Query 038558
Match_columns 369
No_of_seqs 213 out of 907
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 21:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.7 1.3E-16 4.5E-21 135.3 8.0 72 288-359 17-91 (118)
2 1am9_A Srebp-1A, protein (ster 99.7 4.4E-17 1.5E-21 130.0 3.9 64 299-362 7-70 (82)
3 1a0a_A BHLH, protein (phosphat 99.6 7.3E-16 2.5E-20 118.1 2.8 54 299-352 3-62 (63)
4 4h10_B Circadian locomoter out 99.5 3.4E-15 1.2E-19 117.4 3.7 56 300-355 10-65 (71)
5 1an4_A Protein (upstream stimu 99.5 4.2E-15 1.4E-19 113.1 3.1 55 298-352 5-64 (65)
6 1nkp_B MAX protein, MYC proto- 99.5 4.2E-14 1.4E-18 112.2 6.6 61 300-361 4-66 (83)
7 1hlo_A Protein (transcription 99.5 4.3E-14 1.5E-18 111.7 6.6 63 300-362 14-77 (80)
8 4h10_A ARYL hydrocarbon recept 99.5 5.2E-15 1.8E-19 116.6 0.1 52 299-350 10-64 (73)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 1.5E-13 5.3E-18 111.1 6.9 61 300-360 8-70 (88)
10 3u5v_A Protein MAX, transcript 99.4 2E-13 6.9E-18 108.2 4.8 56 300-355 7-65 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 2.9E-12 1E-16 102.2 7.5 60 301-360 4-65 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.1 1.6E-11 5.4E-16 95.6 2.4 52 300-351 14-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.0 3.5E-10 1.2E-14 85.9 6.1 51 302-352 6-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 3.2E-10 1.1E-14 108.5 6.5 53 299-351 13-65 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 8.4E-10 2.9E-14 107.0 3.2 52 299-351 14-69 (387)
16 4ath_A MITF, microphthalmia-as 98.7 1.5E-08 5.2E-13 82.0 6.8 51 309-359 3-56 (83)
17 2lfh_A DNA-binding protein inh 98.6 9.7E-09 3.3E-13 80.4 2.2 46 304-349 20-67 (68)
18 4aya_A DNA-binding protein inh 98.2 2.8E-06 9.4E-11 70.5 7.0 50 306-355 33-84 (97)
19 1p3q_Q VPS9P, vacuolar protein 54.7 15 0.00051 27.4 4.1 26 304-329 3-28 (54)
20 3muj_A Transcription factor CO 48.5 24 0.00081 30.9 5.1 36 312-347 95-133 (138)
21 2wt7_A Proto-oncogene protein 48.0 37 0.0013 25.2 5.4 17 306-322 1-17 (63)
22 2jee_A YIIU; FTSZ, septum, coi 37.7 24 0.00083 28.3 3.2 25 336-360 14-38 (81)
23 2er8_A Regulatory protein Leu3 31.4 31 0.0011 25.1 2.7 20 342-361 49-68 (72)
24 2jqq_A Conserved oligomeric go 30.8 25 0.00087 32.4 2.5 45 309-355 52-96 (204)
25 2wuj_A Septum site-determining 30.2 55 0.0019 23.9 3.8 28 334-361 26-53 (57)
26 3fx7_A Putative uncharacterize 29.8 1.1E+02 0.0038 25.0 6.0 41 309-358 46-86 (94)
27 1hwt_C Protein (heme activator 29.7 30 0.001 25.7 2.4 23 341-363 57-79 (81)
28 1f1f_A Cytochrome C6; heme, pr 29.6 89 0.0031 22.4 5.0 40 310-350 48-87 (89)
29 1zme_C Proline utilization tra 27.2 39 0.0013 24.3 2.6 19 340-358 49-67 (70)
30 2ke4_A CDC42-interacting prote 24.8 1.1E+02 0.0038 24.8 5.1 36 325-360 52-87 (98)
31 3ph2_B Cytochrome C6; photosyn 22.3 1.5E+02 0.0051 20.9 5.0 38 312-350 47-84 (86)
32 1gmj_A ATPase inhibitor; coile 21.9 1.5E+02 0.0053 23.8 5.3 43 310-361 35-77 (84)
33 1gdv_A Cytochrome C6; RED ALGA 21.8 1.6E+02 0.0053 20.8 5.0 36 313-349 47-82 (85)
34 1gd2_E Transcription factor PA 21.5 56 0.0019 25.2 2.6 12 310-321 24-35 (70)
35 1j1j_A Translin; testis/brain 21.3 2.7E+02 0.0092 25.5 7.6 54 306-360 29-93 (240)
36 3qb5_K Translin-associated pro 20.4 2.7E+02 0.0092 26.3 7.6 40 317-360 71-110 (290)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.66 E-value=1.3e-16 Score=135.28 Aligned_cols=72 Identities=22% Similarity=0.328 Sum_probs=52.5
