|+.| ++++|++.+.
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSS
T ss_pred EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcccccccccccceeecccCccccC
Confidence 999999988877777888888999999988887732 1 13444444 4444444422
Q ss_pred -cchhhhhcccccceeccccccccCCCcc-ccccCCCCceeecCCCccc-----ccCCccccCCCCCCeEECCCCCCCCC
Q 038552 343 -LPHQLLSITTLTLSLDLSNNLLNGSLPL-QVGNLKNLVKLDISGNQFS-----GVIPVTLSACVSLEYLNISRNFFHGI 415 (659)
Q Consensus 343 -~~~~~~~~~~l~~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~l~~n~l~~~ 415 (659)
.+..+..++.++ .|++++|.+.+..+. .+..+++|++|+|++|.++ +..+..|.++++|++|+|++|.+++.
T Consensus 417 ~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 495 (844)
T 3j0a_A 417 DILYFLLRVPHLQ-ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495 (844)
T ss_dssp TTHHHHTTCTTCC-EEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTC
T ss_pred chhhhhhcCCccc-eeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccccc
Confidence 112244677777 888888888765433 3566788999999999886 34456688899999999999999988
Q ss_pred CcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCccc
Q 038552 416 IPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGG 487 (659)
Q Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 487 (659)
.|..|.++++|+.|+|++|.+++..|..+. ++|+.|++++|++++..|.. +.++..+++++||+.|..
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICEC 563 (844)
T ss_dssp CTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSS
T ss_pred ChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccc
Confidence 888899999999999999999987766665 78999999999999888753 678899999999999954
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.2e-50 Score=438.01 Aligned_cols=446 Identities=20% Similarity=0.200 Sum_probs=389.1
Q ss_pred CCCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCC
Q 038552 2 NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNL 81 (659)
Q Consensus 2 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 81 (659)
+|+++++|++|++++|.+++..|.+|.++++|++|++++|.+++..|.+|+++++|++|++++|.+.+..+..|+++++|
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 58899999999999999998889999999999999999999998889999999999999999999987777889999999
Q ss_pred CEEEeecCcCCc-cCcccccCCCCCCEEeccCccccccChHHHhcCCCC----CcEEEccCCcCCcccChhccCCCCCCE
Q 038552 82 VDLNVGENRFSG-MFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPN----LKALAIGGNNFFGSIPNSLSNASNLEI 156 (659)
Q Consensus 82 ~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~----L~~L~l~~n~~~~~~~~~l~~l~~L~~ 156 (659)
++|++++|.+++ .+|..++++++|++|++++|.+++..|..+. .+.+ ++++++++|.+++..+..+... +|+.
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~ 208 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ-FLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHE 208 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH-HHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh-hhhccccccceeeccCCCcceeCcccccCc-eeee
Confidence 999999999986 5799999999999999999999855554443 3443 4478888888876555544443 7888
Q ss_pred EEccCCCCc----------------------------------------------------------cccccccCCCCCC
Q 038552 157 LDLTSNQLK----------------------------------------------------------GKVSIDFSSLKNL 178 (659)
Q Consensus 157 L~l~~n~l~----------------------------------------------------------~~~~~~l~~l~~L 178 (659)
|++++|.+. +..+. +..+++|
T Consensus 209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L 287 (606)
T 3vq2_A 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANV 287 (606)
T ss_dssp EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTC
T ss_pred eeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCC
Confidence 888777553 22333 6677889
Q ss_pred CEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcC
Q 038552 179 SWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLI 258 (659)
Q Consensus 179 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 258 (659)
+.|++++|.+.. ++ .+..+++|++|++++|.+ +.+|.. .+. +|+.|++++|...+.+ .+..+++|+
T Consensus 288 ~~L~l~~~~~~~-------l~-~l~~~~~L~~L~l~~n~l-~~lp~~--~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~ 353 (606)
T 3vq2_A 288 SAMSLAGVSIKY-------LE-DVPKHFKWQSLSIIRCQL-KQFPTL--DLP-FLKSLTLTMNKGSISF--KKVALPSLS 353 (606)
T ss_dssp SEEEEESCCCCC-------CC-CCCTTCCCSEEEEESCCC-SSCCCC--CCS-SCCEEEEESCSSCEEC--CCCCCTTCC
T ss_pred CEEEecCccchh-------hh-hccccccCCEEEcccccC-cccccC--CCC-ccceeeccCCcCccch--hhccCCCCC
Confidence 999999988753 22 678899999999999999 688844 444 8999999999666544 567999999
Q ss_pred eeecccccCCCC--CCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccC-ccCcCCCCCCEEeCC
Q 038552 259 ALTMEINKLHGT--IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIP-SSLGNCQILRMFNAS 335 (659)
Q Consensus 259 ~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~ 335 (659)
.|++++|.+++. .+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..| ..+..+++|+.|+++
T Consensus 354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred EEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence 999999999876 47889999999999999999884 66889999999999999999998777 689999999999999
Q ss_pred CcccccccchhhhhcccccceeccccccccC-CCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCC
Q 038552 336 RNKLTGALPHQLLSITTLTLSLDLSNNLLNG-SLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG 414 (659)
Q Consensus 336 ~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 414 (659)
+|.+.+..|..+..++.++ .|++++|.+.+ .+|..+..+++|++|+|++|++++..|..+..+++|++|++++|++.+
T Consensus 433 ~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 433 YTNTKIDFDGIFLGLTSLN-TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp TSCCEECCTTTTTTCTTCC-EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCCccchhhhcCCCCCC-EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 9999999999999999998 99999999997 478889999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCEEECCCCcccccchhhhcCCC-CCCeeeCcCCcCcccCCCC
Q 038552 415 IIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLS-FMEFLDLSYNHFEGEVPKK 467 (659)
Q Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~l~l~~n~l~~~~p~~ 467 (659)
..|..+.++++|+.|++++|+++ .+|..+..++ +|+.+++++|++.+.++..
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred cCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 99999999999999999999998 5666688887 5999999999999988853
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.1e-49 Score=437.29 Aligned_cols=466 Identities=22% Similarity=0.256 Sum_probs=344.6
Q ss_pred CCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEe
Q 038552 7 SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNV 86 (659)
Q Consensus 7 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 86 (659)
+++++|++++|.+++..+..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+.+..+..|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 58999999999999887888999999999999999999888999999999999999999997665567999999999999
Q ss_pred ecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhcc--CCCCCCEEEccCCCC
Q 038552 87 GENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLS--NASNLEILDLTSNQL 164 (659)
Q Consensus 87 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n~l 164 (659)
++|.+++..|..|+++++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..+. .+++|+.|++++|.+
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV-QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSS-CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhc-ccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 99999977778999999999999999999865555554 799999999999999987776654 568999999999999
Q ss_pred ccccccccCCCC---------------------------CCCEEECCCCCCCCCCCCCccccccccCCC--CCcEEEccC
Q 038552 165 KGKVSIDFSSLK---------------------------NLSWLNLEQNNLGMGTANDLDFVTFLTNCS--SLKVISLYA 215 (659)
Q Consensus 165 ~~~~~~~l~~l~---------------------------~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~--~L~~L~l~~ 215 (659)
++..+..+..++ +|+.|++++|.+.+. .+..+..++ +|++|++++
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~------~~~~~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT------SNTTFLGLKWTNLTMLDLSY 257 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE------CTTTTGGGGGSCCCEEECTT
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc------ChhHhhccCcCCCCEEECCC
Confidence 887777665543 455555555555442 122333332 377777777
Q ss_pred CccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCC-----CCCc----cccCCCCCcEEEc
Q 038552 216 NQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHG-----TIPD----TIGELKNLQQLSL 286 (659)
Q Consensus 216 n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-----~~~~----~~~~~~~L~~L~l 286 (659)
|.+.+..|..+..+. +|+.|++++|.+++..|..+..+++|+.|++++|...+ .+|. .|..+++|++|++
T Consensus 258 n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l 336 (680)
T 1ziw_A 258 NNLNVVGNDSFAWLP-QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336 (680)
T ss_dssp SCCCEECTTTTTTCT-TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred CCcCccCcccccCcc-cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence 766655555555554 67777777776666666555555555555555443322 1111 3445555556666
Q ss_pred cCCCCCCCCCccccCCCCCcEEE----------------------------ccCCccccccCccCcCCCCCCEEeCCCcc
Q 038552 287 YNNSLQGSIPSSLGNLTKLVELP----------------------------LSYNNLQGNIPSSLGNCQILRMFNASRNK 338 (659)
Q Consensus 287 ~~n~l~~~~~~~~~~l~~L~~L~----------------------------l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 338 (659)
++|.+.+..+..|..+++|++|+ +++|.+++..|..+..+++|+.|++++|.
T Consensus 337 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 416 (680)
T 1ziw_A 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416 (680)
T ss_dssp CSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc
Confidence 66655555555555554444444 44555555667778888899999999998
Q ss_pred cccccc-hhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccc--ccCCccccCCCCCCeEECCCCCCCCC
Q 038552 339 LTGALP-HQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFS--GVIPVTLSACVSLEYLNISRNFFHGI 415 (659)
Q Consensus 339 l~~~~~-~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~ 415 (659)
+.+.+| ..+..++.++ +|++++|.+.+..+..+..+++|++|++++|.+. +..|..+..+++|++|++++|.+++.
T Consensus 417 l~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i 495 (680)
T 1ziw_A 417 IGQELTGQEWRGLENIF-EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495 (680)
T ss_dssp CEEECCSGGGTTCTTCC-EEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC
T ss_pred CccccCcccccCccccc-EEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcC
Confidence 887666 5677788887 8888888888777777888888888888888775 45677778888888888888888877
Q ss_pred CcccccCCCCCCEEECCCCcccccch--------hhhcCCCCCCeeeCcCCcCcccCCC--CCccCCcccccccCCC
Q 038552 416 IPLSLSSLKSIKEFNVSSNNLSGLIP--------EFLKNLSFMEFLDLSYNHFEGEVPK--KGVFSNKTKISLQGNV 482 (659)
Q Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~l~~l~~L~~l~l~~n~l~~~~p~--~~~~~~~~~~~~~~n~ 482 (659)
.+..|.++++|+.|++++|.+++..+ ..+..+++|+.|++++|.+. .+|. .....+++.+++++|.
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCC
Confidence 77777888888888888888775422 23567778888888888777 3443 3455677777777764
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-49 Score=429.56 Aligned_cols=448 Identities=21% Similarity=0.226 Sum_probs=290.6
Q ss_pred CCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEe
Q 038552 7 SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNV 86 (659)
Q Consensus 7 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 86 (659)
+++++|++++|.+++..+.+|.++++|++|++++|.+.+..+.+|+++++|++|++++|.+.+..|..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 47999999999999888889999999999999999999888888999999999999999998877889999999999999
Q ss_pred ecCcCCccCcccccCCCCCCEEeccCccccc-cChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCC----CEEEccC
Q 038552 87 GENRFSGMFPRSICNISSLEWIYLPFNRFSG-SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNL----EILDLTS 161 (659)
Q Consensus 87 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~l~~ 161 (659)
++|.+++..+..++++++|++|++++|.+++ .+|..+. .+++|++|++++|.+++..+..++.+++| +.+++++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhc-ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 9999986666679999999999999999875 4677776 79999999999999998878888888888 8999999
Q ss_pred CCCccccccccCCCCCCCEEECCCCCCCCC-------------------------------CCCC---------------
Q 038552 162 NQLKGKVSIDFSSLKNLSWLNLEQNNLGMG-------------------------------TAND--------------- 195 (659)
Q Consensus 162 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-------------------------------~~~~--------------- 195 (659)
|.+.+..+..+... +|+.|++++|..... ....
T Consensus 187 n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 99998888777765 789998887632210 0000
Q ss_pred ------ccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCC
Q 038552 196 ------LDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHG 269 (659)
Q Consensus 196 ------~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 269 (659)
...+..+..+++|+.|++++|.+. .+|..+... +++.|++++|.+. .+|. ..+++|+.|++++|.+.+
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCC
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccc
Confidence 001122333445555555555444 344443333 4555555555544 3332 244455555555555444
Q ss_pred CCCccccCCCCCcEEEccCCCCCCCC--CccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccc-hh
Q 038552 270 TIPDTIGELKNLQQLSLYNNSLQGSI--PSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALP-HQ 346 (659)
Q Consensus 270 ~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~ 346 (659)
..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+..+ ..
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCT
T ss_pred cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhh
Confidence 3332 34555555555555554322 3444555555555555555543222 25555555555555555554333 23
Q ss_pred hhhcccccceeccccccccCCCccccccCCCCceeecCCCccc-ccCCccccCCCCCCeEECCCCCCCCCCcccccCCCC
Q 038552 347 LLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFS-GVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKS 425 (659)
Q Consensus 347 ~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 425 (659)
+..++.++ .|++++|.+.+..|..+..+++|++|+|++|.++ +.+|..+..+++|++|++++|.+++..|..+..+++
T Consensus 417 ~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 417 FLSLRNLI-YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTCTTCC-EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhcCCCCC-EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 44455554 5555555555555555555555555555555554 344555555555555555555555555555555555
Q ss_pred CCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552 426 IKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK 466 (659)
Q Consensus 426 L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~ 466 (659)
|+.|++++|.+++..|..+..+++|+.|++++|++.|.+|.
T Consensus 496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 55555555555555445555555555555555555555553
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.7e-47 Score=411.29 Aligned_cols=457 Identities=21% Similarity=0.238 Sum_probs=382.4
Q ss_pred CCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeec
Q 038552 9 LIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGE 88 (659)
Q Consensus 9 L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 88 (659)
.+.++-++..++ .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 456777777777 5676554 5799999999999988888999999999999999999888788999999999999999
Q ss_pred CcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCc-ccChhccCCCCCCEEEccCCCCccc
Q 038552 89 NRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFG-SIPNSLSNASNLEILDLTSNQLKGK 167 (659)
Q Consensus 89 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~ 167 (659)
|.+++..|..|+++++|++|++++|.++ .++......+++|++|++++|.+++ .+|..++++++|++|++++|.+++.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred CcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 9999888899999999999999999998 5554333489999999999999987 4689999999999999999999988
Q ss_pred cccccCCCCCC----CEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCC---------------------------
Q 038552 168 VSIDFSSLKNL----SWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYAN--------------------------- 216 (659)
Q Consensus 168 ~~~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n--------------------------- 216 (659)
.+..++.+.+| +.+++++|.+..... ..+..+ +|+.|++++|
T Consensus 165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~------~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQP------GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECT------TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred cHHHccchhccchhhhhcccCCCCceecCH------HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 88888888888 899999999876432 222222 5667766665
Q ss_pred -------------------------------ccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccc
Q 038552 217 -------------------------------QFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEIN 265 (659)
Q Consensus 217 -------------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 265 (659)
.+.+..|..+..+. +++.+++++|.++ .+|..+..+ +|+.|++++|
T Consensus 238 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n 314 (570)
T 2z63_A 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT-NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNC 314 (570)
T ss_dssp CCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT-TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESC
T ss_pred cCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC-cccEEEecCccch-hhhhhhccC-CccEEeeccC
Confidence 22333444444444 7888888888777 477777777 8888888888
Q ss_pred cCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCcccccc--CccCcCCCCCCEEeCCCccccccc
Q 038552 266 KLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNI--PSSLGNCQILRMFNASRNKLTGAL 343 (659)
Q Consensus 266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~ 343 (659)
.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..
T Consensus 315 ~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 389 (570)
T 2z63_A 315 KFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389 (570)
T ss_dssp BCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred ccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc
Confidence 877 4444 4678888888888887765554 67899999999999988654 677888999999999999998544
Q ss_pred chhhhhcccccceeccccccccCCCc-cccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCC-CCCccccc
Q 038552 344 PHQLLSITTLTLSLDLSNNLLNGSLP-LQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFH-GIIPLSLS 421 (659)
Q Consensus 344 ~~~~~~~~~l~~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~ 421 (659)
+ .+..++.++ .|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+. +.+|..+.
T Consensus 390 ~-~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~ 467 (570)
T 2z63_A 390 S-NFLGLEQLE-HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467 (570)
T ss_dssp E-EEETCTTCC-EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred c-cccccCCCC-EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh
Confidence 4 488889998 89999999987766 56889999999999999999989999999999999999999997 57888999
Q ss_pred CCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC-CccCCcccccccCCCCCcc
Q 038552 422 SLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GVFSNKTKISLQGNVKLCG 486 (659)
Q Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~lc~ 486 (659)
.+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|.. ..+++++.+++++|++.|.
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 9999999999999999988999999999999999999999876653 5678889999999999885
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-47 Score=430.32 Aligned_cols=446 Identities=19% Similarity=0.217 Sum_probs=374.3
Q ss_pred CCCCCCCCCEEEccCCcccccC-chhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccc--cCCC
Q 038552 2 NLSRYSNLIELRVSKNKLEGQI-PEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTT--LGLL 78 (659)
Q Consensus 2 ~~~~~~~L~~L~ls~n~~~~~~-~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l 78 (659)
+|+++++|++|+|++|...+.+ |.+|.++++|++|++++|.+.+..|.+|.++++|++|+|++|.+.+.+|.. |+++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 5889999999999999665555 888999999999999999999888999999999999999999998766665 8999
Q ss_pred CCCCEEEeecCcCCccCc-ccccCCCCCCEEeccCccccccChHHHhcCC--CCCcEEEccCCcCCcccChhccCCCC--
Q 038552 79 RNLVDLNVGENRFSGMFP-RSICNISSLEWIYLPFNRFSGSLPLDIAVNL--PNLKALAIGGNNFFGSIPNSLSNASN-- 153 (659)
Q Consensus 79 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~-- 153 (659)
++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+. .+ ++|+.|++++|.+.+..|..+..+++
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccCCccceEECCCCccccccccchhhcCCcc
Confidence 999999999999987655 5799999999999999999876676665 45 78999999999998888877777665
Q ss_pred ----CCEEEccCCCCccccccccC------------------------------------C--CCCCCEEECCCCCCCCC
Q 038552 154 ----LEILDLTSNQLKGKVSIDFS------------------------------------S--LKNLSWLNLEQNNLGMG 191 (659)
Q Consensus 154 ----L~~L~l~~n~l~~~~~~~l~------------------------------------~--l~~L~~L~l~~n~l~~~ 191 (659)
|+.|++++|.+.+..+..+. . .++|+.|++++|.+..
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~- 280 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS- 280 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc-
Confidence 99999999977654443322 1 2678999999988865
Q ss_pred CCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCC
Q 038552 192 TANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTI 271 (659)
Q Consensus 192 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 271 (659)
..+..+..+++|+.|++++|.+.+..|..+..+. +|+.|++++|.+++..|..+..+++|+.|++++|.+.+..
T Consensus 281 -----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 354 (844)
T 3j0a_A 281 -----LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354 (844)
T ss_dssp -----ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC
T ss_pred -----cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC
Confidence 3345677889999999999999887787777776 8999999999999888889999999999999999998888
Q ss_pred CccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCc----------------------cCcCCCCC
Q 038552 272 PDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPS----------------------SLGNCQIL 329 (659)
Q Consensus 272 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~~~~L 329 (659)
+..|..+++|++|++++|.+.+. + .+++|+.|++++|.+. .+|. .+..+++|
T Consensus 355 ~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 355 DQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHL 428 (844)
T ss_dssp SSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred hhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCcc
Confidence 88899999999999999988742 2 2566666666666655 2222 23478999
Q ss_pred CEEeCCCcccccccch-hhhhcccccceecccccccc-----CCCccccccCCCCceeecCCCcccccCCccccCCCCCC
Q 038552 330 RMFNASRNKLTGALPH-QLLSITTLTLSLDLSNNLLN-----GSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLE 403 (659)
Q Consensus 330 ~~L~l~~n~l~~~~~~-~~~~~~~l~~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 403 (659)
+.|++++|++++..+. .+..++.++ .|++++|.+. +..+..+..+++|++|+|++|++++..|..|..+++|+
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~-~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 507 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSENPSLE-QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCSCTTCC-BCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCS
T ss_pred ceeeCCCCcccccccccccccCCccc-cccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhh
Confidence 9999999999865443 344567787 8999999997 44456788999999999999999999999999999999
Q ss_pred eEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC
Q 038552 404 YLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK 467 (659)
Q Consensus 404 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~ 467 (659)
+|+|++|++++..+..+. ++|+.|++++|.+++.+|..+ ++|+.+++++|++.|.++..
T Consensus 508 ~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 508 GLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS 566 (844)
T ss_dssp EEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC
T ss_pred eeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH
Confidence 999999999987777665 899999999999999988765 47899999999999988753
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.1e-48 Score=426.25 Aligned_cols=433 Identities=21% Similarity=0.291 Sum_probs=252.3
Q ss_pred CCCEEEccCCcccccCchhhcCCCCCcEEeccccCC------Cc------cccccccCCCCCcEEEccCCccCccccccc
Q 038552 8 NLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYL------TG------QLPDFVGNLSALKVFYIIGNSLGGKIPTTL 75 (659)
Q Consensus 8 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~------~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 75 (659)
+++.|+|+++.+.|.+|.+++++++|++|++++|.+ .+ .+|... +..|+ ++++++.+.+..|..+
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDF 158 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGS
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhH
Confidence 566667777766666666677777777777766654 11 222222 33344 4444444444444333
Q ss_pred CC-------------------CCCCCEEEee--cCcCCccCcccccCCCCCCEEeccCcccccc----------------
Q 038552 76 GL-------------------LRNLVDLNVG--ENRFSGMFPRSICNISSLEWIYLPFNRFSGS---------------- 118 (659)
Q Consensus 76 ~~-------------------l~~L~~L~l~--~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~---------------- 118 (659)
.. ...++.+.+. .|.+++ +|..++++++|++|++++|.+++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 31 0111111111 345555 566666666666666666666643
Q ss_pred -ChHHHh-cCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCC-Ccc-ccccccCCC------CCCCEEECCCCCC
Q 038552 119 -LPLDIA-VNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQ-LKG-KVSIDFSSL------KNLSWLNLEQNNL 188 (659)
Q Consensus 119 -~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~l 188 (659)
+|..++ ..+++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++.+ ++|++|++++|.+
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 555442 145666666666666666666666666666666666665 665 555555544 6666666666665
Q ss_pred CCCCCCCccccc--cccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCC-cCeeecccc
Q 038552 189 GMGTANDLDFVT--FLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVN-LIALTMEIN 265 (659)
Q Consensus 189 ~~~~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~n 265 (659)
+ .++. .+..+++|++|++++|.+.|.+| .+..+. +|+.|++++|.++ .+|..+..+++ |++|++++|
T Consensus 318 ~-------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 318 K-------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp S-------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred C-------ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence 4 2333 45566666666666666666666 444444 5666666666666 56666666666 666666666
Q ss_pred cCCCCCCccccCCC--CCcEEEccCCCCCCCCCcccc-------CCCCCcEEEccCCccccccCccCcCCCCCCEEeCCC
Q 038552 266 KLHGTIPDTIGELK--NLQQLSLYNNSLQGSIPSSLG-------NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASR 336 (659)
Q Consensus 266 ~l~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 336 (659)
.++ .+|..+..+. +|++|++++|.+.+..|..+. .+++|++|++++|.++...+..+..+++|+.|++++
T Consensus 388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 666 5555555433 666666666666666666665 556666666666666632222344566666666666
Q ss_pred cccccccchhhhhcc--------cccceeccccccccCCCccccc--cCCCCceeecCCCcccccCCccccCCCCCCeEE
Q 038552 337 NKLTGALPHQLLSIT--------TLTLSLDLSNNLLNGSLPLQVG--NLKNLVKLDISGNQFSGVIPVTLSACVSLEYLN 406 (659)
Q Consensus 337 n~l~~~~~~~~~~~~--------~l~~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 406 (659)
|.++ .+|....... .++ .|++++|.+. .+|..+. .+++|++|+|++|++++ +|..+..+++|++|+
T Consensus 467 N~l~-~i~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~ 542 (636)
T 4eco_A 467 NMLT-EIPKNSLKDENENFKNTYLLT-SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG 542 (636)
T ss_dssp SCCS-BCCSSSSEETTEECTTGGGCC-EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEE
T ss_pred CCCC-CcCHHHhccccccccccCCcc-EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEE
Confidence 6666 4554433322 454 5666666666 4555554 66666666666666665 566666666666666
Q ss_pred C------CCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcc
Q 038552 407 I------SRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEG 462 (659)
Q Consensus 407 l------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~ 462 (659)
| ++|.+.+.+|..+..+++|+.|++++|.+ +.+|..+. ++|+.|++++|++..
T Consensus 543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 6 34555566666666666666666666666 34454433 566666666666554
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.5e-46 Score=404.64 Aligned_cols=465 Identities=19% Similarity=0.197 Sum_probs=383.4
Q ss_pred CCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEe
Q 038552 7 SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNV 86 (659)
Q Consensus 7 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 86 (659)
++|++|++++|.+++..|.+|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..|..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 58999999999999888899999999999999999999888899999999999999999998877778999999999999
Q ss_pred ecCcCCc-cCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCc
Q 038552 87 GENRFSG-MFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLK 165 (659)
Q Consensus 87 ~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 165 (659)
++|.+++ ..|..++++++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|..++++++|++|++++|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999986 357789999999999999998555777544458999999999999999989999999999999999999887
Q ss_pred cccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhc---cccCCEEEcccCc
Q 038552 166 GKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANL---SSTMTDFRIGANQ 242 (659)
Q Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~l~~~~ 242 (659)
......+..+++|++|++++|.+++.... .......+++|+.|++++|.+.+..+..+... ...++.+++++|.
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFS---PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCC---CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred ccchhhHhhcccccEEEccCCcccccccc---ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 54444456789999999999998764321 11233467899999999999887666555432 2378999999998
Q ss_pred ccccC------CcccccCCCcCeeecccccCCCC-----CCccccCCCCCcEEEccCCCCCCCCCccc-cCCCCCcEEEc
Q 038552 243 ISGTI------PPGIRNLVNLIALTMEINKLHGT-----IPDTIGELKNLQQLSLYNNSLQGSIPSSL-GNLTKLVELPL 310 (659)
Q Consensus 243 ~~~~~------~~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l 310 (659)
+.+.. ...+..+++|+.+++.++.+... ++..+...++|+.|++++|.+. .+|..+ ..+++|++|++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~L 341 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDL 341 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEEC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEc
Confidence 77531 12356778899999988876532 1222344678999999999987 666655 57999999999
Q ss_pred cCCccccccC---ccCcCCCCCCEEeCCCcccccccc--hhhhhcccccceeccccccccCCCccccccCCCCceeecCC
Q 038552 311 SYNNLQGNIP---SSLGNCQILRMFNASRNKLTGALP--HQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISG 385 (659)
Q Consensus 311 ~~n~l~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 385 (659)
++|.+.+.+| ..++.+++|+.|++++|++++..+ ..+..++.++ .|++++|++. .+|..+..+++|++|++++
T Consensus 342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~-~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT-SLDISRNTFH-PMPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC-EEECTTCCCC-CCCSCCCCCTTCCEEECTT
T ss_pred cCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC-EEECCCCCCc-cCChhhcccccccEEECCC
Confidence 9999997664 347889999999999999985432 4578889998 9999999998 6788899999999999999
Q ss_pred CcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCC
Q 038552 386 NQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVP 465 (659)
Q Consensus 386 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p 465 (659)
|.+++ +|..+ .++|++|++++|++++.+ ..+++|+.|++++|+++ .+|. ...+++|+.|++++|++++..|
T Consensus 420 N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 420 TGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp SCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred CCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence 99974 34333 268999999999998653 57899999999999998 4565 4678999999999999998777
Q ss_pred C-CCccCCcccccccCCCCCcc
Q 038552 466 K-KGVFSNKTKISLQGNVKLCG 486 (659)
Q Consensus 466 ~-~~~~~~~~~~~~~~n~~lc~ 486 (659)
. ...+.+++.+++++|++.|.
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 491 GIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp TGGGGCTTCCEEECCSSCBCCC
T ss_pred HHHhcCcccCEEEecCCCccCC
Confidence 5 35678899999999999884
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.8e-46 Score=399.30 Aligned_cols=437 Identities=19% Similarity=0.235 Sum_probs=258.8
Q ss_pred EEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCc
Q 038552 11 ELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENR 90 (659)
Q Consensus 11 ~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 90 (659)
+||+++|.++ .+|..+. ++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|..|+++++|++|++++|.
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 4555555554 3444433 455555555555554444455555555555555555544445555555555555555555
Q ss_pred CCccCcccccCCCCCCEEeccCccccc-cChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCC--CEEEccCCCC--c
Q 038552 91 FSGMFPRSICNISSLEWIYLPFNRFSG-SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNL--EILDLTSNQL--K 165 (659)
Q Consensus 91 l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~ 165 (659)
++ .+|.. .+++|++|++++|.+++ .+|..+. .+++|++|++++|.+++ ..+..+++| +.|++++|.+ .
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGG-GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhc-cCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 54 23333 45555555555555543 2333333 45555555555555443 233444444 5555555554 3
Q ss_pred cccccc--------------------------cCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccc
Q 038552 166 GKVSID--------------------------FSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFG 219 (659)
Q Consensus 166 ~~~~~~--------------------------l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 219 (659)
+..|.. +..+++|+.+++++|.............+.+..+++|+.|++++|.+.
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence 333333 344555555555555310000000011224556667777777766665
Q ss_pred cccChhHHhc--cccCCEEEcccCcccccCCccc-----ccCCCcCeeecccccCCCCCC-ccccCC---CCCcEEEccC
Q 038552 220 GELPHSIANL--SSTMTDFRIGANQISGTIPPGI-----RNLVNLIALTMEINKLHGTIP-DTIGEL---KNLQQLSLYN 288 (659)
Q Consensus 220 ~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~~~~~---~~L~~L~l~~ 288 (659)
+..+..+... ..+++.|++++|.+++.+|..+ ..++.|+.+++++|.+ .+| ..+..+ .+|+.|++++
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence 4333222211 1267777777777777777776 7777777777777777 344 334333 5677777777
Q ss_pred CCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCccccc--ccchhhhhcccccceeccccccccC
Q 038552 289 NSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTG--ALPHQLLSITTLTLSLDLSNNLLNG 366 (659)
Q Consensus 289 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~l~~~L~l~~n~l~~ 366 (659)
|.+.... .+..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+..++.++ .|++++|.+.+
T Consensus 312 n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~-~L~Ls~N~l~~ 388 (520)
T 2z7x_B 312 TRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ-QLDISQNSVSY 388 (520)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCC-EEECCSSCCBC
T ss_pred Ccccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCC-EEECCCCcCCc
Confidence 7765332 12567777888888887777777777777778888888877775 4556677777777 77777777776
Q ss_pred CCcc-ccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhc
Q 038552 367 SLPL-QVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLK 445 (659)
Q Consensus 367 ~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 445 (659)
.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+.
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 465 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhc
Confidence 4554 366777777777777777766665544 67777777777777 5666666777777777777777744333467
Q ss_pred CCCCCCeeeCcCCcCcccCC
Q 038552 446 NLSFMEFLDLSYNHFEGEVP 465 (659)
Q Consensus 446 ~l~~L~~l~l~~n~l~~~~p 465 (659)
.+++|+.|++++|++.|.++
T Consensus 466 ~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCTTCCEEECCSSCBCCCHH
T ss_pred cCCcccEEECcCCCCcccCC
Confidence 77777777777777777665
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.3e-46 Score=412.15 Aligned_cols=411 Identities=21% Similarity=0.246 Sum_probs=225.6
Q ss_pred CCCCEEEccCCcccccCchhhcCCCCCcEEec-cccCCCccccccc----------------------------------
Q 038552 7 SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAI-DFNYLTGQLPDFV---------------------------------- 51 (659)
Q Consensus 7 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l-s~~~~~~~~~~~~---------------------------------- 51 (659)
.+++.|+|+++.+.|.+|.+|+++++|++|+| ++|.+.|..|-..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 35777888888888888888888888888888 6666554422110
Q ss_pred -----------------cCCCCCcEEEccC--CccCcccccccCCCCCCCEEEeecCcCCc-----------------cC
Q 038552 52 -----------------GNLSALKVFYIIG--NSLGGKIPTTLGLLRNLVDLNVGENRFSG-----------------MF 95 (659)
Q Consensus 52 -----------------~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------~~ 95 (659)
.....++.+.+.. |.+.+ +|..|+++++|++|+|++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0111222222222 44444 55556666666666666666655 25
Q ss_pred ccccc--CCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCc-CCc-ccChhccCCC-------CCCEEEccCCCC
Q 038552 96 PRSIC--NISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNN-FFG-SIPNSLSNAS-------NLEILDLTSNQL 164 (659)
Q Consensus 96 ~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~l~~l~-------~L~~L~l~~n~l 164 (659)
|..++ ++++|++|++++|.+.+.+|..+. .+++|+.|++++|+ +++ .+|..+++++ +|+.|++++|.+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 55544 555555555555555555554444 45555555555554 544 4444443333 555555555555
Q ss_pred cccccc--ccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCc
Q 038552 165 KGKVSI--DFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQ 242 (659)
Q Consensus 165 ~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 242 (659)
+ .+|. .++++++|+.|++++|.++. ++ .+..+++|+.|++++|.+.
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-------lp-~~~~L~~L~~L~Ls~N~l~----------------------- 608 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVRH-------LE-AFGTNVKLTDLKLDYNQIE----------------------- 608 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCCB-------CC-CCCTTSEESEEECCSSCCS-----------------------
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCccc-------ch-hhcCCCcceEEECcCCccc-----------------------
Confidence 5 4444 45555555555555555431 11 3444455555555555444
Q ss_pred ccccCCcccccCCC-cCeeecccccCCCCCCccccCCCC--CcEEEccCCCCCCCCCccc---c--CCCCCcEEEccCCc
Q 038552 243 ISGTIPPGIRNLVN-LIALTMEINKLHGTIPDTIGELKN--LQQLSLYNNSLQGSIPSSL---G--NLTKLVELPLSYNN 314 (659)
Q Consensus 243 ~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~ 314 (659)
.+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|... . .+++|+.|++++|.
T Consensus 609 ---~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 609 ---EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp ---CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred ---cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence 44444555555 555555555554 44444443322 5555555555554433211 1 22355555555555
Q ss_pred cccccCccC-cCCCCCCEEeCCCcccccccchhhhhc--------ccccceeccccccccCCCccccc--cCCCCceeec
Q 038552 315 LQGNIPSSL-GNCQILRMFNASRNKLTGALPHQLLSI--------TTLTLSLDLSNNLLNGSLPLQVG--NLKNLVKLDI 383 (659)
Q Consensus 315 l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~--------~~l~~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L 383 (659)
+. .+|..+ ..+++|+.|++++|.+. .+|..++.. +.++ .|+|++|++. .+|..+. .+++|+.|+|
T Consensus 685 L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~-~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~L 760 (876)
T 4ecn_A 685 IQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLT-TIDLRFNKLT-SLSDDFRATTLPYLSNMDV 760 (876)
T ss_dssp CC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCC-EEECCSSCCC-CCCGGGSTTTCTTCCEEEC
T ss_pred CC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCcc-EEECCCCCCc-cchHHhhhccCCCcCEEEe
Confidence 55 333332 34555555555555555 444433322 2454 5666666665 4555554 6666666666
Q ss_pred CCCcccccCCccccCCCCCCeEECCC------CCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcC
Q 038552 384 SGNQFSGVIPVTLSACVSLEYLNISR------NFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSY 457 (659)
Q Consensus 384 ~~n~l~~~~~~~~~~~~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~ 457 (659)
++|++++ +|..+..+++|++|+|++ |.+.+.+|..+.++++|+.|+|++|.+ +.+|..+. ++|+.|++++
T Consensus 761 s~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~ 836 (876)
T 4ecn_A 761 SYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIAD 836 (876)
T ss_dssp CSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCS
T ss_pred CCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCC
Confidence 6666665 566666666666666654 666667777777777777777777777 55666544 5777777777
Q ss_pred CcCccc
Q 038552 458 NHFEGE 463 (659)
Q Consensus 458 n~l~~~ 463 (659)
|++...
T Consensus 837 N~l~~i 842 (876)
T 4ecn_A 837 NPNISI 842 (876)
T ss_dssp CTTCEE
T ss_pred CCCCcc
Confidence 776543
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-46 Score=410.83 Aligned_cols=435 Identities=17% Similarity=0.260 Sum_probs=369.0
Q ss_pred CCCcEEeccccCCCccccccccCCCCCcEEEccCCcc------Cc------ccccccCCCCCCCEEEeecCcCCccCccc
Q 038552 31 LNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSL------GG------KIPTTLGLLRNLVDLNVGENRFSGMFPRS 98 (659)
Q Consensus 31 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l------~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 98 (659)
.+++.|+|+++.+.|.+|.+++++++|++|+|++|.+ .+ .+|... +..|+ ++++.+.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 4788999999999999999999999999999998865 12 233322 44566 777777777666665
Q ss_pred ccC-------------------CCCCCEEecc--CccccccChHHHhcCCCCCcEEEccCCcCCcc--------------
Q 038552 99 ICN-------------------ISSLEWIYLP--FNRFSGSLPLDIAVNLPNLKALAIGGNNFFGS-------------- 143 (659)
Q Consensus 99 ~~~-------------------l~~L~~L~l~--~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------- 143 (659)
+.. ...++.+.+. .|.+++ +|..+. .+++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHh-cccCCCEEECcCCccccccccccccccccchh
Confidence 552 1122333332 578886 998877 899999999999999985
Q ss_pred ---cChhcc--CCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCC-CCCCCCCCccccccccC------CCCCcEE
Q 038552 144 ---IPNSLS--NASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNN-LGMGTANDLDFVTFLTN------CSSLKVI 211 (659)
Q Consensus 144 ---~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~------~~~L~~L 211 (659)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++. .++..+.. +++|++|
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~-----~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE-----QLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH-----HHHHHHHHHHHSGGGGTCCEE
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc-----cchHHHHhhhccccCCCCCEE
Confidence 899999 99999999999999999999999999999999999998 7641 24444444 4899999
Q ss_pred EccCCccccccCh--hHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCC-CcEEEccC
Q 038552 212 SLYANQFGGELPH--SIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKN-LQQLSLYN 288 (659)
Q Consensus 212 ~l~~n~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~ 288 (659)
++++|.++ .+|. .+..+. +|+.|++++|.++|.+| .++.+++|+.|++++|.+. .+|..+..+++ |++|++++
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred ECCCCcCC-ccCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 99999999 8888 888876 89999999999999999 9999999999999999998 78888999999 99999999
Q ss_pred CCCCCCCCccccCCC--CCcEEEccCCccccccCccCc-------CCCCCCEEeCCCcccccccchhhh-hcccccceec
Q 038552 289 NSLQGSIPSSLGNLT--KLVELPLSYNNLQGNIPSSLG-------NCQILRMFNASRNKLTGALPHQLL-SITTLTLSLD 358 (659)
Q Consensus 289 n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~~L~ 358 (659)
|.+. .+|..+..++ +|++|++++|.+.+..|..+. .+++|+.|++++|.++ .+|..+. .++.++ .|+
T Consensus 387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~-~L~ 463 (636)
T 4eco_A 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLS-SIN 463 (636)
T ss_dssp SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCS-EEE
T ss_pred CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCC-EEE
Confidence 9999 7888887755 899999999999999998888 7889999999999999 5676655 488898 999
Q ss_pred cccccccCCCcccc-ccC-------CCCceeecCCCcccccCCcccc--CCCCCCeEECCCCCCCCCCcccccCCCCCCE
Q 038552 359 LSNNLLNGSLPLQV-GNL-------KNLVKLDISGNQFSGVIPVTLS--ACVSLEYLNISRNFFHGIIPLSLSSLKSIKE 428 (659)
Q Consensus 359 l~~n~l~~~~~~~l-~~l-------~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 428 (659)
+++|.+. .+|..+ ... ++|++|+|++|+++ .+|..+. .+++|++|+|++|.+.+ +|..+..+++|+.
T Consensus 464 Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~ 540 (636)
T 4eco_A 464 LMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG 540 (636)
T ss_dssp CCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCE
T ss_pred CCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCE
Confidence 9999999 555443 322 39999999999999 6787776 99999999999999997 8889999999999
Q ss_pred EEC------CCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCccc
Q 038552 429 FNV------SSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGG 487 (659)
Q Consensus 429 L~l------~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 487 (659)
|++ ++|.+.+.+|..+..+++|+.|++++|++ +.+|.. .+++++.+++++|+..|-.
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcccc
Confidence 999 56788999999999999999999999999 678865 4489999999999988844
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.1e-45 Score=396.27 Aligned_cols=449 Identities=19% Similarity=0.199 Sum_probs=369.4
Q ss_pred CCCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCc-ccccccCCCCC
Q 038552 2 NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGG-KIPTTLGLLRN 80 (659)
Q Consensus 2 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~ 80 (659)
+|+++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..+..|+++++|++|++++|.+.+ ..|..++++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 58899999999999999998888999999999999999999998888889999999999999999976 45788999999
Q ss_pred CCEEEeecCcCCccCc-ccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEc
Q 038552 81 LVDLNVGENRFSGMFP-RSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDL 159 (659)
Q Consensus 81 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 159 (659)
|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..+. .+++|+.|++++|.+.......+..+++|++|++
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh-ccccCceEecccCcccccchhhHhhcccccEEEc
Confidence 9999999998544554 6899999999999999999977888776 7999999999999987443333467999999999
Q ss_pred cCCCCcccc--c-cccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCcccccc--C----hhHHhcc
Q 038552 160 TSNQLKGKV--S-IDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGEL--P----HSIANLS 230 (659)
Q Consensus 160 ~~n~l~~~~--~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~--~----~~~~~~~ 230 (659)
++|.+++.. + .....+++|+.|++++|.+++.... .+...+..+++|+.+++++|.+.+.. + ..+..+
T Consensus 204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l- 280 (549)
T 2z81_A 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN--ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL- 280 (549)
T ss_dssp ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH--HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC-
T ss_pred cCCccccccccccchhhhhhcccceeccccccchhHHH--HHHHHhhhhccccccccccccccccccccccchhhhhhh-
Confidence 999998752 1 2235678999999999987652221 23345577889999999999876421 1 111222
Q ss_pred ccCCEEEcccCccccc-----CCcccccCCCcCeeecccccCCCCCCccc-cCCCCCcEEEccCCCCCCCCC---ccccC
Q 038552 231 STMTDFRIGANQISGT-----IPPGIRNLVNLIALTMEINKLHGTIPDTI-GELKNLQQLSLYNNSLQGSIP---SSLGN 301 (659)
Q Consensus 231 ~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~---~~~~~ 301 (659)
.+++.+.+.++.+... ++..+....+|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+..| ..++.
T Consensus 281 ~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 359 (549)
T 2z81_A 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359 (549)
T ss_dssp TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTS
T ss_pred cccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhc
Confidence 3788999988876532 2222345678999999999987 566555 579999999999999987654 34788
Q ss_pred CCCCcEEEccCCccccccC--ccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCc
Q 038552 302 LTKLVELPLSYNNLQGNIP--SSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLV 379 (659)
Q Consensus 302 l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~ 379 (659)
+++|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..++.++ .|++++|.+.+ +|..+ .++|+
T Consensus 360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~-~L~Ls~N~l~~-l~~~~--~~~L~ 434 (549)
T 2z81_A 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR-FLNLSSTGIRV-VKTCI--PQTLE 434 (549)
T ss_dssp STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCC-EEECTTSCCSC-CCTTS--CTTCS
T ss_pred cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccccc-EEECCCCCccc-ccchh--cCCce
Confidence 9999999999999985432 45888999999999999998 6888888888998 89999999874 34333 26999
Q ss_pred eeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCc
Q 038552 380 KLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNH 459 (659)
Q Consensus 380 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~ 459 (659)
+|+|++|++++.+ ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++.+|..+..+++|+.|++++|+
T Consensus 435 ~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 435 VLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp EEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred EEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 9999999998653 57899999999999998 5664 5679999999999999999999999999999999999999
Q ss_pred CcccCCC
Q 038552 460 FEGEVPK 466 (659)
Q Consensus 460 l~~~~p~ 466 (659)
+.|.+|.
T Consensus 509 ~~~~~~~ 515 (549)
T 2z81_A 509 WDCSCPR 515 (549)
T ss_dssp BCCCHHH
T ss_pred ccCCCcc
Confidence 9998874
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.1e-45 Score=404.90 Aligned_cols=440 Identities=18% Similarity=0.228 Sum_probs=340.0
Q ss_pred CCCcEEeccccCCCccccccccCCCCCcEEEc-cCCccCcccccccCCC-CCCCE-----E---------Ee-ecCcCCc
Q 038552 31 LNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI-IGNSLGGKIPTTLGLL-RNLVD-----L---------NV-GENRFSG 93 (659)
Q Consensus 31 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l-~~L~~-----L---------~l-~~n~l~~ 93 (659)
.++..|+|+++.+.|.+|.+++++++|++|+| ++|.+.+..|...... ..+.. + .. ....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 56888999999999899999999999999999 7777766533221111 00000 0 00 0000000
Q ss_pred c-----------CcccccCCCCCCEEeccC--ccccccChHHHhcCCCCCcEEEccCCcCCc-----------------c
Q 038552 94 M-----------FPRSICNISSLEWIYLPF--NRFSGSLPLDIAVNLPNLKALAIGGNNFFG-----------------S 143 (659)
Q Consensus 94 ~-----------~~~~~~~l~~L~~L~l~~--n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-----------------~ 143 (659)
. .+........++.+.+.. |.+++ +|..+. .+++|+.|++++|.+++ .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHh-cCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 0 011112223344444433 66765 777665 67788888888887776 3
Q ss_pred cChhcc--CCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCC-CCC-CCCCCcccc-ccccCCCCCcEEEccCCcc
Q 038552 144 IPNSLS--NASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNN-LGM-GTANDLDFV-TFLTNCSSLKVISLYANQF 218 (659)
Q Consensus 144 ~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~-~~l~~~~~L~~L~l~~n~~ 218 (659)
+|..++ ++++|++|++++|.+.+.+|..|+++++|+.|++++|+ +++ .-+..+.-. ..+..+++|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 788877 88999999999998888888888889999999999887 653 111000000 1344566999999999999
Q ss_pred ccccCh--hHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCC-CcEEEccCCCCCCCC
Q 038552 219 GGELPH--SIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKN-LQQLSLYNNSLQGSI 295 (659)
Q Consensus 219 ~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~ 295 (659)
. .+|. .+..+. +|+.|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+
T Consensus 561 ~-~ip~~~~l~~L~-~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 561 E-EFPASASLQKMV-KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp C-BCCCHHHHTTCT-TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred C-ccCChhhhhcCC-CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 8 8888 788876 8999999999998 788 8999999999999999999 88888999999 999999999999 78
Q ss_pred CccccCCCC--CcEEEccCCccccccCcc---Cc--CCCCCCEEeCCCcccccccchhhh-hcccccceeccccccccCC
Q 038552 296 PSSLGNLTK--LVELPLSYNNLQGNIPSS---LG--NCQILRMFNASRNKLTGALPHQLL-SITTLTLSLDLSNNLLNGS 367 (659)
Q Consensus 296 ~~~~~~l~~--L~~L~l~~n~l~~~~~~~---~~--~~~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~~L~l~~n~l~~~ 367 (659)
|..+..++. |+.|++++|.+.+.+|.. +. .+++|+.|++++|.++ .+|..++ .++.++ .|++++|.+. .
