Query 038563
Match_columns 198
No_of_seqs 199 out of 1624
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 12:19:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 100.0 2.3E-29 5.1E-34 222.3 21.2 164 25-193 200-363 (367)
2 TIGR03404 bicupin_oxalic bicup 99.9 1.4E-24 3E-29 192.0 18.2 135 52-192 48-185 (367)
3 PF00190 Cupin_1: Cupin; Inte 99.9 1E-24 2.3E-29 169.2 15.2 124 52-186 12-143 (144)
4 PLN00212 glutelin; Provisional 99.9 1.4E-24 3E-29 196.9 18.4 145 48-194 322-470 (493)
5 smart00835 Cupin_1 Cupin. This 99.9 1.5E-21 3.1E-26 151.9 17.3 133 52-186 9-145 (146)
6 PLN00212 glutelin; Provisional 99.8 3.2E-20 7E-25 168.6 16.1 138 52-192 60-249 (493)
7 COG2140 Thermophilic glucose-6 99.8 1.1E-19 2.4E-24 147.6 12.8 151 35-194 49-201 (209)
8 PF07883 Cupin_2: Cupin domain 99.6 3.5E-14 7.5E-19 96.3 10.3 70 77-151 2-71 (71)
9 COG1917 Uncharacterized conser 99.5 9.7E-13 2.1E-17 100.2 11.1 85 64-153 34-118 (131)
10 PRK13290 ectC L-ectoine syntha 99.4 1.5E-12 3.2E-17 99.1 11.8 81 71-158 33-114 (125)
11 PRK04190 glucose-6-phosphate i 99.4 2.3E-12 5.1E-17 104.6 13.6 89 66-154 61-157 (191)
12 COG0662 {ManC} Mannose-6-phosp 99.4 1.9E-12 4.2E-17 98.6 11.8 81 72-157 35-115 (127)
13 COG4101 Predicted mannose-6-ph 99.3 3.5E-11 7.6E-16 89.7 9.2 85 72-158 45-129 (142)
14 COG3837 Uncharacterized conser 99.2 5.8E-11 1.3E-15 92.4 9.8 84 64-154 35-121 (161)
15 PRK11171 hypothetical protein; 99.2 3.7E-10 8E-15 96.2 14.7 108 31-152 28-136 (266)
16 TIGR01479 GMP_PMI mannose-1-ph 99.2 1.2E-10 2.5E-15 106.5 12.3 78 72-154 375-452 (468)
17 PRK09943 DNA-binding transcrip 99.2 2.3E-10 5.1E-15 92.1 11.7 76 71-152 105-181 (185)
18 PRK15460 cpsB mannose-1-phosph 99.2 2.8E-10 6.1E-15 104.1 12.0 77 72-153 384-460 (478)
19 PF01050 MannoseP_isomer: Mann 99.1 1.1E-09 2.3E-14 86.0 12.7 76 72-152 62-137 (151)
20 TIGR03214 ura-cupin putative a 99.1 9.8E-10 2.1E-14 93.3 10.7 72 72-149 178-250 (260)
21 PRK11171 hypothetical protein; 99.0 3.4E-09 7.3E-14 90.3 11.3 75 72-152 183-258 (266)
22 TIGR03214 ura-cupin putative a 99.0 3.9E-09 8.5E-14 89.7 11.4 76 72-152 57-133 (260)
23 PF02041 Auxin_BP: Auxin bindi 99.0 9.6E-09 2.1E-13 79.5 11.7 93 72-166 43-140 (167)
24 PF06560 GPI: Glucose-6-phosph 98.8 5E-08 1.1E-12 78.6 11.5 83 71-153 48-146 (182)
25 PRK13264 3-hydroxyanthranilate 98.7 1.6E-07 3.5E-12 75.1 10.2 70 79-152 40-109 (177)
26 TIGR03037 anthran_nbaC 3-hydro 98.7 1.8E-07 3.9E-12 73.7 9.1 66 81-150 36-101 (159)
27 PF12973 Cupin_7: ChrR Cupin-l 98.6 5.5E-07 1.2E-11 64.5 10.7 82 52-149 7-88 (91)
28 PF11699 CENP-C_C: Mif2/CENP-C 98.6 9.9E-07 2.1E-11 62.8 11.0 72 72-149 11-83 (85)
29 PF03079 ARD: ARD/ARD' family; 98.6 7.8E-07 1.7E-11 70.3 11.1 71 86-158 85-155 (157)
30 PF02311 AraC_binding: AraC-li 98.6 6E-07 1.3E-11 66.4 9.9 65 82-152 12-76 (136)
31 TIGR02451 anti_sig_ChrR anti-s 98.5 5.5E-07 1.2E-11 74.6 8.3 72 73-154 127-198 (215)
32 PF14499 DUF4437: Domain of un 98.5 6.7E-07 1.4E-11 75.5 8.6 105 33-148 2-106 (251)
33 PRK15457 ethanolamine utilizat 98.5 2.6E-06 5.7E-11 70.7 11.8 70 72-151 156-225 (233)
34 COG1791 Uncharacterized conser 98.4 3.1E-06 6.7E-11 67.0 9.9 74 87-162 89-162 (181)
35 PRK10371 DNA-binding transcrip 98.4 1.4E-06 3.1E-11 75.2 8.3 59 78-142 31-89 (302)
36 PF06339 Ectoine_synth: Ectoin 98.3 1E-05 2.2E-10 61.1 11.1 83 69-157 31-113 (126)
37 TIGR02272 gentisate_1_2 gentis 98.2 5.8E-06 1.3E-10 72.6 9.1 76 72-152 80-155 (335)
38 PF05523 FdtA: WxcM-like, C-te 98.2 4.4E-05 9.6E-10 58.5 12.8 97 53-154 14-112 (131)
39 PRK10296 DNA-binding transcrip 98.2 1.1E-05 2.4E-10 68.2 10.0 52 83-140 33-84 (278)
40 PF05899 Cupin_3: Protein of u 98.1 3E-05 6.5E-10 53.5 8.1 59 73-138 7-65 (74)
41 PRK13501 transcriptional activ 98.1 1.4E-05 3E-10 68.2 7.8 62 72-141 19-80 (290)
42 COG4297 Uncharacterized protei 98.0 9.2E-06 2E-10 62.3 5.5 64 86-152 56-119 (163)
43 TIGR02297 HpaA 4-hydroxyphenyl 98.0 2E-05 4.3E-10 66.8 7.3 58 83-145 33-90 (287)
44 PRK13500 transcriptional activ 98.0 3.2E-05 6.9E-10 67.0 8.3 53 84-142 59-111 (312)
45 COG3435 Gentisate 1,2-dioxygen 97.9 1.6E-05 3.5E-10 68.3 5.8 91 57-152 71-166 (351)
46 PRK13502 transcriptional activ 97.9 4.3E-05 9.4E-10 64.7 7.4 56 81-142 26-81 (282)
47 KOG2107 Uncharacterized conser 97.9 3.4E-05 7.4E-10 60.8 5.9 57 86-143 86-142 (179)
48 PRK13503 transcriptional activ 97.8 4.4E-05 9.5E-10 64.3 6.8 53 82-140 24-76 (278)
49 PF06052 3-HAO: 3-hydroxyanthr 97.8 0.00028 6.1E-09 54.9 10.5 77 77-157 37-113 (151)
50 COG3257 GlxB Uncharacterized p 97.8 0.0002 4.4E-09 59.0 9.0 75 73-152 61-136 (264)
51 PF06249 EutQ: Ethanolamine ut 97.6 0.0005 1.1E-08 54.0 9.1 60 72-139 76-135 (152)
52 COG1898 RfbC dTDP-4-dehydrorha 97.6 0.0011 2.3E-08 53.2 10.3 68 82-149 54-130 (173)
53 TIGR02272 gentisate_1_2 gentis 97.5 0.00037 8.1E-09 61.3 8.2 87 53-149 231-318 (335)
54 PF00908 dTDP_sugar_isom: dTDP 97.3 0.0028 6E-08 51.0 10.3 69 80-148 50-129 (176)
55 COG3450 Predicted enzyme of th 97.3 0.00086 1.9E-08 50.3 6.2 60 72-138 44-103 (116)
56 PF05995 CDO_I: Cysteine dioxy 97.2 0.0089 1.9E-07 47.9 11.9 83 72-154 74-165 (175)
57 TIGR01221 rmlC dTDP-4-dehydror 97.2 0.0045 9.8E-08 49.8 9.9 69 81-149 52-130 (176)
58 PF04209 HgmA: homogentisate 1 97.0 0.016 3.6E-07 52.5 12.5 110 34-152 86-199 (424)
59 PF13621 Cupin_8: Cupin-like d 97.0 0.0084 1.8E-07 49.2 9.8 68 76-144 133-236 (251)
60 COG4766 EutQ Ethanolamine util 96.8 0.009 2E-07 46.8 8.1 62 73-142 100-161 (176)
61 PRK05341 homogentisate 1,2-dio 96.4 0.023 5.1E-07 51.5 9.2 59 86-150 146-204 (438)
62 PF07385 DUF1498: Protein of u 96.4 0.049 1.1E-06 45.2 10.2 74 77-152 91-187 (225)
63 PF02678 Pirin: Pirin; InterP 96.2 0.043 9.4E-07 40.6 8.3 61 83-148 39-103 (107)
64 PF14499 DUF4437: Domain of un 96.2 0.019 4E-07 48.7 7.0 92 52-152 154-245 (251)
65 COG3435 Gentisate 1,2-dioxygen 96.2 0.018 3.9E-07 49.9 6.8 91 52-150 241-331 (351)
66 TIGR01015 hmgA homogentisate 1 96.0 0.043 9.4E-07 49.7 8.9 62 86-152 140-201 (429)
67 PLN02658 homogentisate 1,2-dio 96.0 0.05 1.1E-06 49.4 9.1 58 86-149 139-196 (435)
68 PF13759 2OG-FeII_Oxy_5: Putat 95.9 0.058 1.2E-06 38.9 7.8 71 78-148 5-98 (101)
69 PF08007 Cupin_4: Cupin superf 95.7 0.15 3.3E-06 44.5 10.9 77 74-152 114-210 (319)
70 PF05118 Asp_Arg_Hydrox: Aspar 95.5 0.18 3.9E-06 39.8 9.8 71 74-149 81-156 (163)
71 PF07847 DUF1637: Protein of u 95.5 0.1 2.2E-06 42.8 8.4 81 72-153 43-143 (200)
72 COG3806 ChrR Transcriptional a 95.4 0.05 1.1E-06 44.4 6.3 72 72-153 127-198 (216)
73 PF12852 Cupin_6: Cupin 95.3 0.13 2.9E-06 40.8 8.6 45 95-142 36-80 (186)
74 PRK10572 DNA-binding transcrip 95.3 0.08 1.7E-06 44.9 7.5 49 88-142 44-92 (290)
75 PF06865 DUF1255: Protein of u 95.2 0.25 5.5E-06 35.7 8.7 65 79-151 29-93 (94)
76 PRK10579 hypothetical protein; 95.0 0.51 1.1E-05 34.1 9.7 63 80-150 30-92 (94)
77 COG3822 ABC-type sugar transpo 94.8 0.14 3.1E-06 41.6 7.2 74 78-153 91-187 (225)
78 TIGR02466 conserved hypothetic 94.7 0.18 4E-06 41.3 7.8 72 74-145 97-191 (201)
79 PRK09685 DNA-binding transcrip 94.7 0.32 6.9E-06 41.3 9.6 66 72-142 44-114 (302)
80 COG5553 Predicted metal-depend 94.6 0.13 2.8E-06 40.8 6.4 70 73-144 73-148 (191)
81 COG1741 Pirin-related protein 94.4 0.12 2.7E-06 44.4 6.5 58 78-140 49-109 (276)
82 PF05726 Pirin_C: Pirin C-term 94.4 0.37 8E-06 35.0 8.2 69 76-152 2-70 (104)
83 PRK12335 tellurite resistance 94.3 0.23 5E-06 42.4 8.0 61 82-142 20-83 (287)
84 PF02373 JmjC: JmjC domain, hy 94.3 0.1 2.2E-06 37.7 5.0 29 115-143 79-107 (114)
85 COG3508 HmgA Homogentisate 1,2 94.1 0.35 7.6E-06 42.9 8.6 71 72-149 124-195 (427)
86 PRK00924 5-keto-4-deoxyuronate 93.6 0.44 9.6E-06 41.0 8.2 82 72-155 174-261 (276)
87 PF06172 Cupin_5: Cupin superf 93.6 2.7 5.8E-05 32.5 13.5 85 72-159 40-131 (139)
88 KOG3995 3-hydroxyanthranilate 93.4 0.21 4.6E-06 41.3 5.6 62 80-143 40-101 (279)
89 PRK09391 fixK transcriptional 93.1 1.4 3.1E-05 36.1 10.4 76 72-148 35-111 (230)
90 PF09313 DUF1971: Domain of un 92.5 0.95 2.1E-05 31.9 7.3 47 97-143 28-76 (82)
91 KOG3706 Uncharacterized conser 92.1 0.071 1.5E-06 49.0 1.4 62 78-140 321-404 (629)
92 PF04962 KduI: KduI/IolB famil 92.1 6.9 0.00015 33.4 13.8 97 55-155 135-247 (261)
93 PF14525 AraC_binding_2: AraC- 91.4 2.9 6.3E-05 31.7 9.7 66 72-142 33-98 (172)
94 PF11142 DUF2917: Protein of u 91.3 1.2 2.5E-05 29.7 6.3 57 78-139 2-58 (63)
95 PF00027 cNMP_binding: Cyclic 91.2 1.2 2.6E-05 29.9 6.7 49 78-127 2-51 (91)
96 COG3257 GlxB Uncharacterized p 90.9 1.1 2.5E-05 37.3 7.1 77 66-148 175-252 (264)
97 PRK15131 mannose-6-phosphate i 90.9 2 4.3E-05 38.7 9.4 58 73-138 321-378 (389)
98 PLN02288 mannose-6-phosphate i 90.5 1.1 2.4E-05 40.5 7.3 58 72-133 333-390 (394)
99 PRK11753 DNA-binding transcrip 90.3 4.3 9.3E-05 32.3 10.0 53 76-129 21-74 (211)
100 TIGR00218 manA mannose-6-phosp 90.1 2.9 6.2E-05 36.2 9.4 59 72-138 234-292 (302)
101 KOG2757 Mannose-6-phosphate is 88.8 3.4 7.4E-05 37.0 8.8 80 65-152 327-406 (411)
102 PRK13918 CRP/FNR family transc 88.7 2.5 5.3E-05 33.5 7.5 54 77-130 8-63 (202)
103 COG2850 Uncharacterized conser 86.8 1.1 2.4E-05 40.0 4.6 61 79-140 125-202 (383)
104 PRK03606 ureidoglycolate hydro 86.7 6 0.00013 31.4 8.4 79 72-150 55-140 (162)
105 PRK00924 5-keto-4-deoxyuronate 86.2 6.8 0.00015 33.8 9.0 53 93-150 72-127 (276)
106 PF04115 Ureidogly_hydro: Urei 86.2 11 0.00023 29.9 9.6 82 72-153 56-146 (165)
107 PLN02868 acyl-CoA thioesterase 85.3 4 8.7E-05 36.7 7.7 53 76-129 32-84 (413)
108 COG3123 Uncharacterized protei 84.4 3.9 8.4E-05 29.0 5.5 44 92-138 39-82 (94)
109 smart00100 cNMP Cyclic nucleot 83.6 9.7 0.00021 26.0 7.7 54 76-130 18-72 (120)
110 PRK10402 DNA-binding transcrip 80.6 6.9 0.00015 31.9 6.7 52 78-130 34-86 (226)
111 cd00038 CAP_ED effector domain 80.3 9.5 0.00021 26.0 6.6 53 76-129 18-71 (115)
112 PHA02984 hypothetical protein; 79.1 19 0.0004 31.0 8.8 61 94-156 91-154 (286)
113 PF04962 KduI: KduI/IolB famil 77.4 16 0.00034 31.2 8.1 69 73-148 27-103 (261)
114 PRK09392 ftrB transcriptional 77.0 18 0.00038 29.4 8.1 52 77-129 32-83 (236)
115 PRK10202 ebgC cryptic beta-D-g 77.0 12 0.00027 29.0 6.8 52 87-138 58-127 (149)
116 PHA02890 hypothetical protein; 76.1 27 0.00057 29.9 8.8 58 95-156 91-151 (278)
117 PRK15186 AraC family transcrip 75.8 11 0.00024 32.5 6.8 47 95-145 39-85 (291)
118 COG1482 ManA Phosphomannose is 75.7 24 0.00052 31.0 8.9 58 72-137 241-298 (312)
119 KOG3416 Predicted nucleic acid 74.8 14 0.0003 28.2 6.2 65 66-139 12-80 (134)
120 PF13640 2OG-FeII_Oxy_3: 2OG-F 74.8 21 0.00045 24.9 7.0 63 78-140 4-86 (100)
121 PRK13395 ureidoglycolate hydro 73.5 28 0.00061 27.8 8.1 80 72-151 55-142 (171)
122 TIGR00218 manA mannose-6-phosp 73.0 1.9 4.2E-05 37.3 1.4 19 118-136 152-170 (302)
123 PRK11161 fumarate/nitrate redu 72.6 38 0.00081 27.4 9.0 51 78-129 40-91 (235)
124 TIGR03697 NtcA_cyano global ni 71.5 10 0.00023 29.5 5.3 36 94-129 11-47 (193)
125 COG0664 Crp cAMP-binding prote 71.4 19 0.00041 27.9 6.8 57 74-131 22-79 (214)
126 PF04622 ERG2_Sigma1R: ERG2 an 71.3 19 0.0004 30.0 6.8 52 83-140 111-162 (216)
127 COG2731 EbgC Beta-galactosidas 69.2 17 0.00037 28.6 5.8 58 85-142 60-137 (154)
128 PRK02290 3-dehydroquinate synt 68.6 47 0.001 29.6 9.0 84 52-139 250-336 (344)
129 COG1482 ManA Phosphomannose is 68.5 4.5 9.6E-05 35.5 2.7 22 118-139 159-180 (312)
130 KOG1417 Homogentisate 1,2-diox 68.4 84 0.0018 27.7 11.5 63 86-153 147-209 (446)
131 PF04074 DUF386: Domain of unk 67.9 36 0.00079 26.2 7.5 53 86-138 61-134 (153)
132 TIGR00022 uncharacterized prot 67.2 15 0.00033 28.1 5.2 26 85-110 60-85 (142)
133 PRK15131 mannose-6-phosphate i 65.0 6.9 0.00015 35.3 3.3 23 117-139 237-259 (389)
134 COG3717 KduI 5-keto 4-deoxyuro 63.1 29 0.00062 29.4 6.3 85 69-155 173-263 (278)
135 KOG2130 Phosphatidylserine-spe 62.1 12 0.00026 33.0 4.1 45 115-159 261-305 (407)
136 KOG2131 Uncharacterized conser 62.0 7.5 0.00016 34.9 2.8 63 79-143 203-294 (427)
137 COG3542 Uncharacterized conser 59.6 85 0.0019 24.7 13.1 104 76-189 47-159 (162)
138 COG3718 IolB Uncharacterized e 59.0 77 0.0017 26.9 8.1 86 54-143 13-103 (270)
139 KOG4281 Uncharacterized conser 57.9 5.7 0.00012 33.0 1.3 39 72-110 74-112 (236)
140 PF01959 DHQS: 3-dehydroquinat 55.2 1.1E+02 0.0024 27.4 9.0 85 52-140 260-347 (354)
141 PF13464 DUF4115: Domain of un 54.4 64 0.0014 21.7 7.2 47 100-147 4-51 (77)
142 PF14801 GCD14_N: tRNA methylt 52.5 34 0.00073 22.2 3.9 36 106-141 11-46 (54)
143 PLN03192 Voltage-dependent pot 51.9 42 0.00091 33.1 6.5 53 74-127 396-448 (823)
144 KOG0500 Cyclic nucleotide-gate 48.7 35 0.00077 31.8 5.0 52 73-127 328-379 (536)
145 KOG0498 K+-channel ERG and rel 44.3 50 0.0011 32.4 5.5 48 79-127 446-493 (727)
146 PF06719 AraC_N: AraC-type tra 41.9 1.6E+02 0.0034 22.6 9.4 52 94-150 23-77 (155)
147 PF13384 HTH_23: Homeodomain-l 41.8 35 0.00076 20.6 2.9 28 169-196 17-44 (50)
148 PF13348 Y_phosphatase3C: Tyro 41.4 26 0.00056 22.9 2.3 24 170-193 44-67 (68)
149 PF02787 CPSase_L_D3: Carbamoy 39.0 36 0.00078 25.6 3.0 26 169-194 72-97 (123)
150 PRK14585 pgaD putative PGA bio 38.9 36 0.00078 26.3 3.0 25 168-192 88-112 (137)
151 PLN02288 mannose-6-phosphate i 37.4 27 0.00058 31.6 2.5 21 118-138 252-272 (394)
152 PF02796 HTH_7: Helix-turn-hel 36.9 46 0.00099 20.1 2.8 28 164-191 16-43 (45)
153 COG1465 Predicted alternative 35.6 2E+02 0.0043 25.4 7.2 56 73-128 299-355 (376)
154 PF00325 Crp: Bacterial regula 34.7 38 0.00083 19.4 2.0 27 170-196 3-29 (32)
155 PF05962 HutD: HutD; InterPro 34.2 2.4E+02 0.0052 22.5 8.4 84 37-131 83-167 (184)
156 COG0234 GroS Co-chaperonin Gro 34.0 1.7E+02 0.0038 21.1 5.7 56 82-142 22-80 (96)
157 PF12937 F-box-like: F-box-lik 33.0 62 0.0013 19.3 2.9 21 169-189 3-24 (47)
158 KOG1356 Putative transcription 31.9 18 0.00038 35.8 0.4 24 118-141 800-823 (889)
159 PF13613 HTH_Tnp_4: Helix-turn 31.1 50 0.0011 20.6 2.3 25 168-192 18-42 (53)
160 PF13994 PgaD: PgaD-like prote 30.6 58 0.0013 24.8 3.0 24 170-193 101-124 (138)
161 PF00166 Cpn10: Chaperonin 10 30.0 78 0.0017 22.3 3.4 28 112-139 49-76 (93)
162 COG1741 Pirin-related protein 28.8 3.8E+02 0.0082 23.1 11.8 42 65-108 166-207 (276)
163 cd00320 cpn10 Chaperonin 10 Kd 28.8 2.1E+02 0.0045 20.3 5.5 26 113-138 50-75 (93)
164 PF05721 PhyH: Phytanoyl-CoA d 28.8 92 0.002 23.8 4.0 29 116-144 179-208 (211)
165 PRK14584 hmsS hemin storage sy 27.3 75 0.0016 25.0 3.1 24 169-192 98-121 (153)
166 KOG2132 Uncharacterized conser 27.2 41 0.0009 29.8 1.8 76 64-140 241-349 (355)
167 PF04773 FecR: FecR protein; 25.7 2.2E+02 0.0047 19.2 8.5 54 78-133 21-75 (98)
168 PRK00364 groES co-chaperonin G 25.6 2.5E+02 0.0054 19.9 6.1 27 112-138 50-76 (95)
169 PF15513 DUF4651: Domain of un 25.6 1.3E+02 0.0029 20.0 3.6 21 108-128 39-59 (62)
170 PHA00672 hypothetical protein 24.5 3.3E+02 0.0072 20.9 8.2 72 72-152 46-117 (152)
171 PRK05467 Fe(II)-dependent oxyg 24.2 2.1E+02 0.0046 23.8 5.5 25 118-142 142-166 (226)
172 TIGR02408 ectoine_ThpD ectoine 22.4 1.1E+02 0.0024 25.8 3.6 37 118-154 212-250 (277)
173 KOG0501 K+-channel KCNQ [Inorg 22.1 1.4E+02 0.0031 28.9 4.4 50 73-127 569-618 (971)
174 PHA02699 hypothetical protein; 22.1 2.6E+02 0.0056 25.4 5.8 77 76-152 146-226 (466)
175 smart00550 Zalpha Z-DNA-bindin 21.9 1.1E+02 0.0024 20.2 2.8 25 170-194 23-47 (68)
176 COG2144 Selenophosphate synthe 21.3 61 0.0013 28.4 1.7 41 89-132 131-171 (324)
177 KOG1633 F-box protein JEMMA an 20.7 1.1E+02 0.0025 30.2 3.6 64 79-143 142-222 (776)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.97 E-value=2.3e-29 Score=222.27 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=146.9
Q ss_pred CCCCCCCCCcccCceEEeccccCCCcCCCCeEEEEEcccCCCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecE
Q 038563 25 SLPCKNSSLVTVEDFVFSGIKFRGKFSETGLASIPVNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGK 104 (198)
Q Consensus 25 g~~ck~~~~~~~~df~~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~ 104 (198)
..+-+.+..-.++.|+|+....++.. ..||+++.+++.++|+++ ++++++++|+||+++++|||++++|++||++|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~p~~-~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~ 276 (367)
T TIGR03404 200 QEAVTGPAGEVPGPFTYHLSEQKPKQ-VPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQ 276 (367)
T ss_pred cccCcCCCCCCCccEEEEhhhCCcee-cCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEE
Confidence 34444555556778999987777644 788999999999999988 589999999999999999999999999999999
Q ss_pred EEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEeCCCCceeeechhhhccCCCHHHHHHHhCCCHH
Q 038563 105 IYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFDSQNPGLQKIPSAVFGSNIKEELLEKAFGLTPK 184 (198)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~s~~pg~~~~~~~~f~~~~p~~vla~af~v~~~ 184 (198)
+++++.+++++...+.|++||+++||+|..|+++|.|+++++++++|++.+++.+.++ +|++ .+|++||+++|+++.+
T Consensus 277 ~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~-~~l~-~~p~~vl~~~~~~~~~ 354 (367)
T TIGR03404 277 ARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLN-QWLA-LTPPQLVAAHLNLDDE 354 (367)
T ss_pred EEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHH-HHHh-hCCHHHHHHHhCcCHH
Confidence 9999998877766789999999999999999999999999999999999999999987 5887 7999999999999999
Q ss_pred HHHHHhhhc
Q 038563 185 EIAKLRKRF 193 (198)
Q Consensus 185 ~v~~l~~~~ 193 (198)
.+++|++..