Q ss_pred CccccccCCCCCCCccHHHHHHHHHHHHHHHHHhhccCCCCC---CCCHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 038558 288 PCKIRAKRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDK---QTSYSDMLDLAVQHIKGLQNQVENLHKDLE 359 (369)
Q Consensus 288 p~k~RakRg~at~~HsiaERrRReRINer~~~Lr~LVP~~~K---~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e 359 (369)
.++..+++++++.+|+++||+||++||++|.+|++|||.+.+ +.+|++||++||+||++||++++.|++..+
T Consensus 17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888999999999999999999999999999853 368999999999999999999999987544
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.65 E-value=4.4e-17 Score=130.02 Aligned_cols=64 Identities=23% Similarity=0.301 Sum_probs=58.5
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 038558 299 THPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHCT 362 (369)
Q Consensus 299 t~~HsiaERrRReRINer~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e~~t 362 (369)
+..|+++||+||++||++|.+|+.|||+++.+++|++||++||+||++||.+++.|+++.+...
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999999999966679999999999999999999999998876643
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.56 E-value=7.3e-16 Score=118.07 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=48.1
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhhccCCCC------CCCCHhhHHHHHHHHHHHHHHHHH
Q 038558 299 THPRSIAERERRTRISRKLKKLQDLVPNMD------KQTSYSDMLDLAVQHIKGLQNQVE 352 (369)
Q Consensus 299 t~~HsiaERrRReRINer~~~Lr~LVP~~~------K~tdKAsILdeAI~YIK~LQ~qVk 352 (369)
+.+|+++||+||++||+.|.+|+.|||.+. .+.+||+||++||+||+.||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 467999999999999999999999999763 335899999999999999998764
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.53 E-value=3.4e-15 Score=117.43 Aligned_cols=56 Identities=18% Similarity=0.343 Sum_probs=51.1
Q ss_pred CCccHHHHHHHHHHHHHHHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHHHHHHH
Q 038558 300 HPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLH 355 (369)
Q Consensus 300 ~~HsiaERrRReRINer~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~qVk~L~ 355 (369)
.+|+++||+||++||++|.+|+.|||....+.||++||++||+||+.||+++.=|+
T Consensus 10 ~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 10 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 56999999999999999999999999876557999999999999999999987653
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=4.2e-15 Score=113.06 Aligned_cols=55 Identities=22% Similarity=0.330 Sum_probs=49.4
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHhhccCCCCC-----CCCHhhHHHHHHHHHHHHHHHHH
Q 038558 298 ATHPRSIAERERRTRISRKLKKLQDLVPNMDK-----QTSYSDMLDLAVQHIKGLQNQVE 352 (369)
Q Consensus 298 at~~HsiaERrRReRINer~~~Lr~LVP~~~K-----~tdKAsILdeAI~YIK~LQ~qVk 352 (369)
.+..|+++||+||++||+.|.+|+.|||.+.. +.+|++||++||+||+.||++++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 34679999999999999999999999999873 36999999999999999998753
No 6
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.48 E-value=4.2e-14 Score=112.21 Aligned_cols=61 Identities=26% Similarity=0.452 Sum_probs=55.0
Q ss_pred CCccHHHHHHHHHHHHHHHHHhhccCCC--CCCCCHhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038558 300 HPRSIAERERRTRISRKLKKLQDLVPNM--DKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHC 361 (369)
Q Consensus 300 ~~HsiaERrRReRINer~~~Lr~LVP~~--~K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e~~ 361 (369)
..|+..||+||++||+.|..|+.|||.+ .| .+|++||..||+||+.|+.+++.|+.+++..
