BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038563
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 120/199 (60%), Gaps = 11/199 (5%)
Query: 6 SDPDPVNDFCVLNRSSATTSL---PCKNSSLVTVEDFVFSGIKFRGKFSET--GLASIPV 60
SDPDP+ DFCV + S+ CK S +DF+FS + + T G A +
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAG-DDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 61 NVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFV---DTQNRIF 117
+V +PG NTLG+SM R DF GG N PH HPRATEI +V++G++ G + D+ N+++
Sbjct: 60 DVAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 118 AKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFDSQNPGLQKIPSAVFGSN--IKEELL 175
++V+ GE V PRGL+HFQ NVG T A ++ SF+SQNPG+ +P +FGS+ I +L
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 176 EKAFGLTPKEIAKLRKRFA 194
KA + + L+ +FA
Sbjct: 180 TKALRVEAGVVELLKSKFA 198
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 120/199 (60%), Gaps = 11/199 (5%)
Query: 6 SDPDPVNDFCVLNRSSATTSL---PCKNSSLVTVEDFVFSGIKFRGKFSET--GLASIPV 60
SDPDP+ DFCV + S+ CK S +DF+FS + + T G A +
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAG-DDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 61 NVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFV---DTQNRIF 117
+V +PG NTLG+SM R DF GG N PH HPRATEI +V++G++ G + D+ N+++
Sbjct: 60 DVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 118 AKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFDSQNPGLQKIPSAVFGSN--IKEELL 175
++V+ GE V PRGL+HFQ NVG T A ++ SF+SQNPG+ +P +FGS+ I +L
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 176 EKAFGLTPKEIAKLRKRFA 194
KA + + L+ +FA
Sbjct: 180 TKALRVEAGVVELLKSKFA 198
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 120/199 (60%), Gaps = 11/199 (5%)
Query: 6 SDPDPVNDFCVLNRSSATTSL---PCKNSSLVTVEDFVFSGIKFRGKFSET--GLASIPV 60
+DPDP+ DFCV + S+ CK S +DF+FS + + T G A +
Sbjct: 1 TDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAG-DDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 61 NVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFV---DTQNRIF 117
+V +PG NTLG+SM R DF GG N PH HPRATEI +V++G++ G + D+ N+++
Sbjct: 60 DVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 118 AKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFDSQNPGLQKIPSAVFGSN--IKEELL 175
++V+ GE V PRGL+HFQ NVG T A ++ SF+SQNPG+ +P +FGS+ I +L
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 176 EKAFGLTPKEIAKLRKRFA 194
KA + + L+ +FA
Sbjct: 180 TKALRVEAGVVELLKSKFA 198
>pdb|3C3V|A Chain A, Crystal Structure Of Peanut Major Allergen Ara H 3
Length = 510
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 68 LNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQ-NRIFAKVIEKGEV 126
L LG+S + + VPH++ A I L G+ + VD+ NR++ + +++G V
Sbjct: 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHV 426
Query: 127 MVFPRGLVHFQMNVGDTWATILGSFDSQNPGLQKI--PSAVFGSNIKEELLEKAFGLTPK 184
+V P+ + D + + DS+ P + + ++V N+ EE++ ++GL P+
Sbjct: 427 LVVPQNFAVAGKSQSDNFEYVAFKTDSR-PSIANLAGENSVI-DNLPEEVVANSYGL-PR 483
Query: 185 EIAKLRKRFAP 195
E A+ K P
Sbjct: 484 EQARQLKNNNP 494
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Query: 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPR 131
GM+ V + G + H+H A E A V+EG+ + ++ ++KG + FPR
Sbjct: 51 GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPR 110
Query: 132 GLVHFQMNVGDTWATILGSFDSQNPGLQKIPSAV-FGSNIKEELLEKAFGLTPKEIAKLR 190
G H +G A L F+ S + S+ +E+ G T ++A+L
Sbjct: 111 GWGHSIEGIGPDTAKFLLVFNDGTFSEGATFSVTDWLSHTPIAWVEENLGWTAAQVAQLP 170
Query: 191 KR 192
K+
Sbjct: 171 KK 172
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 65 FPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKG 124
FPG + M+ + G + H+HP A E VL+G++ ++ + +++G
Sbjct: 228 FPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQG 285
Query: 125 EVMVFPRGLVHFQMNVGDTWATILGSFDSQNPGLQKIPSAVFGSNIKEELLEKAFGLTPK 184
+V P+G H N I+ F+ + Q I + + ++ +L F ++P+
Sbjct: 286 DVGYVPKGYGHAIRNSSQKPLDIVVVFNDGD--YQSIDLSTWLASNPSSVLGNTFQISPE 343
Query: 185 EIAKL 189
KL
Sbjct: 344 LTKKL 348
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 19/136 (13%)
Query: 65 FPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQ-NRIFAKVIEK 123
FP L+ L +S + VPH++ A I L G+ V+ R+F +++
Sbjct: 330 FPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQE 389
Query: 124 GEVMVFPRGLVHFQMNVGDTWATI---------LGSFDSQNPGLQKIPSAVFGSNIKEEL 174
