Query 038559
Match_columns 137
No_of_seqs 176 out of 1075
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 12:15:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 98.1 7E-06 1.5E-10 73.1 6.2 86 12-102 630-715 (1153)
2 PLN00113 leucine-rich repeat r 97.9 2E-05 4.3E-10 68.6 5.6 60 42-101 187-246 (968)
3 PLN00113 leucine-rich repeat r 97.9 1.8E-05 3.9E-10 68.9 4.9 89 11-102 494-582 (968)
4 PF14580 LRR_9: Leucine-rich r 97.9 4.4E-06 9.5E-11 59.6 0.6 112 10-134 35-150 (175)
5 PF13855 LRR_8: Leucine rich r 97.8 4.4E-05 9.5E-10 44.7 4.6 36 65-101 23-59 (61)
6 PLN03210 Resistant to P. syrin 97.8 6.6E-05 1.4E-09 67.0 6.6 82 16-102 611-692 (1153)
7 PF13855 LRR_8: Leucine rich r 97.7 8.5E-05 1.8E-09 43.4 4.7 60 16-78 1-60 (61)
8 PRK15386 type III secretion pr 97.0 0.001 2.2E-08 53.5 4.8 83 9-102 64-167 (426)
9 PLN03150 hypothetical protein; 96.8 0.0022 4.8E-08 54.0 5.3 86 12-100 438-524 (623)
10 PLN03150 hypothetical protein; 96.8 0.0021 4.5E-08 54.2 4.5 63 40-102 439-501 (623)
11 PF12799 LRR_4: Leucine Rich r 96.7 0.0027 5.8E-08 34.9 3.5 35 67-102 1-35 (44)
12 PF14580 LRR_9: Leucine-rich r 96.6 0.00064 1.4E-08 48.5 0.6 91 8-101 56-150 (175)
13 KOG3665 ZYG-1-like serine/thre 96.4 0.0012 2.7E-08 56.2 1.0 81 14-100 146-229 (699)
14 KOG0472 Leucine-rich repeat pr 96.1 0.0023 5E-08 51.3 1.1 87 11-102 430-539 (565)
15 KOG4194 Membrane glycoprotein 96.1 0.0011 2.4E-08 55.4 -0.9 59 41-102 363-427 (873)
16 KOG0617 Ras suppressor protein 96.0 0.0003 6.6E-09 50.6 -3.7 86 11-101 74-183 (264)
17 KOG0617 Ras suppressor protein 95.8 0.0015 3.3E-08 47.1 -1.1 57 41-99 54-110 (264)
18 KOG3665 ZYG-1-like serine/thre 95.7 0.0027 5.9E-08 54.2 -0.1 59 41-102 146-206 (699)
19 KOG4658 Apoptotic ATPase [Sign 95.6 0.0039 8.4E-08 54.6 0.6 39 11-52 566-604 (889)
20 KOG4194 Membrane glycoprotein 95.6 0.0051 1.1E-07 51.6 1.1 36 66-102 268-304 (873)
21 KOG0618 Serine/threonine phosp 95.2 0.0038 8.2E-08 54.4 -1.0 50 3-55 370-419 (1081)
22 KOG0444 Cytoskeletal regulator 95.1 0.0018 3.8E-08 54.8 -2.9 34 65-98 289-323 (1255)
23 KOG0444 Cytoskeletal regulator 95.1 0.0016 3.5E-08 55.0 -3.2 85 10-101 144-255 (1255)
24 cd00116 LRR_RI Leucine-rich re 94.8 0.0059 1.3E-07 46.2 -0.6 15 88-102 190-204 (319)
25 KOG1644 U2-associated snRNP A' 94.7 0.087 1.9E-06 38.7 5.2 61 41-101 86-150 (233)
26 PF12799 LRR_4: Leucine Rich r 94.6 0.04 8.8E-07 30.1 2.6 13 41-53 22-34 (44)
27 KOG3864 Uncharacterized conser 94.3 0.0041 8.9E-08 45.4 -2.4 62 41-102 123-187 (221)
28 PF00560 LRR_1: Leucine Rich R 94.3 0.034 7.4E-07 25.7 1.6 21 68-89 1-21 (22)
29 cd00116 LRR_RI Leucine-rich re 93.9 0.013 2.8E-07 44.3 -0.6 37 66-102 192-232 (319)
30 KOG4341 F-box protein containi 93.7 0.024 5.2E-07 45.6 0.6 88 41-135 370-463 (483)
31 PF13504 LRR_7: Leucine rich r 93.2 0.063 1.4E-06 23.3 1.3 17 67-84 1-17 (17)
32 KOG1644 U2-associated snRNP A' 93.1 0.16 3.4E-06 37.4 4.0 86 41-134 62-150 (233)
33 KOG4658 Apoptotic ATPase [Sign 92.6 0.074 1.6E-06 46.8 2.0 73 13-85 767-847 (889)
34 PRK15386 type III secretion pr 92.6 0.13 2.9E-06 41.5 3.3 66 12-88 48-115 (426)
35 KOG3864 Uncharacterized conser 92.5 0.0066 1.4E-07 44.4 -3.8 76 3-79 112-188 (221)
36 KOG0472 Leucine-rich repeat pr 92.3 0.022 4.9E-07 45.9 -1.4 59 41-102 250-308 (565)
37 PRK15370 E3 ubiquitin-protein 92.1 0.24 5.2E-06 42.9 4.5 31 68-101 263-293 (754)
38 PRK15370 E3 ubiquitin-protein 92.1 0.24 5.2E-06 42.9 4.5 75 16-102 199-273 (754)
39 KOG4237 Extracellular matrix p 92.0 0.14 3.1E-06 41.2 2.8 85 11-102 269-357 (498)
40 KOG2120 SCF ubiquitin ligase, 91.9 0.033 7.1E-07 43.4 -0.8 62 41-102 311-374 (419)
41 PRK15387 E3 ubiquitin-protein 91.5 0.25 5.4E-06 43.0 3.9 34 68-102 423-456 (788)
42 PRK15387 E3 ubiquitin-protein 90.3 0.45 9.8E-06 41.5 4.4 18 66-84 301-318 (788)
43 KOG2739 Leucine-rich acidic nu 90.2 0.21 4.5E-06 37.8 2.1 69 8-80 57-129 (260)
44 KOG3207 Beta-tubulin folding c 89.9 0.12 2.5E-06 42.1 0.5 62 41-102 244-312 (505)
45 KOG2739 Leucine-rich acidic nu 88.1 0.12 2.6E-06 39.0 -0.5 62 41-103 63-128 (260)
46 KOG0532 Leucine-rich repeat (L 88.0 0.069 1.5E-06 44.7 -2.0 60 40-102 186-245 (722)
47 KOG1259 Nischarin, modulator o 87.9 0.064 1.4E-06 42.0 -2.1 13 12-24 325-337 (490)
48 COG4886 Leucine-rich repeat (L 85.6 0.4 8.7E-06 37.7 1.2 55 44-100 141-195 (394)
49 KOG3207 Beta-tubulin folding c 85.3 0.49 1.1E-05 38.6 1.5 70 5-75 260-334 (505)
50 KOG1859 Leucine-rich repeat pr 85.0 0.07 1.5E-06 46.1 -3.4 81 11-99 182-262 (1096)
51 KOG2123 Uncharacterized conser 83.8 0.061 1.3E-06 41.6 -3.9 66 7-77 32-98 (388)
52 KOG0531 Protein phosphatase 1, 82.7 0.74 1.6E-05 36.8 1.6 15 88-102 183-197 (414)
53 COG4886 Leucine-rich repeat (L 82.4 0.37 8.1E-06 37.9 -0.2 79 17-101 141-219 (394)
54 KOG0531 Protein phosphatase 1, 82.0 0.38 8.3E-06 38.4 -0.3 82 12-102 91-173 (414)
55 KOG0618 Serine/threonine phosp 80.2 0.36 7.9E-06 42.6 -1.0 60 41-102 66-125 (1081)
56 PF13306 LRR_5: Leucine rich r 78.4 10 0.00022 24.4 5.8 78 12-99 8-89 (129)
57 KOG2120 SCF ubiquitin ligase, 76.8 0.42 9.1E-06 37.4 -1.5 71 5-78 301-374 (419)
58 smart00367 LRR_CC Leucine-rich 74.6 1.9 4E-05 20.4 1.0 15 67-81 2-16 (26)
59 KOG4237 Extracellular matrix p 74.5 0.14 2.9E-06 41.3 -4.8 40 10-52 85-124 (498)
60 smart00369 LRR_TYP Leucine-ric 72.4 2.5 5.5E-05 19.8 1.2 20 66-86 1-20 (26)
61 smart00370 LRR Leucine-rich re 72.4 2.5 5.5E-05 19.8 1.2 20 66-86 1-20 (26)
62 KOG1947 Leucine rich repeat pr 71.6 1.2 2.5E-05 35.4 -0.2 37 66-102 268-306 (482)
63 KOG1259 Nischarin, modulator o 70.0 2.6 5.6E-05 33.3 1.3 13 41-53 327-339 (490)
64 KOG4579 Leucine-rich repeat (L 64.6 0.27 5.9E-06 34.3 -4.4 52 41-94 75-126 (177)
65 KOG0532 Leucine-rich repeat (L 63.4 0.52 1.1E-05 39.8 -3.8 83 11-100 116-198 (722)
66 KOG1859 Leucine-rich repeat pr 55.9 0.56 1.2E-05 40.8 -4.8 86 9-102 202-290 (1096)
67 KOG1909 Ran GTPase-activating 55.6 1.9 4.2E-05 34.2 -1.7 61 41-102 239-309 (382)
68 PF13516 LRR_6: Leucine Rich r 48.3 13 0.00028 16.8 1.2 11 67-77 2-12 (24)
69 KOG4341 F-box protein containi 42.5 9.8 0.00021 31.1 0.4 93 9-102 312-412 (483)
70 smart00446 LRRcap occurring C- 37.5 10 0.00022 18.4 -0.1 14 11-24 8-21 (26)
71 KOG2982 Uncharacterized conser 35.0 22 0.00047 28.2 1.3 57 41-97 222-285 (418)
72 KOG2982 Uncharacterized conser 33.4 40 0.00088 26.7 2.5 15 10-24 91-105 (418)
73 COG1911 RPL30 Ribosomal protei 27.4 40 0.00086 21.8 1.3 30 98-132 42-71 (100)
74 smart00364 LRR_BAC Leucine-ric 22.9 52 0.0011 15.9 0.9 17 68-85 3-19 (26)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.08 E-value=7e-06 Score=73.10 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=58.6
Q ss_pred ccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCC
Q 038559 12 IQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVA 91 (137)
Q Consensus 12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~ 91 (137)
.+.+++|+.|.|.++..+..++ ....+++|+.|.+.++.....+....+.+++|+.|.+.+|.+++.+|.++ +++
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIP----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCC----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 3467777777776555455442 12356788888887754333222333668888888888888888888876 688
Q ss_pred CCCEEEEcCCC
Q 038559 92 TLKQLQILPLL 102 (137)
Q Consensus 92 sL~~L~i~~~~ 102 (137)
+|+.|.+++|.