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999985 45 6999999999999999999999998777654
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=4.3e-14 Score=111.74 Aligned_cols=63 Identities=24% Similarity=0.426 Sum_probs=57.1
Q ss_pred CCccHHHHHHHHHHHHHHHHHhhccCCCC-CCCCHhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 038558 300 HPRSIAERERRTRISRKLKKLQDLVPNMD-KQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHCT 362 (369)
Q Consensus 300 ~~HsiaERrRReRINer~~~Lr~LVP~~~-K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e~~t 362 (369)
..|+..||+||.+||+.|..|+.|||.+. .+.+|++||..||+||+.|++++++|+.+++...
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999874 2379999999999999999999999999887654
No 8
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.46 E-value=5.2e-15 Score=116.64 Aligned_cols=52 Identities=29% Similarity=0.494 Sum_probs=46.6
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhhccCCCC---CCCCHhhHHHHHHHHHHHHHHH
Q 038558 299 THPRSIAERERRTRISRKLKKLQDLVPNMD---KQTSYSDMLDLAVQHIKGLQNQ 350 (369)
Q Consensus 299 t~~HsiaERrRReRINer~~~Lr~LVP~~~---K~tdKAsILdeAI~YIK~LQ~q 350 (369)
+..|+++||+||++||+.|.+|+.|||.|. .++||++||+.||+|||.||.-
T Consensus 10 R~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 10 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 467999999999999999999999999873 3369999999999999999853
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.43 E-value=1.5e-13 Score=111.14 Aligned_cols=61 Identities=21% Similarity=0.384 Sum_probs=53.8
Q ss_pred CCccHHHHHHHHHHHHHHHHHhhccCCCC--CCCCHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038558 300 HPRSIAERERRTRISRKLKKLQDLVPNMD--KQTSYSDMLDLAVQHIKGLQNQVENLHKDLEH 360 (369)
Q Consensus 300 ~~HsiaERrRReRINer~~~Lr~LVP~~~--K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e~ 360 (369)
..|++.||+||+.||++|..|+++||.+. ++.+|++||.+||+||++|+.+++.|..+++.
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~ 70 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999864 34699999999999999999999887765543
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.39 E-value=2e-13 Score=108.21 Aligned_cols=56 Identities=30% Similarity=0.377 Sum_probs=49.2
Q ss_pred CCccHHHHHHHHHHHHHHHHHhhccCC---CCCCCCHhhHHHHHHHHHHHHHHHHHHHH
Q 038558 300 HPRSIAERERRTRISRKLKKLQDLVPN---MDKQTSYSDMLDLAVQHIKGLQNQVENLH 355 (369)
Q Consensus 300 ~~HsiaERrRReRINer~~~Lr~LVP~---~~K~tdKAsILdeAI~YIK~LQ~qVk~L~ 355 (369)
..|+..||+||+.||++|.+|+.+||. .+|..+|+.||..||+||+.||+++++++
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999995 34544799999999999999999999875
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.32 E-value=2.9e-12 Score=102.19 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=53.7
Q ss_pred CccHHHHHHHHHHHHHHHHHhhccCCCC--CCCCHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038558 301 PRSIAERERRTRISRKLKKLQDLVPNMD--KQTSYSDMLDLAVQHIKGLQNQVENLHKDLEH 360 (369)
Q Consensus 301 ~HsiaERrRReRINer~~~Lr~LVP~~~--K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e~ 360 (369)
.|+..||+||..||+.|.+|+++||.+. .+.+|+.||..||+||+.|+.+.+.|..+++.