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~-~L~Ls~N~L~-~ 711 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPIS-TIILSNNLMT-S 711 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCS-EEECCSCCCS-C
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCC-EEECCCCcCC-c
Confidence 888877654 999999999999866532 22 3458999999999999 6777765 788888 9999999998 5
Q ss_pred Ccccccc--------CCCCceeecCCCcccccCCcccc--CCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCC----
Q 038552 368 LPLQVGN--------LKNLVKLDISGNQFSGVIPVTLS--ACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSS---- 433 (659)
Q Consensus 368 ~~~~l~~--------l~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---- 433 (659)
+|..+.. +++|++|+|++|+++ .+|..+. .+++|+.|+|++|.+.+ +|..+..+++|+.|++++
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence 6654433 349999999999999 6788887 99999999999999997 788999999999999977
Q ss_pred --CcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCc
Q 038552 434 --NNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLC 485 (659)
Q Consensus 434 --n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc 485 (659)
|.+.+.+|..+..+++|+.|++++|++ +.+|.. .+++++.+++++|+...
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 788999999999999999999999999 788875 45789999999998754
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-44 Score=387.11 Aligned_cols=432 Identities=20% Similarity=0.192 Sum_probs=359.1
Q ss_pred cEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccCc
Q 038552 34 QTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFN 113 (659)
Q Consensus 34 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 113 (659)
++|++++|.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 58999999999 6787665 89999999999998888889999999999999999999888999999999999999999
Q ss_pred cccccChHHHhcCCCCCcEEEccCCcCCc-ccChhccCCCCCCEEEccCCCCccccccccCCCCCC--CEEECCCCCC--
Q 038552 114 RFSGSLPLDIAVNLPNLKALAIGGNNFFG-SIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNL--SWLNLEQNNL-- 188 (659)
Q Consensus 114 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l-- 188 (659)
.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| +.|++++|.+
T Consensus 80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 998 78876 69999999999999987 478899999999999999999986 356777788 9999999988
Q ss_pred CCCCCCCccc--------------------cccccCCCCCcEEEccCCc-------cccccChhHHhccccCCEEEcccC
Q 038552 189 GMGTANDLDF--------------------VTFLTNCSSLKVISLYANQ-------FGGELPHSIANLSSTMTDFRIGAN 241 (659)
Q Consensus 189 ~~~~~~~~~~--------------------~~~l~~~~~L~~L~l~~n~-------~~~~~~~~~~~~~~~L~~L~l~~~ 241 (659)
.+..+..+.. ...+..+++|+.|++++|. +.+.+| .+..+. +++.|++++|
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~-~L~~L~l~~~ 230 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNP-KLSNLTLNNI 230 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCT-TCCEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcccc-chhhcccccc
Confidence 4322221111 1134457788888888876 554444 455554 7888888888
Q ss_pred cccccCCcccc---cCCCcCeeecccccCCCCCCccc-----cCCCCCcEEEccCCCCCCCCC-ccccCC---CCCcEEE
Q 038552 242 QISGTIPPGIR---NLVNLIALTMEINKLHGTIPDTI-----GELKNLQQLSLYNNSLQGSIP-SSLGNL---TKLVELP 309 (659)
Q Consensus 242 ~~~~~~~~~l~---~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~L~ 309 (659)
.+++..+..+. ..++|++|++++|.+.+.+|..+ +.+++|+.+++++|.+ .+| ..+..+ ++|+.|+
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence 77754322221 24689999999999998888888 8899999999999998 445 444443 6799999
Q ss_pred ccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccC--CCccccccCCCCceeecCCCc
Q 038552 310 LSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNG--SLPLQVGNLKNLVKLDISGNQ 387 (659)
Q Consensus 310 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~ 387 (659)
+++|.+.... .+..+++|++|++++|.+++.+|..+..++.++ .|++++|.+.+ .+|..+..+++|++|+|++|.
T Consensus 309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELE-TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC-EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCC-EEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 9999886432 136889999999999999998999999999998 99999999987 566789999999999999999
Q ss_pred ccccCCc-cccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552 388 FSGVIPV-TLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK 466 (659)
Q Consensus 388 l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~ 466 (659)
+++.+|. .+..+++|++|++++|.+++..|..+. ++|+.|++++|.++ .+|..+..+++|+.|++++|+++. +|.
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~ 461 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPD 461 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCT
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCH
Confidence 9985554 588999999999999999988877664 79999999999998 677777799999999999999995 554
Q ss_pred --CCccCCcccccccCCCCCcc
Q 038552 467 --KGVFSNKTKISLQGNVKLCG 486 (659)
Q Consensus 467 --~~~~~~~~~~~~~~n~~lc~ 486 (659)
...+++++.+++++|++.|.
T Consensus 462 ~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 462 GIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TTTTTCTTCCEEECCSSCBCCC
T ss_pred HHhccCCcccEEECcCCCCccc
Confidence 35577899999999999884
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.7e-43 Score=379.46 Aligned_cols=437 Identities=18% Similarity=0.208 Sum_probs=307.7
Q ss_pred CCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEE
Q 038552 6 YSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLN 85 (659)
Q Consensus 6 ~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 85 (659)
|...+++++++|.++ .+|..+. ++|++|++++|.+++..+.+|.++++|++|++++|.+.+..|..|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 445578999999988 4777664 7899999999999877778899999999999999999888888899999999999
Q ss_pred eecCcCCccCcccccCCCCCCEEeccCccccc-cChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCC--CEEEccCC
Q 038552 86 VGENRFSGMFPRSICNISSLEWIYLPFNRFSG-SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNL--EILDLTSN 162 (659)
Q Consensus 86 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n 162 (659)
+++|.++ .+|.. .+++|++|++++|.+++ .+|..+. .+++|++|++++|.+++. .+..+++| ++|++++|
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~-~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFG-NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGG-GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhc-ccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 9999988 56655 78999999999998874 2345555 789999999999988753 35555566 99999999
Q ss_pred CC--ccccccccCCCC--CCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCC----------------------
Q 038552 163 QL--KGKVSIDFSSLK--NLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYAN---------------------- 216 (659)
Q Consensus 163 ~l--~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n---------------------- 216 (659)
.+ ++..+..+..+. .+ .++++.|.+.+. .....+..+++|+.+++++|
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVL-HLVFHPNSLFSV-----QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEE-EEEECSSSCCCC-----CCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred cccccccCcccccccCcceE-EEEecCccchhh-----hhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 88 666666665543 12 334444544321 11122334444555555444
Q ss_pred ------ccccccChhHHh--ccccCCEEEcccCcccccCCccc-----ccCCCcCeeecccccCCCCCC-ccccC---CC
Q 038552 217 ------QFGGELPHSIAN--LSSTMTDFRIGANQISGTIPPGI-----RNLVNLIALTMEINKLHGTIP-DTIGE---LK 279 (659)
Q Consensus 217 ------~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~~~~---~~ 279 (659)
.+.+.....+.. ...++++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+| ..+.. ..
T Consensus 254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEM 331 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTC
T ss_pred EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccC
Confidence 333221111110 01267777777777777777665 5555555556655555 333 22221 25
Q ss_pred CCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCccccc--ccchhhhhccccccee
Q 038552 280 NLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTG--ALPHQLLSITTLTLSL 357 (659)
Q Consensus 280 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~l~~~L 357 (659)
+|++|++++|.+.... ....+++|++|++++|.+++..|..+..+++|+.|++++|++++ .+|..+..++.++ .|
T Consensus 332 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~-~L 408 (562)
T 3a79_B 332 NIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE-TL 408 (562)
T ss_dssp CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC-EE
T ss_pred cceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC-EE
Confidence 6888888888775322 12577888888888888887778888888888888888888875 3345677778887 78
Q ss_pred ccccccccCCCcc-ccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcc
Q 038552 358 DLSNNLLNGSLPL-QVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436 (659)
Q Consensus 358 ~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 436 (659)
++++|.+.+.+|. .+..+++|++|+|++|++++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|.+
T Consensus 409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCC
T ss_pred ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCC
Confidence 8888888874544 477788888888888888776665544 67888888888887 5666666888888888888888
Q ss_pred cccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552 437 SGLIPEFLKNLSFMEFLDLSYNHFEGEVPK 466 (659)
Q Consensus 437 ~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~ 466 (659)
++..+..+..+++|+.|++++|++.|.++.
T Consensus 486 ~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 486 KSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 854333477888888888888888877764
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.9e-41 Score=374.81 Aligned_cols=468 Identities=21% Similarity=0.190 Sum_probs=358.3
Q ss_pred CCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEee
Q 038552 8 NLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVG 87 (659)
Q Consensus 8 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 87 (659)
++++|||++|.+++..+.+|.++++|++|+|++|.+++..+.+|.++++|++|+|++|.+.+..+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 78999999999997777889999999999999999998778889999999999999999977777889999999999999
Q ss_pred cCcCCccCcccccCCCCCCEEeccCccccc-cChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCC----CEEEccCC
Q 038552 88 ENRFSGMFPRSICNISSLEWIYLPFNRFSG-SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNL----EILDLTSN 162 (659)
Q Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~l~~n 162 (659)
+|++++..+..|+++++|++|++++|.+++ .+|..+. .+++|++|++++|++++..+..+..++++ ..++++.|
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhc-cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 999997777789999999999999998874 3455554 78999999999999988877777655443 46777877
Q ss_pred CCccccccccCCCCCCCEEECCCCCCC-------------------------C------CCCCC----------------
Q 038552 163 QLKGKVSIDFSSLKNLSWLNLEQNNLG-------------------------M------GTAND---------------- 195 (659)
Q Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~l~-------------------------~------~~~~~---------------- 195 (659)
.+....+..+.. ..++.+++.+|... . .....
T Consensus 212 ~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred cccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 776544332222 22233333332111 0 00000
Q ss_pred -----ccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCC
Q 038552 196 -----LDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT 270 (659)
Q Consensus 196 -----~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 270 (659)
......+..+.+++.+.+..+.+....+ +.. ...++.+++.+|.+.+..+ ..+..|+.+++..|.....
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~-~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSY-NFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGS-CCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB
T ss_pred hcccccchhhhhhhhcccccccccccccccccc--ccc-chhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC
Confidence 0011223445677788887776653222 222 2378999999998875433 3456788888888877643
Q ss_pred CCccccCCCCCcEEEccCCCCCC--CCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccc-hhh
Q 038552 271 IPDTIGELKNLQQLSLYNNSLQG--SIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALP-HQL 347 (659)
Q Consensus 271 ~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~ 347 (659)
. ....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+.... .+..+..+++|+.+++..+......+ ..+
T Consensus 365 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 365 F--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp C--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred c--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccc
Confidence 3 34578899999999998763 355566778899999999888764 55678888999999998887765554 345
Q ss_pred hhcccccceeccccccccCCCccccccCCCCceeecCCCcc-cccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCC
Q 038552 348 LSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQF-SGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSI 426 (659)
Q Consensus 348 ~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 426 (659)
..+..+. .+++++|.+.+..+..+..++.|++|+|++|.+ .+..|..|..+++|++|+|++|++.+..|..|.++++|
T Consensus 442 ~~l~~l~-~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 442 LSLRNLI-YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp TTCTTCC-EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccccccc-cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 6677777 899999999888888888999999999999875 44577888999999999999999998888889999999
Q ss_pred CEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC-Cc-cCCcccccccCCCCCccc
Q 038552 427 KEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GV-FSNKTKISLQGNVKLCGG 487 (659)
Q Consensus 427 ~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~-~~-~~~~~~~~~~~n~~lc~~ 487 (659)
+.|+|++|++++..|..+..+++|+.|++++|++++..|.. .. ..+++.+++++||+.|..
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999999999888888899999999999999999887754 22 357888999999999853
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.2e-40 Score=366.35 Aligned_cols=453 Identities=21% Similarity=0.203 Sum_probs=348.1
Q ss_pred EEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCc
Q 038552 11 ELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENR 90 (659)
Q Consensus 11 ~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 90 (659)
+.+-++..++ .+|..+. .++++|+|++|.+++..+.+|.++++|++|+|++|.+.+..+.+|.++++|++|+|++|+
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 4455555666 5676653 479999999999998778899999999999999999988778889999999999999999
Q ss_pred CCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcc-cChhccCCCCCCEEEccCCCCccccc
Q 038552 91 FSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGS-IPNSLSNASNLEILDLTSNQLKGKVS 169 (659)
Q Consensus 91 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~ 169 (659)
+++..+..|.++++|++|++++|.++ .+|...+..+++|++|++++|.+++. .|..++.+++|++|++++|.+++..+
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 99777788999999999999999998 67665555899999999999999764 67888999999999999999998888
Q ss_pred cccCCCCCC----CEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccCh-hHHhc---------------
Q 038552 170 IDFSSLKNL----SWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPH-SIANL--------------- 229 (659)
Q Consensus 170 ~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~~~~~--------------- 229 (659)
..|..+.++ ..++++.|.+...... ......+..+++..|......+. .+..+
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-------~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPG-------AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTT-------TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred ccccchhhhhhhhhhhhcccCcccccCcc-------cccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 877665544 4688888887653321 11222334444444322211110 01100
Q ss_pred -----------------------------------------cccCCEEEcccCcccccCCcccccCCCcCeeecccccCC
Q 038552 230 -----------------------------------------SSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLH 268 (659)
Q Consensus 230 -----------------------------------------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 268 (659)
...++.+.+..+.+... ..+.....++.|++.+|.+.
T Consensus 264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~ 341 (635)
T 4g8a_A 264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFG 341 (635)
T ss_dssp SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEES
T ss_pred ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhccccccc
Confidence 01233333333333321 12344556777777777665
Q ss_pred CCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCcccc--ccCccCcCCCCCCEEeCCCcccccccchh
Q 038552 269 GTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQG--NIPSSLGNCQILRMFNASRNKLTGALPHQ 346 (659)
Q Consensus 269 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 346 (659)
+..+. .+..|+.+++.+|..... .....+++|+.|++++|.+.. ..+..+..+.+|+.+++..+... ..+..
T Consensus 342 ~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~ 415 (635)
T 4g8a_A 342 QFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSN 415 (635)
T ss_dssp SCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSC
T ss_pred CcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccccc
Confidence 44332 456777788877776533 234578999999999998763 45666778899999999999887 45566
Q ss_pred hhhcccccceeccccccccCCCc-cccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCC-CCCcccccCCC
Q 038552 347 LLSITTLTLSLDLSNNLLNGSLP-LQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFH-GIIPLSLSSLK 424 (659)
Q Consensus 347 ~~~~~~l~~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~ 424 (659)
+..++.+. .++++++......+ ..+..+++++.+++++|.+.+..+..+..+++|++|++++|.+. +..|..|..++
T Consensus 416 ~~~l~~L~-~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 416 FLGLEQLE-HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp CTTCTTCC-EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cccccccc-chhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc
Confidence 77888888 89999888765544 46788999999999999999999999999999999999999854 45788899999
Q ss_pred CCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC-CccCCcccccccCCCC
Q 038552 425 SIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GVFSNKTKISLQGNVK 483 (659)
Q Consensus 425 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~ 483 (659)
+|+.|++++|.+++..|..|..+++|+.|++++|++++..|.. ..+++++.+++++|.-
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcC
Confidence 9999999999999999999999999999999999999876643 5567899999999954
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.6e-41 Score=363.82 Aligned_cols=433 Identities=18% Similarity=0.159 Sum_probs=334.1
Q ss_pred CCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEE
Q 038552 29 SLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWI 108 (659)
Q Consensus 29 ~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 108 (659)
.|...+++++++|.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|.+|.++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 3455689999999999 4777654 899999999999988888899999999999999999998889999999999999
Q ss_pred eccCccccccChHHHhcCCCCCcEEEccCCcCCcc-cChhccCCCCCCEEEccCCCCccccccccCCCCCC--CEEECCC
Q 038552 109 YLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGS-IPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNL--SWLNLEQ 185 (659)
Q Consensus 109 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~ 185 (659)
++++|.++ .+|.. .+++|++|++++|.+++. +|..++++++|++|++++|.+++. .+..+++| +.|++++
T Consensus 106 ~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 106 DVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp ECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred ECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 99999998 78876 699999999999999873 468899999999999999998864 35555555 9999999
Q ss_pred CCC--CCCCCCCccccccccCCC-CCcEEEccCCccccccChhHHhccccCCEEEcccCcc-----cccCCcccccC---
Q 038552 186 NNL--GMGTANDLDFVTFLTNCS-SLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQI-----SGTIPPGIRNL--- 254 (659)
Q Consensus 186 n~l--~~~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~~~~~l~~l--- 254 (659)
|.+ ++.. +..+..+. ..-.++++.|.+.+.++........+|+.+++++|.. .+. ...+..+
T Consensus 179 n~l~~~~~~------~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L 251 (562)
T 3a79_B 179 VSYHIKGGE------TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTL 251 (562)
T ss_dssp SSCCCCSSS------CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSC
T ss_pred ccccccccC------cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcc
Confidence 988 5432 23333332 1225678888877766554333334677777777631 110 1112222
Q ss_pred ------------------------CCcCeeecccccCCCCCCccc-----cCCCCCcEEEccCCCCCCCCC-ccccC---
Q 038552 255 ------------------------VNLIALTMEINKLHGTIPDTI-----GELKNLQQLSLYNNSLQGSIP-SSLGN--- 301 (659)
Q Consensus 255 ------------------------~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~~~~~--- 301 (659)
++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+| ..+..
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~ 329 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFA 329 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHH
T ss_pred eEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhc
Confidence 366666666666666666555 4555555555555554 223 11111
Q ss_pred CCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCC--CccccccCCCCc
Q 038552 302 LTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGS--LPLQVGNLKNLV 379 (659)
Q Consensus 302 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~--~~~~l~~l~~L~ 379 (659)
.++|++|++++|.+.... ....+++|++|++++|.+++..|..+..++.++ .|++++|.+.+. +|..+..+++|+
T Consensus 330 ~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~~~l~~L~ 406 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ-TLILQRNGLKNFFKVALMTKNMSSLE 406 (562)
T ss_dssp TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCC-EEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred cCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCC-EEECCCCCcCCcccchhhhcCCCCCC
Confidence 256888888888875322 126889999999999999998999999999998 999999999874 356789999999
Q ss_pred eeecCCCcccccCC-ccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCC
Q 038552 380 KLDISGNQFSGVIP-VTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYN 458 (659)
Q Consensus 380 ~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n 458 (659)
+|+|++|.+++.+| ..+..+++|++|++++|.+++..|..+. ++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus 407 ~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp EEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSS
T ss_pred EEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCC
Confidence 99999999998455 4588999999999999999987776554 79999999999998 56766679999999999999
Q ss_pred cCcccCCC-CCccCCcccccccCCCCCcc
Q 038552 459 HFEGEVPK-KGVFSNKTKISLQGNVKLCG 486 (659)
Q Consensus 459 ~l~~~~p~-~~~~~~~~~~~~~~n~~lc~ 486 (659)
+++...+. ...++.++.+++++|++.|.
T Consensus 484 ~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 484 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 99954333 45678899999999999984
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-39 Score=343.96 Aligned_cols=393 Identities=18% Similarity=0.205 Sum_probs=269.9
Q ss_pred CEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCccc-ccccCCCCCCCEEEeec
Q 038552 10 IELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKI-PTTLGLLRNLVDLNVGE 88 (659)
Q Consensus 10 ~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~ 88 (659)
+.++.+++.++ .+|. +. ++|++|++++|.+.+..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 46777888777 5565 32 68999999999999888889999999999999999886555 56789999999999999
Q ss_pred CcCCccCcccccCCCCCCEEeccCccccccChHH-HhcCCCCCcEEEccCCcCCcccChh-ccCCCCCCEEEccCCCCcc
Q 038552 89 NRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLD-IAVNLPNLKALAIGGNNFFGSIPNS-LSNASNLEILDLTSNQLKG 166 (659)
Q Consensus 89 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~ 166 (659)
|.+++..|..++++++|++|++++|.+++.++.. ....+++|++|++++|.+++..|.. +.++++|++|++++|.+++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 9998888889999999999999999988655543 2337889999999999988777765 7888999999999998888
Q ss_pred ccccccCCC--CCCCEEECCCCCCCCCCCCCcc--ccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCc
Q 038552 167 KVSIDFSSL--KNLSWLNLEQNNLGMGTANDLD--FVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQ 242 (659)
Q Consensus 167 ~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 242 (659)
..+..+..+ .+|+.|++++|.+......... ....+..+++|++|++++|.+.+..|..+....
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~------------ 236 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI------------ 236 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT------------
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc------------
Confidence 777777665 6778888888877654322111 111233445666666666666655555444321
Q ss_pred ccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCcccc--CCCCCcEEEccCCccccccC
Q 038552 243 ISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG--NLTKLVELPLSYNNLQGNIP 320 (659)
Q Consensus 243 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~ 320 (659)
..++|+.|++++|...+... ..+.+.+..+..+. ..++|++|++++|.+.+..|
T Consensus 237 ----------~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 237 ----------AGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp ----------TTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred ----------cccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccch
Confidence 11333444444443322100 01111111111111 12445555555555555455
Q ss_pred ccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCC
Q 038552 321 SSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACV 400 (659)
Q Consensus 321 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 400 (659)
..+..+++|+.|++++|.+. +..|..+..+++|++|+|++|.+++..+..+..++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~-------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEIN-------------------------KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCC-------------------------EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred hhcccCCCCCEEECCCCccc-------------------------ccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 55555555555555444443 34445566677777777777777777777777788
Q ss_pred CCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC
Q 038552 401 SLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK 467 (659)
Q Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~ 467 (659)
+|++|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.+|..
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 8888888888887777777888888888888888888766667778888888888888888888754
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.9e-40 Score=346.54 Aligned_cols=383 Identities=19% Similarity=0.184 Sum_probs=241.5
Q ss_pred cEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccC-cccccCCCCCCEEeccC
Q 038552 34 QTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMF-PRSICNISSLEWIYLPF 112 (659)
Q Consensus 34 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~ 112 (659)
+.++.+++.++ .+|. + .++|++|++++|.+.+..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 34566666665 4454 2 256777777777776666666777777777777777665333 44566666666666666
Q ss_pred ccccccChHHHhcCCCCCcEEEccCCcCCcccChh--ccCCCCCCEEEccCCCCccccccc-cCCCCCCCEEECCCCCCC
Q 038552 113 NRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNS--LSNASNLEILDLTSNQLKGKVSID-FSSLKNLSWLNLEQNNLG 189 (659)
Q Consensus 113 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~ 189 (659)
|.+++..|..+. .+++|++|++++|.+++.++.. +.++++|++|++++|.+++..|.. +..+++|++|++++|.++
T Consensus 89 n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 89 NQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 666643344443 5666666666666665433333 555666666666666655554443 455555555555555554
Q ss_pred CCCCCCccccccccCCCCCcEEEccCCccccccChhHHhcc-ccCCEEEcccCcccccCCcc--------cccCCCcCee
Q 038552 190 MGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLS-STMTDFRIGANQISGTIPPG--------IRNLVNLIAL 260 (659)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L 260 (659)
+ ..+..+..+. ..++.+++++|.+.+..+.. +..+++|+.|
T Consensus 168 ~------------------------------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L 217 (455)
T 3v47_A 168 S------------------------------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217 (455)
T ss_dssp C------------------------------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEE
T ss_pred c------------------------------cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeE
Confidence 3 2222222210 13333333333333221111 1233444444
Q ss_pred ecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccc
Q 038552 261 TMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT 340 (659)
Q Consensus 261 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 340 (659)
++++|.+.+..|..+... ...++|+.|++++|...+.... ... +.
T Consensus 218 ~Ls~n~l~~~~~~~~~~~---------------------~~~~~L~~L~l~~~~~~~~~~~-~~~-------------~~ 262 (455)
T 3v47_A 218 DLSGNGFKESMAKRFFDA---------------------IAGTKIQSLILSNSYNMGSSFG-HTN-------------FK 262 (455)
T ss_dssp ECTTSCCCHHHHHHHHHH---------------------TTTCCEEEEECTTCTTTSCCTT-CCS-------------SC
T ss_pred ecCCCcccccchhhhhcc---------------------ccccceeeEeeccccccccccc-hhh-------------hc
Confidence 554444444433333221 0114555555555544322110 000 11
Q ss_pred cccchhhh--hcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcc
Q 038552 341 GALPHQLL--SITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPL 418 (659)
Q Consensus 341 ~~~~~~~~--~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 418 (659)
...+..+. ..+.++ .|++++|.+.+..|..+..+++|++|+|++|++++..|..|.++++|++|++++|.+.+..|.
T Consensus 263 ~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 263 DPDNFTFKGLEASGVK-TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp CCCTTTTGGGTTSCCC-EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred cCcccccccccccCce-EEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence 01111111 123454 677778887777788899999999999999999999999999999999999999999988899
Q ss_pred cccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC-CccCCcccccccCCCCCccc
Q 038552 419 SLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GVFSNKTKISLQGNVKLCGG 487 (659)
Q Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~ 487 (659)
.+..+++|+.|++++|.+++..|..+..+++|+.|++++|++.+..+.. ..+++++.+++++|+..|..
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 9999999999999999999998999999999999999999999755543 56788999999999998853
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.7e-39 Score=334.13 Aligned_cols=404 Identities=23% Similarity=0.278 Sum_probs=243.9
Q ss_pred CCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCC-------------cEEEccCCccCccc
Q 038552 5 RYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSAL-------------KVFYIIGNSLGGKI 71 (659)
Q Consensus 5 ~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L-------------~~L~l~~n~l~~~~ 71 (659)
+.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++++++| ++|++++|.+.+ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 468899999999999 6999999999999999999999999999999998875 889999888854 4
Q ss_pred ccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCC
Q 038552 72 PTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNA 151 (659)
Q Consensus 72 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 151 (659)
|. -.++|++|++++|.+++ +|.. +++|++|++++|.++ .+|. ..++|++|++++|.+++ +| .++++
T Consensus 87 p~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 87 PE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp CS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred CC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 43 23688999999998886 6643 478899999998887 4442 23688999999998886 66 58889
Q ss_pred CCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccc
Q 038552 152 SNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSS 231 (659)
Q Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 231 (659)
++|++|++++|.+++ +|.. ..+|++|++++|.+++. + .+..+++|++|++++|.+.+ +|.. ..
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-------~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~ 215 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-------P-ELQNLPFLTAIYADNNSLKK-LPDL----PL 215 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-------C-CCTTCTTCCEEECCSSCCSS-CCCC----CT
T ss_pred CCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-------c-cccCCCCCCEEECCCCcCCc-CCCC----cC
Confidence 999999999998875 4433 35889999998888642 2 46788889999999888874 4432 23
Q ss_pred cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552 232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS 311 (659)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 311 (659)
+|+.|++++|.++ .+| .++.+++|++|++++|.+.+ +|. .+++|++|++++|.+.+ +|.. +++|++|+++
T Consensus 216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls 285 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVS 285 (454)
T ss_dssp TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECc
Confidence 7888888888887 566 47788888888888888875 343 24788888888888875 4442 3678888888
Q ss_pred CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhc-ccccceeccccccccCCCccccccCCCCceeecCCCcccc
Q 038552 312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSI-TTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSG 390 (659)
Q Consensus 312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 390 (659)
+|.+++ +|.. .++|+.|++++|.+++ ++ .+ +.++ .|++++|++.+ +|.. +++|++|++++|++++
T Consensus 286 ~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~-~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~ 351 (454)
T 1jl5_A 286 ENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLE-ELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE 351 (454)
T ss_dssp SSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCC-EEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred CCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCC-EEECCCCcccc-cccc---CCcCCEEECCCCcccc
Confidence 888775 2211 1578888888888774 22 22 3455 77777777775 4433 4677778888777773
Q ss_pred cCCccccCCCCCCeEECCCCCCCC--CCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcc--cCCC
Q 038552 391 VIPVTLSACVSLEYLNISRNFFHG--IIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEG--EVPK 466 (659)
Q Consensus 391 ~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~--~~p~ 466 (659)
+|. .+++|++|++++|.+.+ .+|..+.. ++.|.+.+.+|.. +++|+.|++++|++++ .+|
T Consensus 352 -lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP- 415 (454)
T 1jl5_A 352 -VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP- 415 (454)
T ss_dssp -CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC---------------------------------
T ss_pred -ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccch-
Confidence 444 35777788888877776 45544332 2335555555543 4788999999999987 555
Q ss_pred CCccCCcccccccCCCCCc
Q 038552 467 KGVFSNKTKISLQGNVKLC 485 (659)
Q Consensus 467 ~~~~~~~~~~~~~~n~~lc 485 (659)
..+..+.+.+|...|
T Consensus 416 ----~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 416 ----ESVEDLRMNSERVVD 430 (454)
T ss_dssp -------------------
T ss_pred ----hhHhheeCcCcccCC
Confidence 335566666665444
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.1e-37 Score=326.10 Aligned_cols=385 Identities=25% Similarity=0.305 Sum_probs=233.6
Q ss_pred CCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCC-------------CEEEeecCcCCccC
Q 038552 29 SLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNL-------------VDLNVGENRFSGMF 95 (659)
Q Consensus 29 ~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------~~L~l~~n~l~~~~ 95 (659)
...+|++|++++|.+ +.+|++++++++|++|++++|.+.+.+|..++++++| ++|++++|.+++ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 357899999999999 6999999999999999999999989999999998875 888888888874 4
Q ss_pred cccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCC
Q 038552 96 PRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSL 175 (659)
Q Consensus 96 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (659)
|.. .++|++|++++|.+++ +|. ..++|+.|++++|.+++. +.. .++|++|++++|.+++ +| +|+.+
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred CCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 432 3678888888888874 664 347888888888888742 221 2678888888888876 55 58888
Q ss_pred CCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCC
Q 038552 176 KNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLV 255 (659)
Q Consensus 176 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 255 (659)
++|++|++++|++++.. .. ..+|++|++++|.+.+ +| .+..+. +|+.|++++|.+++ +|.. .+
T Consensus 153 ~~L~~L~l~~N~l~~lp-------~~---~~~L~~L~L~~n~l~~-l~-~~~~l~-~L~~L~l~~N~l~~-l~~~---~~ 215 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLP-------DL---PPSLEFIAAGNNQLEE-LP-ELQNLP-FLTAIYADNNSLKK-LPDL---PL 215 (454)
T ss_dssp TTCCEEECCSSCCSCCC-------CC---CTTCCEEECCSSCCSS-CC-CCTTCT-TCCEEECCSSCCSS-CCCC---CT
T ss_pred CCCCEEECCCCcCcccC-------CC---cccccEEECcCCcCCc-Cc-cccCCC-CCCEEECCCCcCCc-CCCC---cC
Confidence 88888888888776421 11 2478888888888775 55 355554 78888888887775 3432 24
Q ss_pred CcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCC
Q 038552 256 NLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNAS 335 (659)
Q Consensus 256 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 335 (659)
+|+.|++++|.+. .+| .++.+++|++|++++|++.+ +|. .+++|++|++++|.+.+ +|.. .++|+.|+++
T Consensus 216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls 285 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVS 285 (454)
T ss_dssp TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECc
Confidence 7778888888777 455 37778888888888887774 443 23678888888887774 4443 3677888888
Q ss_pred CcccccccchhhhhcccccceeccccccccCCCccccccC-CCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCC
Q 038552 336 RNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNL-KNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG 414 (659)
Q Consensus 336 ~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 414 (659)
+|.+++ +|.. .+.++ .|++++|.+.+. ..+ ++|++|++++|++++ +|.. +++|++|++++|.+++
T Consensus 286 ~N~l~~-l~~~---~~~L~-~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~ 351 (454)
T 1jl5_A 286 ENIFSG-LSEL---PPNLY-YLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE 351 (454)
T ss_dssp SSCCSE-ESCC---CTTCC-EEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred CCccCc-ccCc---CCcCC-EEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc
Confidence 887775 2211 13454 677777777641 122 477788888887775 4433 4677788888887773
Q ss_pred CCcccccCCCCCCEEECCCCcccc--cchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCC
Q 038552 415 IIPLSLSSLKSIKEFNVSSNNLSG--LIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKL 484 (659)
Q Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~l 484 (659)
+|. .+++|+.|++++|.+++ .+|..+.. ++.|.+.+.+|. .+.+++.+++++|+..
T Consensus 352 -lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~--~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 352 -VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPE--LPQNLKQLHVETNPLR 409 (454)
T ss_dssp -CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC-------------------------
T ss_pred -ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhccccccccc--ccCcCCEEECCCCcCC
Confidence 444 36777888888887776 44544332 234666666665 2578899999998754
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.7e-37 Score=324.45 Aligned_cols=348 Identities=22% Similarity=0.233 Sum_probs=272.1
Q ss_pred CEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCC
Q 038552 106 EWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQ 185 (659)
Q Consensus 106 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (659)
+.++.+++.++ .+|..+ .++++.|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 56777777777 777654 35788999999988887778888889999999998888888788888888888888888
Q ss_pred CCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccc
Q 038552 186 NNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEIN 265 (659)
Q Consensus 186 n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 265 (659)
|.++... ...+..+++|++|++++|.+. +..+..+..+++|++|++++|
T Consensus 90 n~l~~~~------~~~~~~l~~L~~L~Ls~n~i~-------------------------~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 90 NRLKLIP------LGVFTGLSNLTKLDISENKIV-------------------------ILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp SCCCSCC------TTSSTTCTTCCEEECTTSCCC-------------------------EECTTTTTTCTTCCEEEECCT
T ss_pred CcCCccC------cccccCCCCCCEEECCCCccc-------------------------cCChhHccccccCCEEECCCC
Confidence 8876422 123455666666666666554 334455666777777777777
Q ss_pred cCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccch
Q 038552 266 KLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPH 345 (659)
Q Consensus 266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 345 (659)
.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.+|.
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 77776677777777888888888877766666677788888888888887776666777888888888888777777777
Q ss_pred hhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCC
Q 038552 346 QLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKS 425 (659)
Q Consensus 346 ~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 425 (659)
.......++ .|++++|.+.+..+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|.+.+..|..|.++++
T Consensus 219 ~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 219 NCLYGLNLT-SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp TTTTTCCCS-EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred ccccCcccc-EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 776666777 7888888888655567888999999999999998888888899999999999999999888888999999
Q ss_pred CCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCcccCC
Q 038552 426 IKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGID 489 (659)
Q Consensus 426 L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~ 489 (659)
|+.|++++|.+++..+..|..+++|+.|++++|++.+.++..+.+.......+.++...|..+.
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 9999999999988877888888999999999999988776544444444566677777886543
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.5e-36 Score=316.21 Aligned_cols=360 Identities=18% Similarity=0.211 Sum_probs=224.5
Q ss_pred CchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCC
Q 038552 23 IPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNI 102 (659)
Q Consensus 23 ~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 102 (659)
.+..++++++|++|++++|.+++. | .+..+++|++|++++|.+.+. | ++.+++|++|++++|.+++. + ++++
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l 105 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPL 105 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCC
Confidence 344455566666666666666642 3 466666666666666666442 2 56666666666666666543 2 5666
Q ss_pred CCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEE
Q 038552 103 SSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLN 182 (659)
Q Consensus 103 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (659)
++|++|++++|.++ .+| +. .+++|++|++++|.+++. + ++.+++|++|++++|...+.+ .++.+++|+.|+
T Consensus 106 ~~L~~L~L~~N~l~-~l~--~~-~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 106 TKLTYLNCDTNKLT-KLD--VS-QNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp TTCCEEECCSSCCS-CCC--CT-TCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CcCCEEECCCCcCC-eec--CC-CCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 66666666666665 343 22 566666666666666542 2 556666666666666433333 355666666666
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeec
Q 038552 183 LEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTM 262 (659)
Q Consensus 183 l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 262 (659)
+++|++++. + +..+++|+.|++++|.+++. + +..+. +|+.|++++|.+++ +| ++.+++|+.|++
T Consensus 177 ls~n~l~~l-------~--l~~l~~L~~L~l~~N~l~~~-~--l~~l~-~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l 240 (457)
T 3bz5_A 177 CSFNKITEL-------D--VSQNKLLNRLNCDTNNITKL-D--LNQNI-QLTFLDCSSNKLTE-ID--VTPLTQLTYFDC 240 (457)
T ss_dssp CCSSCCCCC-------C--CTTCTTCCEEECCSSCCSCC-C--CTTCT-TCSEEECCSSCCSC-CC--CTTCTTCSEEEC
T ss_pred CCCCcccee-------c--cccCCCCCEEECcCCcCCee-c--cccCC-CCCEEECcCCcccc-cC--ccccCCCCEEEe
Confidence 666665531 1 44555666666666655532 1 22222 45555555555554 33 455566666666
Q ss_pred ccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccc
Q 038552 263 EINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGA 342 (659)
Q Consensus 263 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 342 (659)
++|.+++.. ++.+++|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.
T Consensus 241 ~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 241 SVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp CSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE
T ss_pred eCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccce
Confidence 666665532 334556666665543 34556677777666665 46778888888888877766
Q ss_pred cchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccC
Q 038552 343 LPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSS 422 (659)
Q Consensus 343 ~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 422 (659)
+|.. ...+. .+++ +.+++|++|++++|++++. .+..+++|++|++++|++.+
T Consensus 302 l~~~---~~~L~-~L~l-------------~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~-------- 353 (457)
T 3bz5_A 302 LDCQ---AAGIT-ELDL-------------SQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD-------- 353 (457)
T ss_dssp EECT---TCCCS-CCCC-------------TTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------
T ss_pred eccC---CCcce-Eech-------------hhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------
Confidence 6642 23333 3443 3447899999999999874 38889999999999999885
Q ss_pred CCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC
Q 038552 423 LKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK 467 (659)
Q Consensus 423 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~ 467 (659)
++.|..|++++|.+.|. ..+..|..+++++|.++|.+|..
T Consensus 354 l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 354 FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 24666778899988876 34556788899999999999864
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-35 Score=313.58 Aligned_cols=346 Identities=27% Similarity=0.370 Sum_probs=206.4
Q ss_pred CCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEe
Q 038552 30 LLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIY 109 (659)
Q Consensus 30 ~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 109 (659)
+.+++.|+++++.+. .+| .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+++..+ ++++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 345666666666655 233 25566666666666666644332 6666666666666666654332 66666666666
Q ss_pred ccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCC
Q 038552 110 LPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLG 189 (659)
Q Consensus 110 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 189 (659)
+++|.++ .++. + ..+++|++|++++|.+.+. + .+..+++|++|+++ +.+.+.. .+..+++|+.|++++|.++
T Consensus 119 L~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 119 LFNNQIT-DIDP-L-KNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp CCSSCCC-CCGG-G-TTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred CCCCCCC-CChH-H-cCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 6666665 3333 2 2566666666666665532 2 35666666666664 2333222 2556666666666666554
Q ss_pred CCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCC
Q 038552 190 MGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHG 269 (659)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 269 (659)
.. ..+..+++|++|++++|.+.+..| ++.+++|+.|++++|.+.+
T Consensus 191 ~~--------~~l~~l~~L~~L~l~~n~l~~~~~---------------------------~~~l~~L~~L~l~~n~l~~ 235 (466)
T 1o6v_A 191 DI--------SVLAKLTNLESLIATNNQISDITP---------------------------LGILTNLDELSLNGNQLKD 235 (466)
T ss_dssp CC--------GGGGGCTTCSEEECCSSCCCCCGG---------------------------GGGCTTCCEEECCSSCCCC
T ss_pred CC--------hhhccCCCCCEEEecCCccccccc---------------------------ccccCCCCEEECCCCCccc
Confidence 31 224445555555555555443222 3344555555555555543
Q ss_pred CCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhh
Q 038552 270 TIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLS 349 (659)
Q Consensus 270 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 349 (659)
. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..
T Consensus 236 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~ 307 (466)
T 1o6v_A 236 I--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 307 (466)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG
T ss_pred c--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC
Confidence 2 235555666666666666654333 5556666666666666654322 5566666666666666654332 555
Q ss_pred cccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEE
Q 038552 350 ITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEF 429 (659)
Q Consensus 350 ~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 429 (659)
++.++ .|++++|.+.+..| +..+++|++|++++|.+++. ..+..+++|++|++++|++.+..| +..+++|+.|
T Consensus 308 l~~L~-~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 308 LKNLT-YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp CTTCS-EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred CCCCC-EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence 66666 66777776665544 66778888888888888764 467788888888888888887766 7788888888
Q ss_pred ECCCCccccc
Q 038552 430 NVSSNNLSGL 439 (659)
Q Consensus 430 ~l~~n~l~~~ 439 (659)
++++|.+++.
T Consensus 381 ~l~~n~~~~~ 390 (466)
T 1o6v_A 381 GLNDQAWTNA 390 (466)
T ss_dssp ECCCEEEECC
T ss_pred eccCCcccCC
Confidence 8888888763
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.7e-36 Score=317.50 Aligned_cols=358 Identities=18% Similarity=0.191 Sum_probs=300.9
Q ss_pred CCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCC
Q 038552 3 LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLV 82 (659)
Q Consensus 3 ~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 82 (659)
++++++|++|++++|.+++. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+.+. + ++++++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 55789999999999999964 5 799999999999999999964 4 89999999999999999764 3 89999999
Q ss_pred EEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCC
Q 038552 83 DLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSN 162 (659)
Q Consensus 83 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 162 (659)
+|++++|.+++ ++ ++.+++|++|++++|.+++ ++ +. .+++|++|++++|...+.+ .+..+++|++|++++|
T Consensus 110 ~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 110 YLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VS-HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp EEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CT-TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred EEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cc-cCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 99999999986 44 8999999999999999984 54 33 7899999999999766555 4789999999999999
Q ss_pred CCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCc
Q 038552 163 QLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQ 242 (659)
Q Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 242 (659)
.+++. + ++.+++|+.|++++|.+++. .+..+++|++|++++|.+++ +| +..+. +|+.|++++|.
T Consensus 181 ~l~~l-~--l~~l~~L~~L~l~~N~l~~~---------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~-~L~~L~l~~N~ 244 (457)
T 3bz5_A 181 KITEL-D--VSQNKLLNRLNCDTNNITKL---------DLNQNIQLTFLDCSSNKLTE-ID--VTPLT-QLTYFDCSVNP 244 (457)
T ss_dssp CCCCC-C--CTTCTTCCEEECCSSCCSCC---------CCTTCTTCSEEECCSSCCSC-CC--CTTCT-TCSEEECCSSC
T ss_pred cccee-c--cccCCCCCEEECcCCcCCee---------ccccCCCCCEEECcCCcccc-cC--ccccC-CCCEEEeeCCc
Confidence 99874 3 88999999999999999763 36788999999999999997 56 55554 89999999999
Q ss_pred ccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCcc
Q 038552 243 ISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSS 322 (659)
Q Consensus 243 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 322 (659)
+++.. ++.+++|+.|+++.| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|.
T Consensus 245 l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~- 304 (457)
T 3bz5_A 245 LTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC- 304 (457)
T ss_dssp CSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC-
T ss_pred CCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc-
Confidence 99753 457788888888664 56778899998887776 57889999999999998877774
Q ss_pred CcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCC
Q 038552 323 LGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSL 402 (659)
Q Consensus 323 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 402 (659)
..++|+.|++++| +.++ .|++++|++++. .++.+++|+.|++++|++++ ++.|
T Consensus 305 --~~~~L~~L~l~~~-------------~~L~-~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L 357 (457)
T 3bz5_A 305 --QAAGITELDLSQN-------------PKLV-YLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSV 357 (457)
T ss_dssp --TTCCCSCCCCTTC-------------TTCC-EEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTG
T ss_pred --CCCcceEechhhc-------------ccCC-EEECCCCccccc---ccccCCcCcEEECCCCCCCC--------cccc
Confidence 3466777777766 3455 899999999874 38899999999999999985 3567
Q ss_pred CeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhc
Q 038552 403 EYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLK 445 (659)
Q Consensus 403 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 445 (659)
+.|++++|.+.|. ..+..|+.+++++|+++|.+|..+.
T Consensus 358 ~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 358 GKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp GGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred ccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 8888999999876 3456788899999999999987653
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3e-35 Score=310.94 Aligned_cols=348 Identities=29% Similarity=0.409 Sum_probs=282.6
Q ss_pred cCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCc
Q 038552 52 GNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLK 131 (659)
Q Consensus 52 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 131 (659)
..+++++.|++.++.+. .+| .+..+++|++|++++|.+++..+ +.++++|++|++++|.++ .++. +. .+++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LA-NLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCC
T ss_pred hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-hc-CCCCCC
Confidence 34678888898888874 344 47788899999999888885433 888888999999888887 4444 43 788888
Q ss_pred EEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEE
Q 038552 132 ALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVI 211 (659)
Q Consensus 132 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L 211 (659)
+|++++|.+++.. . +.++++|++|++++|.+.+. + .++.+++|+.|++. +.+.. ...+..+++|++|
T Consensus 116 ~L~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~--------~~~~~~l~~L~~L 182 (466)
T 1o6v_A 116 GLTLFNNQITDID-P-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTD--------LKPLANLTTLERL 182 (466)
T ss_dssp EEECCSSCCCCCG-G-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCC--------CGGGTTCTTCCEE
T ss_pred EEECCCCCCCCCh-H-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccC--------chhhccCCCCCEE
Confidence 8888888887653 2 78888888888888887753 2 47788888888885 33321 1236666777777
Q ss_pred EccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCC
Q 038552 212 SLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSL 291 (659)
Q Consensus 212 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 291 (659)
++++|.+.+ + ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+
T Consensus 183 ~l~~n~l~~--------------------------~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 183 DISSNKVSD--------------------------I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 233 (466)
T ss_dssp ECCSSCCCC--------------------------C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred ECcCCcCCC--------------------------C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCc
Confidence 776665542 1 236778899999999999987655 77899999999999999
Q ss_pred CCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccc
Q 038552 292 QGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQ 371 (659)
Q Consensus 292 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~ 371 (659)
.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..++.++ .|++++|.+.+..+
T Consensus 234 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~-~L~L~~n~l~~~~~-- 304 (466)
T 1o6v_A 234 KDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT-NLELNENQLEDISP-- 304 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCS-EEECCSSCCSCCGG--
T ss_pred ccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccC-eEEcCCCcccCchh--
Confidence 854 458899999999999999986554 8899999999999999986544 78889998 99999999987654
Q ss_pred cccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCC
Q 038552 372 VGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFME 451 (659)
Q Consensus 372 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 451 (659)
+..+++|++|+|++|++++..| +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++..| +..+++|+
T Consensus 305 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 378 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378 (466)
T ss_dssp GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence 8899999999999999997765 78999999999999999976 478999999999999999998877 88999999
Q ss_pred eeeCcCCcCccc
Q 038552 452 FLDLSYNHFEGE 463 (659)
Q Consensus 452 ~l~l~~n~l~~~ 463 (659)
.|++++|++++.
T Consensus 379 ~L~l~~n~~~~~ 390 (466)
T 1o6v_A 379 QLGLNDQAWTNA 390 (466)
T ss_dssp EEECCCEEEECC
T ss_pred EEeccCCcccCC
Confidence 999999999873
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=308.56 Aligned_cols=322 Identities=20% Similarity=0.180 Sum_probs=259.8
Q ss_pred CCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeec
Q 038552 9 LIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGE 88 (659)
Q Consensus 9 L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 88 (659)
-+.++.+++.++ .+|..+. .++++|++++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|++|++++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 357888888887 6677664 5899999999999988888999999999999999999888889999999999999999
Q ss_pred CcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCcccc
Q 038552 89 NRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKV 168 (659)
Q Consensus 89 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 168 (659)
|.+++..+..|.++++|++|++++|.+++..+..+. .+++|+.|++++|.+++..+..+.++++|++|++++|.+++..