G V++ P+ V + D + + +G+ N L +P EE+
Sbjct: 390 GRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLNALP---------EEV 440
Query: 175 LEKAFGLTPKEIAKLR 190
++ F L ++ +++
Sbjct: 441 IQHTFNLKSQQARQIK 456
>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|B Chain B, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|C Chain C, Crystal Structure Of Proglycinin Mutant C88s
Length = 476
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 19/136 (13%)
Query: 65 FPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQ-NRIFAKVIEK 123
FP L+ L +S + VPH++ A I L G+ V+ R+F +++
Sbjct: 330 FPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQE 389
Query: 124 GEVMVFPRGLVHFQMNVGDTWATI---------LGSFDSQNPGLQKIPSAVFGSNIKEEL 174
G V++ P+ V + D + + +G+ N L +P EE+
Sbjct: 390 GRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLNALP---------EEV 440
Query: 175 LEKAFGLTPKEIAKLR 190
++ F L ++ +++
Sbjct: 441 IQHTFNLKSQQARQIK 456
>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|B Chain B, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|C Chain C, Crystal Structure Of Proglycinin C12g Mutant
Length = 476
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 19/136 (13%)
Query: 65 FPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQ-NRIFAKVIEK 123
FP L+ L +S + VPH++ A I L G+ V+ R+F +++
Sbjct: 330 FPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQE 389
Query: 124 GEVMVFPRGLVHFQMNVGDTWATI---------LGSFDSQNPGLQKIPSAVFGSNIKEEL 174
G V++ P+ V + D + + +G+ N L +P EE+
Sbjct: 390 GRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLNALP---------EEV 440
Query: 175 LEKAFGLTPKEIAKLR 190
++ F L ++ +++
Sbjct: 441 IQHTFNLKSQQARQIK 456
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 60 VNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQ-NRIFA 118
+N P L G+S G+ PH++ A + V GK V+ Q N +F
Sbjct: 353 LNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFD 412
Query: 119 KVIEKGEVMVFPRGLV 134
+ +G+++V P+ V
Sbjct: 413 GELRRGQLLVVPQNFV 428
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 60 VNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQ-NRIFA 118
+N P L G+S G+ PH++ A + V GK V+ Q N +F
Sbjct: 354 LNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNXQGNAVFD 413
Query: 119 KVIEKGEVMVFPRGLV 134
+ +G+++V P+ V
Sbjct: 414 GELRRGQLLVVPQNFV 429
>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|B Chain B, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|D Chain D, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|F Chain F, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 184
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 83 GGVNVPHFHPRATEIAVVLEGKIYSGFV-----------DTQNRIFAKVIEKGEVMVFP 130
G + VPH++ RAT I V EG+ V Q R +A + +G+++V P
Sbjct: 51 GALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIP 109
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 18/74 (24%)
Query: 68 LNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFV-----------DTQNRI 116
LN L M + G + VPH++ RAT I V EG+ V Q R
Sbjct: 283 LNCLQM-------NEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRR 335
Query: 117 FAKVIEKGEVMVFP 130
+A + +G+++V P
Sbjct: 336 YAATLSEGDIIVIP 349
>pdb|3Q1H|A Chain A, Crystal Structure Of Dihydrofolate Reductase From Yersinia
Pestis
Length = 163
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 90 FHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILG 149
F A E+ V+ G++Y F+D NR++ I+ EV G HF D W ++
Sbjct: 88 FAGNAEEVMVMGGGRVYKQFLDRANRMYLTHID-AEV----GGDTHFPDYEPDEWESVFS 142
Query: 150 SF 151
F
Sbjct: 143 EF 144
>pdb|2CV6|A Chain A, Crystal Structure Of 8salpha Globulin, The Major Seed
Storage Protein Of Mungbean
Length = 424
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 66 PGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGK 104
P L L M + D G + +PH++ +A I V+ EGK
Sbjct: 254 PQLRDLDMFIRSVDMKEGSLLLPHYNSKAIVILVINEGK 292
>pdb|1VR3|A Chain A, Crystal Structure Of Acireductone Dioxygenase (13543033)
From Mus Musculus At 2.06 A Resolution
Length = 191
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 89 HFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVH 135
H H EI +LEG Y D +++ EKG+ + P G+ H
Sbjct: 100 HLH-LDEEIRYILEGSGYFDVRDKEDKWIRISXEKGDXITLPAGIYH 145
>pdb|3LJL|A Chain A, The Crystal Structure Of The Full-Length Transcriptional
Regulator Luxt From Vibrio Parahaemolyticus Rimd
2210633.