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~ 65 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ 65 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999663 23599999999999999999999998877664
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.12 E-value=1.6e-11 Score=95.57 Aligned_cols=52 Identities=19% Similarity=0.379 Sum_probs=46.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHhhccCCC-CCCCCHhhHHHHHHHHHHHHHHHH
Q 038558 300 HPRSIAERERRTRISRKLKKLQDLVPNM-DKQTSYSDMLDLAVQHIKGLQNQV 351 (369)
Q Consensus 300 ~~HsiaERrRReRINer~~~Lr~LVP~~-~K~tdKAsILdeAI~YIK~LQ~qV 351 (369)
..|+..||+|+..||+.|..|+.+||.. +++.+|+.||..||+||+.|++.+
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999965 355799999999999999999865
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.02 E-value=3.5e-10 Score=85.95 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=46.5
Q ss_pred ccHHHHHHHHHHHHHHHHHhhccCCCC--CCCCHhhHHHHHHHHHHHHHHHHH
Q 038558 302 RSIAERERRTRISRKLKKLQDLVPNMD--KQTSYSDMLDLAVQHIKGLQNQVE 352 (369)
Q Consensus 302 HsiaERrRReRINer~~~Lr~LVP~~~--K~tdKAsILdeAI~YIK~LQ~qVk 352 (369)
|+..||+|+..||+.|..|+.+||... ++.+|..+|..||+||+.|++.++
T Consensus 6 ~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 6 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 688899999999999999999999763 567999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.00 E-value=3.2e-10 Score=108.45 Aligned_cols=53 Identities=17% Similarity=0.368 Sum_probs=42.4
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHHH
Q 038558 299 THPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQV 351 (369)
Q Consensus 299 t~~HsiaERrRReRINer~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~qV 351 (369)
+.+|+++||+||++||+.|.+|+.|||....++||++||+.||+|||.|+...
T Consensus 13 ~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 13 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 35699999999999999999999999955444799999999999999998653
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.85 E-value=8.4e-10 Score=107.03 Aligned_cols=52 Identities=31% Similarity=0.469 Sum_probs=45.9
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhhccCC----CCCCCCHhhHHHHHHHHHHHHHHHH
Q 038558 299 THPRSIAERERRTRISRKLKKLQDLVPN----MDKQTSYSDMLDLAVQHIKGLQNQV 351 (369)
Q Consensus 299 t~~HsiaERrRReRINer~~~Lr~LVP~----~~K~tdKAsILdeAI~YIK~LQ~qV 351 (369)
+.+|+.+||+||+|||+.|.+|+.|||. ..| +||++||..||+|||.|+...
T Consensus 14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k-~dk~~il~~~~~~l~~~~~~~ 69 (387)
T 4f3l_B 14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRGAT 69 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSC-CCHHHHHHHHHHHHHHHHCC-
T ss_pred cccccchhhcchHHHHHHHHHHHHhcCCCCccccc-cCHHHHHHHHHHHHHHhhccc
Confidence 4679999999999999999999999994 445 699999999999999998543
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.74 E-value=1.5e-08 Score=81.97 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhccCCCCC---CCCHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 038558 309 RRTRISRKLKKLQDLVPNMDK---QTSYSDMLDLAVQHIKGLQNQVENLHKDLE 359 (369)
Q Consensus 309 RReRINer~~~Lr~LVP~~~K---~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e 359 (369)
-|..||++|++|..|||.+.. +.+|+.||..||+||+.||++++.+.++..
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999997642 359999999999999999998887775543
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.62 E-value=9.7e-09 Score=80.37 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCC--CCCCCHhhHHHHHHHHHHHHHH
Q 038558 304 IAERERRTRISRKLKKLQDLVPNM--DKQTSYSDMLDLAVQHIKGLQN 349 (369)
Q Consensus 304 iaERrRReRINer~~~Lr~LVP~~--~K~tdKAsILdeAI~YIK~LQ~ 349 (369)
.-||+|+..||+.|..||.+||.. +++++|.++|..||+||+.||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 448999999999999999999976 3567999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.20 E-value=2.8e-06 Score=70.54 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCC--CCCCCHhhHHHHHHHHHHHHHHHHHHHH
Q 038558 306 ERERRTRISRKLKKLQDLVPNM--DKQTSYSDMLDLAVQHIKGLQNQVENLH 355 (369)
Q Consensus 306 ERrRReRINer~~~Lr~LVP~~--~K~tdKAsILdeAI~YIK~LQ~qVk~L~ 355 (369)
||.|=..||+.|..||.+||.. +++++|.++|..||+||+.|++.++.-.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5778889999999999999975 4668999999999999999999876543
No 19
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=54.74 E-value=15 Score=27.36 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCC
Q 038558 304 IAERERRTRISRKLKKLQDLVPNMDK 329 (369)
Q Consensus 304 iaERrRReRINer~~~Lr~LVP~~~K 329 (369)
.++|-+|...++-++.|+.+.|+.++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57899999999999999999999986
No 20
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=48.52 E-value=24 Score=30.87 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhccCCCC---CCCCHhhHHHHHHHHHHHH
Q 038558 312 RISRKLKKLQDLVPNMD---KQTSYSDMLDLAVQHIKGL 347 (369)
Q Consensus 312 RINer~~~Lr~LVP~~~---K~tdKAsILdeAI~YIK~L 347 (369)
-|.-.|..|+++||.-. .++-|..||.+|.++++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 58899999999999543 3468999999999998876
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=48.04 E-value=37 Score=25.19 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 038558 306 ERERRTRISRKLKKLQD 322 (369)
Q Consensus 306 ERrRReRINer~~~Lr~ 322 (369)
||++|.+...++.+.+.
