Query 038559
Match_columns 137
No_of_seqs 176 out of 1075
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 21:22:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 98.7 4.6E-08 1.6E-12 74.1 7.3 87 12-102 202-288 (328)
2 3rgz_A Protein brassinosteroid 98.6 2.4E-08 8.3E-13 83.4 5.4 113 11-127 627-766 (768)
3 3e6j_A Variable lymphocyte rec 98.6 2.9E-07 1E-11 66.2 9.4 89 10-102 58-146 (229)
4 4fcg_A Uncharacterized protein 98.6 1.1E-07 3.9E-12 71.9 6.4 88 10-100 223-310 (328)
5 4ezg_A Putative uncharacterize 98.5 1.9E-07 6.3E-12 65.6 6.2 87 10-101 60-146 (197)
6 3m19_A Variable lymphocyte rec 98.5 1.1E-06 3.7E-11 63.8 9.7 15 11-25 54-68 (251)
7 4ezg_A Putative uncharacterize 98.4 5.7E-07 1.9E-11 63.1 7.3 92 7-102 79-170 (197)
8 2o6s_A Variable lymphocyte rec 98.4 2E-06 6.7E-11 60.6 10.0 87 11-101 47-134 (208)
9 2o6r_A Variable lymphocyte rec 98.4 8.5E-07 2.9E-11 61.0 7.7 89 10-102 46-135 (177)
10 3rfs_A Internalin B, repeat mo 98.4 1.9E-06 6.4E-11 63.3 10.0 17 10-26 79-95 (272)
11 2o6q_A Variable lymphocyte rec 98.4 2.2E-06 7.7E-11 62.8 9.5 36 65-101 131-167 (270)
12 2v9t_B SLIT homolog 2 protein 98.4 1.9E-06 6.6E-11 61.6 9.0 15 11-25 51-65 (220)
13 2v70_A SLIT-2, SLIT homolog 2 98.3 1.5E-06 5.3E-11 62.1 7.6 61 41-102 103-164 (220)
14 2wfh_A SLIT homolog 2 protein 98.3 1.9E-06 6.6E-11 60.5 7.8 89 10-102 48-137 (193)
15 2v70_A SLIT-2, SLIT homolog 2 98.3 2.7E-06 9.2E-11 60.8 8.3 88 11-102 52-140 (220)
16 1w8a_A SLIT protein; signaling 98.3 2.6E-06 8.9E-11 59.6 8.1 88 11-102 49-137 (192)
17 3v47_A TOLL-like receptor 5B a 98.3 4.3E-06 1.5E-10 65.0 10.1 16 11-26 294-309 (455)
18 2ell_A Acidic leucine-rich nuc 98.3 1.1E-06 3.8E-11 59.8 5.8 85 12-102 45-131 (168)
19 2o6q_A Variable lymphocyte rec 98.3 4.9E-06 1.7E-10 60.9 9.5 60 41-101 131-191 (270)
20 2v9t_B SLIT homolog 2 protein 98.3 2E-06 6.7E-11 61.6 7.2 89 10-102 74-163 (220)
21 3rfs_A Internalin B, repeat mo 98.3 2.7E-06 9.1E-11 62.5 7.8 36 65-101 179-215 (272)
22 3zyi_A Leucine-rich repeat-con 98.3 1.8E-06 6.1E-11 67.7 7.2 61 41-101 145-206 (452)
23 3m19_A Variable lymphocyte rec 98.3 2.9E-06 9.8E-11 61.5 7.8 60 42-102 130-190 (251)
24 1ozn_A Reticulon 4 receptor; N 98.3 3.1E-06 1.1E-10 62.3 8.0 14 11-24 100-113 (285)
25 4g8a_A TOLL-like receptor 4; l 98.3 1.8E-06 6.2E-11 69.3 7.2 86 11-101 71-158 (635)
26 3v47_A TOLL-like receptor 5B a 98.3 3.8E-06 1.3E-10 65.3 8.7 91 10-102 48-140 (455)
27 2o6s_A Variable lymphocyte rec 98.3 3.8E-06 1.3E-10 59.1 7.8 95 4-102 64-159 (208)
28 3o6n_A APL1; leucine-rich repe 98.2 3.5E-06 1.2E-10 64.6 8.2 88 10-102 242-329 (390)
29 3zyj_A Leucine-rich repeat-con 98.2 2.7E-06 9.1E-11 66.5 7.3 61 41-101 134-195 (440)
30 2z62_A TOLL-like receptor 4, v 98.2 2.7E-06 9.3E-11 62.3 6.9 38 64-102 121-160 (276)
31 1ozn_A Reticulon 4 receptor; N 98.2 7.8E-06 2.7E-10 60.1 9.4 87 11-101 51-139 (285)
32 1p9a_G Platelet glycoprotein I 98.2 3.9E-06 1.3E-10 62.4 7.7 60 41-102 146-206 (290)
33 2z63_A TOLL-like receptor 4, v 98.2 9.1E-06 3.1E-10 64.8 9.9 61 41-101 443-504 (570)
34 2je0_A Acidic leucine-rich nuc 98.2 1.7E-06 5.8E-11 57.8 4.7 86 11-102 37-124 (149)
35 3e6j_A Variable lymphocyte rec 98.2 5.4E-06 1.9E-10 59.5 7.5 90 8-102 80-170 (229)
36 1ogq_A PGIP-2, polygalacturona 98.2 3.8E-06 1.3E-10 63.0 6.9 89 10-101 70-159 (313)
37 2ell_A Acidic leucine-rich nuc 98.2 1.6E-06 5.3E-11 59.1 4.2 88 10-102 65-158 (168)
38 2z66_A Variable lymphocyte rec 98.2 1.1E-05 3.9E-10 59.7 9.2 88 11-102 121-210 (306)
39 3vq2_A TLR4, TOLL-like recepto 98.1 4.8E-06 1.6E-10 67.1 7.3 62 41-102 102-164 (606)
40 3rgz_A Protein brassinosteroid 98.1 4.1E-06 1.4E-10 70.0 6.8 37 65-101 488-524 (768)
41 2z62_A TOLL-like receptor 4, v 98.1 7.6E-06 2.6E-10 59.9 7.5 88 11-102 47-135 (276)
42 1ogq_A PGIP-2, polygalacturona 98.1 4.4E-06 1.5E-10 62.6 6.0 89 10-101 95-184 (313)
43 3oja_B Anopheles plasmodium-re 98.1 7.8E-06 2.7E-10 66.4 7.9 88 10-102 248-335 (597)
44 3o6n_A APL1; leucine-rich repe 98.1 7.1E-06 2.4E-10 62.9 7.2 59 41-101 115-175 (390)
45 2z66_A Variable lymphocyte rec 98.1 2.1E-05 7.2E-10 58.2 9.5 88 10-101 144-233 (306)
46 2xwt_C Thyrotropin receptor; s 98.1 7E-06 2.4E-10 58.9 6.7 86 11-101 50-140 (239)
47 2xot_A Amphoterin-induced prot 98.1 7.8E-06 2.7E-10 62.4 7.2 60 41-101 110-173 (361)
48 2z80_A TOLL-like receptor 2, v 98.1 4.8E-06 1.6E-10 63.1 6.0 87 11-101 71-159 (353)
49 3j0a_A TOLL-like receptor 5; m 98.1 8.5E-06 2.9E-10 68.7 8.1 38 64-102 120-159 (844)
50 2xwt_C Thyrotropin receptor; s 98.1 6.8E-06 2.3E-10 59.0 6.5 87 11-101 75-166 (239)
51 2z63_A TOLL-like receptor 4, v 98.1 8E-06 2.7E-10 65.1 7.5 88 11-102 440-529 (570)
52 3zyi_A Leucine-rich repeat-con 98.1 1.3E-05 4.6E-10 62.7 8.7 17 10-26 141-157 (452)
53 4g8a_A TOLL-like receptor 4; l 98.1 7.4E-06 2.5E-10 65.7 7.3 88 11-102 489-578 (635)
54 2id5_A Lingo-1, leucine rich r 98.1 1E-05 3.4E-10 63.6 7.8 36 65-101 126-162 (477)
55 3zyj_A Leucine-rich repeat-con 98.1 1.6E-05 5.5E-10 62.0 8.7 16 11-26 131-146 (440)
56 3oja_B Anopheles plasmodium-re 98.1 8E-06 2.7E-10 66.3 7.2 60 41-102 121-182 (597)
57 3vq2_A TLR4, TOLL-like recepto 98.1 9.1E-06 3.1E-10 65.5 7.4 36 65-101 519-555 (606)
58 2id5_A Lingo-1, leucine rich r 98.1 2.3E-05 7.7E-10 61.5 9.4 61 41-102 126-187 (477)
59 2z80_A TOLL-like receptor 2, v 98.0 7.4E-06 2.5E-10 62.0 6.2 90 10-102 94-185 (353)
60 2r9u_A Variable lymphocyte rec 98.0 1E-05 3.4E-10 55.9 6.3 82 16-102 33-116 (174)
61 2z7x_B TOLL-like receptor 1, v 98.0 1.3E-05 4.6E-10 63.4 7.8 87 10-102 39-126 (520)
62 2xot_A Amphoterin-induced prot 98.0 1.3E-05 4.6E-10 61.1 7.4 87 12-102 59-147 (361)
63 2ifg_A High affinity nerve gro 98.0 2E-05 6.8E-10 59.5 8.2 91 9-102 24-114 (347)
64 1p9a_G Platelet glycoprotein I 98.0 4.5E-05 1.6E-09 56.6 9.9 85 10-101 49-134 (290)
65 2z81_A CD282 antigen, TOLL-lik 98.0 7.8E-06 2.7E-10 65.0 6.1 16 11-26 45-60 (549)
66 3o53_A Protein LRIM1, AGAP0063 98.0 1.5E-05 5.2E-10 59.6 7.2 59 42-102 190-248 (317)
67 4b8c_D Glucose-repressible alc 98.0 6.1E-06 2.1E-10 68.9 5.4 85 12-102 243-327 (727)
68 1dce_A Protein (RAB geranylger 98.0 9.7E-06 3.3E-10 66.0 6.5 87 9-102 456-544 (567)
69 1a9n_A U2A', U2A'; complex (nu 98.0 9.5E-06 3.3E-10 55.7 5.5 86 10-102 35-124 (176)
70 3g39_A Variable lymphocyte rec 98.0 1.4E-05 4.8E-10 54.9 6.3 83 15-102 29-113 (170)
71 3a79_B TLR6, VLRB.59, TOLL-lik 98.0 3.6E-05 1.2E-09 61.8 9.2 88 8-102 68-157 (562)
72 3t6q_A CD180 antigen; protein- 98.0 2.2E-05 7.7E-10 63.2 8.0 14 12-25 421-434 (606)
73 2z81_A CD282 antigen, TOLL-lik 98.0 1.3E-05 4.5E-10 63.7 6.4 90 10-102 68-159 (549)
74 4fmz_A Internalin; leucine ric 98.0 1.5E-05 5.1E-10 59.9 6.3 81 12-101 217-297 (347)
75 3t6q_A CD180 antigen; protein- 97.9 2.4E-05 8.1E-10 63.0 7.7 37 65-102 348-387 (606)
76 4fmz_A Internalin; leucine ric 97.9 2.6E-05 8.8E-10 58.6 7.4 16 10-25 60-75 (347)
77 1a9n_A U2A', U2A'; complex (nu 97.9 4.6E-06 1.6E-10 57.3 2.9 90 10-103 58-152 (176)
78 1ziw_A TOLL-like receptor 3; i 97.9 1.8E-05 6.3E-10 64.6 6.9 61 41-101 95-155 (680)
79 2o6r_A Variable lymphocyte rec 97.9 8.8E-05 3E-09 50.7 8.8 84 14-102 26-111 (177)
80 1h6t_A Internalin B; cell adhe 97.9 3.6E-05 1.2E-09 57.2 7.2 15 87-101 196-210 (291)
81 1h6u_A Internalin H; cell adhe 97.9 3.7E-05 1.3E-09 57.5 7.4 40 9-53 56-95 (308)
82 1h6u_A Internalin H; cell adhe 97.9 3.4E-05 1.2E-09 57.6 7.0 13 12-24 81-93 (308)
83 2ast_B S-phase kinase-associat 97.9 3.2E-06 1.1E-10 63.3 1.3 61 42-102 141-206 (336)
84 2ast_B S-phase kinase-associat 97.9 1E-06 3.6E-11 65.9 -1.5 38 65-102 220-258 (336)
85 2z7x_B TOLL-like receptor 1, v 97.9 5.8E-05 2E-09 59.7 8.5 14 11-24 343-356 (520)
86 4eco_A Uncharacterized protein 97.9 2.8E-05 9.5E-10 63.7 6.8 62 41-102 204-284 (636)
87 2ra8_A Uncharacterized protein 97.9 3.4E-06 1.1E-10 65.2 1.1 97 4-102 205-318 (362)
88 3o53_A Protein LRIM1, AGAP0063 97.8 4.7E-05 1.6E-09 56.9 7.4 87 11-102 139-225 (317)
89 1ziw_A TOLL-like receptor 3; i 97.8 6.5E-05 2.2E-09 61.3 8.5 89 10-102 43-132 (680)
90 3oja_A Leucine-rich immune mol 97.8 4.1E-05 1.4E-09 60.9 7.2 59 42-102 190-248 (487)
91 1m9s_A Internalin B; cell inva 97.8 4.3E-05 1.5E-09 62.6 7.1 34 66-101 174-207 (605)
92 2je0_A Acidic leucine-rich nuc 97.8 3.1E-05 1.1E-09 51.5 5.2 82 14-102 15-99 (149)
93 1h6t_A Internalin B; cell adhe 97.8 3.8E-05 1.3E-09 57.0 6.2 85 9-102 105-189 (291)
94 1w8a_A SLIT protein; signaling 97.8 9.4E-05 3.2E-09 51.5 7.8 83 17-102 30-113 (192)
95 3a79_B TLR6, VLRB.59, TOLL-lik 97.8 0.00011 3.7E-09 59.0 9.0 35 67-102 450-484 (562)
96 1o6v_A Internalin A; bacterial 97.8 5.7E-05 1.9E-09 59.3 7.2 84 9-101 61-144 (466)
97 1xku_A Decorin; proteoglycan, 97.8 5.2E-05 1.8E-09 56.8 6.5 61 41-102 214-274 (330)
98 4b8c_D Glucose-repressible alc 97.8 4.2E-05 1.4E-09 63.9 6.4 87 10-102 218-304 (727)
99 4ecn_A Leucine-rich repeat pro 97.8 4.2E-05 1.4E-09 65.3 6.4 20 82-101 797-816 (876)
100 1xeu_A Internalin C; cellular 97.8 6.6E-05 2.3E-09 55.0 6.7 37 64-102 125-161 (263)
101 1xku_A Decorin; proteoglycan, 97.7 0.00011 3.6E-09 55.0 7.9 40 11-53 71-110 (330)
102 1m9s_A Internalin B; cell inva 97.7 4.9E-05 1.7E-09 62.3 6.3 85 9-102 102-186 (605)
103 2wfh_A SLIT homolog 2 protein 97.7 0.00015 5.1E-09 50.7 8.0 82 16-102 31-113 (193)
104 4eco_A Uncharacterized protein 97.7 5.3E-05 1.8E-09 62.0 6.5 53 44-98 489-543 (636)
105 3bz5_A Internalin-J, INLJ; leu 97.7 0.00018 6.1E-09 56.8 9.3 79 11-101 59-137 (457)
106 2ft3_A Biglycan; proteoglycan, 97.7 0.00015 5E-09 54.4 8.3 85 11-102 73-158 (332)
107 3oja_A Leucine-rich immune mol 97.7 9.6E-05 3.3E-09 58.8 7.5 87 11-102 139-225 (487)
108 1xeu_A Internalin C; cellular 97.7 0.00014 4.7E-09 53.3 7.3 35 65-101 148-182 (263)
109 4ay9_X Follicle-stimulating ho 97.6 8.2E-05 2.8E-09 56.4 5.9 79 16-100 177-255 (350)
110 1o6v_A Internalin A; bacterial 97.6 0.00011 3.8E-09 57.6 6.5 36 64-101 350-385 (466)
111 3j0a_A TOLL-like receptor 5; m 97.6 0.00023 8E-09 60.0 8.8 89 10-102 284-373 (844)
112 4ay9_X Follicle-stimulating ho 97.6 0.00016 5.3E-09 54.9 6.7 84 16-102 30-115 (350)
113 4ecn_A Leucine-rich repeat pro 97.6 3.4E-05 1.2E-09 65.8 3.0 38 41-78 489-526 (876)
114 2ft3_A Biglycan; proteoglycan, 97.5 7.4E-05 2.5E-09 56.0 4.5 61 41-102 215-275 (332)
115 3e4g_A ATP synthase subunit S, 97.5 3.9E-05 1.3E-09 53.7 2.6 82 17-102 62-150 (176)
116 4glp_A Monocyte differentiatio 97.5 0.00015 5.2E-09 53.9 5.4 87 12-102 193-283 (310)
117 1wwl_A Monocyte differentiatio 97.5 0.00013 4.3E-09 54.5 4.9 39 64-102 170-212 (312)
118 1wwl_A Monocyte differentiatio 97.5 0.00016 5.3E-09 54.0 5.3 86 14-102 93-184 (312)
119 1ds9_A Outer arm dynein; leuci 97.4 7E-06 2.4E-10 57.5 -2.4 37 65-102 113-151 (198)
120 3bz5_A Internalin-J, INLJ; leu 97.4 0.00057 2E-08 53.9 8.3 13 12-24 81-93 (457)
121 3e4g_A ATP synthase subunit S, 97.4 3.7E-05 1.3E-09 53.9 0.9 80 2-82 71-154 (176)
122 3g06_A SSPH2 (leucine-rich rep 97.3 0.00036 1.2E-08 57.4 6.4 57 41-102 239-295 (622)
123 1ds9_A Outer arm dynein; leuci 97.3 5.6E-06 1.9E-10 58.0 -4.1 84 11-102 43-126 (198)
124 4glp_A Monocyte differentiatio 97.3 0.00035 1.2E-08 51.9 5.3 62 41-102 143-208 (310)
125 1dce_A Protein (RAB geranylger 97.3 0.00078 2.7E-08 54.7 7.6 78 17-102 442-519 (567)
126 2ca6_A RAN GTPase-activating p 97.2 9.2E-05 3.1E-09 56.6 1.3 37 66-102 273-314 (386)
127 3g39_A Variable lymphocyte rec 97.1 0.0008 2.7E-08 45.9 5.5 67 8-77 46-112 (170)
128 1jl5_A Outer protein YOPM; leu 97.1 0.0015 5.1E-08 51.5 7.6 55 41-101 151-205 (454)
129 2r9u_A Variable lymphocyte rec 97.1 0.0019 6.5E-08 44.3 7.0 62 40-102 30-92 (174)
130 3ogk_B Coronatine-insensitive 96.9 0.00015 5.3E-09 57.9 -0.1 61 42-102 462-524 (592)
131 2p1m_B Transport inhibitor res 96.8 0.00017 5.7E-09 57.7 -0.5 38 65-102 154-195 (594)
132 2ca6_A RAN GTPase-activating p 96.8 0.00031 1.1E-08 53.6 1.0 62 41-102 214-285 (386)
133 2p1m_B Transport inhibitor res 96.7 0.00018 6.3E-09 57.5 -0.6 87 14-101 128-221 (594)
134 1jl5_A Outer protein YOPM; leu 96.7 0.002 6.8E-08 50.7 5.1 57 42-102 336-407 (454)
135 3g06_A SSPH2 (leucine-rich rep 96.4 0.0086 2.9E-07 49.2 7.2 13 14-26 79-91 (622)
136 3cvr_A Invasion plasmid antige 96.3 0.006 2E-07 49.7 5.5 55 43-102 180-241 (571)
137 3cvr_A Invasion plasmid antige 96.1 0.018 6E-07 46.9 7.3 11 91-101 180-190 (571)
138 1z7x_W Ribonuclease inhibitor; 95.9 0.00084 2.9E-08 52.0 -1.1 90 12-102 24-124 (461)
139 3ogk_B Coronatine-insensitive 95.8 0.0048 1.7E-07 49.2 3.0 13 41-53 291-303 (592)
140 2ra8_A Uncharacterized protein 95.7 0.012 4E-07 45.3 4.8 14 89-102 250-263 (362)
141 2ifg_A High affinity nerve gro 95.6 0.02 6.8E-07 42.8 5.5 62 40-102 28-91 (347)
142 3goz_A Leucine-rich repeat-con 95.4 0.0024 8.4E-08 48.3 -0.1 17 10-26 44-61 (362)
143 3goz_A Leucine-rich repeat-con 95.4 0.0029 1E-07 47.9 0.2 42 12-54 18-62 (362)
144 1z7x_W Ribonuclease inhibitor; 95.4 0.00061 2.1E-08 52.8 -3.6 36 66-102 369-409 (461)
145 3sb4_A Hypothetical leucine ri 94.6 0.085 2.9E-06 39.2 6.3 78 15-101 225-307 (329)
146 3sb4_A Hypothetical leucine ri 94.5 0.11 3.7E-06 38.6 6.8 80 10-98 244-328 (329)
147 3rw6_A Nuclear RNA export fact 94.2 0.021 7.2E-07 42.2 2.2 61 40-102 167-231 (267)
148 3un9_A NLR family member X1; l 92.7 0.0066 2.2E-07 46.7 -2.8 37 66-102 182-222 (372)
149 3rw6_A Nuclear RNA export fact 92.0 0.067 2.3E-06 39.5 2.0 82 13-97 167-257 (267)
150 3un9_A NLR family member X1; l 91.5 0.017 5.8E-07 44.3 -1.7 88 14-102 153-250 (372)
151 1io0_A Tropomodulin; LRR prote 88.9 0.063 2.2E-06 36.9 -0.5 92 11-102 31-134 (185)
152 1io0_A Tropomodulin; LRR prote 84.2 0.14 4.8E-06 35.1 -0.8 91 11-102 60-162 (185)
153 4fdw_A Leucine rich hypothetic 80.1 5.1 0.00017 30.7 6.6 32 67-101 323-355 (401)
154 4fdw_A Leucine rich hypothetic 75.1 9.1 0.00031 29.3 6.7 32 66-99 299-331 (401)
155 3rfe_A Platelet glycoprotein I 72.4 2.3 8E-05 27.4 2.4 33 17-52 32-64 (130)
156 3rfe_A Platelet glycoprotein I 70.8 3.8 0.00013 26.3 3.2 34 68-102 32-66 (130)
157 4gt6_A Cell surface protein; l 70.6 12 0.00042 28.0 6.5 54 43-102 311-368 (394)
158 4fs7_A Uncharacterized protein 66.8 16 0.00053 27.4 6.3 53 42-100 319-375 (394)
159 4h09_A Hypothetical leucine ri 61.7 12 0.00042 27.7 4.9 10 14-23 238-247 (379)
160 4fs7_A Uncharacterized protein 52.0 17 0.00059 27.2 4.3 50 41-96 341-393 (394)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.67 E-value=4.6e-08 Score=74.13 Aligned_cols=87 Identities=25% Similarity=0.211 Sum_probs=51.3
Q ss_pred ccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCC
Q 038559 12 IQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVA 91 (137)
Q Consensus 12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~ 91 (137)
++++++|++|.|.++. +..++ ...+.+++|+.|++.++.....+....+.+++|+.|.+.+|..+..+|..+.+++
T Consensus 202 l~~l~~L~~L~L~~N~-l~~l~---~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSP-LSALG---PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp GGGCTTCCEEEEESSC-CCCCC---GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred hcCCCCCCEEEccCCC-CCcCc---hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence 4455555555554332 22221 1123566677777766444433323335677777777777777777777777777
Q ss_pred CCCEEEEcCCC
Q 038559 92 TLKQLQILPLL 102 (137)
Q Consensus 92 sL~~L~i~~~~ 102 (137)
+|++|++++|+
T Consensus 278 ~L~~L~L~~n~ 288 (328)
T 4fcg_A 278 QLEKLDLRGCV 288 (328)
T ss_dssp TCCEEECTTCT
T ss_pred CCCEEeCCCCC
Confidence 77777777765
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.64 E-value=2.4e-08 Score=83.41 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=71.2
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV 90 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l 90 (137)
.++.+++|++|+|++..-...+| ...+.+++|+.|++.+..+...+...-+.|++|+.|.+.++.-...+|..+.++
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip---~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIP---KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCC---GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred hhhccccccEEECcCCcccccCC---HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 46778999999998554222332 123478999999999876654444445789999999998876556789999999
Q ss_pred CCCCEEEEcCCC---------------------------HHHHHhhCCCCCcCcceeeccceee
Q 038559 91 ATLKQLQILPLL---------------------------DEHKERLKPYGGEENYKIRHIPQTP 127 (137)
Q Consensus 91 ~sL~~L~i~~~~---------------------------~~l~~~~~~~~~~~~~~i~hi~~i~ 127 (137)
++|+.|++++++ ..+ ..|....+++|++|+|+|++.
