Query 038558
Match_columns 369
No_of_seqs 213 out of 907
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 12:15:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 6.2E-13 1.3E-17 98.1 5.2 53 300-352 6-60 (60)
2 smart00353 HLH helix loop heli 99.3 2.7E-12 5.9E-17 93.2 6.6 50 303-352 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.3 2.1E-12 4.6E-17 95.3 5.7 48 301-348 4-55 (55)
4 KOG1318 Helix loop helix trans 99.2 2.1E-11 4.5E-16 123.4 5.2 58 297-354 232-292 (411)
5 KOG1319 bHLHZip transcription 98.8 3E-09 6.5E-14 98.9 4.1 60 300-359 64-129 (229)
6 KOG4304 Transcriptional repres 98.7 1.3E-08 2.8E-13 97.6 3.1 53 301-353 35-94 (250)
7 KOG3960 Myogenic helix-loop-he 98.5 1.6E-07 3.4E-12 90.6 7.1 72 288-359 105-180 (284)
8 KOG3561 Aryl-hydrocarbon recep 98.3 6.5E-07 1.4E-11 97.4 5.5 52 299-350 21-75 (803)
9 KOG2588 Predicted DNA-binding 98.3 3.7E-07 8E-12 100.0 3.4 65 296-360 274-338 (953)
10 KOG2483 Upstream transcription 98.2 2.9E-06 6.3E-11 81.0 6.4 62 299-360 60-123 (232)
11 PLN03217 transcription factor 97.6 0.00013 2.7E-09 60.9 6.1 52 310-361 19-75 (93)
12 KOG4029 Transcription factor H 97.6 5.8E-05 1.3E-09 70.7 3.6 57 302-358 113-172 (228)
13 KOG0561 bHLH transcription fac 97.1 0.0003 6.5E-09 70.0 3.2 52 302-353 64-116 (373)
14 KOG3910 Helix loop helix trans 94.8 0.021 4.4E-07 60.4 3.1 53 302-354 530-585 (632)
15 KOG4447 Transcription factor T 91.6 0.1 2.2E-06 48.0 1.8 50 302-351 82-132 (173)
16 KOG3558 Hypoxia-inducible fact 89.1 0.25 5.4E-06 54.2 2.5 42 305-346 53-97 (768)
17 KOG3559 Transcriptional regula 85.3 0.88 1.9E-05 47.8 3.7 46 303-348 6-54 (598)
18 KOG4395 Transcription factor A 83.8 1.6 3.4E-05 43.3 4.6 51 303-353 179-231 (285)
19 KOG3560 Aryl-hydrocarbon recep 83.1 1.1 2.5E-05 48.3 3.5 40 306-346 33-76 (712)
20 KOG3898 Transcription factor N 73.5 2.2 4.8E-05 41.5 2.1 47 303-349 77-125 (254)
21 KOG3582 Mlx interactors and re 39.5 8.6 0.00019 42.9 -0.4 55 301-355 654-712 (856)
22 PRK13702 replication protein; 35.4 75 0.0016 26.9 4.5 43 300-342 22-76 (85)
23 KOG3582 Mlx interactors and re 35.2 15 0.00032 41.1 0.5 59 300-361 789-851 (856)
24 KOG4447 Transcription factor T 34.5 26 0.00057 32.7 1.9 24 305-328 29-52 (173)
25 COG3074 Uncharacterized protei 32.2 56 0.0012 27.0 3.3 24 337-360 13-36 (79)
26 PF04508 Pox_A_type_inc: Viral 32.2 42 0.00091 22.0 2.0 19 344-362 3-21 (23)
27 PF13334 DUF4094: Domain of un 29.2 76 0.0016 26.8 3.7 31 332-362 63-93 (95)
28 COG0556 UvrB Helicase subunit 27.0 1E+02 0.0023 34.1 5.1 29 302-330 563-591 (663)
29 PF09849 DUF2076: Uncharacteri 26.0 2.3E+02 0.0049 27.9 6.8 25 333-360 49-73 (247)
30 PF14689 SPOB_a: Sensor_kinase 25.3 1.6E+02 0.0034 22.6 4.5 41 307-355 17-57 (62)
31 PRK15422 septal ring assembly 24.9 93 0.002 26.0 3.4 24 336-359 12-35 (79)
32 PF06005 DUF904: Protein of un 24.5 1E+02 0.0022 24.9 3.5 22 337-358 13-34 (72)
33 PF14992 TMCO5: TMCO5 family 23.2 99 0.0021 31.1 3.8 27 334-360 143-169 (280)