T Consensus 1 Ekr~rrrerNR~AA~rc 17 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC 17 (63)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH
Confidence 45555555666555543
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=37.68 E-value=24 Score=28.25 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 038558 336 MLDLAVQHIKGLQNQVENLHKDLEH 360 (369)
Q Consensus 336 ILdeAI~YIK~LQ~qVk~L~~~~e~ 360 (369)
-++.||+-|.-||..|++|+++...
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999998877654
No 23
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=31.37 E-value=31 Score=25.08 Aligned_cols=20 Identities=10% Similarity=0.307 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 038558 342 QHIKGLQNQVENLHKDLEHC 361 (369)
Q Consensus 342 ~YIK~LQ~qVk~L~~~~e~~ 361 (369)
.||..|+++|+.|+..++..
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888877654
No 24
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=30.80 E-value=25 Score=32.42 Aligned_cols=45 Identities=11% Similarity=0.279 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHHHHHHH
Q 038558 309 RRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLH 355 (369)
Q Consensus 309 RReRINer~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~qVk~L~ 355 (369)
=|.-++.-+..|+.|+-.- ..++-+++.+||+|+|.|-.-+..|+
T Consensus 52 v~~Dl~~F~~QL~qL~~~~--i~~Tre~v~d~l~YLkkLD~l~~~Lq 96 (204)
T 2jqq_A 52 TQSDLQKFMTQLDHLIKDD--ISNTQEIIKDVLEYLKKLDEIYGSLR 96 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHS--CSTTHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777775432 23788999999999999987665554
No 25
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.21 E-value=55 Score=23.95 Aligned_cols=28 Identities=7% Similarity=0.127 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038558 334 SDMLDLAVQHIKGLQNQVENLHKDLEHC 361 (369)
Q Consensus 334 AsILdeAI~YIK~LQ~qVk~L~~~~e~~ 361 (369)
-..|++.++-+..|.++++.|+++++..
T Consensus 26 D~FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 26 NEFLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999888764
No 26
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=29.81 E-value=1.1e+02 Score=24.99 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 038558 309 RRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDL 358 (369)
Q Consensus 309 RReRINer~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~ 358 (369)
.|.++.+.|..|.+.+ .-..+.|=+||.+|+++|+.|++..
T Consensus 46 kr~kFee~fe~l~s~l---------~~f~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 46 RRDKFSEVLDNLKSTF---------NEFDEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHhhHHHhHHHHHHHHHhHHHH
Confidence 3456666666664432 2344578899999999999998764
No 27
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=29.67 E-value=30 Score=25.66 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcccc
Q 038558 341 VQHIKGLQNQVENLHKDLEHCTC 363 (369)
Q Consensus 341 I~YIK~LQ~qVk~L~~~~e~~tc 363 (369)
-.||..|+.+|+.|+..++....
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~~ 79 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVHS 79 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 47999999999999988876543
No 28
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=29.64 E-value=89 Score=22.38 Aligned_cols=40 Identities=5% Similarity=0.123 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHH
Q 038558 310 RTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQ 350 (369)
Q Consensus 310 ReRINer~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~q 350 (369)
++.|.+.+..-...+|...+.++..+ +...|.||+.|..+
T Consensus 48 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 48 VAAVAYQVTNGKNAMPGFNGRLSPLQ-IEDVAAYVVDQAEK 87 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccccCCCHHH-HHHHHHHHHHHhhc
Confidence 34455555544567887765445554 57889999998754
No 29
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=27.24 E-value=39 Score=24.29 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 038558 340 AVQHIKGLQNQVENLHKDL 358 (369)
Q Consensus 340 AI~YIK~LQ~qVk~L~~~~ 358 (369)
--+.|+.|+.++..|+..+
T Consensus 49 L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 49 LQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 30
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=24.76 E-value=1.1e+02 Score=24.81 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=26.0
Q ss_pred CCCCCCCCHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038558 325 PNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEH 360 (369)
Q Consensus 325 P~~~K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e~ 360 (369)
|.......-..-|.++..-|..|+..+.+++.-++.