T Consensus 704 ~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l-~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 704 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS-CCCCSCC--------------
T ss_pred CCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC-cCCCCCccCCCCCCCCccccC
Confidence 999999998763 011 256677889999999999875
No 3
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.60 E-value=2.9e-07 Score=66.25 Aligned_cols=89 Identities=22% Similarity=0.128 Sum_probs=53.7
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccC
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQF 89 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~ 89 (137)
..++.+++|++|.|.+.. +..++.+.+ ..+++|+.|++.+..+.......-+.+++|+.|.+.++ ++..+|.++.+
T Consensus 58 ~~~~~l~~L~~L~L~~N~-l~~i~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~ 133 (229)
T 3e6j_A 58 GVFDSLINLKELYLGSNQ-LGALPVGVF--DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIER 133 (229)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGG
T ss_pred HHhhCccCCcEEECCCCC-CCCcChhhc--ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCccccc
Confidence 346777888888887443 344421111 35677888888775443221111245777777777654 36677777777
Q ss_pred CCCCCEEEEcCCC
Q 038559 90 VATLKQLQILPLL 102 (137)
Q Consensus 90 l~sL~~L~i~~~~ 102 (137)
+++|+.|+++++.
T Consensus 134 l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 134 LTHLTHLALDQNQ 146 (229)
T ss_dssp CTTCSEEECCSSC
T ss_pred CCCCCEEECCCCc
Confidence 7777777776654
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.55 E-value=1.1e-07 Score=71.94 Aligned_cols=88 Identities=22% Similarity=0.212 Sum_probs=70.6
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccC
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQF 89 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~ 89 (137)
+.++.+++|++|+|.++.....++ ...+.+++|+.|++.++.....+....+.+++|+.|.+.+|+.+..+|.++.+
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p---~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYP---PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCC---CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred hhhccCCCCCEEECcCCcchhhhH---HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 358899999999999765454442 22347899999999987665544444578999999999999999999999999
Q ss_pred CCCCCEEEEcC
Q 038559 90 VATLKQLQILP 100 (137)
Q Consensus 90 l~sL~~L~i~~ 100 (137)
+++|+.+.+..
T Consensus 300 L~~L~~l~l~~ 310 (328)
T 4fcg_A 300 LPANCIILVPP 310 (328)
T ss_dssp SCTTCEEECCG
T ss_pred ccCceEEeCCH
Confidence 99999998753
No 5
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.51 E-value=1.9e-07 Score=65.62 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=37.2
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccC
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQF 89 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~ 89 (137)
+.++.+++|++|.+.++ .+..+ .....+++|++|++.+..+.......-+.|++|+.|.+.+|.-....|..+..
T Consensus 60 ~~l~~l~~L~~L~l~~n-~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~ 134 (197)
T 4ezg_A 60 TGIEYAHNIKDLTINNI-HATNY----NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134 (197)
T ss_dssp TTGGGCTTCSEEEEESC-CCSCC----GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred HHHhcCCCCCEEEccCC-CCCcc----hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence 34566666666666644 22222 11224555555555553222110111133444444444443322223333444
Q ss_pred CCCCCEEEEcCC
Q 038559 90 VATLKQLQILPL 101 (137)
Q Consensus 90 l~sL~~L~i~~~ 101 (137)
+++|++|++++|
T Consensus 135 l~~L~~L~L~~n 146 (197)
T 4ezg_A 135 LPKVNSIDLSYN 146 (197)
T ss_dssp CSSCCEEECCSC
T ss_pred CCCCCEEEccCC
Confidence 444444444444
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.48 E-value=1.1e-06 Score=63.81 Aligned_cols=15 Identities=27% Similarity=0.155 Sum_probs=8.9
Q ss_pred cccCCCccceeeecc
Q 038559 11 VIQLLPNLKTLTLWL 25 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~ 25 (137)
.++++++|++|.|.+
T Consensus 54 ~~~~l~~L~~L~L~~ 68 (251)
T 3m19_A 54 TFRGLTKLTWLNLDY 68 (251)
T ss_dssp TTTTCTTCCEEECTT
T ss_pred HhcCcccCCEEECCC
Confidence 455666666666653
No 7
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.45 E-value=5.7e-07 Score=63.09 Aligned_cols=92 Identities=18% Similarity=0.170 Sum_probs=62.7
Q ss_pred CccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccc
Q 038559 7 NSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLED 86 (137)
Q Consensus 7 ~~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~g 86 (137)
.+++.++.+++|++|.|.++. +.... ......+++|+.|++.++.........-+.+++|+.|.+.+|..+..+| .
T Consensus 79 ~~~~~l~~l~~L~~L~l~~n~-l~~~~--~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~ 154 (197)
T 4ezg_A 79 TNYNPISGLSNLERLRIMGKD-VTSDK--IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-P 154 (197)
T ss_dssp SCCGGGTTCTTCCEEEEECTT-CBGGG--SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-G
T ss_pred CcchhhhcCCCCCEEEeECCc-cCccc--ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-h
Confidence 345678888999999997543 22210 1122367889999988754432111122578899999998887677777 5
Q ss_pred ccCCCCCCEEEEcCCC
Q 038559 87 LQFVATLKQLQILPLL 102 (137)
Q Consensus 87 l~~l~sL~~L~i~~~~ 102 (137)
+.++++|++|++++|.
T Consensus 155 l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 155 LKTLPELKSLNIQFDG 170 (197)
T ss_dssp GGGCSSCCEEECTTBC
T ss_pred hcCCCCCCEEECCCCC
Confidence 7888899999988875
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.44 E-value=2e-06 Score=60.58 Aligned_cols=87 Identities=22% Similarity=0.217 Sum_probs=41.4
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccc-ccC
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLED-LQF 89 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~g-l~~ 89 (137)
.++.+++|++|+|.+.. +..++...+ ..+++|++|++.+..+.......-+.+++|+.|.+.++ ++..+|.. +.+
T Consensus 47 ~~~~l~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 122 (208)
T 2o6s_A 47 VFDELTSLTQLYLGGNK-LQSLPNGVF--NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDK 122 (208)
T ss_dssp TTTTCTTCSEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred hhcccccCcEEECCCCc-cCccChhhc--CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhcc
Confidence 35666667777665432 333311111 24566666666654332211001134556666666544 24444432 455
Q ss_pred CCCCCEEEEcCC
Q 038559 90 VATLKQLQILPL 101 (137)
Q Consensus 90 l~sL~~L~i~~~ 101 (137)
+++|++|+++++
T Consensus 123 l~~L~~L~l~~N 134 (208)
T 2o6s_A 123 LTQLKDLRLYQN 134 (208)
T ss_dssp CTTCCEEECCSS
T ss_pred CCcCCEEECCCC
Confidence 556666665554
No 9
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.43 E-value=8.5e-07 Score=61.02 Aligned_cols=89 Identities=20% Similarity=0.210 Sum_probs=57.3
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccc-cc
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLED-LQ 88 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~g-l~ 88 (137)
..++.+++|++|.|.+.. +..++... ...+++|+.|++.+..+........+.+++|+.|.+.++ .+..+|.+ +.
T Consensus 46 ~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 121 (177)
T 2o6r_A 46 GVFDKLTQLTKLSLSQNQ-IQSLPDGV--FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFD 121 (177)
T ss_dssp TTTTTCTTCSEEECCSSC-CCCCCTTT--TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred HHhcCcccccEEECCCCc-ceEeChhH--ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhc
Confidence 346777888888887543 44442111 136788888888875444321111256788888888776 46677765 46
Q ss_pred CCCCCCEEEEcCCC
Q 038559 89 FVATLKQLQILPLL 102 (137)
Q Consensus 89 ~l~sL~~L~i~~~~ 102 (137)
.+++|++|++.+++
T Consensus 122 ~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 122 RLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCcccCEEEecCCC
Confidence 78888999888765
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.42 E-value=1.9e-06 Score=63.30 Aligned_cols=17 Identities=29% Similarity=0.175 Sum_probs=10.3
Q ss_pred ccccCCCccceeeeccc
Q 038559 10 LVIQLLPNLKTLTLWLA 26 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~ 26 (137)
+.++.+++|++|.|.++
T Consensus 79 ~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 79 SALKELTNLTYLILTGN 95 (272)
T ss_dssp GGGTTCTTCCEEECTTS
T ss_pred hhhcCCCCCCEEECCCC
Confidence 45566666666666543
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.39 E-value=2.2e-06 Score=62.75 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=18.2
Q ss_pred cCCccceEeeccCccccccccc-ccCCCCCCEEEEcCC
Q 038559 65 ALPSLKYLQLHKCLKLRMLLED-LQFVATLKQLQILPL 101 (137)
Q Consensus 65 ~mp~L~~L~i~~c~~l~~lp~g-l~~l~sL~~L~i~~~ 101 (137)
.+++|+.|.+.++ .+..+|.+ +..+++|++|+++++
T Consensus 131 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 131 SLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC
Confidence 4555555555544 24444433 445555566655544
No 12
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.39 E-value=1.9e-06 Score=61.59 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=8.6
Q ss_pred cccCCCccceeeecc
Q 038559 11 VIQLLPNLKTLTLWL 25 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~ 25 (137)
.++.+++|++|.|.+
T Consensus 51 ~~~~l~~L~~L~Ls~ 65 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSN 65 (220)
T ss_dssp SSTTCTTCCEEECCS
T ss_pred HhhCCCCCCEEECCC
Confidence 345566666666653
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.34 E-value=1.5e-06 Score=62.12 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=35.5
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccc-cccccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRML-LEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~l-p~gl~~l~sL~~L~i~~~~ 102 (137)
.+++|++|++.+..+.......-+.+++|+.|.+.++ ++..+ |..+..+++|+.|++.+++
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 4555666666554333221111245677777777664 35444 5567778888888887665
No 14
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.33 E-value=1.9e-06 Score=60.53 Aligned_cols=89 Identities=19% Similarity=0.198 Sum_probs=61.4
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccc-cc
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLED-LQ 88 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~g-l~ 88 (137)
..++.+++|++|+|.+.. +..++.+.+ ..+++|++|++.+..+.......-+.+++|+.|.+.+. .+..+|.+ +.
T Consensus 48 ~~~~~l~~L~~L~Ls~N~-i~~i~~~~f--~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~ 123 (193)
T 2wfh_A 48 KELSNYKHLTLIDLSNNR-ISTLSNQSF--SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFN 123 (193)
T ss_dssp GGGGGCTTCCEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTT
T ss_pred HHhhcccCCCEEECCCCc-CCEeCHhHc--cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhh
Confidence 467788888888887543 444421122 36788999999886544322112356899999999875 47777764 77
Q ss_pred CCCCCCEEEEcCCC
Q 038559 89 FVATLKQLQILPLL 102 (137)
Q Consensus 89 ~l~sL~~L~i~~~~ 102 (137)
.+++|+.|++.+++
T Consensus 124 ~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 124 DLSALSHLAIGANP 137 (193)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCccccEEEeCCCC
Confidence 89999999998765
No 15
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.32 E-value=2.7e-06 Score=60.84 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=57.7
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccc-cccccC
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRML-LEDLQF 89 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~l-p~gl~~ 89 (137)
.++.+++|++|.|.+.. +..++... ...+++|++|++.+..+.......-+.+++|+.|.+.++. +..+ |..+..
T Consensus 52 ~~~~l~~L~~L~L~~N~-i~~i~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 127 (220)
T 2v70_A 52 IFKKLPQLRKINFSNNK-ITDIEEGA--FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIG 127 (220)
T ss_dssp CGGGCTTCCEEECCSSC-CCEECTTT--TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTT
T ss_pred hhccCCCCCEEECCCCc-CCEECHHH--hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCC
Confidence 36778888888887543 44442111 2367888888888755443211113568888888887764 5554 567788
Q ss_pred CCCCCEEEEcCCC
Q 038559 90 VATLKQLQILPLL 102 (137)
Q Consensus 90 l~sL~~L~i~~~~ 102 (137)
+++|+.|+++++.
T Consensus 128 l~~L~~L~L~~N~ 140 (220)
T 2v70_A 128 LSSVRLLSLYDNQ 140 (220)
T ss_dssp CTTCSEEECTTSC
T ss_pred CccCCEEECCCCc
Confidence 8899999988764
No 16
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.31 E-value=2.6e-06 Score=59.62 Aligned_cols=88 Identities=18% Similarity=0.186 Sum_probs=61.0
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccc-ccccccC
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRM-LLEDLQF 89 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~-lp~gl~~ 89 (137)
.++.+++|++|+|.+.. +..+.++. .+.+++|++|++.+..+.......-+.+++|+.|.+.+.. +.. .|..+..
T Consensus 49 ~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 124 (192)
T 1w8a_A 49 LFGRLPHLVKLELKRNQ-LTGIEPNA--FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEH 124 (192)
T ss_dssp SGGGCTTCCEEECCSSC-CCCBCTTT--TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTT
T ss_pred ccccCCCCCEEECCCCC-CCCcCHhH--cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhc
Confidence 37788999999997543 33331111 2367889999998865543322123568999999998764 544 4677888
Q ss_pred CCCCCEEEEcCCC
Q 038559 90 VATLKQLQILPLL 102 (137)
Q Consensus 90 l~sL~~L~i~~~~ 102 (137)
+++|++|++.+++
T Consensus 125 l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 125 LNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECTTCC
T ss_pred CCCCCEEEeCCCC
Confidence 9999999998765
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.31 E-value=4.3e-06 Score=65.03 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=9.4
Q ss_pred cccCCCccceeeeccc
Q 038559 11 VIQLLPNLKTLTLWLA 26 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~ 26 (137)
.++.+++|++|+|.++
T Consensus 294 ~~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQN 309 (455)
T ss_dssp TTTTCTTCCEEECTTS
T ss_pred hcccCCCCCEEECCCC
Confidence 3556666666666543
No 18
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.30 E-value=1.1e-06 Score=59.84 Aligned_cols=85 Identities=22% Similarity=0.217 Sum_probs=56.8
Q ss_pred ccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccc--ccccC
Q 038559 12 IQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLL--EDLQF 89 (137)
Q Consensus 12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp--~gl~~ 89 (137)
++.+++|++|.|.++. +..+ .....+++|+.|++.++.+...+....+.+++|+.|.+.++ ++..+| ..+..
T Consensus 45 ~~~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~ 118 (168)
T 2ell_A 45 TAEFVNLEFLSLINVG-LISV----SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKK 118 (168)
T ss_dssp CGGGGGCCEEEEESSC-CCCC----SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSS
T ss_pred HHhCCCCCEEeCcCCC-CCCh----hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhc
Confidence 4778888888887553 3332 11236788888888875544322222235888888888877 466665 57788
Q ss_pred CCCCCEEEEcCCC
Q 038559 90 VATLKQLQILPLL 102 (137)
Q Consensus 90 l~sL~~L~i~~~~ 102 (137)
+++|+.|++++++
T Consensus 119 l~~L~~L~l~~N~ 131 (168)
T 2ell_A 119 LECLKSLDLFNCE 131 (168)
T ss_dssp CSCCCEEECCSSG
T ss_pred CCCCCEEEeeCCc
Confidence 8889999988875
No 19
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.29 E-value=4.9e-06 Score=60.91 Aligned_cols=60 Identities=25% Similarity=0.263 Sum_probs=28.7
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCCCEEEEcCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPL 101 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~ 101 (137)
.+++|+.|++.+..+.......-+.+++|+.|.+.++. +..+|. .+..+++|++|+++++
T Consensus 131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC
Confidence 34555555555533221110001345666666665542 444443 3455566666666554
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.29 E-value=2e-06 Score=61.57 Aligned_cols=89 Identities=17% Similarity=0.217 Sum_probs=64.8
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-ccc
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQ 88 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~ 88 (137)
..++.|++|++|.|.+.. +..++...+ .++++|+.|++.+..+.......-+.+++|+.|.+.++. +..+|. .+.