34 PF10046 BLOC1_2: Biogenesis o 22.1 42 0.00091 28.0 0.9 42 311-352 52-97 (99)
35 COG1076 DjlA DnaJ-domain-conta 21.6 60 0.0013 29.5 1.9 59 300-360 114-172 (174)
36 PF04420 CHD5: CHD5-like prote 21.3 1.2E+02 0.0025 27.5 3.7 47 303-361 39-85 (161)
37 PF13805 Pil1: Eisosome compon 21.2 1.9E+02 0.0042 28.9 5.4 22 306-327 143-164 (271)
38 PF13870 DUF4201: Domain of un 21.1 4E+02 0.0087 24.0 7.0 55 305-361 116-171 (177)
39 PF03233 Cauli_AT: Aphid trans 21.0 1.2E+02 0.0025 28.5 3.6 52 306-360 109-160 (163)
40 PF12344 UvrB: Ultra-violet re 20.9 1.3E+02 0.0027 22.6 3.1 27 303-329 13-39 (44)
41 PF14197 Cep57_CLD_2: Centroso 20.7 1.3E+02 0.0027 24.1 3.3 29 333-361 38-66 (69)
42 TIGR00986 3a0801s05tom22 mitoc 20.6 66 0.0014 29.6 1.9 35 311-346 49-83 (145)
43 KOG4571 Activating transcripti 20.1 87 0.0019 31.8 2.7 39 315-353 252-290 (294)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.37 E-value=6.2e-13 Score=98.06 Aligned_cols=53 Identities=34% Similarity=0.574 Sum_probs=48.6
Q ss_pred CCccHHHHHHHHHHHHHHHHHhhccCCC--CCCCCHhhHHHHHHHHHHHHHHHHH
Q 038558 300 HPRSIAERERRTRISRKLKKLQDLVPNM--DKQTSYSDMLDLAVQHIKGLQNQVE 352 (369)
Q Consensus 300 ~~HsiaERrRReRINer~~~Lr~LVP~~--~K~tdKAsILdeAI~YIK~LQ~qVk 352 (369)
..|+..||+||++||+.|..|+.|||.. ..+.+|+.||+.||+||+.|+.+++
T Consensus 6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4699999999999999999999999999 3557999999999999999998863
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.34 E-value=2.7e-12 Score=93.24 Aligned_cols=50 Identities=34% Similarity=0.644 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHHHHHHHHhhccCCC--CCCCCHhhHHHHHHHHHHHHHHHHH
Q 038558 303 SIAERERRTRISRKLKKLQDLVPNM--DKQTSYSDMLDLAVQHIKGLQNQVE 352 (369)
Q Consensus 303 siaERrRReRINer~~~Lr~LVP~~--~K~tdKAsILdeAI~YIK~LQ~qVk 352 (369)
+..||+||++||+.|..|+.|||.+ ..+.+|++||++||+||+.|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999974 3446999999999999999999886
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.33 E-value=2.1e-12 Score=95.33 Aligned_cols=48 Identities=33% Similarity=0.522 Sum_probs=44.6
Q ss_pred CccHHHHHHHHHHHHHHHHHhhccCCC----CCCCCHhhHHHHHHHHHHHHH
Q 038558 301 PRSIAERERRTRISRKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 348 (369)
Q Consensus 301 ~HsiaERrRReRINer~~~Lr~LVP~~----~K~tdKAsILdeAI~YIK~LQ 348 (369)
.|+..||+||++||+.|.+|+.|||.+ ..+++|++||+.||+||+.||
T Consensus 4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 489999999999999999999999997 344799999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.17 E-value=2.1e-11 Score=123.42 Aligned_cols=58 Identities=22% Similarity=0.420 Sum_probs=50.7
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHhhccCCCCC---CCCHhhHHHHHHHHHHHHHHHHHHH
Q 038558 297 CATHPRSIAERERRTRISRKLKKLQDLVPNMDK---QTSYSDMLDLAVQHIKGLQNQVENL 354 (369)
Q Consensus 297 ~at~~HsiaERrRReRINer~~~Lr~LVP~~~K---~tdKAsILdeAI~YIK~LQ~qVk~L 354 (369)
++++.|+++|||||++||++|++|..|||.|.. +.+|..||..+++||+.||+..++.