T Consensus 355 ~~~~l~~~~ 363 (367)
T TIGR03404 355 VIDSLKKEK 363 (367)
T ss_pred HHHhccccC
Confidence 999998753
No 2
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.93 E-value=1.4e-24 Score=192.00 Aligned_cols=135 Identities=24% Similarity=0.351 Sum_probs=121.2
Q ss_pred CCCeEEEEEcccCCCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECC
Q 038563 52 ETGLASIPVNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPR 131 (198)
Q Consensus 52 ~~g~~v~~~~~~~~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~ 131 (198)
..||+++.++..++|++++ +++.++++.||++.++||| ++.|++||++|++++++++++|+.+.+.|++||+++||+
T Consensus 48 ~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH-~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~ 124 (367)
T TIGR03404 48 ENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWH-KEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPP 124 (367)
T ss_pred ccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccC-CCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECC
Confidence 5688999999999999995 7999999999999999999 578999999999999999988998877999999999999
Q ss_pred CCeeEEEecCCCcEEEEEEEeCCC---CceeeechhhhccCCCHHHHHHHhCCCHHHHHHHhhh
Q 038563 132 GLVHFQMNVGDTWATILGSFDSQN---PGLQKIPSAVFGSNIKEELLEKAFGLTPKEIAKLRKR 192 (198)
Q Consensus 132 G~~H~~~N~g~~~~~~~~~~~s~~---pg~~~~~~~~f~~~~p~~vla~af~v~~~~v~~l~~~ 192 (198)
|.+|+++|.+ +.+.++++|++.. +..+.++ ++|+ .+|++||+++|+++.+++++|++.
T Consensus 125 g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~-~~l~-~~p~~Vla~~f~l~~~~~~~l~~~ 185 (367)
T TIGR03404 125 GIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVT-DWLA-HTPKDVLAKNFGVPESAFDNLPLK 185 (367)
T ss_pred CCeEEEEECC-CCeEEEEEeCCcccCCcceeeHH-HHHH-hCCHHHHHHHhCCCHHHHHhcccc
Confidence 9999999985 5688888888754 5666666 4787 699999999999999999999864
No 3
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.93 E-value=1e-24 Score=169.22 Aligned_cols=124 Identities=36% Similarity=0.558 Sum_probs=108.3
Q ss_pred CCCeEEEEEcccCCCCcccc-ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCC-----eEEEEE--EeC
Q 038563 52 ETGLASIPVNVNVFPGLNTL-GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQN-----RIFAKV--IEK 123 (198)
Q Consensus 52 ~~g~~v~~~~~~~~P~l~~~-gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~-----~~~~~~--l~~ 123 (198)
..+|+++.++..++|.+.++ ++.+.++.++||++.+|||| ++.|++||++|+++++++.+++ +....+ +++
T Consensus 12 ~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~ 90 (144)
T PF00190_consen 12 NEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKA 90 (144)
T ss_dssp ETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEET
T ss_pred CCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeeeec
Confidence 78999999999999977666 56666677799999999999 9999999999999999998875 345566 999
Q ss_pred CcEEEECCCCeeEEEecCCCcEEEEEEEeCCCCceeeechhhhccCCCHHHHHHHhCCCHHHH
Q 038563 124 GEVMVFPRGLVHFQMNVGDTWATILGSFDSQNPGLQKIPSAVFGSNIKEELLEKAFGLTPKEI 186 (198)
Q Consensus 124 Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~s~~pg~~~~~~~~f~~~~p~~vla~af~v~~~~v 186 (198)
||++++|+|.+||+.|.++++...+.+|++.+|..+ +|++|++++|+++.+++
T Consensus 91 Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~----------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 91 GDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ----------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp TEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE----------SSHHHHHHHEESSHHHH
T ss_pred ccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc----------CCcHHHHHhcCCCcCcC
Confidence 999999999999999999889999999988877754 89999999999999876
No 4
>PLN00212 glutelin; Provisional
Probab=99.93 E-value=1.4e-24 Score=196.93 Aligned_cols=145 Identities=15% Similarity=0.296 Sum_probs=125.3
Q ss_pred CCcC-CCCeEEEEEcccCCCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCC-eEEEEEEeCCc
Q 038563 48 GKFS-ETGLASIPVNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQN-RIFAKVIEKGE 125 (198)
Q Consensus 48 ~~~~-~~g~~v~~~~~~~~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~-~~~~~~l~~Gd 125 (198)
.++. +.+|+++.+++.++|+|++++||+.+++|.||++.+||||++|+|++||++|+++++|++++| +++..+|++||
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gd 401 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQ 401 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCC
Confidence 3444 889999999999999999999999999999999999999999999999999999999999874 78899999999
Q ss_pred EEEECCCCeeEEEecCCCcEEEEEEEeCCCCceeeec--hhhhccCCCHHHHHHHhCCCHHHHHHHhhhcC
Q 038563 126 VMVFPRGLVHFQMNVGDTWATILGSFDSQNPGLQKIP--SAVFGSNIKEELLEKAFGLTPKEIAKLRKRFA 194 (198)
Q Consensus 126 ~~~iP~G~~H~~~N~g~~~~~~~~~~~s~~pg~~~~~--~~~f~~~~p~~vla~af~v~~~~v~~l~~~~~ 194 (198)
+++||+|++|.... +++...+++.-.+.++-...++ .++|+ +||.+||+++|+++.+++++|+..+.
T Consensus 402 vfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~-alp~eVla~Af~is~eea~~lk~n~~ 470 (493)
T PLN00212 402 LLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFR-ALPVDVIANAYRISREEARRLKNNRG 470 (493)
T ss_pred EEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHH-hCCHHHHHHHcCCCHHHHHHHHhccc
Confidence 99999999998766 4566777665555444333332 47888 89999999999999999999998753
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.89 E-value=1.5e-21 Score=151.89 Aligned_cols=133 Identities=34% Similarity=0.654 Sum_probs=116.5
Q ss_pred CCCeEEEEEcccCCCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCC-CeEEEEEEeCCcEEEEC
Q 038563 52 ETGLASIPVNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQ-NRIFAKVIEKGEVMVFP 130 (198)
Q Consensus 52 ~~g~~v~~~~~~~~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~-~~~~~~~l~~Gd~~~iP 130 (198)
..||+++.++...+|.+++.++.+.+++++||+..++|+|+++.|++||++|++++.+.+.. ++.....+++||+++||
T Consensus 9 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip 88 (146)
T smart00835 9 NEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVP 88 (146)
T ss_pred CCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEEC
Confidence 67889999999999999999999999999999999999998889999999999999987654 35567899999999999
Q ss_pred CCCeeEEEecCCCcEEEEEEEeCCCCceee-e--chhhhccCCCHHHHHHHhCCCHHHH
Q 038563 131 RGLVHFQMNVGDTWATILGSFDSQNPGLQK-I--PSAVFGSNIKEELLEKAFGLTPKEI 186 (198)
Q Consensus 131 ~G~~H~~~N~g~~~~~~~~~~~s~~pg~~~-~--~~~~f~~~~p~~vla~af~v~~~~v 186 (198)
+|..|++.|.+++++++++ +.+++|.... + ..++|. ++++++++++|+++++++
T Consensus 89 ~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 89 QGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLR-GLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred CCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhh-cCCHHHHHHHhCcChHHc
Confidence 9999999999999999985 6666765432 2 146887 899999999999999875
No 6
>PLN00212 glutelin; Provisional
Probab=99.85 E-value=3.2e-20 Score=168.56 Aligned_cols=138 Identities=17% Similarity=0.322 Sum_probs=117.1
Q ss_pred CCCeEEEEEcccCCCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCC-----eE----------
Q 038563 52 ETGLASIPVNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQN-----RI---------- 116 (198)
Q Consensus 52 ~~g~~v~~~~~~~~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~-----~~---------- 116 (198)
..+|.+..++ ..-+.|...|+++.|++++|+++.+||+| ++.+++||++|++.++++.+.- +.
T Consensus 60 se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~ 137 (493)
T PLN00212 60 SEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQS 137 (493)
T ss_pred ccCceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccc
Confidence 7788777777 66899999999999999999999999999 8999999999999999996421 10
Q ss_pred ----------EEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEeCCCCc--------eeeech---------------
Q 038563 117 ----------FAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFDSQNPG--------LQKIPS--------------- 163 (198)
Q Consensus 117 ----------~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~s~~pg--------~~~~~~--------------- 163 (198)
..+.|++||+++||+|++||++|.|+++++++++++..++. .+.++.
T Consensus 138 ~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~~ 217 (493)
T PLN00212 138 QSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIEQ 217 (493)
T ss_pred cccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccccc
Confidence 12589999999999999999999999999999988754432 333432
Q ss_pred ----hhhccCCCHHHHHHHhCCCHHHHHHHhhh
Q 038563 164 ----AVFGSNIKEELLEKAFGLTPKEIAKLRKR 192 (198)
Q Consensus 164 ----~~f~~~~p~~vla~af~v~~~~v~~l~~~ 192 (198)
++|+ +|++++|++||+++.++++||+..
T Consensus 218 ~~~~nifs-GF~~e~La~Afnv~~e~~~klq~~ 249 (493)
T PLN00212 218 HSGQNIFS-GFSTELLSEALGINAQVAKRLQSQ 249 (493)
T ss_pred cccCchhh-cCCHHHHHHHHCCCHHHHHHHhcc
Confidence 3897 999999999999999999999754
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.82 E-value=1.1e-19 Score=147.61 Aligned_cols=151 Identities=24% Similarity=0.334 Sum_probs=129.9
Q ss_pred ccCceEEeccccCCCcCCCCeEEEEEcccCCCCccccceEEEEEEEeCCcEecceeCCCCCE--EEEEEecEEEEEEEeC
Q 038563 35 TVEDFVFSGIKFRGKFSETGLASIPVNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATE--IAVVLEGKIYSGFVDT 112 (198)
Q Consensus 35 ~~~df~~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~E--i~yVl~G~~~~~~~~~ 112 (198)
..++|+|....+.+. ..++.++...+..+|+. .-..+.+.||++..+||||++.| |+|||+|++++.+.++
T Consensus 49 ~~~~~~yel~~~~~~--~~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~ 121 (209)
T COG2140 49 KEDDFVYELLESEPG--ERGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKP 121 (209)
T ss_pred CCCceEEEeeccccc--ccCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcC
Confidence 678999998766544 34889999988899888 44556899999999999999999 9999999999999999
Q ss_pred CCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEeCCCCceeeechhhhccCCCHHHHHHHhCCCHHHHHHHhhh
Q 038563 113 QNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFDSQNPGLQKIPSAVFGSNIKEELLEKAFGLTPKEIAKLRKR 192 (198)
Q Consensus 113 ~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~s~~pg~~~~~~~~f~~~~p~~vla~af~v~~~~v~~l~~~ 192 (198)
+|+.....+++||+++||++..|+..|+|++|++++.++....+....+. ++.+ +++..+++..|+.+....+.++.+
T Consensus 122 ~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~-~~~~-~~~~~~~~~~~~~~~~~~D~p~~~ 199 (209)
T COG2140 122 EGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLI-AWLG-GMPPVLVENGLNKNPKYVDVPRIK 199 (209)
T ss_pred CCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeee-ehhc-cCCceeeccccccCcccccCcccc
Confidence 99988999999999999999999999999999999999998777666655 4555 799999999999888777776555
Q ss_pred cC
Q 038563 193 FA 194 (198)
Q Consensus 193 ~~ 194 (198)
+.
T Consensus 200 ~~ 201 (209)
T COG2140 200 FA 201 (209)
T ss_pred cc
Confidence 44
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.57 E-value=3.5e-14 Score=96.27 Aligned_cols=70 Identities=27% Similarity=0.370 Sum_probs=63.5
Q ss_pred EEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEE
Q 038563 77 RADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSF 151 (198)
Q Consensus 77 ~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~ 151 (198)
+++++||+..++|+|+...|++||++|++++.+ +|+ ...|++||.+++|++..|...|.+++++.+++++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 578999999999999866699999999999884 355 5799999999999999999999999999999875
No 9
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.45 E-value=9.7e-13 Score=100.21 Aligned_cols=85 Identities=29% Similarity=0.378 Sum_probs=73.4
Q ss_pred CCCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCC
Q 038563 64 VFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDT 143 (198)
Q Consensus 64 ~~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~ 143 (198)
-.+...+..+.+.++.++||+.++.|+||...+.+||++|++++++. ++ .+++++||++++|+|..|+..|.++.
T Consensus 34 ~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~---g~--~~~l~~Gd~i~ip~g~~H~~~a~~~~ 108 (131)
T COG1917 34 VLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE---GE--KKELKAGDVIIIPPGVVHGLKAVEDE 108 (131)
T ss_pred eccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec---CC--ceEecCCCEEEECCCCeeeeccCCCC
Confidence 44444556789999999999999999998678999999999999974 55 57999999999999999999999998
Q ss_pred cEEEEEEEeC
Q 038563 144 WATILGSFDS 153 (198)
Q Consensus 144 ~~~~~~~~~s 153 (198)
+..+++++..
T Consensus 109 ~~~~l~v~~~ 118 (131)
T COG1917 109 PMVLLLVFPL 118 (131)
T ss_pred ceeEEEEeee
Confidence 8777777765
No 10
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.45 E-value=1.5e-12 Score=99.14 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=69.8
Q ss_pred cceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEE-EEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEE
Q 038563 71 LGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSG-FVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILG 149 (198)
Q Consensus 71 ~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~-~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~ 149 (198)
.++++.+++++||+..+.|+|.. .|++||++|++++. +. +|+ ...|++||++++|++..|.+.|. +++++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~--~g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~ 105 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLA--TGE--VHPIRPGTMYALDKHDRHYLRAG--EDMRLVC 105 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcC--CCE--EEEeCCCeEEEECCCCcEEEEcC--CCEEEEE
Confidence 46899999999999999999964 79999999999987 42 255 57999999999999999999997 8999999
Q ss_pred EEeCCCCce
Q 038563 150 SFDSQNPGL 158 (198)
Q Consensus 150 ~~~s~~pg~ 158 (198)
+++..-+|.
T Consensus 106 v~tP~~~~~ 114 (125)
T PRK13290 106 VFNPPLTGR 114 (125)
T ss_pred EECCCCCCc
Confidence 998655553
No 11
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.45 E-value=2.3e-12 Score=104.63 Aligned_cols=89 Identities=25% Similarity=0.287 Sum_probs=76.8
Q ss_pred CCccccceEEEEEEEeCCcE------ecceeCCCC--CEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEE
Q 038563 66 PGLNTLGMSMVRADFDVGGV------NVPHFHPRA--TEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQ 137 (198)
Q Consensus 66 P~l~~~gls~~~~~l~pg~~------~~pH~Hp~a--~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~ 137 (198)
|.++.-++.+....+.||.. .+.|+|+.. .|++||++|++.+.+.+.+|+.....+++||+++||+|..|..