T Consensus 705 sL~~L~Lsgc~ 715 (1153)
T PLN03210 705 SLYRLNLSGCS 715 (1153)
T ss_pred CCCEEeCCCCC
Confidence 88888888875
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.90 E-value=2e-05 Score=68.63 Aligned_cols=60 Identities=22% Similarity=0.190 Sum_probs=28.0
Q ss_pred cccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559 42 FHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL 101 (137)
Q Consensus 42 f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~ 101 (137)
+++|++|++.++.+...+...-+.|++|+.|.+.++.-...+|..+.++++|++|++.+|
T Consensus 187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 445555555443222111111234555555555554433345555555566666655544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.87 E-value=1.8e-05 Score=68.89 Aligned_cols=89 Identities=19% Similarity=0.134 Sum_probs=63.5
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV 90 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l 90 (137)
.++.+++|++|+|.++.-...++ ...+.+++|+.|++.++.+...+...-+.|++|+.|.+.+|.-...+|..+.++
T Consensus 494 ~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 570 (968)
T PLN00113 494 KLGSLSELMQLKLSENKLSGEIP---DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV 570 (968)
T ss_pred hhhhhhccCEEECcCCcceeeCC---hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC
Confidence 45677777877777553222231 112367889999998865554433333678999999999887667889999999
Q ss_pred CCCCEEEEcCCC
Q 038559 91 ATLKQLQILPLL 102 (137)
Q Consensus 91 ~sL~~L~i~~~~ 102 (137)
++|+.|++++|+
T Consensus 571 ~~L~~l~ls~N~ 582 (968)
T PLN00113 571 ESLVQVNISHNH 582 (968)
T ss_pred cccCEEeccCCc
Confidence 999999998876
No 4
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.85 E-value=4.4e-06 Score=59.60 Aligned_cols=112 Identities=21% Similarity=0.171 Sum_probs=44.2
Q ss_pred cccc-CCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccc--cc
Q 038559 10 LVIQ-LLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLL--ED 86 (137)
Q Consensus 10 ~~L~-~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp--~g 86 (137)
+.|+ .|.+|+.|+|+++. +..+ -+...+++|++|.+.+.........-..++|+|+.|.+.+- ++..+- ..
T Consensus 35 e~L~~~l~~L~~L~Ls~N~-I~~l----~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~ 108 (175)
T PF14580_consen 35 ENLGATLDKLEVLDLSNNQ-ITKL----EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEP 108 (175)
T ss_dssp -S--TT-TT--EEE-TTS---S------TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGG
T ss_pred cchhhhhcCCCEEECCCCC-Cccc----cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHH
Confidence 4566 57889999998654 4444 22336889999999985443221000135899999999653 333332 34
Q ss_pred ccCCCCCCEEEEcCCCHHHHHhhCCCCCcCc-ceeeccceeeecccccc
Q 038559 87 LQFVATLKQLQILPLLDEHKERLKPYGGEEN-YKIRHIPQTPGRGYSRV 134 (137)
Q Consensus 87 l~~l~sL~~L~i~~~~~~l~~~~~~~~~~~~-~~i~hi~~i~~~~~~~~ 134 (137)
+..+++|+.|++.++|- + .. ..++ ..+.++|.+..-+..++
T Consensus 109 L~~l~~L~~L~L~~NPv-----~-~~-~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPV-----C-EK-KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp GGG-TT--EEE-TT-GG-----G-GS-TTHHHHHHHH-TT-SEETTEET
T ss_pred HHcCCCcceeeccCCcc-----c-ch-hhHHHHHHHHcChhheeCCEEc
Confidence 66789999999999982 1 11 1222 44567887776555443
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.83 E-value=4.4e-05 Score=44.70 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=18.6
Q ss_pred cCCccceEeeccCcccccccc-cccCCCCCCEEEEcCC
Q 038559 65 ALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPL 101 (137)
Q Consensus 65 ~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~ 101 (137)
.|++|+.|.+.++ +++.+|. .+.++++|++|+++++
T Consensus 23 ~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 23 NLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555555533 3444443 3455556666665554
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.76 E-value=6.6e-05 Score=67.01 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=57.5
Q ss_pred CccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCE
Q 038559 16 PNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQ 95 (137)
Q Consensus 16 p~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~ 95 (137)
.+|+.|.+.++. ++.+ ..+...+++|+.|++.+......+ ...+.+++|+.|.+.+|..+..+|..+.++++|+.
T Consensus 611 ~~L~~L~L~~s~-l~~L---~~~~~~l~~Lk~L~Ls~~~~l~~i-p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 611 ENLVKLQMQGSK-LEKL---WDGVHSLTGLRNIDLRGSKNLKEI-PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred cCCcEEECcCcc-cccc---ccccccCCCCCEEECCCCCCcCcC-CccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 345555554332 3333 122236788888888874333222 22356899999999999999999999999999999
Q ss_pred EEEcCCC
Q 038559 96 LQILPLL 102 (137)
Q Consensus 96 L~i~~~~ 102 (137)
|.+++|.
T Consensus 686 L~L~~c~ 692 (1153)
T PLN03210 686 LDMSRCE 692 (1153)
T ss_pred EeCCCCC
Confidence 9999986
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.72 E-value=8.5e-05 Score=43.44 Aligned_cols=60 Identities=28% Similarity=0.342 Sum_probs=42.7
Q ss_pred CccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCc
Q 038559 16 PNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCL 78 (137)
Q Consensus 16 p~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~ 78 (137)
|+|++|.|.++ .+..++.+.+. ++++|++|++.+..+.....-.-..||+|+.|.+.++.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~--~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFS--NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTT--TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHc--CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 78999999876 47777443443 78999999999866543211112569999999998764
No 8
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.05 E-value=0.001 Score=53.47 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=42.0
Q ss_pred cccccCCC-ccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeecc--Ccccccccc
Q 038559 9 ALVIQLLP-NLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHK--CLKLRMLLE 85 (137)
Q Consensus 9 l~~L~~Lp-~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~--c~~l~~lp~ 85 (137)
+..|..+| +|+.|.|.+|..+..++ ..-.++|+.|.+.++..... --++|+.|.+.. |..+..+|.