T Consensus 232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999952 2489999999999999999876643
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.81 E-value=3e-09 Score=98.93 Aligned_cols=60 Identities=25% Similarity=0.386 Sum_probs=53.0
Q ss_pred CCccHHHHHHHHHHHHHHHHHhhccCCCCC------CCCHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 038558 300 HPRSIAERERRTRISRKLKKLQDLVPNMDK------QTSYSDMLDLAVQHIKGLQNQVENLHKDLE 359 (369)
Q Consensus 300 ~~HsiaERrRReRINer~~~Lr~LVP~~~K------~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e 359 (369)
..|.-+||+||+.|+..+..|++|||.|.. ++.||.||.++|+||.+|.+++.+.++++.
T Consensus 64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s 129 (229)
T KOG1319|consen 64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVS 129 (229)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 349999999999999999999999998864 258999999999999999998888776654
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.65 E-value=1.3e-08 Score=97.57 Aligned_cols=53 Identities=36% Similarity=0.644 Sum_probs=46.3
Q ss_pred CccHHHHHHHHHHHHHHHHHhhccCCCCCC-------CCHhhHHHHHHHHHHHHHHHHHH
Q 038558 301 PRSIAERERRTRISRKLKKLQDLVPNMDKQ-------TSYSDMLDLAVQHIKGLQNQVEN 353 (369)
Q Consensus 301 ~HsiaERrRReRINer~~~Lr~LVP~~~K~-------tdKAsILdeAI~YIK~LQ~qVk~ 353 (369)
.|-+.||+||+|||+.|.+|++|||.+-|+ ++||+||+.||+|+|.||.+...
T Consensus 35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 467999999999999999999999976543 48999999999999999975443
No 7
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.54 E-value=1.6e-07 Score=90.63 Aligned_cols=72 Identities=18% Similarity=0.354 Sum_probs=60.1
Q ss_pred CccccccCCCCCCCc---cHHHHHHHHHHHHHHHHH-hhccCCCCCCCCHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 038558 288 PCKIRAKRGCATHPR---SIAERERRTRISRKLKKL-QDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLE 359 (369)
Q Consensus 288 p~k~RakRg~at~~H---siaERrRReRINer~~~L-r~LVP~~~K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e 359 (369)
.||+.+|+....+.+ .+.||||-.|+||.|.+| |.-++|.++.+.|+.||..||+||+.||.-++++.+...
T Consensus 105 ackackrks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 105 ACKACKRKSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred hhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 466666655444444 466999999999999999 789999999999999999999999999999998876544
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.31 E-value=6.5e-07 Score=97.40 Aligned_cols=52 Identities=25% Similarity=0.505 Sum_probs=48.1
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhhccCCCC---CCCCHhhHHHHHHHHHHHHHHH
Q 038558 299 THPRSIAERERRTRISRKLKKLQDLVPNMD---KQTSYSDMLDLAVQHIKGLQNQ 350 (369)
Q Consensus 299 t~~HsiaERrRReRINer~~~Lr~LVP~~~---K~tdKAsILdeAI~YIK~LQ~q 350 (369)
+.+|+.+|||||+++|..|.+|.+|||.|. .+.||-.||.+||++||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 467999999999999999999999999998 5579999999999999999885
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.30 E-value=3.7e-07 Score=100.04 Aligned_cols=65 Identities=28% Similarity=0.396 Sum_probs=58.1
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038558 296 GCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEH 360 (369)
Q Consensus 296 g~at~~HsiaERrRReRINer~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e~ 360 (369)
+.++..|+++|||-|..||++|.+|++|||+..-+..|..+|..||+||++|+...+.|+++.+.