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHcc-ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 999866666789999999999999999855555444 8899999999999998888888999999999999999998877
Q ss_pred ccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCC
Q 038552 169 SIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIP 248 (659)
Q Consensus 169 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 248 (659)
+..|..+++|+.|++++|.+... ....+..+++|+.|++++|...+.+|....... +|+.|++++|.+++..+
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAI------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPY 241 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEE------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC-CCSEEEEESSCCCSCCH
T ss_pred hhHhcccCCCcEEeCCCCcCcEe------ChhhcccCcccceeeCCCCccccccCcccccCc-cccEEECcCCcccccCH
Confidence 77889999999999999988753 234567788899999998887777776655544 67788888887775443
Q ss_pred cccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCC
Q 038552 249 PGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQI 328 (659)
Q Consensus 249 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 328 (659)
..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..|..+++|++|++++|.+++..+..|..+++
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 56777777888888877777666667777777888888777777777777777777777777777777655556777777
Q ss_pred CCEEeCCCccccc
Q 038552 329 LRMFNASRNKLTG 341 (659)
Q Consensus 329 L~~L~l~~n~l~~ 341 (659)
|+.|++++|++..
T Consensus 322 L~~L~l~~N~l~c 334 (477)
T 2id5_A 322 LETLILDSNPLAC 334 (477)
T ss_dssp CCEEECCSSCEEC
T ss_pred cCEEEccCCCccC
Confidence 7777777777763
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.3e-34 Score=285.66 Aligned_cols=254 Identities=27% Similarity=0.459 Sum_probs=217.4
Q ss_pred cCCEEEcccCcccc--cCCcccccCCCcCeeeccc-ccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEE
Q 038552 232 TMTDFRIGANQISG--TIPPGIRNLVNLIALTMEI-NKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVEL 308 (659)
Q Consensus 232 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 308 (659)
.++.|++++|.+++ .+|..++.+++|++|++++ |.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45666666666666 6677777778888888874 77777778778888888888888888877778778888888888
Q ss_pred EccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcc-cccceeccccccccCCCccccccCCCCceeecCCCc
Q 038552 309 PLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSIT-TLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQ 387 (659)
Q Consensus 309 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 387 (659)
++++|.+.+.+|..+..+++|++|++++|++++.+|..+..++ .++ .|++++|.+.+.+|..+..++ |++|+|++|.
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~-~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT-SMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC-EEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc-EEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 8888888877888888888888888888888878888888877 666 788888888888888888887 9999999999
Q ss_pred ccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC
Q 038552 388 FSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK 467 (659)
Q Consensus 388 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~ 467 (659)
+++..|..+..+++|++|++++|.+.+.+|. +..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9988999999999999999999999977765 888999999999999999999999999999999999999999999998
Q ss_pred CccCCcccccccCCCCCcccC
Q 038552 468 GVFSNKTKISLQGNVKLCGGI 488 (659)
Q Consensus 468 ~~~~~~~~~~~~~n~~lc~~~ 488 (659)
+.+++++.+++.+|+++|+.+
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTT
T ss_pred ccccccChHHhcCCCCccCCC
Confidence 888999999999999999853
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.2e-33 Score=287.79 Aligned_cols=309 Identities=22% Similarity=0.225 Sum_probs=146.7
Q ss_pred CCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEec
Q 038552 31 LNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYL 110 (659)
Q Consensus 31 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 110 (659)
.++++|+++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..++++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 45555555555555333333455555555555555554444445555555555555555555444445555555555555
Q ss_pred cCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCC
Q 038552 111 PFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGM 190 (659)
Q Consensus 111 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 190 (659)
++|.++ .+|..+ +.++++|++|++++|.+.+..+..+..+++|++|++++|.++.
T Consensus 125 ~~n~l~-~l~~~~------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 125 ERNDLS-SLPRGI------------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CSSCCC-CCCTTT------------------------TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCccC-cCCHHH------------------------hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 555554 444443 3444444444444444444444444445555555555444432
Q ss_pred CCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCC
Q 038552 191 GTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT 270 (659)
Q Consensus 191 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 270 (659)
. .+..+++|+.|++++|.+.+ +...+.|+.|++++|.+...
T Consensus 180 ~---------~~~~l~~L~~L~l~~n~l~~------------------------------~~~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 180 V---------DLSLIPSLFHANVSYNLLST------------------------------LAIPIAVEELDASHNSINVV 220 (390)
T ss_dssp C---------CGGGCTTCSEEECCSSCCSE------------------------------EECCSSCSEEECCSSCCCEE
T ss_pred c---------ccccccccceeecccccccc------------------------------cCCCCcceEEECCCCeeeec
Confidence 1 12223334444444333221 11112344444444444322
Q ss_pred CCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhc
Q 038552 271 IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSI 350 (659)
Q Consensus 271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 350 (659)
|. ...++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++++
T Consensus 221 -~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------- 286 (390)
T 3o6n_A 221 -RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--------- 286 (390)
T ss_dssp -EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE---------
T ss_pred -cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc---------
Confidence 11 1124555666666655532 345555555555555555555555555555555555555554431
Q ss_pred ccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEE
Q 038552 351 TTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFN 430 (659)
Q Consensus 351 ~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 430 (659)
+|..+..+++|++|+|++|+++ .+|..+..+++|++|++++|.+... + +..+++|+.|+
T Consensus 287 -----------------~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~ 345 (390)
T 3o6n_A 287 -----------------LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLT 345 (390)
T ss_dssp -----------------EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEE
T ss_pred -----------------cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEE
Confidence 1112233445555555555554 2333344455555555555555432 1 34444555555
Q ss_pred CCCCcccc
Q 038552 431 VSSNNLSG 438 (659)
Q Consensus 431 l~~n~l~~ 438 (659)
+++|++..
T Consensus 346 l~~N~~~~ 353 (390)
T 3o6n_A 346 LSHNDWDC 353 (390)
T ss_dssp CCSSCEEH
T ss_pred cCCCCccc
Confidence 55555543
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.2e-33 Score=304.34 Aligned_cols=338 Identities=18% Similarity=0.205 Sum_probs=254.5
Q ss_pred CCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEE
Q 038552 102 ISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181 (659)
Q Consensus 102 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (659)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|+.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 567888888888887 6777666578888888888888887777788888888888888888887777777888888888
Q ss_pred ECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeee
Q 038552 182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALT 261 (659)
Q Consensus 182 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 261 (659)
++++|.++... ...+..+++|++|++++|.+. +..|..++.+++|+.|+
T Consensus 129 ~L~~n~l~~l~------~~~~~~l~~L~~L~Ls~N~l~-------------------------~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 129 VLERNDLSSLP------RGIFHNTPKLTTLSMSNNNLE-------------------------RIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp ECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCC-------------------------BCCTTTTTTCTTCCEEE
T ss_pred EeeCCCCCCCC------HHHhccCCCCCEEEeeCCcCC-------------------------CCChhhhhcCCcCcEEE
Confidence 88888776421 122355555666665555544 44445566677777777
Q ss_pred cccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCccccc
Q 038552 262 MEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTG 341 (659)
Q Consensus 262 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 341 (659)
+++|.+++. .++.+++|+.|++++|.+.+ +...++|+.|++++|.+....+. + .++|+.|++++|.+++
T Consensus 178 L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 178 LSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD 246 (597)
T ss_dssp CTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC
T ss_pred CcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC
Confidence 777777654 24556777888888777663 34456788888888887643322 2 2578888888888875
Q ss_pred ccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCccccc
Q 038552 342 ALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLS 421 (659)
Q Consensus 342 ~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 421 (659)
+..+..++.+. .|++++|.+.+..|..+..+++|++|+|++|.+++ +|..+..+++|++|+|++|.+. .+|..+.
T Consensus 247 --~~~l~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~ 321 (597)
T 3oja_B 247 --TAWLLNYPGLV-EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP 321 (597)
T ss_dssp --CGGGGGCTTCS-EEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred --ChhhccCCCCC-EEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc
Confidence 36677888887 88888888888888889999999999999999986 4666778999999999999998 5677788
Q ss_pred CCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCcccCCCC
Q 038552 422 SLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDEL 491 (659)
Q Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~ 491 (659)
.+++|+.|++++|.+++.. +..+++|+.|++++|++.|.++. ..+..+....+.+++..|+.....
T Consensus 322 ~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~~~~ 387 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKIDYQL 387 (597)
T ss_dssp HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTTCEE
T ss_pred cCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcchhc
Confidence 8999999999999998652 66788999999999999886532 345556666778888888764433
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.9e-33 Score=286.15 Aligned_cols=335 Identities=18% Similarity=0.209 Sum_probs=252.0
Q ss_pred CCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCE
Q 038552 101 NISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180 (659)
Q Consensus 101 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (659)
.+.++++|+++++.+. .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|+.+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3578888888888887 777776657888888888888888776777888888888888888888777777888888888
Q ss_pred EECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCee
Q 038552 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIAL 260 (659)
Q Consensus 181 L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 260 (659)
|++++|.++... ...+..+++|++|++++|.+. +..+..+..+++|+.|
T Consensus 122 L~L~~n~l~~l~------~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 122 LVLERNDLSSLP------RGIFHNTPKLTTLSMSNNNLE-------------------------RIEDDTFQATTSLQNL 170 (390)
T ss_dssp EECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCC-------------------------BCCTTTTSSCTTCCEE
T ss_pred EECCCCccCcCC------HHHhcCCCCCcEEECCCCccC-------------------------ccChhhccCCCCCCEE
Confidence 888888776321 112345566666666655544 3344456677777777
Q ss_pred ecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccc
Q 038552 261 TMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT 340 (659)
Q Consensus 261 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 340 (659)
++++|.+++. .+..+++|+.|++++|.+.+ +...++|++|++++|.+... |.. ..++|+.|++++|.++
T Consensus 171 ~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 171 QLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLT 239 (390)
T ss_dssp ECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCC
T ss_pred ECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCc
Confidence 7777777654 24567788888888887763 33446788888888887744 322 2467888888888887
Q ss_pred cccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccc
Q 038552 341 GALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSL 420 (659)
Q Consensus 341 ~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 420 (659)
+. ..+..++.++ +|++++|.+.+..|..+..+++|++|+|++|++++ +|..+..+++|++|++++|.+. .+|..+
T Consensus 240 ~~--~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~ 314 (390)
T 3o6n_A 240 DT--AWLLNYPGLV-EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314 (390)
T ss_dssp CC--GGGGGCTTCS-EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred cc--HHHcCCCCcc-EEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccc
Confidence 53 5677788887 88888888888888889999999999999999985 4556678899999999999998 556678
Q ss_pred cCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCccc
Q 038552 421 SSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGG 487 (659)
Q Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 487 (659)
..+++|+.|++++|.++... +..+++|+.|++++|++.+.... ..+..+....+.+++..|..
T Consensus 315 ~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 315 PQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp HHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred cccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 88999999999999998652 67788999999999999875432 33455556666777777753
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.1e-32 Score=274.67 Aligned_cols=307 Identities=25% Similarity=0.322 Sum_probs=201.7
Q ss_pred ccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCC
Q 038552 99 ICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNL 178 (659)
Q Consensus 99 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (659)
+..+++|++|+++++.+. .++. +. .+++|++|++++|.+++. +. +..+++|++|++++|.+++. ..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred chhcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 345666677777766665 4443 32 466666666666666643 22 66666666666666666542 246666666
Q ss_pred CEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcC
Q 038552 179 SWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLI 258 (659)
Q Consensus 179 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 258 (659)
++|++++|.+... ..+..+++|++|++++|... ..+ ..+..+++|+
T Consensus 113 ~~L~l~~n~i~~~--------~~~~~l~~L~~L~l~~n~~~-------------------------~~~-~~~~~l~~L~ 158 (347)
T 4fmz_A 113 RELYLNEDNISDI--------SPLANLTKMYSLNLGANHNL-------------------------SDL-SPLSNMTGLN 158 (347)
T ss_dssp SEEECTTSCCCCC--------GGGTTCTTCCEEECTTCTTC-------------------------CCC-GGGTTCTTCC
T ss_pred CEEECcCCcccCc--------hhhccCCceeEEECCCCCCc-------------------------ccc-cchhhCCCCc
Confidence 6666666665431 11455555555555555332 222 2255666666
Q ss_pred eeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcc
Q 038552 259 ALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNK 338 (659)
Q Consensus 259 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 338 (659)
+|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 159 ~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232 (347)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred EEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCc
Confidence 66666666654333 5666777777777776664322 6666777777777776664333 6666777777777777
Q ss_pred cccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcc
Q 038552 339 LTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPL 418 (659)
Q Consensus 339 l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 418 (659)
+++..+ +..++.++ +|++++|.+.+. ..+..+++|++|++++|++++. ..+..+++|++|++++|.+.+..+.
T Consensus 233 l~~~~~--~~~l~~L~-~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 233 ITDLSP--LANLSQLT-WLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CCCCGG--GTTCTTCC-EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred cCCCcc--hhcCCCCC-EEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence 664322 56666666 677777777643 4577888888899988888764 4578888899999999988888888
Q ss_pred cccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCc
Q 038552 419 SLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE 461 (659)
Q Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~ 461 (659)
.+..+++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888999999999998887765 778888999999988875
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.9e-32 Score=296.85 Aligned_cols=309 Identities=20% Similarity=0.208 Sum_probs=160.8
Q ss_pred CCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEec
Q 038552 31 LNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYL 110 (659)
Q Consensus 31 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 110 (659)
.+++.+++++|.+....+..|.++++|++|++++|.+.+..|..|+.+++|++|+|++|.+++..|..|+++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 45555666555555444444555556666666655555555555555666666666665555555555555555555555
Q ss_pred cCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCC
Q 038552 111 PFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGM 190 (659)
Q Consensus 111 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 190 (659)
++|.++ .+|..++..+++|++|++++|.+++..|..+.++++|++|++++|.+++.. ++.+++|+.|++++|.+++
T Consensus 131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 555555 444444334555555555555555555555555555555555555554321 3334445555555444432
Q ss_pred CCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCC
Q 038552 191 GTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT 270 (659)
Q Consensus 191 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 270 (659)
+...++|+.|+++ +|.++...+ . ..++|+.|++++|.+++
T Consensus 207 -----------l~~~~~L~~L~ls-------------------------~n~l~~~~~-~--~~~~L~~L~L~~n~l~~- 246 (597)
T 3oja_B 207 -----------LAIPIAVEELDAS-------------------------HNSINVVRG-P--VNVELTILKLQHNNLTD- 246 (597)
T ss_dssp -----------EECCTTCSEEECC-------------------------SSCCCEEEC-S--CCSCCCEEECCSSCCCC-
T ss_pred -----------ccCCchhheeecc-------------------------CCccccccc-c--cCCCCCEEECCCCCCCC-
Confidence 1112233333333 333331111 1 11345555555555554
Q ss_pred CCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhc
Q 038552 271 IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSI 350 (659)
Q Consensus 271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 350 (659)
+..+..+++|+.|++++|.+.+..|..|+.+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++
T Consensus 247 -~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~---------- 314 (597)
T 3oja_B 247 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL---------- 314 (597)
T ss_dssp -CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC----------
T ss_pred -ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC----------
Confidence 2445555556666666665555555555555566666666555553 3444444555555555555554
Q ss_pred ccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCC
Q 038552 351 TTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG 414 (659)
Q Consensus 351 ~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 414 (659)
.+|..+..+++|++|+|++|.+++.. +..+++|++|++++|.+.+
T Consensus 315 ----------------~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 315 ----------------HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp ----------------CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred ----------------ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 33444455556666666666655331 4455666666666666654
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1e-31 Score=273.00 Aligned_cols=305 Identities=25% Similarity=0.407 Sum_probs=174.4
Q ss_pred CCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEE
Q 038552 29 SLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWI 108 (659)
Q Consensus 29 ~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 108 (659)
.+++|+.|+++++.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.++. + .++..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEE
Confidence 44455555555555542 22 245555555555555555332 22 5555555555555555542 2 235555555555
Q ss_pred eccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCC
Q 038552 109 YLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNL 188 (659)
Q Consensus 109 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 188 (659)
++++|.+. .++. + ..+++|+.|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 116 ~l~~n~i~-~~~~-~-~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 116 YLNEDNIS-DISP-L-ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp ECTTSCCC-CCGG-G-TTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred ECcCCccc-Cchh-h-ccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence 55555554 3333 2 245555555555554333322 25555555555555555543332 45555555555555554
Q ss_pred CCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCC
Q 038552 189 GMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLH 268 (659)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 268 (659)
... ..+..+++|+.|++++|.+.+..+ +..+. +|+.|++++|.+++..+ +..+++|+.|++++|.++
T Consensus 190 ~~~--------~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 190 EDI--------SPLASLTSLHYFTAYVNQITDITP--VANMT-RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp CCC--------GGGGGCTTCCEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ccc--------ccccCCCccceeecccCCCCCCch--hhcCC-cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence 321 114455555666666555553322 33332 56666666666654322 667777777777777776
Q ss_pred CCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhh
Q 038552 269 GTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLL 348 (659)
Q Consensus 269 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 348 (659)
+. +.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..| +.
T Consensus 257 ~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~ 330 (347)
T 4fmz_A 257 DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330 (347)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence 53 4567777788888888777753 346777788888888887777777777777788888888887775544 66
Q ss_pred hcccccceecccccccc
Q 038552 349 SITTLTLSLDLSNNLLN 365 (659)
Q Consensus 349 ~~~~l~~~L~l~~n~l~ 365 (659)
.++.+. .|++++|.++
T Consensus 331 ~l~~L~-~L~l~~N~i~ 346 (347)
T 4fmz_A 331 SLSKMD-SADFANQVIK 346 (347)
T ss_dssp GCTTCS-EESSSCC---
T ss_pred hhhccc-eeehhhhccc
Confidence 677777 7888877764
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1e-32 Score=274.91 Aligned_cols=255 Identities=31% Similarity=0.491 Sum_probs=235.3
Q ss_pred CCCcEEEccCCcccc--ccChhHHhccccCCEEEccc-CcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCc
Q 038552 206 SSLKVISLYANQFGG--ELPHSIANLSSTMTDFRIGA-NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQ 282 (659)
Q Consensus 206 ~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 282 (659)
.+++.|++++|.+.+ .+|..+..+. +|+.|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 468888888888888 7888888876 899999995 889989999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCC-CCCEEeCCCcccccccchhhhhcccccceecccc
Q 038552 283 QLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQ-ILRMFNASRNKLTGALPHQLLSITTLTLSLDLSN 361 (659)
Q Consensus 283 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~ 361 (659)
+|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+++.+|..+..+. ++ .|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~-~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA-FVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS-EEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc-EEECcC
Confidence 999999999999999999999999999999999999999999998 999999999999999999999887 77 999999
Q ss_pred ccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccch
Q 038552 362 NLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIP 441 (659)
Q Consensus 362 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 441 (659)
|.+.+..|..+..+++|++|+|++|.+++.+|. +..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 999999999999999999999999999977665 8889999999999999999999999999999999999999999998
Q ss_pred hhhcCCCCCCeeeCcCCcCcccCC
Q 038552 442 EFLKNLSFMEFLDLSYNHFEGEVP 465 (659)
Q Consensus 442 ~~l~~l~~L~~l~l~~n~l~~~~p 465 (659)
.. ..+++|+.+++++|+..+..|
T Consensus 286 ~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CC-ccccccChHHhcCCCCccCCC
Confidence 86 889999999999999554433
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=4.5e-35 Score=310.26 Aligned_cols=386 Identities=15% Similarity=0.129 Sum_probs=212.7
Q ss_pred CCCcEEEccCCccCcccccc-cCCCCCCCEEEeecCcCCc----cCcccccCCCCCCEEeccCccccccChHHHhcCCC-
Q 038552 55 SALKVFYIIGNSLGGKIPTT-LGLLRNLVDLNVGENRFSG----MFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLP- 128 (659)
Q Consensus 55 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~- 128 (659)
++|++|++++|.+....... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+...+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 34555666655553322222 4556666666666666653 24455666677777777777666444444444454
Q ss_pred ---CCcEEEccCCcCCc----ccChhccCCCCCCEEEccCCCCcccccccc-----CCCCCCCEEECCCCCCCCCCCCCc
Q 038552 129 ---NLKALAIGGNNFFG----SIPNSLSNASNLEILDLTSNQLKGKVSIDF-----SSLKNLSWLNLEQNNLGMGTANDL 196 (659)
Q Consensus 129 ---~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~ 196 (659)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.++.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-- 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-- 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--
Confidence 57777777777763 446677788888888888887765433322 2355788888888877642211
Q ss_pred cccccccCCCCCcEEEccCCccccccChhHHhc----cccCCEEEcccCccccc----CCcccccCCCcCeeecccccCC
Q 038552 197 DFVTFLTNCSSLKVISLYANQFGGELPHSIANL----SSTMTDFRIGANQISGT----IPPGIRNLVNLIALTMEINKLH 268 (659)
Q Consensus 197 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 268 (659)
.+...+..+++|++|++++|.+.+..+..+... ..+|+.|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 234455667778888888877665433333321 12455555555555432 2333444455555555555443
Q ss_pred CCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccc----cCccCcCCCCCCEEeCCCcccccccc
Q 038552 269 GTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGN----IPSSLGNCQILRMFNASRNKLTGALP 344 (659)
Q Consensus 269 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~ 344 (659)
+.....+. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+
T Consensus 241 ~~~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 241 DVGMAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred hHHHHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 22110000 11112344455555555544432 33334444555555555555443322
Q ss_pred hhhhhc-----ccccceeccccccccCC----CccccccCCCCceeecCCCcccccCCccccC-----CCCCCeEECCCC
Q 038552 345 HQLLSI-----TTLTLSLDLSNNLLNGS----LPLQVGNLKNLVKLDISGNQFSGVIPVTLSA-----CVSLEYLNISRN 410 (659)
Q Consensus 345 ~~~~~~-----~~l~~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-----~~~L~~L~l~~n 410 (659)
..+... +.++ .|++++|.+++. ++..+..+++|++|+|++|.+++..+..+.. .++|++|++++|
T Consensus 302 ~~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 302 RLLCETLLEPGCQLE-SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHHTSTTCCCC-EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhccCCccce-eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 222221 3444 555555555443 3445566677777777777776554433332 567777777777
Q ss_pred CCCC----CCcccccCCCCCCEEECCCCcccccchhh----hc-CCCCCCeeeCcCCcCcc
Q 038552 411 FFHG----IIPLSLSSLKSIKEFNVSSNNLSGLIPEF----LK-NLSFMEFLDLSYNHFEG 462 (659)
Q Consensus 411 ~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----l~-~l~~L~~l~l~~n~l~~ 462 (659)
.+++ .+|..+..+++|+.|++++|++++..... +. ...+|+.|++.++.+..
T Consensus 381 ~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 7775 56666777777888888887776542222 21 23457777776666543
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.1e-34 Score=307.38 Aligned_cols=395 Identities=17% Similarity=0.134 Sum_probs=257.7
Q ss_pred CCCCCEEEccCCcccccCchh-hcCCCCCcEEeccccCCCc----cccccccCCCCCcEEEccCCccCccccccc-CCCC
Q 038552 6 YSNLIELRVSKNKLEGQIPEE-IGSLLNLQTLAIDFNYLTG----QLPDFVGNLSALKVFYIIGNSLGGKIPTTL-GLLR 79 (659)
Q Consensus 6 ~~~L~~L~ls~n~~~~~~~~~-~~~~~~L~~L~ls~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~ 79 (659)
.++|++|++++|.+++..... +..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 367899999999988654444 7889999999999999885 356778899999999999999865444333 3454
Q ss_pred ----CCCEEEeecCcCCc----cCcccccCCCCCCEEeccCccccccChHHHh----cCCCCCcEEEccCCcCCcc----
Q 038552 80 ----NLVDLNVGENRFSG----MFPRSICNISSLEWIYLPFNRFSGSLPLDIA----VNLPNLKALAIGGNNFFGS---- 143 (659)
Q Consensus 80 ----~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~~l~~L~~L~l~~n~~~~~---- 143 (659)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ...++|++|++++|.+++.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999884 4688899999999999999998754444333 2356799999999988763
Q ss_pred cChhccCCCCCCEEEccCCCCccccccccC-----CCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCcc
Q 038552 144 IPNSLSNASNLEILDLTSNQLKGKVSIDFS-----SLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQF 218 (659)
Q Consensus 144 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 218 (659)
++..+..+++|++|++++|.+++.....+. ..++|++|++++|.++..... .++..+..+++|++|++++|.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR--DLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH--HHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH--HHHHHHHhCCCccEEeccCCcC
Confidence 355677789999999999988765444443 356888888888877642110 1345566677777777777766
Q ss_pred ccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCC----CCccccCCCCCcEEEccCCCCCCC
Q 038552 219 GGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT----IPDTIGELKNLQQLSLYNNSLQGS 294 (659)
Q Consensus 219 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~ 294 (659)
.+.....+.. ..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 240 ~~~~~~~l~~--------------------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 240 GDVGMAELCP--------------------GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp HHHHHHHHHH--------------------HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred ChHHHHHHHH--------------------HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 5322211111 1112355666666666666543 344455566666666666665432
Q ss_pred CCcccc-----CCCCCcEEEccCCccccc----cCccCcCCCCCCEEeCCCcccccccchhhhhcccccceecccccccc
Q 038552 295 IPSSLG-----NLTKLVELPLSYNNLQGN----IPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLN 365 (659)
Q Consensus 295 ~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~ 365 (659)
.+..+. ..++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+..+..
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~---------------- 363 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ---------------- 363 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH----------------
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH----------------
Confidence 222221 224666666666665543 3334445556666666666554332222211
Q ss_pred CCCccccc-cCCCCceeecCCCcccc----cCCccccCCCCCCeEECCCCCCCCCCccc----cc-CCCCCCEEECCCCc
Q 038552 366 GSLPLQVG-NLKNLVKLDISGNQFSG----VIPVTLSACVSLEYLNISRNFFHGIIPLS----LS-SLKSIKEFNVSSNN 435 (659)
Q Consensus 366 ~~~~~~l~-~l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~-~l~~L~~L~l~~n~ 435 (659)
.+. ..++|++|+|++|.+++ .++..+..+++|++|++++|.+.+..... +. ...+|+.|++.++.
T Consensus 364 -----~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 364 -----GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp -----HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred -----HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 111 14677778888877775 56666777788888888888776542222 21 23468888888877
Q ss_pred ccccchhh
Q 038552 436 LSGLIPEF 443 (659)
Q Consensus 436 l~~~~~~~ 443 (659)
.....++.
T Consensus 439 ~~~~~~~~ 446 (461)
T 1z7x_W 439 WSEEMEDR 446 (461)
T ss_dssp CCHHHHHH
T ss_pred cCHHHHHH
Confidence 76554443
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.5e-30 Score=259.47 Aligned_cols=288 Identities=19% Similarity=0.254 Sum_probs=187.9
Q ss_pred CCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEecc
Q 038552 32 NLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLP 111 (659)
Q Consensus 32 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 111 (659)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..+..|+++++|++|++++|.+++..|..++++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6888888888877 5665443 678888888888877666778888888888888888887778888888888888888
Q ss_pred CccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCcc--ccccccCCCCCCCEEECCCCCCC
Q 038552 112 FNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKG--KVSIDFSSLKNLSWLNLEQNNLG 189 (659)
Q Consensus 112 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~ 189 (659)
+|.++ .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 88887 6776543 678888888888887767778888888888888887753 55666777888888888887765
Q ss_pred CCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCC
Q 038552 190 MGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHG 269 (659)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 269 (659)
... ..+. ++|++|++++|.+.+ ..+..+..+++|+.|++++|.+.+
T Consensus 185 ~l~-------~~~~--~~L~~L~l~~n~l~~-------------------------~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 185 TIP-------QGLP--PSLTELHLDGNKITK-------------------------VDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp SCC-------SSCC--TTCSEEECTTSCCCE-------------------------ECTGGGTTCTTCCEEECCSSCCCE
T ss_pred cCC-------cccc--ccCCEEECCCCcCCc-------------------------cCHHHhcCCCCCCEEECCCCcCce
Confidence 321 1111 455555555555443 334445555555555555555555
Q ss_pred CCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcC------CCCCCEEeCCCccccc--
Q 038552 270 TIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGN------CQILRMFNASRNKLTG-- 341 (659)
Q Consensus 270 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~l~~-- 341 (659)
..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|.. .+.++.+++++|.+..
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 44445555555555555555555 44555555555555555555555443333322 2455666666665542
Q ss_pred ccchhhhhcccccceeccccc
Q 038552 342 ALPHQLLSITTLTLSLDLSNN 362 (659)
Q Consensus 342 ~~~~~~~~~~~l~~~L~l~~n 362 (659)
..|..+..+..+. .+++++|
T Consensus 310 i~~~~f~~~~~l~-~l~L~~N 329 (330)
T 1xku_A 310 IQPSTFRCVYVRA-AVQLGNY 329 (330)
T ss_dssp SCGGGGTTCCCGG-GEEC---
T ss_pred cCcccccccccee-EEEeccc
Confidence 2334444455555 5666655
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.7e-30 Score=258.62 Aligned_cols=288 Identities=21% Similarity=0.255 Sum_probs=155.0
Q ss_pred CCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEEC
Q 038552 104 SLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNL 183 (659)
Q Consensus 104 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (659)
+++.++++++.++ .+|..+ .++|+.|++++|.+++..+..+.++++|++|++++|.+++..+..|+.+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4666666666655 555443 245666666666665555555666666666666666665555555555566666655
Q ss_pred CCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecc
Q 038552 184 EQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTME 263 (659)
Q Consensus 184 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 263 (659)
++|.++. +|..+. .+|++|++++|.+++..+..+..+++|+.|+++
T Consensus 110 ~~n~l~~-------------------------------l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 110 SKNHLVE-------------------------------IPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CSSCCCS-------------------------------CCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred CCCcCCc-------------------------------cCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence 5555432 111111 134444444444443333344555555555555
Q ss_pred cccCCC--CCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCccccc
Q 038552 264 INKLHG--TIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTG 341 (659)
Q Consensus 264 ~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 341 (659)
+|.+.. ..+..+..+ +|++|++++|.+.+ +|..+. ++|++|++++|.+.+..
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~---------------------- 209 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIE---------------------- 209 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCC----------------------
T ss_pred CCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccC----------------------
Confidence 555532 334444444 55555555555543 222221 34444444444444333
Q ss_pred ccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCccccc
Q 038552 342 ALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLS 421 (659)
Q Consensus 342 ~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 421 (659)
+..+..++.++ .|++++|.+.+..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|.+++..+..|.
T Consensus 210 --~~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 210 --LEDLLRYSKLY-RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp --TTSSTTCTTCS-CCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred --HHHhcCCCCCC-EEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 34444444444 4555555555444555666666666777766666 4555666666777777777776655555554
Q ss_pred C------CCCCCEEECCCCccc--ccchhhhcCCCCCCeeeCcCCc
Q 038552 422 S------LKSIKEFNVSSNNLS--GLIPEFLKNLSFMEFLDLSYNH 459 (659)
Q Consensus 422 ~------l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~l~l~~n~ 459 (659)
. .+.|+.|++++|++. +..|..+..+++|+.+++++|.
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 3 356777777777765 4556667777777777777663
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.4e-30 Score=259.70 Aligned_cols=288 Identities=18% Similarity=0.233 Sum_probs=209.6
Q ss_pred CCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEecc
Q 038552 32 NLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLP 111 (659)
Q Consensus 32 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 111 (659)
+++.++++++.++ .+|..+ .++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6888999888887 566655 3688999999988877777788899999999999998887778888889999999999
Q ss_pred CccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCcc--ccccccCCCCCCCEEECCCCCCC
Q 038552 112 FNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKG--KVSIDFSSLKNLSWLNLEQNNLG 189 (659)
Q Consensus 112 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~ 189 (659)
+|.++ .+|..++ ++|++|++++|.+++..+..+.++++|+.|++++|.++. ..+..+..+ +|+.|++++|.++
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 88887 7776543 688888888888887666678888888888888888753 555666666 7777777777765
Q ss_pred CCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCC
Q 038552 190 MGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHG 269 (659)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 269 (659)
... ..+. + +|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 186 ~l~-------~~~~--~-------------------------~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 186 GIP-------KDLP--E-------------------------TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp SCC-------SSSC--S-------------------------SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred ccC-------cccc--C-------------------------CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 421 1111 3 45555555555555555667777777777777777777
Q ss_pred CCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcC------CCCCCEEeCCCcccc--c
Q 038552 270 TIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGN------CQILRMFNASRNKLT--G 341 (659)
Q Consensus 270 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~l~--~ 341 (659)
..+..+..+++|++|++++|++. .+|..+..+++|++|++++|.+++..+..|.. .+.|+.+++++|.+. +
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 66667777778888888877777 66666777778888888887777655555543 356777888888776 4
Q ss_pred ccchhhhhcccccceecccccc
Q 038552 342 ALPHQLLSITTLTLSLDLSNNL 363 (659)
Q Consensus 342 ~~~~~~~~~~~l~~~L~l~~n~ 363 (659)
..|..+..++.++ .+++++|+
T Consensus 311 ~~~~~~~~l~~L~-~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRL-AIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCST-TEEC----
T ss_pred cCcccccccchhh-hhhccccc
Confidence 5566666777776 67777664
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4e-29 Score=251.69 Aligned_cols=289 Identities=18% Similarity=0.221 Sum_probs=219.7
Q ss_pred CCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEee
Q 038552 8 NLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVG 87 (659)
Q Consensus 8 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 87 (659)
+++.++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 7899999999987 5676664 689999999999998777789999999999999999988889999999999999999
Q ss_pred cCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCc--ccChhccCCCCCCEEEccCCCCc
Q 038552 88 ENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFG--SIPNSLSNASNLEILDLTSNQLK 165 (659)
Q Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~ 165 (659)
+|.++ .+|..+. ++|++|++++|.++ .++...+..+++|+.|++++|.+.. ..+..+.++++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99998 5666554 79999999999998 5665555589999999999999864 66788999999999999999998
Q ss_pred cccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccc
Q 038552 166 GKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISG 245 (659)
Q Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 245 (659)
. +|..+. ++|++|++++|.++. ..+..+..+++|++|++++|.+.+..+.
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------------------- 234 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITK------VDAASLKGLNNLAKLGLSFNSISAVDNG--------------------- 234 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCE------ECTGGGTTCTTCCEEECCSSCCCEECTT---------------------
T ss_pred c-CCcccc--ccCCEEECCCCcCCc------cCHHHhcCCCCCCEEECCCCcCceeChh---------------------
Confidence 5 444333 899999999999875 2345677788888888888877644333
Q ss_pred cCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccC------CCCCcEEEccCCcccc--
Q 038552 246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGN------LTKLVELPLSYNNLQG-- 317 (659)
Q Consensus 246 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~-- 317 (659)
.+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.++.|++++|.+..
T Consensus 235 ----~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 235 ----SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp ----TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred ----hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 3445555666666666555 44555566666666666666666554444432 3567777777776652
Q ss_pred ccCccCcCCCCCCEEeCCCcc
Q 038552 318 NIPSSLGNCQILRMFNASRNK 338 (659)
Q Consensus 318 ~~~~~~~~~~~L~~L~l~~n~ 338 (659)
..|..|..+.+++.+++++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 345567777777777777663
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.2e-31 Score=289.96 Aligned_cols=427 Identities=14% Similarity=0.070 Sum_probs=275.1
Q ss_pred chhhcCCCCCcEEeccccCCC---ccccccc------------cCCCCCcEEEccCCccCcccccccCC-CC-CCCEEEe
Q 038552 24 PEEIGSLLNLQTLAIDFNYLT---GQLPDFV------------GNLSALKVFYIIGNSLGGKIPTTLGL-LR-NLVDLNV 86 (659)
Q Consensus 24 ~~~~~~~~~L~~L~ls~~~~~---~~~~~~~------------~~l~~L~~L~l~~n~l~~~~~~~~~~-l~-~L~~L~l 86 (659)
+..+..+++|+.|+++++... +.+|..+ ..+++|++|+|++|.+.+..+..+.. ++ +|++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 344556677777777664321 1222222 26777888888877766555555554 33 4888888
Q ss_pred ecCc-CCc-cCcccccCCCCCCEEeccCcccccc----ChHHHhcCCCCCcEEEccCCcCC----cccChhccCCCCCCE
Q 038552 87 GENR-FSG-MFPRSICNISSLEWIYLPFNRFSGS----LPLDIAVNLPNLKALAIGGNNFF----GSIPNSLSNASNLEI 156 (659)
Q Consensus 87 ~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~ 156 (659)
++|. ++. .++.....+++|++|++++|.+++. ++. +...+++|++|++++|.++ +.++..+.++++|+.
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 7775 211 1222334677888888887776543 222 2235778888888877776 233444567788888
Q ss_pred EEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEE
Q 038552 157 LDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDF 236 (659)
Q Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 236 (659)
|++++|.+.+ ++..+..+++|+.|+++...... ........+..+++|+.|+++.+. .+.+|..+.... +|++|
T Consensus 225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~-~L~~L 298 (592)
T 3ogk_B 225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDI---GMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAA-QIRKL 298 (592)
T ss_dssp EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCT---TCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGG-GCCEE
T ss_pred EeccCccHHH-HHHHHhhhhHHHhhccccccccc---chHHHHHHhhccccccccCccccc-hhHHHHHHhhcC-CCcEE
Confidence 8888877765 44567777888888876532211 001334556677788888887653 234555555544 78888
Q ss_pred EcccCcccccCC-cccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccC-----------CCCCCC-CCccccCCC
Q 038552 237 RIGANQISGTIP-PGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYN-----------NSLQGS-IPSSLGNLT 303 (659)
Q Consensus 237 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-----------n~l~~~-~~~~~~~l~ 303 (659)
++++|.+++... ..+..+++|+.|+++++...+.++..+..+++|++|++++ +.+++. ++.....++
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence 888887654433 3357788888888873322223333445678888888883 344432 222234588
Q ss_pred CCcEEEccCCccccccCccCcC-CCCCCEEeCC----Ccccccc-----cchhhhhcccccceecccccc--ccCCCccc
Q 038552 304 KLVELPLSYNNLQGNIPSSLGN-CQILRMFNAS----RNKLTGA-----LPHQLLSITTLTLSLDLSNNL--LNGSLPLQ 371 (659)
Q Consensus 304 ~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~~~~l~~~L~l~~n~--l~~~~~~~ 371 (659)
+|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..++.++ .|++++|. +++..+..
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~-~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR-RFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC-EEEEECCGGGCCHHHHHH
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC-EEEEecCCCCccHHHHHH
Confidence 8999998888887766555554 7888999885 5666642 444466788887 88887543 55444444
Q ss_pred cc-cCCCCceeecCCCccccc-CCccccCCCCCCeEECCCCCCCCC-CcccccCCCCCCEEECCCCcccccchhhh-cCC
Q 038552 372 VG-NLKNLVKLDISGNQFSGV-IPVTLSACVSLEYLNISRNFFHGI-IPLSLSSLKSIKEFNVSSNNLSGLIPEFL-KNL 447 (659)
Q Consensus 372 l~-~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l 447 (659)
+. .+++|++|+|++|++++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|+++......+ ..+
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~ 537 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMAR 537 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCC
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhC
Confidence 44 488999999999998763 445567899999999999998654 34445678999999999999886543333 456
Q ss_pred CCCCeeeCcCC
Q 038552 448 SFMEFLDLSYN 458 (659)
Q Consensus 448 ~~L~~l~l~~n 458 (659)
|.+....+..+
T Consensus 538 p~l~~~~~~~~ 548 (592)
T 3ogk_B 538 PYWNIELIPSR 548 (592)
T ss_dssp TTEEEEEECCC
T ss_pred CCcEEEEecCc
Confidence 76665555544
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=4.8e-31 Score=288.58 Aligned_cols=408 Identities=12% Similarity=0.089 Sum_probs=285.1
Q ss_pred cccccccCCCCCcEEEccCCcc---CcccccccC------------CCCCCCEEEeecCcCCccCcccccC-CC-CCCEE
Q 038552 46 QLPDFVGNLSALKVFYIIGNSL---GGKIPTTLG------------LLRNLVDLNVGENRFSGMFPRSICN-IS-SLEWI 108 (659)
Q Consensus 46 ~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~------------~l~~L~~L~l~~n~l~~~~~~~~~~-l~-~L~~L 108 (659)
..+..+..+++|++|+++++.. .+.+|..++ .+++|++|+|++|.+++..+..+.. ++ +|++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 3445567788999999987642 133343333 6889999999999887666666665 34 49999
Q ss_pred eccCcc-ccccChHHHhcCCCCCcEEEccCCcCCcc----cChhccCCCCCCEEEccCCCCc----cccccccCCCCCCC
Q 038552 109 YLPFNR-FSGSLPLDIAVNLPNLKALAIGGNNFFGS----IPNSLSNASNLEILDLTSNQLK----GKVSIDFSSLKNLS 179 (659)
Q Consensus 109 ~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~ 179 (659)
++++|. ++..-...+...+++|++|++++|.+++. ++..+..+++|++|++++|.++ +.++..+.++++|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 998876 22111122233688999999999987655 3445667889999999998886 23444456788999
Q ss_pred EEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccc---cccChhHHhccccCCEEEcccCcccccCCcccccCCC
Q 038552 180 WLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFG---GELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVN 256 (659)
Q Consensus 180 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 256 (659)
+|++++|.+.+ ++..+..+++|+.|+++..... +..+..+.... +++.+.+.++. .+.+|..+..+++
T Consensus 224 ~L~L~~~~~~~-------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~-~~~l~~~~~~~~~ 294 (592)
T 3ogk_B 224 SVKVGDFEILE-------LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR-KLCRLGLSYMG-PNEMPILFPFAAQ 294 (592)
T ss_dssp EEECSSCBGGG-------GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT-TCCEEEETTCC-TTTGGGGGGGGGG
T ss_pred EEeccCccHHH-------HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc-cccccCccccc-hhHHHHHHhhcCC
Confidence 99999887653 4566778889999998753222 12223333333 78888887753 3356777788889
Q ss_pred cCeeecccccCCCCCC-ccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccC-----------Cccccc-cCccC
Q 038552 257 LIALTMEINKLHGTIP-DTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSY-----------NNLQGN-IPSSL 323 (659)
Q Consensus 257 L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~-~~~~~ 323 (659)
|++|++++|.+++... ..+..+++|++|+++++...+.++..+..+++|++|++++ +.+++. ++...
T Consensus 295 L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 9999999888664433 3457889999999984332223344446688899999983 455533 22234
Q ss_pred cCCCCCCEEeCCCcccccccchhhhh-cccccceeccc----cccccCC-----CccccccCCCCceeecCCCc--cccc
Q 038552 324 GNCQILRMFNASRNKLTGALPHQLLS-ITTLTLSLDLS----NNLLNGS-----LPLQVGNLKNLVKLDISGNQ--FSGV 391 (659)
Q Consensus 324 ~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~l~~~L~l~----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~ 391 (659)
..+++|++|++..|.+++..+..+.. ++.++ .|+++ .|.+++. ++..+..+++|++|+|++|. +++.
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~-~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLC-DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCC-EEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCc-EEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 56888999999888888777777765 77787 88886 5667653 33446778999999997543 5555
Q ss_pred CCcccc-CCCCCCeEECCCCCCCCC-CcccccCCCCCCEEECCCCccccc-chhhhcCCCCCCeeeCcCCcCccc
Q 038552 392 IPVTLS-ACVSLEYLNISRNFFHGI-IPLSLSSLKSIKEFNVSSNNLSGL-IPEFLKNLSFMEFLDLSYNHFEGE 463 (659)
Q Consensus 392 ~~~~~~-~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~l~l~~n~l~~~ 463 (659)
.+..+. .+++|++|++++|.+++. ++..+.++++|+.|++++|.+++. ++..+..+++|+.|++++|+++..
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 444443 488899999999998763 444567889999999999998655 344556789999999999987643
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.9e-28 Score=244.02 Aligned_cols=256 Identities=20% Similarity=0.255 Sum_probs=198.0
Q ss_pred cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCC--CCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEE
Q 038552 232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT--IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELP 309 (659)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 309 (659)
+++.|++++|.++...+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 566666666666643333467778888888888877632 2455667788888888888877 4566677888888888
Q ss_pred ccCCccccccC-ccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccC-CCccccccCCCCceeecCCCc
Q 038552 310 LSYNNLQGNIP-SSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNG-SLPLQVGNLKNLVKLDISGNQ 387 (659)
Q Consensus 310 l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~ 387 (659)
+++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++.++ +|++++|.+.+ ..|..+..+++|++|+|++|.
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE-VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC-EEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC-EEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 88888875544 4677888888888888888877777777788887 78888888876 567788899999999999999
Q ss_pred ccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCC-CCCeeeCcCCcCcccCCC
Q 038552 388 FSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLS-FMEFLDLSYNHFEGEVPK 466 (659)
Q Consensus 388 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~l~l~~n~l~~~~p~ 466 (659)
+++..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..|..+..++ +|+.|++++|++.+.++.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 9988888999999999999999999988777889999999999999999998888888885 899999999999887653
Q ss_pred CC---ccCCcccccccCCCCCcccCC
Q 038552 467 KG---VFSNKTKISLQGNVKLCGGID 489 (659)
Q Consensus 467 ~~---~~~~~~~~~~~~n~~lc~~~~ 489 (659)
.. .......+....+...|..+.
T Consensus 267 ~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 267 QSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp HHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred HHHHHHHHhhhhhhccccccccCCch
Confidence 21 122333444555666775543
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.2e-27 Score=239.53 Aligned_cols=224 Identities=19% Similarity=0.300 Sum_probs=189.4
Q ss_pred cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552 232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS 311 (659)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 311 (659)
.++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 5677777777776 56777777888888888888777 67777778888888888888877 667778888888888888
Q ss_pred CCccccccCccCcC---------CCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceee
Q 038552 312 YNNLQGNIPSSLGN---------CQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLD 382 (659)
Q Consensus 312 ~n~l~~~~~~~~~~---------~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 382 (659)
+|.+.+.+|..+.. +++|++|++++|.++ .+|..+..++.++ .|++++|.+.+ +|..+..+++|++|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~-~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLK-SLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCC-EEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCC-EEEccCCCCCc-CchhhccCCCCCEEE
Confidence 87777777766554 888999999999888 7888888888888 89999999885 566789999999999
Q ss_pred cCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCc
Q 038552 383 ISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE 461 (659)
Q Consensus 383 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~ 461 (659)
|++|++.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|++.+.+|+.+..+++|+.+++..+.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999877654
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=8.5e-28 Score=236.57 Aligned_cols=233 Identities=22% Similarity=0.226 Sum_probs=149.3
Q ss_pred CCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCc-cccccCccCcCCCCCCEEe
Q 038552 255 VNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNN-LQGNIPSSLGNCQILRMFN 333 (659)
Q Consensus 255 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~ 333 (659)
++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|. +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555554444455555555555555555554445555555555555555554 4433344555555555555
Q ss_pred CCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCC
Q 038552 334 ASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFH 413 (659)
Q Consensus 334 l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 413 (659)
+++|.+++..|..+..++.++ +|++++|.+.+..+..+..+++|++|+|++|++++..+..+..+++|++|++++|.+.