T Consensus 61 ~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~ 140 (191)
T PRK04190 61 PEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRS 140 (191)
T ss_pred CCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEe
Confidence 34555579999999999996 567999755 4999999999999987776665578999999999999999999
Q ss_pred EecCCCcEEEEEEEeCC
Q 038563 138 MNVGDTWATILGSFDSQ 154 (198)
Q Consensus 138 ~N~g~~~~~~~~~~~s~ 154 (198)
.|.|++++++++++...
T Consensus 141 iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 141 VNTGDEPLVFLACYPAD 157 (191)
T ss_pred EECCCCCEEEEEEEcCC
Confidence 99999999999998753
No 12
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.9e-12 Score=98.57 Aligned_cols=81 Identities=21% Similarity=0.184 Sum_probs=72.9
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEE
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSF 151 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~ 151 (198)
..++.++.++||+...+|.|.+.+|++||++|++.+.+. ++ ...|++||+++||+|..|.+.|.|..++.++.+-
T Consensus 35 ~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~---~~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~ 109 (127)
T COG0662 35 RYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG---GE--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQ 109 (127)
T ss_pred cEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCcceEEEEEe
Confidence 689999999999999899998899999999999999884 55 5799999999999999999999999999999987
Q ss_pred eCCCCc
Q 038563 152 DSQNPG 157 (198)
Q Consensus 152 ~s~~pg 157 (198)
.....+
T Consensus 110 ~p~~~~ 115 (127)
T COG0662 110 SPPYLG 115 (127)
T ss_pred cCCcCC
Confidence 655443
No 13
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=3.5e-11 Score=89.67 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=74.9
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEE
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSF 151 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~ 151 (198)
+|.|-.++++||+....|-|..-+-.+||++|+..+++.+. -.+..+.++||+++||+|++|.-.|.+++++..+++.
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r--LE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIaR 122 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR--LEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIAR 122 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccc--eeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEEc
Confidence 78899999999999999999877778999999999998632 2357899999999999999999999999999999988
Q ss_pred eCCCCce
Q 038563 152 DSQNPGL 158 (198)
Q Consensus 152 ~s~~pg~ 158 (198)
++.+|..
T Consensus 123 sDp~~~E 129 (142)
T COG4101 123 SDPNPQE 129 (142)
T ss_pred cCCCCCc
Confidence 8777643
No 14
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.24 E-value=5.8e-11 Score=92.45 Aligned_cols=84 Identities=23% Similarity=0.317 Sum_probs=69.9
Q ss_pred CCCCccccceEEEEEEEeCCcE-ecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCC--CeeEEEec
Q 038563 64 VFPGLNTLGMSMVRADFDVGGV-NVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRG--LVHFQMNV 140 (198)
Q Consensus 64 ~~P~l~~~gls~~~~~l~pg~~-~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G--~~H~~~N~ 140 (198)
.+-+|...|+.+ ..++||+. ..+|||...+|++|||+|++.+.+. +. ...|++||++-||+| ..|.++|.
T Consensus 35 ~~~Gl~~fGvn~--~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d---~~--e~~lrpGD~~gFpAG~~~aHhliN~ 107 (161)
T COG3837 35 DALGLKRFGVNL--EIVEPGGESSLRHWHSAEDEFVYILEGEGTLRED---GG--ETRLRPGDSAGFPAGVGNAHHLINR 107 (161)
T ss_pred hhcChhhcccce--EEeCCCCccccccccccCceEEEEEcCceEEEEC---Ce--eEEecCCceeeccCCCcceeEEeec
Confidence 445666545554 57999995 7999999999999999999998763 44 468999999999999 89999999
Q ss_pred CCCcEEEEEEEeCC
Q 038563 141 GDTWATILGSFDSQ 154 (198)
Q Consensus 141 g~~~~~~~~~~~s~ 154 (198)
|+..++++++=+..
T Consensus 108 s~~~~~yL~vG~r~ 121 (161)
T COG3837 108 SDVILRYLEVGTRE 121 (161)
T ss_pred CCceEEEEEecccc
Confidence 99999999886543
No 15
>PRK11171 hypothetical protein; Provisional
Probab=99.23 E-value=3.7e-10 Score=96.22 Aligned_cols=108 Identities=17% Similarity=0.103 Sum_probs=81.2
Q ss_pred CCCcccCceEEeccccCCCcCCCCeEEEEEcccCCCCccccceEEEEEEEeCCcEecceeCC-CCCEEEEEEecEEEEEE
Q 038563 31 SSLVTVEDFVFSGIKFRGKFSETGLASIPVNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHP-RATEIAVVLEGKIYSGF 109 (198)
Q Consensus 31 ~~~~~~~df~~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~gls~~~~~l~pg~~~~pH~Hp-~a~Ei~yVl~G~~~~~~ 109 (198)
.+.+++++.+++.+..- .+..++.+.. | ..+.++.+.+++++||+....|.|+ ...|++||++|++++.+
T Consensus 28 ~a~~~p~~~v~~~lp~~-----~~~~~~~L~~---~-~~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~ 98 (266)
T PRK11171 28 YAVIPPDDIVTSVLPGW-----ENTRAWVLAR---P-GLGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL 98 (266)
T ss_pred eEEECCcCEEeecCCCC-----CCeEEEEEeC---C-CCCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE
Confidence 44555666666644222 1233444432 2 2234689999999999987777775 45899999999999987
Q ss_pred EeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEe
Q 038563 110 VDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFD 152 (198)
Q Consensus 110 ~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~ 152 (198)
. ++ ...|++||+++||++..|.+.|.|++++.++++..
T Consensus 99 ~---g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~ 136 (266)
T PRK11171 99 E---GK--THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRK 136 (266)
T ss_pred C---CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEc
Confidence 3 55 57999999999999999999999999999998864
No 16
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.22 E-value=1.2e-10 Score=106.45 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=71.0
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEE
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSF 151 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~ 151 (198)
++.+.+++++||+..++|+|+...|.+||++|++++.+. |+ ...|++||+++||+|.+|.+.|.|+++++++++.
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~d---g~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIG---DE--TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 688999999999998989998889999999999999873 66 5799999999999999999999999999999998
Q ss_pred eCC
Q 038563 152 DSQ 154 (198)
Q Consensus 152 ~s~ 154 (198)
..+
T Consensus 450 ~~~ 452 (468)
T TIGR01479 450 SGS 452 (468)
T ss_pred cCC
Confidence 643
No 17
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.20 E-value=2.3e-10 Score=92.10 Aligned_cols=76 Identities=20% Similarity=0.271 Sum_probs=65.1
Q ss_pred cceEEEEEEEeCCcEe-cceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEE
Q 038563 71 LGMSMVRADFDVGGVN-VPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILG 149 (198)
Q Consensus 71 ~gls~~~~~l~pg~~~-~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~ 149 (198)
..+.+.+.+++||+.. +.|+| ...|++||++|++++.+. ++ .+.|++||+++||++.+|.+.|.+++++.+++
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h-~~~E~~~Vl~G~~~~~~~---~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~ 178 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKH-QGEEIGTVLEGEIVLTIN---GQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRIIS 178 (185)
T ss_pred CeeEEEEEEccCCCCccccccc-CCcEEEEEEEeEEEEEEC---CE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEE
Confidence 3567777889999964 46777 579999999999999873 55 57999999999999999999999999999998
Q ss_pred EEe
Q 038563 150 SFD 152 (198)
Q Consensus 150 ~~~ 152 (198)
+..
T Consensus 179 ~~~ 181 (185)
T PRK09943 179 AHT 181 (185)
T ss_pred EeC
Confidence 865
No 18
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.17 E-value=2.8e-10 Score=104.09 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=69.6
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEE
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSF 151 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~ 151 (198)
++.+.+++++||+....|+|...+|.+||++|++++.+. |+ ...|++||.++||+|.+|.+.|.|++++++|++.
T Consensus 384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~id---g~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~ 458 (478)
T PRK15460 384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTID---GD--IKLLGENESIYIPLGATHCLENPGKIPLDLIEVR 458 (478)
T ss_pred cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 688999999999987778887788999999999999884 56 5799999999999999999999999999999997
Q ss_pred eC
Q 038563 152 DS 153 (198)
Q Consensus 152 ~s 153 (198)
..
T Consensus 459 ~g 460 (478)
T PRK15460 459 SG 460 (478)
T ss_pred cC
Confidence 53
No 19
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.14 E-value=1.1e-09 Score=85.99 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=69.8
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEE
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSF 151 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~ 151 (198)
+..+.++++.||....+|.|....|..+|++|++.+.+ +++ .+.+++||.+.||+|..|.+.|.|+.++.++.+-
T Consensus 62 ~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq 136 (151)
T PF01050_consen 62 GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DDE--EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQ 136 (151)
T ss_pred CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CCE--EEEEcCCCEEEECCCCEEEEECCCCcCcEEEEEe
Confidence 67899999999999999999999999999999999987 355 5799999999999999999999999999999875
Q ss_pred e
Q 038563 152 D 152 (198)
Q Consensus 152 ~ 152 (198)
.
T Consensus 137 ~ 137 (151)
T PF01050_consen 137 T 137 (151)
T ss_pred c
Confidence 4
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.08 E-value=9.8e-10 Score=93.34 Aligned_cols=72 Identities=19% Similarity=0.082 Sum_probs=63.0
Q ss_pred ceEEEEEEEeCCcEecc-eeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEE
Q 038563 72 GMSMVRADFDVGGVNVP-HFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILG 149 (198)
Q Consensus 72 gls~~~~~l~pg~~~~p-H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~ 149 (198)
++.+.+++++||+.++. |.| ..+|.+|||+|++.+.+ ||+ +..+++||++++|++.+|++.|.|++++++|.
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H-~~eh~~yiL~G~G~~~~---~g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ 250 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETH-VMEHGLYVLEGKGVYNL---DNN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLL 250 (260)
T ss_pred CcEEEEEEECCCcccCCcccc-cceeEEEEEeceEEEEE---CCE--EEEecCCCEEEECCCCCEEEEecCCCcEEEEE
Confidence 57778899999999986 555 56788999999999876 466 67999999999999999999999999998874
No 21
>PRK11171 hypothetical protein; Provisional
Probab=99.01 E-value=3.4e-09 Score=90.32 Aligned_cols=75 Identities=20% Similarity=0.036 Sum_probs=65.7
Q ss_pred ceEEEEEEEeCCcEecce-eCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEE
Q 038563 72 GMSMVRADFDVGGVNVPH-FHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGS 150 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH-~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~ 150 (198)
...+.+++|+||+.++.| +| ..+|.+||++|++++.+ +++ +..|++||++.|+++..|++.|.|+++++++..
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~-~~ee~i~Vl~G~~~~~~---~~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~ 256 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETH-VMEHGLYVLEGKGVYRL---NND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLY 256 (266)
T ss_pred CcEEEEEEECCCCEEccCcCC-CceEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEE
Confidence 468899999999999885 56 67899999999999876 366 679999999999999999999999999998865
Q ss_pred Ee
Q 038563 151 FD 152 (198)
Q Consensus 151 ~~ 152 (198)
-+
T Consensus 257 k~ 258 (266)
T PRK11171 257 KD 258 (266)
T ss_pred cc
Confidence 43
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.01 E-value=3.9e-09 Score=89.66 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=65.6
Q ss_pred ceEEEEEEEeCCcEe-cceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEE
Q 038563 72 GMSMVRADFDVGGVN-VPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGS 150 (198)
Q Consensus 72 gls~~~~~l~pg~~~-~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~ 150 (198)
.+.+.+++++||+.. .+|+|+..+|++||++|++++.+. ++ ...|++||.+++|++..|.+.|.++++++++++
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~---g~--~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v 131 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAE---GE--THELREGGYAYLPPGSKWTLANAQAEDARFFLY 131 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEEC---CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence 588999999998864 456676568999999999998863 55 569999999999999999999999999999887
Q ss_pred Ee
Q 038563 151 FD 152 (198)
Q Consensus 151 ~~ 152 (198)
-.
T Consensus 132 ~k 133 (260)
T TIGR03214 132 KK 133 (260)
T ss_pred Ee
Confidence 64
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.99 E-value=9.6e-09 Score=79.51 Aligned_cols=93 Identities=17% Similarity=0.077 Sum_probs=61.0
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCC----CeEEEEEEeCCcEEEECCCCeeEEEecC-CCcEE
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQ----NRIFAKVIEKGEVMVFPRGLVHFQMNVG-DTWAT 146 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~----~~~~~~~l~~Gd~~~iP~G~~H~~~N~g-~~~~~ 146 (198)
.+.+.+=++.||...|+|-| ..+|+++|++|+++..+.... |+...+.+-+++.+.||.+..|.++|++ .+++.
T Consensus 43 evEVwlQTfAPG~~TPiHRH-sCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq 121 (167)
T PF02041_consen 43 EVEVWLQTFAPGSATPIHRH-SCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ 121 (167)
T ss_dssp SEEEEEEEE-TT-B--EEEE-SS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred eeeEEeeeecCCCCCCCccc-cccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence 57888889999999999999 689999999999999887653 6666789999999999999999999999 48999
Q ss_pred EEEEEeCCCCceeeechhhh
Q 038563 147 ILGSFDSQNPGLQKIPSAVF 166 (198)
Q Consensus 147 ~~~~~~s~~pg~~~~~~~~f 166 (198)
++++++. -|-.+.+..+|+
T Consensus 122 vlViiSr-pPvkvf~y~dw~ 140 (167)
T PF02041_consen 122 VLVIISR-PPVKVFIYDDWS 140 (167)
T ss_dssp EEEEEES-SS--EEEESSTT
T ss_pred EEEEecC-CCeEEEEecccc
Confidence 9988874 366666655564
No 24
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.84 E-value=5e-08 Score=78.64 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=58.1
Q ss_pred cceEEEEEEEeCCcE------ecceeCCC------CCEEEEEEecEEEEEEEeCCC----eEEEEEEeCCcEEEECCCCe
Q 038563 71 LGMSMVRADFDVGGV------NVPHFHPR------ATEIAVVLEGKIYSGFVDTQN----RIFAKVIEKGEVMVFPRGLV 134 (198)
Q Consensus 71 ~gls~~~~~l~pg~~------~~pH~Hp~------a~Ei~yVl~G~~~~~~~~~~~----~~~~~~l~~Gd~~~iP~G~~ 134 (198)
.+|......+.||.+ ..=|+|+. ..|+.+|++|++.+-+-+.++ +.+...+++||+++||++..
T Consensus 48 ~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~ya 127 (182)
T PF06560_consen 48 RNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYA 127 (182)
T ss_dssp --EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-E
T ss_pred eeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCce
Confidence 357777778888764 45699987 899999999999999988887 77778999999999999999
Q ss_pred eEEEecCCCcEEEEEEEeC
Q 038563 135 HFQMNVGDTWATILGSFDS 153 (198)
Q Consensus 135 H~~~N~g~~~~~~~~~~~s 153 (198)
|...|+|++++++.+..++
T Consensus 128 H~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 128 HRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp EEEEE-SSS-EEEEEEEET
T ss_pred EEEEECCCCcEEEEEEEec
Confidence 9999999999999988875
No 25
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.70 E-value=1.6e-07 Score=75.13 Aligned_cols=70 Identities=19% Similarity=0.167 Sum_probs=55.7
Q ss_pred EEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEe
Q 038563 79 DFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFD 152 (198)
Q Consensus 79 ~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~ 152 (198)
.=.||.....|+|+ .+|++|+++|++.+.+.|. |+.....|++||++++|+|+.|..+.. +..+.+++=.
T Consensus 40 vgGpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~LviE~ 109 (177)
T PRK13264 40 VGGPNARTDFHYDP-GEEFFYQLEGDMYLKVQED-GKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVIER 109 (177)
T ss_pred EccCCcccccccCC-CceEEEEECCeEEEEEEcC-CceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEEEe
Confidence 34677778889996 7999999999999999873 544468999999999999999999773 4455554433
No 26
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.65 E-value=1.8e-07 Score=73.73 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=51.9
Q ss_pred eCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEE
Q 038563 81 DVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGS 150 (198)
Q Consensus 81 ~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~ 150 (198)
.||.....|.|+ ..|++|+++|++.+.+.+. |+.....|++||++++|+|+.|.....++ ++.+++
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~--t~~LvI 101 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAG--SIGLVI 101 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCC--cEEEEE
Confidence 555556678885 8999999999999998765 54446899999999999999999987533 444443
No 27
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.64 E-value=5.5e-07 Score=64.46 Aligned_cols=82 Identities=24% Similarity=0.329 Sum_probs=59.3
Q ss_pred CCCeEEEEEcccCCCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECC
Q 038563 52 ETGLASIPVNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPR 131 (198)
Q Consensus 52 ~~g~~v~~~~~~~~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~ 131 (198)
..|.++..+. ..+.-+ |..+..++++||+..+.|.|+ ..|.+|||+|++.. .++ .+.+||.+..|+
T Consensus 7 ~~Gv~~~~L~--~~~~~~--g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~~~-----~~~~G~~~~~p~ 72 (91)
T PF12973_consen 7 RPGVSVKPLH--RDEGET--GERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----GDG-----RYGAGDWLRLPP 72 (91)
T ss_dssp STTEEEEEEE--ECSSST--TEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----TTC-----EEETTEEEEE-T
T ss_pred CCCEEEEEec--cCCCcc--cCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----CCc-----cCCCCeEEEeCC
Confidence 3456666665 222222 678888999999999999995 68888999999862 222 459999999999
Q ss_pred CCeeEEEecCCCcEEEEE
Q 038563 132 GLVHFQMNVGDTWATILG 149 (198)
Q Consensus 132 G~~H~~~N~g~~~~~~~~ 149 (198)
|..|.... ++.+.+++
T Consensus 73 g~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 73 GSSHTPRS--DEGCLILV 88 (91)
T ss_dssp TEEEEEEE--SSCEEEEE
T ss_pred CCccccCc--CCCEEEEE
Confidence 99999984 56676664
No 28
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.61 E-value=9.9e-07 Score=62.76 Aligned_cols=72 Identities=21% Similarity=0.224 Sum_probs=53.8
Q ss_pred ceEEEEEEEeCCcEe-cceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEE
Q 038563 72 GMSMVRADFDVGGVN-VPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILG 149 (198)
Q Consensus 72 gls~~~~~l~pg~~~-~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~ 149 (198)
..+...++|+|++.- +-+++ +..-++||++|.+++++- +. ++.+.+|+++.+|+|-.-.+.|.++++++++-
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~-~~~~vF~V~~G~v~Vti~---~~--~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF 83 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSR-DNTMVFYVIKGKVEVTIH---ET--SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFF 83 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE---SEEEEEEEEESEEEEEET---TE--EEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred CceeEEEEeCCCCccCCcccC-CcEEEEEEEeCEEEEEEc---Cc--EEEEeCCCEEEECCCCEEEEEECCCCcEEEEE
Confidence 467788999999975 44666 678889999999999983 44 57899999999999999999999999998874
No 29
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.59 E-value=7.8e-07 Score=70.26 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=53.3
Q ss_pred ecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEeCCCCce
Q 038563 86 NVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFDSQNPGL 158 (198)
Q Consensus 86 ~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~s~~pg~ 158 (198)
...|.|. ..|+-||++|++.+.+.+.+++.....+++||++++|+|+.|++.-.......++=.|.. .||+
T Consensus 85 ~~EH~H~-deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~-~~gW 155 (157)
T PF03079_consen 85 FEEHTHE-DEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKD-EPGW 155 (157)
T ss_dssp CS-EEES-S-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESS-CGGE
T ss_pred heeEecC-hheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecC-CCCc
Confidence 4689994 799999999999999998888876789999999999999999998655556676666654 4664
No 30
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.58 E-value=6e-07 Score=66.44 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=47.1
Q ss_pred CCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEe
Q 038563 82 VGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFD 152 (198)
Q Consensus 82 pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~ 152 (198)
++...++|+|+ .-|++||++|++++.+ +++ ...+++||++++|+|.+|.....++++...+.+.=
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~---~~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~ 76 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHI---DGQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF 76 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEE---TTE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEE---CCE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE
Confidence 44457899995 8999999999999876 366 57999999999999999999988876776666553
No 31
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.50 E-value=5.5e-07 Score=74.56 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=62.4
Q ss_pred eEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEe
Q 038563 73 MSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFD 152 (198)
Q Consensus 73 ls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~ 152 (198)
..+..++++||+.++.|+| .+.|+.+||+|++. |++ ..+.+||++..|.|..|...+.+++++..+++.+
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H-~G~E~tlVLeG~f~----de~-----g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~d 196 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTH-KGFELTLVLHGAFS----DET-----GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLD 196 (215)
T ss_pred cEEEEEEECCCCccCCCcC-CCcEEEEEEEEEEE----cCC-----CccCCCeEEECCCCCCcCcccCCCCCeEEEEEec
Confidence 4667789999999999999 68999999999953 332 2579999999999999999999999999999987
Q ss_pred CC
Q 038563 153 SQ 154 (198)
Q Consensus 153 s~ 154 (198)
..
