Query 038555
Match_columns 239
No_of_seqs 171 out of 1178
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 12:14:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 99.9 1.9E-27 4.2E-32 181.9 1.9 98 39-140 1-114 (114)
2 cd00028 B_lectin Bulb-type man 99.9 4.5E-23 9.8E-28 158.1 12.4 102 1-108 3-116 (116)
3 smart00108 B_lectin Bulb-type 99.9 1.8E-21 3.9E-26 148.8 11.4 100 1-107 3-114 (114)
4 PF00954 S_locus_glycop: S-loc 99.6 1.4E-14 3E-19 110.0 8.9 73 166-239 1-74 (110)
5 smart00108 B_lectin Bulb-type 98.2 1.2E-05 2.7E-10 61.0 8.3 70 62-168 41-111 (114)
6 cd00028 B_lectin Bulb-type man 98.1 3E-05 6.4E-10 59.1 8.5 71 62-169 42-113 (116)
7 PF01453 B_lectin: D-mannose b 96.9 0.0032 6.9E-08 47.9 6.3 71 62-168 3-78 (114)
8 PF12690 BsuPI: Intracellular 26.7 2.1E+02 0.0046 20.1 5.2 7 141-147 75-81 (82)
9 PF12197 lci: Bacillus cereus 22.9 2.1E+02 0.0045 18.0 4.0 36 7-46 4-39 (45)
10 PHA00149 DNA encapsidation pro 21.9 1.9E+02 0.0042 25.9 5.0 39 9-53 234-272 (331)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.93 E-value=1.9e-27 Score=181.95 Aligned_cols=98 Identities=55% Similarity=0.823 Sum_probs=63.9
Q ss_pred CCcEEEEecCCCCCCCCCCC---------------cCCcEEEee-cCCCCcccceEEEEecCCCeeeecCCCCCCCeeEE
Q 038555 39 VKTVVWVANRINPINDSSGF---------------QNKSVVWSA-NLSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLW 102 (239)
Q Consensus 39 ~~tvvW~Anr~~pv~~~~~~---------------~~~~~vWss-~~~~~~~~~~~~~L~d~GNlvl~~~~~~~~~~~lW 102 (239)
++||||+|||++|+...++. ..+..+|++ ++.+.......|+|+|+|||||++. .+.+||
T Consensus 1 ~~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~----~~~~lW 76 (114)
T PF01453_consen 1 PRTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDS----SGNVLW 76 (114)
T ss_dssp ---------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEET----TSEEEE
T ss_pred CcccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEee----cceEEE
Confidence 37999999999999532211 445789999 5554431345789999999999985 678999
Q ss_pred EecCCCccccCCCceecccccCCceeEEEecCCCCCCC
Q 038555 103 QSFDYPSDTLLPGMKLGWDLKTGLERRITSWKSPDDPS 140 (239)
Q Consensus 103 qSFd~PTDTlLpgq~l~~~~~tg~~~~L~Sw~s~~dps 140 (239)
|||||||||+||||+|+.+..+|.+..|+||++.+||+
T Consensus 77 ~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 77 QSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp ESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred eecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 99999999999999999987777667799999999996
No 2
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.90 E-value=4.5e-23 Score=158.13 Aligned_cols=102 Identities=51% Similarity=0.787 Sum_probs=82.5
Q ss_pred CCCCCCEEEeCCCeeEEeeecCCCCCceEEEEEEecCCCCcEEEEecCCCCCCCCCCC------------cCCcEEEeec
Q 038555 1 SLSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPINDSSGF------------QNKSVVWSAN 68 (239)
Q Consensus 1 ~l~~~~~l~S~~g~F~lgF~~~~~~~~~yl~iw~~~~~~~tvvW~Anr~~pv~~~~~~------------~~~~~vWss~ 68 (239)
.|.+|++|+|+++.|++|||.+......+++|||.+.+ +++||.||++.|....+.+ .++.+||+++
T Consensus 3 ~l~~~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~~~~-~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~ 81 (116)
T cd00028 3 PLSSGQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSS-RTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGSGTVVWSSN 81 (116)
T ss_pred CcCCCCEEEeCCCcEEEecccCCCCCCeEEEEEEeCCC-CeEEEECCCCCCCCCCEEEEEecCCCeEEEcCCCcEEEEec
Confidence 47899999999999999999987533388999998766 7899999999884432211 4578999999