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~ 338 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENAS 338 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhh
Confidence 35678899999999999999999999999999876899999999999999999988877765544
No 10
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.18 E-value=2.9e-06 Score=81.00 Aligned_cols=62 Identities=26% Similarity=0.466 Sum_probs=51.8
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhhccCCCCCCC--CHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038558 299 THPRSIAERERRTRISRKLKKLQDLVPNMDKQT--SYSDMLDLAVQHIKGLQNQVENLHKDLEH 360 (369)
Q Consensus 299 t~~HsiaERrRReRINer~~~Lr~LVP~~~K~t--dKAsILdeAI~YIK~LQ~qVk~L~~~~e~ 360 (369)
+.-|+..||+||..|.+.|..|+.+||..+..+ ..+.||++|++||+.|+.+..+....+++
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~ 123 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIED 123 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 345899999999999999999999999887533 36999999999999999877666654444
No 11
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.64 E-value=0.00013 Score=60.90 Aligned_cols=52 Identities=25% Similarity=0.434 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhccCCCCC-----CCCHhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038558 310 RTRISRKLKKLQDLVPNMDK-----QTSYSDMLDLAVQHIKGLQNQVENLHKDLEHC 361 (369)
Q Consensus 310 ReRINer~~~Lr~LVP~~~K-----~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e~~ 361 (369)
-+.|+|.+.+||.|+|.... +...+-||+||+.||+.|+.+|..|.+++...
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~L 75 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSEL 75 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999996532 24788899999999999999999999887653
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.56 E-value=5.8e-05 Score=70.66 Aligned_cols=57 Identities=26% Similarity=0.370 Sum_probs=50.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhhccCCC---CCCCCHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 038558 302 RSIAERERRTRISRKLKKLQDLVPNM---DKQTSYSDMLDLAVQHIKGLQNQVENLHKDL 358 (369)
Q Consensus 302 HsiaERrRReRINer~~~Lr~LVP~~---~K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~ 358 (369)
++..||.|=..+|..|..||.+||.. +|+..|.++|..||.||++|++-++.-....
T Consensus 113 ~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 113 RNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 56779999999999999999999943 5678999999999999999999888776554
No 13
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.14 E-value=0.0003 Score=70.01 Aligned_cols=52 Identities=21% Similarity=0.349 Sum_probs=44.6
Q ss_pred ccHHHHHHHHHHHHHHHHHhhccCCCC-CCCCHhhHHHHHHHHHHHHHHHHHH
Q 038558 302 RSIAERERRTRISRKLKKLQDLVPNMD-KQTSYSDMLDLAVQHIKGLQNQVEN 353 (369)
Q Consensus 302 HsiaERrRReRINer~~~Lr~LVP~~~-K~tdKAsILdeAI~YIK~LQ~qVk~ 353 (369)
-+-.||||=.-||-.|..||.|+|.-+ .+++||.||+.+.+||..|+.+..+
T Consensus 64 ANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ 116 (373)
T KOG0561|consen 64 ANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTE 116 (373)
T ss_pred hcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccc
Confidence 356799999999999999999999655 2379999999999999999875443
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=94.84 E-value=0.021 Score=60.43 Aligned_cols=53 Identities=26% Similarity=0.315 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhhccC---CCCCCCCHhhHHHHHHHHHHHHHHHHHHH
Q 038558 302 RSIAERERRTRISRKLKKLQDLVP---NMDKQTSYSDMLDLAVQHIKGLQNQVENL 354 (369)
Q Consensus 302 HsiaERrRReRINer~~~Lr~LVP---~~~K~tdKAsILdeAI~YIK~LQ~qVk~L 354 (369)
.+..||.|=..|||.|++|..+.- +.+|...|.-||-.||.-|-.|++||.+-
T Consensus 530 NNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 530 NNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred hhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 466788888899999999987765 34454589999999999999999999863
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=91.59 E-value=0.1 Score=48.04 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=43.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhhccCCCC-CCCCHhhHHHHHHHHHHHHHHHH
Q 038558 302 RSIAERERRTRISRKLKKLQDLVPNMD-KQTSYSDMLDLAVQHIKGLQNQV 351 (369)
Q Consensus 302 HsiaERrRReRINer~~~Lr~LVP~~~-K~tdKAsILdeAI~YIK~LQ~qV 351 (369)
|++-||+|-..+|+.|..||.+||... .+.+|.-.|..|-.||-+|=+-.