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQ-YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCEECHhHhhCCcCCC-EEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 555555544455555555555 5666666665555556777788888888888887666666778888888888888888
Q ss_pred CCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCcccC
Q 038552 414 GIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGI 488 (659)
Q Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 488 (659)
+..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.++.......+.......+...|..+
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEES
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCc
Confidence 777777888888888888888888776677788888888888888887766644333334444455566666543
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.5e-28 Score=245.70 Aligned_cols=282 Identities=18% Similarity=0.166 Sum_probs=171.6
Q ss_pred CCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEE
Q 038552 29 SLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWI 108 (659)
Q Consensus 29 ~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 108 (659)
.|+.....+.+++.++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3455555666666666 4555443 467777777777765555567777777777777777776666667777777777
Q ss_pred eccCccccccChHHHhcCCCCCcEEEccCCcCCcccC-hhccCCCCCCEEEccCC-CCccccccccCCCCCCCEEECCCC
Q 038552 109 YLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIP-NSLSNASNLEILDLTSN-QLKGKVSIDFSSLKNLSWLNLEQN 186 (659)
Q Consensus 109 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n 186 (659)
++++|.++ .+|...+..+++|++|++++|+++...+ ..+.++++|++|++++| .+.+..+..|..+++|++|++++|
T Consensus 106 ~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 106 DLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp ECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 77777776 5555544467777777777777764333 35677777777777777 355555666777777777777777
Q ss_pred CCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeeccccc
Q 038552 187 NLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINK 266 (659)
Q Consensus 187 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 266 (659)
.++. ..+..+..+++|++|++++|.+. .+|..+....++|+.|++++|.+++..+..+..
T Consensus 185 ~l~~------~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------------- 244 (353)
T 2z80_A 185 DLQS------YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST------------- 244 (353)
T ss_dssp TCCE------ECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------
T ss_pred CcCc------cCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccc-------------
Confidence 7654 23455667777777888777764 444443332335666666666665433222111
Q ss_pred CCCCCCccccCCCCCcEEEccCCCCCC----CCCccccCCCCCcEEEccCCccccccCcc-CcCCCCCCEEeCCCccccc
Q 038552 267 LHGTIPDTIGELKNLQQLSLYNNSLQG----SIPSSLGNLTKLVELPLSYNNLQGNIPSS-LGNCQILRMFNASRNKLTG 341 (659)
Q Consensus 267 l~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n~l~~ 341 (659)
......++.+++.++.+.+ .+|..+..+++|++|++++|.++ .+|.. |..+++|++|++++|++.+
T Consensus 245 --------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 245 --------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp ----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred --------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 1123334444444444443 24445556666666666666665 33333 4666666666666666664
Q ss_pred cc
Q 038552 342 AL 343 (659)
Q Consensus 342 ~~ 343 (659)
..
T Consensus 316 ~~ 317 (353)
T 2z80_A 316 SC 317 (353)
T ss_dssp CH
T ss_pred cC
Confidence 43
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.2e-27 Score=247.49 Aligned_cols=251 Identities=22% Similarity=0.265 Sum_probs=206.9
Q ss_pred cEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccC
Q 038552 209 KVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYN 288 (659)
Q Consensus 209 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 288 (659)
..++.++..++ .+|..+ +.+++.|++++|.+++..+..+.++++|+.|++++|.+.+..+..|..+++|++|+|++
T Consensus 57 ~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 34444444444 344322 23677788888888777777888888899999988888887778888888999999999
Q ss_pred CCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccch-hhhhcccccceeccccccccCC
Q 038552 289 NSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPH-QLLSITTLTLSLDLSNNLLNGS 367 (659)
Q Consensus 289 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~l~~~L~l~~n~l~~~ 367 (659)
|.+.+..+..|..+++|++|++++|.+....+..|..+++|+.|++++|...+.++. .+..++.++ .|++++|.+.+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~-~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK-YLNLGMCNIKDM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC-EEECTTSCCSSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC-EEECCCCccccc
Confidence 988877777788888999999999988866666788888999999988555445554 567788887 899999988754
Q ss_pred CccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCC
Q 038552 368 LPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNL 447 (659)
Q Consensus 368 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 447 (659)
| .+..+++|++|+|++|++++..|..|.++++|++|++++|.+.+..+..|.++++|+.|+|++|.+++..+..+..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 3 57889999999999999999889999999999999999999998888899999999999999999998888888999
Q ss_pred CCCCeeeCcCCcCcccCCC
Q 038552 448 SFMEFLDLSYNHFEGEVPK 466 (659)
Q Consensus 448 ~~L~~l~l~~n~l~~~~p~ 466 (659)
++|+.|++++|++.+.+..
T Consensus 290 ~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TTCCEEECCSSCEECSTTT
T ss_pred cCCCEEEccCCCcCCCCCc
Confidence 9999999999999887764
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=6.2e-27 Score=245.30 Aligned_cols=251 Identities=22% Similarity=0.285 Sum_probs=208.2
Q ss_pred cEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccC
Q 038552 209 KVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYN 288 (659)
Q Consensus 209 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 288 (659)
..++..+..++ .+|..+. ..++.|++++|.+++..+..+.++++|+.|+|++|.+.+..+..|..+++|++|+|++
T Consensus 46 ~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 34444444444 3444332 3677778888877777777888888899999999888877778888889999999999
Q ss_pred CCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccch-hhhhcccccceeccccccccCC
Q 038552 289 NSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPH-QLLSITTLTLSLDLSNNLLNGS 367 (659)
Q Consensus 289 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~l~~~L~l~~n~l~~~ 367 (659)
|.+.+..+..|..+++|++|++++|.+....+..|..+++|+.|++++|...+.++. .+..++.++ .|++++|.+..
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~-~L~L~~n~l~~- 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR-YLNLAMCNLRE- 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC-EEECTTSCCSS-
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC-eecCCCCcCcc-
Confidence 988877777788889999999999988876677888889999999988654445544 577788887 89999998874
Q ss_pred CccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCC
Q 038552 368 LPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNL 447 (659)
Q Consensus 368 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 447 (659)
+| .+..+++|++|+|++|++++..|..|.++++|++|++++|.+.+..+..|.++++|+.|+|++|++++..+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 44 58889999999999999999889999999999999999999999989999999999999999999998888888999
Q ss_pred CCCCeeeCcCCcCcccCCC
Q 038552 448 SFMEFLDLSYNHFEGEVPK 466 (659)
Q Consensus 448 ~~L~~l~l~~n~l~~~~p~ 466 (659)
++|+.|++++|++.+.+..
T Consensus 279 ~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTCCEEECCSSCEECSSTT
T ss_pred cCCCEEEcCCCCccCCCCc
Confidence 9999999999999987764
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=9.9e-28 Score=243.84 Aligned_cols=281 Identities=17% Similarity=0.173 Sum_probs=179.1
Q ss_pred CCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhcc
Q 038552 151 ASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLS 230 (659)
Q Consensus 151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 230 (659)
|+.....+.+++.++ .+|..+. ++|++|++++|.++.. ....+..+++|++|++++|.++
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~----------- 89 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYI------SNSDLQRCVNLQALVLTSNGIN----------- 89 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECTTSCCC-----------
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCccc------CHHHhccCCCCCEEECCCCccC-----------
Confidence 444455666666666 3333332 3666666666666531 1123445555555555555444
Q ss_pred ccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCC-ccccCCCCCcEEE
Q 038552 231 STMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP-SSLGNLTKLVELP 309 (659)
Q Consensus 231 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 309 (659)
+..+..+..+++|++|++++|.+++..+..++.+++|++|++++|++.+..+ ..+..+++|++|+
T Consensus 90 --------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 90 --------------TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp --------------EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred --------------ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence 3444455666666666666666665444446666677777777776664333 3566677777777
Q ss_pred ccCCc-cccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcc
Q 038552 310 LSYNN-LQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQF 388 (659)
Q Consensus 310 l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 388 (659)
+++|. +.+..+..+..+++|+.|++++|.+.+..|..+..++.++ +|++++|.+....+..+..+++|++|++++|.+
T Consensus 156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS-HLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE-EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred CCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC-eecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence 77663 4444455666667777777777777666666666666666 677777776533333345577788888888877
Q ss_pred cccCCccc---cCCCCCCeEECCCCCCCC----CCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCc
Q 038552 389 SGVIPVTL---SACVSLEYLNISRNFFHG----IIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE 461 (659)
Q Consensus 389 ~~~~~~~~---~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~ 461 (659)
++..+..+ ..++.++.++++++.+.+ .+|..+..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus 235 ~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 76544433 245677888888888775 35677888889999999999888544444688889999999999988
Q ss_pred ccCCC
Q 038552 462 GEVPK 466 (659)
Q Consensus 462 ~~~p~ 466 (659)
+.+|.
T Consensus 315 ~~~~~ 319 (353)
T 2z80_A 315 CSCPR 319 (353)
T ss_dssp CCHHH
T ss_pred CcCCC
Confidence 87763
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.4e-27 Score=234.84 Aligned_cols=226 Identities=21% Similarity=0.306 Sum_probs=172.8
Q ss_pred CCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEE
Q 038552 206 SSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLS 285 (659)
Q Consensus 206 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 285 (659)
++++.|++++|.+. .+|..+..+. +|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..++.+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 34444444444444 4444444433 5556666666555 55666666667777777777666 5566666777777777
Q ss_pred ccCCCCCCCCCcccc---------CCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccce
Q 038552 286 LYNNSLQGSIPSSLG---------NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLS 356 (659)
Q Consensus 286 l~~n~l~~~~~~~~~---------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~ 356 (659)
+++|++.+.+|..+. ++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..++.++ .
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~-~ 233 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE-E 233 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCC-E
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCC-E
Confidence 777666666666554 3888888888888887 77778888888888888888888 4666788888887 8
Q ss_pred eccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcc
Q 038552 357 LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436 (659)
Q Consensus 357 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 436 (659)
|++++|.+.+.+|..+..+++|++|+|++|++.+.+|..+.++++|++|+|++|.+.+.+|..+.++++|+.+++..+.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred cc
Q 038552 437 SG 438 (659)
Q Consensus 437 ~~ 438 (659)
..
T Consensus 314 ~~ 315 (328)
T 4fcg_A 314 AQ 315 (328)
T ss_dssp CC
T ss_pred HH
Confidence 53
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.7e-27 Score=230.64 Aligned_cols=252 Identities=19% Similarity=0.192 Sum_probs=199.8
Q ss_pred EEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCC
Q 038552 210 VISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNN 289 (659)
Q Consensus 210 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 289 (659)
.++.+++.++ .+|..+ ..+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 15 ~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4444444443 333322 236777777777777666667788888888888888888777888888888888888888
Q ss_pred C-CCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCC
Q 038552 290 S-LQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSL 368 (659)
Q Consensus 290 ~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~ 368 (659)
. +....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..++.++ .|++++|.+.+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT-HLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc-EEECCCCcccccC
Confidence 7 7666677888888888888888888877777888888888888888888866666677888887 8899999888766
Q ss_pred ccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCC
Q 038552 369 PLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLS 448 (659)
Q Consensus 369 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 448 (659)
+..+..+++|++|+|++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++....+.. ....
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~ 248 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA 248 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence 667899999999999999999998999999999999999999999888888999999999999999998654321 1112
Q ss_pred CCCeeeCcCCcCcccCCCC
Q 038552 449 FMEFLDLSYNHFEGEVPKK 467 (659)
Q Consensus 449 ~L~~l~l~~n~l~~~~p~~ 467 (659)
.++.+..+.+.+.+..|..
T Consensus 249 ~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HHHHCCSEECCCBEEESGG
T ss_pred HHHhcccccCccccCCchH
Confidence 3456667888888888754
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.1e-27 Score=233.10 Aligned_cols=277 Identities=21% Similarity=0.229 Sum_probs=178.0
Q ss_pred CEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccc--cChhHHhcccc
Q 038552 155 EILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGE--LPHSIANLSST 232 (659)
Q Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~~ 232 (659)
+.++.+++.++. +|..+ .++|++|++++|.++... ...+..+++|++|++++|.+... .+..+.
T Consensus 10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----- 75 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLP------HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF----- 75 (306)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCC------TTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-----
T ss_pred CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccC------HhHhhccccCCEEECCCCccCcccCcccccc-----
Confidence 467777777763 44333 257888888888776421 12356777888888887776521 233333
Q ss_pred CCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCC-ccccCCCCCcEEEcc
Q 038552 233 MTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP-SSLGNLTKLVELPLS 311 (659)
Q Consensus 233 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~ 311 (659)
.+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|+++
T Consensus 76 --------------------~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 134 (306)
T 2z66_A 76 --------------------GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134 (306)
T ss_dssp --------------------SCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT
T ss_pred --------------------cccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECC
Confidence 3444555555555444 233344555555555555555553332 345555555555555
Q ss_pred CCccccccCccCcCCCCCCEEeCCCccccc-ccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccc
Q 038552 312 YNNLQGNIPSSLGNCQILRMFNASRNKLTG-ALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSG 390 (659)
Q Consensus 312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 390 (659)
+|.+.+..+..+..+++|++|++++|.+.+ ..|..+..++.++ .|++++|.+.+..|..+..+++|++|+|++|.+++
T Consensus 135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC-EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 555555555555555556666666555554 3455555555555 56666666666666777888899999999999987
Q ss_pred cCCccccCCCCCCeEECCCCCCCCCCcccccCCC-CCCEEECCCCcccccch--hhhcCCCCCCeeeCcCCcCcccCCCC
Q 038552 391 VIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLK-SIKEFNVSSNNLSGLIP--EFLKNLSFMEFLDLSYNHFEGEVPKK 467 (659)
Q Consensus 391 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~--~~l~~l~~L~~l~l~~n~l~~~~p~~ 467 (659)
..+..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|++++..+ ....-+...+.+.+..+.+.+..|..
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 7777888899999999999999988888888884 89999999999976532 22233344556677777787776643
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3.7e-26 Score=240.28 Aligned_cols=250 Identities=22% Similarity=0.217 Sum_probs=220.2
Q ss_pred cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552 232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS 311 (659)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 311 (659)
....++..+..++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|+|++|.+.+..+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3456777777776 4665543 689999999999999889999999999999999999998888999999999999999
Q ss_pred CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCC-ccccccCCCCceeecCCCcccc
Q 038552 312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSL-PLQVGNLKNLVKLDISGNQFSG 390 (659)
Q Consensus 312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~ 390 (659)
+|.+++..+..|..+++|++|++++|.+....+..+..++.++ .|++++|...+.+ +..+..+++|++|+|++|.+++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM-RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC-EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc-EEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 9999977777899999999999999999976667888999998 9999995444444 4578999999999999999986
Q ss_pred cCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC-Cc
Q 038552 391 VIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GV 469 (659)
Q Consensus 391 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~-~~ 469 (659)
. | .+..+++|++|+|++|.+.+..|..|.++++|+.|++++|.+++..|..+..+++|+.|++++|++++..+.. ..
T Consensus 211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 4 4 5889999999999999999999999999999999999999999999999999999999999999998655543 45
Q ss_pred cCCcccccccCCCCCccc
Q 038552 470 FSNKTKISLQGNVKLCGG 487 (659)
Q Consensus 470 ~~~~~~~~~~~n~~lc~~ 487 (659)
+++++.+++++||+.|..
T Consensus 289 l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp CTTCCEEECCSSCEECST
T ss_pred ccCCCEEEccCCCcCCCC
Confidence 678899999999999853
No 62
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=5.9e-30 Score=280.14 Aligned_cols=397 Identities=18% Similarity=0.154 Sum_probs=197.6
Q ss_pred CCCCCcEEeccccCCCcccccccc-CCCCCcEEEccCC-ccCcc-cccccCCCCCCCEEEeecCcCCccCcccc----cC
Q 038552 29 SLLNLQTLAIDFNYLTGQLPDFVG-NLSALKVFYIIGN-SLGGK-IPTTLGLLRNLVDLNVGENRFSGMFPRSI----CN 101 (659)
Q Consensus 29 ~~~~L~~L~ls~~~~~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~ 101 (659)
.+++|++|++++|.+++..+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+++..+..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 445555555555555544444443 4555555555555 23211 22223345555555555555443322222 23
Q ss_pred CCCCCEEeccCcc--ccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCC-------Ccccccccc
Q 038552 102 ISSLEWIYLPFNR--FSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQ-------LKGKVSIDF 172 (659)
Q Consensus 102 l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-------l~~~~~~~l 172 (659)
+++|++|++++|. +.......+...+++|++|++++|.....++..+..+++|++|+++.+. +.+ ++..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHH
Confidence 4455555555553 1111111111234555555555552222244445555555555543332 111 12234
Q ss_pred CCCCCCCEEE-CCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCccc
Q 038552 173 SSLKNLSWLN-LEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI 251 (659)
Q Consensus 173 ~~l~~L~~L~-l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 251 (659)
.++++|+.+. +..... ..++..+..+++|+.|++++|.+++..... .+
T Consensus 262 ~~~~~L~~Ls~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~------------------------~~ 310 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVP-------AYLPAVYSVCSRLTTLNLSYATVQSYDLVK------------------------LL 310 (594)
T ss_dssp HTCTTCCEEECCBTCCG-------GGGGGGHHHHTTCCEEECTTCCCCHHHHHH------------------------HH
T ss_pred hcCCCcccccCCcccch-------hhHHHHHHhhCCCCEEEccCCCCCHHHHHH------------------------HH
Confidence 4445555442 211100 012222223444444444444433221111 13
Q ss_pred ccCCCcCeeecccccCCCC-CCccccCCCCCcEEEccC---------CCCCCCCCccc-cCCCCCcEEEccCCccccccC
Q 038552 252 RNLVNLIALTMEINKLHGT-IPDTIGELKNLQQLSLYN---------NSLQGSIPSSL-GNLTKLVELPLSYNNLQGNIP 320 (659)
Q Consensus 252 ~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~---------n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~ 320 (659)
..+++|+.|++++| +.+. ++.....+++|++|++.+ +.+++.....+ ..+++|+.|.++.|.+++...
T Consensus 311 ~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~ 389 (594)
T 2p1m_B 311 CQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAAL 389 (594)
T ss_dssp TTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHH
T ss_pred hcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHH
Confidence 34555555555555 2211 111122355566665532 22222111111 235666666666666654433
Q ss_pred ccCc-CCCCCCEEeCC--C----ccccc-----ccchhhhhcccccceeccccccccCCCcccccc-CCCCceeecCCCc
Q 038552 321 SSLG-NCQILRMFNAS--R----NKLTG-----ALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGN-LKNLVKLDISGNQ 387 (659)
Q Consensus 321 ~~~~-~~~~L~~L~l~--~----n~l~~-----~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~~n~ 387 (659)
..+. .+++|+.|+++ + +.++. .++..+..++.++ .|++++ .+++..+..+.. +++|++|+|++|.
T Consensus 390 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~-~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 390 ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR-RLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC-EEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc-EEeecC-cccHHHHHHHHHhchhccEeeccCCC
Confidence 3333 46667777766 2 33331 1222245566676 777766 555444444544 7889999999998
Q ss_pred ccccCCccc-cCCCCCCeEECCCCCCCCCCcc-cccCCCCCCEEECCCCcccccchhhh-cCCCCCCeeeCcCCcC
Q 038552 388 FSGVIPVTL-SACVSLEYLNISRNFFHGIIPL-SLSSLKSIKEFNVSSNNLSGLIPEFL-KNLSFMEFLDLSYNHF 460 (659)
Q Consensus 388 l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~l~l~~n~l 460 (659)
+++..+..+ ..+++|++|+|++|.+++.... ....+++|+.|++++|+++......+ ..+|.|+...+..+..
T Consensus 468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 876555444 6688999999999998654433 33458899999999998865434444 5677776666665543
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5.4e-26 Score=238.16 Aligned_cols=250 Identities=19% Similarity=0.205 Sum_probs=220.4
Q ss_pred cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552 232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS 311 (659)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 311 (659)
....++..+..++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|+|++|.+.+..+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3456777777776 5676554 689999999999998888999999999999999999998888899999999999999
Q ss_pred CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCC-CccccccCCCCceeecCCCcccc
Q 038552 312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGS-LPLQVGNLKNLVKLDISGNQFSG 390 (659)
Q Consensus 312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~ 390 (659)
+|.+++..+..|..+++|++|++++|.+....+..+..++.++ .|++++|+..+. .+..+.++++|++|+|++|.++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~-~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR-RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC-EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC-EeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 9999977677899999999999999999977777888999998 999999554444 44578999999999999999984
Q ss_pred cCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC-Cc
Q 038552 391 VIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GV 469 (659)
Q Consensus 391 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~-~~ 469 (659)
+| .+..+++|++|+|++|.+.+..|..|.++++|+.|++++|.+++..+..|..+++|+.|++++|++++..+.. ..
T Consensus 200 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 200 -IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp -CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred -cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 44 5889999999999999999998999999999999999999999999999999999999999999999765543 45
Q ss_pred cCCcccccccCCCCCccc
Q 038552 470 FSNKTKISLQGNVKLCGG 487 (659)
Q Consensus 470 ~~~~~~~~~~~n~~lc~~ 487 (659)
+.+++.+++++||+.|..
T Consensus 278 l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CTTCCEEECCSSCEECSS
T ss_pred ccCCCEEEcCCCCccCCC
Confidence 688899999999999954
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4.8e-28 Score=241.28 Aligned_cols=246 Identities=22% Similarity=0.201 Sum_probs=173.2
Q ss_pred CCCCcEEEccCCccccccChhHHhccccCCEEEcccCccc-ccCCcccc-------cCCCcCeeecccccCCCCCCccc-
Q 038552 205 CSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQIS-GTIPPGIR-------NLVNLIALTMEINKLHGTIPDTI- 275 (659)
Q Consensus 205 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~~~- 275 (659)
.++|+.|++++|.+ .+|..+.. .++.|++++|.+. ..+|..+. ++++|++|++++|.+++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34455555666655 45554444 2555666666663 33444443 56777777777777777777665
Q ss_pred -cCCCCCcEEEccCCCCCCCCCccccCC-----CCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccc--cchhh
Q 038552 276 -GELKNLQQLSLYNNSLQGSIPSSLGNL-----TKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGA--LPHQL 347 (659)
Q Consensus 276 -~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~ 347 (659)
..+++|++|++++|.+.+. |..++.+ ++|++|++++|.+.+..|..+..+++|++|++++|++.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 6777777777777777765 6666655 7777777777777766667777777777777777776654 23333
Q ss_pred --hhcccccceeccccccccCC--Cc-cccccCCCCceeecCCCcccccCC-ccccCCCCCCeEECCCCCCCCCCccccc
Q 038552 348 --LSITTLTLSLDLSNNLLNGS--LP-LQVGNLKNLVKLDISGNQFSGVIP-VTLSACVSLEYLNISRNFFHGIIPLSLS 421 (659)
Q Consensus 348 --~~~~~l~~~L~l~~n~l~~~--~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 421 (659)
..++.++ +|++++|.+.+. ++ ..+..+++|++|+|++|++++..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 196 ~~~~l~~L~-~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 196 CPLKFPTLQ-VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp CTTSCTTCC-EEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HhccCCCCC-EEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 5666776 777777777631 22 234567889999999998887664 45667888999999999988 6666665
Q ss_pred CCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcc
Q 038552 422 SLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEG 462 (659)
Q Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~ 462 (659)
++|+.|++++|++++. |. +..+++|+.|++++|++++
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7899999999999876 55 7888889999999998875
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.1e-28 Score=270.23 Aligned_cols=373 Identities=14% Similarity=0.107 Sum_probs=222.3
Q ss_pred CCCCCCEEEeecCcCCccCccccc-CCCCCCEEeccCc-cccccChHHHhcCCCCCcEEEccCCcCCcccChhc----cC
Q 038552 77 LLRNLVDLNVGENRFSGMFPRSIC-NISSLEWIYLPFN-RFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSL----SN 150 (659)
Q Consensus 77 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l----~~ 150 (659)
.+++|++|++++|.+++..+..+. .+++|++|++++| .++......+...+++|++|++++|.+++..+..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 344555555555555444333343 3555555555555 23211111222245555555555555443222222 24
Q ss_pred CCCCCEEEccCCC--Cccc-cccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCc-------ccc
Q 038552 151 ASNLEILDLTSNQ--LKGK-VSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQ-------FGG 220 (659)
Q Consensus 151 l~~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~-------~~~ 220 (659)
+++|+.|++++|. +... +...+..+++|++|++++|.... .++..+..+++|+.|++..+. +.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~- 255 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE------KLATLLQRAPQLEELGTGGYTAEVRPDVYS- 255 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH------HHHHHHHHCTTCSEEECSBCCCCCCHHHHH-
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH------HHHHHHhcCCcceEcccccccCccchhhHH-
Confidence 4455555555554 1111 11111234556666665541110 233444455556666544332 22
Q ss_pred ccChhHHhccccCCEEE-cccCcccccCCcccccCCCcCeeecccccCCCCCC-ccccCCCCCcEEEccCCCCCCC-CCc
Q 038552 221 ELPHSIANLSSTMTDFR-IGANQISGTIPPGIRNLVNLIALTMEINKLHGTIP-DTIGELKNLQQLSLYNNSLQGS-IPS 297 (659)
Q Consensus 221 ~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~-~~~ 297 (659)
.++..+.... +|+.+. +.... .+.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+. ++.
T Consensus 256 ~l~~~l~~~~-~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~ 332 (594)
T 2p1m_B 256 GLSVALSGCK-ELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV 332 (594)
T ss_dssp HHHHHHHTCT-TCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred HHHHHHhcCC-CcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence 1223343333 566652 22211 12344455678899999999998764322 33568999999999998 4322 222
Q ss_pred cccCCCCCcEEEccC---------CccccccCccC-cCCCCCCEEeCCCcccccccchhhh-hcccccceeccc--c---
Q 038552 298 SLGNLTKLVELPLSY---------NNLQGNIPSSL-GNCQILRMFNASRNKLTGALPHQLL-SITTLTLSLDLS--N--- 361 (659)
Q Consensus 298 ~~~~l~~L~~L~l~~---------n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~~L~l~--~--- 361 (659)
....+++|++|++++ +.+++.....+ ..+++|+.|.+..|.+++..+..+. .++.++ .|+++ +
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~-~L~L~~~~~~~ 411 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMT-RFRLCIIEPKA 411 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCC-EEEEEESSTTC
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcc-eeEeecccCCC
Confidence 334589999999944 34443322223 3489999999998998876666665 578888 89998 3
Q ss_pred -ccccCC-----CccccccCCCCceeecCCCcccccCCccccC-CCCCCeEECCCCCCCCCCcccc-cCCCCCCEEECCC
Q 038552 362 -NLLNGS-----LPLQVGNLKNLVKLDISGNQFSGVIPVTLSA-CVSLEYLNISRNFFHGIIPLSL-SSLKSIKEFNVSS 433 (659)
Q Consensus 362 -n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~ 433 (659)
+.+++. ++..+..+++|++|+|++ .+++..+..+.. +++|++|++++|.+++..+..+ .++++|+.|++++
T Consensus 412 ~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~ 490 (594)
T 2p1m_B 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490 (594)
T ss_dssp CCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEES
T ss_pred cccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcC
Confidence 455421 122367889999999988 676655555655 8999999999999976655555 6799999999999
Q ss_pred Ccccccchh-hhcCCCCCCeeeCcCCcCc
Q 038552 434 NNLSGLIPE-FLKNLSFMEFLDLSYNHFE 461 (659)
Q Consensus 434 n~l~~~~~~-~l~~l~~L~~l~l~~n~l~ 461 (659)
|.+++.... ....+++|+.|++++|+++
T Consensus 491 n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 491 CPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 999665444 4456899999999999984
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-26 Score=243.01 Aligned_cols=215 Identities=21% Similarity=0.185 Sum_probs=123.9
Q ss_pred cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552 232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS 311 (659)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 311 (659)
+++.|++++|.+++..|..+..+++|+.|++++|.+++..| +..+++|++|++++|.+.+.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 45555555555554444555555666666666665554433 555566666666666555321 12556666666
Q ss_pred CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccc-cCCCCceeecCCCcccc
Q 038552 312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVG-NLKNLVKLDISGNQFSG 390 (659)
Q Consensus 312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~ 390 (659)
+|.+++..+. .+++|+.|++++|.+++..|..+..++.+. .|++++|.+.+..|..+. .+++|++|+|++|.+++
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQ-YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEE-EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCC-EEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 6666544332 235566666666666655555555566665 566666666655555554 56666666666666665
Q ss_pred cCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCc
Q 038552 391 VIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE 461 (659)
Q Consensus 391 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~ 461 (659)
..+ +..+++|++|+|++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 422 2346666666666666665433 36666666666666666664 4555666666666666666665
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=8e-24 Score=227.68 Aligned_cols=268 Identities=26% Similarity=0.276 Sum_probs=169.7
Q ss_pred CCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEecc
Q 038552 32 NLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLP 111 (659)
Q Consensus 32 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 111 (659)
+++.|++++|.++ .+|..+. ++|++|++++|.+. .+|. .+++|++|++++|.++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4666666666665 4555443 56666666666664 3443 4566666666666665 3443 45666666666
Q ss_pred CccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCC
Q 038552 112 FNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMG 191 (659)
Q Consensus 112 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 191 (659)
+|.++ .+|. .+++|+.|++++|+++. +|.. +++|++|++++|.+++. +. .+++|+.|++++|.++..
T Consensus 110 ~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 110 SNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp SCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC
T ss_pred CCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCC
Confidence 66665 4444 35566666666666664 3332 36677777777766642 22 245667777777766542
Q ss_pred CCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCC
Q 038552 192 TANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTI 271 (659)
Q Consensus 192 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 271 (659)
+ ..+++|+.|++++|.+++ +|.. ..+|+.|++++|.++ .+|. .+++|+.|++++|.+++ +
T Consensus 177 -------~---~~~~~L~~L~Ls~N~l~~-l~~~----~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 177 -------P---MLPSGLQELSVSDNQLAS-LPTL----PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp -------C---CCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-C
T ss_pred -------c---ccCCCCcEEECCCCCCCC-CCCc----cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-C
Confidence 1 234667777777776653 3321 236677777777666 3343 24678888888887775 3
Q ss_pred CccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcc
Q 038552 272 PDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSIT 351 (659)
Q Consensus 272 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 351 (659)
| ..+++|+.|++++|.+. .+|. .+++|+.|++++|.++ .+|..+.++++|+.|++++|.+++..|..+..++
T Consensus 237 p---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 237 P---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp C---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred C---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 4 45577888888888887 4444 5677888888888887 6677788888888888888888877776666554
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2e-26 Score=230.07 Aligned_cols=193 Identities=16% Similarity=0.190 Sum_probs=100.8
Q ss_pred cccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCC
Q 038552 251 IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILR 330 (659)
Q Consensus 251 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 330 (659)
+..+++|++|++++|.+++. ...++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|+
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred hhhcCCCCEEECcCCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCC
Confidence 44445555555555544421 1224555555555555433222 234455555555555544444455555555
Q ss_pred EEeCCCcccccccchhhh-hcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCC
Q 038552 331 MFNASRNKLTGALPHQLL-SITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISR 409 (659)
Q Consensus 331 ~L~l~~n~l~~~~~~~~~-~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 409 (659)
+|++++|.+++..+..+. .++.++ .|++++|.+.+. + ....+++|++|+|++|++++. |..+..+++|++|++++
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~~l~~L~-~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAASSDTLE-HLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRN 223 (317)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCC-EEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTT
T ss_pred EEECCCCCCCcccHHHHhhccCcCC-EEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcC
Confidence 555555555544444332 344444 555555555432 1 222356666666666666643 33356666666666666
Q ss_pred CCCCCCCcccccCCCCCCEEECCCCccc-ccchhhhcCCCCCCeeeCc
Q 038552 410 NFFHGIIPLSLSSLKSIKEFNVSSNNLS-GLIPEFLKNLSFMEFLDLS 456 (659)
Q Consensus 410 n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~l~l~ 456 (659)
|.+. .+|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 224 N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp SCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred Cccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 6666 34555666666666666666665 4455555666666666665
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.2e-26 Score=231.16 Aligned_cols=224 Identities=20% Similarity=0.231 Sum_probs=180.9
Q ss_pred CcEEEccCCcc-ccccChhHH-------hccccCCEEEcccCcccccCCccc--ccCCCcCeeecccccCCCCCCccccC
Q 038552 208 LKVISLYANQF-GGELPHSIA-------NLSSTMTDFRIGANQISGTIPPGI--RNLVNLIALTMEINKLHGTIPDTIGE 277 (659)
Q Consensus 208 L~~L~l~~n~~-~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~ 277 (659)
|+.|++++|.+ ...+|..+. .+. +|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..++.
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 142 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE 142 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence 45555555555 234454443 333 78888888888888788776 8899999999999999877 777776
Q ss_pred C-----CCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccc--cCccC--cCCCCCCEEeCCCccccc--ccchh
Q 038552 278 L-----KNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGN--IPSSL--GNCQILRMFNASRNKLTG--ALPHQ 346 (659)
Q Consensus 278 ~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--~~~~~L~~L~l~~n~l~~--~~~~~ 346 (659)
+ ++|++|++++|++.+..+..++.+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++ .++..
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 6 8999999999999988888999999999999999998765 23344 889999999999999983 23323
Q ss_pred -hhhcccccceeccccccccCCCc-cccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCC
Q 038552 347 -LLSITTLTLSLDLSNNLLNGSLP-LQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLK 424 (659)
Q Consensus 347 -~~~~~~l~~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 424 (659)
+..++.++ .|++++|.+.+..| ..+..+++|++|+|++|.++ .+|..+. ++|++|++++|++++. |. +..++
T Consensus 223 ~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~ 296 (312)
T 1wwl_A 223 LAAARVQLQ-GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP 296 (312)
T ss_dssp HHHTTCCCS-EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC
T ss_pred HHhcCCCCC-EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCC
Confidence 34668888 89999999998775 45677899999999999998 6677666 8999999999999976 65 89999
Q ss_pred CCCEEECCCCccccc
Q 038552 425 SIKEFNVSSNNLSGL 439 (659)
Q Consensus 425 ~L~~L~l~~n~l~~~ 439 (659)
+|+.|++++|++++.
T Consensus 297 ~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 297 QVGNLSLKGNPFLDS 311 (312)
T ss_dssp EEEEEECTTCTTTCC
T ss_pred CCCEEeccCCCCCCC
Confidence 999999999999863
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-26 Score=231.15 Aligned_cols=267 Identities=18% Similarity=0.175 Sum_probs=189.4
Q ss_pred CCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEee
Q 038552 8 NLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVG 87 (659)
Q Consensus 8 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 87 (659)
+++..+++.+.+.......+..+++|++|++++|.+.+..|..|.++++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34555666666664445556677788888888888887777788888888888888888865544 8888888888888
Q ss_pred cCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccc
Q 038552 88 ENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGK 167 (659)
Q Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 167 (659)
+|.+++. ...++|++|++++|.++ .++.. .+++|+.|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CCccccc-----cCCCCcCEEECCCCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 8887732 23478888888888887 34332 467888888888888877777788888888888888888876
Q ss_pred ccccc-CCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCccccc
Q 038552 168 VSIDF-SSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGT 246 (659)
Q Consensus 168 ~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 246 (659)
.+..+ ..+++|++|++++|.++.. .....+++|++|++++|.++ +
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~l~~L~~L~Ls~N~l~-------------------------~- 205 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV--------KGQVVFAKLKTLDLSSNKLA-------------------------F- 205 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE--------ECCCCCTTCCEEECCSSCCC-------------------------E-
T ss_pred cHHHHhhccCcCCEEECCCCcCccc--------ccccccccCCEEECCCCcCC-------------------------c-
Confidence 66665 3678888888888877542 22223556666666666554 2
Q ss_pred CCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCC-CCCCccccCCCCCcEEEccCC-ccccccC
Q 038552 247 IPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQ-GSIPSSLGNLTKLVELPLSYN-NLQGNIP 320 (659)
Q Consensus 247 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~ 320 (659)
+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +.++..+..+++|+.++++++ .+.+..|
T Consensus 206 l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 2334566677777777777776 35666777777888888888777 566667777777777777744 3444433
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=4e-24 Score=230.01 Aligned_cols=207 Identities=31% Similarity=0.382 Sum_probs=125.8
Q ss_pred CCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEE
Q 038552 206 SSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLS 285 (659)
Q Consensus 206 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 285 (659)
++|++|++++|.+.+ +|. ...+|+.|++++|.+++ +|.. +++|++|++++|.+++ +|. .+++|+.|+
T Consensus 101 ~~L~~L~Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~ 167 (622)
T 3g06_A 101 PGLLELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLW 167 (622)
T ss_dssp TTCCEEEECSCCCCC-CCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred CCCCEEECcCCcCCC-CCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEE
Confidence 444455554444442 222 12245555555555553 3332 3667777777776664 232 345677777
Q ss_pred ccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceecccccccc
Q 038552 286 LYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLN 365 (659)
Q Consensus 286 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~ 365 (659)
+++|.+.+ +| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|.. ++.+. .|++++|.+.
T Consensus 168 L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~-~L~Ls~N~L~ 234 (622)
T 3g06_A 168 AYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLK-ELIVSGNRLT 234 (622)
T ss_dssp CCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCC-EEECCSSCCS
T ss_pred CCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCC-EEEccCCccC
Confidence 77777764 44 345677777777777763 3432 356777777777766 34432 24454 6677777666
Q ss_pred CCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhc
Q 038552 366 GSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLK 445 (659)
Q Consensus 366 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 445 (659)
+ +| ..+++|++|+|++|.++. +|. .+++|++|+|++|.++ .+|..+.++++|+.|++++|++++.+|..+.
T Consensus 235 ~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 235 S-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp C-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred c-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 4 33 445677778888877773 443 5567778888888777 5566777778888888888887777776665
Q ss_pred CC
Q 038552 446 NL 447 (659)
Q Consensus 446 ~l 447 (659)
.+
T Consensus 306 ~L 307 (622)
T 3g06_A 306 EI 307 (622)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=9.7e-25 Score=213.60 Aligned_cols=211 Identities=22% Similarity=0.257 Sum_probs=156.1
Q ss_pred CCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeC
Q 038552 255 VNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNA 334 (659)
Q Consensus 255 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 334 (659)
++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666666666666555556666667777777777666555556666777777777777766655566667777777777
Q ss_pred CCcccccccchhhhhcccccceeccccccccCC-CccccccCCCCceeecCCCcccccCCccccCCCCCC----eEECCC
Q 038552 335 SRNKLTGALPHQLLSITTLTLSLDLSNNLLNGS-LPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLE----YLNISR 409 (659)
Q Consensus 335 ~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~----~L~l~~ 409 (659)
++|.+.+..+..+..++.++ +|++++|.+.+. +|..+..+++|++|+|++|++++..+..+..+++|+ +|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLK-ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCC-EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCCC-EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 77776655554566666666 677777777653 577888888999999999998877777777777776 899999
Q ss_pred CCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC
Q 038552 410 NFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK 467 (659)
Q Consensus 410 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~ 467 (659)
|.+.+..+..+. ..+|+.|++++|.+++..+..+..+++|+.|++++|++.+.+|..
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 999866665554 458999999999998877777888999999999999999888754
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.6e-25 Score=232.26 Aligned_cols=222 Identities=22% Similarity=0.250 Sum_probs=194.8
Q ss_pred cCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEE
Q 038552 253 NLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMF 332 (659)
Q Consensus 253 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 332 (659)
.+++|+.|++++|.+++..|..|+.+++|++|+|++|.+.+..| ++.+++|++|++++|.+++.. ..++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 45589999999999999888999999999999999999987665 899999999999999998543 23899999
Q ss_pred eCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCcccc-CCCCCCeEECCCCC
Q 038552 333 NASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLS-ACVSLEYLNISRNF 411 (659)
Q Consensus 333 ~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~l~~n~ 411 (659)
++++|.+++..+.. ++.+. .|++++|.+.+..|..++.+++|++|+|++|.+++..|..+. .+++|++|+|++|.
T Consensus 105 ~L~~N~l~~~~~~~---l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCSR---GQGKK-NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEECC---CSSCE-EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCccc---cCCCC-EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999999766543 46676 899999999999899999999999999999999998888886 79999999999999
Q ss_pred CCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCcccC
Q 038552 412 FHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGI 488 (659)
Q Consensus 412 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 488 (659)
+++.. .+..+++|+.|++++|.+++..|. +..+++|+.|++++|.+++..+....++++..+++++|+..|+..
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence 99763 345699999999999999986554 889999999999999999755555667889999999999998654
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2e-23 Score=203.31 Aligned_cols=206 Identities=21% Similarity=0.239 Sum_probs=143.0
Q ss_pred cCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCC
Q 038552 257 LIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASR 336 (659)
Q Consensus 257 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 336 (659)
.+.++++++.++. +|..+. +++++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4455555555552 333222 4566666666666655555566666666666666666544444455666666666666
Q ss_pred cccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCC
Q 038552 337 NKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGII 416 (659)
Q Consensus 337 n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 416 (659)
|.+.+..+..+..++.++ .|++++|.+.+..+..+..+++|++|+|++|.+++..+..|..+++|++|++++|.+.+..
T Consensus 95 n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLA-ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCCC-EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 666544444445555665 6666666666666667788888888888888888776667888888999999998888777
Q ss_pred cccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552 417 PLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK 466 (659)
Q Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~ 466 (659)
+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 77788888999999999988877667788888899999998888877653
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2e-23 Score=204.24 Aligned_cols=207 Identities=19% Similarity=0.232 Sum_probs=168.1
Q ss_pred cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552 232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS 311 (659)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 311 (659)
+++.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 57777777777776666677788888888888888877767778888888888888888887777778888888888888
Q ss_pred CCccccccCccCcCCCCCCEEeCCCcccccc-cchhhhhcccccceeccccccccCCCccccccCCCCc----eeecCCC
Q 038552 312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGA-LPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLV----KLDISGN 386 (659)
Q Consensus 312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~n 386 (659)
+|.+.+..+..+..+++|++|++++|.+.+. +|..+..++.++ .|++++|.+.+..+..+..+++|+ +|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC-EEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC-EEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 8888866666788888888888888888753 578888888887 888888888877777777777777 8999999
Q ss_pred cccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccc
Q 038552 387 QFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLI 440 (659)
Q Consensus 387 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (659)
.+++..+..+.. .+|++|++++|.+++..+..+..+++|+.|++++|++.+..
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 999766655544 58999999999999877777899999999999999998653
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5.3e-23 Score=201.81 Aligned_cols=206 Identities=23% Similarity=0.264 Sum_probs=146.8
Q ss_pred cccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCC
Q 038552 251 IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILR 330 (659)
Q Consensus 251 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 330 (659)
++++++++.++++++.++. +|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 5566777777777777763 444332 577788888888776667777778888888888887775333 26677778
Q ss_pred EEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCC
Q 038552 331 MFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRN 410 (659)
Q Consensus 331 ~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 410 (659)
.|++++|.+. .+|..+..++.++ .|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~-~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALT-VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCC-EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCCC-EEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 8888877776 5666666666666 6777777777666666777777777777777777666666777777777777777
Q ss_pred CCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccC
Q 038552 411 FFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEV 464 (659)
Q Consensus 411 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~ 464 (659)
++.+..+..|..+++|+.|++++|.++ .+|..+...++|+.+++++|++.+.+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 777665556677777777777777776 45666666667777777777776654
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=8.3e-23 Score=200.40 Aligned_cols=206 Identities=25% Similarity=0.230 Sum_probs=182.0
Q ss_pred cccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccc
Q 038552 274 TIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTL 353 (659)
Q Consensus 274 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l 353 (659)
.++.++++++++++++.+. .+|..+. +.++.|++++|.+++..+..|..+++|+.|++++|.+++..+ . ..++.+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcC
Confidence 3677899999999999998 5665443 789999999999998888899999999999999999985433 2 678888
Q ss_pred cceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCC
Q 038552 354 TLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSS 433 (659)
Q Consensus 354 ~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 433 (659)
+ .|++++|.+. .+|..+..+++|++|+|++|++++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus 80 ~-~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 G-TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp C-EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred C-EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 8 9999999998 6788899999999999999999988888999999999999999999988888889999999999999
Q ss_pred CcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCcc
Q 038552 434 NNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCG 486 (659)
Q Consensus 434 n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~ 486 (659)
|.+++..+..+..+++|+.|++++|++....+.......++.+.+.+||+.|.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 99998777788999999999999999985444445556789999999999995
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.9e-22 Score=196.30 Aligned_cols=202 Identities=23% Similarity=0.248 Sum_probs=145.1
Q ss_pred CEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCC
Q 038552 234 TDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYN 313 (659)
Q Consensus 234 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 313 (659)
+.++++++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 19 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 19 NSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 34444444444 2333322 45666666666666555556666677777777777666555555666777777777777
Q ss_pred ccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCC
Q 038552 314 NLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIP 393 (659)
Q Consensus 314 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 393 (659)
.+.+..+..|..+++|++|++++|.+++..+..+..++.++ .|++++|.+.+..+..+..+++|++|+|++|.+++..+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT-YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC-EEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 76655555566677777777777777655555566667776 67777777776666668889999999999999998777
Q ss_pred ccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCccccc
Q 038552 394 VTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGL 439 (659)
Q Consensus 394 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (659)
..|..+++|++|++++|.+.+..+..+..+++|+.|++++|++...
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 7889999999999999999987777788999999999999998654
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.3e-23 Score=202.94 Aligned_cols=209 Identities=22% Similarity=0.225 Sum_probs=104.1
Q ss_pred cCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCE
Q 038552 28 GSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEW 107 (659)
Q Consensus 28 ~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 107 (659)
..+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+.++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 344455555555555442 2 2344555555555555554331 24455555555555555555444444555555555
Q ss_pred EeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCC
Q 038552 108 IYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNN 187 (659)
Q Consensus 108 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (659)
|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.
T Consensus 114 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 555555554 3333322245555555555555554444444555555555555555554444445555555555555555
Q ss_pred CCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCC
Q 038552 188 LGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLV 255 (659)
Q Consensus 188 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 255 (659)
+++. .+..+..+++|+.|++++|++.+..| .++.+++..|.++|.+|.+++.+.
T Consensus 193 l~~~------~~~~~~~l~~L~~L~l~~N~~~~~~~--------~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 193 LKSV------PDGVFDRLTSLQYIWLHDNPWDCTCP--------GIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CSCC------CTTTTTTCTTCCEEECCSSCBCCCTT--------TTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCcc------CHHHHhCCcCCCEEEccCCCccccCc--------HHHHHHHHHHhCCCcccCcccccC
Confidence 5431 12234445555555555555544332 344445555556666665555444
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6.5e-23 Score=199.75 Aligned_cols=205 Identities=22% Similarity=0.213 Sum_probs=156.3
Q ss_pred cccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCC
Q 038552 251 IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILR 330 (659)
Q Consensus 251 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 330 (659)
...+++|+.|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 45666777777777766532 2466677777777777777642 3567777777777777777766666677777777
Q ss_pred EEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCC
Q 038552 331 MFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRN 410 (659)
Q Consensus 331 ~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 410 (659)
+|++++|.+++..+..+..++.++ .|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLT-YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCC-EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 777777777765555566777776 7777777777666666788889999999999988777777888899999999999
Q ss_pred CCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC
Q 038552 411 FFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK 467 (659)
Q Consensus 411 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~ 467 (659)
.+.+..+..+..+++|+.|++++|++.+. ++.|+.++++.|.++|.+|..