T Consensus 64 L~sLP~LP~sLtsL~Lsnc~nLtsLP-----~~LP~nLe~L~Ls~Cs~L~s------LP~sLe~L~L~~n~~~~L~~LPs 132 (426)
T PRK15386 64 IESLPVLPNELTEITIENCNNLTTLP-----GSIPEGLEKLTVCHCPEISG------LPESVRSLEIKGSATDSIKNVPN 132 (426)
T ss_pred CcccCCCCCCCcEEEccCCCCcccCC-----chhhhhhhheEccCcccccc------cccccceEEeCCCCCcccccCcc
Confidence 33444444 36666666555544331 11123566666665422211 123455555532 334566666
Q ss_pred cccCC------------------CCCCEEEEcCCC
Q 038559 86 DLQFV------------------ATLKQLQILPLL 102 (137)
Q Consensus 86 gl~~l------------------~sL~~L~i~~~~ 102 (137)
++..| ++|+.|.+.+|.
T Consensus 133 sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 133 GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS 167 (426)
T ss_pred hHhheeccccccccccccccccCCcccEEEecCCC
Confidence 55444 377888887776
No 9
>PLN03150 hypothetical protein; Provisional
Probab=96.82 E-value=0.0022 Score=53.98 Aligned_cols=86 Identities=20% Similarity=0.175 Sum_probs=41.8
Q ss_pred ccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC-
Q 038559 12 IQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV- 90 (137)
Q Consensus 12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l- 90 (137)
+++|++|+.|.|.++.-...++ ...+.+++|+.|++.++.+...+....+.|++|+.|.+.++.-...+|..+..+
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP---~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~ 514 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIP---PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCC---hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcc
Confidence 4566666666665432111221 112356666666666644433222223556666666666554334555544332
Q ss_pred CCCCEEEEcC
Q 038559 91 ATLKQLQILP 100 (137)
Q Consensus 91 ~sL~~L~i~~ 100 (137)
.++..+.+.+
T Consensus 515 ~~~~~l~~~~ 524 (623)
T PLN03150 515 LHRASFNFTD 524 (623)
T ss_pred ccCceEEecC
Confidence 2334444443
No 10
>PLN03150 hypothetical protein; Provisional
Probab=96.75 E-value=0.0021 Score=54.20 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=50.0
Q ss_pred cCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 40 GGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 40 ~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
..+++|+.|++.+..+...+....+.|++|+.|.+.++.-...+|..+.++++|+.|+++++.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 368999999999865544433345789999999998875445789999999999999998764
No 11
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.73 E-value=0.0027 Score=34.92 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=22.8
Q ss_pred CccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 67 PSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 67 p~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
|+|+.|.+.++ +++.+|..+.++++|+.|++++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC
Confidence 46777777665 466676667777777777777765
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.63 E-value=0.00064 Score=48.51 Aligned_cols=91 Identities=21% Similarity=0.163 Sum_probs=37.0
Q ss_pred ccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeee-cCCcCCccceEeeccCccccc---c
Q 038559 8 SALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEI-EEGALPSLKYLQLHKCLKLRM---L 83 (137)
Q Consensus 8 ~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~-~~g~mp~L~~L~i~~c~~l~~---l 83 (137)
.++.+..|++|+.|.+.+.. +..+++ .+ ...||+|++|.+.+....++-.+ ....+|+|+.|.+.+.|-.+. -
T Consensus 56 ~l~~l~~L~~L~~L~L~~N~-I~~i~~-~l-~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR 132 (175)
T PF14580_consen 56 KLEGLPGLPRLKTLDLSNNR-ISSISE-GL-DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYR 132 (175)
T ss_dssp --TT----TT--EEE--SS----S-CH-HH-HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHH
T ss_pred cccCccChhhhhhcccCCCC-CCcccc-ch-HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHH
Confidence 34567788999999997543 444411 01 12589999999998554433222 225799999999987763321 1
Q ss_pred cccccCCCCCCEEEEcCC
Q 038559 84 LEDLQFVATLKQLQILPL 101 (137)
Q Consensus 84 p~gl~~l~sL~~L~i~~~ 101 (137)
..-+.++++|+.|+-...
T Consensus 133 ~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 133 LFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHHHH-TT-SEETTEET
T ss_pred HHHHHHcChhheeCCEEc
Confidence 123567888888865433
No 13
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.40 E-value=0.0012 Score=56.24 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=42.1
Q ss_pred CCCccceeeecccc-cceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccc--ccccCC
Q 038559 14 LLPNLKTLTLWLAS-KAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLL--EDLQFV 90 (137)
Q Consensus 14 ~Lp~L~~L~L~~~~-~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp--~gl~~l 90 (137)
.||+|+.|.+.+.. ..+.+ .--...||+|..|+|++.+.... ...+.+++|+.|.+.+.+ ++.-+ ..+-+|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF---~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDF---SQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLE-FESYQDLIDLFNL 219 (699)
T ss_pred hCcccceEEecCceecchhH---HHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCC-CCchhhHHHHhcc
Confidence 58888888886421 11111 11123788888888887543322 233556666666665432 11111 133445
Q ss_pred CCCCEEEEcC
Q 038559 91 ATLKQLQILP 100 (137)
Q Consensus 91 ~sL~~L~i~~ 100 (137)
++|+.|+|+.
T Consensus 220 ~~L~vLDIS~ 229 (699)
T KOG3665|consen 220 KKLRVLDISR 229 (699)
T ss_pred cCCCeeeccc
Confidence 6666666543
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.11 E-value=0.0023 Score=51.34 Aligned_cols=87 Identities=21% Similarity=0.248 Sum_probs=58.4
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEecccc---ccceee-----------------ec---CCcCC
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHV---LEEWTE-----------------IE---EGALP 67 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~---~~~~~~-----------------~~---~g~mp 67 (137)
.+..+++|..|+|.+.. +-.+|. ..+++-.|+.|+++... +.+++. +. .+.|.
T Consensus 430 ~l~~l~kLt~L~L~NN~-Ln~LP~---e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNL-LNDLPE---EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMR 505 (565)
T ss_pred HHHhhhcceeeecccch-hhhcch---hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence 46789999999998654 444432 22345557777666521 111100 01 24688
Q ss_pred ccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 68 SLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 68 ~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
+|..|.+.+ ..+..+|.++.++++|++|.+++.|
T Consensus 506 nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 506 NLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 888888865 3588999999999999999999987
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.06 E-value=0.0011 Score=55.36 Aligned_cols=59 Identities=25% Similarity=0.371 Sum_probs=41.5
Q ss_pred CcccccEEEeccccccceeeecCC-----cCCccceEeeccCcccccccc-cccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEG-----ALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g-----~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~~ 102 (137)
++.+|++|++.+.. ..| .++.+ .||+|++|.+.+ .+++.+|. .+..+.+|++|++.+.+
T Consensus 363 ~lssL~~LdLr~N~-ls~-~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNE-LSW-CIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred HhhhhhhhcCcCCe-EEE-EEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence 45778888887643 344 34432 389999998865 56888885 66778888888886655
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.03 E-value=0.0003 Score=50.60 Aligned_cols=86 Identities=27% Similarity=0.377 Sum_probs=53.2
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEecccccccee------------------------eecCCcC
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWT------------------------EIEEGAL 66 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~------------------------~~~~g~m 66 (137)
.++.||.|++|.+. +..+..+ .-+.|+||.|+.|++.+.++.+.. ..+.|.+
T Consensus 74 ~issl~klr~lnvg-mnrl~~l---prgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~l 149 (264)
T KOG0617|consen 74 SISSLPKLRILNVG-MNRLNIL---PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKL 149 (264)
T ss_pred hhhhchhhhheecc-hhhhhcC---ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhh
Confidence 57789999999885 2223333 234568999999988875443221 1122445
Q ss_pred CccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559 67 PSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL 101 (137)
Q Consensus 67 p~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~ 101 (137)
.+|+.|.+..- ++-++|..+..++.|++|.|.+.
T Consensus 150 t~lqil~lrdn-dll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 150 TNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred cceeEEeeccC-chhhCcHHHHHHHHHHHHhcccc
Confidence 55555555432 46667777777788887777654
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.78 E-value=0.0015 Score=47.06 Aligned_cols=57 Identities=23% Similarity=0.364 Sum_probs=25.8
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEc
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQIL 99 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~ 99 (137)
.+.+|+.|.+.+....+. .....+||+|+.|.+. ...+..+|.|+..++.|+.|++.
T Consensus 54 ~l~nlevln~~nnqie~l-p~~issl~klr~lnvg-mnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVG-MNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred Hhhhhhhhhcccchhhhc-Chhhhhchhhhheecc-hhhhhcCccccCCCchhhhhhcc
Confidence 344555555554332222 2333445555555443 22344455555555555554443
No 18
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.68 E-value=0.0027 Score=54.16 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=43.2
Q ss_pred CcccccEEEeccccccceeeec--CCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIE--EGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~--~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
.||+|++|.+.+..+..- .|. -.++|+|..|+|.++. +..+ .|+.++.+|+.|.+.+..