T Consensus 74 ~~~~~l~~L~~L~Ls~N~-l~~l~~~~f--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~ 149 (220)
T 2v9t_B 74 DAFQGLRSLNSLVLYGNK-ITELPKSLF--EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFS 149 (220)
T ss_dssp TTTTTCSSCCEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred HHhhCCcCCCEEECCCCc-CCccCHhHc--cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHh
Confidence 567899999999998553 555532222 368999999999865543321223578999999998764 666665 478
Q ss_pred CCCCCCEEEEcCCC
Q 038559 89 FVATLKQLQILPLL 102 (137)
Q Consensus 89 ~l~sL~~L~i~~~~ 102 (137)
.+++|+.|++.+++
T Consensus 150 ~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 150 PLRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCCCCCEEEeCCCC
Confidence 89999999998765
No 21
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.28 E-value=2.7e-06 Score=62.49 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=18.2
Q ss_pred cCCccceEeeccCcccccccc-cccCCCCCCEEEEcCC
Q 038559 65 ALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPL 101 (137)
Q Consensus 65 ~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~ 101 (137)
.+++|+.|.+.++. +..+|. .+.++++|+.|++.++
T Consensus 179 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCC
Confidence 45555555555443 333333 2455566666666554
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.28 E-value=1.8e-06 Score=67.73 Aligned_cols=61 Identities=25% Similarity=0.197 Sum_probs=29.6
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCCCEEEEcCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPL 101 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~ 101 (137)
.+++|++|++.+..+.......-+.+++|+.|.+.+|..+..+|. .+..+++|+.|+++++
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 345555555555333221111123456666666666555555544 2444555555555443
No 23
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.28 E-value=2.9e-06 Score=61.53 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=31.6
Q ss_pred cccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCCCEEEEcCCC
Q 038559 42 FHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPLL 102 (137)
Q Consensus 42 f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~~ 102 (137)
+++|+.|++.+..+.......-+.+++|+.|.+.++ ++..+|. .+..+++|+.|++.+++
T Consensus 130 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 455555555553332211101234666666666654 3444543 45667777777776654
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.27 E-value=3.1e-06 Score=62.25 Aligned_cols=14 Identities=36% Similarity=0.242 Sum_probs=7.5
Q ss_pred cccCCCccceeeec
Q 038559 11 VIQLLPNLKTLTLW 24 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~ 24 (137)
.++.+++|++|.|.
T Consensus 100 ~~~~l~~L~~L~l~ 113 (285)
T 1ozn_A 100 TFHGLGRLHTLHLD 113 (285)
T ss_dssp TTTTCTTCCEEECT
T ss_pred HhcCCcCCCEEECC
Confidence 34555555555554
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.27 E-value=1.8e-06 Score=69.26 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=42.7
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeec-CCcCCccceEeeccCcccccccc-ccc
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRMLLE-DLQ 88 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~lp~-gl~ 88 (137)
.+++|++|++|+|.++. +..++++.| +.+++|++|++.+..+... ... -+.+++|+.|.+.++ ++..+|. .+.
T Consensus 71 ~f~~l~~L~~L~Ls~N~-i~~i~~~~f--~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~ 145 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCE-IQTIEDGAY--QSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVET-NLASLENFPIG 145 (635)
T ss_dssp TTTTCTTCCEEECTTCC-CCEECTTTT--TTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEECTTS-CCCCSTTCCCT
T ss_pred HHhCCCCCCEEECCCCc-CCCcChhHh--cCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEECCCC-cCCCCChhhhh
Confidence 45667777777776542 444422122 2456666666666433321 111 134556666665554 2444443 244
Q ss_pred CCCCCCEEEEcCC
Q 038559 89 FVATLKQLQILPL 101 (137)
Q Consensus 89 ~l~sL~~L~i~~~ 101 (137)
++++|++|+++++
T Consensus 146 ~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 146 HLKTLKELNVAHN 158 (635)
T ss_dssp TCTTCCEEECCSS
T ss_pred cCcccCeeccccC
Confidence 5555555555443
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.26 E-value=3.8e-06 Score=65.34 Aligned_cols=91 Identities=16% Similarity=0.187 Sum_probs=45.6
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccc--c
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLED--L 87 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~g--l 87 (137)
..++++++|++|.|.++.....++.+. ...+++|++|++.+..........-+.+++|+.|.+.+|.-...+|.. +
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 125 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPGLVIRNNT--FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTTCEECTTT--TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTT
T ss_pred hHhccCccccEEECcCCcccceECccc--ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccc
Confidence 345666667776666443222221111 124666666766664433221112245666666666665422223333 5
Q ss_pred cCCCCCCEEEEcCCC
Q 038559 88 QFVATLKQLQILPLL 102 (137)
Q Consensus 88 ~~l~sL~~L~i~~~~ 102 (137)
.++++|++|+++++.
T Consensus 126 ~~l~~L~~L~L~~n~ 140 (455)
T 3v47_A 126 KPLTSLEMLVLRDNN 140 (455)
T ss_dssp TTCTTCCEEECCSSB
T ss_pred cCcccCCEEECCCCc
Confidence 566666666666553
No 27
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.25 E-value=3.8e-06 Score=59.05 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=65.9
Q ss_pred CCCCccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccc
Q 038559 4 LSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRML 83 (137)
Q Consensus 4 l~~~~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~l 83 (137)
+..-+...++.+++|++|+|.++. +..++.+. ...+++|+.|++.+..+.......-+.+++|+.|.+.++ .+..+
T Consensus 64 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~ 139 (208)
T 2o6s_A 64 LQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGV--FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSV 139 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT--TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred cCccChhhcCCCCCcCEEECCCCc-CCccCHhH--hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-cccee
Confidence 333333457899999999998553 44442111 247899999999986544321111256899999999876 46677
Q ss_pred ccc-ccCCCCCCEEEEcCCC
Q 038559 84 LED-LQFVATLKQLQILPLL 102 (137)
Q Consensus 84 p~g-l~~l~sL~~L~i~~~~ 102 (137)
|.. +..+++|++|++.+++
T Consensus 140 ~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 140 PDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CTTTTTTCTTCCEEECCSCC
T ss_pred CHHHhccCCCccEEEecCCC
Confidence 764 6889999999998864
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.25 E-value=3.5e-06 Score=64.62 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=50.5
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccC
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQF 89 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~ 89 (137)
+.++.+|+|++|+|.++. +..+.+ .....+++|+.|++.+..+... ....+.+|+|+.|.+.++ ++..+|..+..
T Consensus 242 ~~l~~l~~L~~L~Ls~n~-l~~~~~--~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 316 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNE-LEKIMY--HPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLHVERNQPQ 316 (390)
T ss_dssp GGGGGCTTCSEEECCSSC-CCEEES--GGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSS-CCCCCGGGHHH
T ss_pred HHHcCCCCccEEECCCCc-CCCcCh--hHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCC-cceecCccccc
Confidence 456777888888887543 222211 1123567777777777544432 333356777777777666 35556655555
Q ss_pred CCCCCEEEEcCCC
Q 038559 90 VATLKQLQILPLL 102 (137)
Q Consensus 90 l~sL~~L~i~~~~ 102 (137)
+++|++|++.+++
T Consensus 317 l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 317 FDRLENLYLDHNS 329 (390)
T ss_dssp HTTCSEEECCSSC
T ss_pred cCcCCEEECCCCc
Confidence 5555555555543
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.23 E-value=2.7e-06 Score=66.49 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=26.9
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCCCEEEEcCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPL 101 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~ 101 (137)
.+++|+.|++.+..+.......-+.+++|+.|.+.+|..+..+|. .+..+++|++|+++++
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 345555555554332211111113455556665555554444443 2444445555544443
No 30
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.23 E-value=2.7e-06 Score=62.28 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=25.7
Q ss_pred CcCCccceEeeccCccccc--ccccccCCCCCCEEEEcCCC
Q 038559 64 GALPSLKYLQLHKCLKLRM--LLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 64 g~mp~L~~L~i~~c~~l~~--lp~gl~~l~sL~~L~i~~~~ 102 (137)
+.+++|+.|.+.++. +.. +|..+.++++|++|+++++.
T Consensus 121 ~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 121 GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp TTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCC
Confidence 456677777776553 333 56777778888888887764
No 31
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.23 E-value=7.8e-06 Score=60.08 Aligned_cols=87 Identities=22% Similarity=0.194 Sum_probs=36.4
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEecccc-ccceeeecCCcCCccceEeeccCcccccc-ccccc
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHV-LEEWTEIEEGALPSLKYLQLHKCLKLRML-LEDLQ 88 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~-~~~~~~~~~g~mp~L~~L~i~~c~~l~~l-p~gl~ 88 (137)
.++.+++|++|.|.++. +..+... ....+++|++|++.+.. ........-+.+++|+.|.+.++. +..+ |..+.
T Consensus 51 ~~~~~~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 126 (285)
T 1ozn_A 51 SFRACRNLTILWLHSNV-LARIDAA--AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFR 126 (285)
T ss_dssp TTTTCTTCCEEECCSSC-CCEECTT--TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTT
T ss_pred HcccCCCCCEEECCCCc-cceeCHh--hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhh
Confidence 35556666666665332 2222100 11234555555555432 211100111335555555555443 2222 33344
Q ss_pred CCCCCCEEEEcCC
Q 038559 89 FVATLKQLQILPL 101 (137)
Q Consensus 89 ~l~sL~~L~i~~~ 101 (137)
++++|++|+++++
T Consensus 127 ~l~~L~~L~l~~n 139 (285)
T 1ozn_A 127 GLAALQYLYLQDN 139 (285)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCcCCCEEECCCC
Confidence 4555555555443
No 32
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.22 E-value=3.9e-06 Score=62.43 Aligned_cols=60 Identities=22% Similarity=0.055 Sum_probs=37.7
Q ss_pred CcccccEEEeccccccceeeec-CCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
.+++|+.|++.+..+... ... -..+++|+.|.+.++ .+..+|.++....+|+.|++.++|
T Consensus 146 ~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 146 PTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred cccCCCEEECCCCcCCcc-CHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 455666666665433321 111 134677777777655 366788877777888888887654
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.20 E-value=9.1e-06 Score=64.77 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=25.6
Q ss_pred CcccccEEEecccccc-ceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559 41 GFHKLEILIIAFHVLE-EWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL 101 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~-~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~ 101 (137)
.+++|++|++.++... ..+...-+.+++|+.|.+.+|.-....|..+.++++|++|+++++
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 3455555555543322 111111234455555555444321222444444455555555444
No 34
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.19 E-value=1.7e-06 Score=57.79 Aligned_cols=86 Identities=19% Similarity=0.200 Sum_probs=51.5
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccc--cccc
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLL--EDLQ 88 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp--~gl~ 88 (137)
.++.+++|++|.+.++. +..+ ...+.+++|+.|++.+......+....+.+++|+.|.+.++. +..+| ..+.
T Consensus 37 ~~~~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~ 110 (149)
T 2je0_A 37 LTDEFEELEFLSTINVG-LTSI----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLK 110 (149)
T ss_dssp CCTTCTTCCEEECTTSC-CCCC----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGG
T ss_pred HHhhcCCCcEEECcCCC-CCCc----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHh
Confidence 34677777777776442 3222 112356777777777654433211112347778888777664 55543 5677
Q ss_pred CCCCCCEEEEcCCC
Q 038559 89 FVATLKQLQILPLL 102 (137)
Q Consensus 89 ~l~sL~~L~i~~~~ 102 (137)
++++|++|++++++
T Consensus 111 ~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 111 KLENLKSLDLFNCE 124 (149)
T ss_dssp GCTTCCEEECTTCG
T ss_pred hCCCCCEEeCcCCc
Confidence 77788888887765
No 35
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.18 E-value=5.4e-06 Score=59.52 Aligned_cols=90 Identities=18% Similarity=0.167 Sum_probs=66.2
Q ss_pred ccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-c
Q 038559 8 SALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-D 86 (137)
Q Consensus 8 ~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-g 86 (137)
+...++.+++|++|+|.+.. +..++...+ ..+++|+.|.+.+..+... ....+.+++|+.|.+.++ ++..+|. .
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~--~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N-~l~~~~~~~ 154 (229)
T 3e6j_A 80 PVGVFDSLTQLTVLDLGTNQ-LTVLPSAVF--DRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQN-QLKSIPHGA 154 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSS-CCCCCCTTT
T ss_pred ChhhcccCCCcCEEECCCCc-CCccChhHh--CcchhhCeEeccCCccccc-CcccccCCCCCEEECCCC-cCCccCHHH
Confidence 33457899999999998653 555522122 3789999999998655432 233367999999999876 5777775 5
Q ss_pred ccCCCCCCEEEEcCCC
Q 038559 87 LQFVATLKQLQILPLL 102 (137)
Q Consensus 87 l~~l~sL~~L~i~~~~ 102 (137)
+..+++|+.|++.+++
T Consensus 155 ~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTCTTCCEEECTTSC
T ss_pred HhCCCCCCEEEeeCCC
Confidence 7889999999998765
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.18 E-value=3.8e-06 Score=62.99 Aligned_cols=89 Identities=12% Similarity=0.033 Sum_probs=42.2
Q ss_pred ccccCCCccceeeecccccce-eccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccccc
Q 038559 10 LVIQLLPNLKTLTLWLASKAK-QLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQ 88 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~-~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~ 88 (137)
+.++++++|++|+|.++..+. .++. ..+.+++|++|++.+..+...+...-+.+++|+.|.+.++.-...+|..+.
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPP---AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCG---GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred hhHhCCCCCCeeeCCCCCcccccCCh---hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 456777777777776321122 2211 112456666666665433222111223455555555554432224444455
Q ss_pred CCCCCCEEEEcCC
Q 038559 89 FVATLKQLQILPL 101 (137)
Q Consensus 89 ~l~sL~~L~i~~~ 101 (137)
.+++|++|.++++
T Consensus 147 ~l~~L~~L~L~~N 159 (313)
T 1ogq_A 147 SLPNLVGITFDGN 159 (313)
T ss_dssp GCTTCCEEECCSS
T ss_pred cCCCCCeEECcCC
Confidence 5555555555443
No 37
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.17 E-value=1.6e-06 Score=59.11 Aligned_cols=88 Identities=22% Similarity=0.160 Sum_probs=64.5
Q ss_pred ccccCCCccceeeeccccccee-ccceecCccCcccccEEEeccccccceee-ecCCcCCccceEeeccCcccccccc--
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQ-LEKEFCSVGGFHKLEILIIAFHVLEEWTE-IEEGALPSLKYLQLHKCLKLRMLLE-- 85 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~-l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~-~~~g~mp~L~~L~i~~c~~l~~lp~-- 85 (137)
..++.+++|++|.|.++. +.. + ....+.+++|+.|++.++.+..... ...+.+++|+.|.+.+++ +..+|.
T Consensus 65 ~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~ 139 (168)
T 2ell_A 65 SNLPKLPKLKKLELSENR-IFGGL---DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYR 139 (168)
T ss_dssp SSCCCCSSCCEEEEESCC-CCSCC---CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHH
T ss_pred hhhccCCCCCEEECcCCc-CchHH---HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHH
Confidence 678899999999998654 332 2 1112258999999999865543211 223679999999998875 666665
Q ss_pred --cccCCCCCCEEEEcCCC
Q 038559 86 --DLQFVATLKQLQILPLL 102 (137)
Q Consensus 86 --gl~~l~sL~~L~i~~~~ 102 (137)
.+..+++|+.|++.+|.
T Consensus 140 ~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 140 ESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHHTTCSSCCEETTEETT
T ss_pred HHHHHhCccCcEecCCCCC
Confidence 68889999999998876
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.17 E-value=1.1e-05 Score=59.71 Aligned_cols=88 Identities=23% Similarity=0.254 Sum_probs=40.8
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccc-eeeecCCcCCccceEeeccCcccccc-ccccc
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEE-WTEIEEGALPSLKYLQLHKCLKLRML-LEDLQ 88 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~-~~~~~~g~mp~L~~L~i~~c~~l~~l-p~gl~ 88 (137)
.++.+++|++|.+.++. +..+.. .....+++|++|++.+..... ......+.+++|+.|.+.++. +..+ |..+.
T Consensus 121 ~~~~l~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 196 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTH-TRVAFN--GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN 196 (306)
T ss_dssp TTTTCTTCCEEECTTSC-CEECST--TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT
T ss_pred hhhhccCCCEEECCCCc-CCccch--hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhc
Confidence 34555555555555332 111100 001245666666666543322 111122456666666665553 3333 44555
Q ss_pred CCCCCCEEEEcCCC
Q 038559 89 FVATLKQLQILPLL 102 (137)
Q Consensus 89 ~l~sL~~L~i~~~~ 102 (137)
++++|++|+++++.
T Consensus 197 ~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 197 SLSSLQVLNMSHNN 210 (306)
T ss_dssp TCTTCCEEECTTSC
T ss_pred CCCCCCEEECCCCc
Confidence 56666666665543
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.14 E-value=4.8e-06 Score=67.12 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=35.9
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccc-cccccccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLR-MLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~-~lp~gl~~l~sL~~L~i~~~~ 102 (137)
.+++|++|++.++.+.......-+.+++|+.|.+.++.-.. .+|..+.++++|++|+++++.
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 45555555555543322111223556777777776654222 467777788888888887764
No 40
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.13 E-value=4.1e-06 Score=69.96 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=18.4
Q ss_pred cCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559 65 ALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL 101 (137)
Q Consensus 65 ~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~ 101 (137)
.+++|+.|.+.+|.-...+|..+..+++|+.|++++|
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence 4455555555544433344555555555555555544
No 41
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.13 E-value=7.6e-06 Score=59.86 Aligned_cols=88 Identities=22% Similarity=0.209 Sum_probs=54.4
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccC
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQF 89 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~ 89 (137)
.++++++|++|.|.++. +..++... ...+++|++|++.+..+.......-+.+++|+.|.+.++. +..++. .+.+
T Consensus 47 ~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 122 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCE-IQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGH 122 (276)
T ss_dssp TTTTCTTCSEEECTTCC-CCEECTTT--TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTT
T ss_pred HhccccCCcEEECCCCc-CCccCHHH--ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhccc
Confidence 56677788888877543 33332111 2356788888887754433211122567888888887664 444443 5778
Q ss_pred CCCCCEEEEcCCC
Q 038559 90 VATLKQLQILPLL 102 (137)
Q Consensus 90 l~sL~~L~i~~~~ 102 (137)
+++|++|+++++.
T Consensus 123 l~~L~~L~l~~n~ 135 (276)
T 2z62_A 123 LKTLKELNVAHNL 135 (276)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEECcCCc
Confidence 8888888887654
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.11 E-value=4.4e-06 Score=62.64 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=54.8
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccC
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQF 89 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~ 89 (137)
..++++++|++|+|.++.-...++ .....+++|++|++.+..+...+....+.+++|+.|.+.++.-...+|..+..
T Consensus 95 ~~l~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 95 PAIAKLTQLHYLYITHTNVSGAIP---DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp GGGGGCTTCSEEEEEEECCEEECC---GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred hhHhcCCCCCEEECcCCeeCCcCC---HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh
Confidence 457889999999997543222331 11235778888888775433222222356777888877766533366766666
Q ss_pred CC-CCCEEEEcCC
Q 038559 90 VA-TLKQLQILPL 101 (137)
Q Consensus 90 l~-sL~~L~i~~~ 101 (137)
++ +|++|+++++
T Consensus 172 l~~~L~~L~L~~N 184 (313)
T 1ogq_A 172 FSKLFTSMTISRN 184 (313)
T ss_dssp CCTTCCEEECCSS
T ss_pred hhhcCcEEECcCC
Confidence 66 7777777654
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.11 E-value=7.8e-06 Score=66.38 Aligned_cols=88 Identities=18% Similarity=0.153 Sum_probs=53.8
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccC
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQF 89 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~ 89 (137)
+.++.+|+|++|+|.++. +..+.+ ...+.+++|+.|++.++.+... ....+.+|+|+.|.+.+|. +..+|..+..
T Consensus 248 ~~l~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~ 322 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNE-LEKIMY--HPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNH-LLHVERNQPQ 322 (597)
T ss_dssp GGGGGCTTCSEEECCSSC-CCEEES--GGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSC-CCCCGGGHHH
T ss_pred hhhccCCCCCEEECCCCc-cCCCCH--HHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCC-CCccCccccc
Confidence 457778888888887543 322211 1123677788888877554432 3344567788888777664 5566666555
Q ss_pred CCCCCEEEEcCCC
Q 038559 90 VATLKQLQILPLL 102 (137)
Q Consensus 90 l~sL~~L~i~~~~ 102 (137)
+++|+.|+++++.