Q ss_pred CCCCcccceEEEEecCCCeeeecCCCCCCCeeEEEecCCC
Q 038555 69 LSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYP 108 (239)
Q Consensus 69 ~~~~~~~~~~~~L~d~GNlvl~~~~~~~~~~~lWqSFd~P 108 (239)
+.. ......++|+|+|||||++. .+.+||||||||
T Consensus 82 ~~~-~~~~~~~~L~ddGnlvl~~~----~~~~~W~Sf~~P 116 (116)
T cd00028 82 TTR-VNGNYVLVLLDDGNLVLYDS----DGNFLWQSFDYP 116 (116)
T ss_pred ccC-CCCceEEEEeCCCCEEEECC----CCCEEEcCCCCC
Confidence 875 23344679999999999986 468999999999
No 3
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.86 E-value=1.8e-21 Score=148.75 Aligned_cols=100 Identities=51% Similarity=0.808 Sum_probs=81.2
Q ss_pred CCCCCCEEEeCCCeeEEeeecCCCCCceEEEEEEecCCCCcEEEEecCCCCCCCCCCC------------cCCcEEEeec
Q 038555 1 SLSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPINDSSGF------------QNKSVVWSAN 68 (239)
Q Consensus 1 ~l~~~~~l~S~~g~F~lgF~~~~~~~~~yl~iw~~~~~~~tvvW~Anr~~pv~~~~~~------------~~~~~vWss~ 68 (239)
.|..|++|+|+++.|++|||.+.. ...+++|||...+ +++||+||++.|+.....+ ..+.+||+++
T Consensus 3 ~l~~~~~l~s~~~~f~~G~~~~~~-q~dgnlV~~~~~~-~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~ 80 (114)
T smart00108 3 TLSSGQTLVSGNSLFELGFFTLIM-QNDYNLILYKSSS-RTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGDGRVVWSSN 80 (114)
T ss_pred ccCCCCEEecCCCcEeeeccccCC-CCCEEEEEEECCC-CcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCCCCEEEEec
Confidence 378899999999999999999864 4678999998766 7899999999988653221 4467999998
Q ss_pred CCCCcccceEEEEecCCCeeeecCCCCCCCeeEEEecCC
Q 038555 69 LSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLWQSFDY 107 (239)
Q Consensus 69 ~~~~~~~~~~~~L~d~GNlvl~~~~~~~~~~~lWqSFd~ 107 (239)
+.. ......++|+|+|||||++. .+.+|||||||
T Consensus 81 t~~-~~~~~~~~L~ddGnlvl~~~----~~~~~W~Sf~~ 114 (114)
T smart00108 81 TTG-ANGNYVLVLLDDGNLVIYDS----DGNFLWQSFDY 114 (114)
T ss_pred ccC-CCCceEEEEeCCCCEEEECC----CCCEEeCCCCC
Confidence 862 22344679999999999986 46799999997
No 4
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.56 E-value=1.4e-14 Score=109.99 Aligned_cols=73 Identities=42% Similarity=0.903 Sum_probs=68.4
Q ss_pred eeeCCCCCcccccc-CCCCCCceEEEEEEcCCeEEEEEEeCCCCcEEEEEEcccCCeEEEEEEcCCCCceEEeeC
Q 038555 166 QRSGPWNGLKFSAT-SLRPNPIFNFSFVSNEDELYFTIDLIDKAVFSRIVMNQTLYLRQRFTWDKATQSWELYAN 239 (239)
Q Consensus 166 w~sg~wng~~f~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~s~~~rl~Ld~dG~~l~~y~w~~~~~~W~~~w~ 239 (239)
||+|+|||..|+++ +|.....+.+.|+.+++|++++|.+.+.+.++|++||++| +++++.|.+..++|.++|.
T Consensus 1 wrsG~WnG~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~~~~~~s~~~r~~ld~~G-~l~~~~w~~~~~~W~~~~~ 74 (110)
T PF00954_consen 1 WRSGPWNGQRFSGIPEMSSNSLYNYSFVSNNEEVYYTYSLSNSSVLSRLVLDSDG-QLQRYIWNESTQSWSVFWS 74 (110)
T ss_pred CCccccCCeEECCcccccccceeEEEEEECCCeEEEEEecCCCceEEEEEEeeee-EEEEEEEecCCCcEEEEEE
Confidence 89999999999999 8877778899999999999999999888899999999999 9999999999999999984
No 5
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.16 E-value=1.2e-05 Score=61.00 Aligned_cols=70 Identities=27% Similarity=0.416 Sum_probs=47.9
Q ss_pred cEEEeecCCCCcccceEEEEecCCCeeeecCCCCCCCeeEEEecCCCccccCCCceecccccCCceeEEEecCCCCCCCC
Q 038555 62 SVVWSANLSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYPSDTLLPGMKLGWDLKTGLERRITSWKSPDDPSP 141 (239)
Q Consensus 62 ~~vWss~~~~~~~~~~~~~L~d~GNlvl~~~~~~~~~~~lWqSFd~PTDTlLpgq~l~~~~~tg~~~~L~Sw~s~~dps~ 141 (239)
.+||++++..+......+.|+++|||||++. .+.++|+|=. ....