T Consensus 146 ~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrnLe 206 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRNLE 206 (699)
T ss_pred hCcccceEEecCceecch-hHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHHhccCCC
Confidence 589999999998432211 122 2589999999998763 5555 789999999988887665
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.62 E-value=0.0039 Score=54.60 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=25.9
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEecc
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAF 52 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~ 52 (137)
.+..||.|+.|+|+++..+.++|. ..+.+=+|+.|++++
T Consensus 566 ff~~m~~LrVLDLs~~~~l~~LP~---~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLSKLPS---SIGELVHLRYLDLSD 604 (889)
T ss_pred HHhhCcceEEEECCCCCccCcCCh---HHhhhhhhhcccccC
Confidence 367788899999987777777632 223455666666655
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.59 E-value=0.0051 Score=51.57 Aligned_cols=36 Identities=25% Similarity=0.211 Sum_probs=20.6
Q ss_pred CCccceEeeccCcccccccc-cccCCCCCCEEEEcCCC
Q 038559 66 LPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPLL 102 (137)
Q Consensus 66 mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~~ 102 (137)
|.++++|.+.. .++.++-. ++-.+++|+.|+++...
T Consensus 268 l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 268 LEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred ecccceeeccc-chhhhhhcccccccchhhhhccchhh
Confidence 44445554432 22344433 56678888888887754
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.16 E-value=0.0038 Score=54.35 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=32.7
Q ss_pred CCCCCccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccc
Q 038559 3 HLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVL 55 (137)
Q Consensus 3 ~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~ 55 (137)
+|..+-+++|-.+++|+.|+|.+.+ +..+|... ...|+.|+.|++++..+
T Consensus 370 ~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~--~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 370 HLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASK--LRKLEELEELNLSGNKL 419 (1081)
T ss_pred cccccchhhhccccceeeeeecccc-cccCCHHH--HhchHHhHHHhcccchh
Confidence 5677788999999999999997543 33332111 12466677777777543
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.15 E-value=0.0018 Score=54.82 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=18.2
Q ss_pred cCCccceEeeccCc-ccccccccccCCCCCCEEEE
Q 038559 65 ALPSLKYLQLHKCL-KLRMLLEDLQFVATLKQLQI 98 (137)
Q Consensus 65 ~mp~L~~L~i~~c~-~l~~lp~gl~~l~sL~~L~i 98 (137)
.+++|++|...+-. ..+.+|.||..+..|+.+..
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence 35566666554322 34566666666666654443
No 23
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.09 E-value=0.0016 Score=55.03 Aligned_cols=85 Identities=19% Similarity=0.156 Sum_probs=46.6
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecC---CcCCccceEeecc----------
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEE---GALPSLKYLQLHK---------- 76 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~---g~mp~L~~L~i~~---------- 76 (137)
+.+.+|+.|.+|+|++.. ++.+ ......+..|++|.+++.++. .|.. .+|.+|+.|.+.+
T Consensus 144 ~lfinLtDLLfLDLS~Nr-Le~L---PPQ~RRL~~LqtL~Ls~NPL~---hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 144 SLFINLTDLLFLDLSNNR-LEML---PPQIRRLSMLQTLKLSNNPLN---HFQLRQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred hHHHhhHhHhhhccccch-hhhc---CHHHHHHhhhhhhhcCCChhh---HHHHhcCccchhhhhhhcccccchhhcCCC
Confidence 445677777788777443 5555 233445667777777764332 1211 3444555554443
Q ss_pred --------------CcccccccccccCCCCCCEEEEcCC
Q 038559 77 --------------CLKLRMLLEDLQFVATLKQLQILPL 101 (137)
Q Consensus 77 --------------c~~l~~lp~gl~~l~sL~~L~i~~~ 101 (137)
|.+|..+|+.+..+.+|+.|.+++.
T Consensus 217 sld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred chhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC
Confidence 3344445555555666666666554
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=94.83 E-value=0.0059 Score=46.19 Aligned_cols=15 Identities=13% Similarity=-0.040 Sum_probs=7.9
Q ss_pred cCCCCCCEEEEcCCC
Q 038559 88 QFVATLKQLQILPLL 102 (137)
Q Consensus 88 ~~l~sL~~L~i~~~~ 102 (137)
...++|++|.+++|.
T Consensus 190 ~~~~~L~~L~L~~n~ 204 (319)
T cd00116 190 KANCNLEVLDLNNNG 204 (319)
T ss_pred HhCCCCCEEeccCCc
Confidence 334456666665553
No 25
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.72 E-value=0.087 Score=38.75 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=27.1
Q ss_pred CcccccEEEeccccccceeeec-CCcCCccceEeeccCccccc---ccccccCCCCCCEEEEcCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRM---LLEDLQFVATLKQLQILPL 101 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~---lp~gl~~l~sL~~L~i~~~ 101 (137)
.+|+|+.|.+.+..+.+.-..+ ..++|+|+.|.+.+-|--.. =-.-+..+++|+.|+....
T Consensus 86 ~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 86 FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 4566666666654332221111 13566666666544331100 0012344556666665443
No 26
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.63 E-value=0.04 Score=30.13 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=6.8
Q ss_pred CcccccEEEeccc
Q 038559 41 GFHKLEILIIAFH 53 (137)
Q Consensus 41 ~f~~Lk~L~l~~~ 53 (137)
.+++|+.|++.+.
T Consensus 22 ~l~~L~~L~l~~N 34 (44)
T PF12799_consen 22 NLPNLETLNLSNN 34 (44)
T ss_dssp TCTTSSEEEETSS
T ss_pred CCCCCCEEEecCC
Confidence 4555555555543
No 27
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=0.0041 Score=45.43 Aligned_cols=62 Identities=24% Similarity=0.311 Sum_probs=43.8
Q ss_pred CcccccEEEecccccc-ce-eeecCCcCCccceEeeccCccccccc-ccccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLE-EW-TEIEEGALPSLKYLQLHKCLKLRMLL-EDLQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~-~~-~~~~~g~mp~L~~L~i~~c~~l~~lp-~gl~~l~sL~~L~i~~~~ 102 (137)
.+++++.|.+.++... .| +..-.+-.|+|+.|.|..|+..++-- .++.++++|+.|.|++.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 5677777788775432 12 11113478999999999999886532 356778999999998887
No 28
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.31 E-value=0.034 Score=25.74 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=15.7
Q ss_pred ccceEeeccCcccccccccccC
Q 038559 68 SLKYLQLHKCLKLRMLLEDLQF 89 (137)
Q Consensus 68 ~L~~L~i~~c~~l~~lp~gl~~ 89 (137)
+|+.|.+.+| +++.+|.++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4788888888 67788877654
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=93.86 E-value=0.013 Score=44.32 Aligned_cols=37 Identities=22% Similarity=0.090 Sum_probs=22.5
Q ss_pred CCccceEeeccCcc----cccccccccCCCCCCEEEEcCCC
Q 038559 66 LPSLKYLQLHKCLK----LRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 66 mp~L~~L~i~~c~~----l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
+++|+.|.+.+|.- ...++..+.++++|++|.+++|+
T Consensus 192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 34677777766641 12234445566778888887765
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.69 E-value=0.024 Score=45.62 Aligned_cols=88 Identities=22% Similarity=0.340 Sum_probs=55.1
Q ss_pred CcccccEEEecccccc--c-eeeecC--CcCCccceEeeccCccc-ccccccccCCCCCCEEEEcCCCHHHHHhhCCCCC
Q 038559 41 GFHKLEILIIAFHVLE--E-WTEIEE--GALPSLKYLQLHKCLKL-RMLLEDLQFVATLKQLQILPLLDEHKERLKPYGG 114 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~--~-~~~~~~--g~mp~L~~L~i~~c~~l-~~lp~gl~~l~sL~~L~i~~~~~~l~~~~~~~~~ 114 (137)
..|.|+.|.+..+.+- + ...++. .++..|+.+.+.+||.+ +..-+.+.+..+|+.+++.+|+.-.++-+.+
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~--- 446 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR--- 446 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH---
Confidence 4677777777654221 0 001122 46888999999999876 3344556677799999999998544433332
Q ss_pred cCcceeeccceeeeccccccc
Q 038559 115 EENYKIRHIPQTPGRGYSRVD 135 (137)
Q Consensus 115 ~~~~~i~hi~~i~~~~~~~~~ 135 (137)
..+|.|++.+..|+-.+
T Consensus 447 ----~~~~lp~i~v~a~~a~~ 463 (483)
T KOG4341|consen 447 ----FATHLPNIKVHAYFAPV 463 (483)
T ss_pred ----HHhhCccceehhhccCC
Confidence 24577887777665443
No 31
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.20 E-value=0.063 Score=23.33 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=6.8
Q ss_pred CccceEeeccCccccccc
Q 038559 67 PSLKYLQLHKCLKLRMLL 84 (137)
Q Consensus 67 p~L~~L~i~~c~~l~~lp 84 (137)
|+|+.|.+.+|. ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 345555555554 44443
No 32
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.11 E-value=0.16 Score=37.41 Aligned_cols=86 Identities=22% Similarity=0.336 Sum_probs=51.3
Q ss_pred CcccccEEEeccccccceeeec-CCcCCccceEeeccCccccccc--ccccCCCCCCEEEEcCCCHHHHHhhCCCCCcCc
Q 038559 41 GFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRMLL--EDLQFVATLKQLQILPLLDEHKERLKPYGGEEN 117 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~lp--~gl~~l~sL~~L~i~~~~~~l~~~~~~~~~~~~ 117 (137)
.++.|.+|.+.+....+. ... ...+|+|+.|.+.+- .+..+- ..+..++.|++|.+.+.|.+-++.++.