T Consensus 197 ap 198 (215)
T TIGR02451 197 AP 198 (215)
T ss_pred CC
Confidence 53
No 32
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=98.48 E-value=6.7e-07 Score=75.50 Aligned_cols=105 Identities=22% Similarity=0.302 Sum_probs=57.4
Q ss_pred CcccCceEEeccccCCCcCCCCeEEEEEcccCCCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeC
Q 038563 33 LVTVEDFVFSGIKFRGKFSETGLASIPVNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDT 112 (198)
Q Consensus 33 ~~~~~df~~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~ 112 (198)
.+.++|..|.-+.-..+ ..+.....+- ..|.-. |.+..|+++++|-..|||+| ++++.+|||+|.+..+
T Consensus 2 ~v~~~d~~w~~~~p~~~--~~~~~~~~L~--gd~~~~--g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~~---- 70 (251)
T PF14499_consen 2 VVHADDVKWGPLNPARG--DKGPGAAVLW--GDPTKD--GPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHNG---- 70 (251)
T ss_dssp GGGS--EEEE--TTS-T--TS--EEEEEE--EE--TT--S-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEET----
T ss_pred ccchhhccccccCCCCC--CCCcceeeee--cCcccC--CcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEcC----
Confidence 35778888884321111 1222222322 333333 88999999999999999999 5899999999987653
Q ss_pred CCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEE
Q 038563 113 QNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATIL 148 (198)
Q Consensus 113 ~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~ 148 (198)
+.+....-|.+|..+..|+|..|.....+++.+.++
T Consensus 71 ~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 71 DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred CCcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence 234345679999999999999999877666655554
No 33
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.48 E-value=2.6e-06 Score=70.72 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=52.4
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEE
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSF 151 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~ 151 (198)
.|++....++. ...+||-+..|+.||++|++++.+ +|+ ++.+++||+++||+|..|.+...+ .+.++.+.
T Consensus 156 ~m~aGf~~~~~---~sf~wtl~~dEi~YVLEGe~~l~I---dG~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRflyV~ 225 (233)
T PRK15457 156 SMAAGFMQWEN---AFFPWTLNYDEIDMVLEGELHVRH---EGE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLYVA 225 (233)
T ss_pred ceeeEEEEEec---CccceeccceEEEEEEEeEEEEEE---CCE--EEEeCCCcEEEECCCCeEEecCCC--CeeEEEEE
Confidence 45555556664 334588789999999999999987 477 679999999999999996555443 55555544
No 34
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.40 E-value=3.1e-06 Score=67.04 Aligned_cols=74 Identities=18% Similarity=0.298 Sum_probs=62.8
Q ss_pred cceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEeCCCCceeeec
Q 038563 87 VPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFDSQNPGLQKIP 162 (198)
Q Consensus 87 ~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~s~~pg~~~~~ 162 (198)
.-|.| ...|+-|++.|.+.+.+...+|+.+...+.+||.+.+|+|+-||+.-..+...+++=.|. ..+|++-+.
T Consensus 89 ~EH~H-~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gWVa~y 162 (181)
T COG1791 89 QEHLH-TDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGWVAIY 162 (181)
T ss_pred HHhcc-CCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCceeee
Confidence 56999 579999999999999999999999999999999999999999999866566667666666 457876543
No 35
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.38 E-value=1.4e-06 Score=75.22 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=49.8
Q ss_pred EEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCC
Q 038563 78 ADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGD 142 (198)
Q Consensus 78 ~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~ 142 (198)
..-+|..+.++||| +.-|++|+++|++.+.+ +|+ ...+++||+++|+.|.+|.....++
T Consensus 31 ~~~~~~~m~~~HwH-~e~Ei~yv~~G~~~~~i---~g~--~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 31 EFRPPHIMPTSHWH-GQVEVNVPFDGDVEYLI---NNE--KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EeeCCCCCCCCCcc-ccEEEEEecCCcEEEEE---CCE--EEEEcCCcEEEEecCCcccccccCC
Confidence 35677788999999 68999999999998776 466 5789999999999999998765544
No 36
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.35 E-value=1e-05 Score=61.10 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=72.5
Q ss_pred cccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEE
Q 038563 69 NTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATIL 148 (198)
Q Consensus 69 ~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~ 148 (198)
.++|.|+-...+.+|.....|+- +.-|-+||++|++++...+ +|+ .+.+++|.+....+.-.|++.... ++.++
T Consensus 31 DgmGFS~h~T~i~aGtet~~~Yk-nHlEAvyci~G~Gev~~~~-~G~--~~~i~pGt~YaLd~hD~H~lra~~--dm~~v 104 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYK-NHLEAVYCIEGEGEVEDLD-TGE--VHPIKPGTMYALDKHDRHYLRAKT--DMRLV 104 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEec-CceEEEEEEeceEEEEEcc-CCc--EEEcCCCeEEecCCCccEEEEecC--CEEEE
Confidence 45799999999999999999998 6899999999999988764 477 579999999999999999999754 89999
Q ss_pred EEEeCCCCc
Q 038563 149 GSFDSQNPG 157 (198)
Q Consensus 149 ~~~~s~~pg 157 (198)
++||.+--|
T Consensus 105 CVFnPpltG 113 (126)
T PF06339_consen 105 CVFNPPLTG 113 (126)
T ss_pred EEcCCCCcC
Confidence 999875444
No 37
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.24 E-value=5.8e-06 Score=72.61 Aligned_cols=76 Identities=21% Similarity=0.203 Sum_probs=63.7
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEE
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSF 151 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~ 151 (198)
.|.+..-.|.||...++|-| .+.-+.||++|++..+.+ +|+ ...+++||+++.|.+..|...|.|++++..+.+.
T Consensus 80 tl~a~~q~l~pGe~~~~HRh-t~sAl~~vveG~G~~t~V--~g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~l 154 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRH-TQSALRFIVEGKGAFTAV--DGE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGL 154 (335)
T ss_pred hHHhhhEEeCCCCCCCcccc-ccceEEEEEEcCceEEEE--CCE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEecC
Confidence 45556668999999999999 588999999999865555 466 5799999999999999999999999997776555
Q ss_pred e
Q 038563 152 D 152 (198)
Q Consensus 152 ~ 152 (198)
+
T Consensus 155 D 155 (335)
T TIGR02272 155 D 155 (335)
T ss_pred C
Confidence 4
No 38
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=98.23 E-value=4.4e-05 Score=58.46 Aligned_cols=97 Identities=14% Similarity=0.083 Sum_probs=55.0
Q ss_pred CCeEEEEEcccCCCCccccceEEEEEE-EeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCc-EEEEC
Q 038563 53 TGLASIPVNVNVFPGLNTLGMSMVRAD-FDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGE-VMVFP 130 (198)
Q Consensus 53 ~g~~v~~~~~~~~P~l~~~gls~~~~~-l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd-~~~iP 130 (198)
..|.++.+......... --.+..+. .++|.....|.|....|+++|++|++++.+.+..++ ....|..-+ .+.||
T Consensus 14 ~RG~L~~~e~~~~ipf~--i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ip 90 (131)
T PF05523_consen 14 ERGSLSVIERFDDIPFE--IKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIP 90 (131)
T ss_dssp TTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-
T ss_pred CCCcEEEEeccCCCCCC--ccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEEC
Confidence 35677777655322222 12344443 455556999999999999999999999997654333 456777665 99999
Q ss_pred CCCeeEEEecCCCcEEEEEEEeCC
Q 038563 131 RGLVHFQMNVGDTWATILGSFDSQ 154 (198)
Q Consensus 131 ~G~~H~~~N~g~~~~~~~~~~~s~ 154 (198)
+|..|.+.|.+++ +++++ +.+.
T Consensus 91 pg~w~~~~~~s~~-svlLv-~as~ 112 (131)
T PF05523_consen 91 PGVWHGIKNFSED-SVLLV-LASE 112 (131)
T ss_dssp TT-EEEEE---TT--EEEE-EESS
T ss_pred CchhhHhhccCCC-cEEEE-EcCC
Confidence 9999999999888 66665 4443
No 39
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.21 E-value=1.1e-05 Score=68.24 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=44.0
Q ss_pred CcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEec
Q 038563 83 GGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNV 140 (198)
Q Consensus 83 g~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~ 140 (198)
+...++||| +..|++||++|++.+.+ +|+ ...+++||++++|+|..|.....
T Consensus 33 ~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~~--~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQH-DYYEFTLVLTGRYYQEI---NGK--RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCccc-ccEEEEEEEeceEEEEE---CCE--EEEECCCcEEEeCCCCccceeee
Confidence 335689999 68999999999999887 466 56999999999999999976543
No 40
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=98.07 E-value=3e-05 Score=53.54 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=44.2
Q ss_pred eEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEE
Q 038563 73 MSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQM 138 (198)
Q Consensus 73 ls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~ 138 (198)
+++....-.||... .++. ..|++|||+|++++. +++|+ ..++++||++++|+|..-.+.
T Consensus 7 ~~~g~w~~~pg~~~-~~~~--~~E~~~vleG~v~it--~~~G~--~~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 7 FSAGVWECTPGKFP-WPYP--EDEFFYVLEGEVTIT--DEDGE--TVTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp EEEEEEEEECEEEE-EEES--SEEEEEEEEEEEEEE--ETTTE--EEEEETTEEEEE-TTEEEEEE
T ss_pred EEEEEEEECCceeE-eeCC--CCEEEEEEEeEEEEE--ECCCC--EEEEcCCcEEEECCCCEEEEE
Confidence 56666778886533 4444 499999999999976 34677 579999999999999865543
No 41
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.07 E-value=1.4e-05 Score=68.20 Aligned_cols=62 Identities=19% Similarity=0.153 Sum_probs=49.1
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecC
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVG 141 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g 141 (198)
.+.+.+ ..+....++||| +..|++||++|++++.+ +|+ .+.+++||+++||+|.+|.+...+
T Consensus 19 ~~~~~~--~~~~~~~~~H~H-~~~ei~~i~~G~~~~~i---~~~--~~~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 19 PVAVTN--RYPQETFVEHTH-QFCEIVIVWRGNGLHVL---NDH--PYRITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred ceEEec--CCCCCCCccccc-cceeEEEEecCceEEEE---CCe--eeeecCCeEEEEcCCCcccccccC
Confidence 455444 233445679999 68999999999999887 366 579999999999999999987643
No 42
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.05 E-value=9.2e-06 Score=62.29 Aligned_cols=64 Identities=22% Similarity=0.418 Sum_probs=51.9
Q ss_pred ecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEe
Q 038563 86 NVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFD 152 (198)
Q Consensus 86 ~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~ 152 (198)
.--|+|..+.|++.|++|+..+.+..++|. ...+.+||++++|+|.-|--. ...-+..++..+.
T Consensus 56 ~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliPAGvGH~rl-~sS~DF~VvGaYp 119 (163)
T COG4297 56 NYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIPAGVGHCRL-HSSADFQVVGAYP 119 (163)
T ss_pred ccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEecCcccccc-cCCCCeEEEcccC
Confidence 456999999999999999999999988888 458999999999999999643 3344555555553
No 43
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.00 E-value=2e-05 Score=66.75 Aligned_cols=58 Identities=19% Similarity=0.126 Sum_probs=46.9
Q ss_pred CcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcE
Q 038563 83 GGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWA 145 (198)
Q Consensus 83 g~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~ 145 (198)
+...++|||.+.-|++|+.+|++.+.+ +++ ...+++||++++|+|..|.+...++...
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~---~~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~ 90 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQL---DEH--EYSEYAPCFFLTPPSVPHGFVTDLDADG 90 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEE---CCE--EEEecCCeEEEeCCCCccccccCCCcce
Confidence 345789999546899999999998776 355 5699999999999999999876554433
No 44
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.97 E-value=3.2e-05 Score=66.99 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=45.0
Q ss_pred cEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCC
Q 038563 84 GVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGD 142 (198)
Q Consensus 84 ~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~ 142 (198)
...++||| +..|++||++|++.+.+ +++ ...+++||+++||+|.+|.+....+
T Consensus 59 ~~~~~H~H-~~~el~~v~~G~g~~~v---~~~--~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 59 DVFAEHTH-DFCELVIVWRGNGLHVL---NDR--PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCcccc-ceEEEEEEEcCeEEEEE---CCE--EEeecCCeEEEECCCCeecccccCC
Confidence 34689999 58999999999999877 356 5799999999999999999876444
No 45
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.95 E-value=1.6e-05 Score=68.26 Aligned_cols=91 Identities=24% Similarity=0.194 Sum_probs=72.1
Q ss_pred EEEEcccCCCCccccc-----eEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECC
Q 038563 57 SIPVNVNVFPGLNTLG-----MSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPR 131 (198)
Q Consensus 57 v~~~~~~~~P~l~~~g-----ls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~ 131 (198)
++.+-...-|+|++.. +-+..=-+.||.+.|.|.| +.+-+-||++|++-.+.++ |+ ...+++||+++-|+
T Consensus 71 ~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrH-sqsAlRFvveG~Ga~T~Vd--Ge--r~~M~~GDfilTP~ 145 (351)
T COG3435 71 VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRH-NQSALRFVVEGKGAYTVVD--GE--RTPMEAGDFILTPA 145 (351)
T ss_pred eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCcccc-cccceEEEEeccceeEeec--Cc--eeeccCCCEEEccC
Confidence 3344445778887652 1122234789999999999 5788999999999888884 55 46899999999999
Q ss_pred CCeeEEEecCCCcEEEEEEEe
Q 038563 132 GLVHFQMNVGDTWATILGSFD 152 (198)
Q Consensus 132 G~~H~~~N~g~~~~~~~~~~~ 152 (198)
+..|.--|.|.+|++++-.++
T Consensus 146 w~wHdHgn~g~eP~iWlDgLD 166 (351)
T COG3435 146 WTWHDHGNEGTEPCIWLDGLD 166 (351)
T ss_pred ceeccCCCCCCCceEEEcccc
Confidence 999999999999999986665
No 46
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.88 E-value=4.3e-05 Score=64.69 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=46.1
Q ss_pred eCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCC
Q 038563 81 DVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGD 142 (198)
Q Consensus 81 ~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~ 142 (198)
-|+...++||| +.-|++||++|++++.+ +++ ...+++||++++|+|.+|.+...++
T Consensus 26 ~~~~~~~~H~h-~~~~l~~v~~G~~~~~i---~~~--~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 26 YPQDVFAEHTH-EFCELVMVWRGNGLHVL---NER--PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCcccc-ceEEEEEEecCcEEEEE---CCE--EEeecCCcEEEECCCCcccccccCC
Confidence 44445789999 58999999999999876 366 5799999999999999999865443
No 47
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.87 E-value=3.4e-05 Score=60.82 Aligned_cols=57 Identities=28% Similarity=0.465 Sum_probs=50.5
Q ss_pred ecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCC
Q 038563 86 NVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDT 143 (198)
Q Consensus 86 ~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~ 143 (198)
-+.|.|. .+||-||+.|++.+-+.+.+++....-+++||++++|+|+-|.+.-+.++
T Consensus 86 fEEhlh~-deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n 142 (179)
T KOG2107|consen 86 FEEHLHE-DEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSN 142 (179)
T ss_pred HHHhcCc-hhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchH
Confidence 3789996 69999999999999999998888889999999999999999998765444
No 48
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.84 E-value=4.4e-05 Score=64.28 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=44.9
Q ss_pred CCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEec
Q 038563 82 VGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNV 140 (198)
Q Consensus 82 pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~ 140 (198)
+....++||| +..|++||++|++++.+. ++ ...+++||++++|++..|.....
T Consensus 24 ~~~~~~~H~H-~~~ei~~v~~G~~~~~i~---~~--~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHH-DFHEIVIVEHGTGIHVFN---GQ--PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred cccccccccc-CceeEEEEecCceeeEec---CC--cccccCCcEEEECCCccchhhhc
Confidence 3455789999 689999999999998874 44 57899999999999999987654
No 49
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.84 E-value=0.00028 Score=54.93 Aligned_cols=77 Identities=16% Similarity=0.112 Sum_probs=49.9
Q ss_pred EEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEeCCCC
Q 038563 77 RADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFDSQNP 156 (198)
Q Consensus 77 ~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~s~~p 156 (198)
++.=.|+.-.-.|..+ .+|++|-++|...+.+++. |+.....+++||+++.|++++|+-+... ..+-+++-....+
T Consensus 37 mvVGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e~-g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr~R~~ 112 (151)
T PF06052_consen 37 MVVGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVED-GKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIERKRPE 112 (151)
T ss_dssp EEEESSB--SSEEE-S-S-EEEEEEES-EEEEEEET-TEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE---T
T ss_pred EEEcCCCCCCccccCC-cceEEEEEeCcEEEEEEeC-CceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEeccCC
Confidence 3456777777889885 8999999999999999875 7767889999999999999999988754 4455555444333
Q ss_pred c
Q 038563 157 G 157 (198)
Q Consensus 157 g 157 (198)
|
T Consensus 113 ~ 113 (151)
T PF06052_consen 113 G 113 (151)
T ss_dssp T
T ss_pred C
Confidence 3
No 50
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.76 E-value=0.0002 Score=59.03 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=64.3
Q ss_pred eEEEEEEEeCCc-EecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEE
Q 038563 73 MSMVRADFDVGG-VNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSF 151 (198)
Q Consensus 73 ls~~~~~l~pg~-~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~ 151 (198)
.+-..+++.|+| .-.+-.-++++-++||++|++.+.+. |+ +..|++|+..++|+|..|.+.|...+++.+.++-
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~---G~--th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~r 135 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAE---GK--THALREGGYAYLPPGSGWTLRNAQKEDSRFHWIR 135 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEc---Ce--EEEeccCCeEEeCCCCcceEeeccCCceEEEEEe
Confidence 455678898877 56777777888899999999999874 77 6799999999999999999999999999988776
Q ss_pred e
Q 038563 152 D 152 (198)
Q Consensus 152 ~ 152 (198)
.
T Consensus 136 k 136 (264)
T COG3257 136 K 136 (264)
T ss_pred e
Confidence 4
No 51
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.63 E-value=0.0005 Score=53.98 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=43.0
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEe
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMN 139 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N 139 (198)
.|++...+++.. +.-|.-...|+.|||+|++.+.. +|+ ....++||+++||+|.-=.+..
T Consensus 76 ~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~---~G~--~~~A~~GDvi~iPkGs~I~fst 135 (152)
T PF06249_consen 76 RLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI---DGQ--TVTAKPGDVIFIPKGSTITFST 135 (152)
T ss_dssp SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE---TTE--EEEEETT-EEEE-TT-EEEEEE
T ss_pred ceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE---CCE--EEEEcCCcEEEECCCCEEEEec
Confidence 356666677753 46688889999999999998763 477 5689999999999997655543
No 52
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.56 E-value=0.0011 Score=53.25 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=56.9
Q ss_pred CCcEecceeCCCC-CEEEEEEecEEEEEEEeCC------CeEEEEEEeCC--cEEEECCCCeeEEEecCCCcEEEEE
Q 038563 82 VGGVNVPHFHPRA-TEIAVVLEGKIYSGFVDTQ------NRIFAKVIEKG--EVMVFPRGLVHFQMNVGDTWATILG 149 (198)
Q Consensus 82 pg~~~~pH~Hp~a-~Ei~yVl~G~~~~~~~~~~------~~~~~~~l~~G--d~~~iP~G~~H~~~N~g~~~~~~~~ 149 (198)
+|-+..+|+|..- .+++.|++|++..-++|-- |+....+|.+- ..+.||+|..|-++|.+++..+++.