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 99888877788899999999999988754 557888889999999888854
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=201.67 Aligned_cols=227 Identities=18% Similarity=0.173 Sum_probs=136.6
Q ss_pred CCCcEEEccCCccccccChhH---HhccccCCEEEcccCcccccCCccc--ccCCCcCeeecccccCCCCCC----cccc
Q 038552 206 SSLKVISLYANQFGGELPHSI---ANLSSTMTDFRIGANQISGTIPPGI--RNLVNLIALTMEINKLHGTIP----DTIG 276 (659)
Q Consensus 206 ~~L~~L~l~~n~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~~~ 276 (659)
..++.+.+..+.+.......+ ... .++++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 357777877776643211111 111 247777777777776666666 667777777777777765443 2334
Q ss_pred CCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccc--c--CccCcCCCCCCEEeCCCcccccccchhhhhccc
Q 038552 277 ELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGN--I--PSSLGNCQILRMFNASRNKLTGALPHQLLSITT 352 (659)
Q Consensus 277 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 352 (659)
.+++|++|++++|.+.+..+..++.+++|++|++++|.+.+. + +..+..+++|++|++++|+++ .++..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~------ 215 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGV------ 215 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHH------
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHH------
Confidence 566677777777776666666666666677777766665431 1 122345566666666666554 11110
Q ss_pred ccceeccccccccCCCcc-ccccCCCCceeecCCCcccccCCccccCC---CCCCeEECCCCCCCCCCcccccCCCCCCE
Q 038552 353 LTLSLDLSNNLLNGSLPL-QVGNLKNLVKLDISGNQFSGVIPVTLSAC---VSLEYLNISRNFFHGIIPLSLSSLKSIKE 428 (659)
Q Consensus 353 l~~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 428 (659)
+. .+..+++|++|+|++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.
T Consensus 216 ----------------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~ 276 (310)
T 4glp_A 216 ----------------CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRV 276 (310)
T ss_dssp ----------------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSC
T ss_pred ----------------HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCE
Confidence 11 13455667777777777766656555555 57777777777777 4455543 67777
Q ss_pred EECCCCcccccchhhhcCCCCCCeeeCcCCcCc
Q 038552 429 FNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE 461 (659)
Q Consensus 429 L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~ 461 (659)
|++++|++++. |. +..+++|+.|++++|+++
T Consensus 277 L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 277 LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred EECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 77777777754 22 456677777777777765
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=6.1e-24 Score=218.69 Aligned_cols=212 Identities=19% Similarity=0.260 Sum_probs=149.6
Q ss_pred cccCCCcCeeeccccc---CCCCCCccc-------cCCCCCcEEEccCCCCCC----CCCccccCCCCCcEEEccCCccc
Q 038552 251 IRNLVNLIALTMEINK---LHGTIPDTI-------GELKNLQQLSLYNNSLQG----SIPSSLGNLTKLVELPLSYNNLQ 316 (659)
Q Consensus 251 l~~l~~L~~L~l~~n~---l~~~~~~~~-------~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~ 316 (659)
+..+++|++|++++|. +++.+|..+ ..+++|++|+|++|.+.+ .++..+..+++|++|+|++|.++
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 4456667777776653 333444433 567788888888887776 35566777788888888888776
Q ss_pred cccCcc----CcCC---------CCCCEEeCCCcccc-cccc---hhhhhcccccceeccccccccC-----CCcccccc
Q 038552 317 GNIPSS----LGNC---------QILRMFNASRNKLT-GALP---HQLLSITTLTLSLDLSNNLLNG-----SLPLQVGN 374 (659)
Q Consensus 317 ~~~~~~----~~~~---------~~L~~L~l~~n~l~-~~~~---~~~~~~~~l~~~L~l~~n~l~~-----~~~~~l~~ 374 (659)
+..+.. +..+ ++|++|++++|+++ +.++ ..+..++.++ .|++++|.+.. ..+..+..
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~L~~n~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH-TVKMVQNGIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC-EEECCSSCCCHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC-EEECcCCCCCHhHHHHHHHHHhhc
Confidence 433322 3333 77888888888876 3344 3556677777 78888887762 23336778
Q ss_pred CCCCceeecCCCccc----ccCCccccCCCCCCeEECCCCCCCCC----Cccccc--CCCCCCEEECCCCcccc----cc
Q 038552 375 LKNLVKLDISGNQFS----GVIPVTLSACVSLEYLNISRNFFHGI----IPLSLS--SLKSIKEFNVSSNNLSG----LI 440 (659)
Q Consensus 375 l~~L~~L~L~~n~l~----~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~--~l~~L~~L~l~~n~l~~----~~ 440 (659)
+++|++|+|++|.++ +.+|..+..+++|++|+|++|.+.+. ++..+. .+++|+.|++++|.+++ .+
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 888888888888885 45677788888888888888888765 455553 38888888888888887 46
Q ss_pred hhhh-cCCCCCCeeeCcCCcCccc
Q 038552 441 PEFL-KNLSFMEFLDLSYNHFEGE 463 (659)
Q Consensus 441 ~~~l-~~l~~L~~l~l~~n~l~~~ 463 (659)
|..+ .++++|+.|++++|++.+.
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHhcCCCceEEEccCCcCCcc
Confidence 7666 6678888888888887653
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=194.93 Aligned_cols=231 Identities=14% Similarity=0.110 Sum_probs=166.5
Q ss_pred CCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhH--HhccccCCEEEcccCcccccCC----c
Q 038552 176 KNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSI--ANLSSTMTDFRIGANQISGTIP----P 249 (659)
Q Consensus 176 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~----~ 249 (659)
..++.+.+.++.++.... ........+++|++|++++|.+.+..|..+ ..+. +|+.|++++|.+++..+ .
T Consensus 64 ~~l~~l~l~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLL---VGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp CCCCEEEECSCCCBHHHH---HHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHH
T ss_pred cceeEEEEeCCcCCHHHH---HHHHHhcccCceeEEEeeCCEeccchhhhhhhccCC-CCCEEEeecccccchhhhhHHH
Confidence 457888888776643111 111112234679999999999998888877 5554 89999999999997655 3
Q ss_pred ccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCC--C--CccccCCCCCcEEEccCCccccccCc----
Q 038552 250 GIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGS--I--PSSLGNLTKLVELPLSYNNLQGNIPS---- 321 (659)
Q Consensus 250 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~---- 321 (659)
.+..+++|++|++++|.+.+..+..++.+++|++|++++|++.+. + +..++.+++|++|++++|.++. ++.
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~ 218 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAA 218 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHH
Confidence 445799999999999999988889999999999999999998642 1 2334789999999999999873 222
Q ss_pred cCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCC
Q 038552 322 SLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVS 401 (659)
Q Consensus 322 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 401 (659)
.+..+++|++|++++|.+++..|..+..+ ..+++|++|+|++|+++ .+|..+. ++
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~----------------------~~~~~L~~L~Ls~N~l~-~lp~~~~--~~ 273 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRC----------------------MWSSALNSLNLSFAGLE-QVPKGLP--AK 273 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSC----------------------CCCTTCCCEECCSSCCC-SCCSCCC--SC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhc----------------------cCcCcCCEEECCCCCCC-chhhhhc--CC
Confidence 24566777777777776664444333222 11257777777777777 4555553 67
Q ss_pred CCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccc
Q 038552 402 LEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSG 438 (659)
Q Consensus 402 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (659)
|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus 274 L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 274 LRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 88888888888754 32 5677888888888887764
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=2.7e-23 Score=211.51 Aligned_cols=231 Identities=19% Similarity=0.224 Sum_probs=144.0
Q ss_pred cCCEEEcccCcccccCC----cccccCC-CcCeeecccccCCCCCCccccCC-----CCCcEEEccCCCCCCCCCcc---
Q 038552 232 TMTDFRIGANQISGTIP----PGIRNLV-NLIALTMEINKLHGTIPDTIGEL-----KNLQQLSLYNNSLQGSIPSS--- 298 (659)
Q Consensus 232 ~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~--- 298 (659)
+++.|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+.+..+..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 35555555555444333 3445555 66666666666665555544443 66777777777766554443
Q ss_pred -ccCC-CCCcEEEccCCccccccCccC----cC-CCCCCEEeCCCccccccc----chhhhhcc-cccceeccccccccC
Q 038552 299 -LGNL-TKLVELPLSYNNLQGNIPSSL----GN-CQILRMFNASRNKLTGAL----PHQLLSIT-TLTLSLDLSNNLLNG 366 (659)
Q Consensus 299 -~~~l-~~L~~L~l~~n~l~~~~~~~~----~~-~~~L~~L~l~~n~l~~~~----~~~~~~~~-~l~~~L~l~~n~l~~ 366 (659)
+..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.++... +..+...+ .++ +|++++|.+++
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~-~L~Ls~n~l~~ 181 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN-SLNLRGNNLAS 181 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC-EEECTTSCGGG
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc-EeeecCCCCch
Confidence 2333 677777777777665443332 23 246777777777776433 23333444 565 77777777776
Q ss_pred CCccccc----cC-CCCceeecCCCccccc----CCccccC-CCCCCeEECCCCCCCCCCc----ccccCCCCCCEEECC
Q 038552 367 SLPLQVG----NL-KNLVKLDISGNQFSGV----IPVTLSA-CVSLEYLNISRNFFHGIIP----LSLSSLKSIKEFNVS 432 (659)
Q Consensus 367 ~~~~~l~----~l-~~L~~L~L~~n~l~~~----~~~~~~~-~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~ 432 (659)
..+..+. .+ ++|++|+|++|.+++. ++..+.. .++|++|+|++|.+.+..+ ..+..+++|+.|+++
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 6654433 34 5888888888888753 3344444 4588888888888876544 334677888899998
Q ss_pred CCcccccch-------hhhcCCCCCCeeeCcCCcCccc
Q 038552 433 SNNLSGLIP-------EFLKNLSFMEFLDLSYNHFEGE 463 (659)
Q Consensus 433 ~n~l~~~~~-------~~l~~l~~L~~l~l~~n~l~~~ 463 (659)
+|.+.+..+ ..+..+++|+.||+++|++...
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 888544332 3556777888888998887655
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.6e-21 Score=186.09 Aligned_cols=180 Identities=21% Similarity=0.270 Sum_probs=118.5
Q ss_pred CcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCC
Q 038552 256 NLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNAS 335 (659)
Q Consensus 256 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 335 (659)
..+.++++++.+. .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4556666666665 3343332 466666666666666666666666666666666666665555556666666666666
Q ss_pred CcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCC
Q 038552 336 RNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGI 415 (659)
Q Consensus 336 ~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 415 (659)
+|.++ +..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|.+.+.
T Consensus 92 ~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 92 NNQLA-------------------------SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp TSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccc-------------------------ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence 65555 33344556667777777777777766555667777777777777777766
Q ss_pred CcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCccc
Q 038552 416 IPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGE 463 (659)
Q Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~ 463 (659)
.+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 666677777777777777777766666677777777777777777665
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4.8e-23 Score=208.06 Aligned_cols=251 Identities=21% Similarity=0.255 Sum_probs=186.7
Q ss_pred CcEEEccCCccccccChhHHhc-cccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCC-CCccccCCCCCcEEE
Q 038552 208 LKVISLYANQFGGELPHSIANL-SSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT-IPDTIGELKNLQQLS 285 (659)
Q Consensus 208 L~~L~l~~n~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~ 285 (659)
++.++++++.+. +..+... ...++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455566555544 2333332 13677888888877766554 55788899999998888765 677788889999999
Q ss_pred ccCCCCCCCCCccccCCCCCcEEEccCC-cccc-ccCccCcCCCCCCEEeCCCc-ccccc-cchhhhhcc-cccceeccc
Q 038552 286 LYNNSLQGSIPSSLGNLTKLVELPLSYN-NLQG-NIPSSLGNCQILRMFNASRN-KLTGA-LPHQLLSIT-TLTLSLDLS 360 (659)
Q Consensus 286 l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~-~l~~~L~l~ 360 (659)
+++|.+.+..+..++.+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ .++ +|+++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~-~L~l~ 203 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT-QLNLS 203 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC-EEECC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC-EEEeC
Confidence 9999888777778888999999999998 5665 35666788889999999999 88754 567778888 887 89999
Q ss_pred cc--ccc-CCCccccccCCCCceeecCCCc-ccccCCccccCCCCCCeEECCCCC-CCCCCcccccCCCCCCEEECCCCc
Q 038552 361 NN--LLN-GSLPLQVGNLKNLVKLDISGNQ-FSGVIPVTLSACVSLEYLNISRNF-FHGIIPLSLSSLKSIKEFNVSSNN 435 (659)
Q Consensus 361 ~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 435 (659)
+| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 88 444 4556677889999999999998 777777788899999999999995 33222235788999999999998
Q ss_pred ccccchhhhcCC-CCCCeeeCcCCcCcccCCCC
Q 038552 436 LSGLIPEFLKNL-SFMEFLDLSYNHFEGEVPKK 467 (659)
Q Consensus 436 l~~~~~~~l~~l-~~L~~l~l~~n~l~~~~p~~ 467 (659)
++.. .+..+ ..+..|++++|.+++..|..
T Consensus 283 i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 283 VPDG---TLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp SCTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred cCHH---HHHHHHhhCcceEEecccCccccCCc
Confidence 4432 23222 23566778999998877743
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=5e-23 Score=211.86 Aligned_cols=251 Identities=16% Similarity=0.208 Sum_probs=157.3
Q ss_pred cCchhhcCCCCCcEEeccccCCCcccc----ccccCCCCCcEEEccCCc---cCccccccc-------CCCCCCCEEEee
Q 038552 22 QIPEEIGSLLNLQTLAIDFNYLTGQLP----DFVGNLSALKVFYIIGNS---LGGKIPTTL-------GLLRNLVDLNVG 87 (659)
Q Consensus 22 ~~~~~~~~~~~L~~L~ls~~~~~~~~~----~~~~~l~~L~~L~l~~n~---l~~~~~~~~-------~~l~~L~~L~l~ 87 (659)
.++..+..+++|++|++++|.+.+..+ ..+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 456667778888888888888876533 346678888888888764 334445444 678888888888
Q ss_pred cCcCCc----cCcccccCCCCCCEEeccCccccccChHHHhc---CC---------CCCcEEEccCCcCC-cccC---hh
Q 038552 88 ENRFSG----MFPRSICNISSLEWIYLPFNRFSGSLPLDIAV---NL---------PNLKALAIGGNNFF-GSIP---NS 147 (659)
Q Consensus 88 ~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~l---------~~L~~L~l~~n~~~-~~~~---~~ 147 (659)
+|.+++ .+|..+..+++|++|++++|.+++..+..+.. .+ ++|++|++++|+++ ..++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 888876 36667778888888888888776333333321 22 67777777777776 3333 34
Q ss_pred ccCCCCCCEEEccCCCCcc-----ccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCcccccc
Q 038552 148 LSNASNLEILDLTSNQLKG-----KVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGEL 222 (659)
Q Consensus 148 l~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 222 (659)
+..+++|++|++++|.++. ..+..+..+++|++|+|++|.++..+. ..++..+..+++|++|++++|.+++..
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~--~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS--SALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH--HHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH--HHHHHHHccCCCcCEEECCCCCCchhh
Confidence 5667777777777777662 233356667777777777776642100 034445556666666666666655331
Q ss_pred ChhHHhccccCCEEEcccCcccccCCccc--ccCCCcCeeecccccCCC----CCCccc-cCCCCCcEEEccCCCCCCCC
Q 038552 223 PHSIANLSSTMTDFRIGANQISGTIPPGI--RNLVNLIALTMEINKLHG----TIPDTI-GELKNLQQLSLYNNSLQGSI 295 (659)
Q Consensus 223 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~----~~~~~~-~~~~~L~~L~l~~n~l~~~~ 295 (659)
... ++..+ +.+++|+.|++++|.+++ .+|..+ ..+++|++|++++|++.+..
T Consensus 261 ~~~---------------------l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 261 AAA---------------------VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHH---------------------HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHH---------------------HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 111 22233 225666666776666665 355555 44677777777777776554
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.3e-22 Score=206.55 Aligned_cols=105 Identities=21% Similarity=0.231 Sum_probs=60.8
Q ss_pred EEccCCcccccCchhhcCCCCCcEEeccccCCCcccc----ccccCCC-CCcEEEccCCccCcccccccCCC-----CCC
Q 038552 12 LRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLP----DFVGNLS-ALKVFYIIGNSLGGKIPTTLGLL-----RNL 81 (659)
Q Consensus 12 L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L 81 (659)
++++.|.+++.+|..+....+|++|++++|.+.+..+ .++..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666666655555556666666666665444 5555666 66666666666655545444443 566
Q ss_pred CEEEeecCcCCccCccccc----CC-CCCCEEeccCcccc
Q 038552 82 VDLNVGENRFSGMFPRSIC----NI-SSLEWIYLPFNRFS 116 (659)
Q Consensus 82 ~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~~~ 116 (659)
++|++++|.+++..+..+. .+ ++|++|++++|.++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 6666666666544444322 22 55666666665555
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=3.8e-22 Score=201.39 Aligned_cols=254 Identities=17% Similarity=0.179 Sum_probs=136.7
Q ss_pred CCEEEccCCcccccCchhhcCC--CCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcc-cccccCCCCCCCEEE
Q 038552 9 LIELRVSKNKLEGQIPEEIGSL--LNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGK-IPTTLGLLRNLVDLN 85 (659)
Q Consensus 9 L~~L~ls~n~~~~~~~~~~~~~--~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 85 (659)
+++++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 556666666554 3444444 5666666666666544443 34566666666666665443 555556666666666
Q ss_pred eecCcCCccCcccccCCCCCCEEeccCc-ccccc-ChHHHhcCCCCCcEEEccCC-cCCcc-cChhccCCC-CCCEEEcc
Q 038552 86 VGENRFSGMFPRSICNISSLEWIYLPFN-RFSGS-LPLDIAVNLPNLKALAIGGN-NFFGS-IPNSLSNAS-NLEILDLT 160 (659)
Q Consensus 86 l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~l~ 160 (659)
+++|.+++..+..++.+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 6666665555556666666666666666 44432 333232 4566666666666 55432 344455555 66666666
Q ss_pred CC--CCc-cccccccCCCCCCCEEECCCCC-CCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEE
Q 038552 161 SN--QLK-GKVSIDFSSLKNLSWLNLEQNN-LGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDF 236 (659)
Q Consensus 161 ~n--~l~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 236 (659)
+| .++ +.++..+..+++|+.|++++|. ++. ..+..+..+++|+.|++++|.
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~------~~~~~l~~l~~L~~L~l~~~~------------------- 258 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN------DCFQEFFQLNYLQHLSLSRCY------------------- 258 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG------GGGGGGGGCTTCCEEECTTCT-------------------
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH------HHHHHHhCCCCCCEeeCCCCC-------------------
Confidence 55 333 2333344455555555555554 332 223334444555555555442
Q ss_pred EcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCC-CCCcEEEccCCCCCCCCCccccC
Q 038552 237 RIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGEL-KNLQQLSLYNNSLQGSIPSSLGN 301 (659)
Q Consensus 237 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~ 301 (659)
.+.......+..+++|+.|++++| ++.. .+..+ .+++.|++++|.+++..|..++.
T Consensus 259 -----~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 259 -----DIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp -----TCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred -----CCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 111111124566777777777777 3322 22222 23555667788888777766554
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.3e-21 Score=186.90 Aligned_cols=196 Identities=16% Similarity=0.206 Sum_probs=108.8
Q ss_pred CcCeeecccccCCCCCCccccCCCCCcEEEccCCC-CCCCCCccccCCCCCcEEEccC-CccccccCccCcCCCCCCEEe
Q 038552 256 NLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNS-LQGSIPSSLGNLTKLVELPLSY-NNLQGNIPSSLGNCQILRMFN 333 (659)
Q Consensus 256 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~ 333 (659)
+|+.|++++|.+++..+..|..+++|++|++++|. +.+..+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55566666666555544455556666666666664 5444444555556666666655 555544444555555555555
Q ss_pred CCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCc---eeecCCC-cccccCCccccCCCCCC-eEECC
Q 038552 334 ASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLV---KLDISGN-QFSGVIPVTLSACVSLE-YLNIS 408 (659)
Q Consensus 334 l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~L~-~L~l~ 408 (659)
+++|.+++ +| . +..+++|+ +|++++| .+++..+..|.++++|+ +|+++
T Consensus 112 l~~n~l~~-lp-------------------------~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 112 IFNTGLKM-FP-------------------------D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEECCCS-CC-------------------------C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred CCCCCCcc-cc-------------------------c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 55555542 33 2 44444444 6666666 66555555566666666 66666
Q ss_pred CCCCCCCCcccccCCCCCCEEECCCCc-ccccchhhhcCC-CCCCeeeCcCCcCcccCCCCCccCCcccccccCC
Q 038552 409 RNFFHGIIPLSLSSLKSIKEFNVSSNN-LSGLIPEFLKNL-SFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN 481 (659)
Q Consensus 409 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l-~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n 481 (659)
+|.+....+..+.. ++|+.|++++|+ +++..+..+..+ ++|+.|++++|++++ +|.. .+..++.+.+.++
T Consensus 165 ~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 165 NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNT 236 (239)
T ss_dssp SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC
T ss_pred CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCc
Confidence 66666333333333 566666666663 655545556666 666666666666653 3322 4555555555544
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5.7e-21 Score=189.34 Aligned_cols=194 Identities=28% Similarity=0.389 Sum_probs=118.9
Q ss_pred ccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCE
Q 038552 252 RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRM 331 (659)
Q Consensus 252 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 331 (659)
..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ + ..+..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCE
Confidence 345555566666555543 22 35555666666666666553322 5556666666666666553 2 24555666666
Q ss_pred EeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCC
Q 038552 332 FNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNF 411 (659)
Q Consensus 332 L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 411 (659)
|++++|.+++ ++ .+..++.++ .|++++|.+.+..+ +..+++|++|+|++|.+++..+ +..+++|++|++++|.
T Consensus 112 L~l~~n~l~~-~~-~l~~l~~L~-~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 112 LDLTSTQITD-VT-PLAGLSNLQ-VLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EECTTSCCCC-CG-GGTTCTTCC-EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCCCCC-ch-hhcCCCCCC-EEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 6666666653 22 255555665 56666666654332 6667777777777777765433 6777777777777777
Q ss_pred CCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcc
Q 038552 412 FHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEG 462 (659)
Q Consensus 412 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~ 462 (659)
+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 765443 6677777777777777776542 6677777777777777754
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.1e-20 Score=181.58 Aligned_cols=178 Identities=21% Similarity=0.259 Sum_probs=119.2
Q ss_pred CCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEee
Q 038552 8 NLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVG 87 (659)
Q Consensus 8 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 87 (659)
..++++++++.++ .+|..+. ++++.|++++|.+.+..+.+|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4566777777776 5565554 467777777777776666667777777777777777766666667777777777777
Q ss_pred cCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccc
Q 038552 88 ENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGK 167 (659)
Q Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 167 (659)
+|.+++..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|++++..+..+..+++|++|++++|.+++.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 77777555566677777777777777776 45544444566677777776666655555566666666666666666655
Q ss_pred cccccCCCCCCCEEECCCCCCC
Q 038552 168 VSIDFSSLKNLSWLNLEQNNLG 189 (659)
Q Consensus 168 ~~~~l~~l~~L~~L~l~~n~l~ 189 (659)
.+..|..+++|+.|++++|.+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBC
T ss_pred CHHHHhCCCCCCEEEeeCCcee
Confidence 5555666666666666666554
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5e-21 Score=182.70 Aligned_cols=196 Identities=15% Similarity=0.179 Sum_probs=99.3
Q ss_pred CCcEEeccccCCCccccccccCCCCCcEEEccCCc-cCcccccccCCCCCCCEEEeec-CcCCccCcccccCCCCCCEEe
Q 038552 32 NLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS-LGGKIPTTLGLLRNLVDLNVGE-NRFSGMFPRSICNISSLEWIY 109 (659)
Q Consensus 32 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 109 (659)
+|++|++++|.+++..+.+|.++++|++|++++|. +....+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55555555555554444455555555555555554 4433334555555555555555 555544444555555555555
Q ss_pred ccCccccccChHHHhcCCCCCc---EEEccCC-cCCcccChhccCCCCCC-EEEccCCCCccccccccCCCCCCCEEECC
Q 038552 110 LPFNRFSGSLPLDIAVNLPNLK---ALAIGGN-NFFGSIPNSLSNASNLE-ILDLTSNQLKGKVSIDFSSLKNLSWLNLE 184 (659)
Q Consensus 110 l~~n~~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (659)
+++|.++ .+|. + ..+++|+ .|++++| .+++..+..+.++++|+ +|++++|.++...+..|.. ++|+.|+++
T Consensus 112 l~~n~l~-~lp~-~-~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLK-MFPD-L-TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCC-SCCC-C-TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred CCCCCCc-cccc-c-ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 5555555 3443 2 2445555 5555555 55544444455555555 5555555555333333333 555555555
Q ss_pred CCC-CCCCCCCCccccccccCC-CCCcEEEccCCccccccChhHHhccccCCEEEcccC
Q 038552 185 QNN-LGMGTANDLDFVTFLTNC-SSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN 241 (659)
Q Consensus 185 ~n~-l~~~~~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 241 (659)
+|. ++... ...+..+ ++|+.|++++|.+++ +|.. .+ .+++.|++.++
T Consensus 188 ~n~~l~~i~------~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~-~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVID------KDAFGGVYSGPSLLDVSQTSVTA-LPSK--GL-EHLKELIARNT 236 (239)
T ss_dssp TCTTCCEEC------TTTTTTCSBCCSEEECTTCCCCC-CCCT--TC-TTCSEEECTTC
T ss_pred CCCCcccCC------HHHhhccccCCcEEECCCCcccc-CChh--Hh-ccCceeeccCc
Confidence 552 44311 1233444 555566665555552 3322 11 24555555443
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=6.4e-20 Score=181.78 Aligned_cols=191 Identities=21% Similarity=0.382 Sum_probs=158.3
Q ss_pred cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552 232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS 311 (659)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 311 (659)
+++.|++++|.++. ++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+. + .+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECC
Confidence 67777777777764 34 57888899999999998886544 88899999999999998853 3 58889999999999
Q ss_pred CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccccc
Q 038552 312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV 391 (659)
Q Consensus 312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 391 (659)
+|.+++ ++ .+..+++|+.|++++|.+++..+ +..++.++ .|++++|.+.+..+ +..+++|++|++++|.+++.
T Consensus 116 ~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~-~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 116 STQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQ-YLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCC-EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCcc-EEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 999885 33 38889999999999999885433 77888888 89999999986443 88999999999999999865
Q ss_pred CCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCccccc
Q 038552 392 IPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGL 439 (659)
Q Consensus 392 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (659)
.+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|++++.
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 44 8899999999999999997653 88999999999999999864
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=2.5e-19 Score=166.86 Aligned_cols=156 Identities=21% Similarity=0.195 Sum_probs=93.0
Q ss_pred CCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceec
Q 038552 279 KNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLD 358 (659)
Q Consensus 279 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~ 358 (659)
++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------ 89 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ------------------ 89 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC------------------
Confidence 35555666666555444444555555666666555555443444455555555555555444
Q ss_pred cccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccc
Q 038552 359 LSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSG 438 (659)
Q Consensus 359 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (659)
+..+..+..+++|++|+|++|++++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 90 -------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 90 -------SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp -------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred -------ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 2333334556666666666666665555556666677777777776665555556667777777777776553
Q ss_pred cchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552 439 LIPEFLKNLSFMEFLDLSYNHFEGEVPK 466 (659)
Q Consensus 439 ~~~~~l~~l~~L~~l~l~~n~l~~~~p~ 466 (659)
.++.|+.|+++.|.++|.+|.
T Consensus 163 -------~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 163 -------TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp -------CTTTTHHHHHHHHHCTTTBBC
T ss_pred -------CCCCHHHHHHHHHhCCceeec
Confidence 345667777777777776664
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.6e-19 Score=165.79 Aligned_cols=181 Identities=24% Similarity=0.240 Sum_probs=123.3
Q ss_pred CEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCC
Q 038552 234 TDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYN 313 (659)
Q Consensus 234 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 313 (659)
+.++.+++.++ .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34445555444 234332 357888888888888766677788888888888888888766667788888999999888
Q ss_pred ccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCC
Q 038552 314 NLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIP 393 (659)
Q Consensus 314 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 393 (659)
.+++..+..+..+++|++|++++|.+++..+ ..+..+++|++|+|++|++++..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------------------~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPD-------------------------GVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------------------TTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCH-------------------------hHhccCCcCCEEECCCCccceeCH
Confidence 8886666667888888888887777663222 234455666666666666665555
Q ss_pred ccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCC
Q 038552 394 VTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSF 449 (659)
Q Consensus 394 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 449 (659)
..+..+++|++|++++|.+.+ .+++|+.|+++.|.++|.+|..++.++.
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 556666666667766665543 3456667777777777777766665543
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=5.4e-19 Score=178.76 Aligned_cols=104 Identities=14% Similarity=0.119 Sum_probs=52.3
Q ss_pred cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCC-ccccCCCCCcE-EEccCCCCCCCCCccccCCCCCcEEE
Q 038552 232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIP-DTIGELKNLQQ-LSLYNNSLQGSIPSSLGNLTKLVELP 309 (659)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~ 309 (659)
++++|++++|.++...+..|.++++|++|+|++|.+.+.++ ..|.+++++.+ +.+.+|++....|..|..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 45555555555553333345555555555555555544333 34455555443 33444555544455555555555555
Q ss_pred ccCCccccccCccCcCCCCCCEEeCC
Q 038552 310 LSYNNLQGNIPSSLGNCQILRMFNAS 335 (659)
Q Consensus 310 l~~n~l~~~~~~~~~~~~~L~~L~l~ 335 (659)
+++|.+....+..+.....+..+++.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred ccccccccCCchhhcccchhhhhhhc
Confidence 55555554333334444444444443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=4.2e-19 Score=179.54 Aligned_cols=244 Identities=17% Similarity=0.138 Sum_probs=186.4
Q ss_pred CEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCC-ccccCCCCCcE-EEcc
Q 038552 234 TDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP-SSLGNLTKLVE-LPLS 311 (659)
Q Consensus 234 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l~ 311 (659)
+.++.+++.++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+| ..|.+++++.+ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34566666666 566655 3689999999999997666789999999999999999876555 56889998876 5667
Q ss_pred CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceecccc-ccccCCCccccccCC-CCceeecCCCccc
Q 038552 312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSN-NLLNGSLPLQVGNLK-NLVKLDISGNQFS 389 (659)
Q Consensus 312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~L~~n~l~ 389 (659)
.|++....|..|..+++|++|++++|.+....+..+.....+. .+++.+ +.+....+..+..+. .++.|+|++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~-~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV-LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCE-EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhh-hhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 7899987788999999999999999999866666666666666 788865 556655555666664 6899999999998
Q ss_pred ccCCccccCCCCCCeEECCC-CCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCC
Q 038552 390 GVIPVTLSACVSLEYLNISR-NFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKG 468 (659)
Q Consensus 390 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~ 468 (659)
.+.+..| ..++|++|++++ |.+....+..|.++++|+.|++++|+++...+..+ .+|+.|.+.++.-...+|...
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTT
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCch
Confidence 6544444 557899999986 56665555678999999999999999986654444 456666666665556778777
Q ss_pred ccCCcccccccCCCCCcc
Q 038552 469 VFSNKTKISLQGNVKLCG 486 (659)
Q Consensus 469 ~~~~~~~~~~~~n~~lc~ 486 (659)
.+.+++.+.+. +++.|.
T Consensus 244 ~l~~L~~l~l~-~~~~c~ 260 (350)
T 4ay9_X 244 KLVALMEASLT-YPSHCC 260 (350)
T ss_dssp TCCSCCEEECS-CHHHHH
T ss_pred hCcChhhCcCC-CCcccc
Confidence 78888888875 555553
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=8.7e-19 Score=186.11 Aligned_cols=187 Identities=27% Similarity=0.371 Sum_probs=121.0
Q ss_pred cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552 232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS 311 (659)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 311 (659)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67777777777765 55544 266777777777776 444 346777777777777775 555 444 77777777
Q ss_pred CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccccc
Q 038552 312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV 391 (659)
Q Consensus 312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 391 (659)
+|.+++ +|. .+++|+.|++++|.+++ +|. .++.+. .|++++|.+++ +|. +. ++|++|+|++|.++ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~-~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLE-VLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCC-EEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcC-EEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 777775 554 56777777777777764 454 345555 67777777765 444 44 67777777777776 4
Q ss_pred CCccccCCCCC-------CeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCC
Q 038552 392 IPVTLSACVSL-------EYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNL 447 (659)
Q Consensus 392 ~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 447 (659)
+|. +.. +| ++|+|++|.++ .+|..+..+++|+.|++++|++++.+|..+..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 444 443 55 77777777776 455556667777777777777777666665543
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=8.1e-19 Score=186.34 Aligned_cols=181 Identities=27% Similarity=0.347 Sum_probs=112.1
Q ss_pred CcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCC
Q 038552 256 NLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNAS 335 (659)
Q Consensus 256 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 335 (659)
+++.|++++|.+++ +|..+ +++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 66777777776665 44433 256777777777766 444 345677777777777664 555 443 67777777
Q ss_pred CcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCC
Q 038552 336 RNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGI 415 (659)
Q Consensus 336 ~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 415 (659)
+|.+++ +|. .++.+. .|++++|.+++ +|. .+++|++|+|++|++++ +|. |. ++|++|+|++|.++ .
T Consensus 129 ~N~l~~-lp~---~l~~L~-~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLE-YINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCC-EEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCcccc-EEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 777664 444 455565 67777777664 443 45667777777777765 444 44 66777777777766 4
Q ss_pred CcccccCCCCC-------CEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCC
Q 038552 416 IPLSLSSLKSI-------KEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVP 465 (659)
Q Consensus 416 ~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p 465 (659)
+|. +.. +| +.|++++|.++. +|..+..+++|+.|++++|++++.+|
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 444 433 55 777777777763 45555557777777777777766544
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=168.34 Aligned_cols=157 Identities=20% Similarity=0.197 Sum_probs=108.3
Q ss_pred cEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccC-ccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccc
Q 038552 282 QQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIP-SSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS 360 (659)
Q Consensus 282 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~ 360 (659)
+.+++++|.+. .+|..+ .+.+++|++++|.+++..+ ..|..+++|+.|++++|.++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-------------------- 70 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-------------------- 70 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC--------------------
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC--------------------
Confidence 46777777766 344433 2345667777776665433 33556666666666665555
Q ss_pred cccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccc
Q 038552 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLI 440 (659)
Q Consensus 361 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (659)
+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+.+..|..|..+++|+.|++++|.+++..
T Consensus 71 -----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 71 -----DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp -----EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred -----EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 334445666777777777777777766667777777788888888777777777777788888888888887777
Q ss_pred hhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552 441 PEFLKNLSFMEFLDLSYNHFEGEVPK 466 (659)
Q Consensus 441 ~~~l~~l~~L~~l~l~~n~l~~~~p~ 466 (659)
|..+..+++|+.|++++|++.+.++.
T Consensus 146 ~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred HHHhcCCCCCCEEEecCcCCcCCCch
Confidence 77777788888888888888776653
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=3e-19 Score=167.43 Aligned_cols=156 Identities=19% Similarity=0.274 Sum_probs=109.5
Q ss_pred cEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceecccc
Q 038552 282 QQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSN 361 (659)
Q Consensus 282 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~ 361 (659)
+.++.+++.+. .+|..+. +.|++|++++|.+.+..+..|..+++|+.|++++|.+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-------------------- 70 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-------------------- 70 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--------------------
Confidence 46777777776 4454332 567777777777776555566777777766666666653
Q ss_pred ccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccch
Q 038552 362 NLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIP 441 (659)
Q Consensus 362 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 441 (659)
..|..|.++++|++|+|++|.++...+..|..+++|++|+|++|.+.+..|..|..+++|+.|++++|.+++..+
T Consensus 71 -----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 71 -----LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp -----ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred -----cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 344556666777777777777776555566777777777777777777777777777777888888877777766
Q ss_pred hhhcCCCCCCeeeCcCCcCcccCC
Q 038552 442 EFLKNLSFMEFLDLSYNHFEGEVP 465 (659)
Q Consensus 442 ~~l~~l~~L~~l~l~~n~l~~~~p 465 (659)
..+..+++|+.|++++|++.+.+.
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEECSGG
T ss_pred HHHhCCCCCCEEEeCCCCcCCCCc
Confidence 677777778888888887776554
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.3e-18 Score=176.55 Aligned_cols=180 Identities=23% Similarity=0.174 Sum_probs=115.6
Q ss_pred CeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCcccc-CCCCCcEEEccCCccccccCccCcCCCCCCEEeCCC
Q 038552 258 IALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG-NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASR 336 (659)
Q Consensus 258 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 336 (659)
+.++++++.+.. +|..+ .+.++.|+|++|.+.+..+..+. .+++|++|+|++|.+++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 345555555542 33322 13355555555555544444444 555555555555555544444455555555555555
Q ss_pred cccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCC
Q 038552 337 NKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGII 416 (659)
Q Consensus 337 n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 416 (659)
| .+.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+.+..
T Consensus 98 N-------------------------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 98 N-------------------------HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp S-------------------------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred C-------------------------cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 4 444444456677788888888888888777778888888888888888888655
Q ss_pred cccc---cCCCCCCEEECCCCcccccchhhhcCCCC--CCeeeCcCCcCcccCC
Q 038552 417 PLSL---SSLKSIKEFNVSSNNLSGLIPEFLKNLSF--MEFLDLSYNHFEGEVP 465 (659)
Q Consensus 417 ~~~~---~~l~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~l~l~~n~l~~~~p 465 (659)
+..| ..+++|+.|+|++|.+++..+..+..++. ++.|++++|++.+.+.
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 5555 56888888888888888776677777776 4788888888887654
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=3.6e-18 Score=167.53 Aligned_cols=172 Identities=24% Similarity=0.329 Sum_probs=98.4
Q ss_pred cccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCC
Q 038552 251 IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILR 330 (659)
Q Consensus 251 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 330 (659)
+..+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 34566667777776666543 2 35666667777777666664333 6666666666666666653 22 356666666
Q ss_pred EEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCC
Q 038552 331 MFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRN 410 (659)
Q Consensus 331 ~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 410 (659)
.|++++|.+.+. ..+..+++|++|++++|++++. ..+..+++|++|++++|
T Consensus 116 ~L~L~~n~i~~~---------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 116 SLSLEHNGISDI---------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp EEECTTSCCCCC---------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred EEECCCCcCCCC---------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC
Confidence 666666665531 2344455555555555555543 34555555666666666
Q ss_pred CCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCc
Q 038552 411 FFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE 461 (659)
Q Consensus 411 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~ 461 (659)
.+.+..+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 167 QISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred ccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 5554433 55556666666666655543 2 2555556666666666554
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=3.2e-18 Score=167.90 Aligned_cols=169 Identities=27% Similarity=0.383 Sum_probs=137.1
Q ss_pred cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552 232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS 311 (659)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 311 (659)
.++.|++++|.+... + .+..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+ ++ .+..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 799999999999854 3 58899999999999999987654 8999999999999999985 33 48999999999999
Q ss_pred CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccccc
Q 038552 312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV 391 (659)
Q Consensus 312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 391 (659)
+|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|++|+|++|++++.
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~---------------------------~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI---------------------------TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC---------------------------GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcc---------------------------hhhccCCCCCEEEccCCccccc
Confidence 9999853 4688889999998888877631 2355667788888888877765
Q ss_pred CCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCccccc
Q 038552 392 IPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGL 439 (659)
Q Consensus 392 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (659)
.+ +..+++|++|++++|.+++. + .+..+++|+.|++++|+++..
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred hh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 44 77788888888888888753 3 477888888888888887653
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=9.6e-18 Score=158.30 Aligned_cols=156 Identities=19% Similarity=0.185 Sum_probs=113.0
Q ss_pred CcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccc
Q 038552 281 LQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS 360 (659)
Q Consensus 281 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~ 360 (659)
-+.++.+++.+. .+|..+ .++|++|++++|.+++..|..|..+++|+.|++++|.+.
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-------------------- 77 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-------------------- 77 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------------
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC--------------------
Confidence 456777777766 455433 267777777777777666666777777777666666654
Q ss_pred cccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccc
Q 038552 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLI 440 (659)
Q Consensus 361 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (659)
...+..+..+++|++|+|++|++++..+..|..+++|++|+|++|.+. .+|..+..+++|+.|++++|.+++..
T Consensus 78 -----~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 78 -----ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp -----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred -----CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC
Confidence 233344566777888888888887666666778888888888888887 56677788888888888888888776
Q ss_pred hhhhcCCCCCCeeeCcCCcCcccCC
Q 038552 441 PEFLKNLSFMEFLDLSYNHFEGEVP 465 (659)
Q Consensus 441 ~~~l~~l~~L~~l~l~~n~l~~~~p 465 (659)
+..+..+++|+.|++++|++.+.++
T Consensus 152 ~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 152 HGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred HHHHhCCCCCCEEEeeCCCccCCcc
Confidence 6777788888888888888887665
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=155.79 Aligned_cols=156 Identities=18% Similarity=0.203 Sum_probs=128.5
Q ss_pred CeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCC-ccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCC
Q 038552 258 IALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP-SSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASR 336 (659)
Q Consensus 258 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 336 (659)
+.+++++|.++. +|..+ ...+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 589999999984 56544 3567899999999997754 4589999999999999999987777899999888888887
Q ss_pred cccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCC
Q 038552 337 NKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGII 416 (659)
Q Consensus 337 n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 416 (659)
|.+++ ..+..+..+++|++|+|++|++++..|..|..+++|++|+|++|.+++..
T Consensus 91 N~l~~-------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 91 NRLEN-------------------------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp SCCCC-------------------------CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred CccCc-------------------------cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 77763 33445667788888888888888887888888888999999999888888
Q ss_pred cccccCCCCCCEEECCCCcccccch
Q 038552 417 PLSLSSLKSIKEFNVSSNNLSGLIP 441 (659)
Q Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~ 441 (659)
|..|..+++|+.|++++|++.+..+
T Consensus 146 ~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTTTTTCTTCCEEECCSCCEECSGG
T ss_pred HHHhcCCCCCCEEEecCcCCcCCCc
Confidence 8888889999999999998876543
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=2.8e-18 Score=184.49 Aligned_cols=188 Identities=23% Similarity=0.335 Sum_probs=136.5
Q ss_pred EEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCc
Q 038552 235 DFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNN 314 (659)
Q Consensus 235 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 314 (659)
.+.+..+.+.... .+..++.|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.
T Consensus 25 ~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 25 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 3445555555332 256788888999988888743 3 57888999999999998886544 7888899999999988
Q ss_pred cccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCc
Q 038552 315 LQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPV 394 (659)
Q Consensus 315 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 394 (659)
+.+ +| .+..+++|+.|++++|.+.+ + ..+..++.|+ .|+|++|.+.+. ..+..+++|+.|+|++|.+.+..|
T Consensus 99 l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~-~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 99 IKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLE-SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp CCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCS-EEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccC-EEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence 874 33 68888888888888888874 2 3466677776 777777777654 466777777777777777776554
Q ss_pred cccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCccccc
Q 038552 395 TLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGL 439 (659)
Q Consensus 395 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (659)
+..+++|++|+|++|.+.+. + .+..+++|+.|+|++|++++.
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred -hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 67777777777777777653 2 567777777777777777654
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.7e-17 Score=155.47 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=127.4
Q ss_pred CeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCc
Q 038552 258 IALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRN 337 (659)
Q Consensus 258 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 337 (659)
+.++++++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57888888887 4555443 78999999999999888888999999999999999999888999999999999998888
Q ss_pred ccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCc
Q 038552 338 KLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIP 417 (659)
Q Consensus 338 ~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 417 (659)
.++. + .+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|.+.+..+
T Consensus 91 ~l~~-l------------------------~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 91 KITE-L------------------------PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp CCCC-C------------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCc-c------------------------CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 8762 2 22335667788888888888887777888888888888888888887777
Q ss_pred ccccCCCCCCEEECCCCccccc
Q 038552 418 LSLSSLKSIKEFNVSSNNLSGL 439 (659)
Q Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~ 439 (659)
..|..+++|+.|++++|++...
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEECS
T ss_pred HHHhCCCCCCEEEeCCCCcCCC
Confidence 7788888888888888888643
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.3e-17 Score=179.24 Aligned_cols=167 Identities=28% Similarity=0.384 Sum_probs=77.0
Q ss_pred cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552 232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS 311 (659)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 311 (659)
.|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|+
T Consensus 44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence 44444555444442 12 34444555555555554443322 4445555555555554442 22 34444555555555
Q ss_pred CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccccc
Q 038552 312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV 391 (659)
Q Consensus 312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 391 (659)
+|.+.+ + ..+..+++|+.|++++|.+.+. ..+..++.|+ .|+|++|.+.+..| +..+++|+.|+|++|++++.
T Consensus 118 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~-~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 118 HNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD-TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp TSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCS-EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCC-EEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 554442 1 2344445555555555544432 3344444444 45555555544333 44445555555555554432
Q ss_pred CCccccCCCCCCeEECCCCCCC
Q 038552 392 IPVTLSACVSLEYLNISRNFFH 413 (659)
Q Consensus 392 ~~~~~~~~~~L~~L~l~~n~l~ 413 (659)
..+..+++|+.|+|++|.+.
T Consensus 191 --~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 191 --RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp --GGGTTCTTCSEEECCSEEEE
T ss_pred --hHHccCCCCCEEEccCCcCc
Confidence 23444455555555555444
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=3.7e-17 Score=154.30 Aligned_cols=153 Identities=22% Similarity=0.276 Sum_probs=91.7
Q ss_pred CcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccC
Q 038552 33 LQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPF 112 (659)
Q Consensus 33 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 112 (659)
-+.++.+++.+. .+|..+. ++|++|++++|.+.+..|..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345555555554 3443332 5566666666666555555566666666666666666544444456666666666666
Q ss_pred ccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCC
Q 038552 113 NRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGM 190 (659)
Q Consensus 113 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 190 (659)
|.++ .++...+..+++|+.|++++|+++ .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+..
T Consensus 98 N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 6665 444444335666666666666666 455666666777777777776665555566667777777777776653
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.2e-17 Score=169.43 Aligned_cols=178 Identities=20% Similarity=0.165 Sum_probs=138.8
Q ss_pred CCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCcccc-CCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552 233 MTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIG-ELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS 311 (659)
Q Consensus 233 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 311 (659)
-+.++++++.++ .+|..+. ..++.|+|++|.+++..+..+. .+++|++|+|++|.+.+..+..|..+++|++|+|+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 467889999888 4676543 4689999999999988888887 89999999999999998888889999999999999
Q ss_pred CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccccc
Q 038552 312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV 391 (659)
Q Consensus 312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 391 (659)
+|.+.+..+..|..+++|+.|++++|.+.+.. +..|..+++|++|+|++|++++.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-------------------------~~~~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD-------------------------RNAFEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-------------------------TTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEEC-------------------------HHHhCCcccCCEEECCCCcCCee
Confidence 99999777778899999999888888877433 34455666777777777777654
Q ss_pred CCccc---cCCCCCCeEECCCCCCCCCCcccccCCCC--CCEEECCCCcccc
Q 038552 392 IPVTL---SACVSLEYLNISRNFFHGIIPLSLSSLKS--IKEFNVSSNNLSG 438 (659)
Q Consensus 392 ~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~ 438 (659)
.+..| ..+++|++|+|++|.+.+..+..+..++. ++.|++++|++..