T Consensus 62 ~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~------ 133 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRL------ 133 (233)
T ss_pred CccccceEEecCCcceee-ccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecCCchhcccCcee------
Confidence 678888998887544322 111 136899999998752 233322 245678899999999988544444432
Q ss_pred ceeeccceeeecccccc
Q 038559 118 YKIRHIPQTPGRGYSRV 134 (137)
Q Consensus 118 ~~i~hi~~i~~~~~~~~ 134 (137)
+.+-.+|.+...+.+++
T Consensus 134 yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 134 YVLYKLPSLRTLDFQKV 150 (233)
T ss_pred EEEEecCcceEeehhhh
Confidence 23334555554444443
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.60 E-value=0.074 Score=46.80 Aligned_cols=73 Identities=21% Similarity=0.139 Sum_probs=40.2
Q ss_pred cCCCccceeeecccccceeccce----e-cC--ccCcccccEE-EeccccccceeeecCCcCCccceEeeccCccccccc
Q 038559 13 QLLPNLKTLTLWLASKAKQLEKE----F-CS--VGGFHKLEIL-IIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLL 84 (137)
Q Consensus 13 ~~Lp~L~~L~L~~~~~~~~l~~~----~-~~--~~~f~~Lk~L-~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp 84 (137)
.-.|+|+.|.+..|...+.+.+. . .. .-.|+++..+ .+.+......+....-.+++|+.+.+..||++..+|
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P 846 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLP 846 (889)
T ss_pred hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCc
Confidence 35689999999876644433100 0 00 1145555555 344433333333444456677777777787777766
Q ss_pred c
Q 038559 85 E 85 (137)
Q Consensus 85 ~ 85 (137)
.
T Consensus 847 ~ 847 (889)
T KOG4658|consen 847 L 847 (889)
T ss_pred c
Confidence 4
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.60 E-value=0.13 Score=41.49 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=46.7
Q ss_pred ccCCCccceeeecccccceeccceecCccCcc-cccEEEeccccccceeeecCCcC-CccceEeeccCccccccccccc
Q 038559 12 IQLLPNLKTLTLWLASKAKQLEKEFCSVGGFH-KLEILIIAFHVLEEWTEIEEGAL-PSLKYLQLHKCLKLRMLLEDLQ 88 (137)
Q Consensus 12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~-~Lk~L~l~~~~~~~~~~~~~g~m-p~L~~L~i~~c~~l~~lp~gl~ 88 (137)
+..+++|..|.|.+| .+..+| .+| +|++|.+.++..+..+ .+.+ ++|+.|.+.+|.++..+|.++.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP-------~LP~sLtsL~Lsnc~nLtsL---P~~LP~nLe~L~Ls~Cs~L~sLP~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP-------VLPNELTEITIENCNNLTTL---PGSIPEGLEKLTVCHCPEISGLPESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC-------CCCCCCcEEEccCCCCcccC---CchhhhhhhheEccCcccccccccccc
Confidence 445688999999877 466652 355 6999999885443221 1233 4899999999988888887543
No 35
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.51 E-value=0.0066 Score=44.39 Aligned_cols=76 Identities=16% Similarity=-0.077 Sum_probs=47.3
Q ss_pred CCCCCccccccCCCccceeeecccccceeccceecCccCcccccEEEecccccc-ceeeecCCcCCccceEeeccCcc
Q 038559 3 HLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLE-EWTEIEEGALPSLKYLQLHKCLK 79 (137)
Q Consensus 3 ~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~-~~~~~~~g~mp~L~~L~i~~c~~ 79 (137)
.+..+-++.|..++.++.|.+.+|.......-+.. .+.+|+|+.|+|++|..- +.=-.....+++|+.|.|.+.+.
T Consensus 112 ~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 112 SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred hHHHHHHHHHhccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 34445567788999999999987764433211111 237899999999976421 00000014688888888876553
No 36
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.25 E-value=0.022 Score=45.87 Aligned_cols=59 Identities=25% Similarity=0.136 Sum_probs=37.4
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
.+++|..|++.+.++.+. ..+..-+.+|++|++.+- .+.++|..+.++ .|+.|.+.|.|
T Consensus 250 ~L~~l~vLDLRdNklke~-Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLKEV-PDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccccceeeeccccccccC-chHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence 456666666666544433 233344666777777542 366777777777 77888888877
No 37
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=92.08 E-value=0.24 Score=42.94 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=17.4
Q ss_pred ccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559 68 SLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL 101 (137)
Q Consensus 68 ~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~ 101 (137)
+|+.|.+. |.++..+|..+ ..+|+.|.++++
T Consensus 263 ~L~~L~Ls-~N~L~~LP~~l--~~sL~~L~Ls~N 293 (754)
T PRK15370 263 ALQSLDLF-HNKISCLPENL--PEELRYLSVYDN 293 (754)
T ss_pred CCCEEECc-CCccCcccccc--CCCCcEEECCCC
Confidence 56666654 33455566544 246666666654
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=92.07 E-value=0.24 Score=42.94 Aligned_cols=75 Identities=19% Similarity=0.140 Sum_probs=50.8
Q ss_pred CccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCE
Q 038559 16 PNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQ 95 (137)
Q Consensus 16 p~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~ 95 (137)
++|+.|.|.+. .+..++ ...+++|+.|++.++.+.. +..+..++|+.|.+.+|. +..+|..+ .++|+.
T Consensus 199 ~~L~~L~Ls~N-~LtsLP-----~~l~~nL~~L~Ls~N~Lts---LP~~l~~~L~~L~Ls~N~-L~~LP~~l--~s~L~~ 266 (754)
T PRK15370 199 EQITTLILDNN-ELKSLP-----ENLQGNIKTLYANSNQLTS---IPATLPDTIQEMELSINR-ITELPERL--PSALQS 266 (754)
T ss_pred cCCcEEEecCC-CCCcCC-----hhhccCCCEEECCCCcccc---CChhhhccccEEECcCCc-cCcCChhH--hCCCCE
Confidence 36888888754 355552 2345789999998865432 223344689999998774 67888776 358999
Q ss_pred EEEcCCC
Q 038559 96 LQILPLL 102 (137)
Q Consensus 96 L~i~~~~ 102 (137)
|+++++.
T Consensus 267 L~Ls~N~ 273 (754)
T PRK15370 267 LDLFHNK 273 (754)
T ss_pred EECcCCc
Confidence 9987653
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=91.98 E-value=0.14 Score=41.18 Aligned_cols=85 Identities=26% Similarity=0.321 Sum_probs=53.3
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCc---CCccceEeeccCcccc-ccccc
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGA---LPSLKYLQLHKCLKLR-MLLED 86 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~---mp~L~~L~i~~c~~l~-~lp~g 86 (137)
.+.+||+|+.|.|.+.. +..+....| ++...+++|.+....+. .++.++ +..|+.|.+.+- +++ -.|..