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~ 130 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYK 130 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEE
Confidence 8899999999877 8999999999998888721 46666777766 7999999999999999998754444
No 53
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.55 E-value=0.00037 Score=61.33 Aligned_cols=87 Identities=16% Similarity=0.034 Sum_probs=63.5
Q ss_pred CCeEEEEEcccCCC-CccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECC
Q 038563 53 TGLASIPVNVNVFP-GLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPR 131 (198)
Q Consensus 53 ~g~~v~~~~~~~~P-~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~ 131 (198)
.|-.+...|..+-+ ...+++..+ -.|++|....+|-| ..+.+++|++|+++..+. ++ ....++||+|++|.
T Consensus 231 ~g~~l~y~NP~TG~~~~pti~~~~--q~L~~G~~t~~~r~-T~s~Vf~VieG~G~s~ig---~~--~~~W~~gD~f~vPs 302 (335)
T TIGR02272 231 HGLKLRYVNPATGGYPMPTIGAFI--QLLPKGFRTATYRS-TDATVFCVVEGRGQVRIG---DA--VFRFSPKDVFVVPS 302 (335)
T ss_pred ceEEEEEeCCCCCCCcchhHHHHH--hccCCCCCCCCccc-cccEEEEEEeCeEEEEEC---CE--EEEecCCCEEEECC
Confidence 34456666644433 334444444 46889999999999 579999999999999883 55 57899999999999
Q ss_pred CCeeEEEecCCCcEEEEE
Q 038563 132 GLVHFQMNVGDTWATILG 149 (198)
Q Consensus 132 G~~H~~~N~g~~~~~~~~ 149 (198)
-..|...|. +++.++.
T Consensus 303 W~~~~h~a~--~da~Lf~ 318 (335)
T TIGR02272 303 WHPVRFEAS--DDAVLFS 318 (335)
T ss_pred CCcEecccC--CCeEEEE
Confidence 988877764 4555443
No 54
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=97.35 E-value=0.0028 Score=51.00 Aligned_cols=69 Identities=16% Similarity=0.258 Sum_probs=55.2
Q ss_pred EeCCcEecceeCCCC---CEEEEEEecEEEEEEEe--C----CCeEEEEEEeCCc--EEEECCCCeeEEEecCCCcEEEE
Q 038563 80 FDVGGVNVPHFHPRA---TEIAVVLEGKIYSGFVD--T----QNRIFAKVIEKGE--VMVFPRGLVHFQMNVGDTWATIL 148 (198)
Q Consensus 80 l~pg~~~~pH~Hp~a---~Ei~yVl~G~~~~~~~~--~----~~~~~~~~l~~Gd--~~~iP~G~~H~~~N~g~~~~~~~ 148 (198)
-.+|.+..+|.|... ..++.|++|++..-++| . -|+.....|.+++ .++||+|..|.+.+.+++..+++
T Consensus 50 s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y 129 (176)
T PF00908_consen 50 SKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLY 129 (176)
T ss_dssp EETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEE
T ss_pred ccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEE
Confidence 345889999999654 68999999999998887 2 2788889998887 79999999999999987744444
No 55
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=97.28 E-value=0.00086 Score=50.33 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=45.2
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEE
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQM 138 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~ 138 (198)
.+......-.||.. +++-...|+.++|+|++++. .++|+ ..++++||.++||+|..=.+.
T Consensus 44 ~~~~GiWe~TpG~~---r~~y~~~E~chil~G~v~~T--~d~Ge--~v~~~aGD~~~~~~G~~g~W~ 103 (116)
T COG3450 44 QVETGIWECTPGKF---RVTYDEDEFCHILEGRVEVT--PDGGE--PVEVRAGDSFVFPAGFKGTWE 103 (116)
T ss_pred CeeEeEEEecCccc---eEEcccceEEEEEeeEEEEE--CCCCe--EEEEcCCCEEEECCCCeEEEE
Confidence 35555566666654 46656799999999999865 44577 569999999999999875544
No 56
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=97.22 E-value=0.0089 Score=47.88 Aligned_cols=83 Identities=16% Similarity=0.092 Sum_probs=57.1
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCC-C---e----EEEEEEeCCcEEEECCCCeeEEEecC-C
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQ-N---R----IFAKVIEKGEVMVFPRGLVHFQMNVG-D 142 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~-~---~----~~~~~l~~Gd~~~iP~G~~H~~~N~g-~ 142 (198)
..++..+...||...+.|=|..+.=++.|++|+++-...... + . .....+..|...+++.+.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 467888899999999999997666788999999887655322 2 1 12345678888889999999999887 8
Q ss_pred CcEEEEEEEeCC
Q 038563 143 TWATILGSFDSQ 154 (198)
Q Consensus 143 ~~~~~~~~~~s~ 154 (198)
++++-+=+++.+
T Consensus 154 ~~avSLHvYspP 165 (175)
T PF05995_consen 154 EPAVSLHVYSPP 165 (175)
T ss_dssp S-EEEEEEEES-
T ss_pred CCEEEEEEcCCC
Confidence 888888788754
No 57
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=97.18 E-value=0.0045 Score=49.79 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=55.9
Q ss_pred eCCcEecceeCC--CCCEEEEEEecEEEEEEEeC------CCeEEEEEEeC--CcEEEECCCCeeEEEecCCCcEEEEE
Q 038563 81 DVGGVNVPHFHP--RATEIAVVLEGKIYSGFVDT------QNRIFAKVIEK--GEVMVFPRGLVHFQMNVGDTWATILG 149 (198)
Q Consensus 81 ~pg~~~~pH~Hp--~a~Ei~yVl~G~~~~~~~~~------~~~~~~~~l~~--Gd~~~iP~G~~H~~~N~g~~~~~~~~ 149 (198)
.+|.+..+|.|. ....+++|++|++..-++|- -|+.....|.+ +..++||+|..|.+.+.+++....+.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEe
Confidence 568899999993 36889999999999988873 26777788887 55999999999999999877444443
No 58
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.98 E-value=0.016 Score=52.45 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=54.1
Q ss_pred cccCceEEeccccC--CCcC-CCCeEEEEEcccCCCCccccceEEEEEEEeCCcE-ecceeCCCCCEEEEEEecEEEEEE
Q 038563 34 VTVEDFVFSGIKFR--GKFS-ETGLASIPVNVNVFPGLNTLGMSMVRADFDVGGV-NVPHFHPRATEIAVVLEGKIYSGF 109 (198)
Q Consensus 34 ~~~~df~~~~~~~~--~~~~-~~g~~v~~~~~~~~P~l~~~gls~~~~~l~pg~~-~~pH~Hp~a~Ei~yVl~G~~~~~~ 109 (198)
.+++.+.|..+..+ ..+. -.|-. +.. ....|..+. |+.+...... ..| ...-.+-+++|++++.+|++++.
T Consensus 86 ~~p~~lrw~p~~~p~~~~~dfvdgl~-ti~-g~gd~~~~~-g~ai~~y~~~-~sM~~~~f~NaDGD~Li~~q~G~l~l~- 160 (424)
T PF04209_consen 86 PTPNQLRWDPFPIPSDEPTDFVDGLR-TIA-GAGDPLSNN-GVAIHVYAAN-ASMDDRAFRNADGDELIFPQQGSLRLE- 160 (424)
T ss_dssp ---S-EEE-S----TT----TTTTEE-EEE-EECECCCTE-EEEEEEEEE--S---SEEEEESSEEEEEEEEES-EEEE-
T ss_pred CCccccccCCCCCCCcCCCCcccccc-ccc-cCccccccC-CcEEEEEEcC-CCCCCcceEcCCCCEEEEEEECCEEEE-
Confidence 36778888876554 2333 34432 232 334554432 4444322222 234 33444668999999999998864
Q ss_pred EeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEe
Q 038563 110 VDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFD 152 (198)
Q Consensus 110 ~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~ 152 (198)
++-|+ ..+++||+++||+|+.+.+.-.|.....++.++.
T Consensus 161 -Te~G~---L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E~~~ 199 (424)
T PF04209_consen 161 -TEFGR---LDVRPGDYVVIPRGTRFRVELPGPARGYIIENFG 199 (424)
T ss_dssp -ETTEE---EEE-TTEEEEE-TT--EEEE-SSSEEEEEEEEES
T ss_pred -ecCee---EEEcCCeEEEECCeeEEEEEeCCCceEEEEEcCC
Confidence 45676 4799999999999999998766433334444443
No 59
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.95 E-value=0.0084 Score=49.22 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=47.6
Q ss_pred EEEEEeC-CcEecceeCCCCCEEEEEEecEEEEEEEeCC--------C---------------------------eEEEE
Q 038563 76 VRADFDV-GGVNVPHFHPRATEIAVVLEGKIYSGFVDTQ--------N---------------------------RIFAK 119 (198)
Q Consensus 76 ~~~~l~p-g~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~--------~---------------------------~~~~~ 119 (198)
..+-+.+ |...++|+.+ ..-++.+++|+=++.+..+. . +....
T Consensus 133 ~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~ 211 (251)
T PF13621_consen 133 SNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEV 211 (251)
T ss_dssp EEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEE
T ss_pred cEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEE
Confidence 3455566 5578999986 67888999999888776543 0 23578
Q ss_pred EEeCCcEEEECCCCeeEEEecCCCc
Q 038563 120 VIEKGEVMVFPRGLVHFQMNVGDTW 144 (198)
Q Consensus 120 ~l~~Gd~~~iP~G~~H~~~N~g~~~ 144 (198)
+|++||+++||+|..|++.|..+++
T Consensus 212 ~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 212 VLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EECCCeEEEECCCCeEEEEEcCCCC
Confidence 9999999999999999999984343
No 60
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.80 E-value=0.009 Score=46.79 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=44.8
Q ss_pred eEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCC
Q 038563 73 MSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGD 142 (198)
Q Consensus 73 ls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~ 142 (198)
+++...+.++ . ..-|--+-+|+-|||+|++.+.+ +|+ +..-++||+++||+|..--+.-.|.
T Consensus 100 l~aG~m~~~~-~--tf~wtl~yDe~d~VlEGrL~V~~---~g~--tv~a~aGDvifiPKgssIefst~ge 161 (176)
T COG4766 100 LGAGLMEMKN-T--TFPWTLNYDEIDYVLEGRLHVRI---DGR--TVIAGAGDVIFIPKGSSIEFSTTGE 161 (176)
T ss_pred cccceeeecc-c--cCcceecccceeEEEeeeEEEEE---cCC--eEecCCCcEEEecCCCeEEEeccce
Confidence 4444455665 2 23345578999999999999876 366 4578999999999998766665544
No 61
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=96.40 E-value=0.023 Score=51.51 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=44.8
Q ss_pred ecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEE
Q 038563 86 NVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGS 150 (198)
Q Consensus 86 ~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~ 150 (198)
...-.+-+++|++++.+|++++. ++-|+ ..+++||++|||+|+.+.+.- .+.++..+++
T Consensus 146 ~~~f~NaDGD~Livpq~G~l~i~--TEfG~---L~v~pgei~VIPRG~~frv~l-~~gp~rgyi~ 204 (438)
T PRK05341 146 DRYFYNADGELLIVPQQGRLRLA--TELGV---LDVEPGEIAVIPRGVKFRVEL-PDGPARGYVC 204 (438)
T ss_pred cceeecCCCCEEEEEEeCCEEEE--Eeccc---eEecCCCEEEEcCccEEEEec-CCCCeeEEEE
Confidence 44555678999999999999865 44576 578999999999999988873 3445555444
No 62
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=96.36 E-value=0.049 Score=45.22 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=44.6
Q ss_pred EEEEeCCcEecceeCCCCCEEEEEEe-cEEEEEEEeCC----------------CeEE------EEEEeCCcEEEECCCC
Q 038563 77 RADFDVGGVNVPHFHPRATEIAVVLE-GKIYSGFVDTQ----------------NRIF------AKVIEKGEVMVFPRGL 133 (198)
Q Consensus 77 ~~~l~pg~~~~pH~Hp~a~Ei~yVl~-G~~~~~~~~~~----------------~~~~------~~~l~~Gd~~~iP~G~ 133 (198)
.+-+.+|...|.|.|..-.|=++.-- |.+.+.+...+ |+.. ...|+||+.+-+++|+
T Consensus 91 im~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~ 170 (225)
T PF07385_consen 91 IMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGI 170 (225)
T ss_dssp EEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTE
T ss_pred heeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCC
Confidence 35678999999999998888776654 56655554321 2111 4689999999999999
Q ss_pred eeEEEecCCCcEEEEEEEe
Q 038563 134 VHFQMNVGDTWATILGSFD 152 (198)
Q Consensus 134 ~H~~~N~g~~~~~~~~~~~ 152 (198)
.|+++..+.. +++.=+|
T Consensus 171 yH~Fw~e~g~--vLigEVS 187 (225)
T PF07385_consen 171 YHWFWGEGGD--VLIGEVS 187 (225)
T ss_dssp EEEEEE-TTS--EEEEEEE
T ss_pred eeeEEecCCC--EEEEeee
Confidence 9999975544 4444344
No 63
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=96.20 E-value=0.043 Score=40.57 Aligned_cols=61 Identities=31% Similarity=0.347 Sum_probs=44.4
Q ss_pred CcEecceeCCCCCEEE-EEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCC--CeeEEEecCC-CcEEEE
Q 038563 83 GGVNVPHFHPRATEIA-VVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRG--LVHFQMNVGD-TWATIL 148 (198)
Q Consensus 83 g~~~~pH~Hp~a~Ei~-yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G--~~H~~~N~g~-~~~~~~ 148 (198)
+...++|-|. ..|++ ||++|+++- .|+.|. ..+|++||+-.+-+| +.|...|.++ +++.++
T Consensus 39 ~~gf~~HPH~-g~eivTyv~~G~~~H--~Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHR-GFEIVTYVLEGELRH--RDSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp TTEEEEEEEC-SEEEEEEEEESEEEE--EETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCCCcCCC-CceEEEEEecCEEEE--ECCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 5566899995 56655 899999875 476676 468999998887765 8999999887 666554
No 64
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=96.18 E-value=0.019 Score=48.74 Aligned_cols=92 Identities=16% Similarity=0.124 Sum_probs=51.7
Q ss_pred CCCeEEEEEcccCCCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECC
Q 038563 52 ETGLASIPVNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPR 131 (198)
Q Consensus 52 ~~g~~v~~~~~~~~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~ 131 (198)
..|..++.+- ..|.-. ++.-..++|+.|.-..+|+|+ ..|-.|||+|++..+.-...+ ...|.+|..+--|.
T Consensus 154 ~~g~~~a~Lw--gd~~~g--~~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~~~---~~~L~~GSYf~s~~ 225 (251)
T PF14499_consen 154 PPGAQIAFLW--GDPNTG--QYTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGASN---FGTLDPGSYFGSPG 225 (251)
T ss_dssp T-SEEEEEEE--E-TTS---EE-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEET---TEEEEE-TT-EE--
T ss_pred CCcceEEEEe--cCCCCC--ceeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecccCC---CccccCCcccccCC
Confidence 4566655554 222222 455667788888889999995 799999999999986532111 36899999999999
Q ss_pred CCeeEEEecCCCcEEEEEEEe
Q 038563 132 GLVHFQMNVGDTWATILGSFD 152 (198)
Q Consensus 132 G~~H~~~N~g~~~~~~~~~~~ 152 (198)
...|... .+++++++|+..+
T Consensus 226 ~~~H~~~-~~e~~~vlyIRtd 245 (251)
T PF14499_consen 226 HITHGIF-ITEDECVLYIRTD 245 (251)
T ss_dssp E-------EESS-EEEEEEES
T ss_pred ccccccc-ccCCCEEEEEEEC
Confidence 9999998 7888898887654
No 65
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.17 E-value=0.018 Score=49.89 Aligned_cols=91 Identities=20% Similarity=0.104 Sum_probs=64.6
Q ss_pred CCCeEEEEEcccCCCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECC
Q 038563 52 ETGLASIPVNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPR 131 (198)
Q Consensus 52 ~~g~~v~~~~~~~~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~ 131 (198)
-.|..++.+|..+= +-.---|.+.+--|+||-...+|-|. .+-++-|.+|++.+.+. |+ ++.-++||+|++|.
T Consensus 241 ~dG~~~ryvNP~TG-g~~mptI~a~mqlL~~Gf~~~~~r~t-~s~iy~V~eGsg~~~Ig---~~--rf~~~~~D~fvVPs 313 (351)
T COG3435 241 FDGYKMRYVNPVTG-GYAMPTIGAFMQLLPPGFHGKAHRHT-DSTIYHVVEGSGYTIIG---GE--RFDWSAGDIFVVPS 313 (351)
T ss_pred CCcceEEEecCCCC-CCcCchHHHHHHhcCCcccCCceecc-CCEEEEEEecceeEEEC---CE--EeeccCCCEEEccC
Confidence 45666666663321 11111223333358889889999995 57788999999998873 66 56889999999999
Q ss_pred CCeeEEEecCCCcEEEEEE
Q 038563 132 GLVHFQMNVGDTWATILGS 150 (198)
Q Consensus 132 G~~H~~~N~g~~~~~~~~~ 150 (198)
=..|...|. .+++.+++.
T Consensus 314 W~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 314 WAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred cceeecccC-CcceEEEec
Confidence 999999985 667776653
No 66
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=96.02 E-value=0.043 Score=49.69 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=46.3
Q ss_pred ecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEe
Q 038563 86 NVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFD 152 (198)
Q Consensus 86 ~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~ 152 (198)
...-..-+++|++++.+|++.+. ++-|+ ..+++||+++||+|+.+.+.=.|.....++.++.
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~--TEfG~---L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLIT--TEFGR---LLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEE--Eeccc---eEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 44555668999999999999865 34576 5789999999999999988765533344444444
No 67
>PLN02658 homogentisate 1,2-dioxygenase
Probab=95.99 E-value=0.05 Score=49.39 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=43.5
Q ss_pred ecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEE
Q 038563 86 NVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILG 149 (198)
Q Consensus 86 ~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~ 149 (198)
...-.+-+++|++++.+|++.+. ++-|+ ..+++||+++||+|+.+.+.=. ++++..++
T Consensus 139 ~~~f~NaDGD~Livpq~G~l~i~--TEfG~---L~v~pgei~VIPRG~~frv~l~-~gp~rgyv 196 (435)
T PLN02658 139 DCAFCNADGDFLIVPQQGRLWIK--TELGK---LQVSPGEIVVIPRGFRFAVDLP-DGPSRGYV 196 (435)
T ss_pred cceeecCCCCEEEEEEeCCEEEE--Eeccc---eEecCCCEEEecCccEEEEecC-CCCeeEEE
Confidence 34456679999999999999865 44576 5789999999999999887632 34544443
No 68
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.94 E-value=0.058 Score=38.94 Aligned_cols=71 Identities=28% Similarity=0.350 Sum_probs=33.6
Q ss_pred EEEeCCcEecceeCCCCC--EEEEEE--ecEEEEEEEeCC------------------CeEEEEEEeCCcEEEECCCCee
Q 038563 78 ADFDVGGVNVPHFHPRAT--EIAVVL--EGKIYSGFVDTQ------------------NRIFAKVIEKGEVMVFPRGLVH 135 (198)
Q Consensus 78 ~~l~pg~~~~pH~Hp~a~--Ei~yVl--~G~~~~~~~~~~------------------~~~~~~~l~~Gd~~~iP~G~~H 135 (198)
...++|+..++|.|+++. =++||- ++...+.+.++. ........++||+++||.-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 456789999999998653 133332 122223333321 1234568899999999999999
Q ss_pred EEE-ecCCCcEEEE
Q 038563 136 FQM-NVGDTWATIL 148 (198)
Q Consensus 136 ~~~-N~g~~~~~~~ 148 (198)
... |.++++-+-|
T Consensus 85 ~v~p~~~~~~Risi 98 (101)
T PF13759_consen 85 GVPPNNSDEERISI 98 (101)
T ss_dssp EE----SSS-EEEE
T ss_pred eccCcCCCCCEEEE
Confidence 975 4455444333
No 69
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.71 E-value=0.15 Score=44.49 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=46.1
Q ss_pred EEEEEEEeCCc--EecceeCCCCCEEEEEEecEEEEEEEeCC------------------CeEEEEEEeCCcEEEECCCC
Q 038563 74 SMVRADFDVGG--VNVPHFHPRATEIAVVLEGKIYSGFVDTQ------------------NRIFAKVIEKGEVMVFPRGL 133 (198)
Q Consensus 74 s~~~~~l~pg~--~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~------------------~~~~~~~l~~Gd~~~iP~G~ 133 (198)
..+-+.+.|++ ...||+=. ..-+++=+.|+=+..+.... ......+|++||++|+|+|.