T Consensus 323 l~~L~~L~L~~N~ 335 (597)
T 3oja_B 323 FDRLENLYLDHNS 335 (597)
T ss_dssp HTTCSEEECCSSC
T ss_pred CCCCCEEECCCCC
Confidence 6666666665554
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.11 E-value=7.1e-06 Score=62.87 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=26.9
Q ss_pred CcccccEEEeccccccceeeec-CCcCCccceEeeccCcccccc-cccccCCCCCCEEEEcCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRML-LEDLQFVATLKQLQILPL 101 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~l-p~gl~~l~sL~~L~i~~~ 101 (137)
.+++|+.|++.+..+... ... -+.+++|+.|.+.++. +..+ |..+..+++|++|.++++
T Consensus 115 ~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCccCcC-CHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCC
Confidence 345555555554332211 111 1345555555555543 3233 233555556666665554
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.10 E-value=2.1e-05 Score=58.24 Aligned_cols=88 Identities=18% Similarity=0.108 Sum_probs=40.4
Q ss_pred ccccCCCccceeeecccccce-eccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cc
Q 038559 10 LVIQLLPNLKTLTLWLASKAK-QLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DL 87 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~-~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl 87 (137)
..++.+++|++|.|.++.-.. .++ .....+++|+.|++.+..+.......-+.+++|+.|.+.++. +..+|. .+
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 219 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPY 219 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGG
T ss_pred hhcccCcCCCEEECCCCccccccch---hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhc
Confidence 346677777777776442111 111 112245666666666543332211112345555555555443 333322 34
Q ss_pred cCCCCCCEEEEcCC
Q 038559 88 QFVATLKQLQILPL 101 (137)
Q Consensus 88 ~~l~sL~~L~i~~~ 101 (137)
..+++|+.|+++++
T Consensus 220 ~~l~~L~~L~L~~N 233 (306)
T 2z66_A 220 KCLNSLQVLDYSLN 233 (306)
T ss_dssp TTCTTCCEEECTTS
T ss_pred cCcccCCEeECCCC
Confidence 44455555555444
No 46
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.10 E-value=7e-06 Score=58.89 Aligned_cols=86 Identities=23% Similarity=0.254 Sum_probs=39.6
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEecc-ccccceeeec-CCcCCccceEeeccCccccccccccc
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAF-HVLEEWTEIE-EGALPSLKYLQLHKCLKLRMLLEDLQ 88 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~-~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~lp~gl~ 88 (137)
.++.+++|++|+|.++..+..++...+ ..+++|+.|++.+ ..+... ... -+.+++|+.|.+.++. +..+|. +.
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f--~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~ 124 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSF--YNLSKVTHIEIRNTRNLTYI-DPDALKELPLLKFLGIFNTG-LKMFPD-LT 124 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTE--ESCTTCCEEEEEEETTCCEE-CTTSEECCTTCCEEEEEEEC-CCSCCC-CT
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHc--CCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCCEEeCCCCC-Cccccc-cc
Confidence 456677777777765432444421111 2456666666665 322211 110 1235555555555442 333443 33
Q ss_pred CCCCCC---EEEEcCC
Q 038559 89 FVATLK---QLQILPL 101 (137)
Q Consensus 89 ~l~sL~---~L~i~~~ 101 (137)
.+++|+ .|+++++
T Consensus 125 ~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 125 KVYSTDIFFILEITDN 140 (239)
T ss_dssp TCCBCCSEEEEEEESC
T ss_pred cccccccccEEECCCC
Confidence 333333 4444443
No 47
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.10 E-value=7.8e-06 Score=62.45 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=26.5
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccc----cCCCCCCEEEEcCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDL----QFVATLKQLQILPL 101 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl----~~l~sL~~L~i~~~ 101 (137)
.+++|+.|++.+..+.......-+.+++|+.|.+.++ ++..+|..+ ..+++|+.|+++++
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS
T ss_pred CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 3445555555543322111011134556666655543 344555433 34566666665544
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.10 E-value=4.8e-06 Score=63.09 Aligned_cols=87 Identities=22% Similarity=0.244 Sum_probs=38.0
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc--ccc
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE--DLQ 88 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~--gl~ 88 (137)
.++++++|++|.|.++. +..++.+. .+.+++|++|++.+..+.......-+.+++|+.|.+.++ .+..+|. .+.
T Consensus 71 ~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~ 146 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNG-INTIEEDS--FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFS 146 (353)
T ss_dssp TTTTCTTCCEEECTTSC-CCEECTTT--TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCT
T ss_pred HhccCCCCCEEECCCCc-cCccCHhh--cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhc
Confidence 46667777777776442 33331111 124455555555553322211000133455555555443 2333443 344
Q ss_pred CCCCCCEEEEcCC
Q 038559 89 FVATLKQLQILPL 101 (137)
Q Consensus 89 ~l~sL~~L~i~~~ 101 (137)
++++|++|++.++
T Consensus 147 ~l~~L~~L~l~~n 159 (353)
T 2z80_A 147 HLTKLQILRVGNM 159 (353)
T ss_dssp TCTTCCEEEEEES
T ss_pred cCCCCcEEECCCC
Confidence 4445555544443
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.10 E-value=8.5e-06 Score=68.71 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=22.1
Q ss_pred CcCCccceEeeccCcccccc--cccccCCCCCCEEEEcCCC
Q 038559 64 GALPSLKYLQLHKCLKLRML--LEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 64 g~mp~L~~L~i~~c~~l~~l--p~gl~~l~sL~~L~i~~~~ 102 (137)
+.+++|+.|.+.++. +..+ +..+.++++|++|.+.++.
T Consensus 120 ~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp SSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred cccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc
Confidence 346666666666553 2222 2356677777777776653
No 50
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.09 E-value=6.8e-06 Score=58.95 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=42.2
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccc---eEeeccCccccccccc-
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLK---YLQLHKCLKLRMLLED- 86 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~---~L~i~~c~~l~~lp~g- 86 (137)
.++.+++|++|.|.++..+..++.+.+ ..+++|+.|++.+..+... . .-+.+++|+ .|.+.+++.+..+|.+
T Consensus 75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f--~~l~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~~L~l~~N~~l~~i~~~~ 150 (239)
T 2xwt_C 75 SFYNLSKVTHIEIRNTRNLTYIDPDAL--KELPLLKFLGIFNTGLKMF-P-DLTKVYSTDIFFILEITDNPYMTSIPVNA 150 (239)
T ss_dssp TEESCTTCCEEEEEEETTCCEECTTSE--ECCTTCCEEEEEEECCCSC-C-CCTTCCBCCSEEEEEEESCTTCCEECTTT
T ss_pred HcCCCcCCcEEECCCCCCeeEcCHHHh--CCCCCCCEEeCCCCCCccc-c-ccccccccccccEEECCCCcchhhcCccc
Confidence 345566666666654333444321111 2455666666655433221 1 123445555 6666555455555542
Q ss_pred ccCCCCCC-EEEEcCC
Q 038559 87 LQFVATLK-QLQILPL 101 (137)
Q Consensus 87 l~~l~sL~-~L~i~~~ 101 (137)
+.++++|+ +|++.++
T Consensus 151 ~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNN 166 (239)
T ss_dssp TTTTBSSEEEEECCSC
T ss_pred ccchhcceeEEEcCCC
Confidence 45556666 6665554
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.09 E-value=8e-06 Score=65.10 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=59.1
Q ss_pred cccCCCccceeeecccccc-eeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-ccc
Q 038559 11 VIQLLPNLKTLTLWLASKA-KQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQ 88 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~-~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~ 88 (137)
.++.+++|++|.|.++.-. ..+ ....+.+++|+.|++.++.+.......-+.+++|+.|.+.+|. +..+|. .+.
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~---p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 515 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFL---PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFD 515 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred hhhcCCcCcEEECcCCcCccccc---hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhh
Confidence 3455666666666543311 122 1122468999999999876554322233679999999999874 666654 678
Q ss_pred CCCCCCEEEEcCCC
Q 038559 89 FVATLKQLQILPLL 102 (137)
Q Consensus 89 ~l~sL~~L~i~~~~ 102 (137)
++++|++|++.+++
T Consensus 516 ~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 516 RLTSLQKIWLHTNP 529 (570)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccCCcEEEecCCc
Confidence 99999999998865
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.09 E-value=1.3e-05 Score=62.69 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=10.5
Q ss_pred ccccCCCccceeeeccc
Q 038559 10 LVIQLLPNLKTLTLWLA 26 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~ 26 (137)
..++.+++|++|.|.++
T Consensus 141 ~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNN 157 (452)
T ss_dssp TTSSSCTTCCEEECCSC
T ss_pred hhhcccCCCCEEECCCC
Confidence 34566777777777643
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.09 E-value=7.4e-06 Score=65.67 Aligned_cols=88 Identities=19% Similarity=0.174 Sum_probs=57.7
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccc-cccccC
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRML-LEDLQF 89 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~l-p~gl~~ 89 (137)
.++.+++|++|+|+++. +..++++.+ +++++|++|++.+..+.......-+.+++|+.|.+.+.. +..+ |..+.+
T Consensus 489 ~~~~l~~L~~L~Ls~N~-L~~l~~~~f--~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~ 564 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQCQ-LEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQH 564 (635)
T ss_dssp CCTTCTTCCEEECTTSC-CCEECTTTT--TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC-CCBCCSSCTTC
T ss_pred hhhhccccCEEECCCCc-cCCcChHHH--cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc-CCCCCHHHHHh
Confidence 46677788888887553 444422122 367888888888765443322223568899999887764 5544 456777
Q ss_pred C-CCCCEEEEcCCC
Q 038559 90 V-ATLKQLQILPLL 102 (137)
Q Consensus 90 l-~sL~~L~i~~~~ 102 (137)
+ ++|+.|++.++|
T Consensus 565 l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 565 FPSSLAFLNLTQND 578 (635)
T ss_dssp CCTTCCEEECTTCC
T ss_pred hhCcCCEEEeeCCC
Confidence 7 689999997654
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.09 E-value=1e-05 Score=63.57 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=15.2
Q ss_pred cCCccceEeeccCcccccc-cccccCCCCCCEEEEcCC
Q 038559 65 ALPSLKYLQLHKCLKLRML-LEDLQFVATLKQLQILPL 101 (137)
Q Consensus 65 ~mp~L~~L~i~~c~~l~~l-p~gl~~l~sL~~L~i~~~ 101 (137)
.+++|+.|.+.++. +..+ |..+..+++|++|++.++
T Consensus 126 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 126 DLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp TCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESC
T ss_pred ccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCC
Confidence 34444444444332 2221 223444555555555444
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.07 E-value=1.6e-05 Score=62.05 Aligned_cols=16 Identities=31% Similarity=0.242 Sum_probs=10.2
Q ss_pred cccCCCccceeeeccc
Q 038559 11 VIQLLPNLKTLTLWLA 26 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~ 26 (137)
.++.+++|++|.|.+.
T Consensus 131 ~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNN 146 (440)
T ss_dssp TSCSCSSCCEEECCSC
T ss_pred HhhccccCceeeCCCC
Confidence 4566777777777643
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.07 E-value=8e-06 Score=66.30 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=30.2
Q ss_pred CcccccEEEeccccccceeeec-CCcCCccceEeeccCcccccc-cccccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRML-LEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~l-p~gl~~l~sL~~L~i~~~~ 102 (137)
.+++|+.|++.++.+... ... -+.+++|+.|.+.++. +..+ |..+.++++|+.|+++++.
T Consensus 121 ~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 121 NVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCCCEEEeeCCCCCCC-CHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCC
Confidence 455566666655433321 111 1445666666665553 3333 3345566666666665543
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.07 E-value=9.1e-06 Score=65.49 Aligned_cols=36 Identities=19% Similarity=0.045 Sum_probs=17.0
Q ss_pred cCCccceEeeccCcccccccccccCCC-CCCEEEEcCC
Q 038559 65 ALPSLKYLQLHKCLKLRMLLEDLQFVA-TLKQLQILPL 101 (137)
Q Consensus 65 ~mp~L~~L~i~~c~~l~~lp~gl~~l~-sL~~L~i~~~ 101 (137)
.+++|+.|.+.++. +..+|.++..++ +|+.|++.++
T Consensus 519 ~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 519 QLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp TCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred CCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence 34445555544442 444554444443 3555555443
No 58
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.06 E-value=2.3e-05 Score=61.53 Aligned_cols=61 Identities=25% Similarity=0.213 Sum_probs=35.6
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~~ 102 (137)
.+++|+.|.+.+..+.......-+.+++|+.|.+.++. +..+|. .+.++++|+.|.+.++.
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCC
T ss_pred ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCc
Confidence 45666666666543322111122467888888887763 555553 45666777777776654
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.04 E-value=7.4e-06 Score=62.03 Aligned_cols=90 Identities=17% Similarity=0.112 Sum_probs=56.2
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceee-ecCCcCCccceEeeccCccccccc-ccc
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTE-IEEGALPSLKYLQLHKCLKLRMLL-EDL 87 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~-~~~g~mp~L~~L~i~~c~~l~~lp-~gl 87 (137)
..++.+++|++|+|.++. +..++.+. .+.+++|++|++.+..+..... ..-+.+++|+.|.+.++..+..++ ..+
T Consensus 94 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~--~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 170 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNY-LSNLSSSW--FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170 (353)
T ss_dssp TTTTTCTTCCEEECCSSC-CSSCCHHH--HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred hhcCCCCCCCEEECCCCc-CCcCCHhH--hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence 346778888888887543 33342111 2357788888887754432211 122567888888888776565554 467
Q ss_pred cCCCCCCEEEEcCCC
Q 038559 88 QFVATLKQLQILPLL 102 (137)
Q Consensus 88 ~~l~sL~~L~i~~~~ 102 (137)
..+++|++|+++++.
T Consensus 171 ~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 171 AGLTFLEELEIDASD 185 (353)
T ss_dssp TTCCEEEEEEEEETT
T ss_pred cCCCCCCEEECCCCC
Confidence 777888888887764
No 60
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.04 E-value=1e-05 Score=55.94 Aligned_cols=82 Identities=16% Similarity=0.143 Sum_probs=60.1
Q ss_pred CccceeeecccccceeccceecCccCcccccEEEeccccccceeeec-CCcCCccceEeeccCccccccccc-ccCCCCC
Q 038559 16 PNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRMLLED-LQFVATL 93 (137)
Q Consensus 16 p~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~lp~g-l~~l~sL 93 (137)
++|++|.|.+.. +..++++. .+.+++|+.|++.+..+... ... -+.+++|+.|.+.+. ++..+|.+ +.++++|
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~~--~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPGV--FDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTTT--TTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCcEEEeCCCC-ccccCHHH--hcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCC-ccceeCHHHhccccCC
Confidence 789999998553 44442112 23789999999998655432 222 257899999999875 57888876 8889999
Q ss_pred CEEEEcCCC
Q 038559 94 KQLQILPLL 102 (137)
Q Consensus 94 ~~L~i~~~~ 102 (137)
+.|++.+++
T Consensus 108 ~~L~L~~N~ 116 (174)
T 2r9u_A 108 THIYLYNNP 116 (174)
T ss_dssp SEEECCSSC
T ss_pred CEEEeCCCC
Confidence 999998875
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.04 E-value=1.3e-05 Score=63.43 Aligned_cols=87 Identities=18% Similarity=0.083 Sum_probs=60.7
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccc-ccccccc
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLR-MLLEDLQ 88 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~-~lp~gl~ 88 (137)
..++.+++|++|+|.++. +..+.++. .+.+++|++|++.+..+.. +.. ..+++|+.|.+.++.-.. .+|..+.
T Consensus 39 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~--~~~l~~L~~L~Ls~N~l~~-lp~--~~l~~L~~L~L~~N~l~~~~~p~~~~ 112 (520)
T 2z7x_B 39 SDILSLSKLRILIISHNR-IQYLDISV--FKFNQELEYLDLSHNKLVK-ISC--HPTVNLKHLDLSFNAFDALPICKEFG 112 (520)
T ss_dssp HHHTTCTTCCEEECCSSC-CCEEEGGG--GTTCTTCCEEECCSSCCCE-EEC--CCCCCCSEEECCSSCCSSCCCCGGGG
T ss_pred hhccccccccEEecCCCc-cCCcChHH--hhcccCCCEEecCCCceee-cCc--cccCCccEEeccCCccccccchhhhc
Confidence 457888999999998654 43331112 2368899999998865553 222 278999999998875222 3677888
Q ss_pred CCCCCCEEEEcCCC
Q 038559 89 FVATLKQLQILPLL 102 (137)
Q Consensus 89 ~l~sL~~L~i~~~~ 102 (137)
++++|++|+++++.
T Consensus 113 ~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 113 NMSQLKFLGLSTTH 126 (520)
T ss_dssp GCTTCCEEEEEESS
T ss_pred cCCcceEEEecCcc
Confidence 88999999888765
No 62
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.03 E-value=1.3e-05 Score=61.11 Aligned_cols=87 Identities=20% Similarity=0.138 Sum_probs=54.5
Q ss_pred cc-CCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccc-cccccC
Q 038559 12 IQ-LLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRML-LEDLQF 89 (137)
Q Consensus 12 L~-~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~l-p~gl~~ 89 (137)
+. .+++|++|.|.+.. +..++.+. ...+++|+.|++.+..+.......-+.+++|+.|.+.++. +..+ |..+..
T Consensus 59 ~~~~l~~L~~L~L~~N~-i~~i~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~ 134 (361)
T 2xot_A 59 TPTRLTNLHSLLLSHNH-LNFISSEA--FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFED 134 (361)
T ss_dssp SSSCCTTCCEEECCSSC-CCEECTTT--TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTT
T ss_pred hhhcccccCEEECCCCc-CCccChhh--ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCC
Confidence 44 67788888886443 44442111 2367788888888755443211112467888888887764 4444 556778
Q ss_pred CCCCCEEEEcCCC
Q 038559 90 VATLKQLQILPLL 102 (137)
Q Consensus 90 l~sL~~L~i~~~~ 102 (137)
+++|++|+++++.
T Consensus 135 l~~L~~L~L~~N~ 147 (361)
T 2xot_A 135 MAQLQKLYLSQNQ 147 (361)
T ss_dssp CTTCCEEECCSSC
T ss_pred cccCCEEECCCCc
Confidence 8888888887764
No 63
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.03 E-value=2e-05 Score=59.46 Aligned_cols=91 Identities=20% Similarity=0.012 Sum_probs=63.8
Q ss_pred cccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccccc
Q 038559 9 ALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQ 88 (137)
Q Consensus 9 l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~ 88 (137)
++.|+.+++|+.|.|.+...+..++++.+ +.+++|+.|+|.+..+.......-+.|++|+.|.+.+. ++..+|.++-
T Consensus 24 ip~l~~~~~L~~L~l~~~n~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~ 100 (347)
T 2ifg_A 24 LHHLPGAENLTELYIENQQHLQHLELRDL--RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV 100 (347)
T ss_dssp TTTSCSCSCCSEEECCSCSSCCEECGGGS--CSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred cCCCCCCCCeeEEEccCCCCCCCcChhHh--ccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHc
Confidence 34488899999999985344666632223 37899999999986554322111256999999999764 5888887654
Q ss_pred CCCCCCEEEEcCCC
Q 038559 89 FVATLKQLQILPLL 102 (137)
Q Consensus 89 ~l~sL~~L~i~~~~ 102 (137)
...+|+.|.+.+++
T Consensus 101 ~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 101 QGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCCEEECCSSC
T ss_pred ccCCceEEEeeCCC
Confidence 44459999997654
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.02 E-value=4.5e-05 Score=56.62 Aligned_cols=85 Identities=21% Similarity=0.206 Sum_probs=41.4
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-ccc
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQ 88 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~ 88 (137)
..++.+++|++|.|.+.. +..++ ..+.+++|++|++.+..+... ....+.+++|+.|.+.++ ++..+|. .+.