T Consensus 82 anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 82 ANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 789999999999999999999999654 23699999999999999997643
No 16
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=89.14 E-value=0.25 Score=54.19 Aligned_cols=42 Identities=19% Similarity=0.363 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCC---CCCCHhhHHHHHHHHHHH
Q 038558 305 AERERRTRISRKLKKLQDLVPNMD---KQTSYSDMLDLAVQHIKG 346 (369)
Q Consensus 305 aERrRReRINer~~~Lr~LVP~~~---K~tdKAsILdeAI~YIK~ 346 (369)
|-|.||.|=|+-|.+|..+||-.. -++|||+|+..||-|+|-
T Consensus 53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 579999999999999999999333 457999999999999974
No 17
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=85.27 E-value=0.88 Score=47.80 Aligned_cols=46 Identities=22% Similarity=0.285 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHHHHHHHHhhccCCC---CCCCCHhhHHHHHHHHHHHHH
Q 038558 303 SIAERERRTRISRKLKKLQDLVPNM---DKQTSYSDMLDLAVQHIKGLQ 348 (369)
Q Consensus 303 siaERrRReRINer~~~Lr~LVP~~---~K~tdKAsILdeAI~YIK~LQ 348 (369)
+-+.|.||++=|--|.+|.+|+|-. ..+.||++|+..|-.|||.-+
T Consensus 6 KnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~ 54 (598)
T KOG3559|consen 6 KNAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRN 54 (598)
T ss_pred hhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHH
Confidence 3457999999999999999999954 345799999999999999654
No 18
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=83.84 E-value=1.6 Score=43.28 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHHHHHHHHhhccCCCC--CCCCHhhHHHHHHHHHHHHHHHHHH
Q 038558 303 SIAERERRTRISRKLKKLQDLVPNMD--KQTSYSDMLDLAVQHIKGLQNQVEN 353 (369)
Q Consensus 303 siaERrRReRINer~~~Lr~LVP~~~--K~tdKAsILdeAI~YIK~LQ~qVk~ 353 (369)
+..||+|=..+|..|..|+..||..+ ++++|-..|..|-.||-.|-...+.
T Consensus 179 narErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~ 231 (285)
T KOG4395|consen 179 NARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDL 231 (285)
T ss_pred chHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcC
Confidence 66799999999999999999999765 5679999999999999998776643
No 19
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=83.05 E-value=1.1 Score=48.33 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCC----CCCCCHhhHHHHHHHHHHH
Q 038558 306 ERERRTRISRKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKG 346 (369)
Q Consensus 306 ERrRReRINer~~~Lr~LVP~~----~K~tdKAsILdeAI~YIK~ 346 (369)
-+|-|+|+|--|..|..|+|-. +| +||.+||..+|.|++-
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisK-LDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISK-LDKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhh-hhhhhhhhhhHHHHHH
Confidence 4788999999999999999954 45 6999999999999864
No 20
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=73.46 E-value=2.2 Score=41.47 Aligned_cols=47 Identities=26% Similarity=0.352 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHHHHHHHhhccCCCC--CCCCHhhHHHHHHHHHHHHHH
Q 038558 303 SIAERERRTRISRKLKKLQDLVPNMD--KQTSYSDMLDLAVQHIKGLQN 349 (369)
Q Consensus 303 siaERrRReRINer~~~Lr~LVP~~~--K~tdKAsILdeAI~YIK~LQ~ 349 (369)
+.-||.|=-.+|+.|..||++||... .+..|...|.-|-.||..|++
T Consensus 77 NaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 77 NARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred cchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 44577777789999999999999432 235999999999999999885
No 21
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=39.53 E-value=8.6 Score=42.91 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=44.6
Q ss_pred CccHHHHHHHHHHHHHHHHHhhccCCCCCCC----CHhhHHHHHHHHHHHHHHHHHHHH
Q 038558 301 PRSIAERERRTRISRKLKKLQDLVPNMDKQT----SYSDMLDLAVQHIKGLQNQVENLH 355 (369)
Q Consensus 301 ~HsiaERrRReRINer~~~Lr~LVP~~~K~t----dKAsILdeAI~YIK~LQ~qVk~L~ 355 (369)
-|.-+|.+||..|.-.+..|-.++-+..+.. .++.-+..+++||..++.+...+.