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence 34445788888 68888773 44455557788776665521 11346899999999999999
Q ss_pred eeEEEecCCCcEEEEEEEe
Q 038563 134 VHFQMNVGDTWATILGSFD 152 (198)
Q Consensus 134 ~H~~~N~g~~~~~~~~~~~ 152 (198)
+|.....+ .-+.+=..+.
T Consensus 193 ~H~~~~~~-~S~hltv~~~ 210 (319)
T PF08007_consen 193 WHQAVTTD-PSLHLTVGFR 210 (319)
T ss_dssp EEEEEESS--EEEEEEEEC
T ss_pred cCCCCCCC-CceEEEEeee
Confidence 99999988 4344433343
No 70
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=95.51 E-value=0.18 Score=39.77 Aligned_cols=71 Identities=21% Similarity=0.220 Sum_probs=43.8
Q ss_pred EEEEEEEeCCcEecceeCCCCCEEE--EEEe---cEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEE
Q 038563 74 SMVRADFDVGGVNVPHFHPRATEIA--VVLE---GKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATIL 148 (198)
Q Consensus 74 s~~~~~l~pg~~~~pH~Hp~a~Ei~--yVl~---G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~ 148 (198)
.+....+.||+.+.||.-+....+- +.|. ..+.+.+ +++ ....++|++++|--...|...|.|+++-+.+
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v---~~~--~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L 155 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV---GGE--TRHWREGECWVFDDSFEHEVWNNGDEDRVVL 155 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE---TTE--EEB--CTEEEEE-TTS-EEEEESSSS-EEEE
T ss_pred hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE---CCe--EEEeccCcEEEEeCCEEEEEEeCCCCCEEEE
Confidence 3555578999999999886433311 1222 2233333 244 5688999999999999999999998876655
Q ss_pred E
Q 038563 149 G 149 (198)
Q Consensus 149 ~ 149 (198)
.
T Consensus 156 ~ 156 (163)
T PF05118_consen 156 I 156 (163)
T ss_dssp E
T ss_pred E
Confidence 4
No 71
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=95.48 E-value=0.1 Score=42.85 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=59.5
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCC----------eEEEEE------E-eCCc-EEEECCC-
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQN----------RIFAKV------I-EKGE-VMVFPRG- 132 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~----------~~~~~~------l-~~Gd-~~~iP~G- 132 (198)
.+++..+-|+||..+|+|=||.-.-+.-||.|++.+.-.|--. +..... + .+++ +++.|..
T Consensus 43 ~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~~g 122 (200)
T PF07847_consen 43 DFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPTSG 122 (200)
T ss_pred CcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccCCC
Confidence 5778888899999999999998888888999999987654211 111111 1 2223 5666764
Q ss_pred -CeeEEEecCCCcEEEEEEEeC
Q 038563 133 -LVHFQMNVGDTWATILGSFDS 153 (198)
Q Consensus 133 -~~H~~~N~g~~~~~~~~~~~s 153 (198)
-+|.+.+.+ +++.++-++..
T Consensus 123 gNiH~f~a~~-~p~AflDIL~P 143 (200)
T PF07847_consen 123 GNIHEFTALT-GPCAFLDILAP 143 (200)
T ss_pred CeeEEEEeCC-CCeEEEEEccC
Confidence 899999987 89999988874
No 72
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=95.43 E-value=0.05 Score=44.42 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=61.3
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEE
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSF 151 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~ 151 (198)
..+++++.+.||...|-|+| -+-|.+.|++|.. .|++| ++.+||+..-+.+.-|.-.-..+.++..++++
T Consensus 127 s~~V~llki~~g~s~P~HtH-~G~E~t~vl~G~~----sde~G-----~y~vgD~~~~d~~v~H~piv~~~~eClcl~al 196 (216)
T COG3806 127 SRRVALLKIEPGRSFPDHTH-VGIERTAVLEGAF----SDENG-----EYLVGDFTLADGTVQHSPIVLPPGECLCLAAL 196 (216)
T ss_pred CceeEEEEeccCcccccccc-cceEEEEEEeecc----ccCCC-----ccccCceeecCCccccccccCCCCCceEEEEc
Confidence 56899999999999999999 6899999999975 46666 46899999999999999777778888888877
Q ss_pred eC
Q 038563 152 DS 153 (198)
Q Consensus 152 ~s 153 (198)
+-
T Consensus 197 ~~ 198 (216)
T COG3806 197 DG 198 (216)
T ss_pred CC
Confidence 53
No 73
>PF12852 Cupin_6: Cupin
Probab=95.33 E-value=0.13 Score=40.85 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=35.5
Q ss_pred CEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCC
Q 038563 95 TEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGD 142 (198)
Q Consensus 95 ~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~ 142 (198)
.-+.+|++|++.+.+-+ .++ ...|++||++++|+|..|.+.....
T Consensus 36 ~~fh~V~~G~~~l~~~~-~~~--~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPG-GGE--PIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred eEEEEEECCeEEEEEcC-CCC--eEEecCCCEEEEcCCCCeEeCCCCC
Confidence 66788999999988632 133 5799999999999999999954333
No 74
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=95.27 E-value=0.08 Score=44.90 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=38.5
Q ss_pred ceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCC
Q 038563 88 PHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGD 142 (198)
Q Consensus 88 pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~ 142 (198)
||-+ ++-++.++++|++.+.+ +++ ...+++||++++|+|.+|......+
T Consensus 44 ~~~~-~~~~i~~~~~G~~~~~~---~~~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 44 PLGM-KGYILNLTIRGQGVIFN---GGR--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred CCCc-cceEEEEEEeccEEEec---CCe--eEecCCCCEEEECCCCceeeccCCC
Confidence 4444 46788999999999764 355 5799999999999999998766444
No 75
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=95.19 E-value=0.25 Score=35.70 Aligned_cols=65 Identities=17% Similarity=0.054 Sum_probs=42.1
Q ss_pred EEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEE
Q 038563 79 DFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSF 151 (198)
Q Consensus 79 ~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~ 151 (198)
.+.||. .+....+.|++-|++|++++.+- |...+..+++|+.|.+|++..-.++-. ++...++.|
T Consensus 29 Vm~pGe---Y~F~T~~~E~M~vvsG~l~V~lp---g~~ew~~~~aGesF~VpanssF~v~v~--~~~~Y~C~y 93 (94)
T PF06865_consen 29 VMLPGE---YTFGTSAPERMEVVSGELEVKLP---GEDEWQTYSAGESFEVPANSSFDVKVK--EPTAYLCSY 93 (94)
T ss_dssp EE-SEC---EEEEESS-EEEEEEESEEEEEET---T-SS-EEEETT-EEEE-TTEEEEEEES--S-EEEEEEE
T ss_pred EEeeeE---EEEcCCCCEEEEEEEeEEEEEcC---CCcccEEeCCCCeEEECCCCeEEEEEC--cceeeEEEe
Confidence 456665 23334479999999999999884 333367999999999999988777653 455555543
No 76
>PRK10579 hypothetical protein; Provisional
Probab=94.97 E-value=0.51 Score=34.11 Aligned_cols=63 Identities=19% Similarity=0.125 Sum_probs=45.5
Q ss_pred EeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEE
Q 038563 80 FDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGS 150 (198)
Q Consensus 80 l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~ 150 (198)
+.||. .+.-..+.|++-|++|++++.+- |...+..+++|+.|.+|++..-.++.. +....++.
T Consensus 30 m~pGe---y~F~T~~~E~MeivsG~l~V~Lp---g~~ew~~~~aG~sF~VpanssF~l~v~--~~t~Y~C~ 92 (94)
T PRK10579 30 MAEGE---YTFSTAEPEEMTVISGALNVLLP---GATDWQVYEAGEVFNVPGHSEFHLQVA--EPTSYLCR 92 (94)
T ss_pred EeeeE---EEEcCCCcEEEEEEeeEEEEECC---CCcccEEeCCCCEEEECCCCeEEEEEC--cceeeEEE
Confidence 44554 33344589999999999999874 434468999999999999988776652 34444443
No 77
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=94.79 E-value=0.14 Score=41.58 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=46.5
Q ss_pred EEEeCCcEecceeCCCCCEEEEE-EecEEEEEEEeC----------------CCeEE------EEEEeCCcEEEECCCCe
Q 038563 78 ADFDVGGVNVPHFHPRATEIAVV-LEGKIYSGFVDT----------------QNRIF------AKVIEKGEVMVFPRGLV 134 (198)
Q Consensus 78 ~~l~pg~~~~pH~Hp~a~Ei~yV-l~G~~~~~~~~~----------------~~~~~------~~~l~~Gd~~~iP~G~~ 134 (198)
..+.+|...|+|.|++..|=+.= -.|++.+.+... +|+.. ...|++|+.+.+|+|..
T Consensus 91 M~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~~ 170 (225)
T COG3822 91 MHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGLY 170 (225)
T ss_pred EEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCce
Confidence 45789999999999866663321 223333332211 12111 36899999999999999
Q ss_pred eEEEecCCCcEEEEEEEeC
Q 038563 135 HFQMNVGDTWATILGSFDS 153 (198)
Q Consensus 135 H~~~N~g~~~~~~~~~~~s 153 (198)
|+++.-+.. +++.=.++
T Consensus 171 HsFwae~g~--vlvgEvSs 187 (225)
T COG3822 171 HSFWAEEGG--VLVGEVSS 187 (225)
T ss_pred eeeeecCCc--EEEEEEee
Confidence 999975443 44443443
No 78
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=94.70 E-value=0.18 Score=41.32 Aligned_cols=72 Identities=24% Similarity=0.229 Sum_probs=43.0
Q ss_pred EEEEEEEeCCcEecceeCCCCC--EEEEEE--ecEEEEEEEeCC-----------------C-eEEEEEEeCCcEEEECC
Q 038563 74 SMVRADFDVGGVNVPHFHPRAT--EIAVVL--EGKIYSGFVDTQ-----------------N-RIFAKVIEKGEVMVFPR 131 (198)
Q Consensus 74 s~~~~~l~pg~~~~pH~Hp~a~--Ei~yVl--~G~~~~~~~~~~-----------------~-~~~~~~l~~Gd~~~iP~ 131 (198)
.+-...+++|+....|.||++. =++||- .|.....|.++. . ......-++|++++||.
T Consensus 97 ~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS 176 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFES 176 (201)
T ss_pred eEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECC
Confidence 4555678899999999998752 233433 111122222211 0 01123448999999999
Q ss_pred CCeeEEE-ecCCCcE
Q 038563 132 GLVHFQM-NVGDTWA 145 (198)
Q Consensus 132 G~~H~~~-N~g~~~~ 145 (198)
-+.|... |.++++-
T Consensus 177 ~L~H~v~p~~~~~~R 191 (201)
T TIGR02466 177 WLRHEVPPNESEEER 191 (201)
T ss_pred CCceecCCCCCCCCE
Confidence 9999975 5554443
No 79
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=94.67 E-value=0.32 Score=41.33 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=45.9
Q ss_pred ceEEEEEEEeCCcEe-----cceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCC
Q 038563 72 GMSMVRADFDVGGVN-----VPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGD 142 (198)
Q Consensus 72 gls~~~~~l~pg~~~-----~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~ 142 (198)
++.+.++...+..+. ..|.+.+.--++++++|++.+.. +|+ ...+++||+++++.+.+|.+.-.++
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~---~g~--~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ---DDR--QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE---CCe--EEEEcCCCEEEEECCCCcEeecCCC
Confidence 456666666664432 23444444557788999998775 366 5689999999999999998765443
No 80
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=94.64 E-value=0.13 Score=40.83 Aligned_cols=70 Identities=20% Similarity=0.179 Sum_probs=44.6
Q ss_pred eEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCC------eEEEEEEeCCcEEEECCCCeeEEEecCCCc
Q 038563 73 MSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQN------RIFAKVIEKGEVMVFPRGLVHFQMNVGDTW 144 (198)
Q Consensus 73 ls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~------~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~ 144 (198)
+++..+++.||...|+|-| .-.-++=|+.|.-+-.+-.-++ .-..+.+.+|++- ..+|.+|.+.|.+...
T Consensus 73 ltV~~~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdr 148 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNH-LMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDR 148 (191)
T ss_pred EEEEEEEeCCCcccCCccc-chheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCc
Confidence 7899999999999999999 6777888888875433321111 0012345556555 3336666666655553
No 81
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.44 E-value=0.12 Score=44.39 Aligned_cols=58 Identities=33% Similarity=0.423 Sum_probs=46.7
Q ss_pred EEEeCCcEecceeCCCCCEEE-EEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCC--CeeEEEec
Q 038563 78 ADFDVGGVNVPHFHPRATEIA-VVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRG--LVHFQMNV 140 (198)
Q Consensus 78 ~~l~pg~~~~pH~Hp~a~Ei~-yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G--~~H~~~N~ 140 (198)
..+.||.-.+||-|. ..|++ ||++|+++.. |+.|. ..++++||+-.+-+| +.|+-.|.
T Consensus 49 ~~~~pG~~f~pHPHr-g~etvTyvl~G~i~Hr--DS~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~ 109 (276)
T COG1741 49 DVLAPGRGFPPHPHR-GLETVTYVLDGEIEHR--DSLGN--KGVIRPGDVQWMTAGSGIVHSEMNP 109 (276)
T ss_pred ccccCCCcCCCCCCC-CcEEEEEEEccEEEEe--ecCCc--eeeecccceeEEcCCCceeecccCC
Confidence 458899999999995 56655 9999998754 66565 468999998888765 79999986
No 82
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=94.42 E-value=0.37 Score=35.03 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=43.8
Q ss_pred EEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEe
Q 038563 76 VRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFD 152 (198)
Q Consensus 76 ~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~ 152 (198)
..++++||+......-+...-++||++|++.+. ++. ..+.+|+++++..|..=.+.+.+ +.+.++.+-.
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-----~~~--~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~G 70 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-----GEE--DPLEAGQLVVLEDGDEIELTAGE-EGARFLLLGG 70 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-----TTT--EEEETTEEEEE-SECEEEEEESS-SSEEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-----CCc--ceECCCcEEEECCCceEEEEECC-CCcEEEEEEc
Confidence 457889998654333334466899999998652 331 47899999999976666666653 6676665443
No 83
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.33 E-value=0.23 Score=42.45 Aligned_cols=61 Identities=10% Similarity=-0.025 Sum_probs=48.0
Q ss_pred CCcEecceeC-CCCCEEEEEEecEEEEEEEeCCCeE-EEEEEeC-CcEEEECCCCeeEEEecCC
Q 038563 82 VGGVNVPHFH-PRATEIAVVLEGKIYSGFVDTQNRI-FAKVIEK-GEVMVFPRGLVHFQMNVGD 142 (198)
Q Consensus 82 pg~~~~pH~H-p~a~Ei~yVl~G~~~~~~~~~~~~~-~~~~l~~-Gd~~~iP~G~~H~~~N~g~ 142 (198)
|++...+|.| +..-|.+.|++|++.+.+.++++.. ....+.+ ++.-++|++..|.+.-.++
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~ 83 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASD 83 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCC
Confidence 6678889999 6778999999999999998887753 3345555 4566799999999987643
No 84
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=94.30 E-value=0.1 Score=37.73 Aligned_cols=29 Identities=31% Similarity=0.580 Sum_probs=21.8
Q ss_pred eEEEEEEeCCcEEEECCCCeeEEEecCCC
Q 038563 115 RIFAKVIEKGEVMVFPRGLVHFQMNVGDT 143 (198)
Q Consensus 115 ~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~ 143 (198)
+.+..+-++||.+++|+|..|+..|.|..
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCce
Confidence 45578899999999999999999999864
No 85
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.14 E-value=0.35 Score=42.93 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=49.8
Q ss_pred ceEEEEEEEeCCcEe-cceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEE
Q 038563 72 GMSMVRADFDVGGVN-VPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILG 149 (198)
Q Consensus 72 gls~~~~~l~pg~~~-~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~ 149 (198)
|+.+..-.+. -+|. ..-...+.+|++++.+|++++. ++-|. .++++||..+||+|+....+-...+ +..+.
T Consensus 124 g~~i~~y~~n-~sm~~~~f~NADge~Livpq~G~l~l~--te~G~---l~v~pgeiavIPRG~~frve~~~~~-~rgy~ 195 (427)
T COG3508 124 GVAIHVYKVN-ESMTKRFFRNADGELLIVPQQGELRLK--TELGV---LEVEPGEIAVIPRGTTFRVELKDGE-ARGYG 195 (427)
T ss_pred ceEEEEEEcc-ccchhhhhhcCCCCEEEEeecceEEEE--Eeece---EEecCCcEEEeeCCceEEEEecCCc-eEEEE
Confidence 5555433333 3444 5556678899999999999864 33455 6899999999999999988775544 44443
No 86
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=93.62 E-value=0.44 Score=40.97 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=54.6
Q ss_pred ceEEEEEEEeCCc-E--ecceeCCCCCEEEEE---EecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcE
Q 038563 72 GMSMVRADFDVGG-V--NVPHFHPRATEIAVV---LEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWA 145 (198)
Q Consensus 72 gls~~~~~l~pg~-~--~~pH~Hp~a~Ei~yV---l~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~ 145 (198)
.+-|....+.||+ + -|||.|.+..|.+|- -.+...+.+..+-++.....++-+|.++.|+=.+|.-. |...-
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~--gt~~y 251 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGV--GTSNY 251 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCc--Ccccc
Confidence 5777777889999 4 599999877785542 22322233322213433579999999999999999754 44555
Q ss_pred EEEEEEeCCC
Q 038563 146 TILGSFDSQN 155 (198)
Q Consensus 146 ~~~~~~~s~~ 155 (198)
.||+..--+|
T Consensus 252 ~fiw~m~gen 261 (276)
T PRK00924 252 TFIWGMAGEN 261 (276)
T ss_pred EEEEEecccC
Confidence 6666665444
No 87
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=93.58 E-value=2.7 Score=32.48 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=57.4
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEec-EEEEEEEeCCCeEEEEEE----eCCc--EEEECCCCeeEEEecCCCc
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEG-KIYSGFVDTQNRIFAKVI----EKGE--VMVFPRGLVHFQMNVGDTW 144 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G-~~~~~~~~~~~~~~~~~l----~~Gd--~~~iP~G~~H~~~N~g~~~ 144 (198)
-.+....-|.++.....|.= +++|+.+-..| .+++.+++++|+.....| .+|+ .++||+|.....+-.+...
T Consensus 40 ~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~ 118 (139)
T PF06172_consen 40 ASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGD 118 (139)
T ss_dssp S-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSS
T ss_pred cceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCC
Confidence 35666666888888877765 78999999998 689999999987666666 3454 7899999998876544555
Q ss_pred EEEEEEEeCCCCcee
Q 038563 145 ATILGSFDSQNPGLQ 159 (198)
Q Consensus 145 ~~~~~~~~s~~pg~~ 159 (198)
-.++...- .||+.
T Consensus 119 y~Lvsc~V--aPGF~ 131 (139)
T PF06172_consen 119 YSLVSCTV--APGFD 131 (139)
T ss_dssp EEEEEEEE--SSC--
T ss_pred EEEEEEEE--cCCCc
Confidence 44444332 36653
No 88
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=93.40 E-value=0.21 Score=41.30 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=49.6
Q ss_pred EeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCC
Q 038563 80 FDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDT 143 (198)
Q Consensus 80 l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~ 143 (198)
=.|+...-.|..+ ..|++|=.+|...+.+++. ++....++++||++..|+..+|+-+.-.+.