T Consensus 49 ~~~~~l~~L~~L~L~~n~-l~~~~----~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~ 121 (290)
T 1p9a_G 49 ATLMPYTRLTQLNLDRAE-LTKLQ----VDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFN-RLTSLPLGALR 121 (290)
T ss_dssp GGGTTCTTCCEEECTTSC-CCEEE----CCSCCTTCCEEECCSSCCSSC-CCCTTTCTTCCEEECCSS-CCCCCCSSTTT
T ss_pred HHhhcCCCCCEEECCCCc-cCccc----CCCCCCcCCEEECCCCcCCcC-chhhccCCCCCEEECCCC-cCcccCHHHHc
Confidence 346667777777776432 33331 113556666666665433221 122234555555555443 2444442 344
Q ss_pred CCCCCCEEEEcCC
Q 038559 89 FVATLKQLQILPL 101 (137)
Q Consensus 89 ~l~sL~~L~i~~~ 101 (137)
++++|++|+++++
T Consensus 122 ~l~~L~~L~L~~N 134 (290)
T 1p9a_G 122 GLGELQELYLKGN 134 (290)
T ss_dssp TCTTCCEEECTTS
T ss_pred CCCCCCEEECCCC
Confidence 5555555555544
No 65
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.02 E-value=7.8e-06 Score=65.05 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=10.0
Q ss_pred cccCCCccceeeeccc
Q 038559 11 VIQLLPNLKTLTLWLA 26 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~ 26 (137)
.++.+++|++|.|.++
T Consensus 45 ~~~~l~~L~~L~Ls~n 60 (549)
T 2z81_A 45 DLRACANLQVLILKSS 60 (549)
T ss_dssp TTSSCTTCCEEECTTS
T ss_pred hhhcCCcccEEECCCC
Confidence 4566666777766643
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.01 E-value=1.5e-05 Score=59.64 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=36.3
Q ss_pred cccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 42 FHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 42 f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
+++|++|++.+..+... ....+.+++|+.|.+.++ .+..+|..+..+++|+.|++++++
T Consensus 190 l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred cccCCEEECCCCcCCcc-hhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 45566666555433321 122345677777777665 456677777777788888887765
No 67
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.00 E-value=6.1e-06 Score=68.92 Aligned_cols=85 Identities=20% Similarity=0.157 Sum_probs=58.8
Q ss_pred ccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCC
Q 038559 12 IQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVA 91 (137)
Q Consensus 12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~ 91 (137)
+..|++|++|.|.++. +..++. ..+.+++|+.|+|.+..+.. +....+.|++|+.|.+.++ .+..+|.++.+++
T Consensus 243 ~~~l~~L~~L~Ls~N~-l~~lp~---~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~ 316 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNS-LTELPA---EIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLC 316 (727)
T ss_dssp GGGCCSCSCCBCTTSC-CSCCCG---GGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCT
T ss_pred hcCCCCCCEEEeeCCc-CcccCh---hhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCC-CCCccChhhhcCC
Confidence 4456667777666432 334421 12467888888888865442 2233467889999999876 5778898899999
Q ss_pred CCCEEEEcCCC
Q 038559 92 TLKQLQILPLL 102 (137)
Q Consensus 92 sL~~L~i~~~~ 102 (137)
+|+.|.+++++
T Consensus 317 ~L~~L~L~~N~ 327 (727)
T 4b8c_D 317 NLQFLGVEGNP 327 (727)
T ss_dssp TCCCEECTTSC
T ss_pred CccEEeCCCCc
Confidence 99999998876
No 68
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.00 E-value=9.7e-06 Score=65.96 Aligned_cols=87 Identities=21% Similarity=0.209 Sum_probs=67.1
Q ss_pred cccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccc--ccc
Q 038559 9 ALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRML--LED 86 (137)
Q Consensus 9 l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~l--p~g 86 (137)
++.++.|++|+.|.|.++. +..+|. ..+.+++|+.|++.+..+.. +. ..+.|++|+.|.+.++ ++..+ |..
T Consensus 456 lp~~~~l~~L~~L~Ls~N~-l~~lp~---~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~ 528 (567)
T 1dce_A 456 LCHLEQLLLVTHLDLSHNR-LRALPP---ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN-RLQQSAAIQP 528 (567)
T ss_dssp CCCGGGGTTCCEEECCSSC-CCCCCG---GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS-CCCSSSTTGG
T ss_pred CcCccccccCcEeecCccc-ccccch---hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC-CCCCCCCcHH
Confidence 4558899999999998553 445532 23478999999999865544 22 4578999999999876 47776 888
Q ss_pred ccCCCCCCEEEEcCCC
Q 038559 87 LQFVATLKQLQILPLL 102 (137)
Q Consensus 87 l~~l~sL~~L~i~~~~ 102 (137)
+..+++|+.|.+++++
T Consensus 529 l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 529 LVSCPRLVLLNLQGNS 544 (567)
T ss_dssp GGGCTTCCEEECTTSG
T ss_pred HhcCCCCCEEEecCCc
Confidence 9999999999998876
No 69
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.00 E-value=9.5e-06 Score=55.74 Aligned_cols=86 Identities=19% Similarity=0.109 Sum_probs=50.1
Q ss_pred ccccCCC-ccceeeecccccceeccceecCccCcccccEEEeccccccceeeecC-CcCCccceEeeccCcccccccc--
Q 038559 10 LVIQLLP-NLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEE-GALPSLKYLQLHKCLKLRMLLE-- 85 (137)
Q Consensus 10 ~~L~~Lp-~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~-g~mp~L~~L~i~~c~~l~~lp~-- 85 (137)
+.+..+. +|++|++.++. +..+ .....+++|++|++.+..+... .... +.+|+|+.|.+.++. +..+|.
T Consensus 35 ~~~~~~~~~L~~L~Ls~N~-l~~~----~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~ 107 (176)
T 1a9n_A 35 ENLGATLDQFDAIDFSDNE-IRKL----DGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNS-LVELGDLD 107 (176)
T ss_dssp CCGGGGTTCCSEEECCSSC-CCEE----CCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEECCSCC-CCCGGGGG
T ss_pred HHhhhcCCCCCEEECCCCC-CCcc----cccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEECCCCc-CCcchhhH
Confidence 3344444 77777776442 3332 1123567777777776544322 1111 457777777776653 566665
Q ss_pred cccCCCCCCEEEEcCCC
Q 038559 86 DLQFVATLKQLQILPLL 102 (137)
Q Consensus 86 gl~~l~sL~~L~i~~~~ 102 (137)
.+.++++|+.|.+.+++
T Consensus 108 ~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 108 PLASLKSLTYLCILRNP 124 (176)
T ss_dssp GGGGCTTCCEEECCSSG
T ss_pred hhhcCCCCCEEEecCCC
Confidence 66677778888877765
No 70
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.99 E-value=1.4e-05 Score=54.88 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=60.1
Q ss_pred CCccceeeecccccceeccceecCccCcccccEEEeccccccceeeec-CCcCCccceEeeccCccccccccc-ccCCCC
Q 038559 15 LPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRMLLED-LQFVAT 92 (137)
Q Consensus 15 Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~lp~g-l~~l~s 92 (137)
.++|++|.|.+.. +..++++.+ ..+++|+.|++.+..+... ... -+.+++|+.|.+.+. ++..+|.+ +.++++
T Consensus 29 ~~~l~~L~L~~N~-i~~~~~~~~--~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 103 (170)
T 3g39_A 29 PTTTQVLYLYDNQ-ITKLEPGVF--DRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKS 103 (170)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTT--TTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred CCCCcEEEcCCCc-CCccChhhh--cCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCC
Confidence 4789999998543 444421122 3789999999998655432 222 257999999999875 57788874 788999
Q ss_pred CCEEEEcCCC
Q 038559 93 LKQLQILPLL 102 (137)
Q Consensus 93 L~~L~i~~~~ 102 (137)
|+.|++.+++
T Consensus 104 L~~L~L~~N~ 113 (170)
T 3g39_A 104 LTHIWLLNNP 113 (170)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEeCCCC
Confidence 9999998865
No 71
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.97 E-value=3.6e-05 Score=61.75 Aligned_cols=88 Identities=20% Similarity=0.178 Sum_probs=61.9
Q ss_pred ccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccc--cc
Q 038559 8 SALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRML--LE 85 (137)
Q Consensus 8 ~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~l--p~ 85 (137)
+-..++.+++|++|.|.++. +..++++.+ +.+++|++|++.+..+.. +....+++|+.|.+.++. +..+ |.
T Consensus 68 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~--~~l~~L~~L~Ls~N~l~~---lp~~~l~~L~~L~Ls~N~-l~~l~~p~ 140 (562)
T 3a79_B 68 RMPDISFLSELRVLRLSHNR-IRSLDFHVF--LFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFND-FDVLPVCK 140 (562)
T ss_dssp CGGGTTTCTTCCEEECCSCC-CCEECTTTT--TTCTTCCEEECTTSCCCE---ECSCCCTTCSEEECCSSC-CSBCCCCG
T ss_pred ChhhhccCCCccEEECCCCC-CCcCCHHHh--CCCCCCCEEECCCCcCCc---cCccccccCCEEECCCCC-ccccCchH
Confidence 33467888999999998553 444421122 367889999998865542 233379999999998775 5544 46
Q ss_pred cccCCCCCCEEEEcCCC
Q 038559 86 DLQFVATLKQLQILPLL 102 (137)
Q Consensus 86 gl~~l~sL~~L~i~~~~ 102 (137)
.+.++++|++|+++++.
T Consensus 141 ~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 141 EFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp GGGGCTTCCEEEEECSB
T ss_pred hhcccCcccEEecCCCc
Confidence 78889999999998764
No 72
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.97 E-value=2.2e-05 Score=63.17 Aligned_cols=14 Identities=43% Similarity=0.266 Sum_probs=7.7
Q ss_pred ccCCCccceeeecc
Q 038559 12 IQLLPNLKTLTLWL 25 (137)
Q Consensus 12 L~~Lp~L~~L~L~~ 25 (137)
++.+++|++|.|.+
T Consensus 421 ~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 421 FQNLHLLKVLNLSH 434 (606)
T ss_dssp TTTCTTCCEEECTT
T ss_pred hhCcccCCEEECCC
Confidence 45555555555553
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.96 E-value=1.3e-05 Score=63.73 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=54.1
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccce-eeecCCcCCccceEeeccCccccccc-ccc
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEW-TEIEEGALPSLKYLQLHKCLKLRMLL-EDL 87 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~-~~~~~g~mp~L~~L~i~~c~~l~~lp-~gl 87 (137)
..++.+++|++|+|.++. +..++.+. .+.+++|++|++.+..+... ....-+.+++|+.|.+.++..+..+| ..+
T Consensus 68 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 144 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNH-LSSLSSSW--FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144 (549)
T ss_dssp TTTTTCTTCCEEECTTSC-CCSCCHHH--HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred hhccccccCCEEECCCCc-cCccCHHH--hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh
Confidence 346777777777776543 33332111 23567777777776543321 01123567778888877776566665 367
Q ss_pred cCCCCCCEEEEcCCC
Q 038559 88 QFVATLKQLQILPLL 102 (137)
Q Consensus 88 ~~l~sL~~L~i~~~~ 102 (137)
.++++|++|++.++.
T Consensus 145 ~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 145 AGLTSLNELEIKALS 159 (549)
T ss_dssp TTCCEEEEEEEEETT
T ss_pred hcccccCeeeccCCc
Confidence 777788888877654
No 74
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.95 E-value=1.5e-05 Score=59.90 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=34.6
Q ss_pred ccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCC
Q 038559 12 IQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVA 91 (137)
Q Consensus 12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~ 91 (137)
++.+++|++|.|.++. +..++ ....+++|++|++.++..... ...+.+++|+.|.+.+| .+..+| .+..++
T Consensus 217 ~~~~~~L~~L~l~~n~-l~~~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~ 287 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNK-ITDLS----PLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSN-QISDIS-VLNNLS 287 (347)
T ss_dssp GGGCTTCCEEECCSSC-CCCCG----GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCCCG-GGGGCT
T ss_pred hhcCCcCCEEEccCCc-cCCCc----chhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCC-ccCCCh-hhcCCC
Confidence 5566666666665442 22221 122445555555554322211 11133444555544444 233332 233444
Q ss_pred CCCEEEEcCC
Q 038559 92 TLKQLQILPL 101 (137)
Q Consensus 92 sL~~L~i~~~ 101 (137)
+|++|++++|
T Consensus 288 ~L~~L~L~~n 297 (347)
T 4fmz_A 288 QLNSLFLNNN 297 (347)
T ss_dssp TCSEEECCSS
T ss_pred CCCEEECcCC
Confidence 4444444444
No 75
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.94 E-value=2.4e-05 Score=63.04 Aligned_cols=37 Identities=19% Similarity=0.119 Sum_probs=20.2
Q ss_pred cCCccceEeeccCcccccc---cccccCCCCCCEEEEcCCC
Q 038559 65 ALPSLKYLQLHKCLKLRML---LEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 65 ~mp~L~~L~i~~c~~l~~l---p~gl~~l~sL~~L~i~~~~ 102 (137)
.+++|+.|.+.++. +..+ |..+.++++|++|+++++.
T Consensus 348 ~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 348 NLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp TCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred ccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCc
Confidence 45555555555443 2222 4456666677777766653
No 76
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.94 E-value=2.6e-05 Score=58.60 Aligned_cols=16 Identities=38% Similarity=0.262 Sum_probs=8.7
Q ss_pred ccccCCCccceeeecc
Q 038559 10 LVIQLLPNLKTLTLWL 25 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~ 25 (137)
+.++.+++|++|.|.+
T Consensus 60 ~~~~~~~~L~~L~l~~ 75 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNG 75 (347)
T ss_dssp TTGGGCTTCCEEECCS
T ss_pred hhhhhcCCccEEEccC
Confidence 3455555666665553
No 77
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.93 E-value=4.6e-06 Score=57.34 Aligned_cols=90 Identities=20% Similarity=0.153 Sum_probs=66.2
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeee-cCCcCCccceEeeccCccccccccc--
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEI-EEGALPSLKYLQLHKCLKLRMLLED-- 86 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~-~~g~mp~L~~L~i~~c~~l~~lp~g-- 86 (137)
+.++.+++|++|.|.++. +..+++..+ ..+++|+.|++.+..+..+..+ ..+.+++|+.|.+.+++ +..+|..
T Consensus 58 ~~l~~l~~L~~L~Ls~N~-l~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~ 133 (176)
T 1a9n_A 58 DGFPLLRRLKTLLVNNNR-ICRIGEGLD--QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRL 133 (176)
T ss_dssp CCCCCCSSCCEEECCSSC-CCEECSCHH--HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHH
T ss_pred cccccCCCCCEEECCCCc-ccccCcchh--hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHH
Confidence 678899999999998654 455521111 4789999999998655432111 23579999999998876 5567764
Q ss_pred --ccCCCCCCEEEEcCCCH
Q 038559 87 --LQFVATLKQLQILPLLD 103 (137)
Q Consensus 87 --l~~l~sL~~L~i~~~~~ 103 (137)
+..+++|+.|++.++..
T Consensus 134 ~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 134 YVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHHHCTTCSEETTEECCH
T ss_pred HHHHHCCccceeCCCcCCH
Confidence 78899999999998873
No 78
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.93 E-value=1.8e-05 Score=64.60 Aligned_cols=61 Identities=13% Similarity=-0.042 Sum_probs=32.6
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL 101 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~ 101 (137)
.+++|++|++.+..+.......-+.+++|+.|.+.++.-....|..+.++++|++|++.++
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 4556666666654332211111245667777777665422333445666777777776655
No 79
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.89 E-value=8.8e-05 Score=50.71 Aligned_cols=84 Identities=19% Similarity=0.181 Sum_probs=59.6
Q ss_pred CCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeec-CCcCCccceEeeccCccccccccc-ccCCC
Q 038559 14 LLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRMLLED-LQFVA 91 (137)
Q Consensus 14 ~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~lp~g-l~~l~ 91 (137)
..++|+.|.|.+.. +..++.+.+ +.+++|++|++.+..+... ... -+.+++|+.|.+.++ ++..+|.. +..++
T Consensus 26 ~~~~l~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~ 100 (177)
T 2o6r_A 26 IPSSATRLELESNK-LQSLPHGVF--DKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLT 100 (177)
T ss_dssp CCTTCSEEECCSSC-CCCCCTTTT--TTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred CCCCCcEEEeCCCc-ccEeCHHHh--cCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCC-CccccCHHHhhCCc
Confidence 35789999998653 444421111 4689999999998655432 122 257999999999876 47777764 67899
Q ss_pred CCCEEEEcCCC
Q 038559 92 TLKQLQILPLL 102 (137)
Q Consensus 92 sL~~L~i~~~~ 102 (137)
+|+.|++.++.
T Consensus 101 ~L~~L~l~~N~ 111 (177)
T 2o6r_A 101 QLKELALDTNQ 111 (177)
T ss_dssp TCCEEECCSSC
T ss_pred ccCEEECcCCc
Confidence 99999998875
No 80
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.89 E-value=3.6e-05 Score=57.17 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=6.8
Q ss_pred ccCCCCCCEEEEcCC
Q 038559 87 LQFVATLKQLQILPL 101 (137)
Q Consensus 87 l~~l~sL~~L~i~~~ 101 (137)
+..+++|+.|+++++
T Consensus 196 l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQ 210 (291)
T ss_dssp GTTCTTCSEEEEEEE
T ss_pred hccCCCCCEEECcCC
Confidence 344444444444443
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.88 E-value=3.7e-05 Score=57.50 Aligned_cols=40 Identities=23% Similarity=0.158 Sum_probs=20.2
Q ss_pred cccccCCCccceeeecccccceeccceecCccCcccccEEEeccc
Q 038559 9 ALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFH 53 (137)
Q Consensus 9 l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~ 53 (137)
++.++.+++|++|.|.++. +..++ ....+++|+.|++.+.
T Consensus 56 l~~~~~l~~L~~L~L~~n~-i~~~~----~~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 56 IEGVQYLNNLIGLELKDNQ-ITDLA----PLKNLTKITELELSGN 95 (308)
T ss_dssp CTTGGGCTTCCEEECCSSC-CCCCG----GGTTCCSCCEEECCSC
T ss_pred chhhhccCCCCEEEccCCc-CCCCh----hHccCCCCCEEEccCC
Confidence 3455666667777666442 33331 1234555555555553
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.87 E-value=3.4e-05 Score=57.64 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=6.2
Q ss_pred ccCCCccceeeec
Q 038559 12 IQLLPNLKTLTLW 24 (137)
Q Consensus 12 L~~Lp~L~~L~L~ 24 (137)
++.+++|++|.|.
T Consensus 81 ~~~l~~L~~L~L~ 93 (308)
T 1h6u_A 81 LKNLTKITELELS 93 (308)
T ss_dssp GTTCCSCCEEECC
T ss_pred HccCCCCCEEEcc
Confidence 4444444444444
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.87 E-value=3.2e-06 Score=63.26 Aligned_cols=61 Identities=18% Similarity=0.130 Sum_probs=31.4
Q ss_pred cccccEEEeccc-cccc-eeeecCCcCCccceEeeccCccccc--ccccccCCC-CCCEEEEcCCC
Q 038559 42 FHKLEILIIAFH-VLEE-WTEIEEGALPSLKYLQLHKCLKLRM--LLEDLQFVA-TLKQLQILPLL 102 (137)
Q Consensus 42 f~~Lk~L~l~~~-~~~~-~~~~~~g~mp~L~~L~i~~c~~l~~--lp~gl~~l~-sL~~L~i~~~~ 102 (137)
+++|++|++.++ .... .+....+.+++|+.|.+.+|+++.. ++..+.+++ +|++|++++|.
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 555555555553 1111 0001113466666666666644432 455555666 77777776663
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.86 E-value=1e-06 Score=65.94 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=21.7
Q ss_pred cCCccceEeeccCccc-ccccccccCCCCCCEEEEcCCC
Q 038559 65 ALPSLKYLQLHKCLKL-RMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 65 ~mp~L~~L~i~~c~~l-~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
.+|+|+.|.+.+|..+ ...+..+.++++|++|++++|.
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 4566666666665533 2334455566666666666664
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.86 E-value=5.8e-05 Score=59.72 Aligned_cols=14 Identities=36% Similarity=0.268 Sum_probs=7.0
Q ss_pred cccCCCccceeeec
Q 038559 11 VIQLLPNLKTLTLW 24 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~ 24 (137)
.++.+++|++|.|.
T Consensus 343 ~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 343 NCGHLTELETLILQ 356 (520)
T ss_dssp TCCCCSSCCEEECC
T ss_pred hhccCCCCCEEEcc
Confidence 34455555555554
No 86
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.86 E-value=2.8e-05 Score=63.73 Aligned_cols=62 Identities=13% Similarity=0.114 Sum_probs=45.1
Q ss_pred CcccccEEEeccccccce-----------------eeecCC--cCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559 41 GFHKLEILIIAFHVLEEW-----------------TEIEEG--ALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL 101 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~-----------------~~~~~g--~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~ 101 (137)
.+++|++|++.+..+... +...-+ .+++|+.|.+.+|.-...+|..+.++++|++|+++++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 577888888887544331 223335 7888888888888766778888888888888888877
Q ss_pred C
Q 038559 102 L 102 (137)
Q Consensus 102 ~ 102 (137)
.
T Consensus 284 ~ 284 (636)
T 4eco_A 284 R 284 (636)
T ss_dssp T
T ss_pred C
Confidence 5
No 87
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.85 E-value=3.4e-06 Score=65.24 Aligned_cols=97 Identities=23% Similarity=0.259 Sum_probs=61.7
Q ss_pred CCCCcccccc--CCCccceeeecc---ccc----ceeccceecCccCcccccEEEeccccccc---eeeecCCcCCccce
Q 038559 4 LSENSALVIQ--LLPNLKTLTLWL---ASK----AKQLEKEFCSVGGFHKLEILIIAFHVLEE---WTEIEEGALPSLKY 71 (137)
Q Consensus 4 l~~~~l~~L~--~Lp~L~~L~L~~---~~~----~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~---~~~~~~g~mp~L~~ 71 (137)
+..+.+..++ .+|+|++|.|+. .+. ...+. ..+..+.||+|+.|.+.++.... ...++.+.||+|+.