T Consensus 269 cf~~L~~L~~lnlsnN~-i~~i~~~aF--e~~a~l~eL~L~~N~l~---~v~~~~f~~ls~L~tL~L~~N-~it~~~~~a 341 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNK-ITRIEDGAF--EGAAELQELYLTRNKLE---FVSSGMFQGLSGLKTLSLYDN-QITTVAPGA 341 (498)
T ss_pred HHhhcccceEeccCCCc-cchhhhhhh--cchhhhhhhhcCcchHH---HHHHHhhhccccceeeeecCC-eeEEEeccc
Confidence 47899999999998543 443311112 24567888888775443 344444 445666665432 343 35677
Q ss_pred ccCCCCCCEEEEcCCC
Q 038559 87 LQFVATLKQLQILPLL 102 (137)
Q Consensus 87 l~~l~sL~~L~i~~~~ 102 (137)
++.+.+|.+|.+...|
T Consensus 342 F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNP 357 (498)
T ss_pred ccccceeeeeehccCc
Confidence 8889999999886554
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=0.033 Score=43.41 Aligned_cols=62 Identities=19% Similarity=0.151 Sum_probs=30.6
Q ss_pred CcccccEEEeccccccceeee-cCCcCCccceEeeccCcccc-cccccccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEI-EEGALPSLKYLQLHKCLKLR-MLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~-~~g~mp~L~~L~i~~c~~l~-~lp~gl~~l~sL~~L~i~~~~ 102 (137)
..|+|..|+++++....--.+ +--.++.|++|.+..|..+. ..-..+...++|.+|++.+|-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 456666666665322211011 11246666666666665431 111134455666666666665
No 41
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=91.46 E-value=0.25 Score=43.05 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=25.2
Q ss_pred ccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 68 SLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 68 ~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
+|+.|.+.+. +++.+|..+.++++|+.|++++++
T Consensus 423 ~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 4555555432 467788888889999999998886
No 42
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=90.27 E-value=0.45 Score=41.48 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=9.2
Q ss_pred CCccceEeeccCccccccc
Q 038559 66 LPSLKYLQLHKCLKLRMLL 84 (137)
Q Consensus 66 mp~L~~L~i~~c~~l~~lp 84 (137)
+|+|+.|.+.++ ++..+|
T Consensus 301 p~~L~~LdLS~N-~L~~Lp 318 (788)
T PRK15387 301 PPGLQELSVSDN-QLASLP 318 (788)
T ss_pred ccccceeECCCC-ccccCC
Confidence 355666666554 344443
No 43
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.22 E-value=0.21 Score=37.77 Aligned_cols=69 Identities=22% Similarity=0.162 Sum_probs=37.2
Q ss_pred ccccccCCCccceeeecccccc--eeccceecCccCcccccEEEecccccc--ceeeecCCcCCccceEeeccCccc
Q 038559 8 SALVIQLLPNLKTLTLWLASKA--KQLEKEFCSVGGFHKLEILIIAFHVLE--EWTEIEEGALPSLKYLQLHKCLKL 80 (137)
Q Consensus 8 ~l~~L~~Lp~L~~L~L~~~~~~--~~l~~~~~~~~~f~~Lk~L~l~~~~~~--~~~~~~~g~mp~L~~L~i~~c~~l 80 (137)
.+..+.+||+|++|.++..+.. ..+ .+.+...|+|+.|.+++...- +.+ -....+++|..|.+.+|+-.
T Consensus 57 t~~~~P~Lp~LkkL~lsdn~~~~~~~l---~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 57 TLTNFPKLPKLKKLELSDNYRRVSGGL---EVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred ecccCCCcchhhhhcccCCcccccccc---eehhhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCcc
Confidence 3444567778888888643211 112 122334488888888774321 111 11235667777777777643
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=89.95 E-value=0.12 Score=42.06 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=34.3
Q ss_pred CcccccEEEecccccccee-eecCCcCCccceEeeccCc--cccccccc----ccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLEEWT-EIEEGALPSLKYLQLHKCL--KLRMLLED----LQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~-~~~~g~mp~L~~L~i~~c~--~l~~lp~g----l~~l~sL~~L~i~~~~ 102 (137)
-++.|++|+|++.++...- ....|.+|.|+.|.+..|. .+...+.+ ...+.+|+.|.+...+
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 4566777777764332110 0123678888888876653 22222221 2346677888876665
No 45
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.07 E-value=0.12 Score=39.04 Aligned_cols=62 Identities=24% Similarity=0.221 Sum_probs=36.6
Q ss_pred CcccccEEEecccc--ccceeeecCCcCCccceEeeccCc--ccccccccccCCCCCCEEEEcCCCH
Q 038559 41 GFHKLEILIIAFHV--LEEWTEIEEGALPSLKYLQLHKCL--KLRMLLEDLQFVATLKQLQILPLLD 103 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~--~~~~~~~~~g~mp~L~~L~i~~c~--~l~~lp~gl~~l~sL~~L~i~~~~~ 103 (137)
-+|+||.|.++... ....+.+-.-..|+|++|.+..-. .+.+++ .+..+.+|..|.+.+|++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSV 128 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCc
Confidence 45788888887631 111111222234999999885422 133443 245677888888888874
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=88.03 E-value=0.069 Score=44.75 Aligned_cols=60 Identities=28% Similarity=0.300 Sum_probs=38.2
Q ss_pred cCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 40 GGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 40 ~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
+++.+|+.|.+....++.. ..+.+.+| |-+|++ .|.++..+|..+.+++.|+.|.+.++|
T Consensus 186 ~~l~slr~l~vrRn~l~~l-p~El~~Lp-Li~lDf-ScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNHLEDL-PEELCSLP-LIRLDF-SCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred hhHHHHHHHHHhhhhhhhC-CHHHhCCc-eeeeec-ccCceeecchhhhhhhhheeeeeccCC
Confidence 3555566555554332221 12222222 444544 688999999999999999999998876
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=87.89 E-value=0.064 Score=41.98 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=7.1
Q ss_pred ccCCCccceeeec
Q 038559 12 IQLLPNLKTLTLW 24 (137)
Q Consensus 12 L~~Lp~L~~L~L~ 24 (137)
|+.|++|+.|+|+
T Consensus 325 La~L~~L~~LDLS 337 (490)
T KOG1259|consen 325 LAELPQLQLLDLS 337 (490)
T ss_pred hhhcccceEeecc
Confidence 4455555555554
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=85.61 E-value=0.4 Score=37.68 Aligned_cols=55 Identities=25% Similarity=0.202 Sum_probs=24.0
Q ss_pred cccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcC
Q 038559 44 KLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILP 100 (137)
Q Consensus 44 ~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~ 100 (137)
+|+.|++.+...... .-..+.+|.|+.|.+.+++ +..+|.....+++|+.|++++
T Consensus 141 nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 141 NLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred hcccccccccchhhh-hhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccC
Confidence 555555554322211 0122455555555555443 444444333344444444443
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=85.27 E-value=0.49 Score=38.57 Aligned_cols=70 Identities=24% Similarity=0.351 Sum_probs=44.2
Q ss_pred CCCccccccCCCccceeeecccccceecc---cee-cCccCcccccEEEeccccccceeeecC-CcCCccceEeec
Q 038559 5 SENSALVIQLLPNLKTLTLWLASKAKQLE---KEF-CSVGGFHKLEILIIAFHVLEEWTEIEE-GALPSLKYLQLH 75 (137)
Q Consensus 5 ~~~~l~~L~~Lp~L~~L~L~~~~~~~~l~---~~~-~~~~~f~~Lk~L~l~~~~~~~~~~~~~-g~mp~L~~L~i~ 75 (137)
..+.+..++.||.|..|.+..+. +..+. .+. .....||+|+.|.+...+..+|-.+.. -.+++|+.|.+.
T Consensus 260 ~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 260 DFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 44566778899999999887442 33331 000 112369999999998876666643332 457778877764
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=85.03 E-value=0.07 Score=46.07 Aligned_cols=81 Identities=22% Similarity=0.324 Sum_probs=36.2
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV 90 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l 90 (137)
.|+-||.|++|+|+... ..+. -.-..+++||.|+|.+.-+-....+...+. .|+.|.+.+- .++.+ .||++|
T Consensus 182 SLqll~ale~LnLshNk-~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie~L 253 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNK-FTKV----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIENL 253 (1096)
T ss_pred HHHHHHHhhhhccchhh-hhhh----HHHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhh-hhHHhh
Confidence 45667777777776321 1111 111256777777776632221111221111 2555555432 23332 244555
Q ss_pred CCCCEEEEc
Q 038559 91 ATLKQLQIL 99 (137)
Q Consensus 91 ~sL~~L~i~ 99 (137)
.+|+.|+++
T Consensus 254 ksL~~LDls 262 (1096)
T KOG1859|consen 254 KSLYGLDLS 262 (1096)
T ss_pred hhhhccchh
Confidence 555555543
No 51
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.82 E-value=0.061 Score=41.58 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=38.6
Q ss_pred CccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceee-ecCCcCCccceEeeccC
Q 038559 7 NSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTE-IEEGALPSLKYLQLHKC 77 (137)
Q Consensus 7 ~~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~-~~~g~mp~L~~L~i~~c 77 (137)
+|+.+..+||.|+.|.|+ ..++..+ -+...+.+|++|++........-. +-...+|+|+.|.+..-
T Consensus 32 ~DIsic~kMp~lEVLsLS-vNkIssL----~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 32 DDISICEKMPLLEVLSLS-VNKISSL----APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred cHHHHHHhcccceeEEee-ccccccc----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 567778899999999997 1124433 122356778888776532211000 11246888888877543
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=82.73 E-value=0.74 Score=36.81 Aligned_cols=15 Identities=13% Similarity=0.053 Sum_probs=7.5
Q ss_pred cCCCCCCEEEEcCCC
Q 038559 88 QFVATLKQLQILPLL 102 (137)
Q Consensus 88 ~~l~sL~~L~i~~~~ 102 (137)
.++.+|+.+++.+..