T Consensus 41 ~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~----~g~~vW~S~t-------------------------------~~~~ 85 (114)
T smart00108 41 TVVWVANRDNPVSDSCTLTLQSDGNLVLYDG----DGRVVWSSNT-------------------------------TGAN 85 (114)
T ss_pred cEEEECCCCCCCCCCEEEEEeCCCCEEEEeC----CCCEEEEecc-------------------------------cCCC
Confidence 4899999865433334679999999999975 4678999621 0134
Q ss_pred eeeEEEecCCCCceeeEec-CCceeeee
Q 038555 142 GNFTWAVERQDNPELMMWK-GSRKFQRS 168 (239)
Q Consensus 142 G~fsl~ld~~g~~~l~~~~-~~~~yw~s 168 (239)
+.+.+.|+++|...+ ++ ..++.|.+
T Consensus 86 ~~~~~~L~ddGnlvl--~~~~~~~~W~S 111 (114)
T smart00108 86 GNYVLVLLDDGNLVI--YDSDGNFLWQS 111 (114)
T ss_pred CceEEEEeCCCCEEE--ECCCCCEEeCC
Confidence 567888888887444 43 34677865
No 6
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.05 E-value=3e-05 Score=59.10 Aligned_cols=71 Identities=28% Similarity=0.376 Sum_probs=48.8
Q ss_pred cEEEeecCCCCcccceEEEEecCCCeeeecCCCCCCCeeEEEecCCCccccCCCceecccccCCceeEEEecCCCCCCCC
Q 038555 62 SVVWSANLSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYPSDTLLPGMKLGWDLKTGLERRITSWKSPDDPSP 141 (239)
Q Consensus 62 ~~vWss~~~~~~~~~~~~~L~d~GNlvl~~~~~~~~~~~lWqSFd~PTDTlLpgq~l~~~~~tg~~~~L~Sw~s~~dps~ 141 (239)
.++|++++..+......+.|.++|||||.+. .+.++|+|-.. ...
T Consensus 42 ~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~----~g~~vW~S~~~-------------------------------~~~ 86 (116)
T cd00028 42 TVVWVANRDNPSGSSCTLTLQSDGNLVIYDG----SGTVVWSSNTT-------------------------------RVN 86 (116)
T ss_pred eEEEECCCCCCCCCCEEEEEecCCCeEEEcC----CCcEEEEeccc-------------------------------CCC
Confidence 4899999865423344679999999999975 46789986421 024
Q ss_pred eeeEEEecCCCCceeeEec-CCceeeeeC
Q 038555 142 GNFTWAVERQDNPELMMWK-GSRKFQRSG 169 (239)
Q Consensus 142 G~fsl~ld~~g~~~l~~~~-~~~~yw~sg 169 (239)
+.+.+.|+++|...+ ++ ...+.|.+.
T Consensus 87 ~~~~~~L~ddGnlvl--~~~~~~~~W~Sf 113 (116)
T cd00028 87 GNYVLVLLDDGNLVL--YDSDGNFLWQSF 113 (116)
T ss_pred CceEEEEeCCCCEEE--ECCCCCEEEcCC
Confidence 567888888887444 43 356778764
No 7
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=96.89 E-value=0.0032 Score=47.89 Aligned_cols=71 Identities=24% Similarity=0.395 Sum_probs=40.2
Q ss_pred cEEEeecCCCCcc---cceEEEEecCCCeeeecCCCCCCCeeEEEe-cCCCccccCCCceecccccCCceeEEEecCCCC
Q 038555 62 SVVWSANLSKEVR---IPVVLQLLDSGNLVLRGERDGGSETYLWQS-FDYPSDTLLPGMKLGWDLKTGLERRITSWKSPD 137 (239)
Q Consensus 62 ~~vWss~~~~~~~---~~~~~~L~d~GNlvl~~~~~~~~~~~lWqS-Fd~PTDTlLpgq~l~~~~~tg~~~~L~Sw~s~~ 137 (239)
.+||..|...+.. ....+.|+++|||||.+. .+.++|+| .. .