T Consensus 205 l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~-~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~ 283 (362)
T 2ra8_A 205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR-PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLET 283 (362)
T ss_dssp CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG-GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSE
T ss_pred CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH-HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCE
Confidence 3344444554 789999998852 111 11110 02333569999999997754321 01133467999999
Q ss_pred EeeccCcccc-----cccccccCCCCCCEEEEcCCC
Q 038559 72 LQLHKCLKLR-----MLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 72 L~i~~c~~l~-----~lp~gl~~l~sL~~L~i~~~~ 102 (137)
|.+..+ .+. .++.++.++++|+.|+++.|.
T Consensus 284 LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 284 MDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp EECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred EECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 999654 343 367777889999999998876
No 88
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.85 E-value=4.7e-05 Score=56.91 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=56.1
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV 90 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l 90 (137)
.++.+++|++|+|.++. +..++...+ .+.+++|+.|++.+..+... .....+++|+.|.+.++ ++..+|..+..+
T Consensus 139 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l 213 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNE-IDTVNFAEL-AASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSN-KLAFMGPEFQSA 213 (317)
T ss_dssp CTGGGSSEEEEECTTSC-CCEEEGGGG-GGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSS-CCCEECGGGGGG
T ss_pred hhhccCCCCEEECCCCC-CCcccHHHH-hhccCcCCEEECCCCcCccc--ccccccccCCEEECCCC-cCCcchhhhccc
Confidence 45567777777776443 222210011 12467888888887654432 22235888888888776 467777778888
Q ss_pred CCCCEEEEcCCC
Q 038559 91 ATLKQLQILPLL 102 (137)
Q Consensus 91 ~sL~~L~i~~~~ 102 (137)
++|++|+++++.
T Consensus 214 ~~L~~L~L~~N~ 225 (317)
T 3o53_A 214 AGVTWISLRNNK 225 (317)
T ss_dssp TTCSEEECTTSC
T ss_pred CcccEEECcCCc
Confidence 899999998875
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.83 E-value=6.5e-05 Score=61.33 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=55.2
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccc-cccc
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLL-EDLQ 88 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp-~gl~ 88 (137)
..++++++|++|+|.++. +..+.++.+ +.+++|++|++.+..+.......-+.+++|+.|.+.++. +..+| ..+.
T Consensus 43 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 118 (680)
T 1ziw_A 43 ANFTRYSQLTSLDVGFNT-ISKLEPELC--QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFV 118 (680)
T ss_dssp GGGGGGTTCSEEECCSSC-CCCCCTTHH--HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTT
T ss_pred HHHhCCCcCcEEECCCCc-cCccCHHHH--hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHcc
Confidence 346677777777776442 333311111 256788888887754432211113567888888887764 55555 4678
Q ss_pred CCCCCCEEEEcCCC
Q 038559 89 FVATLKQLQILPLL 102 (137)
Q Consensus 89 ~l~sL~~L~i~~~~ 102 (137)
++++|++|+++++.
T Consensus 119 ~l~~L~~L~Ls~n~ 132 (680)
T 1ziw_A 119 KQKNLITLDLSHNG 132 (680)
T ss_dssp TCTTCCEEECCSSC
T ss_pred ccCCCCEEECCCCc
Confidence 88889999888764
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.83 E-value=4.1e-05 Score=60.91 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=32.9
Q ss_pred cccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 42 FHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 42 f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
+++|+.|++.+..+... ....+.+++|+.|.+.++. +..+|..+..+++|+.|++.+++
T Consensus 190 l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred CCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence 44555555554332221 1223456666666666543 55667666677777777777665
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.80 E-value=4.3e-05 Score=62.65 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=14.6
Q ss_pred CCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559 66 LPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL 101 (137)
Q Consensus 66 mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~ 101 (137)
+++|+.|.+.+| .+..+| .+.++++|+.|.+.++
T Consensus 174 l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 174 LTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSE
T ss_pred CCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCC
Confidence 444444444433 233332 2444555555555443
No 92
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.80 E-value=3.1e-05 Score=51.48 Aligned_cols=82 Identities=22% Similarity=0.115 Sum_probs=61.1
Q ss_pred CCCccceeeecccccce--eccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccc-ccccccCC
Q 038559 14 LLPNLKTLTLWLASKAK--QLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRM-LLEDLQFV 90 (137)
Q Consensus 14 ~Lp~L~~L~L~~~~~~~--~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~-lp~gl~~l 90 (137)
..++|+.|.+.++. +. .++ ...+.+++|+.|++.++.+... ...+.+++|+.|.+.++. +.. +|..+.++
T Consensus 15 ~~~~l~~L~l~~n~-l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDNSR-SNEGKLE---GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNR-VSGGLEVLAEKC 87 (149)
T ss_dssp CGGGCSEEECTTCB-CBTTBCC---SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSC-CCSCTHHHHHHC
T ss_pred CCccCeEEEccCCc-CChhHHH---HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCc-ccchHHHHhhhC
Confidence 46889999998664 33 442 1224789999999998655432 233679999999998875 444 77777779
Q ss_pred CCCCEEEEcCCC
Q 038559 91 ATLKQLQILPLL 102 (137)
Q Consensus 91 ~sL~~L~i~~~~ 102 (137)
++|++|+++++.
T Consensus 88 ~~L~~L~ls~N~ 99 (149)
T 2je0_A 88 PNLTHLNLSGNK 99 (149)
T ss_dssp TTCCEEECTTSC
T ss_pred CCCCEEECCCCc
Confidence 999999999876
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.80 E-value=3.8e-05 Score=56.99 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=63.6
Q ss_pred cccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccccc
Q 038559 9 ALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQ 88 (137)
Q Consensus 9 l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~ 88 (137)
++.++.+++|++|.|.++. +..+ .....+++|+.|++.++.+... ...+.+++|+.|.+.+| .+..++. +.
T Consensus 105 ~~~l~~l~~L~~L~L~~n~-i~~~----~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~-l~ 175 (291)
T 1h6t_A 105 LSSLKDLKKLKSLSLEHNG-ISDI----NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP-LA 175 (291)
T ss_dssp GGGGTTCTTCCEEECTTSC-CCCC----GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCCCGG-GT
T ss_pred ChhhccCCCCCEEECCCCc-CCCC----hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC-ccccchh-hc
Confidence 5668999999999998653 3333 1234689999999998654432 22367899999999887 4666665 88
Q ss_pred CCCCCCEEEEcCCC
Q 038559 89 FVATLKQLQILPLL 102 (137)
Q Consensus 89 ~l~sL~~L~i~~~~ 102 (137)
.+++|++|+++++.
T Consensus 176 ~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 176 GLTKLQNLYLSKNH 189 (291)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCCccCEEECCCCc
Confidence 89999999998875
No 94
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.79 E-value=9.4e-05 Score=51.54 Aligned_cols=83 Identities=14% Similarity=0.053 Sum_probs=58.1
Q ss_pred ccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCCCE
Q 038559 17 NLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQ 95 (137)
Q Consensus 17 ~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~ 95 (137)
+|++|.+.+.. +..++... ..+.+++|++|++.+..+.......-+.+++|+.|.+.+.. +..+|. .+.++++|++
T Consensus 30 ~l~~L~l~~n~-i~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDNE-LGRISSDG-LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKT 106 (192)
T ss_dssp TCSEEECCSCC-CCSBCCSC-SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCE
T ss_pred CCCEEECCCCc-CCccCCcc-ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCE
Confidence 89999998553 44442110 02478999999999865543322223678999999998764 666654 5788999999
Q ss_pred EEEcCCC
Q 038559 96 LQILPLL 102 (137)
Q Consensus 96 L~i~~~~ 102 (137)
|+++++.
T Consensus 107 L~L~~N~ 113 (192)
T 1w8a_A 107 LNLYDNQ 113 (192)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 9998875
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.78 E-value=0.00011 Score=58.98 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=20.5
Q ss_pred CccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 67 PSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 67 p~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
++|+.|.+.++ +++.+|.++.++++|++|+++++.
T Consensus 450 ~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC
T ss_pred CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC
Confidence 45666666554 355566655566666666665553
No 96
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.78 E-value=5.7e-05 Score=59.33 Aligned_cols=84 Identities=15% Similarity=0.193 Sum_probs=44.9
Q ss_pred cccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccccc
Q 038559 9 ALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQ 88 (137)
Q Consensus 9 l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~ 88 (137)
++.++.+++|++|+|.++. +..++ ....+++|+.|.+.++...... ..+.+++|+.|.+.+| .+..+|. +.
T Consensus 61 l~~~~~l~~L~~L~Ls~n~-l~~~~----~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n-~l~~~~~-~~ 131 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNNQ-LTDIT----PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNN-QITDIDP-LK 131 (466)
T ss_dssp CTTGGGCTTCCEEECCSSC-CCCCG----GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS-CCCCCGG-GT
T ss_pred CcchhhhcCCCEEECCCCc-cCCch----hhhccccCCEEECCCCccccCh--hhcCCCCCCEEECCCC-CCCCChH-Hc
Confidence 4556677778888777543 33331 1335666666666654333221 1345666666666554 2444443 45
Q ss_pred CCCCCCEEEEcCC
Q 038559 89 FVATLKQLQILPL 101 (137)
Q Consensus 89 ~l~sL~~L~i~~~ 101 (137)
++++|++|+++++
T Consensus 132 ~l~~L~~L~l~~n 144 (466)
T 1o6v_A 132 NLTNLNRLELSSN 144 (466)
T ss_dssp TCTTCSEEEEEEE
T ss_pred CCCCCCEEECCCC
Confidence 5555555555443
No 97
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.77 E-value=5.2e-05 Score=56.75 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=41.2
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
.+++|+.|++.+..+.......-+.+++|+.|.+.++ .+..+|.++..+++|++|++.+++
T Consensus 214 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence 4566777777664433221111245788888888776 466788888888888888888765
No 98
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.76 E-value=4.2e-05 Score=63.87 Aligned_cols=87 Identities=18% Similarity=0.055 Sum_probs=63.7
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccC
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQF 89 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~ 89 (137)
..+..+++|+.|+|.++. +..++... ..+++|+.|+|.+..+.. +....+.|++|+.|.+.++. +..+|..+.+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~-l~~l~~~~---~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~ 291 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQ-IFNISANI---FKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNR-LTSLPAELGS 291 (727)
T ss_dssp ----CCCCCCEEECTTSC-CSCCCGGG---GGCCSCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSC-CSSCCSSGGG
T ss_pred hhhccCCCCcEEECCCCC-CCCCChhh---cCCCCCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCc-CCccChhhcC
Confidence 346788999999998654 44553222 368999999999865542 22334679999999998875 7789999999
Q ss_pred CCCCCEEEEcCCC
Q 038559 90 VATLKQLQILPLL 102 (137)
Q Consensus 90 l~sL~~L~i~~~~ 102 (137)
+++|++|.++++.
T Consensus 292 l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 292 CFQLKYFYFFDNM 304 (727)
T ss_dssp GTTCSEEECCSSC
T ss_pred CCCCCEEECCCCC
Confidence 9999999998874
No 99
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.75 E-value=4.2e-05 Score=65.33 Aligned_cols=20 Identities=25% Similarity=0.114 Sum_probs=9.2
Q ss_pred cccccccCCCCCCEEEEcCC
Q 038559 82 MLLEDLQFVATLKQLQILPL 101 (137)
Q Consensus 82 ~lp~gl~~l~sL~~L~i~~~ 101 (137)
.+|..+.++++|++|.+++|
T Consensus 797 ~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 797 QWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp CCCTTGGGCSSCCEEECCSS
T ss_pred cChHHHhcCCCCCEEECCCC
Confidence 34444444444444444444
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.75 E-value=6.6e-05 Score=54.96 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=20.3
Q ss_pred CcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 64 GALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 64 g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
+.+++|+.|.+.++. ++.+| .+..+++|+.|+++++.
T Consensus 125 ~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 125 IHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp TTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSC
T ss_pred cCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCc
Confidence 345556666555442 44444 35556666666666554
No 101
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.75 E-value=0.00011 Score=55.04 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=20.5
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccc
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFH 53 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~ 53 (137)
.++.+++|++|.|.++. +..+.++. .+.+++|++|++.+.
T Consensus 71 ~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 71 DFKNLKNLHTLILINNK-ISKISPGA--FAPLVKLERLYLSKN 110 (330)
T ss_dssp TTTTCTTCCEEECCSSC-CCCBCTTT--TTTCTTCCEEECCSS
T ss_pred hhccCCCCCEEECCCCc-CCeeCHHH--hcCCCCCCEEECCCC
Confidence 46667777777776432 22221101 124566666666553
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.73 E-value=4.9e-05 Score=62.33 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=64.0
Q ss_pred cccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccccc
Q 038559 9 ALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQ 88 (137)
Q Consensus 9 l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~ 88 (137)
++.++.|++|+.|.|.++. +..+ .....+++|+.|.+.++.+... ...+.+++|+.|.+.+|. +..++. +.
T Consensus 102 l~~l~~l~~L~~L~Ls~N~-l~~l----~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~-l~~~~~-l~ 172 (605)
T 1m9s_A 102 LSSLKDLKKLKSLSLEHNG-ISDI----NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ-ISDIVP-LA 172 (605)
T ss_dssp CTTSTTCTTCCEEECTTSC-CCCC----GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSC-CCCCGG-GT
T ss_pred ChhhccCCCCCEEEecCCC-CCCC----ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCc-CCCchh-hc
Confidence 4678899999999998654 3333 1234789999999998655432 233679999999998874 666655 88
Q ss_pred CCCCCCEEEEcCCC
Q 038559 89 FVATLKQLQILPLL 102 (137)
Q Consensus 89 ~l~sL~~L~i~~~~ 102 (137)
.+++|++|.+++|.
T Consensus 173 ~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 173 GLTKLQNLYLSKNH 186 (605)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCCCCCEEECcCCC
Confidence 89999999998875
No 103
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.73 E-value=0.00015 Score=50.71 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=58.3
Q ss_pred CccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCCC
Q 038559 16 PNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATLK 94 (137)
Q Consensus 16 p~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~ 94 (137)
++|++|.|.+.. +..++ .....+++|+.|++.+..+.....-.-+.+++|+.|.+.+.. +..+|. .+..+++|+
T Consensus 31 ~~l~~L~L~~n~-i~~ip---~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTLVP---KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLR 105 (193)
T ss_dssp TTCCEEECCSSC-CCSCC---GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCC
T ss_pred CCCCEEECCCCc-CchhH---HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCC
Confidence 589999998543 44442 122468999999999865543211113568999999998764 666665 688899999
Q ss_pred EEEEcCCC
Q 038559 95 QLQILPLL 102 (137)
Q Consensus 95 ~L~i~~~~ 102 (137)
.|+++++.
T Consensus 106 ~L~L~~N~ 113 (193)
T 2wfh_A 106 LLSLHGND 113 (193)
T ss_dssp EEECCSSC
T ss_pred EEECCCCC
Confidence 99998875
No 104
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.73 E-value=5.3e-05 Score=62.03 Aligned_cols=53 Identities=21% Similarity=0.150 Sum_probs=23.3
Q ss_pred cccEEEeccccccceeeecCC--cCCccceEeeccCcccccccccccCCCCCCEEEE
Q 038559 44 KLEILIIAFHVLEEWTEIEEG--ALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQI 98 (137)
Q Consensus 44 ~Lk~L~l~~~~~~~~~~~~~g--~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i 98 (137)
+|+.|++.+..+.. +....+ .+++|+.|.+.++. +..+|..+.++++|+.|++
T Consensus 489 ~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 489 LLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp GCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEEC
T ss_pred CccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEEC
Confidence 55555555533321 111112 45555555554432 3334444444555555554
No 105
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.72 E-value=0.00018 Score=56.80 Aligned_cols=79 Identities=22% Similarity=0.149 Sum_probs=39.1
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV 90 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l 90 (137)
.++.+++|++|.|.++. +..+ +.+.+++|++|++.+..+... ..+.+++|+.|.+.++ ++..+| +.++
T Consensus 59 ~l~~l~~L~~L~Ls~n~-l~~~-----~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N-~l~~l~--~~~l 126 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNN-ITTL-----DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTN-KLTKLD--VSQN 126 (457)
T ss_dssp TGGGCTTCSEEECCSSC-CSCC-----CCTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSS-CCSCCC--CTTC
T ss_pred hhcccCCCCEEEccCCc-CCeE-----ccccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCC-cCCeec--CCCC
Confidence 45556666666665332 2222 123455666666655433221 2345666666666554 244443 4455
Q ss_pred CCCCEEEEcCC
Q 038559 91 ATLKQLQILPL 101 (137)
Q Consensus 91 ~sL~~L~i~~~ 101 (137)
++|++|+++++
T Consensus 127 ~~L~~L~l~~N 137 (457)
T 3bz5_A 127 PLLTYLNCARN 137 (457)
T ss_dssp TTCCEEECTTS
T ss_pred CcCCEEECCCC
Confidence 55555555544
No 106
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.71 E-value=0.00015 Score=54.35 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=47.7
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccC
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQF 89 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~ 89 (137)
.++++++|++|.|.++. +..+.++. .+.+++|+.|++.+..+.. +.....++|+.|.+.++. +..+|. .+.+
T Consensus 73 ~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~L~~n~l~~---l~~~~~~~L~~L~l~~n~-i~~~~~~~~~~ 145 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNK-ISKIHEKA--FSPLRKLQKLYISKNHLVE---IPPNLPSSLVELRIHDNR-IRKVPKGVFSG 145 (332)
T ss_dssp TTTTCTTCCEEECCSSC-CCEECGGG--STTCTTCCEEECCSSCCCS---CCSSCCTTCCEEECCSSC-CCCCCSGGGSS
T ss_pred HhhCCCCCcEEECCCCc-cCccCHhH--hhCcCCCCEEECCCCcCCc---cCccccccCCEEECCCCc-cCccCHhHhCC
Confidence 45667777777776443 33331111 1356677777776643331 222334677777776543 445554 3667
Q ss_pred CCCCCEEEEcCCC
Q 038559 90 VATLKQLQILPLL 102 (137)
Q Consensus 90 l~sL~~L~i~~~~ 102 (137)
+++|++|++.++.
T Consensus 146 l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 146 LRNMNCIEMGGNP 158 (332)
T ss_dssp CSSCCEEECCSCC
T ss_pred CccCCEEECCCCc
Confidence 7777877777664
No 107
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.71 E-value=9.6e-05 Score=58.77 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=55.1
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV 90 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l 90 (137)
.++.+++|++|+|+++. +..++...+ .+.+++|+.|++.++.+... .....+++|+.|.+.++ .+..+|..+..+
T Consensus 139 ~~~~l~~L~~L~Ls~N~-l~~~~~~~l-~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l 213 (487)
T 3oja_A 139 DEGCRSRVQYLDLKLNE-IDTVNFAEL-AASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSN-KLAFMGPEFQSA 213 (487)
T ss_dssp CGGGGSSEEEEECTTSC-CCEEEGGGG-GGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSS-CCCEECGGGGGG
T ss_pred hhcCCCCCCEEECCCCC-CCCcChHHH-hhhCCcccEEecCCCccccc--cccccCCCCCEEECCCC-CCCCCCHhHcCC
Confidence 45667777777776443 222200011 12467888888887554432 22345888888888776 367777778888
Q ss_pred CCCCEEEEcCCC
Q 038559 91 ATLKQLQILPLL 102 (137)
Q Consensus 91 ~sL~~L~i~~~~ 102 (137)
++|+.|+++++.
T Consensus 214 ~~L~~L~Ls~N~ 225 (487)
T 3oja_A 214 AGVTWISLRNNK 225 (487)
T ss_dssp TTCSEEECTTSC
T ss_pred CCccEEEecCCc
Confidence 889999988765
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.67 E-value=0.00014 Score=53.26 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=15.6
Q ss_pred cCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559 65 ALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL 101 (137)
Q Consensus 65 ~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~ 101 (137)
.+++|+.|.+.++. +..+ ..+..+++|+.|+++++
T Consensus 148 ~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 148 FLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp GCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEE
T ss_pred cCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCC
Confidence 34555555554432 2222 33444455555555443
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.64 E-value=8.2e-05 Score=56.42 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=54.2
Q ss_pred CccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCE
Q 038559 16 PNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQ 95 (137)
Q Consensus 16 p~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~ 95 (137)
++|+.|.+.+...+..++.+.| ..+++|+.|++++..+. .+..+++.+|+.|.+.++.+++.+|. +.++++|+.