T Consensus 183 ~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 183 SELISLEELDLGGNS 197 (414)
T ss_pred hhccchHHHhccCCc
Confidence 445555555554443
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=82.39 E-value=0.37 Score=37.87 Aligned_cols=79 Identities=23% Similarity=0.277 Sum_probs=44.5
Q ss_pred ccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEE
Q 038559 17 NLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQL 96 (137)
Q Consensus 17 ~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L 96 (137)
+|+.|++.+.. +..+ .-..+.+++|+.|.+....+.+. ....+..+.|+.|.+.+. ++..+|..+.....|++|
T Consensus 141 nL~~L~l~~N~-i~~l---~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l 214 (394)
T COG4886 141 NLKELDLSDNK-IESL---PSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEEL 214 (394)
T ss_pred hcccccccccc-hhhh---hhhhhccccccccccCCchhhhh-hhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhh
Confidence 67777775332 3322 11234678888888887554432 232336777777777653 456666644445556666
Q ss_pred EEcCC
Q 038559 97 QILPL 101 (137)
Q Consensus 97 ~i~~~ 101 (137)
.+.+.
T Consensus 215 ~~~~N 219 (394)
T COG4886 215 DLSNN 219 (394)
T ss_pred hhcCC
Confidence 65554
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=82.05 E-value=0.38 Score=38.43 Aligned_cols=82 Identities=21% Similarity=0.285 Sum_probs=44.4
Q ss_pred ccCCCccceeeecccccceeccceecC-ccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559 12 IQLLPNLKTLTLWLASKAKQLEKEFCS-VGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV 90 (137)
Q Consensus 12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~-~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l 90 (137)
++.+.+|..|.+.+.. ++.+ .. ...+++|+.|++.+...... .....++.|+.|.+.+.+ +..+ .++.++
T Consensus 91 l~~~~~l~~l~l~~n~-i~~i----~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~-i~~~-~~~~~l 161 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-IEKI----ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNL-ISDI-SGLESL 161 (414)
T ss_pred cccccceeeeeccccc-hhhc----ccchhhhhcchheeccccccccc--cchhhccchhhheeccCc-chhc-cCCccc
Confidence 5667777777776432 4443 12 34577777777776433221 112346667777765543 3332 234446
Q ss_pred CCCCEEEEcCCC
Q 038559 91 ATLKQLQILPLL 102 (137)
Q Consensus 91 ~sL~~L~i~~~~ 102 (137)
++|+.+++.++.
T Consensus 162 ~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 162 KSLKLLDLSYNR 173 (414)
T ss_pred hhhhcccCCcch
Confidence 666666665543
No 55
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=80.20 E-value=0.36 Score=42.62 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=43.3
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
.++.|+.|.+.....-. ....-+.|.+|+.|.+ .|..+..+|.++..+.+|+.|.++...
T Consensus 66 ~l~~L~~ln~s~n~i~~-vp~s~~~~~~l~~lnL-~~n~l~~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 66 LLSHLRQLNLSRNYIRS-VPSSCSNMRNLQYLNL-KNNRLQSLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred hHHHHhhcccchhhHhh-Cchhhhhhhcchhhee-ccchhhcCchhHHhhhcccccccchhc
Confidence 45667777666532221 2344568999999977 478899999999999999999987653
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=78.42 E-value=10 Score=24.35 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=35.4
Q ss_pred ccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecC---CcCCccceEeeccCcccccccc-cc
Q 038559 12 IQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEE---GALPSLKYLQLHKCLKLRMLLE-DL 87 (137)
Q Consensus 12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~---g~mp~L~~L~i~~c~~l~~lp~-gl 87 (137)
+...++|+.+.+.+ ..+.++...|. ++++|+.+.+.+ ... .+.. ...++|+.+.+.. .+..++. .+
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~--~~~~l~~i~~~~-~~~---~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F 77 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFS--NCTSLKSINFPN-NLT---SIGDNAFSNCKSLESITFPN--NLKSIGDNAF 77 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTT--T-TT-SEEEESS-TTS---CE-TTTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred HhCCCCCCEEEECC--CeeEeChhhcc--cccccccccccc-ccc---ccceeeeecccccccccccc--cccccccccc
Confidence 45566777777753 23444221221 455788888765 222 1222 2355677777743 3444544 44
Q ss_pred cCCCCCCEEEEc
Q 038559 88 QFVATLKQLQIL 99 (137)
Q Consensus 88 ~~l~sL~~L~i~ 99 (137)
.+.++|+++.+.
T Consensus 78 ~~~~~l~~i~~~ 89 (129)
T PF13306_consen 78 SNCTNLKNIDIP 89 (129)
T ss_dssp TT-TTECEEEET
T ss_pred cccccccccccC
Confidence 567788888874
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=76.76 E-value=0.42 Score=37.44 Aligned_cols=71 Identities=24% Similarity=0.223 Sum_probs=48.5
Q ss_pred CCCcccccc-CCCccceeeecccccceeccceecC-ccCcccccEEEecccc-ccceeeecCCcCCccceEeeccCc
Q 038559 5 SENSALVIQ-LLPNLKTLTLWLASKAKQLEKEFCS-VGGFHKLEILIIAFHV-LEEWTEIEEGALPSLKYLQLHKCL 78 (137)
Q Consensus 5 ~~~~l~~L~-~Lp~L~~L~L~~~~~~~~l~~~~~~-~~~f~~Lk~L~l~~~~-~~~~~~~~~g~mp~L~~L~i~~c~ 78 (137)
...++.+|. +-|+|.+|+|+++..++.- ++. .-.|+.|+.|.+..|- ......++.+++|+|..|.+.+|-
T Consensus 301 ~~sh~~tL~~rcp~l~~LDLSD~v~l~~~---~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 301 QKSHLSTLVRRCPNLVHLDLSDSVMLKND---CFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhHHHHHHHhCCceeeeccccccccCch---HHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 344666665 5899999999977644421 221 1268999999998752 222223556899999999998875
No 58
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.65 E-value=1.9 Score=20.42 Aligned_cols=15 Identities=33% Similarity=0.749 Sum_probs=10.9
Q ss_pred CccceEeeccCcccc
Q 038559 67 PSLKYLQLHKCLKLR 81 (137)
Q Consensus 67 p~L~~L~i~~c~~l~ 81 (137)
|+|+.|.+..|+++.
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 677788888877654
No 59
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=74.53 E-value=0.14 Score=41.33 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=19.3
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEecc
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAF 52 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~ 52 (137)
..++.|++|+.|+|++.. ++.+.++.|. |+++|-+|.+++
T Consensus 85 ~aF~~l~~LRrLdLS~N~-Is~I~p~AF~--GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 85 GAFKTLHRLRRLDLSKNN-ISFIAPDAFK--GLASLLSLVLYG 124 (498)
T ss_pred hhccchhhhceecccccc-hhhcChHhhh--hhHhhhHHHhhc
Confidence 345667777777776332 4433222221 444454554444
No 60
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=72.44 E-value=2.5 Score=19.78 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=11.2
Q ss_pred CCccceEeeccCccccccccc
Q 038559 66 LPSLKYLQLHKCLKLRMLLED 86 (137)
Q Consensus 66 mp~L~~L~i~~c~~l~~lp~g 86 (137)
|++|+.|.+.++ +++.+|.+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 355666666544 45556554
No 61
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=72.44 E-value=2.5 Score=19.78 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=11.2
Q ss_pred CCccceEeeccCccccccccc
Q 038559 66 LPSLKYLQLHKCLKLRMLLED 86 (137)
Q Consensus 66 mp~L~~L~i~~c~~l~~lp~g 86 (137)
|++|+.|.+.++ +++.+|.+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 355666666544 45556554
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=71.60 E-value=1.2 Score=35.42 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=23.8
Q ss_pred CCccceEeeccCcccc--cccccccCCCCCCEEEEcCCC
Q 038559 66 LPSLKYLQLHKCLKLR--MLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 66 mp~L~~L~i~~c~~l~--~lp~gl~~l~sL~~L~i~~~~ 102 (137)
.|+|+.|.+..|..+. .+-...+.+++|++|+++.|.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 5678888777777542 222233556678888887776
No 63
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=70.04 E-value=2.6 Score=33.30 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=7.8
Q ss_pred CcccccEEEeccc
Q 038559 41 GFHKLEILIIAFH 53 (137)
Q Consensus 41 ~f~~Lk~L~l~~~ 53 (137)
.+++|..|++++.
T Consensus 327 ~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 327 ELPQLQLLDLSGN 339 (490)
T ss_pred hcccceEeecccc
Confidence 3566666666663
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=64.64 E-value=0.27 Score=34.33 Aligned_cols=52 Identities=21% Similarity=0.180 Sum_probs=32.9
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLK 94 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~ 94 (137)
-||-++.|++.+..+.+. ..+..+||.|+.|.+.+-+ +...|.-+..+.+|.