T Consensus 52 P~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 52 PQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp GGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333355778889999999999999888865544
No 31
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=22.32 E-value=1.5e+02 Score=20.91 Aligned_cols=38 Identities=5% Similarity=0.082 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHH
Q 038558 312 RISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQ 350 (369)
Q Consensus 312 RINer~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~q 350 (369)
.|-+.|+.-+..+|...+.++..+ +...|.||+.|..+
T Consensus 47 ~~~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 84 (86)
T 3ph2_B 47 AITTVVTNGKAGMPAFKGRLTDDQ-IAAVAAYVLDQAEK 84 (86)
T ss_dssp HHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCcccCCCHHH-HHHHHHHHHHhhhc
Confidence 344444444457887755455555 57889999998754
No 32
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.92 E-value=1.5e+02 Score=23.78 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038558 310 RTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHC 361 (369)
Q Consensus 310 ReRINer~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e~~ 361 (369)
|.+-.+.|.+|+.=+ ..-|+.=++-|+.|+.+|..+...+.++
T Consensus 35 rqkekEqL~~LKkkl---------~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 35 RARAKEQLAALKKHK---------ENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888888887533 3445666667777777777766655443
No 33
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=21.79 E-value=1.6e+02 Score=20.76 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=22.8
Q ss_pred HHHHHHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHH
Q 038558 313 ISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQN 349 (369)
Q Consensus 313 INer~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~ 349 (369)
|.+.|+.-...+|.....++..+ +...|.||+.|..
T Consensus 47 l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 82 (85)
T 1gdv_A 47 ITYQVQNGKNAMPAFGGRLVDED-IEDAANYVLSQSE 82 (85)
T ss_dssp HHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCCCCCCCCHHH-HHHHHHHHHHHhh
Confidence 33334333357887665445555 5789999999875
No 34
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.51 E-value=56 Score=25.20 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHh
Q 038558 310 RTRISRKLKKLQ 321 (369)
Q Consensus 310 ReRINer~~~Lr 321 (369)
|+|=...|+.|.
T Consensus 24 ReRK~~~i~~LE 35 (70)
T 1gd2_E 24 RKRKEDHLKALE 35 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344344455543
No 35
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=21.30 E-value=2.7e+02 Score=25.52 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHH-----------HHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038558 306 ERERRTRISRKL-----------KKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEH 360 (369)
Q Consensus 306 ERrRReRINer~-----------~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e~ 360 (369)
+..+|++|-+.- ..|+..-..... .++..+|++|-.+|+.++.++++|.+.+..
T Consensus 29 ~~d~REriik~sRdI~~~Sk~~I~~Lhr~~~~~~~-~~~~~~~~~A~~~l~~~~~~~~~L~~~l~~ 93 (240)
T 1j1j_A 29 EQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGF-QDIPKRCLKAREHFGTVKTHLTSLKTKFPA 93 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS-TTHHHHHHHHHHHHHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 455666665543 334444322223 258899999999999999999999876653
No 36
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=20.38 E-value=2.7e+02 Score=26.29 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=30.1
Q ss_pred HHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038558 317 LKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEH 360 (369)
Q Consensus 317 ~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e~ 360 (369)
|..|+... .. .++..+|++|-.+++.+++.+++|..++..
T Consensus 71 If~LhR~~---~~-~~~~~il~ea~~~L~~i~~~~~~La~~l~~ 110 (290)
T 3qb5_K 71 IFLLHRIT---SA-PDMEDILTESEIKLDGVRQKIFQVAQELSG 110 (290)
T ss_dssp HHHHHTCC---SS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcc---cc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44555543 22 268899999999999999999998877654
Done!