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f--~~l~~L~~LdLs~N~l~---~lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~ 250 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVF--HGASGPVILDISRTRIH---SLPSYGLENLKKLRARSTYNLKKLPT-LEKLVALME 250 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTT--TTEECCSEEECTTSCCC---CCCSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCE
T ss_pred cchhHHhhccCCcccCCCHHHh--ccCcccchhhcCCCCcC---ccChhhhccchHhhhccCCCcCcCCC-chhCcChhh
Confidence 4444444443333444422222 35688888998876544 24456789999999999999999995 888999999
Q ss_pred EEEcC
Q 038559 96 LQILP 100 (137)
Q Consensus 96 L~i~~ 100 (137)
+++..
T Consensus 251 l~l~~ 255 (350)
T 4ay9_X 251 ASLTY 255 (350)
T ss_dssp EECSC
T ss_pred CcCCC
Confidence 99854
No 110
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.61 E-value=0.00011 Score=57.64 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=18.7
Q ss_pred CcCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559 64 GALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL 101 (137)
Q Consensus 64 g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~ 101 (137)
+.+++|+.|.+.+|. +...+. +.++++|++|.+.+|
T Consensus 350 ~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ 385 (466)
T ss_dssp TTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCE
T ss_pred ccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCC
Confidence 345555555555553 222222 555666666666554
No 111
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.61 E-value=0.00023 Score=59.97 Aligned_cols=89 Identities=22% Similarity=0.410 Sum_probs=53.9
Q ss_pred ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-ccc
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQ 88 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~ 88 (137)
..++.+++|+.|.|.++. +..+.++. ..++++|+.|++.+..+.......-+.+++|+.|.+.++ .+..++. .+.
T Consensus 284 ~~~~~l~~L~~L~L~~n~-i~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~ 359 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNK-INKIADEA--FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFK 359 (844)
T ss_dssp CCSSSCCCCCEEEEESCC-CCEECTTT--TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSC
T ss_pred hhhhcCCCCCEEECCCCc-CCCCChHH--hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhc
Confidence 345677777777776443 33331111 236778888888775443322223356788888888766 3555544 466
Q ss_pred CCCCCCEEEEcCCC
Q 038559 89 FVATLKQLQILPLL 102 (137)
Q Consensus 89 ~l~sL~~L~i~~~~ 102 (137)
++++|+.|.++++.
T Consensus 360 ~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 360 FLEKLQTLDLRDNA 373 (844)
T ss_dssp SCCCCCEEEEETCC
T ss_pred CCCCCCEEECCCCC
Confidence 77788888877664
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.58 E-value=0.00016 Score=54.85 Aligned_cols=84 Identities=24% Similarity=0.250 Sum_probs=55.2
Q ss_pred CccceeeecccccceeccceecCccCcccccEEEeccccccceeeecC-CcCCccceEeeccCcccccccc-cccCCCCC
Q 038559 16 PNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEE-GALPSLKYLQLHKCLKLRMLLE-DLQFVATL 93 (137)
Q Consensus 16 p~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~-g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL 93 (137)
++|++|.|.+.. +..++++.| .++++|++|++.+....+.+.... ..+++|..+.+..+.++..+|. .+.++++|
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~~~f--~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQKGAF--SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCC-CSEECTTSS--TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CCCCEEEccCCc-CCCcCHHHH--cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 478899887543 666633223 367889999998865544321111 3466777776767777877754 56788888
Q ss_pred CEEEEcCCC
Q 038559 94 KQLQILPLL 102 (137)
Q Consensus 94 ~~L~i~~~~ 102 (137)
+.|.+.++.
T Consensus 107 ~~L~l~~n~ 115 (350)
T 4ay9_X 107 QYLLISNTG 115 (350)
T ss_dssp CEEEEEEEC
T ss_pred ccccccccc
Confidence 888887654
No 113
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=3.4e-05 Score=65.84 Aligned_cols=38 Identities=13% Similarity=-0.102 Sum_probs=18.7
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCc
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCL 78 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~ 78 (137)
.+++|+.|.+.++.+...+...-+.|++|+.|.+.++.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 45666666666543332222222445555555555443
No 114
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.55 E-value=7.4e-05 Score=56.02 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=37.9
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
.+++|+.|++.+..+.......-+.+++|+.|.+.++ ++..+|.++..+++|+.|++++++
T Consensus 215 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC
Confidence 4566777777664333221111245777777777765 366777777777777777777654
No 115
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.53 E-value=3.9e-05 Score=53.75 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=55.0
Q ss_pred ccceeeecccccceeccceecCccCcccccEEEecccccc-ceeeec-CCcC----CccceEeeccCccccccc-ccccC
Q 038559 17 NLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLE-EWTEIE-EGAL----PSLKYLQLHKCLKLRMLL-EDLQF 89 (137)
Q Consensus 17 ~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~-~~~~~~-~g~m----p~L~~L~i~~c~~l~~lp-~gl~~ 89 (137)
+|+.|+|++|. +...+ ...-.++++|+.|.+.+|... .. .+. .+.+ ++|+.|.+.+|++++.-- ..+.+
T Consensus 62 ~L~~LDLs~~~-Itd~G--L~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIG--FDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CEEEEEEESCC-CCGGG--GGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred eEeEEeCcCCC-ccHHH--HHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 58999998775 32221 112247999999999987432 11 010 1233 589999999999874311 23567
Q ss_pred CCCCCEEEEcCCC
Q 038559 90 VATLKQLQILPLL 102 (137)
Q Consensus 90 l~sL~~L~i~~~~ 102 (137)
+++|++|.+++|+
T Consensus 138 ~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 138 FRNLKYLFLSDLP 150 (176)
T ss_dssp CTTCCEEEEESCT
T ss_pred CCCCCEEECCCCC
Confidence 8999999999998
No 116
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.48 E-value=0.00015 Score=53.88 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=58.6
Q ss_pred ccCCCccceeeecccccceeccceecC-ccCcccccEEEeccccccceeeecCCc---CCccceEeeccCcccccccccc
Q 038559 12 IQLLPNLKTLTLWLASKAKQLEKEFCS-VGGFHKLEILIIAFHVLEEWTEIEEGA---LPSLKYLQLHKCLKLRMLLEDL 87 (137)
Q Consensus 12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~-~~~f~~Lk~L~l~~~~~~~~~~~~~g~---mp~L~~L~i~~c~~l~~lp~gl 87 (137)
++.+|+|++|.|.++. +..++..... .+.+++|++|++.+..+........+. +++|+.|.+.++ +++.+|.++
T Consensus 193 ~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~ 270 (310)
T 4glp_A 193 PHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL 270 (310)
T ss_dssp TTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC
T ss_pred hhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh
Confidence 4689999999998653 3333110110 135689999999986554331111233 379999999776 477888877
Q ss_pred cCCCCCCEEEEcCCC
Q 038559 88 QFVATLKQLQILPLL 102 (137)
Q Consensus 88 ~~l~sL~~L~i~~~~ 102 (137)
. ++|++|+++++.
T Consensus 271 ~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 271 P--AKLRVLDLSSNR 283 (310)
T ss_dssp C--SCCSCEECCSCC
T ss_pred c--CCCCEEECCCCc
Confidence 3 799999998876
No 117
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.47 E-value=0.00013 Score=54.45 Aligned_cols=39 Identities=26% Similarity=0.257 Sum_probs=17.7
Q ss_pred CcCCccceEeeccCccccc--ccccc--cCCCCCCEEEEcCCC
Q 038559 64 GALPSLKYLQLHKCLKLRM--LLEDL--QFVATLKQLQILPLL 102 (137)
Q Consensus 64 g~mp~L~~L~i~~c~~l~~--lp~gl--~~l~sL~~L~i~~~~ 102 (137)
+.+++|+.|.+.++.-... +|..+ ..+++|++|+++++.
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence 3455555555554432211 22222 445555555555443
No 118
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.46 E-value=0.00016 Score=53.96 Aligned_cols=86 Identities=17% Similarity=0.093 Sum_probs=59.7
Q ss_pred CCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcC-----CccceEeeccCccccccc-ccc
Q 038559 14 LLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGAL-----PSLKYLQLHKCLKLRMLL-EDL 87 (137)
Q Consensus 14 ~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~m-----p~L~~L~i~~c~~l~~lp-~gl 87 (137)
.+++|++|+|.++.-...++...+ .+.+++|+.|++.+..+... ....+.+ ++|+.|.+.++. +..+| ..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLL-EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSS-SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTC
T ss_pred CcCCccEEEccCCcccchhHHHHH-HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHh
Confidence 689999999986542223321111 25789999999998654432 1111233 899999998875 55555 688
Q ss_pred cCCCCCCEEEEcCCC
Q 038559 88 QFVATLKQLQILPLL 102 (137)
Q Consensus 88 ~~l~sL~~L~i~~~~ 102 (137)
.++++|++|+++++.
T Consensus 170 ~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 170 RVFPALSTLDLSDNP 184 (312)
T ss_dssp CCCSSCCEEECCSCT
T ss_pred ccCCCCCEEECCCCC
Confidence 899999999999886
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.43 E-value=7e-06 Score=57.48 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=24.3
Q ss_pred cCCccceEeeccCcccccccc--cccCCCCCCEEEEcCCC
Q 038559 65 ALPSLKYLQLHKCLKLRMLLE--DLQFVATLKQLQILPLL 102 (137)
Q Consensus 65 ~mp~L~~L~i~~c~~l~~lp~--gl~~l~sL~~L~i~~~~ 102 (137)
.+++|+.|.+.++. +..+|. .+..+++|++|++.+++
T Consensus 113 ~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 113 KLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred cCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 45666666665543 444443 56778888888888875
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.42 E-value=0.00057 Score=53.88 Aligned_cols=13 Identities=23% Similarity=0.064 Sum_probs=6.7
Q ss_pred ccCCCccceeeec
Q 038559 12 IQLLPNLKTLTLW 24 (137)
Q Consensus 12 L~~Lp~L~~L~L~ 24 (137)
++.+++|++|.+.
T Consensus 81 ~~~l~~L~~L~Ls 93 (457)
T 3bz5_A 81 LSQNTNLTYLACD 93 (457)
T ss_dssp CTTCTTCSEEECC
T ss_pred cccCCCCCEEECc
Confidence 4455555555554
No 121
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.38 E-value=3.7e-05 Score=53.87 Aligned_cols=80 Identities=15% Similarity=-0.051 Sum_probs=53.6
Q ss_pred CCCCCCccccccCCCccceeeecccccceeccceecCcc--CcccccEEEeccccc-cc-eeeecCCcCCccceEeeccC
Q 038559 2 SHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVG--GFHKLEILIIAFHVL-EE-WTEIEEGALPSLKYLQLHKC 77 (137)
Q Consensus 2 s~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~--~f~~Lk~L~l~~~~~-~~-~~~~~~g~mp~L~~L~i~~c 77 (137)
+.+..+.+..|..+++|++|.|.+|..+..-+-..+... ..++|+.|++.+|.. .. .+ .....+|+|+.|.+.+|
T Consensus 71 ~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 71 SCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDL 149 (176)
T ss_dssp CCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESC
T ss_pred CCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCC
Confidence 457777888899999999999998864432100011111 235899999998642 21 11 11246999999999999
Q ss_pred ccccc
Q 038559 78 LKLRM 82 (137)
Q Consensus 78 ~~l~~ 82 (137)
++++.
T Consensus 150 ~~Itd 154 (176)
T 3e4g_A 150 PGVKE 154 (176)
T ss_dssp TTCCC
T ss_pred CCCCc
Confidence 97754
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.34 E-value=0.00036 Score=57.43 Aligned_cols=57 Identities=16% Similarity=0.090 Sum_probs=43.6
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
.+++|+.|++.++.+.. +.. .+++|+.|.+.+| ++..+|..+.++++|+.|++++++
T Consensus 239 ~l~~L~~L~Ls~N~L~~---lp~-~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 239 LPSELKELMVSGNRLTS---LPM-LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCTTCCEEECCSSCCSC---CCC-CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCcCcEEECCCCCCCc---CCc-ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 45677777777654432 122 6788999999877 577899999999999999999887
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.30 E-value=5.6e-06 Score=57.96 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=59.9
Q ss_pred cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV 90 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l 90 (137)
.++.+++|++|.|.++. +..++ ....+++|+.|++.++.+... ....+.+|+|+.|.+.++ ++..+| ++..+
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l~----~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKIS----SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYN-QIASLS-GIEKL 114 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCCC----CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEE-ECCCHH-HHHHH
T ss_pred HHhcCCCCCEEECCCCC-Ccccc----ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCC-cCCcCC-ccccC
Confidence 57788999999997543 34342 234688999999988654422 111245789999999877 466777 57788
Q ss_pred CCCCEEEEcCCC
Q 038559 91 ATLKQLQILPLL 102 (137)
Q Consensus 91 ~sL~~L~i~~~~ 102 (137)
++|+.|++.++.
T Consensus 115 ~~L~~L~l~~N~ 126 (198)
T 1ds9_A 115 VNLRVLYMSNNK 126 (198)
T ss_dssp HHSSEEEESEEE
T ss_pred CCCCEEECCCCc
Confidence 899999998764
No 124
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.28 E-value=0.00035 Score=51.93 Aligned_cols=62 Identities=19% Similarity=0.104 Sum_probs=30.0
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccc--cccc--cccCCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLR--MLLE--DLQFVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~--~lp~--gl~~l~sL~~L~i~~~~ 102 (137)
.+++|++|.+.++.+.......-+.+++|+.|.+.++.-.. .++. .+.++++|++|.+++|.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 35566666666543322111112356666666666554221 1222 22456666666666554
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.27 E-value=0.00078 Score=54.74 Aligned_cols=78 Identities=17% Similarity=0.106 Sum_probs=56.7
Q ss_pred ccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEE
Q 038559 17 NLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQL 96 (137)
Q Consensus 17 ~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L 96 (137)
.|+.|.|.++. +..++ ..+.+++|+.|++.+..+.. +....+.|++|+.|.+.++ .+..+| ++.++++|+.|
T Consensus 442 ~L~~L~Ls~n~-l~~lp----~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKD-LTVLC----HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSC-CSSCC----CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEE
T ss_pred CceEEEecCCC-CCCCc----CccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEE
Confidence 46677776442 44442 24478899999999865542 2334478999999999876 477788 78999999999
Q ss_pred EEcCCC
Q 038559 97 QILPLL 102 (137)
Q Consensus 97 ~i~~~~ 102 (137)
.++++.
T Consensus 514 ~Ls~N~ 519 (567)
T 1dce_A 514 LLCNNR 519 (567)
T ss_dssp ECCSSC
T ss_pred ECCCCC
Confidence 998864
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.19 E-value=9.2e-05 Score=56.61 Aligned_cols=37 Identities=16% Similarity=-0.045 Sum_probs=19.2
Q ss_pred CCccceEeeccCcccc----cccccc-cCCCCCCEEEEcCCC
Q 038559 66 LPSLKYLQLHKCLKLR----MLLEDL-QFVATLKQLQILPLL 102 (137)
Q Consensus 66 mp~L~~L~i~~c~~l~----~lp~gl-~~l~sL~~L~i~~~~ 102 (137)
+++|+.|.+.+|.--. .+|..+ .++++|+.|.+++++
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 5566666665553211 255544 345666666665543
No 127
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.13 E-value=0.0008 Score=45.90 Aligned_cols=67 Identities=19% Similarity=0.076 Sum_probs=45.9
Q ss_pred ccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccC
Q 038559 8 SALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKC 77 (137)
Q Consensus 8 ~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c 77 (137)
+-..++.|++|++|+|.+.. +..++.+.+ ..+++|+.|++.+..+.......-+.+++|+.|.+.+-
T Consensus 46 ~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 46 EPGVFDRLTQLTRLDLDNNQ-LTVLPAGVF--DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CTTTTTTCTTCSEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ChhhhcCcccCCEEECCCCC-cCccChhhc--cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 33457899999999998553 555532222 47899999999986554322111357899999999753
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.12 E-value=0.0015 Score=51.45 Aligned_cols=55 Identities=20% Similarity=0.191 Sum_probs=24.7
Q ss_pred CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL 101 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~ 101 (137)
.+++|++|++.+..+... . ..+++|+.|.+.++ ++..+| ++.++++|++|++.++
T Consensus 151 ~l~~L~~L~l~~N~l~~l---p-~~~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKKL---P-DLPPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TCTTCCEEECCSSCCSCC---C-CCCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCcCccc---C-CCcccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC
Confidence 445555555554332211 0 12345555555444 234444 3455555555555444
No 129
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.08 E-value=0.0019 Score=44.27 Aligned_cols=62 Identities=16% Similarity=0.078 Sum_probs=47.3
Q ss_pred cCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccc-ccCCCCCCEEEEcCCC
Q 038559 40 GGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLED-LQFVATLKQLQILPLL 102 (137)
Q Consensus 40 ~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~g-l~~l~sL~~L~i~~~~ 102 (137)
+-+++|+.|++.+..+.......-+.+++|+.|.+.+. ++..+|.+ +.++++|+.|+++++.
T Consensus 30 ~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 34589999999986554332222367999999999876 68888876 4789999999998864
No 130
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.86 E-value=0.00015 Score=57.95 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=33.4
Q ss_pred cccccEEEeccccccce-eeecCCcCCccceEeeccCcc-cccccccccCCCCCCEEEEcCCC
Q 038559 42 FHKLEILIIAFHVLEEW-TEIEEGALPSLKYLQLHKCLK-LRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 42 f~~Lk~L~l~~~~~~~~-~~~~~g~mp~L~~L~i~~c~~-l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
+++|+.|.+.++..... +......+++|+.|.+.+|+- ...++..+.++++|++|++++|.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 55566666655432210 000113467777777777761 12344445567777777777775
No 131
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.78 E-value=0.00017 Score=57.72 Aligned_cols=38 Identities=24% Similarity=0.071 Sum_probs=21.8
Q ss_pred cCCccceEeeccCcc----cccccccccCCCCCCEEEEcCCC
Q 038559 65 ALPSLKYLQLHKCLK----LRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 65 ~mp~L~~L~i~~c~~----l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
.+|+|+.|.+.+|.- ...++.-..++++|++|.+++|.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 466677777666651 11122223356678888887774
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.77 E-value=0.00031 Score=53.61 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=30.8
Q ss_pred CcccccEEEecccccc----ceeeecCCcCCccceEeeccCccc----cccccccc--CCCCCCEEEEcCCC
Q 038559 41 GFHKLEILIIAFHVLE----EWTEIEEGALPSLKYLQLHKCLKL----RMLLEDLQ--FVATLKQLQILPLL 102 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~----~~~~~~~g~mp~L~~L~i~~c~~l----~~lp~gl~--~l~sL~~L~i~~~~ 102 (137)
.+++|+.|++.++.+. ..+......+|+|+.|.+.+|.-- ..+|..+. ++++|++|.+++|.