T Consensus 75 kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDV-PEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLD 126 (177)
T ss_pred ccchhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCc-cccchHHHHHHHhHH
Confidence 567778888877554443 3556789999999997654 445555443333333
No 65
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=63.37 E-value=0.52 Score=39.76 Aligned_cols=83 Identities=25% Similarity=0.326 Sum_probs=50.1
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV 90 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l 90 (137)
.++.|..|.+|+|... .+..++... .+--|+.|.+.+.++... ..+.|..+.|..|....| ++.++|..+..+
T Consensus 116 ~i~~L~~lt~l~ls~N-qlS~lp~~l----C~lpLkvli~sNNkl~~l-p~~ig~~~tl~~ld~s~n-ei~slpsql~~l 188 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSN-QLSHLPDGL----CDLPLKVLIVSNNKLTSL-PEEIGLLPTLAHLDVSKN-EIQSLPSQLGYL 188 (722)
T ss_pred hhhhhhHHHHhhhccc-hhhcCChhh----hcCcceeEEEecCccccC-CcccccchhHHHhhhhhh-hhhhchHHhhhH
Confidence 4567777777777622 133332111 223478888877544332 455567888888877654 577777767677
Q ss_pred CCCCEEEEcC
Q 038559 91 ATLKQLQILP 100 (137)
Q Consensus 91 ~sL~~L~i~~ 100 (137)
++|+.|.+..
T Consensus 189 ~slr~l~vrR 198 (722)
T KOG0532|consen 189 TSLRDLNVRR 198 (722)
T ss_pred HHHHHHHHhh
Confidence 7776665543
No 66
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=55.91 E-value=0.56 Score=40.83 Aligned_cols=86 Identities=24% Similarity=0.167 Sum_probs=52.0
Q ss_pred cccccCCCccceeeec-ccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeec-cCc-ccccccc
Q 038559 9 ALVIQLLPNLKTLTLW-LASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLH-KCL-KLRMLLE 85 (137)
Q Consensus 9 l~~L~~Lp~L~~L~L~-~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~-~c~-~l~~lp~ 85 (137)
+..|-.+|.|++|+|. |+- ..++ .++..+.. |..|.|.+..+.... ....+.+|+.|++. +|- +...+-
T Consensus 202 v~~Lr~l~~LkhLDlsyN~L--~~vp--~l~~~gc~-L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~- 273 (1096)
T KOG1859|consen 202 VDNLRRLPKLKHLDLSYNCL--RHVP--QLSMVGCK-LQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELE- 273 (1096)
T ss_pred hHHHHhcccccccccccchh--cccc--ccchhhhh-heeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhh-
Confidence 3467789999999997 543 3221 12333443 888999985544321 11357788888885 231 112221
Q ss_pred cccCCCCCCEEEEcCCC
Q 038559 86 DLQFVATLKQLQILPLL 102 (137)
Q Consensus 86 gl~~l~sL~~L~i~~~~ 102 (137)
-+..|.+|+.|++.|+|
T Consensus 274 pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 274 PLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HHHHHHHHHHHhhcCCc
Confidence 13457788889998877
No 67
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=55.62 E-value=1.9 Score=34.19 Aligned_cols=61 Identities=20% Similarity=0.146 Sum_probs=29.3
Q ss_pred CcccccEEEeccccccce--ee----ecCCcCCccceEeeccCccc-c---cccccccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLEEW--TE----IEEGALPSLKYLQLHKCLKL-R---MLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~--~~----~~~g~mp~L~~L~i~~c~~l-~---~lp~gl~~l~sL~~L~i~~~~ 102 (137)
.||.|++|++.+|.+..- .. +. ...|+|+.|.+.++.-- + .+-..+...+.|++|.+.+|.
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~~~al~-~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAFVDALK-ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccchheeecccccccccccHHHHHHHHh-ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 456666666666533211 00 11 23677777766655421 1 111223335566666666653
No 68
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=48.33 E-value=13 Score=16.84 Aligned_cols=11 Identities=36% Similarity=0.591 Sum_probs=3.9
Q ss_pred CccceEeeccC
Q 038559 67 PSLKYLQLHKC 77 (137)
Q Consensus 67 p~L~~L~i~~c 77 (137)
++|+.|.|.+|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 34444444443
No 69
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=42.54 E-value=9.8 Score=31.15 Aligned_cols=93 Identities=17% Similarity=0.049 Sum_probs=49.6
Q ss_pred ccccc-CCCccceeeecccccceeccceecCccCcccccEEEecccccc-ce-eeecCCcCCccceEeeccCccccc---
Q 038559 9 ALVIQ-LLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLE-EW-TEIEEGALPSLKYLQLHKCLKLRM--- 82 (137)
Q Consensus 9 l~~L~-~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~-~~-~~~~~g~mp~L~~L~i~~c~~l~~--- 82 (137)
+..|+ +-++|+.|.+..|......+...+ ....+.|+.+.+..+..- .. +.--...-|.|+.|.+..|.....
T Consensus 312 l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi 390 (483)
T KOG4341|consen 312 LWALGQHCHNLQVLELSGCQQFSDRGFTML-GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI 390 (483)
T ss_pred HHHHhcCCCceEEEeccccchhhhhhhhhh-hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh
Confidence 33444 356777777776553332210011 124456666666553211 00 000113578899999988864432
Q ss_pred --ccccccCCCCCCEEEEcCCC
Q 038559 83 --LLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 83 --lp~gl~~l~sL~~L~i~~~~ 102 (137)
+-.+-.++..|..+++.+||
T Consensus 391 ~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 391 RHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred hhhhhccccccccceeeecCCC
Confidence 22233445668889999999
No 70
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=37.45 E-value=10 Score=18.37 Aligned_cols=14 Identities=50% Similarity=0.795 Sum_probs=9.3
Q ss_pred cccCCCccceeeec
Q 038559 11 VIQLLPNLKTLTLW 24 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~ 24 (137)
++..||+|+.|+..
T Consensus 8 Vi~~LPqL~~LD~~ 21 (26)
T smart00446 8 VIRLLPQLRKLDXX 21 (26)
T ss_pred HHHHCCccceeccc
Confidence 45667777777653
No 71
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.02 E-value=22 Score=28.19 Aligned_cols=57 Identities=16% Similarity=0.283 Sum_probs=31.8
Q ss_pred CcccccEEEeccccccceeeecC-CcCCccceEeeccCcccccccc------cccCCCCCCEEE
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEE-GALPSLKYLQLHKCLKLRMLLE------DLQFVATLKQLQ 97 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~-g~mp~L~~L~i~~c~~l~~lp~------gl~~l~sL~~L~ 97 (137)
.||.+-.|.+...+.-.|-.+++ ..||.|..|++.+.|-...+-. -|..+++++-|.
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 45666666665544444433332 4588888888877764443322 234556665554
No 72
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.38 E-value=40 Score=26.75 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=9.4
Q ss_pred ccccCCCccceeeec
Q 038559 10 LVIQLLPNLKTLTLW 24 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~ 24 (137)
.++.+||.|+.|.|+
T Consensus 91 ~ile~lP~l~~LNls 105 (418)
T KOG2982|consen 91 AILEQLPALTTLNLS 105 (418)
T ss_pred HHHhcCccceEeecc
Confidence 345566666666665
No 73
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=27.40 E-value=40 Score=21.78 Aligned_cols=30 Identities=27% Similarity=0.165 Sum_probs=21.1
Q ss_pred EcCCCHHHHHhhCCCCCcCcceeeccceeeecccc
Q 038559 98 ILPLLDEHKERLKPYGGEENYKIRHIPQTPGRGYS 132 (137)
Q Consensus 98 i~~~~~~l~~~~~~~~~~~~~~i~hi~~i~~~~~~ 132 (137)
-++||+++++.++ ++.+.+.||...+.+++
T Consensus 42 AsN~P~~~k~~ie-----yYAkLs~ipV~~y~Gt~ 71 (100)
T COG1911 42 ASNCPKELKEDIE-----YYAKLSDIPVYVYEGTS 71 (100)
T ss_pred ecCCCHHHHHHHH-----HHHHHcCCcEEEecCCc
Confidence 3678877776664 57778888877766554
No 74
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=22.87 E-value=52 Score=15.86 Aligned_cols=17 Identities=41% Similarity=0.393 Sum_probs=8.1
Q ss_pred ccceEeeccCcccccccc
Q 038559 68 SLKYLQLHKCLKLRMLLE 85 (137)
Q Consensus 68 ~L~~L~i~~c~~l~~lp~ 85 (137)
+|+.|.+.+ .+|+++|+
T Consensus 3 ~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSN-NQLTSLPE 19 (26)
T ss_pred ccceeecCC-CccccCcc
Confidence 455555432 33555554
Done!