pdb|3LJL|B Chain B, The Crystal Structure Of The Full-Length Transcriptional
Regulator Luxt From Vibrio Parahaemolyticus Rimd 2210633
Length = 156
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 82 VGGVNVPHFHPRATEIAVVLEGKIYSGFV---------DTQNRIFAKVIEKGEVMVFPRG 132
V + H P+ T+ L+G+I+ F+ D ++ + K +E E + R
Sbjct: 46 VSRTGISHHFPKKTDFTAALDGRIFKXFIEHLEFEKGLDAFSQSWIKALEDSEFLAILRL 105
Query: 133 LVH 135
L H
Sbjct: 106 LFH 108
>pdb|4DIQ|A Chain A, Crystal Structure Of Human No66
pdb|4DIQ|B Chain B, Crystal Structure Of Human No66
Length = 489
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 90 FHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVH 135
+ PRA + L D + V+E G+++ FPRG +H
Sbjct: 201 YRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIH 246
>pdb|4E4H|A Chain A, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|B Chain B, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|C Chain C, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|D Chain D, Crystal Structure Of Histone Demethylase No66
Length = 463
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 90 FHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVH 135
+ PRA + L D + V+E G+++ FPRG +H
Sbjct: 182 YRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIH 227
>pdb|1O5U|A Chain A, Crystal Structure Of A Duf861 Family Protein (Tm1112) From
Thermotoga Maritima At 1.83 A Resolution
pdb|1O5U|B Chain B, Crystal Structure Of A Duf861 Family Protein (Tm1112) From
Thermotoga Maritima At 1.83 A Resolution
Length = 101
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 90 FHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGL 133
++ E +LEGK+ D + VIEKG+++ FP+GL
Sbjct: 45 WYYDTNETCYILEGKVEVTTEDGKKY----VIEKGDLVTFPKGL 84
>pdb|1LKN|A Chain A, Solution Nmr Structure Of Protein Tm_1112 From Thermotoga
Maritima. Ontario Centre For Structural Proteomics
Target Tm1112_1_89; Northeast Structural Genomics
Consortium Target Vt74.
pdb|2K9Z|A Chain A, Nmr Structure Of The Protein Tm1112
Length = 89
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 90 FHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGL 133
++ E +LEGK+ D + VIEKG+++ FP+GL
Sbjct: 33 WYYDTNETCYILEGKVEVTTEDGKKY----VIEKGDLVTFPKGL 72
>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|B Chain B, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|C Chain C, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|D Chain D, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|E Chain E, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|F Chain F, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L
Length = 496
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 65 FPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQ-NRIFAKVIEK 123
P L L +S + VPH++ A I L+G+ V+ N +F +E
Sbjct: 350 LPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEA 409
Query: 124 GEVMVFPRGLVHFQMNVGDTWATI 147
G + P+ ++ D ++ +
Sbjct: 410 GRALTVPQNYAVAAKSLSDRFSYV 433
>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|B Chain B, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|C Chain C, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|1PHS|A Chain A, The Three-Dimensional Structure Of The Seed Storage
Protein Phaseolin At 3 Angstroms Resolution
Length = 397
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 69 NTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFV 110
N+L + + + + G + VPH++ +A I VV EG+ + V
Sbjct: 235 NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELV 276
>pdb|2F4P|A Chain A, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
pdb|2F4P|B Chain B, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
pdb|2F4P|C Chain C, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
pdb|2F4P|D Chain D, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
Length = 147
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 80 FDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMN 139
F+ G H HP +I +V GK GF + + A++++KG+V+ P +VH+
Sbjct: 55 FEPGARTHWHSHP-GGQILIVTRGK---GFYQERGKP-ARILKKGDVVEIPPNVVHWHGA 109
Query: 140 VGDTWATILGSFDSQNPGLQKIPSAVFGSNIKEELLEKAFG 180
D +G + G P+ GS +EE + G
Sbjct: 110 APDEELVHIGISTQVHLG----PAEWLGSVTEEEYRKATEG 146
>pdb|1UIK|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
Length = 418
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 66 PGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGK 104
P L L + + D + G + +PHF+ +A + V+ EG+
Sbjct: 244 PQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGE 282
>pdb|2BA0|I Chain I, Archaeal Exosome Core
pdb|2BA0|H Chain H, Archaeal Exosome Core
pdb|2BA0|G Chain G, Archaeal Exosome Core
pdb|2BA1|G Chain G, Archaeal Exosome Core
pdb|2BA1|H Chain H, Archaeal Exosome Core
pdb|2BA1|I Chain I, Archaeal Exosome Core
pdb|3M7N|G Chain G, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
pdb|3M7N|H Chain H, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
pdb|3M7N|I Chain I, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
Length = 259
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 137 QMNVGDTWATILGSFDSQNPGLQKIPSAVFGSNIKEELLEKAFGLTPKEIAKLRKRF 193
+M+VGDT TI D +QK + + +ELL+ + KLR++F
Sbjct: 204 EMSVGDTTLTITTDKDDNVVAMQKSGGYLLDEKLFDELLDVSINCA----RKLREKF 256
>pdb|3M85|G Chain G, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
pdb|3M85|H Chain H, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
pdb|3M85|I Chain I, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 259
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 137 QMNVGDTWATILGSFDSQNPGLQKIPSAVFGSNIKEELLEKAFGLTPKEIAKLRKRF 193
+M+VGDT TI D +QK + + +ELL+ + KLR++F
Sbjct: 204 EMSVGDTTLTITTDKDDNVVAMQKSGGYLLDEKLFDELLDVSINCA----RKLREKF 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,823,964
Number of Sequences: 62578
Number of extensions: 229534
Number of successful extensions: 647
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 31
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)