T Consensus 3 tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~----~~~~iWss~~t------------------------------~ 48 (114)
T PF01453_consen 3 TVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDS----NGSVIWSSNNT------------------------------S 48 (114)
T ss_dssp -------TTEEEEECETTEEEEEETTSEEEEEET----TTEEEEE--S-------------------------------T
T ss_pred ccccccccccccccccccccceECCCCeEEEEcC----CCCEEEEeccc------------------------------C
Confidence 4789888653321 224679999999999985 46789998 11 0
Q ss_pred CCCCeeeEEEecCCCCceeeEec-CCceeeee
Q 038555 138 DPSPGNFTWAVERQDNPELMMWK-GSRKFQRS 168 (239)
Q Consensus 138 dps~G~fsl~ld~~g~~~l~~~~-~~~~yw~s 168 (239)
......+.+.|+.+|. |++++ ...+.|.+
T Consensus 49 ~~~~~~~~~~L~~~GN--lvl~d~~~~~lW~S 78 (114)
T PF01453_consen 49 GRGNSGCYLVLQDDGN--LVLYDSSGNVLWQS 78 (114)
T ss_dssp TSS-SSEEEEEETTSE--EEEEETTSEEEEES
T ss_pred CccccCeEEEEeCCCC--EEEEeecceEEEee
Confidence 0011356788888886 44444 56788987
No 8
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=26.69 E-value=2.1e+02 Score=20.08 Aligned_cols=7 Identities=43% Similarity=1.047 Sum_probs=5.8
Q ss_pred CeeeEEE
Q 038555 141 PGNFTWA 147 (239)
Q Consensus 141 ~G~fsl~ 147 (239)
+|.|+++
T Consensus 75 ~G~Y~~~ 81 (82)
T PF12690_consen 75 PGEYTLE 81 (82)
T ss_dssp SEEEEEE
T ss_pred CceEEEe
Confidence 8998875
No 9
>PF12197 lci: Bacillus cereus group antimicrobial protein; InterPro: IPR020976 This entry represents antimicrobial peptides from bacteria of approximately 40 amino acids in length.; PDB: 2B9K_A.
Probab=22.85 E-value=2.1e+02 Score=18.03 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=18.3
Q ss_pred EEEeCCCeeEEeeecCCCCCceEEEEEEecCCCCcEEEEe
Q 038555 7 TLVSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVA 46 (239)
Q Consensus 7 ~l~S~~g~F~lgF~~~~~~~~~yl~iw~~~~~~~tvvW~A 46 (239)
-+.|++|.|+--|...+ ..+||-=.+.+.+..+ |+|
T Consensus 4 ~~~~~nGvFAN~F~~~G--itWYfKg~~~~~~~g~--~vg 39 (45)
T PF12197_consen 4 CMYSSNGVFANSFSDDG--ITWYFKGKHTKNSDGT--WVG 39 (45)
T ss_dssp EEEETT-----EEEETT--EEEEEEEEEE-TTTSS--EEE
T ss_pred EEEcCCCceEEEEEcCC--cEEEEeeeEEecCCcc--EEE
Confidence 35799999999998754 5677655544433333 554
No 10
>PHA00149 DNA encapsidation protein
Probab=21.94 E-value=1.9e+02 Score=25.87 Aligned_cols=39 Identities=23% Similarity=0.479 Sum_probs=29.9
Q ss_pred EeCCCeeEEeeecCCCCCceEEEEEEecCCCCcEEEEecCCCCCC
Q 038555 9 VSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPIN 53 (239)
Q Consensus 9 ~S~~g~F~lgF~~~~~~~~~yl~iw~~~~~~~tvvW~Anr~~pv~ 53 (239)
.+.++.|.++++.++. |++||... ..-.||.|.+-.|-.
T Consensus 234 ~~~~~k~~ysi~~~g~----~~~vwvd~--~~~~~y~~~~~dp~~ 272 (331)
T PHA00149 234 RSKNSKFVFSIRYNGN----YYTVWVDL--TQMLVYIATAHDPST 272 (331)
T ss_pred hccCceEEEEEEECCe----EEEEEEEc--cceEEEEecccCCCC
Confidence 3788999999998764 78999653 356899998876544
Done!