BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038558
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
Length = 87
Score = 35.8 bits (81), Expect = 0.042, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 306 ERERRTRISRKLKKLQDLVPNMD-KQTSYSDMLDLAVQHIKGLQNQVENLHKDLE 359
ER+RR I L+D VP++ ++ S + +LD A ++I+ ++ +V L +D++
Sbjct: 12 ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKVHTLQQDID 66
>pdb|3N6X|A Chain A, Crystal Structure Of A Putative Glutathionylspermidine
Synth (Mfla_0391) From Methylobacillus Flagellatus Kt At
2.35 A R
Length = 474
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 322 DLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHCTCGCKPTS 369
D+VP + + ++ + D A+Q +K L + +++ D E G P+S
Sbjct: 73 DVVPRILSASEWARLSDGAIQRVKALNXFLHDVYHDQEIIKAGIVPSS 120
>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna
pdb|1NKP|E Chain E, Crystal Structure Of Myc-Max Recognizing Dna
Length = 83
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 306 ERERRTRISRKLKKLQDLVPNMD-KQTSYSDMLDLAVQHIKGLQNQVENLHKDLE 359
ER+RR I L+D VP++ ++ S + +LD A ++I+ ++ + +D++
Sbjct: 10 ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64
>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna
pdb|1NLW|E Chain E, Crystal Structure Of Mad-Max Recognizing Dna
Length = 76
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 306 ERERRTRISRKLKKLQDLVPNMD-KQTSYSDMLDLAVQHIKGLQNQVENLHKDLE 359
ER+RR I L+D VP++ ++ S + +LD A ++I+ ++ + +D++
Sbjct: 9 ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 63
>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric
BHLHZ DOMAIN
Length = 86
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 306 ERERRTRISRKLKKLQDLVPNMD-KQTSYSDMLDLAVQHIKGLQNQVENLHKDLE 359
ER+RR I L+D VP++ ++ S + +LD A ++I+ ++ + +D++
Sbjct: 11 ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 65
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
Length = 80
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 306 ERERRTRISRKLKKLQDLVPNMD-KQTSYSDMLDLAVQHIKGLQNQVENLHKDLE 359
ER+RR I L+D VP++ ++ S + +LD A ++I+ ++ + +D++
Sbjct: 20 ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 74
>pdb|1AM9|A Chain A, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|B Chain B, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|C Chain C, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|D Chain D, Human Srebp-1a Bound To Ldl Receptor Promoter
Length = 82
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 295 RGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENL 354
RG + E+ R+ I+ K+ +L+DLV + + + S +L A+ +I+ LQ+ + L
Sbjct: 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL 62
Query: 355 HKD 357
++
Sbjct: 63 KQE 65
>pdb|1UKL|C Chain C, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|D Chain D, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|E Chain E, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|F Chain F, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 61
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 310 RTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKD 357
R+ I+ K+ +L+DLV D + S +L A+ +IK LQ L ++
Sbjct: 1 RSSINDKIIELKDLVXGTDAKXHKSGVLRKAIDYIKYLQQVNHKLRQE 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,620,252
Number of Sequences: 62578
Number of extensions: 281528
Number of successful extensions: 667
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 15
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)