T Consensus 152 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 44444 45777888888888877666666666666 3778888887754
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=7e-18 Score=154.45 Aligned_cols=133 Identities=26% Similarity=0.349 Sum_probs=91.7
Q ss_pred eeccccccccCCCcc-ccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCC
Q 038552 356 SLDLSNNLLNGSLPL-QVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSN 434 (659)
Q Consensus 356 ~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 434 (659)
.|++++|.+.+..+. .+..+++|++|+|++|++++..|..|.++++|++|+|++|++.+..+..|.++++|+.|++++|
T Consensus 33 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp EEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 455555555544443 3677777888888888887777777777888888888888887777777777888888888888
Q ss_pred cccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCcccC
Q 038552 435 NLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGI 488 (659)
Q Consensus 435 ~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 488 (659)
.+++..|..+..+++|+.|++++|++.+.++.......+....+.++...|+.+
T Consensus 113 ~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 113 QISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred cCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 888777777777888888888888887776643222222333444555566544
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2.3e-17 Score=151.91 Aligned_cols=154 Identities=15% Similarity=0.166 Sum_probs=122.4
Q ss_pred cCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCE
Q 038552 28 GSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEW 107 (659)
Q Consensus 28 ~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 107 (659)
..+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55678888999888888 555 6888889999999888663 3457888899999999999888777888888999999
Q ss_pred EeccCccccccChHHHhcCCCCCcEEEccCCc-CCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCC
Q 038552 108 IYLPFNRFSGSLPLDIAVNLPNLKALAIGGNN-FFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQN 186 (659)
Q Consensus 108 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (659)
|++++|.+++..|..+. .+++|+.|++++|. ++ .++ .+..+++|+.|++++|.+++.. .+..+++|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHh-hCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence 99999988866676665 78899999999987 54 445 5888999999999999887643 6788899999999998
Q ss_pred CCCC
Q 038552 187 NLGM 190 (659)
Q Consensus 187 ~l~~ 190 (659)
++..
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 8753
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=3.8e-17 Score=150.46 Aligned_cols=154 Identities=15% Similarity=0.231 Sum_probs=110.0
Q ss_pred ccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCC
Q 038552 51 VGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNL 130 (659)
Q Consensus 51 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 130 (659)
...+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+. .+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhc-CCCCC
Confidence 356777888888888775 445 5777888888888888654 234677788888888888877755555554 67888
Q ss_pred cEEEccCCcCCcccChhccCCCCCCEEEccCCC-CccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCc
Q 038552 131 KALAIGGNNFFGSIPNSLSNASNLEILDLTSNQ-LKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLK 209 (659)
Q Consensus 131 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~ 209 (659)
++|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.++.. ..+..+++|+
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~--------~~l~~l~~L~ 184 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY--------RGIEDFPKLN 184 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC--------TTGGGCSSCC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh--------HHhccCCCCC
Confidence 888888888877667777888888888888887 54 344 577788888888888877542 1566677888
Q ss_pred EEEccCCccc
Q 038552 210 VISLYANQFG 219 (659)
Q Consensus 210 ~L~l~~n~~~ 219 (659)
.|++++|++.
T Consensus 185 ~L~l~~N~i~ 194 (197)
T 4ezg_A 185 QLYAFSQTIG 194 (197)
T ss_dssp EEEECBC---
T ss_pred EEEeeCcccC
Confidence 8888888765
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2.6e-17 Score=158.67 Aligned_cols=169 Identities=25% Similarity=0.302 Sum_probs=83.9
Q ss_pred CCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeC
Q 038552 255 VNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNA 334 (659)
Q Consensus 255 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 334 (659)
.++..++++++.+++.. .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+++..+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 33444555555554322 3445555666666666555 233 35555666666666665553322 555566666666
Q ss_pred CCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCC
Q 038552 335 SRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG 414 (659)
Q Consensus 335 ~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 414 (659)
++|++++ +|... . +.++ .|++++|.+.+. ..+..+++|++|+|++|++++. + .+..+++|++|++++|.+.+
T Consensus 93 ~~N~l~~-l~~~~-~-~~L~-~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 93 NRNRLKN-LNGIP-S-ACLS-RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CSSCCSC-CTTCC-C-SSCC-EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCccCC-cCccc-c-Cccc-EEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 6555542 21111 1 2232 344444444321 1344555555555555555543 2 35555555555555555554
Q ss_pred CCcccccCCCCCCEEECCCCccccc
Q 038552 415 IIPLSLSSLKSIKEFNVSSNNLSGL 439 (659)
Q Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (659)
. ..+..+++|+.|++++|.+++.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 4 3455555555555555555443
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=5.8e-19 Score=188.69 Aligned_cols=191 Identities=20% Similarity=0.193 Sum_probs=108.5
Q ss_pred ccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCC-------------CCCCCCccccCCCCCcEEE-ccCCcccc
Q 038552 252 RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNS-------------LQGSIPSSLGNLTKLVELP-LSYNNLQG 317 (659)
Q Consensus 252 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~~ 317 (659)
..++.|+.|++++|.+. .+|+.++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34556666666666664 456666666666666665443 2233344444444444444 3332211
Q ss_pred ccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCcccc
Q 038552 318 NIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLS 397 (659)
Q Consensus 318 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 397 (659)
.|+.+.+++|.+.. ++ ...+. .|++++|.+++ +|. ++.+++|+.|+|++|.++ .+|..++
T Consensus 424 ----------~L~~l~l~~n~i~~-l~-----~~~L~-~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLK-ME-----YADVR-VLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp ----------HHHHHHHHHHHHHH-HH-----HTTCS-EEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred ----------hhhhhhhhcccccc-cC-----ccCce-EEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 01111122222221 00 11233 56667776664 444 666777777777777776 5566677
Q ss_pred CCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccc-hhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552 398 ACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLI-PEFLKNLSFMEFLDLSYNHFEGEVPK 466 (659)
Q Consensus 398 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~l~l~~n~l~~~~p~ 466 (659)
.+++|++|+|++|.+++ +| .++.+++|+.|++++|.+++.. |..+..+++|+.|++++|++++..|.
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 77777777777777765 45 6677777777777777777665 66777777777777777777665553
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3.2e-17 Score=158.10 Aligned_cols=171 Identities=21% Similarity=0.262 Sum_probs=146.2
Q ss_pred CCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccce
Q 038552 277 ELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLS 356 (659)
Q Consensus 277 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~ 356 (659)
.+.++..++++++.+.+. + .+..+++|++|++++|.+. .++ .+..+++|+.|++++|.+++..+ +..++.++ .
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~-~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLE-E 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCC-E
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCC-E
Confidence 456677888999998844 3 5788999999999999998 455 68899999999999999986544 88899998 9
Q ss_pred eccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcc
Q 038552 357 LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436 (659)
Q Consensus 357 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 436 (659)
|++++|.+.+. |. +.. ++|++|+|++|++++. ..+..+++|++|++++|++++. + .+..+++|+.|++++|.+
T Consensus 90 L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 90 LSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 99999999864 32 333 9999999999999864 3689999999999999999865 3 688999999999999999
Q ss_pred cccchhhhcCCCCCCeeeCcCCcCccc
Q 038552 437 SGLIPEFLKNLSFMEFLDLSYNHFEGE 463 (659)
Q Consensus 437 ~~~~~~~l~~l~~L~~l~l~~n~l~~~ 463 (659)
++. ..+..+++|+.|++++|++.+.
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch--HHhccCCCCCEEeCCCCcccCC
Confidence 987 6788999999999999999865
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=1.3e-18 Score=186.08 Aligned_cols=180 Identities=20% Similarity=0.216 Sum_probs=97.3
Q ss_pred CCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccC-------------CCccccccccCCCCCcEEE-ccCCccC
Q 038552 3 LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNY-------------LTGQLPDFVGNLSALKVFY-IIGNSLG 68 (659)
Q Consensus 3 ~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~-------------~~~~~~~~~~~l~~L~~L~-l~~n~l~ 68 (659)
+..+++|+.|+|++|.++ .+|..+++|++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 355677777777777776 667777777777777776554 4445556666666666666 3433221
Q ss_pred ccccc------ccCC--CCCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcC
Q 038552 69 GKIPT------TLGL--LRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNF 140 (659)
Q Consensus 69 ~~~~~------~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 140 (659)
. ++. .+.. ...|++|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+. .+++|+.|++++|.+
T Consensus 424 ~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 424 D-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASDNAL 498 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCC
T ss_pred h-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh-cCCCCCEEECCCCCC
Confidence 0 000 0000 0135555555555553 343 555555555555555555 5555444 455555555555555
Q ss_pred CcccChhccCCCCCCEEEccCCCCcccc-ccccCCCCCCCEEECCCCCCCC
Q 038552 141 FGSIPNSLSNASNLEILDLTSNQLKGKV-SIDFSSLKNLSWLNLEQNNLGM 190 (659)
Q Consensus 141 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~ 190 (659)
++ +| .++.+++|+.|++++|.+++.. |..++.+++|+.|++++|.+++
T Consensus 499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 54 33 4555555555555555555444 4555555555555555555543
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=9.6e-17 Score=160.76 Aligned_cols=100 Identities=11% Similarity=0.042 Sum_probs=47.8
Q ss_pred cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCc-EEEccCCCCCCCCCccccCCCCCcEEEc
Q 038552 232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQ-QLSLYNNSLQGSIPSSLGNLTKLVELPL 310 (659)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l 310 (659)
+|+.+++.+|.++...+..|.++++|+.+++.+| +....+.+|.++.+|+ .+++.+ .+....+.+|.+|++|+.+++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 4455555544444333344455555555555444 3333334455555555 555544 343334444555555555555
Q ss_pred cCCccccccCccCcCCCCCCEEe
Q 038552 311 SYNNLQGNIPSSLGNCQILRMFN 333 (659)
Q Consensus 311 ~~n~l~~~~~~~~~~~~~L~~L~ 333 (659)
++|.+....+.+|.++++|+.++
T Consensus 305 ~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 305 TGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCccCccchhhhcCCcchhhhc
Confidence 55554444444455555555443
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=9e-17 Score=177.38 Aligned_cols=180 Identities=22% Similarity=0.220 Sum_probs=120.0
Q ss_pred ChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCC
Q 038552 223 PHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNL 302 (659)
Q Consensus 223 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 302 (659)
+..+..+. .|+.|++++|.+. .+|..+..+++|+.|+|++|.++ .+|..|+.+++|++|+|++|.+. .+|..++.+
T Consensus 217 ~~~~~~l~-~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQ-LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -----CCC-CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred hhhhccCC-CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 33343333 6777777777766 56767778899999999999998 78888999999999999999999 779899999
Q ss_pred CCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceee
Q 038552 303 TKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLD 382 (659)
Q Consensus 303 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 382 (659)
++|++|+|++|.++ .+|..|..+++|+.|++++|.+++.+|..+.........+++++|.+.+.+|. .|+.|+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~ 365 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIE 365 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeE
Confidence 99999999999997 78888999999999999999999988888876654433588999999988875 456667
Q ss_pred cCCC--------cccccCCccccCCCCCCeEECCCCCCC
Q 038552 383 ISGN--------QFSGVIPVTLSACVSLEYLNISRNFFH 413 (659)
Q Consensus 383 L~~n--------~l~~~~~~~~~~~~~L~~L~l~~n~l~ 413 (659)
+++| .+.+..+..+..+..+....+++|-+.
T Consensus 366 l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 366 INTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------------------CCC
T ss_pred eecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 7766 333333344455556666667777654
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=144.05 Aligned_cols=110 Identities=25% Similarity=0.323 Sum_probs=93.6
Q ss_pred eeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCc
Q 038552 356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNN 435 (659)
Q Consensus 356 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 435 (659)
+|++++|.+. .+|..+..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|+.|++++|.
T Consensus 35 ~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 35 ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp EEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC
Confidence 5666666665 556778888899999999999988888889999999999999999998888889999999999999999
Q ss_pred ccccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552 436 LSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK 466 (659)
Q Consensus 436 l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~ 466 (659)
+++..+..+..+++|+.|++++|++.+.+..
T Consensus 114 l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 114 ISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 9877777788899999999999999887653
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=9.3e-16 Score=140.27 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=98.6
Q ss_pred CCCEEeCCCcccccccch-hhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEE
Q 038552 328 ILRMFNASRNKLTGALPH-QLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLN 406 (659)
Q Consensus 328 ~L~~L~l~~n~l~~~~~~-~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 406 (659)
+++.|++++|.+.+..+. .+..++.++ .|++++|.+.+..|..+..+++|++|+|++|++++..+..|.++++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLV-KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCC-EEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCC-EEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 344444444444332222 234444444 555555555556667788888888899999988888888888889999999
Q ss_pred CCCCCCCCCCcccccCCCCCCEEECCCCcccccchh-hhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCc
Q 038552 407 ISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPE-FLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLC 485 (659)
Q Consensus 407 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc 485 (659)
|++|.+++..|..+..+++|+.|++++|++.+..+- .+.. .++...+..+...+..|.. +....-.++..+...|
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C 184 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKC 184 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCc
Confidence 999999888888888899999999999998876542 1111 1222234445555554532 3334444555565556
Q ss_pred c
Q 038552 486 G 486 (659)
Q Consensus 486 ~ 486 (659)
.
T Consensus 185 ~ 185 (192)
T 1w8a_A 185 S 185 (192)
T ss_dssp C
T ss_pred C
Confidence 4
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.8e-15 Score=135.43 Aligned_cols=133 Identities=22% Similarity=0.214 Sum_probs=100.4
Q ss_pred CCCCEEeCCCcccc-cccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeE
Q 038552 327 QILRMFNASRNKLT-GALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYL 405 (659)
Q Consensus 327 ~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 405 (659)
++|+.|++++|.++ +.+|..+..++.++ .|++++|.+.+. ..+..+++|++|+|++|.+++.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~-~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLE-FLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCC-EEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCC-EEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 44555555555554 44454455555555 566666666544 567788899999999999987778777789999999
Q ss_pred ECCCCCCCCCC-cccccCCCCCCEEECCCCcccccch---hhhcCCCCCCeeeCcCCcCcc
Q 038552 406 NISRNFFHGII-PLSLSSLKSIKEFNVSSNNLSGLIP---EFLKNLSFMEFLDLSYNHFEG 462 (659)
Q Consensus 406 ~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~l~l~~n~l~~ 462 (659)
++++|.+.+.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999998653 2688899999999999999987765 578899999999999998763
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=1.2e-15 Score=152.88 Aligned_cols=265 Identities=14% Similarity=0.150 Sum_probs=137.3
Q ss_pred CCCCCEEECCCCCCCCCCCCCccccccccC-CCCCcEEEccCCccc--cccChhHHhccccCCEEEcccCcccccCCccc
Q 038552 175 LKNLSWLNLEQNNLGMGTANDLDFVTFLTN-CSSLKVISLYANQFG--GELPHSIANLSSTMTDFRIGANQISGTIPPGI 251 (659)
Q Consensus 175 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~n~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 251 (659)
+.+++.|.++++ +.. .-...+.. +++|+.|||++|.+. ...+..+ . .+..+.+..+.+. +..|
T Consensus 24 ~~~l~~L~l~g~-i~~------~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~-~~~~~~~~~~~I~---~~aF 89 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNA------EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---P-NGKFYIYMANFVP---AYAF 89 (329)
T ss_dssp HHHCSEEEEEEE-ECH------HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---G-GGCCEEECTTEEC---TTTT
T ss_pred hCceeEEEEecc-ccH------HHHHHHHHhhccCeEEecCcceeEEecCccccc---c-ccccccccccccC---HHHh
Confidence 456888888754 211 11223333 788999999998876 1111111 1 1223333333222 2344
Q ss_pred cc--------CCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCcc----cccc
Q 038552 252 RN--------LVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNL----QGNI 319 (659)
Q Consensus 252 ~~--------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~ 319 (659)
.+ +++|+.+++.+ .++...+.+|.+|++|+.+++.+|.+....+..|..+.++..+.+..+.. ....
T Consensus 90 ~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~ 168 (329)
T 3sb4_A 90 SNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE 168 (329)
T ss_dssp EEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT
T ss_pred cccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc
Confidence 55 88899999887 77766677888889999999988888777777888877777777655321 1122
Q ss_pred CccCcCCCCCC-EEeCCCcccccccchhhhh----cccccceeccccccccCCCcccc-ccCCCCceeecCCCcccccCC
Q 038552 320 PSSLGNCQILR-MFNASRNKLTGALPHQLLS----ITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVIP 393 (659)
Q Consensus 320 ~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~----~~~l~~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~ 393 (659)
...|.++..|+ .+.+.... .++..+.. ...+. .+.+.++-.. .....+ ..+++|++|+|++|+++.+.+
T Consensus 169 ~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~-~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 169 HFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDIN-FLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPD 243 (329)
T ss_dssp TSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCS-EEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred ccccccccccceeEEecCCC---cHHHHHhhcccCccccc-eEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecH
Confidence 33455556665 33333211 12221111 11111 1222211100 000011 124555555555555554444
Q ss_pred ccccCCCCCCeEECCCCCCCCCCcccccCCCCCC-EEECCCCcccccchhhhcCCCCCCeeeCcCCcCc
Q 038552 394 VTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIK-EFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE 461 (659)
Q Consensus 394 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~ 461 (659)
.+|.+|++|++|++.+| +..+.+.+|.+|++|+ .+++.+ .++...+..|..+++|+.+++++|.+.
T Consensus 244 ~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 45555555555555554 4444444555555555 555555 444444455555555555555555544
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=2.1e-16 Score=174.41 Aligned_cols=146 Identities=20% Similarity=0.233 Sum_probs=103.9
Q ss_pred cCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccC
Q 038552 94 MFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFS 173 (659)
Q Consensus 94 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 173 (659)
..+..+..++.|+.|+|++|.+. .+|..++ .+++|++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 45666777778888888887777 7777776 6778888888888877 66777888888888888888877 5677788
Q ss_pred CCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcc
Q 038552 174 SLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPG 250 (659)
Q Consensus 174 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 250 (659)
.+++|++|+|++|.++ .++..+..+++|+.|+|++|.+.+.+|..+.........+++.+|.+++.+|..
T Consensus 291 ~l~~L~~L~L~~N~l~-------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-------TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp GGTTCSEEECCSSCCC-------CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CCCCCCEEECCCCCCC-------ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 8888888888888775 345557778888888888888888888877665433334567777777666643
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2.9e-15 Score=134.05 Aligned_cols=132 Identities=18% Similarity=0.197 Sum_probs=71.6
Q ss_pred CCCcEEeccccCCC-ccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEe
Q 038552 31 LNLQTLAIDFNYLT-GQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIY 109 (659)
Q Consensus 31 ~~L~~L~ls~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 109 (659)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666665 45555556666666666666665433 4556666666666666666554555555566666666
Q ss_pred ccCccccccChH-HHhcCCCCCcEEEccCCcCCcccC---hhccCCCCCCEEEccCCCCc
Q 038552 110 LPFNRFSGSLPL-DIAVNLPNLKALAIGGNNFFGSIP---NSLSNASNLEILDLTSNQLK 165 (659)
Q Consensus 110 l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~ 165 (659)
+++|.++ .+|. .....+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666555 3321 112245555555555555543332 24445555555555555443
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=4.4e-15 Score=134.08 Aligned_cols=111 Identities=21% Similarity=0.280 Sum_probs=88.4
Q ss_pred eeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCc
Q 038552 356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNN 435 (659)
Q Consensus 356 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 435 (659)
.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 32 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ 111 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCc
Confidence 56666666665555567778888888888888887766777888888888888888887777777888888889998888
Q ss_pred ccccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552 436 LSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK 466 (659)
Q Consensus 436 l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~ 466 (659)
+++..+..+..+++|+.|++++|++.+.+|.
T Consensus 112 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 112 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 8877666678888888999998888877663
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.8e-15 Score=132.38 Aligned_cols=128 Identities=23% Similarity=0.323 Sum_probs=92.2
Q ss_pred CCCcEEEccCCccc-cccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCcee
Q 038552 303 TKLVELPLSYNNLQ-GNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKL 381 (659)
Q Consensus 303 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L 381 (659)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.++ +. ..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------~~--~~~~~l~~L~~L 69 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-------------------------SI--ANLPKLNKLKKL 69 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-------------------------CC--TTCCCCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-------------------------Cc--hhhhcCCCCCEE
Confidence 45666666666665 455555566666666666655554 22 356667788888
Q ss_pred ecCCCcccccCCccccCCCCCCeEECCCCCCCCC-CcccccCCCCCCEEECCCCcccccch---hhhcCCCCCCeeeCcC
Q 038552 382 DISGNQFSGVIPVTLSACVSLEYLNISRNFFHGI-IPLSLSSLKSIKEFNVSSNNLSGLIP---EFLKNLSFMEFLDLSY 457 (659)
Q Consensus 382 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~l~l~~ 457 (659)
++++|.+++.+|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++
T Consensus 70 ~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888876777777788888888888888764 34678888888888888888887655 5678888888888763
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=9.1e-14 Score=141.90 Aligned_cols=271 Identities=10% Similarity=0.076 Sum_probs=184.0
Q ss_pred CCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEE
Q 038552 29 SLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWI 108 (659)
Q Consensus 29 ~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 108 (659)
.+..++.+.+.+ .++..-..+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .++...+.+|.+|.+|+.+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 446777777754 4554556677775 6888888765 555555667774 688888875 5665666788888888888
Q ss_pred eccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCC
Q 038552 109 YLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNL 188 (659)
Q Consensus 109 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 188 (659)
+++.|.++ .++...+ ...+|+.+.+..+ ++.+-..+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+.. .+
T Consensus 186 ~l~~n~l~-~I~~~aF-~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i 259 (401)
T 4fdw_A 186 DLSKTKIT-KLPASTF-VYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GV 259 (401)
T ss_dssp ECTTSCCS-EECTTTT-TTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TC
T ss_pred ecCCCcce-EechhhE-eecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Cc
Confidence 88888887 7777777 4678888888744 66566677888888888888864 55566667777 6788888843 34
Q ss_pred CCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCC
Q 038552 189 GMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLH 268 (659)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 268 (659)
+.. -..++..|++|+.+++.++.+.. +......+..|.+|++|+.+++. +.+.
T Consensus 260 ~~I------~~~aF~~c~~L~~l~l~~~~~~~--------------------~~~~~I~~~aF~~c~~L~~l~l~-~~i~ 312 (401)
T 4fdw_A 260 TNI------ASRAFYYCPELAEVTTYGSTFND--------------------DPEAMIHPYCLEGCPKLARFEIP-ESIR 312 (401)
T ss_dssp CEE------CTTTTTTCTTCCEEEEESSCCCC--------------------CTTCEECTTTTTTCTTCCEECCC-TTCC
T ss_pred cEE------ChhHhhCCCCCCEEEeCCccccC--------------------CcccEECHHHhhCCccCCeEEeC-CceE
Confidence 321 12456677778887777665430 00111223456777888888887 3465
Q ss_pred CCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCC-CCCEEeCCCccc
Q 038552 269 GTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQ-ILRMFNASRNKL 339 (659)
Q Consensus 269 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l 339 (659)
.....+|.+|.+|+.+.|..+ +......+|.++ +|+.+.+++|.+....+..|.+++ .++.+.+..+.+
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 555667778888888888554 554556677888 888888888777655556666664 567777766543
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=7.1e-14 Score=143.58 Aligned_cols=332 Identities=11% Similarity=0.074 Sum_probs=160.9
Q ss_pred cccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhc
Q 038552 46 QLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAV 125 (659)
Q Consensus 46 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 125 (659)
....+|.++.+|+.+.+..+ +......+|.+|++|+.+++..+ ++.....+|.++.+|+.+.+..+ +. .+....+.
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~ 137 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFK 137 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeee
Confidence 33445555555555555432 33333445555566666655433 33333445555555555555433 22 23333332
Q ss_pred CCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCC
Q 038552 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNC 205 (659)
Q Consensus 126 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~ 205 (659)
.+..+ .+.... ........+|.++++|+.+.+.++ +.......|..+.+|+.+.+..+ ++.. -...+..|
T Consensus 138 ~~~~~-~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I------~~~~F~~~ 207 (394)
T 4fs7_A 138 GCDFK-EITIPE-GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKII------RDYCFAEC 207 (394)
T ss_dssp TCCCS-EEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEE------CTTTTTTC
T ss_pred ccccc-ccccCc-cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEe------Cchhhccc
Confidence 33222 222211 111122345666666666666543 23344455666666666666543 2211 11234455
Q ss_pred CCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEE
Q 038552 206 SSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLS 285 (659)
Q Consensus 206 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 285 (659)
..|+.+.+..+... +....... ..++.+.+... ++......+..+..++.+.+..+.. ......|..+..++.+.
T Consensus 208 ~~L~~i~~~~~~~~--i~~~~~~~-~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 208 ILLENMEFPNSLYY--LGDFALSK-TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVI 282 (394)
T ss_dssp TTCCBCCCCTTCCE--ECTTTTTT-CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEE
T ss_pred cccceeecCCCceE--eehhhccc-CCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceec
Confidence 55555544433211 01111111 13444433322 1111223344555555555544322 13334455555555555
Q ss_pred ccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceecccccccc
Q 038552 286 LYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLN 365 (659)
Q Consensus 286 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~ 365 (659)
+..+.+. ...|..+.+|+.+.+.++ +......+|.+|.+|+.+++.+ + +.
T Consensus 283 ~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-------------------------~-v~ 332 (394)
T 4fs7_A 283 YGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-------------------------L-VE 332 (394)
T ss_dssp ECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-------------------------T-CC
T ss_pred cCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-------------------------c-cc
Confidence 5443321 234555556666655433 3323344555555555555432 1 22
Q ss_pred CCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEE
Q 038552 366 GSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEF 429 (659)
Q Consensus 366 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 429 (659)
.....+|.++.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ +. .+..+|.++++|+.+
T Consensus 333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 233456778888888888766 66566678888888888888765 22 334577888877764
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=5.6e-14 Score=144.36 Aligned_cols=326 Identities=12% Similarity=0.045 Sum_probs=216.5
Q ss_pred CCCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCC
Q 038552 2 NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNL 81 (659)
Q Consensus 2 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 81 (659)
+|.+|++|+++.+..+ ++.....+|.+|.+|+.+++..+ ++.....+|.++..|+.+.+..+ +.......|.++..+
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 5788888888888754 55556778888888888888654 55455667888888888777654 334444566666544
Q ss_pred CEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccC
Q 038552 82 VDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTS 161 (659)
Q Consensus 82 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 161 (659)
...... ........+|.+|++|+.+.+..+. . .++...+..+.+|+.+.+..+ ++.+....+.++..|+.+.+..
T Consensus 143 ~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 143 EITIPE--GVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp EEECCT--TCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccCc--cccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 433322 2233345678889999999987653 3 577777778889999988765 4445566788888888888776
Q ss_pred CCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccC
Q 038552 162 NQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN 241 (659)
Q Consensus 162 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 241 (659)
+... +...+....+|+.+.+...- +.. -...+..|..|+.+.+..+... +..........++.+.....
T Consensus 218 ~~~~--i~~~~~~~~~l~~i~ip~~~-~~i------~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 218 SLYY--LGDFALSKTGVKNIIIPDSF-TEL------GKSVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp TCCE--ECTTTTTTCCCCEEEECTTC-CEE------CSSTTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSS
T ss_pred CceE--eehhhcccCCCceEEECCCc-eec------ccccccccccceeEEcCCCcce--eeccccccccccceeccCce
Confidence 5432 22233445678888776432 111 1234567788888887766432 22222222235666665544
Q ss_pred cccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCc
Q 038552 242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPS 321 (659)
Q Consensus 242 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 321 (659)
.+. ...+..+.+|+.+.+.++ +......+|.++.+|+.++|.++ +......+|.+|++|+.+.+..+ +......
T Consensus 287 ~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 287 IVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp EEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred eec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 332 245678889999988654 55455677889999999999754 55556778999999999999776 6655667
Q ss_pred cCcCCCCCCEEeCCCcccccccchhhhhccccc
Q 038552 322 SLGNCQILRMFNASRNKLTGALPHQLLSITTLT 354 (659)
Q Consensus 322 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 354 (659)
+|.+|++|+.+++..+ +. .+...+.+++.|+
T Consensus 361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred HhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 8999999999998754 22 2344555555554
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=3.9e-15 Score=130.16 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=39.2
Q ss_pred CCCcEEeccccCCC-ccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEe
Q 038552 31 LNLQTLAIDFNYLT-GQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIY 109 (659)
Q Consensus 31 ~~L~~L~ls~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 109 (659)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34455555555444 34444444444555555554444332 3344444455555544444433444444444444444
Q ss_pred ccCcccc
Q 038552 110 LPFNRFS 116 (659)
Q Consensus 110 l~~n~~~ 116 (659)
+++|.++
T Consensus 95 ls~N~i~ 101 (149)
T 2je0_A 95 LSGNKIK 101 (149)
T ss_dssp CTTSCCC
T ss_pred CCCCcCC
Confidence 4444444
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=1.1e-13 Score=141.32 Aligned_cols=271 Identities=9% Similarity=0.084 Sum_probs=203.2
Q ss_pred CCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEE
Q 038552 6 YSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLN 85 (659)
Q Consensus 6 ~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 85 (659)
+..++.+.+..+ ++.....+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.+ .+....+..|.+|++|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 467788888764 444567788886 7999999776 666667788885 799999986 56566678899999999999
Q ss_pred eecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCc
Q 038552 86 VGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLK 165 (659)
Q Consensus 86 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 165 (659)
+..|.++.....+|. +.+|+.+.+..+ ++ .++...+..+++|+.+++..+ ++.+-..+|.+ .+|+.+.+. +.++
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 999999855555666 689999999854 65 788888888999999999865 55555667777 789999995 4577
Q ss_pred cccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccc
Q 038552 166 GKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISG 245 (659)
Q Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 245 (659)
.....+|.++++|+.+.+..+.+....... --...+..|++|+.+.+..+ + +.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~-I~~~aF~~c~~L~~l~l~~~-i-------------------------~~ 313 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAM-IHPYCLEGCPKLARFEIPES-I-------------------------RI 313 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCE-ECTTTTTTCTTCCEECCCTT-C-------------------------CE
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccE-ECHHHhhCCccCCeEEeCCc-e-------------------------EE
Confidence 677888999999999999887654111000 11245667777777766522 2 11
Q ss_pred cCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCC-CCcEEEccCCccc
Q 038552 246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLT-KLVELPLSYNNLQ 316 (659)
Q Consensus 246 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~ 316 (659)
.-...|.+|++|+.+.+..+ +......+|.++ +|+.+++.+|.+.......|.+++ .++.|++..+.+.
T Consensus 314 I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 314 LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 23346778888999998654 665566788889 999999999988877777788875 7889999877644
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=3.9e-14 Score=129.34 Aligned_cols=110 Identities=23% Similarity=0.271 Sum_probs=83.0
Q ss_pred CCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEEC
Q 038552 328 ILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNI 407 (659)
Q Consensus 328 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 407 (659)
+|+.|++++|.++ .+|..+..++.++ .|++++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~-~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLT-LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCC-EEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 3444444444444 3444444555554 5556666666566667888899999999999999888888999999999999
Q ss_pred CCCCCCCCCcccccCCCCCCEEECCCCccccc
Q 038552 408 SRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGL 439 (659)
Q Consensus 408 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (659)
++|.+....+..|..+++|+.|++++|++...
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 99999977777789999999999999998653
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=7.3e-14 Score=125.98 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=95.4
Q ss_pred CcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccc
Q 038552 281 LQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS 360 (659)
Q Consensus 281 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~ 360 (659)
.+.++++++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------- 65 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-------------------- 65 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--------------------
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce--------------------
Confidence 356666666666 333322 256666666666666544445556666666655555544
Q ss_pred cccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccc
Q 038552 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLI 440 (659)
Q Consensus 361 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (659)
+..+..+..+++|++|+|++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..
T Consensus 66 -----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 66 -----SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp -----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred -----EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 344445677888999999999998777777888999999999999998777666788999999999999998765
Q ss_pred h
Q 038552 441 P 441 (659)
Q Consensus 441 ~ 441 (659)
|
T Consensus 141 ~ 141 (177)
T 2o6r_A 141 P 141 (177)
T ss_dssp H
T ss_pred c
Confidence 5
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=3.4e-14 Score=127.95 Aligned_cols=134 Identities=19% Similarity=0.185 Sum_probs=86.1
Q ss_pred hhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCC
Q 038552 26 EIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSL 105 (659)
Q Consensus 26 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 105 (659)
.+.++.+|+.|++++|.++ .++......++|++|++++|.+.+. ..|..+++|++|++++|.+++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3455667777777777766 3343223333777777777776543 456777777777777777765433444677777
Q ss_pred CEEeccCccccccChH--HHhcCCCCCcEEEccCCcCCcccCh----hccCCCCCCEEEccCCCCc
Q 038552 106 EWIYLPFNRFSGSLPL--DIAVNLPNLKALAIGGNNFFGSIPN----SLSNASNLEILDLTSNQLK 165 (659)
Q Consensus 106 ~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~ 165 (659)
++|++++|.+. .+|. .+. .+++|+.|++++|.++. +|. .+..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777775 5554 333 57777777777777763 344 3677788888888777654
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=6.2e-14 Score=126.22 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=80.3
Q ss_pred eeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcc--cccCCCCCCEEECCC
Q 038552 356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPL--SLSSLKSIKEFNVSS 433 (659)
Q Consensus 356 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~ 433 (659)
.|++++|.+.+. ..+..+++|++|+|++|.+++..+..+..+++|++|++++|.+. .+|. .+..+++|+.|++++
T Consensus 46 ~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~ 122 (176)
T 1a9n_A 46 AIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILR 122 (176)
T ss_dssp EEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCS
T ss_pred EEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecC
Confidence 455555554433 45677889999999999998765565688999999999999996 4554 788899999999999
Q ss_pred Ccccccchh----hhcCCCCCCeeeCcCCcCcc
Q 038552 434 NNLSGLIPE----FLKNLSFMEFLDLSYNHFEG 462 (659)
Q Consensus 434 n~l~~~~~~----~l~~l~~L~~l~l~~n~l~~ 462 (659)
|.++.. |. .+..+++|+.||+++|....
T Consensus 123 N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 123 NPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp SGGGGS-TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCCc-HhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999754 44 47889999999999987653
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.7e-13 Score=122.24 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=89.1
Q ss_pred eeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCc
Q 038552 356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNN 435 (659)
Q Consensus 356 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 435 (659)
.+++++|.+. .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|++.+..+..|.++++|+.|+|++|.
T Consensus 13 ~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 5677777776 3555443 788889999999988888888889999999999999987777778889999999999999
Q ss_pred ccccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552 436 LSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK 466 (659)
Q Consensus 436 l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~ 466 (659)
+++..+..+..+++|+.|++++|++.+.++.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 9887777788889999999999999887663
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=6.4e-16 Score=142.32 Aligned_cols=153 Identities=26% Similarity=0.291 Sum_probs=84.2
Q ss_pred CCCCCcEEEccCCCCCCCCCc------cccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhc
Q 038552 277 ELKNLQQLSLYNNSLQGSIPS------SLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSI 350 (659)
Q Consensus 277 ~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 350 (659)
....++.++++++.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|+++
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~--------------- 78 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLG--------------- 78 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEE---------------
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECC---------------
Confidence 344555555555555554443 44445555555555555443 33 44444444444444
Q ss_pred ccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCc-ccccCCCCCCEE
Q 038552 351 TTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIP-LSLSSLKSIKEF 429 (659)
Q Consensus 351 ~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L 429 (659)
+|.+. .+|..+..+++|++|+|++|++++. | .+..+++|++|++++|.+.+..+ ..+..+++|+.|
T Consensus 79 ----------~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 79 ----------RNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp ----------EEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred ----------CCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 44444 3344444455666666666666542 2 45556666666666666654322 356667777777
Q ss_pred ECCCCcccccchh----------hhcCCCCCCeeeCcCCcCc
Q 038552 430 NVSSNNLSGLIPE----------FLKNLSFMEFLDLSYNHFE 461 (659)
Q Consensus 430 ~l~~n~l~~~~~~----------~l~~l~~L~~l~l~~n~l~ 461 (659)
++++|.+++.+|. .+..+++|+.|| +|+++
T Consensus 146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7777777665443 266777777776 55443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=6.7e-16 Score=142.20 Aligned_cols=154 Identities=23% Similarity=0.260 Sum_probs=94.1
Q ss_pred cCCCCCcEEeccccCCCccccc------cccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccC
Q 038552 28 GSLLNLQTLAIDFNYLTGQLPD------FVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICN 101 (659)
Q Consensus 28 ~~~~~L~~L~ls~~~~~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 101 (659)
.....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3344555555555555555444 66666666666666666644 44 5666666777777766666 45555666
Q ss_pred CCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccC-hhccCCCCCCEEEccCCCCcccccc----------
Q 038552 102 ISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIP-NSLSNASNLEILDLTSNQLKGKVSI---------- 170 (659)
Q Consensus 102 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~---------- 170 (659)
+++|++|++++|.++ .+| .+. .+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..|.
T Consensus 92 ~~~L~~L~L~~N~l~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 92 ADTLEELWISYNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHCSEEEEEEEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred CCcCCEEECcCCcCC-cCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 666777777777666 344 333 56667777777776664322 3566777777777777776655443
Q ss_pred ccCCCCCCCEEECCCCCCC
Q 038552 171 DFSSLKNLSWLNLEQNNLG 189 (659)
Q Consensus 171 ~l~~l~~L~~L~l~~n~l~ 189 (659)
.+..+++|+.|+ ++.++
T Consensus 169 ~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 169 VVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHCSSCSEEC--CGGGT
T ss_pred HHHhCCCcEEEC--CcccC
Confidence 256777777776 44443
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=3.7e-13 Score=120.42 Aligned_cols=107 Identities=20% Similarity=0.271 Sum_probs=88.9
Q ss_pred eeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCc
Q 038552 356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNN 435 (659)
Q Consensus 356 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 435 (659)
.+++++|.+. .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++.+..+..|..+++|+.|+|++|.
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 5777777775 5565554 788999999999988888888899999999999999987766677889999999999999
Q ss_pred ccccchhhhcCCCCCCeeeCcCCcCcccCC
Q 038552 436 LSGLIPEFLKNLSFMEFLDLSYNHFEGEVP 465 (659)
Q Consensus 436 l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p 465 (659)
+++..+..+..+++|+.|++++|++.+.++
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 987766678889999999999999887665
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.43 E-value=1.4e-11 Score=126.34 Aligned_cols=331 Identities=11% Similarity=0.108 Sum_probs=164.6
Q ss_pred cccccCCC-CCcEEEccCCccCcccccccCCCCCCCEEEeecCc---CCccCcccccCCCCCCEEeccCccccccChHHH
Q 038552 48 PDFVGNLS-ALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENR---FSGMFPRSICNISSLEWIYLPFNRFSGSLPLDI 123 (659)
Q Consensus 48 ~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 123 (659)
..+|.++. .|+.+.+..+ ++..-..+|.+|.+|+.+.+..+. ++..-..+|.+|.+|+.+.+..+ ++ .++...
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhh
Confidence 34555553 4666666543 444445566677777777665542 44344456666666766666543 33 455555
Q ss_pred hcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCcccccccc
Q 038552 124 AVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLT 203 (659)
Q Consensus 124 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 203 (659)
+..+.+|+.+.+..+ ...+....+..+..|+.+.+..+ ++.....+|.. .+|+.+.+..+-.. ....++.
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-------i~~~af~ 202 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-------IGTNAFS 202 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-------ECTTTTT
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-------cccchhh
Confidence 556666777766533 23344455666677777766543 33333444443 45666666543211 1122344
Q ss_pred CCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcE
Q 038552 204 NCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQ 283 (659)
Q Consensus 204 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 283 (659)
.|..+............ ....+.. .+.........+.....+..+.+.. .+......+|..+..|+.
T Consensus 203 ~c~~l~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~ 269 (394)
T 4gt6_A 203 ECFALSTITSDSESYPA-IDNVLYE-----------KSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLAS 269 (394)
T ss_dssp TCTTCCEEEECCSSSCB-SSSCEEE-----------ECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCE
T ss_pred hccccceeccccccccc-ccceeec-----------ccccccccccccccccccceEEcCC-cceEcccceeeecccccE
Confidence 55556555544332210 0000000 0000000000011112222333321 122223345666777777
Q ss_pred EEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceecccccc
Q 038552 284 LSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNL 363 (659)
Q Consensus 284 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~ 363 (659)
+.+.++... .....|.+++.|+.+.+.. .+......+|.+|.+|+.+++..+ ++
T Consensus 270 i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~----------------------- 323 (394)
T 4gt6_A 270 VKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT----------------------- 323 (394)
T ss_dssp EECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-----------------------
T ss_pred Eecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-----------------------
Confidence 777654332 4455666777777777743 344344456777777777666432 21
Q ss_pred ccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcc
Q 038552 364 LNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436 (659)
Q Consensus 364 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 436 (659)
.....+|.+|.+|+.+.|..+ ++.+...+|.+|++|+.+++.++... ..++..+.+|+.+.+..|.+
T Consensus 324 --~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 324 --QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp --EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred --EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 122346677777777777544 55455567777788888877776432 13566677777777766544
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.40 E-value=4.6e-11 Score=122.58 Aligned_cols=335 Identities=11% Similarity=0.100 Sum_probs=193.9
Q ss_pred cccCchhhcCCC-CCcEEeccccCCCccccccccCCCCCcEEEccCCc---cCcccccccCCCCCCCEEEeecCcCCccC
Q 038552 20 EGQIPEEIGSLL-NLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS---LGGKIPTTLGLLRNLVDLNVGENRFSGMF 95 (659)
Q Consensus 20 ~~~~~~~~~~~~-~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 95 (659)
+.....+|.++. .|+.+.+..+ ++.....+|.++.+|+.+.+..+. +......+|.+|.+|+.+.+..+ ++...
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 334456677764 4777777543 555566677777777777776542 43344566777777777766543 44445
Q ss_pred cccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCC
Q 038552 96 PRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSL 175 (659)
Q Consensus 96 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (659)
..+|..+.+|+.+.+..+ +. .++...+..+.+|+.+.+..+ ++.+-...|. ...|+.+.+..+ +......+|..+
T Consensus 130 ~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c 204 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAK-VTRIGTNAFSEC 204 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTT-CCEECTTTTTTC
T ss_pred hhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCc-ccccccchhhhc
Confidence 566777778888777643 22 455555556777887777654 3323334443 356888877654 333445567777
Q ss_pred CCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCC
Q 038552 176 KNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLV 255 (659)
Q Consensus 176 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 255 (659)
.++.......+........ + ............. .+. ...+..+.+.. .++......|.++.
T Consensus 205 ~~l~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~-------~~~-----~~~~~~~~ip~-~v~~i~~~aF~~c~ 265 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNV---L---YEKSANGDYALIR-------YPS-----QREDPAFKIPN-GVARIETHAFDSCA 265 (394)
T ss_dssp TTCCEEEECCSSSCBSSSC---E---EEECTTSCEEEEE-------CCT-----TCCCSEEECCT-TEEEECTTTTTTCS
T ss_pred cccceecccccccccccce---e---ecccccccccccc-------ccc-----ccccceEEcCC-cceEcccceeeecc
Confidence 7888777655443221100 0 0000000000000 000 00122222221 12222345677888
Q ss_pred CcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCC
Q 038552 256 NLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNAS 335 (659)
Q Consensus 256 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 335 (659)
.|+.+.+.++.. .....+|..+.+|+.+.+. +.+......+|.+|++|+.+.+..+ ++.....+|.+|.+|+.+.+.
T Consensus 266 ~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 266 YLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp SCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 999998865432 3445678889999999996 4455466678999999999999764 554556789999999988775
Q ss_pred CcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCC
Q 038552 336 RNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFF 412 (659)
Q Consensus 336 ~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 412 (659)
.+ ++ .....+|.+|++|+.+++.++.... ..+..+..|+.+.+..+.+
T Consensus 343 ~s-v~-------------------------~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 343 SS-VT-------------------------KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TT-CC-------------------------BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred cc-cC-------------------------EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 43 22 1223567777888888887775432 3566777888877766644
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=2.3e-12 Score=114.91 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=79.3
Q ss_pred CCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEee
Q 038552 8 NLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVG 87 (659)
Q Consensus 8 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 87 (659)
..+++++++|.++ .+|..+. .+|++|++++|.+++..|..|.++++|++|+|++|.+.+..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3567888888777 4565553 677888888888877777777788888888888888776666667778888888888
Q ss_pred cCcCCccCcccccCCCCCCEEeccCccccc
Q 038552 88 ENRFSGMFPRSICNISSLEWIYLPFNRFSG 117 (659)
Q Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 117 (659)
+|.+++..+..|..+++|++|++++|.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 887776555567777778888887777763
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=4.4e-12 Score=113.43 Aligned_cols=104 Identities=23% Similarity=0.319 Sum_probs=68.5
Q ss_pred CEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecC
Q 038552 10 IELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGEN 89 (659)
Q Consensus 10 ~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 89 (659)
+.+++++|.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56677777665 5555553 56777777777777666666777777777777777765544455666777777777777
Q ss_pred cCCccCcccccCCCCCCEEeccCcccc
Q 038552 90 RFSGMFPRSICNISSLEWIYLPFNRFS 116 (659)
Q Consensus 90 ~l~~~~~~~~~~l~~L~~L~l~~n~~~ 116 (659)
.+++..+..|..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 766544445666677777777766665
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=6.6e-13 Score=134.18 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=94.3
Q ss_pred CCCCcEEEccCCCCCCCCCcccc-----CCCCCcEEEccCCccccccCccC-cCCCCCCEEeCCCcccccccchhhhhcc
Q 038552 278 LKNLQQLSLYNNSLQGSIPSSLG-----NLTKLVELPLSYNNLQGNIPSSL-GNCQILRMFNASRNKLTGALPHQLLSIT 351 (659)
Q Consensus 278 ~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 351 (659)
+++|+.|++++|.+.......+. ..++|++|+|++|.++......+ ..+++|+.|
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L------------------- 131 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL------------------- 131 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEE-------------------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHh-------------------
Confidence 35677777777776532222211 12456666666665543221111 122344444
Q ss_pred cccceeccccccccCCCcccc-----ccCCCCceeecCCCccccc----CCccccCCCCCCeEECCCCCCCCC----Ccc
Q 038552 352 TLTLSLDLSNNLLNGSLPLQV-----GNLKNLVKLDISGNQFSGV----IPVTLSACVSLEYLNISRNFFHGI----IPL 418 (659)
Q Consensus 352 ~l~~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~ 418 (659)
+|++|.+++.....+ ...++|++|+|++|.+++. ++..+..+++|++|+|++|.+.+. ++.
T Consensus 132 ------~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 132 ------GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp ------ECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred ------hcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 444444433222222 2356788888888877643 333446677888888888887643 245
Q ss_pred cccCCCCCCEEECCCCccccc----chhhhcCCCCCCeeeCcCCcCcc
Q 038552 419 SLSSLKSIKEFNVSSNNLSGL----IPEFLKNLSFMEFLDLSYNHFEG 462 (659)
Q Consensus 419 ~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~l~l~~n~l~~ 462 (659)
.+...++|+.|+|++|.++.. ++..+...++|++|++++|++..