T Consensus 40 GGPN~RkdyHiee-geE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqRFant 101 (279)
T KOG3995|consen 40 GGPNTRKDYHIEE-GEEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQRFANT 101 (279)
T ss_pred cCCCcccccccCC-cchhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhhhccc
Confidence 3455555667774 7999999999999999876 666678999999999999999986654433
No 89
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=93.07 E-value=1.4 Score=36.12 Aligned_cols=76 Identities=14% Similarity=0.056 Sum_probs=52.6
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeE-EEEEEeCCcEEEECCCCeeEEEecCCCcEEEE
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRI-FAKVIEKGEVMVFPRGLVHFQMNVGDTWATIL 148 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~-~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~ 148 (198)
+.......+++|..+-..-. ....+++|++|.+.+...+++|+. ....+.+||++-+..+..+.....-.+++.++
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd-~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~ 111 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGE-PADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVR 111 (230)
T ss_pred cceeeeEEECCCCEEECCCC-CCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEE
Confidence 67777889999987644433 467899999999999988888863 44567899988766554443333334445444
No 90
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=92.52 E-value=0.95 Score=31.85 Aligned_cols=47 Identities=21% Similarity=0.096 Sum_probs=36.9
Q ss_pred EEEEEecEEEEEEEeCCCe--EEEEEEeCCcEEEECCCCeeEEEecCCC
Q 038563 97 IAVVLEGKIYSGFVDTQNR--IFAKVIEKGEVMVFPRGLVHFQMNVGDT 143 (198)
Q Consensus 97 i~yVl~G~~~~~~~~~~~~--~~~~~l~~Gd~~~iP~G~~H~~~N~g~~ 143 (198)
.+-|++|++++...+++|. .....+.+|+..+|++...|.+.-.+++
T Consensus 28 ~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D 76 (82)
T PF09313_consen 28 KLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDD 76 (82)
T ss_dssp EEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT
T ss_pred EEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCC
Confidence 5679999999999887642 2356899999999999999999987664
No 91
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.13 E-value=0.071 Score=48.97 Aligned_cols=62 Identities=21% Similarity=0.400 Sum_probs=42.1
Q ss_pred EEEeC-Cc-EecceeCCCCCEEEEEEecEEEEEEEeCC-------------------Ce-EEEEEEeCCcEEEECCCCee
Q 038563 78 ADFDV-GG-VNVPHFHPRATEIAVVLEGKIYSGFVDTQ-------------------NR-IFAKVIEKGEVMVFPRGLVH 135 (198)
Q Consensus 78 ~~l~p-g~-~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~-------------------~~-~~~~~l~~Gd~~~iP~G~~H 135 (198)
+.|.| |. -.+|||- +-+-++.=++|+=...+-.+. |+ ++...|++||++|||+|.+|
T Consensus 321 vYLTPagSqGfaPHyD-dIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IH 399 (629)
T KOG3706|consen 321 VYLTPAGSQGFAPHYD-DIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIH 399 (629)
T ss_pred eeecCCCCCCCCCchh-hhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCccee
Confidence 34544 44 3799998 445566668888655443221 32 34688999999999999999
Q ss_pred EEEec
Q 038563 136 FQMNV 140 (198)
Q Consensus 136 ~~~N~ 140 (198)
.....
T Consensus 400 QA~t~ 404 (629)
T KOG3706|consen 400 QADTP 404 (629)
T ss_pred ecccc
Confidence 87653
No 92
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=92.09 E-value=6.9 Score=33.37 Aligned_cols=97 Identities=18% Similarity=0.132 Sum_probs=50.7
Q ss_pred eEEEEEcccCCCCccccceEEEEEEEeCCc-E--ecceeCCCC--------CEEEEEE-e---cEEEEEEEeCCC-eEEE
Q 038563 55 LASIPVNVNVFPGLNTLGMSMVRADFDVGG-V--NVPHFHPRA--------TEIAVVL-E---GKIYSGFVDTQN-RIFA 118 (198)
Q Consensus 55 ~~v~~~~~~~~P~l~~~gls~~~~~l~pg~-~--~~pH~Hp~a--------~Ei~yVl-~---G~~~~~~~~~~~-~~~~ 118 (198)
-.|......+.+. .-.|-|..+. .|+| . -|||.|.+. +|++|-- . |-+...+.+.++ ....
T Consensus 135 R~V~~~i~~~~~~--~~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~ 211 (261)
T PF04962_consen 135 RTVRNIIDPNVPP--ASRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEH 211 (261)
T ss_dssp EEEEEEESTTT-----SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEE
T ss_pred EEEEEeeCCCCcc--cceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEE
Confidence 3454444444442 2256676666 5555 4 499999752 5655542 2 433322222222 2236
Q ss_pred EEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEeCCC
Q 038563 119 KVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFDSQN 155 (198)
Q Consensus 119 ~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~s~~ 155 (198)
..++-||++++|+| .|.+....-....++.++-..+
T Consensus 212 ~~V~~~d~V~iP~g-yHp~~aapGy~~Yylw~maG~~ 247 (261)
T PF04962_consen 212 YVVRNGDAVLIPSG-YHPVVAAPGYDMYYLWVMAGEN 247 (261)
T ss_dssp EEEETTEEEEESTT-B-SEEEEEESSEEEEEEEESSS
T ss_pred EEEECCCEEEeCCC-CCCcCcCCCcCcEEEEEEEcCC
Confidence 78999999999999 3444433333455777776555
No 93
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=91.42 E-value=2.9 Score=31.74 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=41.5
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCC
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGD 142 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~ 142 (198)
++.+.++.....-.+...-+.+.-=+.+.++|+..+.. +++ ...+.+||+++++.+.++.+...+.
T Consensus 33 ~~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~---~g~--~~~~~pg~~~l~d~~~~~~~~~~~~ 98 (172)
T PF14525_consen 33 GLRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQ---GGR--EVELAPGDVVLLDPGQPYRLEFSAG 98 (172)
T ss_pred CEEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEE---CCE--EEEEcCCeEEEEcCCCCEEEEECCC
Confidence 35555555553332211111223345567888888765 355 5799999999999999988775533
No 94
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=91.34 E-value=1.2 Score=29.72 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=41.2
Q ss_pred EEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEe
Q 038563 78 ADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMN 139 (198)
Q Consensus 78 ~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N 139 (198)
+.|.||....++-. +...+.|.+|++-++.. |....+.|++||.+.+++|.--++..
T Consensus 2 ~~L~~g~~~~lr~~--~~~~l~v~~G~vWlT~~---g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAA--AGQRLRVESGRVWLTRE---GDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcC--CCcEEEEccccEEEECC---CCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 35677777666644 34449999999887753 43446799999999999997765553
No 95
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=91.23 E-value=1.2 Score=29.86 Aligned_cols=49 Identities=12% Similarity=0.297 Sum_probs=35.6
Q ss_pred EEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeE-EEEEEeCCcEE
Q 038563 78 ADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRI-FAKVIEKGEVM 127 (198)
Q Consensus 78 ~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~-~~~~l~~Gd~~ 127 (198)
.++++|..+-.. +.....+++|++|.+.+...+.+++. ....+.+||++
T Consensus 2 ~~~~~g~~i~~~-g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 2 KTYKKGEVIYRQ-GDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp EEESTTEEEEET-TSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred eEECCCCEEEeC-CCcCCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 356666654222 22368999999999999998887763 35788999876
No 96
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=90.95 E-value=1.1 Score=37.30 Aligned_cols=77 Identities=19% Similarity=0.075 Sum_probs=56.1
Q ss_pred CCccccceEEEEEEEeCCcEecc-eeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCc
Q 038563 66 PGLNTLGMSMVRADFDVGGVNVP-HFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTW 144 (198)
Q Consensus 66 P~l~~~gls~~~~~l~pg~~~~p-H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~ 144 (198)
|.--...+.+..++++||+.+|. -+|- -+-=.|||+|++...+. +. ...+++||.+..-+-.+.+....|...
T Consensus 175 P~d~r~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrLn---~d--wv~V~aGD~mwm~A~cpQacyagG~g~ 248 (264)
T COG3257 175 PKELRFDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRLN---NN--WVPVEAGDYIWMGAYCPQACYAGGRGA 248 (264)
T ss_pred ccccCcceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEeec---Cc--eEEeecccEEEeeccChhhhccCCCCc
Confidence 43334468888899999998754 4552 24457999999988763 33 578999999998888888777777665
Q ss_pred EEEE
Q 038563 145 ATIL 148 (198)
Q Consensus 145 ~~~~ 148 (198)
...+
T Consensus 249 frYL 252 (264)
T COG3257 249 FRYL 252 (264)
T ss_pred eEEE
Confidence 4443
No 97
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=90.88 E-value=2 Score=38.73 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=40.9
Q ss_pred eEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEE
Q 038563 73 MSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQM 138 (198)
Q Consensus 73 ls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~ 138 (198)
..+.++++..+... ......++++|++|++++.. ++. +..|++|+++++|++......
T Consensus 321 F~~~~~~l~~~~~~---~~~~~~~Illv~~G~~~i~~---~~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 321 FAFSLHDLSDQPTT---LSQQSAAILFCVEGEAVLWK---GEQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred cEEEEEEECCceEE---ecCCCcEEEEEEcceEEEEe---CCe--EEEECCCCEEEEeCCCccEEE
Confidence 56666666554222 22256799999999998753 344 468999999999998776655
No 98
>PLN02288 mannose-6-phosphate isomerase
Probab=90.48 E-value=1.1 Score=40.53 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=40.6
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCC
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGL 133 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~ 133 (198)
..++.++++.++.......+ ++.++++|++|++++... +......|++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~~---~~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLSTG---SSEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEecC---CccceEEEeceeEEEEeCCC
Confidence 56777888887764322223 578999999999987532 22113569999999999864
No 99
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=90.26 E-value=4.3 Score=32.27 Aligned_cols=53 Identities=8% Similarity=0.160 Sum_probs=39.2
Q ss_pred EEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCe-EEEEEEeCCcEEEE
Q 038563 76 VRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNR-IFAKVIEKGEVMVF 129 (198)
Q Consensus 76 ~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~-~~~~~l~~Gd~~~i 129 (198)
....+++|..+-..-. ....+++|++|.+++...+.+|+ .....+.+||++-.
T Consensus 21 ~~~~~~kg~~l~~~g~-~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 21 HIHKYPAKSTLIHAGE-KAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred eEEEeCCCCEEEeCCC-CCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 4568888887643333 46789999999999988777765 44567899998744
No 100
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=90.14 E-value=2.9 Score=36.19 Aligned_cols=59 Identities=22% Similarity=0.188 Sum_probs=41.7
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEE
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQM 138 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~ 138 (198)
-.++.++++..... ...+ ....+++|++|++++.. ++. ...|++|+.+++|++.-....
T Consensus 234 ~F~~~~~~~~~~~~--~~~~-~~~~il~v~~G~~~i~~---~~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 234 YFSVYKWDISGKAE--FIQQ-QSALILSVLEGSGRIKS---GGK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CeEEEEEEeCCcee--eccC-CCcEEEEEEcceEEEEE---CCE--EEEEecccEEEEccCCccEEE
Confidence 46777777764321 1223 47889999999998753 244 468999999999999866554
No 101
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.78 E-value=3.4 Score=36.97 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=54.2
Q ss_pred CCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCc
Q 038563 65 FPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTW 144 (198)
Q Consensus 65 ~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~ 144 (198)
.|... ...+.+++++.|.....-.- +..-|+.|++|++++...+ +. ...+++||+++||+...-.+.. .+++
T Consensus 327 ~Ppi~--eF~v~~~~v~~g~~~~~~~~-~~~SIllv~~G~g~l~~~t--~~--~~~v~rG~V~fI~a~~~i~~~~-~sd~ 398 (411)
T KOG2757|consen 327 DPPIE--EFAVLETKVPTGESYKFPGV-DGPSILLVLKGSGILKTDT--DS--KILVNRGDVLFIPANHPIHLSS-SSDP 398 (411)
T ss_pred CCCCc--ceeEEEeecCCCceEEeecC-CCceEEEEEecceEEecCC--CC--ceeeccCcEEEEcCCCCceeec-cCcc
Confidence 35555 57888889998775333333 4678999999999877532 33 4689999999999997654433 3444
Q ss_pred EEEEEEEe
Q 038563 145 ATILGSFD 152 (198)
Q Consensus 145 ~~~~~~~~ 152 (198)
...+-++.
T Consensus 399 ~~~yrAf~ 406 (411)
T KOG2757|consen 399 FLGYRAFS 406 (411)
T ss_pred eeeeeccc
Confidence 55444443
No 102
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=88.66 E-value=2.5 Score=33.49 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=37.5
Q ss_pred EEEEeCCcEecceeCC-CCCEEEEEEecEEEEEEEeCCCeE-EEEEEeCCcEEEEC
Q 038563 77 RADFDVGGVNVPHFHP-RATEIAVVLEGKIYSGFVDTQNRI-FAKVIEKGEVMVFP 130 (198)
Q Consensus 77 ~~~l~pg~~~~pH~Hp-~a~Ei~yVl~G~~~~~~~~~~~~~-~~~~l~~Gd~~~iP 130 (198)
...+++|..+-.---+ ....+++|++|.+++...+++|+. ....+.+||++-.+
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 3467777765222121 247799999999999998888864 44566999987543
No 103
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=86.85 E-value=1.1 Score=40.04 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=40.8
Q ss_pred EEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCC----------------C-eEEEEEEeCCcEEEECCCCeeEEEec
Q 038563 79 DFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQ----------------N-RIFAKVIEKGEVMVFPRGLVHFQMNV 140 (198)
Q Consensus 79 ~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~----------------~-~~~~~~l~~Gd~~~iP~G~~H~~~N~ 140 (198)
...+||...+|+-+ ..-+++=..|+=+..+.... . -....+|.+||++|||+|+.|+-...
T Consensus 125 ~a~~GGgvg~H~D~-YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 125 FAAPGGGVGPHFDQ-YDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred EecCCCccCccccc-hheeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 56789999999985 35444444454444442210 0 01146899999999999999998775
No 104
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=86.70 E-value=6 Score=31.39 Aligned_cols=79 Identities=18% Similarity=0.155 Sum_probs=55.0
Q ss_pred ceEEEEEEEe--CCcEecceeCCCCCEEEEEEecEEEEEEEeCCC-----eEEEEEEeCCcEEEECCCCeeEEEecCCCc
Q 038563 72 GMSMVRADFD--VGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQN-----RIFAKVIEKGEVMVFPRGLVHFQMNVGDTW 144 (198)
Q Consensus 72 gls~~~~~l~--pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~-----~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~ 144 (198)
++++.|..-. |=.+..+-.||..+|.++-+.|+-.+-++.+++ +...+.++.|+.+.+-+|.+|...-.=+.+
T Consensus 55 ~isifr~~~~~~p~~~~~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~ 134 (162)
T PRK03606 55 LISIFRAQPRALPLEIRMLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEV 134 (162)
T ss_pred EEEEEeCcccCCCcceeeEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCC
Confidence 5666655422 223445567888999999999998887776542 456789999999999999999754332344
Q ss_pred EEEEEE
Q 038563 145 ATILGS 150 (198)
Q Consensus 145 ~~~~~~ 150 (198)
..++++
T Consensus 135 ~dF~vv 140 (162)
T PRK03606 135 SDFLVV 140 (162)
T ss_pred ceEEEE
Confidence 555443
No 105
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=86.23 E-value=6.8 Score=33.77 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=37.9
Q ss_pred CCCEE-EEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEe--cCCCcEEEEEE
Q 038563 93 RATEI-AVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMN--VGDTWATILGS 150 (198)
Q Consensus 93 ~a~Ei-~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N--~g~~~~~~~~~ 150 (198)
...|+ ++.+.|++.+.+ +|+ .+.|.+.|++++|+|..-.... ....++.++..
T Consensus 72 ~rrE~giV~lgG~~~V~v---dG~--~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~ 127 (276)
T PRK00924 72 ERRELGIINIGGAGTVTV---DGE--TYELGHRDALYVGKGAKEVVFASADAANPAKFYLN 127 (276)
T ss_pred CCcEEEEEEccceEEEEE---CCE--EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence 45665 566889999886 466 4569999999999998766654 23456776644
No 106
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=86.17 E-value=11 Score=29.88 Aligned_cols=82 Identities=23% Similarity=0.224 Sum_probs=47.7
Q ss_pred ceEEEEEEEeCCc--EecceeCCCCCEEEEEEecEE-EEEEEeCC------CeEEEEEEeCCcEEEECCCCeeEEEecCC
Q 038563 72 GMSMVRADFDVGG--VNVPHFHPRATEIAVVLEGKI-YSGFVDTQ------NRIFAKVIEKGEVMVFPRGLVHFQMNVGD 142 (198)
Q Consensus 72 gls~~~~~l~pg~--~~~pH~Hp~a~Ei~yVl~G~~-~~~~~~~~------~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~ 142 (198)
++++.+..-.+.- +..+=.||..+|.++-+.|+. .+-++-++ .++..+.+..|+.+.+-+|.+|...-.=+
T Consensus 56 ~~si~~~~~~~~p~~v~~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~ 135 (165)
T PF04115_consen 56 GISIFRAQPRELPFEVSMLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLD 135 (165)
T ss_dssp EEEEEEEEBE-SSEEEEEEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESS
T ss_pred EEEEEEeeccCCccccceeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccC
Confidence 5677666443332 345556777999999999988 55455333 24567899999999999999998654334
Q ss_pred CcEEEEEEEeC
Q 038563 143 TWATILGSFDS 153 (198)
Q Consensus 143 ~~~~~~~~~~s 153 (198)
+++.++++-..
T Consensus 136 ~~~~f~vv~~~ 146 (165)
T PF04115_consen 136 EPADFLVVDRI 146 (165)
T ss_dssp SEEEEEEEEEE
T ss_pred CcceEEEEeCC
Confidence 66777666433
No 107
>PLN02868 acyl-CoA thioesterase family protein
Probab=85.26 E-value=4 Score=36.73 Aligned_cols=53 Identities=8% Similarity=0.051 Sum_probs=40.5
Q ss_pred EEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEE
Q 038563 76 VRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVF 129 (198)
Q Consensus 76 ~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~i 129 (198)
....+++|.++-.--. ....+++|++|++++...+.+|+.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd-~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGE-PGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCC-cCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 3457888887643333 4678999999999998887777666678899998874
No 108
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.41 E-value=3.9 Score=29.03 Aligned_cols=44 Identities=20% Similarity=0.081 Sum_probs=34.7
Q ss_pred CCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEE
Q 038563 92 PRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQM 138 (198)
Q Consensus 92 p~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~ 138 (198)
..+.|+..|++|.+.+-+. |...+++..+|+.|.+|.+.-..++
T Consensus 39 Ta~~E~Mtvv~Gal~v~lp---gs~dWq~~~~Ge~F~VpgnS~F~lq 82 (94)
T COG3123 39 TAAPEEMTVVSGALTVLLP---GSDDWQVYTAGEVFNVPGNSEFDLQ 82 (94)
T ss_pred cCCceEEEEEeeEEEEEcC---CCcccEEecCCceEEcCCCCeEEEE
Confidence 3578999999999998875 3334789999999999998654443
No 109
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=83.63 E-value=9.7 Score=26.04 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=38.0
Q ss_pred EEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCe-EEEEEEeCCcEEEEC
Q 038563 76 VRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNR-IFAKVIEKGEVMVFP 130 (198)
Q Consensus 76 ~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~-~~~~~l~~Gd~~~iP 130 (198)
....+.+|..+ .+.......+++|++|.+.+...+.+|+ .....+.+||++-..
T Consensus 18 ~~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 18 EPVRYPAGEVI-IRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred eEEEeCCCCEE-EeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 34567888865 3334456889999999999887765553 456778899977443
No 110
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=80.56 E-value=6.9 Score=31.87 Aligned_cols=52 Identities=6% Similarity=-0.090 Sum_probs=37.9
Q ss_pred EEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCe-EEEEEEeCCcEEEEC
Q 038563 78 ADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNR-IFAKVIEKGEVMVFP 130 (198)
Q Consensus 78 ~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~-~~~~~l~~Gd~~~iP 130 (198)
..+++|..+-.. ......+++|++|.+++...+.+|+ .....+.+||++-..
T Consensus 34 ~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 34 FHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred eeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEee
Confidence 467777765322 2245789999999999999888886 345678899987643
No 111
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=80.35 E-value=9.5 Score=26.00 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=36.7
Q ss_pred EEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCe-EEEEEEeCCcEEEE
Q 038563 76 VRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNR-IFAKVIEKGEVMVF 129 (198)
Q Consensus 76 ~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~-~~~~~l~~Gd~~~i 129 (198)
....+.+|..+-.. ......+++|++|.+.+...+++|+ .....+.+|+++-.