T Consensus 654 t~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~ 712 (856)
T KOG3582|consen 654 THISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQ 712 (856)
T ss_pred cCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccc
Confidence 3788999999999999999999999877543 455569999999988876554444
No 22
>PRK13702 replication protein; Provisional
Probab=35.41 E-value=75 Score=26.87 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=31.2
Q ss_pred CCccHHHHHHHH--HHHHHHHHHhhccCCCCCC----------CCHhhHHHHHHH
Q 038558 300 HPRSIAERERRT--RISRKLKKLQDLVPNMDKQ----------TSYSDMLDLAVQ 342 (369)
Q Consensus 300 ~~HsiaERrRRe--RINer~~~Lr~LVP~~~K~----------tdKAsILdeAI~ 342 (369)
.|.+.+||.|.- |..+.-++|+-+||+.-|. ...|.||+..|+
T Consensus 22 ~Pls~aErQr~svaRKr~THkei~vfi~n~lK~~L~elc~~~glTQAe~IE~LIe 76 (85)
T PRK13702 22 NPLSAAEKQRASVARKRATHKEIKVFIQNPLKDKLMELCEEEGLTQAEMIERLIE 76 (85)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhheeecHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 789999999975 6777888999999976441 355566555554
No 23
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=35.25 E-value=15 Score=41.14 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=48.7
Q ss_pred CCccHHHHHHHHHHHHHHHHHhhccCCCC----CCCCHhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038558 300 HPRSIAERERRTRISRKLKKLQDLVPNMD----KQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHC 361 (369)
Q Consensus 300 ~~HsiaERrRReRINer~~~Lr~LVP~~~----K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e~~ 361 (369)
..|.-+||+||-.+-+++..|-.|+|..- +.+.+++||. +.||.+++.-+.+.+..+..
T Consensus 789 a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~k 851 (856)
T KOG3582|consen 789 AGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEGK 851 (856)
T ss_pred cchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhhh
Confidence 34677899999999999999999999543 4568999999 89999999888887765543
No 24
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=34.53 E-value=26 Score=32.68 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCC
Q 038558 305 AERERRTRISRKLKKLQDLVPNMD 328 (369)
Q Consensus 305 aERrRReRINer~~~Lr~LVP~~~ 328 (369)
.||.|..++++.+.-|+.|+|++.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgsp 52 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSP 52 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCC
Confidence 489999999999999999999876
No 25
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.23 E-value=56 Score=26.98 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 038558 337 LDLAVQHIKGLQNQVENLHKDLEH 360 (369)
Q Consensus 337 LdeAI~YIK~LQ~qVk~L~~~~e~ 360 (369)
+..||+.|.-||..|++|+++...
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~ 36 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 567899999999999988876553
No 26
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=32.19 E-value=42 Score=22.03 Aligned_cols=19 Identities=26% Similarity=0.746 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhhhccc
Q 038558 344 IKGLQNQVENLHKDLEHCT 362 (369)
Q Consensus 344 IK~LQ~qVk~L~~~~e~~t 362 (369)
|..|+.+|..|+.++..|+
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5678888888988888875
No 27
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=29.17 E-value=76 Score=26.81 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=23.3
Q ss_pred CHhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 038558 332 SYSDMLDLAVQHIKGLQNQVENLHKDLEHCT 362 (369)
Q Consensus 332 dKAsILdeAI~YIK~LQ~qVk~L~~~~e~~t 362 (369)
|...=+.++-+=|+.|.+.|..|+.|++..+
T Consensus 63 di~~eV~kTh~aIq~LdKtIS~LEMELAaAR 93 (95)
T PF13334_consen 63 DIMGEVSKTHEAIQSLDKTISSLEMELAAAR 93 (95)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444446777778899999999999987643
No 28
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=26.97 E-value=1e+02 Score=34.11 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 038558 302 RSIAERERRTRISRKLKKLQDLVPNMDKQ 330 (369)
Q Consensus 302 HsiaERrRReRINer~~~Lr~LVP~~~K~ 330 (369)
+.+.|-.||.+|+..+.+.+.++|..-++
T Consensus 563 ~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K 591 (663)
T COG0556 563 KAIDETERRREIQMAYNEEHGITPQTIKK 591 (663)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhhhh
Confidence 35779999999999999999999976543
No 29
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=25.99 E-value=2.3e+02 Score=27.94 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=16.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038558 333 YSDMLDLAVQHIKGLQNQVENLHKDLEH 360 (369)
Q Consensus 333 KAsILdeAI~YIK~LQ~qVk~L~~~~e~ 360 (369)
++.|++.| ||.|+.+|++|+.++..