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 566777888888888888653 33455567888888888887753
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=6.5e-13 Score=134.23 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=88.8
Q ss_pred CCCcEEeccccCCCcccccccc-----CCCCCcEEEccCCccCccccccc-CCCCCCCEEEeecCcCCccCcccc-----
Q 038552 31 LNLQTLAIDFNYLTGQLPDFVG-----NLSALKVFYIIGNSLGGKIPTTL-GLLRNLVDLNVGENRFSGMFPRSI----- 99 (659)
Q Consensus 31 ~~L~~L~ls~~~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~----- 99 (659)
++|+.|++++|.++......+. ..++|++|+|++|.+.......+ ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4566666666666543333322 22566666666666543222222 234566666666666654333332
Q ss_pred cCCCCCCEEeccCcccccc----ChHHHhcCCCCCcEEEccCCcCCcc----cChhccCCCCCCEEEccCCCCcccc---
Q 038552 100 CNISSLEWIYLPFNRFSGS----LPLDIAVNLPNLKALAIGGNNFFGS----IPNSLSNASNLEILDLTSNQLKGKV--- 168 (659)
Q Consensus 100 ~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~--- 168 (659)
...++|++|++++|.++.. ++..+. ..++|++|++++|.++.. +...+...++|++|++++|.+++..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLA-GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHH-TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHh-cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2345677777777766521 222222 456677777777766532 2344566677777777777776432
Q ss_pred -ccccCCCCCCCEEECCCCCCCC
Q 038552 169 -SIDFSSLKNLSWLNLEQNNLGM 190 (659)
Q Consensus 169 -~~~l~~l~~L~~L~l~~n~l~~ 190 (659)
...+...++|++|+|++|.++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 2234456777777777777754
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=2.1e-11 Score=122.91 Aligned_cols=107 Identities=22% Similarity=0.219 Sum_probs=71.1
Q ss_pred eeccccc-cccCCCccccccCCCCceeecCC-CcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCC
Q 038552 356 SLDLSNN-LLNGSLPLQVGNLKNLVKLDISG-NQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSS 433 (659)
Q Consensus 356 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 433 (659)
.++.+++ .+. .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++.+..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 555 3555 66667777777774 777766666677777777777777777766666677777777777777
Q ss_pred CcccccchhhhcCCCCCCeeeCcCCcCcccCC
Q 038552 434 NNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVP 465 (659)
Q Consensus 434 n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p 465 (659)
|.|++..+..+..++ |+.|++++|++.+.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 777765555555554 7777777777766544
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=1e-10 Score=117.89 Aligned_cols=103 Identities=20% Similarity=0.234 Sum_probs=74.5
Q ss_pred EEEccCC-cccccCchhhcCCCCCcEEeccc-cCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeec
Q 038552 11 ELRVSKN-KLEGQIPEEIGSLLNLQTLAIDF-NYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGE 88 (659)
Q Consensus 11 ~L~ls~n-~~~~~~~~~~~~~~~L~~L~ls~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 88 (659)
.++.+++ .++ .+|. +..+.+|++|+|++ |.+.+..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 676 4676 77777788888875 777766667777777788888877777777777777777777777777
Q ss_pred CcCCccCcccccCCCCCCEEeccCcccc
Q 038552 89 NRFSGMFPRSICNISSLEWIYLPFNRFS 116 (659)
Q Consensus 89 n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 116 (659)
|.+++..+..+..+. |++|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777754444555554 777777777765
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.07 E-value=1.1e-08 Score=104.17 Aligned_cols=146 Identities=15% Similarity=0.202 Sum_probs=86.0
Q ss_pred ccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhccc
Q 038552 273 DTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITT 352 (659)
Q Consensus 273 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 352 (659)
..+..+.+|+.+.+..+ +.......|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +.
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~------------ 275 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK------------ 275 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS------------
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce------------
Confidence 34455566666666543 22234445666666776666554 33334455666666666655322 11
Q ss_pred ccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECC
Q 038552 353 LTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVS 432 (659)
Q Consensus 353 l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 432 (659)
.....+|.++++|+.+.+.++.++.+...+|.+|++|+.++|..+ +..+...+|.+|.+|+.+.+.
T Consensus 276 -------------~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 276 -------------TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp -------------EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred -------------eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 122235666777777777777676666677777777777777654 544555677777788777776
Q ss_pred CCcccccchhhhcCCC
Q 038552 433 SNNLSGLIPEFLKNLS 448 (659)
Q Consensus 433 ~n~l~~~~~~~l~~l~ 448 (659)
.+ ++..-..+|..++
T Consensus 342 ~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 342 KS-ITLIESGAFEGSS 356 (379)
T ss_dssp TT-CCEECTTTTTTSS
T ss_pred Cc-cCEEchhHhhCCC
Confidence 54 4434345555543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.04 E-value=2.3e-08 Score=101.90 Aligned_cols=290 Identities=12% Similarity=0.056 Sum_probs=173.7
Q ss_pred hcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCC
Q 038552 27 IGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLE 106 (659)
Q Consensus 27 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 106 (659)
+....+|+.+.+.. .++.....+|.++.+|+.+.+..+ +......+|.++ +|+.+.+..+ ++.....+|..+ +|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence 44556677777754 345455567777777777777643 444445666666 5666666433 443334455544 677
Q ss_pred EEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCcc------------ccccccCC
Q 038552 107 WIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKG------------KVSIDFSS 174 (659)
Q Consensus 107 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~~l~~ 174 (659)
.+.+..+- + .+....+.. .+++.+.+..+ ++......+..+..++.+.+..+.... .....+..
T Consensus 117 ~i~lp~~~-~-~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 117 DFEFPGAT-T-EIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp EEECCTTC-C-EECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred cccCCCcc-c-ccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 77776542 2 344444422 35555555433 333444556667777777665443221 11123344
Q ss_pred CCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccC
Q 038552 175 LKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNL 254 (659)
Q Consensus 175 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 254 (659)
...+..+.+...... .....+..+..|+.+.+..+- . .+......-...|+.+.+..+ ++......+.++
T Consensus 193 ~~~~~~~~~~~~~~~-------i~~~~f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~ 262 (379)
T 4h09_A 193 AKTGTEFTIPSTVKT-------VTAYGFSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC 262 (379)
T ss_dssp TCCCSEEECCTTCCE-------ECTTTTTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC
T ss_pred cccccccccccceeE-------Eeecccccccccceeeeccce-e-EEccccccCCccceEEEcCCC-ccEeCcccccee
Confidence 455555554432111 122334556677777665442 1 122222222236777777654 443445667888
Q ss_pred CCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeC
Q 038552 255 VNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNA 334 (659)
Q Consensus 255 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 334 (659)
.+|+.+.+..+ +.......|.++.+|+.+.+.++.+......+|.+|++|+.+.+..+ ++.....+|.+|.+|+.+.+
T Consensus 263 ~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 263 TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 89999988643 54445567889999999999988887667788999999999999754 55455678999999999988
Q ss_pred CCc
Q 038552 335 SRN 337 (659)
Q Consensus 335 ~~n 337 (659)
..+
T Consensus 341 p~~ 343 (379)
T 4h09_A 341 PKS 343 (379)
T ss_dssp CTT
T ss_pred CCc
Confidence 754
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=8.6e-10 Score=110.25 Aligned_cols=84 Identities=23% Similarity=0.224 Sum_probs=50.0
Q ss_pred cCCCCceeecCCCcccccCCccc---cCCCCCCeEECCCCCCCCC----CcccccCCCCCCEEECCCCcccccchhhhcC
Q 038552 374 NLKNLVKLDISGNQFSGVIPVTL---SACVSLEYLNISRNFFHGI----IPLSLSSLKSIKEFNVSSNNLSGLIPEFLKN 446 (659)
Q Consensus 374 ~l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 446 (659)
.+++|++|+|++|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 46778888887777764332222 2466777777777777653 2333345677777777777766443333332
Q ss_pred -CCCCCeeeCcCCc
Q 038552 447 -LSFMEFLDLSYNH 459 (659)
Q Consensus 447 -l~~L~~l~l~~n~ 459 (659)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3456666664
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=1.3e-09 Score=109.05 Aligned_cols=182 Identities=18% Similarity=0.160 Sum_probs=106.1
Q ss_pred hhhcCCCCCcEEeccccCCC---------ccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccC
Q 038552 25 EEIGSLLNLQTLAIDFNYLT---------GQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMF 95 (659)
Q Consensus 25 ~~~~~~~~L~~L~ls~~~~~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 95 (659)
.+...+++|+.|.+.+.... +.+...+..+++|+.|+|++|.- -.++. + .+++|++|++..+.+....
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHH
Confidence 34455667777777554221 12445556778888888877631 12222 3 3678888888877765433
Q ss_pred ccccc--CCCCCCEEeccC--cccccc-----ChHHHh-cCCCCCcEEEccCCcCCcccChhcc---CCCCCCEEEccCC
Q 038552 96 PRSIC--NISSLEWIYLPF--NRFSGS-----LPLDIA-VNLPNLKALAIGGNNFFGSIPNSLS---NASNLEILDLTSN 162 (659)
Q Consensus 96 ~~~~~--~l~~L~~L~l~~--n~~~~~-----~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~---~l~~L~~L~l~~n 162 (659)
...+. .+++|++|+|+. +...+. +...+. ..+++|+.|++.+|.+....+..+. .+++|++|+|+.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 33443 678888887753 111111 111111 1467888888888877643333332 4678888888888
Q ss_pred CCcccc----ccccCCCCCCCEEECCCCCCCCCCCCCccccccccC-CCCCcEEEccCCc
Q 038552 163 QLKGKV----SIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTN-CSSLKVISLYANQ 217 (659)
Q Consensus 163 ~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~n~ 217 (659)
.+++.. ...+..+++|+.|+++.|.++. .....+.. + ...++++.++
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d------~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSD------EMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH------HHHHHHHHHC--CSEEECCSBC
T ss_pred CCChHHHHHHHhhcccCCcceEEECCCCcCCH------HHHHHHHHHc--CCEEEecCCc
Confidence 877642 2233456888888888887764 22222221 1 3457777765
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=3.8e-08 Score=88.60 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=73.6
Q ss_pred chhhcCCCCCcEEecccc-CCCcc----ccccccCCCCCcEEEccCCccCcc----cccccCCCCCCCEEEeecCcCCcc
Q 038552 24 PEEIGSLLNLQTLAIDFN-YLTGQ----LPDFVGNLSALKVFYIIGNSLGGK----IPTTLGLLRNLVDLNVGENRFSGM 94 (659)
Q Consensus 24 ~~~~~~~~~L~~L~ls~~-~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~ 94 (659)
...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344566777777777777 66542 344456667777777777776432 223344556777788877777643
Q ss_pred ----CcccccCCCCCCEEec--cCccccccC----hHHHhcCCCCCcEEEccCCcCC
Q 038552 95 ----FPRSICNISSLEWIYL--PFNRFSGSL----PLDIAVNLPNLKALAIGGNNFF 141 (659)
Q Consensus 95 ----~~~~~~~l~~L~~L~l--~~n~~~~~~----~~~~~~~l~~L~~L~l~~n~~~ 141 (659)
+...+...++|++|++ ++|.+...- ...+. ..++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE-KNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH-HCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHH-hCCCcCEEeccCCCCC
Confidence 4455666777888888 667776332 22222 3467888888877764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=5.2e-08 Score=87.70 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=70.4
Q ss_pred ccCcCCCCCCEEeCCCc-ccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccccc----CCcc
Q 038552 321 SSLGNCQILRMFNASRN-KLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV----IPVT 395 (659)
Q Consensus 321 ~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~ 395 (659)
..+...++|++|++++| .+...-... +...+...++|++|+|++|.+.+. +...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~---------------------l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~ 88 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKA---------------------CAEALKTNTYVKKFSIVGTRSNDPVAFALAEM 88 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHH---------------------HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHH---------------------HHHHHHhCCCcCEEECcCCCCChHHHHHHHHH
Confidence 34555677777777777 665221111 112334455666677777766532 2233
Q ss_pred ccCCCCCCeEECCCCCCCCC----CcccccCCCCCCEEEC--CCCccccc----chhhhcCCCCCCeeeCcCCcCc
Q 038552 396 LSACVSLEYLNISRNFFHGI----IPLSLSSLKSIKEFNV--SSNNLSGL----IPEFLKNLSFMEFLDLSYNHFE 461 (659)
Q Consensus 396 ~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l--~~n~l~~~----~~~~l~~l~~L~~l~l~~n~l~ 461 (659)
+...++|++|+|++|.+... +...+...++|+.|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 44556677777777776643 3445666677777777 66777543 3345555677777777777653
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=8.1e-08 Score=90.73 Aligned_cols=80 Identities=21% Similarity=0.310 Sum_probs=55.0
Q ss_pred ccCCCCceeecCCCcccc--cCCccccCCCCCCeEECCCCCCCCCCcccccCCC--CCCEEECCCCcccccch-------
Q 038552 373 GNLKNLVKLDISGNQFSG--VIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLK--SIKEFNVSSNNLSGLIP------- 441 (659)
Q Consensus 373 ~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~------- 441 (659)
.++++|+.|+|++|.+++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457788888888888876 3445566778888888888887754 2233333 78888888888876544
Q ss_pred hhhcCCCCCCeee
Q 038552 442 EFLKNLSFMEFLD 454 (659)
Q Consensus 442 ~~l~~l~~L~~l~ 454 (659)
..+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2356777777775
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=7.9e-08 Score=90.81 Aligned_cols=81 Identities=23% Similarity=0.281 Sum_probs=53.4
Q ss_pred cCCCCCcEEEccCCccCc--ccccccCCCCCCCEEEeecCcCCccCcccccCCC--CCCEEeccCccccccChH------
Q 038552 52 GNLSALKVFYIIGNSLGG--KIPTTLGLLRNLVDLNVGENRFSGMFPRSICNIS--SLEWIYLPFNRFSGSLPL------ 121 (659)
Q Consensus 52 ~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~------ 121 (659)
.++++|+.|+|++|.+.+ .+|..+..+++|++|+|++|.+++. ..+..+. +|++|++++|.+++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456777777777777765 3445566777777777777777654 2333333 788888888887765541
Q ss_pred HHhcCCCCCcEEE
Q 038552 122 DIAVNLPNLKALA 134 (659)
Q Consensus 122 ~~~~~l~~L~~L~ 134 (659)
.+...+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2334678888776
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=5.6e-07 Score=78.51 Aligned_cols=84 Identities=15% Similarity=0.095 Sum_probs=51.2
Q ss_pred CCCceeecCCCcccccCCccccCCCCCCeEECCCCC-CCCCCcccccCC----CCCCEEECCCCc-ccccchhhhcCCCC
Q 038552 376 KNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNF-FHGIIPLSLSSL----KSIKEFNVSSNN-LSGLIPEFLKNLSF 449 (659)
Q Consensus 376 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~~l~~l~~ 449 (659)
..|++|+|++|.+++..-..+..|++|++|+|++|. ++...-..+..+ ++|+.|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356677777776665555556667777777777774 544333334443 357777777764 55443345566677
Q ss_pred CCeeeCcCCc
Q 038552 450 MEFLDLSYNH 459 (659)
Q Consensus 450 L~~l~l~~n~ 459 (659)
|+.|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777664
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=1e-06 Score=76.86 Aligned_cols=91 Identities=9% Similarity=0.096 Sum_probs=70.3
Q ss_pred chhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCc-cCcccccccCCC----CCCCEEEeecCc-CCccCcc
Q 038552 24 PEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS-LGGKIPTTLGLL----RNLVDLNVGENR-FSGMFPR 97 (659)
Q Consensus 24 ~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~ 97 (659)
|.....-..|+.||+++|.++..--..+..+++|++|+|++|. +++..-..+..+ ++|++|++++|. ++..--.
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 4333334579999999999887767778899999999999985 655444556654 479999999985 7765556
Q ss_pred cccCCCCCCEEeccCcc
Q 038552 98 SICNISSLEWIYLPFNR 114 (659)
Q Consensus 98 ~~~~l~~L~~L~l~~n~ 114 (659)
.+..+++|++|++++|.
T Consensus 134 ~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HGGGCTTCCEEEEESCT
T ss_pred HHhcCCCCCEEECCCCC
Confidence 77889999999999885
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.17 E-value=0.00017 Score=64.17 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=44.6
Q ss_pred cccCCCCceeecCCCcccccC----CccccCCCCCCeEECCCCCCCCC----CcccccCCCCCCEEECCCC---cccc--
Q 038552 372 VGNLKNLVKLDISGNQFSGVI----PVTLSACVSLEYLNISRNFFHGI----IPLSLSSLKSIKEFNVSSN---NLSG-- 438 (659)
Q Consensus 372 l~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n---~l~~-- 438 (659)
+..-+.|++|+|++|++.+.. .+.+..-+.|++|+|++|.|... +..++..-+.|+.|+|++| .+..
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 344455666666666664321 22233445666666666666533 2234445556666666654 2221
Q ss_pred --cchhhhcCCCCCCeeeCcCC
Q 038552 439 --LIPEFLKNLSFMEFLDLSYN 458 (659)
Q Consensus 439 --~~~~~l~~l~~L~~l~l~~n 458 (659)
.+.+.+..-++|+.|+++.|
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHhCCCcCeEeccCC
Confidence 13344555566666666544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.14 E-value=0.00022 Score=63.41 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=41.5
Q ss_pred cCCCCCcEEecccc-CCCcc----ccccccCCCCCcEEEccCCccCcc----cccccCCCCCCCEEEeecCcCCcc----
Q 038552 28 GSLLNLQTLAIDFN-YLTGQ----LPDFVGNLSALKVFYIIGNSLGGK----IPTTLGLLRNLVDLNVGENRFSGM---- 94 (659)
Q Consensus 28 ~~~~~L~~L~ls~~-~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~---- 94 (659)
.+-+.|+.|+|+++ .+... +.+++...+.|+.|+|++|.+... +...+..-+.|++|+|+.|.+...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455555555553 44321 334445555566666665555321 112233345566666666665432
Q ss_pred CcccccCCCCCCEEeccCc
Q 038552 95 FPRSICNISSLEWIYLPFN 113 (659)
Q Consensus 95 ~~~~~~~l~~L~~L~l~~n 113 (659)
+..++..-+.|++|+|+++
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 2233444455666666543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.93 E-value=0.0016 Score=54.03 Aligned_cols=60 Identities=20% Similarity=0.337 Sum_probs=37.3
Q ss_pred eEECCCCCCC-CCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCC
Q 038552 404 YLNISRNFFH-GIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVP 465 (659)
Q Consensus 404 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p 465 (659)
.++.+++.++ ..+|..+. ++|+.|+|++|.|+...+..|..+++|+.|++++|++.+.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 5566666654 23443322 357777777777776656666777777777777777766543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.31 E-value=0.0072 Score=49.99 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=39.2
Q ss_pred eeecCCCccc-ccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCccc
Q 038552 380 KLDISGNQFS-GVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLS 437 (659)
Q Consensus 380 ~L~L~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 437 (659)
.++.+++.++ ..+|..+. ++|++|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 23443322 36788888888888776777788888888888888774
No 165
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=95.65 E-value=0.0088 Score=58.78 Aligned_cols=64 Identities=28% Similarity=0.467 Sum_probs=49.9
Q ss_pred CCChHHHHHHHhccc-cccccccccchhhhccccchhhhhHHHHHHHHHHHHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552 573 GLTLHEYAKMALQEK-VMEIIDPSLLMDVIENNSKIREDRRAKLEECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHT 650 (659)
Q Consensus 573 ~~~l~~~~~~~~~~~-~~~i~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~ 650 (659)
...+.+|++....+. ..+++++.+...... ++...+.++...|.+.+|.+||+|.+|+++|++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~ 309 (326)
T 3uim_A 245 DVMLLDWVKGLLKEKKLEALVDVDLQGNYKD--------------EEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309 (326)
T ss_dssp CSBHHHHHTTTTSSCCSTTSSCTTCTTSCCH--------------HHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred chhHHHHHHHHhhchhhhhhcChhhccccCH--------------HHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence 346778888777765 667777777554443 5566788999999999999999999999999753
No 166
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=95.58 E-value=0.014 Score=56.51 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=32.4
Q ss_pred HHHHHHHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 617 ECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 617 ~~~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
++...+.++...|.+.+|.+||||.||+++|+.+++.
T Consensus 262 ~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 262 EALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp HHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence 4555678899999999999999999999999998753
No 167
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=95.44 E-value=0.025 Score=55.35 Aligned_cols=64 Identities=28% Similarity=0.316 Sum_probs=46.3
Q ss_pred ChHHHHHHHhccc-cccccccccchhhhccccchhhhhHHHHHHHHHHHHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 575 TLHEYAKMALQEK-VMEIIDPSLLMDVIENNSKIREDRRAKLEECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 575 ~l~~~~~~~~~~~-~~~i~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
....|+......+ ..+++|+.+...... +....+.++...|.+.+|.+||+|.+|++.|+.+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~ 315 (321)
T 2qkw_B 251 NLAEWAVESHNNGQLEQIVDPNLADKIRP--------------ESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR 315 (321)
T ss_dssp CHHHHTHHHHTTTCCCSSSSSSCTTCSCH--------------HHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccHHHhcChhhccccCH--------------HHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence 4555655554444 567777776543332 445567788889999999999999999999998764
No 168
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=94.03 E-value=0.036 Score=53.53 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=29.9
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFL 655 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~ 655 (659)
+.++...|.+.+|.+||||.||+.+|+.+++.+.
T Consensus 270 l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp 303 (307)
T 3omv_A 270 MKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp HHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCC
Confidence 4567788999999999999999999999987653
No 169
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=93.78 E-value=0.043 Score=53.67 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=28.4
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||||.||+.+|+.++++
T Consensus 289 ~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 289 VYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp HHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence 45677889999999999999999999999764
No 170
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=92.43 E-value=0.091 Score=50.54 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=28.1
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||+|.+|+.+|+.+.++
T Consensus 259 ~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 259 VYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence 45677889999999999999999999988753
No 171
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=91.52 E-value=0.093 Score=50.70 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=25.5
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHT 650 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~ 650 (659)
+.++...|.+.+|.+||+|.||+..|++.
T Consensus 276 ~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 276 VYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 55777899999999999999999999753
No 172
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=91.18 E-value=0.23 Score=47.86 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=29.2
Q ss_pred HHHHHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 619 LNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 619 ~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
...+.++...|.+.+|.+||+|.+|+.+|+.++.
T Consensus 273 ~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 273 VEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp HHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 3356778889999999999999999999998864
No 173
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=90.90 E-value=0.18 Score=49.09 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=30.6
Q ss_pred HHHHHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 619 LNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 619 ~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
...+.++...|.+.+|.+||+|.+|+++|+.+++.
T Consensus 285 ~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 285 MAMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp HHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 34567888899999999999999999999999863
No 174
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=90.56 E-value=0.19 Score=49.06 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=30.1
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFL 655 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~ 655 (659)
+.++...|.+.+|.+||++.+|+.+|+.+++.+.
T Consensus 292 l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l~ 325 (326)
T 2w1i_A 292 IYMIMTECWNNNVNQRPSFRDLALRVDQIRDQMA 325 (326)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHhc
Confidence 4566778999999999999999999999998764
No 175
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=90.42 E-value=0.17 Score=48.46 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=28.7
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESF 654 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~ 654 (659)
+.++...|.+.+|.+||++.+|+.+|+.+++.+
T Consensus 261 l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l 293 (295)
T 3ugc_A 261 IYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM 293 (295)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence 456677899999999999999999999998754
No 176
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=89.48 E-value=0.24 Score=48.85 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=27.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||||.+|++.|+.+-++
T Consensus 317 ~~~li~~c~~~dP~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 317 MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcChhHCcCHHHHHHHHHHHHHH
Confidence 34566789999999999999999999887653
No 177
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=89.35 E-value=0.29 Score=48.01 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=32.1
Q ss_pred HHHHHHHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 617 ECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 617 ~~~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
++...+.++...|.+.+|.+||+|.+|++.|+.+.+.
T Consensus 301 ~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~ 337 (342)
T 1b6c_B 301 EALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 337 (342)
T ss_dssp HHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence 4445677888999999999999999999999999764
No 178
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=89.23 E-value=0.18 Score=48.55 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=30.4
Q ss_pred HHHHHHHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 617 ECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 617 ~~~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
++...+.++...|.+.+|.+||++.+|+++|+.+.+
T Consensus 262 ~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~ 297 (303)
T 3gxj_A 262 EALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp HHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CC
T ss_pred hhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhh
Confidence 444567788999999999999999999999998764
No 179
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=89.21 E-value=0.29 Score=47.57 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=30.6
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhhc
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFLG 656 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~~ 656 (659)
+.++...|.+.+|.+||++.+|+.+|+.+.+.+.+
T Consensus 280 l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~ 314 (318)
T 3lxp_A 280 VYHLMKNCWETEASFRPTFENLIPILKTVHEKYQG 314 (318)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhcc
Confidence 45666789999999999999999999999887654
No 180
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=88.47 E-value=0.29 Score=47.23 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=29.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFL 655 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~ 655 (659)
+.++...|.+.+|.+||++.++++.|+.++....
T Consensus 252 l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~ 285 (310)
T 3s95_A 252 FFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLA 285 (310)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHHHhcc
Confidence 4466678999999999999999999999987543
No 181
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=88.42 E-value=0.36 Score=47.16 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=31.5
Q ss_pred HHHHHHHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 617 ECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 617 ~~~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
++...+.++...|.+.+|.+||++.+|++.|+.+.+.
T Consensus 296 ~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~ 332 (337)
T 3mdy_A 296 ECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSES 332 (337)
T ss_dssp HHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhh
Confidence 3344567888899999999999999999999998764
No 182
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=88.40 E-value=0.34 Score=46.42 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=28.2
Q ss_pred HHHHHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552 619 LNAIIRTGVLCSMESPFERMDMRDIVAKLCHT 650 (659)
Q Consensus 619 ~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~ 650 (659)
...+.++...|.+.+|.+||+|.+|+++|+.+
T Consensus 269 ~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 269 LTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp HHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 34567888899999999999999999999875
No 183
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=87.34 E-value=0.44 Score=45.62 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=30.8
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhhcC
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFLGR 657 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~~~ 657 (659)
+.++...|.+.+|.+||++.+++++|+.+...+.+.
T Consensus 261 l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~~ 296 (298)
T 3f66_A 261 LYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 296 (298)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCCS
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhccC
Confidence 445667899999999999999999999998876654
No 184
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=86.83 E-value=0.49 Score=45.20 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=31.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhhcC
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFLGR 657 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~~~ 657 (659)
+.++...|.+.+|.+||++.+++.+|+.+.+.+.+.
T Consensus 257 l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~~ 292 (298)
T 3pls_A 257 LYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGD 292 (298)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhcc
Confidence 446667899999999999999999999998876654
No 185
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=86.77 E-value=0.44 Score=47.47 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=28.7
Q ss_pred HHHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 621 AIIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
.+.++...|.+.+|.+||+|.+|+.+|+.+...
T Consensus 278 ~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 278 ALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 356777889999999999999999999988653
No 186
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=86.75 E-value=0.48 Score=46.26 Aligned_cols=36 Identities=8% Similarity=0.036 Sum_probs=31.3
Q ss_pred HHHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhhc
Q 038552 621 AIIRTGVLCSMESPFERMDMRDIVAKLCHTRESFLG 656 (659)
Q Consensus 621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~~ 656 (659)
.+.++...|.+.+|.+||++.||+++|+.+.+.+..
T Consensus 287 ~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~ 322 (336)
T 3g2f_A 287 SLKETIEDCWDQDAEARLTAQXAEERMAELMMIWER 322 (336)
T ss_dssp HHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHh
Confidence 466777889999999999999999999999876643
No 187
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=86.71 E-value=0.46 Score=45.80 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=28.9
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFL 655 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~ 655 (659)
+.++...|.+.+|.+||+|.+|+++|+.++..+.
T Consensus 233 l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 266 (307)
T 2eva_A 233 IESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFP 266 (307)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhcc
Confidence 3456678999999999999999999999986553
No 188
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=86.57 E-value=0.46 Score=47.46 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=28.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||+|.+|+.+|+.+++.
T Consensus 344 l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 344 VFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 44566789999999999999999999999864
No 189
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=86.49 E-value=0.44 Score=46.45 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=27.4
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+..+...|.+.+|.+||+|.+|+.+|+.+..
T Consensus 248 ~~~li~~~l~~~p~~Rps~~ell~~l~~~~~ 278 (327)
T 3poz_A 248 VYMIMVKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp HHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 5577788999999999999999999988754
No 190
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=86.04 E-value=0.51 Score=44.22 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=28.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||++.+++.+|+.+++.
T Consensus 234 l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 234 VYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 44667789999999999999999999998763
No 191
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=85.95 E-value=0.48 Score=46.11 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=28.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||+|.+|+.+|+.+...
T Consensus 283 l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~ 314 (325)
T 3kul_A 283 LHQLMLDCWHKDRAQRPRFSQIVSVLDALIRS 314 (325)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHHhC
Confidence 45677889999999999999999999998754
No 192
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=85.92 E-value=0.52 Score=44.28 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.7
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||++.++++.|+.+++.
T Consensus 236 ~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 236 VYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 44566789999999999999999999998764
No 193
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=84.60 E-value=0.71 Score=44.46 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=28.5
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESF 654 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~ 654 (659)
+.++...|.+.+|.+||++.+|+.+|+.++...
T Consensus 267 l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~ 299 (310)
T 2wqm_A 267 LRQLVNMCINPDPEKRPDVTYVYDVAKRMHACT 299 (310)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhh
Confidence 445667799999999999999999999998654
No 194
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=84.42 E-value=0.69 Score=43.67 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=27.6
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++-..|.+.+|.+||++.+++.+|+.++..
T Consensus 243 l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~ 274 (278)
T 1byg_A 243 VYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH 274 (278)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence 34555679999999999999999999999864
No 195
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=84.23 E-value=0.68 Score=45.69 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=27.5
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||+|.+|+..|+.+.++
T Consensus 325 l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 356 (359)
T 3vhe_A 325 MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 356 (359)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence 34566789999999999999999999988754
No 196
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=83.94 E-value=0.75 Score=44.27 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=29.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFL 655 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~ 655 (659)
+.++...|.+.+|.+||++.+|+..|+.++..+.
T Consensus 270 l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~p 303 (307)
T 3lb7_A 270 MKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp HHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhcc
Confidence 4466678999999999999999999999987653
No 197
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=83.68 E-value=0.42 Score=44.89 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=27.1
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+.++-..|.+.+|.+||++.+|++.|+.+++
T Consensus 234 l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (268)
T 3sxs_A 234 IYQIMYSCWHELPEKRPTFQQLLSSIEPLRE 264 (268)
T ss_dssp HHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHhhh
Confidence 4466678999999999999999999998865
No 198
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=83.34 E-value=0.87 Score=45.46 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=28.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESF 654 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~ 654 (659)
+.++...|.+.+|.+||+|.+|++.|+++....
T Consensus 322 l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 354 (382)
T 3tt0_A 322 LYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALT 354 (382)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence 446667899999999999999999999987543
No 199
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=83.34 E-value=0.85 Score=45.40 Aligned_cols=35 Identities=14% Similarity=0.315 Sum_probs=29.7
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhhc
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFLG 656 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~~ 656 (659)
+.++-..|.+.+|.+||++.+|++.|+.+...+.+
T Consensus 325 l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~ 359 (373)
T 3c1x_A 325 LYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG 359 (373)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhccc
Confidence 44566789999999999999999999999876554
No 200
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=83.01 E-value=0.77 Score=44.72 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=28.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESF 654 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~ 654 (659)
+..+...|.+.+|.+||++.+|+..|+.+....
T Consensus 296 l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~ 328 (333)
T 2i1m_A 296 IYSIMQACWALEPTHRPTFQQICSFLQEQAQED 328 (333)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccChhhCcCHHHHHHHHHHHHHhh
Confidence 445667899999999999999999999887543
No 201
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=82.98 E-value=0.63 Score=43.64 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=26.4
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+.++...|.+.+|.+||++.+|++.|+.+++
T Consensus 240 ~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 240 VSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 3455567999999999999999999998864
No 202
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=82.64 E-value=0.86 Score=43.40 Aligned_cols=32 Identities=6% Similarity=-0.083 Sum_probs=27.9
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||++.+|++.|+.+...
T Consensus 250 l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 281 (296)
T 3uzp_A 250 FATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 281 (296)
T ss_dssp HHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHh
Confidence 45667789999999999999999999988754
No 203
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=82.53 E-value=1 Score=43.85 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=27.7
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||+|.+|+.+|+.+...
T Consensus 279 l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~ 310 (333)
T 1mqb_A 279 IYQLMMQCWQQERARRPKFADIVSILDKLIRA 310 (333)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 45677789999999999999999999987653
No 204
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=82.51 E-value=0.97 Score=42.70 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=27.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+.++-..|.+.+|.+||++.+|+..|+.+.+
T Consensus 243 l~~li~~~l~~~p~~Rps~~ell~~L~~~~~ 273 (281)
T 3cc6_A 243 LYTLMTRCWDYDPSDRPRFTELVCSLSDVYQ 273 (281)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCchhCcCHHHHHHHHHHHHH
Confidence 4456678999999999999999999998865
No 205
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=82.43 E-value=0.94 Score=42.71 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=28.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESF 654 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~ 654 (659)
+.++...|.+.+|.+||+|.+++.+|+.+....
T Consensus 239 l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 271 (279)
T 1qpc_A 239 LYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 271 (279)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccChhhCCCHHHHHHHHHHHHHhc
Confidence 446667899999999999999999999886543
No 206
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=82.35 E-value=0.65 Score=43.63 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=24.5
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHT 650 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~ 650 (659)
+.++...|.+.+|.+||++.+|++.|+.+
T Consensus 243 ~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 243 FAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred HHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 45666789999999999999999999753
No 207
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=82.32 E-value=0.72 Score=44.84 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=25.9
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+.++...|.+.+|.+||+|.+|+++|+.+..
T Consensus 273 l~~li~~~l~~dP~~Rps~~ell~~L~~~~~ 303 (327)
T 3lxl_A 273 VHELMKLCWAPSPQDRPSFSALGPQLDMLWS 303 (327)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHC--
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 4566778999999999999999999988754
No 208
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=82.00 E-value=0.67 Score=45.35 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=27.5
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFL 655 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~ 655 (659)
+.++...|.+.+|.+||++.+|+.+|+.+.+.+.
T Consensus 305 l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~ 338 (343)
T 1luf_A 305 LYNLMRLCWSKLPADRPSFCSIHRILQRMCERAE 338 (343)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC---
T ss_pred HHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhh
Confidence 4566678999999999999999999999876543
No 209
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=81.37 E-value=0.89 Score=43.22 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=26.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTR 651 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~ 651 (659)
+.++...|.+.+|.+||++.+|+++|+.+.
T Consensus 258 l~~li~~~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 258 MKRLMAECLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence 456667899999999999999999998764
No 210
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=81.33 E-value=0.99 Score=43.16 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=26.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTR 651 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~ 651 (659)
+.++...|.+.+|.+||++.+|+++|+.+.
T Consensus 272 l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 272 VYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 456777899999999999999999998764
No 211
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=81.30 E-value=1 Score=42.81 Aligned_cols=32 Identities=6% Similarity=-0.083 Sum_probs=27.6
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||++.+|+++|+.+.+.
T Consensus 250 l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~ 281 (296)
T 4hgt_A 250 FATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 281 (296)
T ss_dssp HHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 45666789999999999999999999988754
No 212
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=80.94 E-value=1.1 Score=43.00 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=28.4
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESF 654 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~ 654 (659)
+.++...|.+.+|.+||++.+++..|+.+.+..
T Consensus 278 l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~l 310 (313)
T 3brb_A 278 LYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL 310 (313)
T ss_dssp HHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence 456667899999999999999999999987643
No 213
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=80.82 E-value=1.2 Score=42.02 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=27.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||++.+|+..|+.+.+.
T Consensus 246 l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 277 (281)
T 1mp8_A 246 LYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 277 (281)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 34566789999999999999999999988653
No 214
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=80.74 E-value=1.3 Score=41.89 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=27.1
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+.++...|.+.+|.+||++.++++.|..+.+
T Consensus 250 l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~ 280 (283)
T 3gen_A 250 VYTIMYSCWHEKADERPTFKILLSNILDVMD 280 (283)
T ss_dssp HHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence 4566778999999999999999999988764
No 215
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=80.39 E-value=1.2 Score=42.90 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=27.4
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||++.+|+..|+.+.++
T Consensus 280 l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 311 (316)
T 2xir_A 280 MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 311 (316)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence 34556779999999999999999999988754
No 216
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=80.36 E-value=1.3 Score=42.12 Aligned_cols=31 Identities=13% Similarity=0.018 Sum_probs=26.7
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+..+...|.+.+|.+||++.+|+.+|+.+-.
T Consensus 249 l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 279 (291)
T 1xbb_A 249 MYDLMNLCWTYDVENRPGFAAVELRLRNYYY 279 (291)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 4566778999999999999999999987744
No 217
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=79.75 E-value=1 Score=42.92 Aligned_cols=32 Identities=6% Similarity=-0.142 Sum_probs=27.7
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||++.+|++.|+.+.+.
T Consensus 253 l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~ 284 (298)
T 1csn_A 253 FYKYMHYARNLAFDATPDYDYLQGLFSKVLER 284 (298)
T ss_dssp HHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccCCCHHHHHHHHHHHHHh
Confidence 45666789999999999999999999988764
No 218
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=79.68 E-value=1.4 Score=41.73 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=26.6
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+.++...|.+.+|.+||++.+|+++|+.+..
T Consensus 241 l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~ 271 (288)
T 3kfa_A 241 VYELMRACWQWNPSDRPSFAEIHQAFETMFQ 271 (288)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChhhCcCHHHHHHHHHHHHH
Confidence 4466678999999999999999999987754
No 219
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=79.58 E-value=1.4 Score=42.35 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=27.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+..+...|.+.+|.+||++.+|+++|+.+.+.
T Consensus 277 l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 308 (313)
T 1t46_A 277 MYDIMKTCWDADPLKRPTFKQIVQLIEKQISE 308 (313)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence 44566789999999999999999999887653
No 220
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=79.32 E-value=1.4 Score=42.39 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=26.8
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+.++...|.+.+|.+||++.+|++.|+.+..
T Consensus 281 ~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~ 311 (314)
T 2ivs_A 281 MYRLMLQCWKQEPDKRPVFADISKDLEKMMV 311 (314)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 4566678999999999999999999988754
No 221
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=79.03 E-value=1.2 Score=43.01 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=26.7
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++-..|.+.+|.+||++.+|+++|+.+.+.
T Consensus 268 l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~ 299 (309)
T 3p86_A 268 VAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS 299 (309)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 34566679999999999999999999988654
No 222
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=78.99 E-value=1.2 Score=42.33 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=26.4
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||++.+|+..|+.++..
T Consensus 254 l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 254 IYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred HHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 44666789999999999999999999887653
No 223
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=78.69 E-value=1.4 Score=43.54 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=27.5
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+.++...|.+.+|.+||++.+|++.|+.+..
T Consensus 315 l~~li~~~l~~dP~~Rps~~eil~~l~~~~~ 345 (367)
T 3l9p_A 315 VYRIMTQCWQHQPEDRPNFAIILERIEYCTQ 345 (367)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHhHCcCHHHHHHHHHHHhh
Confidence 4567788999999999999999999998875
No 224
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=78.54 E-value=1.4 Score=43.23 Aligned_cols=32 Identities=6% Similarity=-0.137 Sum_probs=27.4
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||++.+|+++|+.+.+.
T Consensus 306 l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~ 337 (352)
T 2jii_A 306 LQKYLKVVMALTYEEKPPYAMLRNNLEALLQD 337 (352)
T ss_dssp HHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChhhCCCHHHHHHHHHHHHHh
Confidence 44566789999999999999999999988754
No 225
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=78.32 E-value=1 Score=42.71 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=24.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCH 649 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~ 649 (659)
+.++-..|.+.+|.+||++.+|+++|+.
T Consensus 259 l~~li~~~l~~dp~~Rps~~~ll~~L~~ 286 (287)
T 4f0f_A 259 LRNVIELCWSGDPKKRPHFSYIVKELSE 286 (287)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred HHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence 4466677999999999999999999975
No 226
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=78.25 E-value=1.7 Score=27.33 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=5.0
Q ss_pred HHHHHHhhhcc
Q 038552 526 LTIIYARRRRF 536 (659)
Q Consensus 526 ~~~~~~~~~~~ 536 (659)
.+++++|||+.
T Consensus 30 ~~~~~~RRr~~ 40 (44)
T 2ks1_B 30 GIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHhhhhHh
Confidence 34444554443
No 227
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=78.15 E-value=1.9 Score=40.86 Aligned_cols=33 Identities=12% Similarity=0.030 Sum_probs=28.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESF 654 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~ 654 (659)
+.++...|.+.+|.+||++.+|+..|+.+..+.
T Consensus 242 l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 274 (287)
T 1u59_A 242 LYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL 274 (287)
T ss_dssp HHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence 446667899999999999999999999887643
No 228
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=78.02 E-value=1.4 Score=42.72 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=26.9
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+.++...|.+.+|.+||++.+++.+|+.+..
T Consensus 248 l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 278 (327)
T 3lzb_A 248 VYMIMRKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 4456678999999999999999999998863
No 229
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=77.90 E-value=1.6 Score=42.49 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=27.5
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||++.+|+..|+.+...
T Consensus 288 l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~ 319 (334)
T 2pvf_A 288 LYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL 319 (334)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 44566789999999999999999999988653
No 230
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=77.64 E-value=1.5 Score=44.90 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=27.5
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++-..|.+.+|.+||++.+++..|+.++..
T Consensus 415 l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 415 VYDVMKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 34555679999999999999999999999864
No 231
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=77.10 E-value=0.79 Score=44.27 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=25.6
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+..+...|.+.+|.+||++.+|+.+|+.+++.
T Consensus 272 l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~ 303 (319)
T 2y4i_B 272 ISDILLFCWAFEQEERPTFTKLMDMLEKLPKR 303 (319)
T ss_dssp HHHHHHHHHCSSTTTSCCHHHHHHHHTTC---
T ss_pred HHHHHHHHhcCChhhCcCHHHHHHHHHHHHHh
Confidence 44666789999999999999999999887653
No 232
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=76.91 E-value=1.9 Score=41.62 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=27.4
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+..+...|.+.+|.+||++.++++.|+.+..
T Consensus 268 l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~ 298 (323)
T 3qup_A 268 VYDLMYQCWSADPKQRPSFTCLRMELENILG 298 (323)
T ss_dssp HHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 4567788999999999999999999998864
No 233
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=76.46 E-value=1.3 Score=42.71 Aligned_cols=32 Identities=9% Similarity=0.056 Sum_probs=27.4
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++-..|.+.+|.+||++.+|+..|+.++..
T Consensus 276 l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~ 307 (317)
T 2buj_A 276 LWQLLNSMMTVDPHQRPHIPLLLSQLEALQPP 307 (317)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhcChhhCCCHHHHHHHhhhcCCC
Confidence 44666779999999999999999999988653
No 234
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=76.45 E-value=1.8 Score=42.00 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=27.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+.++...|.+.+|.+||++.+|+..|..++.
T Consensus 274 l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~ 304 (327)
T 2yfx_A 274 VYRIMTQCWQHQPEDRPNFAIILERIEYCTQ 304 (327)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChhhCcCHHHHHHHHHHHhc
Confidence 4466678999999999999999999998865
No 235
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=76.37 E-value=1.5 Score=41.41 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=25.6
Q ss_pred HHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 624 RTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 624 ~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
.+-..|.+.+|.+||++.+++..|..++..
T Consensus 246 ~li~~~l~~dp~~Rps~~e~l~~l~~~~~~ 275 (284)
T 2a19_B 246 TLLQKLLSKKPEDRPNTSEILRTLTVWKKS 275 (284)
T ss_dssp HHHHHHTCSSGGGSCCHHHHHHHHHHHTC-
T ss_pred HHHHHHccCChhhCcCHHHHHHHHHHHhhC
Confidence 455679999999999999999999988754
No 236
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=76.15 E-value=1.9 Score=42.75 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=27.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||++.|+++.|+.+...
T Consensus 334 l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~ 365 (370)
T 2psq_A 334 LYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL 365 (370)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 44566689999999999999999999988753
No 237
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=75.67 E-value=1.4 Score=42.78 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=25.3
Q ss_pred HHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVAKLCHTR 651 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~~L~~~~ 651 (659)
..+...|.+.+|.+||+|.+|+..|+.+.
T Consensus 247 ~~li~~~l~~dp~~Rps~~el~~~l~~~~ 275 (325)
T 3kex_A 247 YMVMVKCWMIDENIRPTFKELANEFTRMA 275 (325)
T ss_dssp THHHHHHTCSCTTTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 35566799999999999999999998875
No 238
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=75.38 E-value=1.3 Score=27.69 Aligned_cols=10 Identities=30% Similarity=0.252 Sum_probs=4.5
Q ss_pred HHHHHhhhcc
Q 038552 527 TIIYARRRRF 536 (659)
Q Consensus 527 ~~~~~~~~~~ 536 (659)
+++|+|||+.
T Consensus 31 ~~~~~RRR~~ 40 (44)
T 2jwa_A 31 FGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHCS
T ss_pred HHhheehhhh
Confidence 3444444443
No 239
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=74.72 E-value=1.4 Score=45.14 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=26.7
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+.++...|.+.+|.+||+|.+|+.+|+.+..
T Consensus 414 l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~ 444 (454)
T 1qcf_A 414 LYNIMMRCWKNRPEERPTFEYIQSVLDDFYT 444 (454)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHTSSS
T ss_pred HHHHHHHHccCChhHCcCHHHHHHHHHHHHh
Confidence 4566778999999999999999999987753
No 240
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=73.50 E-value=1.2 Score=42.15 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=25.0
Q ss_pred HHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
.++...|.+.+|.+||++.+|++.|+.+-.
T Consensus 246 ~~li~~~l~~dp~~Rps~~~ll~~l~~l~~ 275 (289)
T 4fvq_A 246 ANLINNCMDYEPDHRPSFRAIIRDLNSLFT 275 (289)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred HHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence 355567999999999999999999987643
No 241
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=73.29 E-value=1.6 Score=45.32 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=25.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHT 650 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~ 650 (659)
+.++...|.+.+|.+||+|.+|+++|+.+
T Consensus 448 l~~li~~cl~~dP~~RPs~~el~~~L~~~ 476 (495)
T 1opk_A 448 VYELMRACWQWNPSDRPSFAEIHQAFETM 476 (495)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 44566789999999999999999999865
No 242
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=72.71 E-value=2.6 Score=40.73 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=27.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+..+...|.+.+|.+||++.+++..|..+.+.
T Consensus 270 l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 301 (327)
T 1fvr_A 270 VYDLMRQCWREKPYERPSFAQILVSLNRMLEE 301 (327)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 44566789999999999999999999988653
No 243
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=72.62 E-value=2.1 Score=41.47 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=26.7
Q ss_pred HHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 623 IRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
..+...|.+.+|.+||++.+|++.|..+...
T Consensus 279 ~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~ 309 (337)
T 3ll6_A 279 HSLIRAMLQVNPEERLSIAEVVHQLQEIAAA 309 (337)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 3556679999999999999999999988754
No 244
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.11 E-value=8.3 Score=29.55 Aligned_cols=47 Identities=6% Similarity=0.111 Sum_probs=28.0
Q ss_pred cccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCC
Q 038552 387 QFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSN 434 (659)
Q Consensus 387 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 434 (659)
.++.+...+|.+|++|+.+.|..+ ++.+...+|.+|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344444556666777777766654 33344556677777777666543
No 245
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=71.91 E-value=2.5 Score=41.17 Aligned_cols=31 Identities=13% Similarity=0.008 Sum_probs=26.1
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+..+...|.+.+|.+||++.+|+..|+.+..