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 4566666666654331 111111234666666666665421 12344442 26666667666654
No 133
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.74 E-value=0.00018 Score=57.45 Aligned_cols=87 Identities=16% Similarity=0.096 Sum_probs=37.6
Q ss_pred CCCccceeeecccccceeccceecCccCcccccEEEeccccccc----eeeecCCcCCccceEeeccCc-cc--cccccc
Q 038559 14 LLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEE----WTEIEEGALPSLKYLQLHKCL-KL--RMLLED 86 (137)
Q Consensus 14 ~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~----~~~~~~g~mp~L~~L~i~~c~-~l--~~lp~g 86 (137)
.+|+|++|.|.+|.......- ..-...+++|++|++.++.... ++..-...+++|+.|.+..|. .+ ..++.-
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 206 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGL-AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHH-HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHH-HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence 466777777765532221000 0001246667777766543111 110011245566666665553 11 112111
Q ss_pred ccCCCCCCEEEEcCC
Q 038559 87 LQFVATLKQLQILPL 101 (137)
Q Consensus 87 l~~l~sL~~L~i~~~ 101 (137)
+.++++|++|.+.+|
T Consensus 207 ~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHCTTCCEEECCTT
T ss_pred HHhCCCCcEEecCCC
Confidence 223455555555555
No 134
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.69 E-value=0.002 Score=50.73 Aligned_cols=57 Identities=28% Similarity=0.260 Sum_probs=25.2
Q ss_pred cccccEEEeccccccceeeecCCcCCccceEeeccCcccc--cccccccCC-------------CCCCEEEEcCCC
Q 038559 42 FHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLR--MLLEDLQFV-------------ATLKQLQILPLL 102 (137)
Q Consensus 42 f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~--~lp~gl~~l-------------~sL~~L~i~~~~ 102 (137)
+++|+.|++.++.+.. +.. .+++|+.|.+.++.-.. .+|.++.++ ++|+.|++++++
T Consensus 336 ~~~L~~L~L~~N~l~~---lp~-~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 336 PPRLERLIASFNHLAE---VPE-LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CTTCCEEECCSSCCSC---CCC-CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred CCcCCEEECCCCcccc---ccc-hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 4666666666643332 112 46777777776654222 456666655 667777776654
No 135
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.39 E-value=0.0086 Score=49.23 Aligned_cols=13 Identities=38% Similarity=0.439 Sum_probs=7.1
Q ss_pred CCCccceeeeccc
Q 038559 14 LLPNLKTLTLWLA 26 (137)
Q Consensus 14 ~Lp~L~~L~L~~~ 26 (137)
.+++|++|+|+++
T Consensus 79 ~l~~L~~L~Ls~N 91 (622)
T 3g06_A 79 LPPELRTLEVSGN 91 (622)
T ss_dssp CCTTCCEEEECSC
T ss_pred cCCCCCEEEcCCC
Confidence 3456666666543
No 136
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.27 E-value=0.006 Score=49.71 Aligned_cols=55 Identities=11% Similarity=0.115 Sum_probs=36.0
Q ss_pred ccccEEEeccccccceeeecCCcCCcc-------ceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559 43 HKLEILIIAFHVLEEWTEIEEGALPSL-------KYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 43 ~~Lk~L~l~~~~~~~~~~~~~g~mp~L-------~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
++|+.|++.++.+..... -.++| +.|.+.++ .+..+|.++.++++|+.|++++++
T Consensus 180 ~~L~~L~Ls~N~L~~lp~----~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 180 ESLEALDVSTNLLESLPA----VPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp TTCCEEECCSSCCSSCCC----CC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred CCCCEEECcCCCCCchhh----HHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 566666666644332211 11155 88888765 477889888889999999999886
No 137
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.06 E-value=0.018 Score=46.94 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=5.4
Q ss_pred CCCCEEEEcCC
Q 038559 91 ATLKQLQILPL 101 (137)
Q Consensus 91 ~sL~~L~i~~~ 101 (137)
++|+.|+++++
T Consensus 180 ~~L~~L~Ls~N 190 (571)
T 3cvr_A 180 ESLEALDVSTN 190 (571)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEECcCC
Confidence 45555555443
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.90 E-value=0.00084 Score=52.02 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=46.6
Q ss_pred ccCCCccceeeecccccceeccceec--CccCcccccEEEeccccccce-eeecCCcCC----ccceEeeccCccc----
Q 038559 12 IQLLPNLKTLTLWLASKAKQLEKEFC--SVGGFHKLEILIIAFHVLEEW-TEIEEGALP----SLKYLQLHKCLKL---- 80 (137)
Q Consensus 12 L~~Lp~L~~L~L~~~~~~~~l~~~~~--~~~~f~~Lk~L~l~~~~~~~~-~~~~~g~mp----~L~~L~i~~c~~l---- 80 (137)
+..+|+|++|+|.++. +.......+ ....+++|++|++.+..+... +..-..+++ +|+.|.+.+|.--
T Consensus 24 ~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 5677788888887553 211000000 012457777777776432210 000001233 5777777766421
Q ss_pred ccccccccCCCCCCEEEEcCCC
Q 038559 81 RMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 81 ~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
..+|..+.++++|++|+++++.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHHccCCceeEEECCCCc
Confidence 2456666667777777776665
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.82 E-value=0.0048 Score=49.20 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=6.9
Q ss_pred CcccccEEEeccc
Q 038559 41 GFHKLEILIIAFH 53 (137)
Q Consensus 41 ~f~~Lk~L~l~~~ 53 (137)
.+++|++|++.++
T Consensus 291 ~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 291 FAAQIRKLDLLYA 303 (592)
T ss_dssp GGGGCCEEEETTC
T ss_pred hcCCCcEEecCCC
Confidence 3455555555543
No 140
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.75 E-value=0.012 Score=45.28 Aligned_cols=14 Identities=29% Similarity=0.152 Sum_probs=8.5
Q ss_pred CCCCCCEEEEcCCC
Q 038559 89 FVATLKQLQILPLL 102 (137)
Q Consensus 89 ~l~sL~~L~i~~~~ 102 (137)
.+++|+.|.+.+|.
T Consensus 250 ~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 250 RFPNLKWLGIVDAE 263 (362)
T ss_dssp TCTTCCEEEEESCT
T ss_pred CCCCcCEEeCCCCC
Confidence 35666666666654
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.61 E-value=0.02 Score=42.78 Aligned_cols=62 Identities=23% Similarity=0.251 Sum_probs=46.2
Q ss_pred cCcccccEEEecc-ccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCCCEEEEcCCC
Q 038559 40 GGFHKLEILIIAF-HVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPLL 102 (137)
Q Consensus 40 ~~f~~Lk~L~l~~-~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~~ 102 (137)
..+++|+.|+|.+ ..+.....-.-+.|++|+.|.+.+. ++..+|. .+.++++|+.|+++++.
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc
Confidence 3567899999986 4444322122467999999999876 5777765 56899999999998765
No 142
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=95.43 E-value=0.0024 Score=48.35 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=9.8
Q ss_pred ccccCCC-ccceeeeccc
Q 038559 10 LVIQLLP-NLKTLTLWLA 26 (137)
Q Consensus 10 ~~L~~Lp-~L~~L~L~~~ 26 (137)
..+..+| +|++|.|.++
T Consensus 44 ~~l~~~~~~L~~L~Ls~N 61 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGN 61 (362)
T ss_dssp HHHHTCCTTCCEEECCSS
T ss_pred HHHHhCCCceeEEECcCC
Confidence 3455566 6666666543
No 143
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=95.40 E-value=0.0029 Score=47.93 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=22.9
Q ss_pred ccCCCccceeeecccccceecccee--cCccCcc-cccEEEecccc
Q 038559 12 IQLLPNLKTLTLWLASKAKQLEKEF--CSVGGFH-KLEILIIAFHV 54 (137)
Q Consensus 12 L~~Lp~L~~L~L~~~~~~~~l~~~~--~~~~~f~-~Lk~L~l~~~~ 54 (137)
++..++|++|+|+++. +...+... -....++ +|++|++.++.
T Consensus 18 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 62 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS 62 (362)
T ss_dssp HTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC
T ss_pred HhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCC
Confidence 3444559999998654 32221100 0012455 78888887753
No 144
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.39 E-value=0.00061 Score=52.80 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=27.6
Q ss_pred CCccceEeeccCcccc-----cccccccCCCCCCEEEEcCCC
Q 038559 66 LPSLKYLQLHKCLKLR-----MLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 66 mp~L~~L~i~~c~~l~-----~lp~gl~~l~sL~~L~i~~~~ 102 (137)
.++|+.|.+.+|. +. .+|..+.++++|++|++++++
T Consensus 369 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 369 GSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 5688888888774 33 577777778888888888876
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.58 E-value=0.085 Score=39.17 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=48.8
Q ss_pred CCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCc---CCccc-eEeeccCcccccccc-cccC
Q 038559 15 LPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGA---LPSLK-YLQLHKCLKLRMLLE-DLQF 89 (137)
Q Consensus 15 Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~---mp~L~-~L~i~~c~~l~~lp~-gl~~ 89 (137)
+++|+.|+|.+.. +..++...|. ++++|+.+.+.+. .. .+..++ +++|+ .+.+.. +++.++. .+.+
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~--~~~~L~~l~l~~n--i~--~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFA--QKKYLLKIKLPHN--LK--TIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMG 295 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTT--TCTTCCEEECCTT--CC--EECTTTTTTCTTCCEEEEECT--TCCEECTTTTTT
T ss_pred cCCCeEEECCCCC-cceecHhhhh--CCCCCCEEECCcc--cc--eehHHHhhCChhccEEEEEcc--cceEEchhhhhC
Confidence 6788888887432 5555322332 5677888888762 21 344444 45566 666654 5666654 6778
Q ss_pred CCCCCEEEEcCC
Q 038559 90 VATLKQLQILPL 101 (137)
Q Consensus 90 l~sL~~L~i~~~ 101 (137)
+++|++|.+.+.
T Consensus 296 c~~L~~l~l~~n 307 (329)
T 3sb4_A 296 CDNLRYVLATGD 307 (329)
T ss_dssp CTTEEEEEECSS
T ss_pred CccCCEEEeCCC
Confidence 888888887553
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.53 E-value=0.11 Score=38.58 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=52.9
Q ss_pred ccccCCCccceeeecccccceeccceecCccCccccc-EEEeccccccceeeecCCc---CCccceEeeccCcccccccc
Q 038559 10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLE-ILIIAFHVLEEWTEIEEGA---LPSLKYLQLHKCLKLRMLLE 85 (137)
Q Consensus 10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk-~L~l~~~~~~~~~~~~~g~---mp~L~~L~i~~c~~l~~lp~ 85 (137)
..+..+++|+.|.|.+. +..++...|. ++++|+ .+.+.+ ... .++.++ +++|+.+.+.. .+++.++.
T Consensus 244 ~aF~~~~~L~~l~l~~n--i~~I~~~aF~--~~~~L~~~l~l~~-~l~---~I~~~aF~~c~~L~~l~l~~-n~i~~I~~ 314 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN--LKTIGQRVFS--NCGRLAGTLELPA-SVT---AIEFGAFMGCDNLRYVLATG-DKITTLGD 314 (329)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTT--TCTTCCEEEEECT-TCC---EECTTTTTTCTTEEEEEECS-SCCCEECT
T ss_pred hhhhCCCCCCEEECCcc--cceehHHHhh--CChhccEEEEEcc-cce---EEchhhhhCCccCCEEEeCC-CccCccch
Confidence 35678899999999753 5555322332 567788 888876 222 345554 56777777633 35777776
Q ss_pred -cccCCCCCCEEEE
Q 038559 86 -DLQFVATLKQLQI 98 (137)
Q Consensus 86 -gl~~l~sL~~L~i 98 (137)
.+.++++|+.|+.
T Consensus 315 ~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 315 ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTCCCCEEEC
T ss_pred hhhcCCcchhhhcc
Confidence 6788999998873
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.20 E-value=0.021 Score=42.21 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=40.0
Q ss_pred cCcccccEEEeccccccceeeec--CCcCCccceEeeccCcccccccccccCCC--CCCEEEEcCCC
Q 038559 40 GGFHKLEILIIAFHVLEEWTEIE--EGALPSLKYLQLHKCLKLRMLLEDLQFVA--TLKQLQILPLL 102 (137)
Q Consensus 40 ~~f~~Lk~L~l~~~~~~~~~~~~--~g~mp~L~~L~i~~c~~l~~lp~gl~~l~--sL~~L~i~~~~ 102 (137)
..||+|++|++++..+.....+. .+.+|+|+.|.+.+- ++..+. .+..+. +|++|.+.++|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCc
Confidence 36899999999986544321111 136899999999653 344442 233333 89999999887
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=92.74 E-value=0.0066 Score=46.67 Aligned_cols=37 Identities=22% Similarity=0.110 Sum_probs=18.9
Q ss_pred CCccceEeeccCcc----cccccccccCCCCCCEEEEcCCC
Q 038559 66 LPSLKYLQLHKCLK----LRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 66 mp~L~~L~i~~c~~----l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
+++|+.|.+.+|.- ...++.++.+.++|++|++++|.
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 45556665555431 11233445555566666666554
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.02 E-value=0.067 Score=39.48 Aligned_cols=82 Identities=20% Similarity=0.113 Sum_probs=46.2
Q ss_pred cCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCC--ccceEeeccCcccccccc-----
Q 038559 13 QLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALP--SLKYLQLHKCLKLRMLLE----- 85 (137)
Q Consensus 13 ~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp--~L~~L~i~~c~~l~~lp~----- 85 (137)
.++|+|+.|.|++.. +..+..-......||+|+.|++.+..+..+- +.+.+. +|+.|.+.+.+--..+|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCch--hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 357888888887432 3332100001136889999999875444321 112333 888888877663333431
Q ss_pred --cccCCCCCCEEE
Q 038559 86 --DLQFVATLKQLQ 97 (137)
Q Consensus 86 --gl~~l~sL~~L~ 97 (137)
-+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 245567777665
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=91.55 E-value=0.017 Score=44.33 Aligned_cols=88 Identities=13% Similarity=-0.057 Sum_probs=50.5
Q ss_pred CCCccceeeecccccceeccceecC--ccCcccccEEEeccccccce----eeecCCcCCccceEeeccCccc----ccc
Q 038559 14 LLPNLKTLTLWLASKAKQLEKEFCS--VGGFHKLEILIIAFHVLEEW----TEIEEGALPSLKYLQLHKCLKL----RML 83 (137)
Q Consensus 14 ~Lp~L~~L~L~~~~~~~~l~~~~~~--~~~f~~Lk~L~l~~~~~~~~----~~~~~g~mp~L~~L~i~~c~~l----~~l 83 (137)
..++|++|+|.++. +...+...+. -...++|++|++.++.+... +.......++|+.|.+.+|.-- ..+
T Consensus 153 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 153 DQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp TTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred cCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 35677777776543 2111000010 02467788888887543211 0001134678999999887521 235
Q ss_pred cccccCCCCCCEEEEcCCC
Q 038559 84 LEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 84 p~gl~~l~sL~~L~i~~~~ 102 (137)
...+...++|++|++++++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHCSSCCEEECTTSS
T ss_pred HHHHHhCCCCCEEeccCCC
Confidence 5566677889999998886
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=88.85 E-value=0.063 Score=36.88 Aligned_cols=92 Identities=16% Similarity=0.097 Sum_probs=51.2
Q ss_pred cccCCCccceeeecccccceeccceec--CccCcccccEEEeccccccce--eeec--CCcCCccceEeeccCcc----c
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFC--SVGGFHKLEILIIAFHVLEEW--TEIE--EGALPSLKYLQLHKCLK----L 80 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~--~~~~f~~Lk~L~l~~~~~~~~--~~~~--~g~mp~L~~L~i~~c~~----l 80 (137)
.+...++|++|.|.++..+..-+...+ .-...++|++|++.++.+... ..+. ....++|+.|.+.+|.- .
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 466788999999986511211000000 012357788888887543210 0000 02346788888877641 1
Q ss_pred ccccccccCCCCCCEEEE--cCCC
Q 038559 81 RMLLEDLQFVATLKQLQI--LPLL 102 (137)
Q Consensus 81 ~~lp~gl~~l~sL~~L~i--~~~~ 102 (137)
..+...+.+.++|++|++ .++.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHHHhCCCceEEEecCCCCC
Confidence 234556777778888888 5554
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=84.22 E-value=0.14 Score=35.07 Aligned_cols=91 Identities=10% Similarity=-0.058 Sum_probs=54.4
Q ss_pred cccCCCccceeeecccccceeccceecC--ccCcccccEEEeccccccce----eeecCCcCCccceEee--ccCcc---
Q 038559 11 VIQLLPNLKTLTLWLASKAKQLEKEFCS--VGGFHKLEILIIAFHVLEEW----TEIEEGALPSLKYLQL--HKCLK--- 79 (137)
Q Consensus 11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~--~~~f~~Lk~L~l~~~~~~~~----~~~~~g~mp~L~~L~i--~~c~~--- 79 (137)
.|...++|++|+|.++.-...- ...+. -...++|++|++.++.+... +.......++|+.|.+ ..+.-
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g-~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPV-AFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHH-HHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHhCCCcCEEECcCCCCChHH-HHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 4566799999999865411100 00010 01347899999998543211 0011134678999999 54431
Q ss_pred -cccccccccCCCCCCEEEEcCCC
Q 038559 80 -LRMLLEDLQFVATLKQLQILPLL 102 (137)
Q Consensus 80 -l~~lp~gl~~l~sL~~L~i~~~~ 102 (137)
...+...+...++|++|++.++.
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCcCEEeccCCC
Confidence 12244566677899999999886
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=80.07 E-value=5.1 Score=30.73 Aligned_cols=32 Identities=6% Similarity=0.092 Sum_probs=16.7
Q ss_pred CccceEeeccCcccccccc-cccCCCCCCEEEEcCC
Q 038559 67 PSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPL 101 (137)
Q Consensus 67 p~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~ 101 (137)
++|+.+.+.. +++.++. .+.++ +|++|.+.+.
T Consensus 323 ~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 323 RKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred CCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 4555555521 2444433 34555 6777777554
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=75.10 E-value=9.1 Score=29.29 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=18.6
Q ss_pred CCccceEeeccCcccccccc-cccCCCCCCEEEEc
Q 038559 66 LPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQIL 99 (137)
Q Consensus 66 mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~ 99 (137)
+++|+.+.+. .+++.++. .+.++++|+++.+.
T Consensus 299 c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 299 CPKLARFEIP--ESIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp CTTCCEECCC--TTCCEECTTTTTTCCSCCEEEEC
T ss_pred CccCCeEEeC--CceEEEhhhhhcCCCCccEEEEC
Confidence 3455555543 13455544 45677888888884
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=72.44 E-value=2.3 Score=27.36 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=17.1
Q ss_pred ccceeeecccccceeccceecCccCcccccEEEecc
Q 038559 17 NLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAF 52 (137)
Q Consensus 17 ~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~ 52 (137)
+|++|+|.+.. +..++.+.+ ..+++|+.|.|.+
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f--~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLL--DALPALRTAHLGA 64 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTG--GGCTTCCEEECCS
T ss_pred CCCEEECCCCc-CCccChhhh--hhccccCEEEecC
Confidence 57777776332 444422222 1456666666665
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=70.82 E-value=3.8 Score=26.34 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=16.7
Q ss_pred ccceEeeccCccccccccc-ccCCCCCCEEEEcCCC
Q 038559 68 SLKYLQLHKCLKLRMLLED-LQFVATLKQLQILPLL 102 (137)
Q Consensus 68 ~L~~L~i~~c~~l~~lp~g-l~~l~sL~~L~i~~~~ 102 (137)
+|+.|.+.+ .++..+|.+ +..+++|+.|++.+.|
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 455555543 234445443 3445555666655543
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=70.57 E-value=12 Score=28.02 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=30.8
Q ss_pred ccccEEEeccccccceeeecCCc---CCccceEeeccCcccccccc-cccCCCCCCEEEEcCCC
Q 038559 43 HKLEILIIAFHVLEEWTEIEEGA---LPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPLL 102 (137)
Q Consensus 43 ~~Lk~L~l~~~~~~~~~~~~~g~---mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~~ 102 (137)
.+|+.+.|... .. .+...+ ..+|+.+.|-. +++.+.. .+.++++|+++++.+..
T Consensus 311 ~~L~~i~lp~~--v~--~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 311 ISLKSIDIPEG--IT--QILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCCEEECCTT--CC--EECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCcCEEEeCCc--cc--EehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 45666666431 11 233333 34566666631 3555544 56788899999987754
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=66.76 E-value=16 Score=27.45 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=27.1
Q ss_pred cccccEEEeccccccceeeecCCcC---CccceEeeccCcccccccc-cccCCCCCCEEEEcC
Q 038559 42 FHKLEILIIAFHVLEEWTEIEEGAL---PSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILP 100 (137)
Q Consensus 42 f~~Lk~L~l~~~~~~~~~~~~~g~m---p~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~ 100 (137)
+.+|+.+.|.. ... .++.+|+ .+|+.+.+-. +++.++. .+.++++|+++.+..
T Consensus 319 c~~L~~i~lp~--~v~--~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 319 CTSLVSIDLPY--LVE--EIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTTCCEECCCT--TCC--EECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCCEEEeCC--ccc--EEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 34566666542 111 2344443 4455555421 2445543 456777888887743
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=61.67 E-value=12 Score=27.70 Aligned_cols=10 Identities=10% Similarity=0.272 Sum_probs=5.5
Q ss_pred CCCccceeee
Q 038559 14 LLPNLKTLTL 23 (137)
Q Consensus 14 ~Lp~L~~L~L 23 (137)
...+|+.+.+
T Consensus 238 ~~~~L~~i~l 247 (379)
T 4h09_A 238 GMKALDEIAI 247 (379)
T ss_dssp TCSSCCEEEE
T ss_pred CCccceEEEc
Confidence 4455665555
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=52.04 E-value=17 Score=27.20 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=29.1
Q ss_pred CcccccEEEeccccccceeeecCCc---CCccceEeeccCcccccccccccCCCCCCEE
Q 038559 41 GFHKLEILIIAFHVLEEWTEIEEGA---LPSLKYLQLHKCLKLRMLLEDLQFVATLKQL 96 (137)
Q Consensus 41 ~f~~Lk~L~l~~~~~~~~~~~~~g~---mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L 96 (137)
++.+|+.+.|... .. .++.+| .++|+.+.+-. +++.....+.+.++|+.+
T Consensus 341 ~c~~L~~i~lp~~--l~--~I~~~aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 341 GCTSLSNINFPLS--LR--KIGANAFQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCTTCCEECCCTT--CC--EECTTTBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred CCCCCCEEEECcc--cc--EehHHHhhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 3467888777531 21 344444 46788777742 344444566777777765
Done!