T Consensus 49 ~vlvQE~A---L~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 49 TVLVQEQA---LKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 44555555 56788888888887643
No 30
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=25.31 E-value=1.6e+02 Score=22.61 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHHHHHHH
Q 038558 307 RERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLH 355 (369)
Q Consensus 307 RrRReRINer~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~qVk~L~ 355 (369)
|.-|=-+...+..+..|+--.. .++|.+||+.+-++++.+.
T Consensus 17 R~~RHD~~NhLqvI~gllqlg~--------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQLGK--------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHH
Confidence 5555567777777777774432 4789999999999988874
No 31
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=24.87 E-value=93 Score=25.99 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 038558 336 MLDLAVQHIKGLQNQVENLHKDLE 359 (369)
Q Consensus 336 ILdeAI~YIK~LQ~qVk~L~~~~e 359 (369)
-+..||+-|.-||.+|++|+++..
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~ 35 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999887643
No 32
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.55 E-value=1e+02 Score=24.92 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 038558 337 LDLAVQHIKGLQNQVENLHKDL 358 (369)
Q Consensus 337 LdeAI~YIK~LQ~qVk~L~~~~ 358 (369)
+..||+-|.-||.+|.+|+++.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n 34 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKN 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999998763
No 33
>PF14992 TMCO5: TMCO5 family
Probab=23.18 E-value=99 Score=31.13 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038558 334 SDMLDLAVQHIKGLQNQVENLHKDLEH 360 (369)
Q Consensus 334 AsILdeAI~YIK~LQ~qVk~L~~~~e~ 360 (369)
+.+..+++.||+.||+.+++++++++-
T Consensus 143 ~~l~eDq~~~i~klkE~L~rmE~ekE~ 169 (280)
T PF14992_consen 143 HQLCEDQANEIKKLKEKLRRMEEEKEM 169 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445899999999999999888876653
No 34
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=22.14 E-value=42 Score=28.05 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhccCCCCCCCCHhhHHHHHHH----HHHHHHHHHH
Q 038558 311 TRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQ----HIKGLQNQVE 352 (369)
Q Consensus 311 eRINer~~~Lr~LVP~~~K~tdKAsILdeAI~----YIK~LQ~qVk 352 (369)
+.++++..+|+..+-..+..-...+-|+.+|. |+|.|+.+++
T Consensus 52 ~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 52 EDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555544444332234455555554 4444444444
No 35
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.65 E-value=60 Score=29.48 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=48.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038558 300 HPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEH 360 (369)
Q Consensus 300 ~~HsiaERrRReRINer~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e~ 360 (369)
++...-++..+..+.+..++++.++-.-.. +++..+..=.+||+.|+++++++.+..+.
T Consensus 114 ~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~--d~a~~~~~~~e~~~~~~~~~~~i~~a~~~ 172 (174)
T COG1076 114 DALKVLGVEIKADQDAIKKAYRKLLSEQHP--DKAAAKGLKLEFIEKLKEKLQEIQEAYED 172 (174)
T ss_pred hHHHHhcCchhhhHHHHHHHHHHHHHhcCH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 345566777888899999999999987773 88998888899999999999999887653
No 36
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=21.33 E-value=1.2e+02 Score=27.51 Aligned_cols=47 Identities=23% Similarity=0.351 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHHHHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038558 303 SIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHC 361 (369)
Q Consensus 303 siaERrRReRINer~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e~~ 361 (369)
...++.-|..|.+.-++++.+ ++.||=.+|.| |++++.+|++|+++.
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~i-----------S~qDeFAkwaK-l~Rk~~kl~~el~~~ 85 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAI-----------SAQDEFAKWAK-LNRKLDKLEEELEKL 85 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS------------TTTSHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcC-----------CcHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344777777888877777766 22234556666 677777777777653
No 37
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=21.19 E-value=1.9e+02 Score=28.95 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCC
Q 038558 306 ERERRTRISRKLKKLQDLVPNM 327 (369)
Q Consensus 306 ERrRReRINer~~~Lr~LVP~~ 327 (369)
=|.||.+|.+.|..|+.-=|..