T Consensus 304 l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~ 334 (344)
T 1rjb_A 304 IYIIMQSCWAFDSRKRPSFPNLTSFLGCQLA 334 (344)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCchhCcCHHHHHHHHHHHHH
Confidence 4456678999999999999999999987754
No 246
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=71.61 E-value=2.8 Score=41.38 Aligned_cols=32 Identities=9% Similarity=-0.039 Sum_probs=27.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||+|.+++++|+.+.+.
T Consensus 299 ~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~ 330 (364)
T 3op5_A 299 IAKYMETVKLLDYTEKPLYENLRDILLQGLKA 330 (364)
T ss_dssp HHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 44566679999999999999999999887653
No 247
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=69.80 E-value=4.2 Score=43.46 Aligned_cols=34 Identities=12% Similarity=0.029 Sum_probs=28.7
Q ss_pred HHHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhh
Q 038552 621 AIIRTGVLCSMESPFERMDMRDIVAKLCHTRESF 654 (659)
Q Consensus 621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~ 654 (659)
.+.++...|.+.+|.+||+|.+|+.+|+.+....
T Consensus 567 ~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~ 600 (613)
T 2ozo_A 567 ELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL 600 (613)
T ss_dssp HHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHh
Confidence 3556778899999999999999999999876543
No 248
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=69.76 E-value=2.3 Score=43.56 Aligned_cols=30 Identities=20% Similarity=0.083 Sum_probs=26.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTR 651 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~ 651 (659)
+.++...|.+.+|.+||+|.+|+.+|+.+.
T Consensus 410 l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~ 439 (452)
T 1fmk_A 410 LHDLMCQCWRKEPEERPTFEYLQAFLEDYF 439 (452)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence 445667899999999999999999998764
No 249
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=67.30 E-value=12 Score=28.52 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=18.8
Q ss_pred ccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeec
Q 038552 47 LPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGE 88 (659)
Q Consensus 47 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 88 (659)
-..+|.++.+|+.+.+..+ ++..-...|.+|.+|+.+.+..
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3344445555555554432 2233334455555555555543
No 250
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=67.29 E-value=2.7 Score=40.47 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=25.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTR 651 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~ 651 (659)
+.++-..|.+.+|.+||++.+|+..|+.+.
T Consensus 269 l~~li~~~l~~dp~~Rps~~e~l~~L~~~~ 298 (322)
T 1p4o_A 269 LFELMRMCWQYNPKMRPSFLEIISSIKEEM 298 (322)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHGGGS
T ss_pred HHHHHHHHcCCCcccCcCHHHHHHHHHHhh
Confidence 345666799999999999999999997663
No 251
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=66.35 E-value=2.2 Score=41.72 Aligned_cols=30 Identities=13% Similarity=-0.052 Sum_probs=25.1
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTR 651 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~ 651 (659)
+.++-..|.+.+|.+||+|.+|+++|+.+.
T Consensus 298 l~~li~~~l~~dp~~Rps~~~l~~~L~~~~ 327 (345)
T 2v62_A 298 IAQFLVCAHSLAYDEKPNYQALKKILNPHG 327 (345)
T ss_dssp HHHHHHHHHTCCTTCCCCHHHHHHHHCTTC
T ss_pred HHHHHHHHhhcCcccCCCHHHHHHHHhccC
Confidence 445556899999999999999999997654
No 252
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=66.17 E-value=3.9 Score=42.12 Aligned_cols=31 Identities=6% Similarity=-0.154 Sum_probs=27.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+..+...|.+.+|.+||+|.+|+.+|+.+..
T Consensus 248 l~~li~~cl~~dP~~RPs~~el~~~L~~l~~ 278 (483)
T 3sv0_A 248 FASYFHYCRSLRFDDKPDYSYLKRLFRDLFI 278 (483)
T ss_dssp HHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence 4567778999999999999999999988753
No 253
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=65.04 E-value=5.2 Score=42.93 Aligned_cols=32 Identities=13% Similarity=0.023 Sum_probs=27.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
+.++...|.+.+|.+||+|.+|+.+|+.+-..
T Consensus 601 l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~ 632 (635)
T 4fl3_A 601 MYDLMNLCWTYDVENRPGFAAVELRLRNYYYD 632 (635)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence 45666789999999999999999999887543
No 254
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=64.97 E-value=7.5 Score=24.35 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=5.9
Q ss_pred HHHHHHHhhhccc
Q 038552 525 CLTIIYARRRRFA 537 (659)
Q Consensus 525 ~~~~~~~~~~~~~ 537 (659)
..+++++|||+++
T Consensus 28 ~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 28 LTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHTTCSS
T ss_pred HHHHHHhhhhhhh
Confidence 3344445554443
No 255
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=63.25 E-value=3.9 Score=39.53 Aligned_cols=33 Identities=9% Similarity=-0.041 Sum_probs=27.7
Q ss_pred HHHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552 621 AIIRTGVLCSMESPFERMDMRDIVAKLCHTRES 653 (659)
Q Consensus 621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~ 653 (659)
.+.++...|.+.+|.+||++.+|++.|+.+.+.
T Consensus 250 ~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~ 282 (330)
T 2izr_A 250 EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 282 (330)
T ss_dssp HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 355666779999999999999999999877643
No 256
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=62.69 E-value=5 Score=43.24 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=27.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+..+...|.+.+|.+||++.+|+.+|+.+.+
T Consensus 621 l~~li~~~l~~dP~~RPs~~el~~~L~~il~ 651 (656)
T 2j0j_A 621 LYSLMTKCWAYDPSRRPRFTELKAQLSTILE 651 (656)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence 4566778999999999999999999998864
No 257
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=61.74 E-value=3.8 Score=42.96 Aligned_cols=30 Identities=20% Similarity=0.083 Sum_probs=25.6
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTR 651 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~ 651 (659)
+.++-..|.+.+|.+||+|.+|+.+|+.+-
T Consensus 493 l~~li~~cl~~dP~~RPt~~~l~~~L~~~~ 522 (535)
T 2h8h_A 493 LHDLMCQCWRKEPEERPTFEYLQAFLEDYF 522 (535)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence 445667899999999999999999998764
No 258
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=53.96 E-value=11 Score=36.40 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=24.0
Q ss_pred HHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 624 RTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 624 ~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
++-..|.+.+|.+|||+.|+.+.|..+..
T Consensus 288 ~li~~~L~~dP~~R~sa~el~~~l~~~l~ 316 (336)
T 4g3f_A 288 QAIQEGLRKEPVHRASAMELRRKVGKALQ 316 (336)
T ss_dssp HHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence 44457999999999999999998876654
No 259
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=52.40 E-value=7.1 Score=37.93 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=20.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+...|.+.+|.+||+|.+|++
T Consensus 250 l~~li~~~L~~dp~~Rpt~~e~l~ 273 (343)
T 3dbq_A 250 LQDVLKCCLKRDPKQRISIPELLA 273 (343)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHcCCChhHCCCHHHHHh
Confidence 345667799999999999999975
No 260
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=51.97 E-value=8.4 Score=36.71 Aligned_cols=30 Identities=13% Similarity=0.009 Sum_probs=25.1
Q ss_pred HHHHhHhcCCCCCcCCC-ChHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERM-DMRDIVAKLCHTR 651 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP-~M~~Vv~~L~~~~ 651 (659)
+..+-..|.+.+|.+|| ++.+++..|+.+-
T Consensus 265 l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l 295 (309)
T 2h34_A 265 FDAVIARGMAKNPEDRYVTCGDLSAAAHAAL 295 (309)
T ss_dssp HHHHHHHHTCSSGGGSCSSHHHHHHHHHHTC
T ss_pred HHHHHHHhccCCHHHHHHhHHHHHHHHHHHH
Confidence 34566789999999999 9999999998653
No 261
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=51.00 E-value=7.6 Score=36.46 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=19.4
Q ss_pred HHHhHhcCCCCCcCCCChHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
..+-..|.+.+|.+||++.||+.
T Consensus 256 ~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 256 VDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp HHHHHHHTCSCTTTSCCHHHHHT
T ss_pred HHHHHHHccCChhhCcCHHHHhc
Confidence 35566799999999999999874
No 262
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=50.50 E-value=8.1 Score=36.76 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.8
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++-..|.+.+|.+|||+.|+++
T Consensus 261 ~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 261 ALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp HHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHccCChhhcCCHHHHhc
Confidence 456777899999999999999975
No 263
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=49.78 E-value=7.4 Score=36.29 Aligned_cols=26 Identities=8% Similarity=0.025 Sum_probs=21.8
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKL 647 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L 647 (659)
+.++-..|.+.+|.+||++.+|+..+
T Consensus 244 l~~li~~~l~~~p~~Rps~~~ll~~~ 269 (279)
T 2w5a_A 244 LNEIITRMLNLKDYHRPSVEEILENP 269 (279)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred HHHHHHHHcCCCcccCCCHHHHHhCh
Confidence 44566789999999999999998765
No 264
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=49.76 E-value=8.3 Score=36.79 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=20.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++...|.+.+|.+||++.++++
T Consensus 281 l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 281 LRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp HHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHcCCChhhCcCHHHHHh
Confidence 445667899999999999999875
No 265
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=49.62 E-value=8.9 Score=35.66 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+...|.+.+|.+||++.+|+.
T Consensus 238 l~~li~~~l~~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 238 VATLLMHMLQVDPLKRATIKDIRE 261 (276)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHccCChhhCCCHHHHHh
Confidence 345667899999999999999876
No 266
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=49.56 E-value=6.3 Score=37.02 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.4
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++...|.+.+|.+||++.+|++
T Consensus 243 ~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 243 FVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHhhcChhhCcCHHHHHh
Confidence 445666899999999999999976
No 267
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=48.35 E-value=8 Score=36.14 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=19.8
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++-..|.+.+|.+||++.++++
T Consensus 256 ~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 256 FTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHhCCCcccCCCHHHHhh
Confidence 345566799999999999999875
No 268
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=47.13 E-value=9.8 Score=36.26 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=19.9
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.+|++
T Consensus 269 l~~li~~~l~~dp~~Rps~~ell~ 292 (313)
T 3cek_A 269 LQDVLKCCLKRDPKQRISIPELLA 292 (313)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHccCCcccCcCHHHHhc
Confidence 345556799999999999999976
No 269
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=46.98 E-value=10 Score=35.74 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=20.5
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++-..|.+.+|.+||++.+++.
T Consensus 260 ~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 260 EKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHHhcCcccCcCHHHHhC
Confidence 346667799999999999999986
No 270
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=46.94 E-value=8.2 Score=36.30 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=20.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++...|.+.+|.+||++.+|+.
T Consensus 259 l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 259 VKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHccCChhhCCCHHHHhh
Confidence 446667899999999999999874
No 271
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=46.86 E-value=7.3 Score=37.46 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.7
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++...|.+.+|.+||++.+|++
T Consensus 262 l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 262 FINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHhhCChhhCcCHHHHHh
Confidence 456667899999999999999976
No 272
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=46.84 E-value=13 Score=34.99 Aligned_cols=30 Identities=7% Similarity=-0.033 Sum_probs=25.7
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+..+-..|.+.+|.+| ++.+++++|+.++.
T Consensus 236 l~~li~~~l~~dP~~R-s~~el~~~L~~~~~ 265 (286)
T 3uqc_A 236 ISAVAARSVQGDGGIR-SASTLLNLMQQATA 265 (286)
T ss_dssp HHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC
T ss_pred HHHHHHHHcccCCccC-CHHHHHHHHHHHhc
Confidence 3456678999999999 99999999998864
No 273
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=46.78 E-value=8.8 Score=36.25 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=20.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++...|.+.+|.+||++.++++
T Consensus 264 ~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 264 FRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp HHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHccCChhhCcCHHHHhh
Confidence 345667799999999999999976
No 274
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=46.21 E-value=9 Score=36.74 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=20.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+...|.+.+|.+||++.+|++
T Consensus 270 ~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 270 CQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHccCChhhCcCHHHHhc
Confidence 345666899999999999999975
No 275
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=46.20 E-value=10 Score=37.71 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=20.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+...|.+.+|.+||+|.||+.
T Consensus 297 ~~~li~~~L~~dP~~Rps~~ell~ 320 (390)
T 2zmd_A 297 LQDVLKCCLKRDPKQRISIPELLA 320 (390)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHcccChhhCCCHHHHhh
Confidence 345666899999999999999975
No 276
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=46.14 E-value=11 Score=35.03 Aligned_cols=31 Identities=13% Similarity=0.027 Sum_probs=24.6
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH--HHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA--KLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~--~L~~~~~ 652 (659)
+.++...|.+.+|.+||++.+++. -+..++.
T Consensus 242 ~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~ 274 (283)
T 3bhy_A 242 AKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRR 274 (283)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHH
Confidence 446677899999999999999987 3555554
No 277
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=45.98 E-value=12 Score=35.66 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=20.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++...|.+.+|.+||++.+|++
T Consensus 260 ~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 260 CCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHccCChhhCcCHHHHhc
Confidence 345566799999999999999986
No 278
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=45.41 E-value=12 Score=35.22 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=19.9
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.+++.
T Consensus 255 ~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 255 AKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp HHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHccCChhhCCCHHHHhc
Confidence 345567799999999999999874
No 279
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=44.87 E-value=12 Score=34.92 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=19.7
Q ss_pred HHHhHhcCCCCCcCCCChHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
..+-..|.+.+|.+||++.||++
T Consensus 235 ~~li~~~l~~~p~~Rps~~e~l~ 257 (279)
T 3fdn_A 235 RDLISRLLKHNPSQRPMLREVLE 257 (279)
T ss_dssp HHHHHHHCCSSGGGSCCHHHHHH
T ss_pred HHHHHHHhccChhhCCCHHHHhh
Confidence 35566799999999999999986
No 280
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=43.90 E-value=8.2 Score=35.91 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=19.8
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++-..|.+.+|.+||++.|+++
T Consensus 239 ~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 239 AAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHhhcCHhHCCCHHHHhh
Confidence 345667799999999999999864
No 281
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=43.18 E-value=12 Score=35.85 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=18.8
Q ss_pred HHhHhcCCCCCcCCCChHHHHH
Q 038552 624 RTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 624 ~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.+-..|.+.+|.+||+|.+|+.
T Consensus 273 ~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 273 DFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp HHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHHccCChhhCcCHHHHhc
Confidence 4455799999999999999975
No 282
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=43.05 E-value=12 Score=36.97 Aligned_cols=26 Identities=8% Similarity=-0.074 Sum_probs=22.4
Q ss_pred HHHHHHhHhcCCCCCcCCCChHHHHH
Q 038552 620 NAIIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 620 ~~~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
..+..+-..|.+.+|.+||++.||++
T Consensus 366 ~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 366 AGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp HHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHHhccChhhcCCHHHHhh
Confidence 35667888999999999999999874
No 283
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=42.87 E-value=9.2 Score=37.00 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.4
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+...|.+.+|.+||++.+|++
T Consensus 287 ~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 287 FVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHccCCcccCcCHHHHhc
Confidence 445667899999999999999876
No 284
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=42.85 E-value=9.2 Score=35.60 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=20.1
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++...|.+.+|.+||++.+|+.
T Consensus 239 ~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 239 AKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHcccCHhhCCCHHHHhc
Confidence 345667899999999999999875
No 285
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=42.69 E-value=9.4 Score=36.14 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=21.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAK 646 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~ 646 (659)
+..+-..|.+.+|.+||++.+|++.
T Consensus 247 l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 247 LKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp HHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred HHHHHHHHcCCChhhCcCHHHHhhC
Confidence 4456677999999999999999874
No 286
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=42.63 E-value=15 Score=34.68 Aligned_cols=24 Identities=17% Similarity=0.036 Sum_probs=20.1
Q ss_pred HHHhHhcCCCCCcCCCChHHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVAK 646 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~~ 646 (659)
..+...|.+.+|.+||++.++++.
T Consensus 241 ~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 241 SDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred HHHHHHHccCChhhCCCHHHHhcC
Confidence 355667999999999999999863
No 287
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=42.54 E-value=13 Score=35.16 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=20.1
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.||++
T Consensus 233 ~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 233 VKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHcccChhhCCCHHHHhc
Confidence 345566899999999999999986
No 288
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=42.33 E-value=11 Score=35.88 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=20.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+...|.+.+|.+||++.++++
T Consensus 260 l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 260 FQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp HHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHHHHHccCChhHCcCHHHHhh
Confidence 345566899999999999999976
No 289
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=41.66 E-value=13 Score=35.64 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.6
Q ss_pred HHHHHhHhcCCCCCcCCCChHHHHH
Q 038552 621 AIIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 621 ~~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.+.++...|.+.+|.+||++.||++
T Consensus 304 ~l~~li~~~L~~dP~~Rpt~~ell~ 328 (339)
T 1z57_A 304 RLFDLIQKMLEYDPAKRITLREALK 328 (339)
T ss_dssp HHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHHhCcCcccccCHHHHhc
Confidence 4567778899999999999999875
No 290
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=41.42 E-value=7.3 Score=37.57 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=20.8
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++...|.+.+|.+||++.|+++
T Consensus 283 l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 283 VIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp HHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred HHHHHHHHhccCcccCCCHHHHhc
Confidence 556677899999999999999875
No 291
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=41.39 E-value=10 Score=37.09 Aligned_cols=25 Identities=8% Similarity=-0.111 Sum_probs=21.1
Q ss_pred HHHHHhHhcCCCCCcCCCChHHHHH
Q 038552 621 AIIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 621 ~~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.+..+...|.+.+|.+||++.||++
T Consensus 331 ~l~~li~~~L~~dP~~Rpta~elL~ 355 (360)
T 3llt_A 331 LFCDFLYSILQIDPTLRPSPAELLK 355 (360)
T ss_dssp HHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHHhcCChhhCCCHHHHhc
Confidence 3557778899999999999999863
No 292
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=41.11 E-value=12 Score=35.45 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=18.3
Q ss_pred HHhHhcCCCCCcCCCChHHHHH
Q 038552 624 RTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 624 ~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.+-..|.+.+|.+|||+.|+.+
T Consensus 261 ~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 261 EIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp HHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHccCChhHCcCHHHHhc
Confidence 4556799999999999998753
No 293
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=41.04 E-value=11 Score=35.15 Aligned_cols=24 Identities=8% Similarity=-0.071 Sum_probs=20.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++-..|.+.+|.+||++.|+++
T Consensus 238 ~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 238 AKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp HHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHcccChhhCCCHHHHhc
Confidence 345566799999999999999976
No 294
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=40.79 E-value=16 Score=34.65 Aligned_cols=24 Identities=4% Similarity=-0.028 Sum_probs=20.4
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.|+++
T Consensus 272 ~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 272 AKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp HHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHhhCChhhCCCHHHHhc
Confidence 446667899999999999999976
No 295
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=39.83 E-value=13 Score=36.71 Aligned_cols=31 Identities=6% Similarity=-0.183 Sum_probs=23.7
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH--HHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA--KLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~--~L~~~~~ 652 (659)
+..+...|.+.+|.+||++.++++ -+..+++
T Consensus 336 ~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~ 368 (377)
T 3byv_A 336 VRALLEGFLRYPKEDRLLPLQAMETPEYEQLRT 368 (377)
T ss_dssp HHHHHHHHTCSSGGGCCCHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHcCCCchhCCCHHHHhhChHHHHHHH
Confidence 345667899999999999999986 3455544
No 296
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=39.39 E-value=15 Score=34.75 Aligned_cols=24 Identities=8% Similarity=-0.054 Sum_probs=19.9
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++-..|.+.+|.+|||+.|+++
T Consensus 273 ~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 273 GAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHhcCCCccCCCHHHHhc
Confidence 345667799999999999999864
No 297
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=39.10 E-value=16 Score=35.32 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=20.1
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++-..|.+.+|.+||++.++++
T Consensus 264 ~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 264 AKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHCCCChhHCcCHHHHhc
Confidence 345566799999999999999986
No 298
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=39.03 E-value=13 Score=34.40 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=19.4
Q ss_pred HHHhHhcCCCCCcCCCChHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
..+-..|.+.+|.+||++.||++
T Consensus 239 ~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 239 LALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp HHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHCCCCchhCCCHHHHhc
Confidence 35667799999999999999865
No 299
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=38.89 E-value=16 Score=34.09 Aligned_cols=24 Identities=8% Similarity=-0.148 Sum_probs=20.5
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.+++.
T Consensus 253 ~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 253 AKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHcccChhhCcCHHHHhc
Confidence 445667899999999999999986
No 300
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=38.85 E-value=13 Score=35.05 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=19.4
Q ss_pred HHHhHhcCCCCCcCCCChHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
..+-..|.+.+|.+||++.|+++
T Consensus 247 ~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 247 RDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp HHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHccCChhHCcCHHHHhh
Confidence 35556799999999999999875
No 301
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=38.82 E-value=24 Score=34.98 Aligned_cols=31 Identities=3% Similarity=-0.137 Sum_probs=25.9
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
+..+--.|.+.+|.+||++.++...+..+-+
T Consensus 279 l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~ 309 (396)
T 4eut_A 279 LTPVLANILEADQEKCWGFDQFFAETSDILH 309 (396)
T ss_dssp HHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred chHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence 4456677999999999999999999987643
No 302
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=38.77 E-value=13 Score=35.97 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=21.2
Q ss_pred HHHHHhHhcCCCCCcCCCChHHHHH
Q 038552 621 AIIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 621 ~~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.+..+-..|.+.+|.+||++.||++
T Consensus 309 ~l~~li~~~L~~dP~~Rpt~~e~l~ 333 (355)
T 2eu9_A 309 QLFDLMRRMLEFDPAQRITLAEALL 333 (355)
T ss_dssp HHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHHhcCChhhCcCHHHHhc
Confidence 4556777899999999999999874
No 303
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=38.68 E-value=14 Score=34.87 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=19.7
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.||++
T Consensus 269 l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 269 LKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp HHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHHHHHhhcChhhCCCHHHHhc
Confidence 345667899999999999999853
No 304
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=38.35 E-value=16 Score=36.02 Aligned_cols=25 Identities=8% Similarity=-0.132 Sum_probs=21.4
Q ss_pred HHHHHhHhcCCCCCcCCCChHHHHH
Q 038552 621 AIIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 621 ~~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.+..+-..|.+.+|.+|||+.|+++
T Consensus 348 ~~~dli~~mL~~dP~~Rpta~e~L~ 372 (382)
T 2vx3_A 348 KFKDLILRMLDYDPKTRIQPYYALQ 372 (382)
T ss_dssp HHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHHHHHhcCCChhhCCCHHHHhc
Confidence 4667778899999999999999864
No 305
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=38.11 E-value=17 Score=34.94 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=19.5
Q ss_pred HHHhHhcCCCCCcCCCChHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
..+-..|.+.+|.+||++.++++
T Consensus 249 ~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 249 KDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHccCChhhCCCHHHHhc
Confidence 34556799999999999999986
No 306
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=37.89 E-value=17 Score=34.05 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=19.8
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.|+++
T Consensus 257 ~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 257 GIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHcCCCcccCCCHHHHhc
Confidence 345667799999999999999864
No 307
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=37.81 E-value=14 Score=34.76 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=19.8
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.+++.
T Consensus 252 l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 252 FRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp HHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred HHHHHHHHcccChhhCCCHHHHhc
Confidence 345566799999999999999875
No 308
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=37.79 E-value=14 Score=37.26 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=20.8
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+...|.+.+|.+||+|.+|++
T Consensus 272 ~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 272 ATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHhhCChhhCCCHHHHHh
Confidence 456677899999999999999975
No 309
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=37.42 E-value=16 Score=34.73 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=20.5
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++-..|.+.+|.+||++.++++
T Consensus 282 ~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 282 AVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHcCCCccccCCHHHHhC
Confidence 446667899999999999999975
No 310
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=37.14 E-value=16 Score=34.99 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=20.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+|||+.|+++
T Consensus 296 ~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 296 ALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHhcCCcccCCCHHHHhc
Confidence 445667899999999999999875
No 311
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=37.07 E-value=18 Score=34.92 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=19.6
Q ss_pred HHHhHhcCCCCCcCCCChHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
..+-..|.+.+|.+||++.++++
T Consensus 252 ~~li~~~L~~dP~~Rps~~ell~ 274 (335)
T 3dls_A 252 MSLVSGLLQPVPERRTTLEKLVT 274 (335)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HHHHHHHccCChhhCcCHHHHhc
Confidence 45556799999999999999986
No 312
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=36.28 E-value=20 Score=34.30 Aligned_cols=24 Identities=8% Similarity=-0.028 Sum_probs=20.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.|+++
T Consensus 234 ~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 234 AMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHcCCChhHCcCHHHHhc
Confidence 345667899999999999999876
No 313
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=35.84 E-value=19 Score=34.23 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=19.8
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+|||+.|+++
T Consensus 277 ~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 277 GIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp HHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHHHHHHcCCChhHCCCHHHHhc
Confidence 345667799999999999999874
No 314
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=35.83 E-value=23 Score=33.70 Aligned_cols=24 Identities=4% Similarity=-0.024 Sum_probs=20.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.+++.
T Consensus 249 ~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 249 AKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp HHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHcCCChhhCcCHHHHhc
Confidence 345667899999999999999976
No 315
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=35.80 E-value=16 Score=35.03 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=19.9
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.|+++
T Consensus 295 ~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 295 GLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHccCChhhCCCHHHHhC
Confidence 345667799999999999999864
No 316
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=35.69 E-value=15 Score=35.21 Aligned_cols=23 Identities=26% Similarity=0.131 Sum_probs=19.3
Q ss_pred HHHhHhcCCCCCcCCCChHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
..+-..|.+.+|.+||++.|+++
T Consensus 303 ~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 303 HMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp HHHHHHHHCSSGGGSCCHHHHHH
T ss_pred HHHHHHHccCCCCcCCCHHHHhh
Confidence 35556799999999999999875
No 317
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=35.47 E-value=15 Score=35.51 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=20.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++-..|.+.+|.+||++.++++
T Consensus 282 ~~~li~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 282 GIDLLQRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHhcCcCcccCCCHHHHhc
Confidence 346667899999999999999875
No 318
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=35.31 E-value=23 Score=34.16 Aligned_cols=23 Identities=13% Similarity=-0.149 Sum_probs=19.4
Q ss_pred HHHhHhcCCCCCcCCCChHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.++-..|.+.+|.+||++.++++
T Consensus 308 ~~li~~~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 308 RDLLSNLLNRNVDERFDAMRALQ 330 (345)
T ss_dssp HHHHHHHSCSCTTTSCCHHHHHH
T ss_pred HHHHHHHcCCChhHCCCHHHHhc
Confidence 35556799999999999999875
No 319
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=35.18 E-value=17 Score=34.08 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=19.3
Q ss_pred HHHhHhcCCCCCcCCCChHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
..+-..|.+.+|.+|||+.|+++
T Consensus 260 ~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 260 RDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHhccChhhCCCHHHHhc
Confidence 45667799999999999999864
No 320
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=35.08 E-value=19 Score=34.30 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=20.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++...|.+.+|.+||++.++++
T Consensus 251 ~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 251 ALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp HHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHcccCHhhCCCHHHHhh
Confidence 446667899999999999999874
No 321
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=34.95 E-value=20 Score=34.93 Aligned_cols=25 Identities=20% Similarity=0.060 Sum_probs=21.5
Q ss_pred HHHHHhHhcCCCCCcCCCChHHHHH
Q 038552 621 AIIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 621 ~~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.+..+-..|.+.+|.+||++.||++
T Consensus 309 ~~~~li~~~L~~dP~~Rpt~~ell~ 333 (373)
T 1q8y_A 309 EISDFLSPMLQLDPRKRADAGGLVN 333 (373)
T ss_dssp HHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred HHHHHHHHHhccCccccCCHHHHhh
Confidence 4557778899999999999999865
No 322
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=34.89 E-value=19 Score=33.82 Aligned_cols=30 Identities=7% Similarity=0.113 Sum_probs=24.7
Q ss_pred HHHHhHhcCCCCCcCCC-ChHHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERM-DMRDIVAKLCHTR 651 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP-~M~~Vv~~L~~~~ 651 (659)
+.++-..|.+.+|.+|| ++.++...|+.+.
T Consensus 244 l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~ 274 (294)
T 4eqm_A 244 LSNVILRATEKDKANRYKTIQEMKDDLSSVL 274 (294)
T ss_dssp HHHHHHHHSCSSGGGSCSSHHHHHHHHHTSS
T ss_pred HHHHHHHHhcCCHhHccccHHHHHHHHHHHH
Confidence 44566779999999998 9999999887653
No 323
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=34.52 E-value=18 Score=35.01 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=20.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.++++
T Consensus 299 l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 299 DIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp HHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHccCChhhCCCHHHHhc
Confidence 345666899999999999999986
No 324
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=34.48 E-value=15 Score=35.29 Aligned_cols=24 Identities=8% Similarity=-0.094 Sum_probs=19.9
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.++++
T Consensus 264 ~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 264 ATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHcCCChhhCcCHHHHhC
Confidence 345667899999999999999864
No 325
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=34.26 E-value=39 Score=19.47 Aligned_cols=14 Identities=36% Similarity=0.325 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhhcc
Q 038552 523 SSCLTIIYARRRRF 536 (659)
Q Consensus 523 ~~~~~~~~~~~~~~ 536 (659)
.....+.|||.++.
T Consensus 22 ~lg~tflywrgrrh 35 (40)
T 2l9u_A 22 MLGGTFLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhCceeEEEccccc
Confidence 34445677776654
No 326
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=34.07 E-value=15 Score=35.69 Aligned_cols=25 Identities=16% Similarity=-0.028 Sum_probs=21.3
Q ss_pred HHHHHhHhcCCCCCcCCCChHHHHH
Q 038552 621 AIIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 621 ~~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.+..+...|.+.+|.+||++.||++
T Consensus 290 ~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 290 EAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHHhccCccccCCHHHHhc
Confidence 3557778899999999999999875
No 327
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=33.97 E-value=18 Score=33.52 Aligned_cols=24 Identities=13% Similarity=-0.039 Sum_probs=19.8
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.++++
T Consensus 238 ~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 238 AESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHccCChhhCcCHHHHhc
Confidence 345556799999999999999875
No 328
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=33.39 E-value=22 Score=33.38 Aligned_cols=24 Identities=13% Similarity=-0.045 Sum_probs=19.8
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.+++.
T Consensus 260 ~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 260 GRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHhcCcCcccCCCHHHHhc
Confidence 345566799999999999999875
No 329
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=33.21 E-value=16 Score=34.24 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=20.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++-..|.+.+|.+||++.++++
T Consensus 260 l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 260 VKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp HHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHccCCcccCCCHHHHHh
Confidence 446667899999999999999874
No 330
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=32.98 E-value=16 Score=35.45 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=18.9
Q ss_pred HHhHhcCCCCCcCCCChHHHHH
Q 038552 624 RTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 624 ~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.+-..|.+.+|.+||++.++++
T Consensus 284 ~li~~~l~~dP~~Rps~~~ll~ 305 (348)
T 1u5q_A 284 NFVDSCLQKIPQDRPTSEVLLK 305 (348)
T ss_dssp HHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHcccChhhCcCHHHHhh
Confidence 4556799999999999999875
No 331
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=32.71 E-value=12 Score=35.28 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=19.5
Q ss_pred HHHhHhcCCCCCcCCCChHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.++-..|.+.+|.+||++.+++.
T Consensus 243 ~~li~~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 243 ASLIQKMLQTDPTARPTINELLN 265 (294)
T ss_dssp HHHHHHHTCSSGGGSCCGGGGGG
T ss_pred HHHHHHHcccChhhCcCHHHHhh
Confidence 35556799999999999999876
No 332
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=32.70 E-value=18 Score=35.25 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=19.9
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.++++
T Consensus 301 ~~~li~~~L~~dP~~Rpt~~ell~ 324 (360)
T 3eqc_A 301 FQDFVNKCLIKNPAERADLKQLMV 324 (360)
T ss_dssp HHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHhhcChhhCCCHHHHhh
Confidence 345556799999999999999876
No 333
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=32.58 E-value=20 Score=34.03 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=20.1
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.+++.
T Consensus 255 l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 255 FTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp HHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHHHHHccCChhhCcCHHHHHh
Confidence 345566799999999999999975
No 334
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=32.41 E-value=25 Score=33.44 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=20.1
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.+++.
T Consensus 273 ~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 273 GKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp HHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHcCCCcccCCCHHHHhc
Confidence 345667899999999999999874
No 335
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=32.26 E-value=21 Score=35.86 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=20.5
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+|||+.|+++
T Consensus 385 ~~dli~~~L~~dP~~Rpta~e~L~ 408 (429)
T 3kvw_A 385 FLDFLKQCLEWDPAVRMTPGQALR 408 (429)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHCCCChhhCCCHHHHhC
Confidence 456667899999999999999875
No 336
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=32.16 E-value=20 Score=33.31 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=19.6
Q ss_pred HHHhHhcCCCCCcCCCChHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
..+-..|.+.+|.+||++.+++.
T Consensus 240 ~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 240 KDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHhhcCHhhCCCHHHHhh
Confidence 35666799999999999999875
No 337
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=32.05 E-value=27 Score=34.12 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=19.9
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.++++
T Consensus 336 ~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 336 VKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp HHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHcCCChhHCcCHHHHhc
Confidence 345666799999999999999875
No 338
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=31.24 E-value=21 Score=35.25 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=20.5
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.|+++
T Consensus 310 ~~~li~~~L~~dP~~Rpta~ell~ 333 (389)
T 3gni_B 310 FHHFVEQCLQRNPDARPSASTLLN 333 (389)
T ss_dssp HHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHHHHHhhcCcccCCCHHHHhc
Confidence 456667899999999999999874
No 339
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=31.08 E-value=18 Score=34.57 Aligned_cols=24 Identities=8% Similarity=-0.179 Sum_probs=20.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+|||+.||++
T Consensus 258 ~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 258 GADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHcCcCcccCCCHHHHhc
Confidence 345667799999999999999875
No 340
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=30.58 E-value=29 Score=34.70 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=20.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++-..|.+.+|.+||++.++++
T Consensus 376 ~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 376 ALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp HHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHccCChhHCcCHHHHhC
Confidence 445667899999999999999875
No 341
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=30.48 E-value=21 Score=34.72 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=20.5
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.++++
T Consensus 293 ~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 293 ALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHhcCChhhCCCHHHHHc
Confidence 456677899999999999999875
No 342
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=30.37 E-value=22 Score=34.03 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=19.3
Q ss_pred HHHhHhcCCCCCcCCCChHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
..+-..|.+.+|.+||++.|+++
T Consensus 239 ~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 239 LALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp HHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHccCChhhCcCHHHHhh
Confidence 35566799999999999999864
No 343
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=29.79 E-value=24 Score=33.66 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=19.3
Q ss_pred HHHhHhcCCCCCcCCCChHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
..+-..|.+.+|.+||++.++++
T Consensus 264 ~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 264 QSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp HHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHHHHHhccChhhCCCHHHHhh
Confidence 34556799999999999999876
No 344
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=29.75 E-value=22 Score=34.74 Aligned_cols=24 Identities=4% Similarity=-0.279 Sum_probs=19.8
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.++++
T Consensus 329 ~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 329 VKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp HHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred HHHHHHHHcCCChhhCCCHHHHhc
Confidence 335556799999999999999975
No 345
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=29.71 E-value=23 Score=35.67 Aligned_cols=24 Identities=8% Similarity=-0.020 Sum_probs=20.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+...|.+.+|.+||++.+|++
T Consensus 260 ~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 260 ARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHhCCHhhCCCHHHHHh
Confidence 345667899999999999999983
No 346
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=29.55 E-value=30 Score=33.54 Aligned_cols=24 Identities=8% Similarity=-0.067 Sum_probs=20.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.++++
T Consensus 282 ~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 282 AKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHccCChhhCcCHHHHhc
Confidence 345667899999999999999875
No 347
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=29.53 E-value=23 Score=34.44 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=18.8
Q ss_pred HHhHhcCCCCCcCCCChHHHHH
Q 038552 624 RTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 624 ~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.+--.|.+.+|.+|||+.|+++
T Consensus 239 ~li~~~L~~dP~~Rps~~eil~ 260 (347)
T 3zgw_A 239 LLLQQMLQVDPKKRISMKNLLN 260 (347)
T ss_dssp HHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHcccCHhHCcCHHHHhc
Confidence 4556799999999999999875
No 348
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=29.41 E-value=22 Score=34.35 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=20.3
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.|+++
T Consensus 288 ~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 288 ALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHhcCChhhCCCHHHHhC
Confidence 456667899999999999999875
No 349
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=29.30 E-value=28 Score=33.80 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=19.4
Q ss_pred HHHhHhcCCCCCcCCCChHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
..+-..|.+.+|.+||++.++++
T Consensus 264 ~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 264 KDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHCCCChhHCcCHHHHhc
Confidence 35556799999999999999875
No 350
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=29.17 E-value=24 Score=33.45 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=18.4
Q ss_pred HHhHhcCCCCCcCCCChHHHHH
Q 038552 624 RTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 624 ~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.+-..|.+.+|.+||++.|+++
T Consensus 258 ~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 258 VMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp HHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHcCCChhHCcCHHHHhc
Confidence 3445799999999999999865
No 351
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=28.40 E-value=28 Score=33.97 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=20.1
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.|+++
T Consensus 290 ~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 290 ALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHcCCChhhCCCHHHHhc
Confidence 446667899999999999999875
No 352
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=27.37 E-value=23 Score=33.68 Aligned_cols=24 Identities=8% Similarity=-0.029 Sum_probs=19.9
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+--.|.+.+|.+||++.|+++
T Consensus 270 l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 270 LMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHCCCCcccCCCHHHHhC
Confidence 446667799999999999998864
No 353
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=27.34 E-value=30 Score=33.87 Aligned_cols=24 Identities=4% Similarity=-0.209 Sum_probs=20.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.|+++
T Consensus 300 ~~~li~~~L~~dP~~Rpt~~ell~ 323 (371)
T 4exu_A 300 AADLLEKMLELDVDKRLTAAQALT 323 (371)
T ss_dssp HHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHHHHHHCCCChhhcCCHHHHhc
Confidence 445667899999999999998874
No 354
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=27.09 E-value=26 Score=33.91 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=20.1
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+--.|.+.+|.+||++.|+++
T Consensus 268 ~~~li~~~L~~dP~~Rpt~~ell~ 291 (346)
T 1ua2_A 268 LLDLIQGLFLFNPCARITATQALK 291 (346)
T ss_dssp HHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHhccChhhCCCHHHHhc
Confidence 445667799999999999999875
No 355
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=26.23 E-value=32 Score=33.50 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=20.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.+++.
T Consensus 251 ~~~li~~~L~~dP~~Rps~~ell~ 274 (361)
T 3uc3_A 251 CCHLISRIFVADPATRISIPEIKT 274 (361)
T ss_dssp HHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHHHHHHccCChhHCcCHHHHHh
Confidence 345667799999999999999875
No 356
>2nr5_A Hypothetical protein SO2669; PSI-2, MCSG, MAD, structural G protein structure initiative, midwest center for structural genomics; 1.90A {Shewanella oneidensis} SCOP: a.25.6.1
Probab=26.20 E-value=1.3e+02 Score=19.15 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=24.9
Q ss_pred HHHHHHHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552 617 ECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRE 652 (659)
Q Consensus 617 ~~~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~ 652 (659)
|.+-++-.|--.|-+++..+-..|.+|----.+|++
T Consensus 20 ealgklkairqlcgaedssdssdmqeveiwtnrike 55 (67)
T 2nr5_A 20 EALGKLKAIRQLCGAEDSSDSSDMQEVEIWTNRIKE 55 (67)
T ss_dssp HHHHHHHHHHHTTTTTCC----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccCCcchhhHHHHHHHHHHHH
Confidence 455566667778999999999999999776667765
No 357
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=25.70 E-value=33 Score=33.14 Aligned_cols=24 Identities=4% Similarity=-0.209 Sum_probs=19.8
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.+++.
T Consensus 282 ~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 282 AADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp HHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHHHHHHcCCCcccCCCHHHHhc
Confidence 345567799999999999999874
No 358
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=25.69 E-value=56 Score=30.90 Aligned_cols=29 Identities=3% Similarity=-0.126 Sum_probs=23.7
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVAKLCHT 650 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~ 650 (659)
+..+--.|.+.+|.+||++.|+++-....
T Consensus 279 l~~ll~~~L~~dP~~R~s~~ell~h~~d~ 307 (319)
T 4euu_A 279 LTPVLANILEADQEKCWGFDQFFAETSDI 307 (319)
T ss_dssp HHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred hHHHHHHhccCChhhhccHHHhhhccHHH
Confidence 44566779999999999999999877644
No 359
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=25.53 E-value=36 Score=31.70 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=18.0
Q ss_pred HHhHhcCCCCCcCCCChHHHHH
Q 038552 624 RTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 624 ~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.+-..|.+.+|.+|||+.|+.+
T Consensus 241 ~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 241 GLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp HHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHHHccCChhHCcCHHHHHc
Confidence 3445799999999999999864
No 360
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=25.51 E-value=27 Score=33.72 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=19.3
Q ss_pred HHHhHhcCCCCCcCCCChHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
..+--.|.+.+|.+|||+.|+++
T Consensus 236 ~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 236 QSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHcCCChhHCcCHHHHHh
Confidence 35566799999999999999864
No 361
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=25.37 E-value=29 Score=32.65 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=19.6
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+.++-..|.+.+|.+||++.+++.
T Consensus 238 ~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 238 AKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp HHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHcCCChhHCcCHHHHhc
Confidence 345566789999999999999875
No 362
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=24.84 E-value=33 Score=33.92 Aligned_cols=24 Identities=13% Similarity=0.047 Sum_probs=20.2
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.++++
T Consensus 281 ~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 281 AKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHcCCChhHCcCHHHHhh
Confidence 345667899999999999999875
No 363
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=24.11 E-value=20 Score=34.44 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=18.9
Q ss_pred HHhHhcCCCCCcCCCChHHHHH
Q 038552 624 RTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 624 ~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.+-..|.+.+|.+||++.+++.
T Consensus 270 ~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 270 SLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp HHHHHHTCSSGGGSCCGGGGGG
T ss_pred HHHHHHccCChhHCcCHHHHhc
Confidence 4556799999999999999875
No 364
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=23.92 E-value=16 Score=35.08 Aligned_cols=22 Identities=14% Similarity=-0.013 Sum_probs=18.2
Q ss_pred HHHhHhcCCCCCcCCCChHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIV 644 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv 644 (659)
..+-..|.+.+|.+||++.+|+
T Consensus 248 ~~li~~~L~~dP~~Rpt~~ell 269 (325)
T 3kn6_A 248 KDLIQGLLTVDPNKRLKMSGLR 269 (325)
T ss_dssp HHHHHHHHCCCTTTCCCTTTST
T ss_pred HHHHHHHCCCChhHCCCHHHHh
Confidence 3455679999999999999876
No 365
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=23.80 E-value=33 Score=32.91 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=18.4
Q ss_pred HHhHhcCCCCCcCCCChHHHHH
Q 038552 624 RTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 624 ~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.+--.|.+.+|.+|||+.|+++
T Consensus 243 ~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 243 NLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp HHHHHHCCSSTTTSCCHHHHTT
T ss_pred HHHHHHCCCChhHCcCHHHHhc
Confidence 4555699999999999999864
No 366
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=23.66 E-value=30 Score=34.55 Aligned_cols=24 Identities=4% Similarity=-0.274 Sum_probs=19.0
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.++++
T Consensus 340 ~~~li~~~l~~dP~~Rpt~~~~l~ 363 (413)
T 3dzo_A 340 VRALLEGFLRYPKEDRLLPLQAME 363 (413)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHccCChhhCcCHHHHHh
Confidence 345556899999999999888754
No 367
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=23.33 E-value=47 Score=33.49 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=18.8
Q ss_pred HHhHhcCCCCCcCCCChHHHHH
Q 038552 624 RTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 624 ~val~C~~~~p~~RP~M~~Vv~ 645 (659)
.+-..|.+.+|.+||++.|+++
T Consensus 246 ~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 246 DLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp HHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHcCCChhHCCCHHHHhc
Confidence 4556799999999999999875
No 368
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=23.03 E-value=46 Score=32.56 Aligned_cols=24 Identities=4% Similarity=-0.130 Sum_probs=20.4
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+-..|.+.+|.+||++.|+++
T Consensus 319 ~~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 319 AKEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHcCCChhhCCCHHHHhc
Confidence 345667899999999999999986
No 369
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=22.99 E-value=43 Score=32.69 Aligned_cols=24 Identities=4% Similarity=-0.063 Sum_probs=20.4
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+--.|.+.+|.+|||+.|+++
T Consensus 295 ~~~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 295 ARDLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHCcCChhhCCCHHHHhC
Confidence 456667899999999999999875
No 370
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=22.01 E-value=37 Score=33.66 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=20.1
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+--.|.+.+|.+|||+.|+++
T Consensus 310 ~~~Ll~~~L~~dP~~R~ta~e~L~ 333 (405)
T 3rgf_A 310 AFHLLQKLLTMDPIKRITSEQAMQ 333 (405)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHccCCcccCCCHHHHhc
Confidence 446667799999999999998874
No 371
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=21.61 E-value=51 Score=32.64 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=20.1
Q ss_pred HHHHhHhcCCCCCcCCCChHHHHH
Q 038552 622 IIRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 622 ~~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
+..+--.|.+.+|.+||++.+|+.
T Consensus 298 ~~~li~~~L~~dP~~Rpt~~eil~ 321 (400)
T 1nxk_A 298 VKMLIRNLLKTEPTQRMTITEFMN 321 (400)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHCCCChhHCcCHHHHhc
Confidence 345567899999999999999875
No 372
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=20.30 E-value=48 Score=33.80 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.2
Q ss_pred HHHhHhcCCCCCcCCCChHHHHH
Q 038552 623 IRTGVLCSMESPFERMDMRDIVA 645 (659)
Q Consensus 623 ~~val~C~~~~p~~RP~M~~Vv~ 645 (659)
..+--.|.+.+|.+||++.+|+.
T Consensus 244 ~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 244 ISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHcCCCchhCcCHHHHHh
Confidence 34556799999999999999875
No 373
>1ynf_A Succinylarginine dihydrolase; 1.90A {Escherichia coli} SCOP: d.126.1.7 PDB: 1ynh_A* 1yni_A*
Probab=20.13 E-value=26 Score=33.80 Aligned_cols=40 Identities=18% Similarity=0.434 Sum_probs=29.9
Q ss_pred ChHHHHHHHhccc--cccccccccchhhhccccchhhhhHHHHHHHHHHHHHHh
Q 038552 575 TLHEYAKMALQEK--VMEIIDPSLLMDVIENNSKIREDRRAKLEECLNAIIRTG 626 (659)
Q Consensus 575 ~l~~~~~~~~~~~--~~~i~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~va 626 (659)
.|..||.+.|+++ ..++.||.|..+.. ...+++..++++|
T Consensus 404 ~L~~wV~~hYRd~L~~~DLaDP~Ll~E~r------------~ALdeLTqiL~LG 445 (458)
T 1ynf_A 404 ALNDWVDRYYRDRLTAADLADPQLLREGR------------EALDVLSQLLNLG 445 (458)
T ss_dssp HHHHHHHHHCCSCBCGGGGGCHHHHHHHH------------HHHHHHHHHTTCC
T ss_pred HHHHHHHHhccccCChhhccCHHHHHHHH------------HHHHHHHHHhccc
Confidence 5789999999998 56899999975432 2336777777665
Done!