T Consensus 143 ~R~~r~~l~d~I~kLk~k~P~s 164 (271)
T PF13805_consen 143 SRDRRRKLQDEIAKLKYKDPQS 164 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTT
T ss_pred HHHHhHHHHHHHHHHHhcCCCC
Confidence 5889999999999998876643
No 38
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.09 E-value=4e+02 Score=23.97 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCHhhH-HHHHHHHHHHHHHHHHHHHhhhhcc
Q 038558 305 AERERRTRISRKLKKLQDLVPNMDKQTSYSDM-LDLAVQHIKGLQNQVENLHKDLEHC 361 (369)
Q Consensus 305 aERrRReRINer~~~Lr~LVP~~~K~tdKAsI-LdeAI~YIK~LQ~qVk~L~~~~e~~ 361 (369)
..+..|+++......|+.=...... ..... .+.+++++..|++.|+.|+.+.+..
T Consensus 116 ~~k~~r~k~~~~~~~l~~~~~~~~~--P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l 171 (177)
T PF13870_consen 116 RVKKERDKLRKQNKKLRQQGGLLGV--PALLRDYDKTKEEVEELRKEIKELERKVEIL 171 (177)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777655554433 12221 6789999999999999998876653
No 39
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=21.01 E-value=1.2e+02 Score=28.47 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038558 306 ERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEH 360 (369)
Q Consensus 306 ERrRReRINer~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e~ 360 (369)
|=.--..|..++.+|+..++...+ +.......=++||++.+.++++++.+.+
T Consensus 109 ~l~~L~e~snki~kLe~~~k~L~d---~Iv~~~~i~e~IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 109 LLPTLEEISNKIRKLETEVKKLKD---NIVTEKLIEELIKDFDERLKEIRDKIKK 160 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhh---hccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455677788888888887755 3677778888999999999998887653
No 40
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=20.86 E-value=1.3e+02 Score=22.61 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHHHHHhhccCCCCC
Q 038558 303 SIAERERRTRISRKLKKLQDLVPNMDK 329 (369)
Q Consensus 303 siaERrRReRINer~~~Lr~LVP~~~K 329 (369)
.+.|=.||..|...+.+-..++|..-+
T Consensus 13 ai~eT~rRR~~Q~~yN~~h~ItP~ti~ 39 (44)
T PF12344_consen 13 AIDETNRRREIQIAYNKEHGITPKTIK 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcCcC
Confidence 577899999999999999999997654
No 41
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=20.71 E-value=1.3e+02 Score=24.11 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=24.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038558 333 YSDMLDLAVQHIKGLQNQVENLHKDLEHC 361 (369)
Q Consensus 333 KAsILdeAI~YIK~LQ~qVk~L~~~~e~~ 361 (369)
-..=|.+|+.-|..|+.++..|+++++.+
T Consensus 38 ~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 38 AERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44558899999999999999999988765
No 42
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=20.62 E-value=66 Score=29.56 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhccCCCCCCCCHhhHHHHHHHHHHH
Q 038558 311 TRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKG 346 (369)
Q Consensus 311 eRINer~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~ 346 (369)
+-|-|||.+|+++||..... .-.....-++.++|.
T Consensus 49 ETl~ERi~ALkDm~Pp~~R~-~i~~~~s~t~s~~ks 83 (145)
T TIGR00986 49 ETFTDRIYALKDIVPPTTRG-WIYHKYSTTTNFVKS 83 (145)
T ss_pred CcHHHHHHHHHhhCCHHHHH-HHHHHHHHHHHHHHH
Confidence 35777899999999966542 333344444444443
No 43
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=20.12 E-value=87 Score=31.77 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=24.9
Q ss_pred HHHHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHHHHH
Q 038558 315 RKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVEN 353 (369)
Q Consensus 315 er~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~qVk~ 353 (369)
+.+.+|+.|==.-.+..+.++=|++=|+|+|.|-..+.+
T Consensus 252 ~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 252 ALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444332223238899999999999988766654
Done!