T Consensus 18 ~~~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 44567888865222 2235779999999999988777663 45567888887633
No 112
>PHA02984 hypothetical protein; Provisional
Probab=79.13 E-value=19 Score=30.99 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=42.7
Q ss_pred CCEEE--EEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEE-EEeCCCC
Q 038563 94 ATEIA--VVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILG-SFDSQNP 156 (198)
Q Consensus 94 a~Ei~--yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~-~~~s~~p 156 (198)
..|.+ .+++|+..+..... ++..+..+++||.|.+.-+.-|.... .+..+.+++ .+.+..|
T Consensus 91 snEy~FvlCl~G~~~I~~~~~-~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L~Vi~y~v~~p 154 (286)
T PHA02984 91 SNEYMFVLCLNGKTSIECFNK-GSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHLAVITYTSNCP 154 (286)
T ss_pred eccEEEEEEcCCeEEEEEecC-CceeeeEEecCceEEEEccceEEEEe-CCCceEEEEEEEEecce
Confidence 34544 56789999887543 55678999999999999999999875 344554444 3444333
No 113
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=77.40 E-value=16 Score=31.16 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=44.1
Q ss_pred eEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCC--------cEEEECCCCeeEEEecCCCc
Q 038563 73 MSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKG--------EVMVFPRGLVHFQMNVGDTW 144 (198)
Q Consensus 73 ls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~G--------d~~~iP~G~~H~~~N~g~~~ 144 (198)
+.+..++|++|.....-.- +.+-.++.|+|++++.+ +|+. ...|..- |++++|+|.--.+.+..+
T Consensus 27 ~~~~~l~L~~g~~~~~~~~-~~E~~vv~l~G~~~v~~---~g~~-~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~-- 99 (261)
T PF04962_consen 27 MGFGVLRLEAGESLEFELE-RRELGVVNLGGKATVTV---DGEE-FYELGGRESVFDGPPDALYVPRGTKVVIFASTD-- 99 (261)
T ss_dssp BECCCEEEECCHCCCCCCC-SEEEEEEEESSSEEEEE---TTEE-EEEE-TTSSGGGS--EEEEE-TT--EEEEESST--
T ss_pred cceEEEEecCCCEEeccCC-CcEEEEEEeCCEEEEEe---CCce-EEEecccccccCCCCcEEEeCCCCeEEEEEcCC--
Confidence 4455678999887655433 33445567899999987 3522 4567776 999999999987777444
Q ss_pred EEEE
Q 038563 145 ATIL 148 (198)
Q Consensus 145 ~~~~ 148 (198)
+.++
T Consensus 100 ae~~ 103 (261)
T PF04962_consen 100 AEFA 103 (261)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 5554
No 114
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=77.03 E-value=18 Score=29.41 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=37.4
Q ss_pred EEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEE
Q 038563 77 RADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVF 129 (198)
Q Consensus 77 ~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~i 129 (198)
...+++|..+- +-......+++|++|.+++.....+++..-..+.+||++-.
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~ 83 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFIL 83 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhh
Confidence 45788887653 33445688999999999998765545555678889997643
No 115
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=77.00 E-value=12 Score=28.97 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=39.3
Q ss_pred cceeCCCCCEEEEEEecEEEEEEEeCC------------------CeEEEEEEeCCcEEEECCCCeeEEE
Q 038563 87 VPHFHPRATEIAVVLEGKIYSGFVDTQ------------------NRIFAKVIEKGEVMVFPRGLVHFQM 138 (198)
Q Consensus 87 ~pH~Hp~a~Ei~yVl~G~~~~~~~~~~------------------~~~~~~~l~~Gd~~~iP~G~~H~~~ 138 (198)
.+=.|.+-..+.|+++|+-.+++.... +......|++|++++|-++.+|...
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 445677789999999999888875421 1111578999999999999999865
No 116
>PHA02890 hypothetical protein; Provisional
Probab=76.09 E-value=27 Score=29.89 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=41.9
Q ss_pred CEEE--EEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEE-EEEEeCCCC
Q 038563 95 TEIA--VVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATI-LGSFDSQNP 156 (198)
Q Consensus 95 ~Ei~--yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~-~~~~~s~~p 156 (198)
.|.+ .+++|+..+.... +++..+..+++||.|.+.-+.-|.... ..+.+ +..+.+..|
T Consensus 91 nEy~FVlCL~Gs~~In~~~-~d~~iS~~I~kGeaF~mdv~t~H~i~T---Knl~L~Viky~vd~p 151 (278)
T PHA02890 91 IECFFVACIEGSCKINVNI-GDREISDHIHENQGFIMDVGLDHAIDS---DNVGLFITKFEVDAH 151 (278)
T ss_pred ccEEEEEEeCCeEEEEEec-CCceeeeeeecCceEEEEccceEEEEc---cceeEEEEEEEecce
Confidence 4544 5678999988753 356678999999999999999999886 44443 344455444
No 117
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=75.75 E-value=11 Score=32.51 Aligned_cols=47 Identities=6% Similarity=-0.044 Sum_probs=37.6
Q ss_pred CEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcE
Q 038563 95 TEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWA 145 (198)
Q Consensus 95 ~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~ 145 (198)
.-++++.+|...+.. ++|+ ...+.++.++++|++..|.+.|...+..
T Consensus 39 ~~li~v~~G~~~i~~--~~g~--~l~i~~p~~~~~p~~~~~~~~~~~~~~~ 85 (291)
T PRK15186 39 SVLIKLTTGKISITT--SSGE--YITASGPMLIFLAKDQTIHITMEETHEQ 85 (291)
T ss_pred eEEEEeccceEEEEe--CCCc--eEEeCCCeEEEEeCCcEEEEEecccCCC
Confidence 458899999998764 3454 4689999999999999999999775543
No 118
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=75.73 E-value=24 Score=30.98 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=40.7
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEE
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQ 137 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~ 137 (198)
..++.++++.. ....-.+ ++..+++|++|++++.. +++ ...|++|+.+++|+...-+.
T Consensus 241 ~F~l~~~~i~~--~~~~~~~-~~~~il~v~eG~~~l~~---~~~--~~~l~~G~s~~ipa~~~~~~ 298 (312)
T COG1482 241 DFALYKWDISG--TAEFIKQ-ESFSILLVLEGEGTLIG---GGQ--TLKLKKGESFFIPANDGPYT 298 (312)
T ss_pred ceEEEEEeccC--hhhhccC-CCcEEEEEEcCeEEEec---CCE--EEEEcCCcEEEEEcCCCcEE
Confidence 46676666664 1111112 47899999999998764 255 57999999999999855443
No 119
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=74.78 E-value=14 Score=28.24 Aligned_cols=65 Identities=17% Similarity=0.331 Sum_probs=47.7
Q ss_pred CCccccceEEEEEEEeCCcEecceeCCCCCEEEEEE----ecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEe
Q 038563 66 PGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVL----EGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMN 139 (198)
Q Consensus 66 P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl----~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N 139 (198)
|+++ ++.+.++.|++|....-. +..|+..++ +|++.+++-++.|. .+++||++-+-.|..-.+++
T Consensus 12 P~~k--N~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~~~----~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 12 PGLK--NINVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEEGC----LIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred hhhh--cceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCcCc----ccCCccEEEecccchhhhcC
Confidence 6777 567777888888765332 456766664 47788888876566 67999999999998777665
No 120
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=74.75 E-value=21 Score=24.86 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=37.2
Q ss_pred EEEeCCcEecceeCC---CCCEEEEE--Ee-c-----EEEEEEEeC---CCeEEEEE-----EeCCcEEEECC-CCeeEE
Q 038563 78 ADFDVGGVNVPHFHP---RATEIAVV--LE-G-----KIYSGFVDT---QNRIFAKV-----IEKGEVMVFPR-GLVHFQ 137 (198)
Q Consensus 78 ~~l~pg~~~~pH~Hp---~a~Ei~yV--l~-G-----~~~~~~~~~---~~~~~~~~-----l~~Gd~~~iP~-G~~H~~ 137 (198)
....+|+...||+.. ....+-++ |. - .+...+.+. ++...... .++|++++|+. ...|..
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v 83 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGV 83 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecC
Confidence 456899999999985 22332222 33 1 133334432 12222223 88999999999 999998
Q ss_pred Eec
Q 038563 138 MNV 140 (198)
Q Consensus 138 ~N~ 140 (198)
.-.
T Consensus 84 ~~v 86 (100)
T PF13640_consen 84 TPV 86 (100)
T ss_dssp EEE
T ss_pred ccc
Confidence 776
No 121
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=73.51 E-value=28 Score=27.85 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=53.9
Q ss_pred ceEEEEEEEe--CCcEecceeCCCCCEEEEEEec-EEEEEEEeCC-----CeEEEEEEeCCcEEEECCCCeeEEEecCCC
Q 038563 72 GMSMVRADFD--VGGVNVPHFHPRATEIAVVLEG-KIYSGFVDTQ-----NRIFAKVIEKGEVMVFPRGLVHFQMNVGDT 143 (198)
Q Consensus 72 gls~~~~~l~--pg~~~~pH~Hp~a~Ei~yVl~G-~~~~~~~~~~-----~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~ 143 (198)
++++.|..-. |=.+..+-.||..++.+.-+.| ...+-++.++ +....+....|+.+.+-+|.+|...-.=+.
T Consensus 55 ~isifr~~p~~~p~~i~~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~ 134 (171)
T PRK13395 55 LVSLFRAQPRALPVAITMMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDA 134 (171)
T ss_pred EEEEEeccccCCCcceeeEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCC
Confidence 4555554322 2233455567888999999999 7666666543 245678999999999999999986544344
Q ss_pred cEEEEEEE
Q 038563 144 WATILGSF 151 (198)
Q Consensus 144 ~~~~~~~~ 151 (198)
+..|+++-
T Consensus 135 ~~dF~vvd 142 (171)
T PRK13395 135 VSDFVVVD 142 (171)
T ss_pred CccEEEEe
Confidence 55666554
No 122
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=72.98 E-value=1.9 Score=37.26 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=17.8
Q ss_pred EEEEeCCcEEEECCCCeeE
Q 038563 118 AKVIEKGEVMVFPRGLVHF 136 (198)
Q Consensus 118 ~~~l~~Gd~~~iP~G~~H~ 136 (198)
...+++||++++|+|.+|.
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred ccccCCCCEEEeCCCCccc
Confidence 5789999999999999998
No 123
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=72.55 E-value=38 Score=27.37 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=36.1
Q ss_pred EEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeE-EEEEEeCCcEEEE
Q 038563 78 ADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRI-FAKVIEKGEVMVF 129 (198)
Q Consensus 78 ~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~-~~~~l~~Gd~~~i 129 (198)
..+++|..+-.- -.....+++|++|.+++...+++|+. ....+.+||++-.
T Consensus 40 ~~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 40 KPIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred eeecCCCEeECC-CCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 357777765322 22357789999999999988888754 3445689998854
No 124
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=71.54 E-value=10 Score=29.48 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=28.6
Q ss_pred CCEEEEEEecEEEEEEEeCCCeE-EEEEEeCCcEEEE
Q 038563 94 ATEIAVVLEGKIYSGFVDTQNRI-FAKVIEKGEVMVF 129 (198)
Q Consensus 94 a~Ei~yVl~G~~~~~~~~~~~~~-~~~~l~~Gd~~~i 129 (198)
...+++|++|.+++...+++|+. .-..+.+||++-.
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGV 47 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeee
Confidence 45689999999999988888764 3567899997743
No 125
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=71.40 E-value=19 Score=27.92 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=40.0
Q ss_pred EEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCe-EEEEEEeCCcEEEECC
Q 038563 74 SMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNR-IFAKVIEKGEVMVFPR 131 (198)
Q Consensus 74 s~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~-~~~~~l~~Gd~~~iP~ 131 (198)
......+++|..+-..--+ +.-+++|++|.+.+...+++|+ .....+.+||++-...
T Consensus 22 ~~~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 22 KLEVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELA 79 (214)
T ss_pred hceeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHH
Confidence 3444567777655444443 4558899999999999988875 3445688999886553
No 126
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=71.26 E-value=19 Score=29.99 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=39.6
Q ss_pred CcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEec
Q 038563 83 GGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNV 140 (198)
Q Consensus 83 g~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~ 140 (198)
.|....|| ++-..+||+|+..... +|+....+.++||....|+|.....+=.
T Consensus 111 eGhsGrh~---ad~y~tIL~G~~~~~~---~g~~~~evy~pGd~~~l~rg~a~~y~m~ 162 (216)
T PF04622_consen 111 EGHSGRHW---ADDYFTILSGEQWAWS---PGSLEPEVYKPGDSHHLPRGEAKQYQMP 162 (216)
T ss_pred CCCCcceE---eeeEEEEEEEEEEEEc---CCCCCceEeccCCEEEecCceEEEEEeC
Confidence 45566675 5778999999988754 3544567899999999999998876643
No 127
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=69.22 E-value=17 Score=28.64 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=43.1
Q ss_pred EecceeCCCCCEEEEEEecEEEEEEEeCCC--------------------eEEEEEEeCCcEEEECCCCeeEEEecCC
Q 038563 85 VNVPHFHPRATEIAVVLEGKIYSGFVDTQN--------------------RIFAKVIEKGEVMVFPRGLVHFQMNVGD 142 (198)
Q Consensus 85 ~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~--------------------~~~~~~l~~Gd~~~iP~G~~H~~~N~g~ 142 (198)
...+-.|.+--++-++++|+=.+++....+ .....+|.+|++++|=+|.+|.......
T Consensus 60 ~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 60 EKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred hcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccccC
Confidence 445566777899999999998887754321 1225789999999999999998754443
No 128
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=68.64 E-value=47 Score=29.59 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=63.6
Q ss_pred CCCeEEEEEcccCCCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCe-EEEEEEeCCcEE--E
Q 038563 52 ETGLASIPVNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNR-IFAKVIEKGEVM--V 128 (198)
Q Consensus 52 ~~g~~v~~~~~~~~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~-~~~~~l~~Gd~~--~ 128 (198)
..|..+..++... ++.-..+.|++++..-+..-+-.-+...+-.+++..-++.++.++|+ .-...|++||-+ +
T Consensus 250 ~sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL~~ 325 (344)
T PRK02290 250 RSGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVLGY 325 (344)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEE
Confidence 5677887777443 22357889999999988776666578889999999999999999987 345799999944 5
Q ss_pred ECCCCeeEEEe
Q 038563 129 FPRGLVHFQMN 139 (198)
Q Consensus 129 iP~G~~H~~~N 139 (198)
++.+--|+-..
T Consensus 326 ~~~~~RHfG~~ 336 (344)
T PRK02290 326 LEEAARHFGMA 336 (344)
T ss_pred ecCCcccccce
Confidence 56666666543
No 129
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=68.51 E-value=4.5 Score=35.50 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.6
Q ss_pred EEEEeCCcEEEECCCCeeEEEe
Q 038563 118 AKVIEKGEVMVFPRGLVHFQMN 139 (198)
Q Consensus 118 ~~~l~~Gd~~~iP~G~~H~~~N 139 (198)
...|++||.+++|+|.+|....
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~~ 180 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYLK 180 (312)
T ss_pred EEecCCCCEEEecCCCceeecc
Confidence 5789999999999999998753
No 130
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=68.35 E-value=84 Score=27.68 Aligned_cols=63 Identities=17% Similarity=0.318 Sum_probs=47.4
Q ss_pred ecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEeC
Q 038563 86 NVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFDS 153 (198)
Q Consensus 86 ~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~s 153 (198)
...-+..++.-++.-.+|.+.++ ++-|| ..+.++++.+||+|+-..+.-.|...-.++.++..
T Consensus 147 ~safyNsDGDFLiVPQ~G~L~I~--TEfGr---llV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~ 209 (446)
T KOG1417|consen 147 NSAFYNSDGDFLIVPQQGRLWIT--TEFGR---LLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGA 209 (446)
T ss_pred cceeecCCCCEEEecccCcEEEE--eeccc---eeecccceEEeecccEEEEecCCCCcceEEEEecc
Confidence 34445556666666677877654 45577 47899999999999999888788888888888864
No 131
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=67.90 E-value=36 Score=26.18 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=32.8
Q ss_pred ecceeCCCCCEEEEEEecEEEEEE-EeCC-------------------Ce-EEEEEEeCCcEEEECCCCeeEEE
Q 038563 86 NVPHFHPRATEIAVVLEGKIYSGF-VDTQ-------------------NR-IFAKVIEKGEVMVFPRGLVHFQM 138 (198)
Q Consensus 86 ~~pH~Hp~a~Ei~yVl~G~~~~~~-~~~~-------------------~~-~~~~~l~~Gd~~~iP~G~~H~~~ 138 (198)
..+=.|.+-..+.|+++|+-++++ .+.. ++ .....|++|++++|-++.+|.-.
T Consensus 61 ~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 61 RRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp S-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred cceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 455678788999999999999888 3221 11 11457999999999999999854
No 132
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=67.18 E-value=15 Score=28.09 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=20.7
Q ss_pred EecceeCCCCCEEEEEEecEEEEEEE
Q 038563 85 VNVPHFHPRATEIAVVLEGKIYSGFV 110 (198)
Q Consensus 85 ~~~pH~Hp~a~Ei~yVl~G~~~~~~~ 110 (198)
-..+=.|.+-..+.|+++|+-++++.
T Consensus 60 ~~~~E~Hr~YiDIq~~l~G~E~i~~~ 85 (142)
T TIGR00022 60 SKKAELHHRYLDIQLLLRGEENIEVG 85 (142)
T ss_pred hcchhhhhheEEEEEeecceEEEEEe
Confidence 34455677789999999999998885
No 133
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=65.02 E-value=6.9 Score=35.31 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.0
Q ss_pred EEEEEeCCcEEEECCCCeeEEEe
Q 038563 117 FAKVIEKGEVMVFPRGLVHFQMN 139 (198)
Q Consensus 117 ~~~~l~~Gd~~~iP~G~~H~~~N 139 (198)
....|++||.+++|+|.+|....
T Consensus 237 N~v~l~pGeaifipAg~~HAyl~ 259 (389)
T PRK15131 237 NVVKLNPGEAMFLFAETPHAYLQ 259 (389)
T ss_pred eEEEeCCCCEEEeCCCCCeEEcC
Confidence 35789999999999999998753
No 134
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=63.08 E-value=29 Score=29.43 Aligned_cols=85 Identities=18% Similarity=0.197 Sum_probs=54.9
Q ss_pred cccceEEEEEEEeCCcE---ecceeCCCCCEEEEEE---ecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCC
Q 038563 69 NTLGMSMVRADFDVGGV---NVPHFHPRATEIAVVL---EGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGD 142 (198)
Q Consensus 69 ~~~gls~~~~~l~pg~~---~~pH~Hp~a~Ei~yVl---~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~ 142 (198)
++-.+++....|+||.+ .|+|.|.|..|..+-. +-+-.+.+..+-.+....+++--+.++-|+=.+|+-. |.
T Consensus 173 ~scQL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP~ETRHiv~~NEqAViSP~WSIHSG~--GT 250 (278)
T COG3717 173 ESCQLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQPQETRHIVMHNEQAVISPPWSIHSGV--GT 250 (278)
T ss_pred hhhhhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCCCceeEEEEeccceeeCCCceeecCc--cc
Confidence 33367888888999995 6999999999976532 1222233332223444667777788888888888743 44
Q ss_pred CcEEEEEEEeCCC
Q 038563 143 TWATILGSFDSQN 155 (198)
Q Consensus 143 ~~~~~~~~~~s~~ 155 (198)
..-.||+..--+|
T Consensus 251 ~~YtFIWaMaGeN 263 (278)
T COG3717 251 ANYTFIWAMAGEN 263 (278)
T ss_pred cceEEEEEecccc
Confidence 4556666654444
No 135
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=62.10 E-value=12 Score=33.05 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=30.9
Q ss_pred eEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEEeCCCCcee
Q 038563 115 RIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSFDSQNPGLQ 159 (198)
Q Consensus 115 ~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~~s~~pg~~ 159 (198)
+...-..++|+++++|.|..|-+.|....-|+---..+.+|.+++
T Consensus 261 kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~V 305 (407)
T KOG2130|consen 261 KPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFV 305 (407)
T ss_pred CCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCcee
Confidence 344567899999999999999999976554333222344554444
No 136
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=62.00 E-value=7.5 Score=34.91 Aligned_cols=63 Identities=25% Similarity=0.350 Sum_probs=44.7
Q ss_pred EEe-CCcEecce---eCCCCCEEEEEEecEEEEEEEeCCC-------------------------eEEEEEEeCCcEEEE
Q 038563 79 DFD-VGGVNVPH---FHPRATEIAVVLEGKIYSGFVDTQN-------------------------RIFAKVIEKGEVMVF 129 (198)
Q Consensus 79 ~l~-pg~~~~pH---~Hp~a~Ei~yVl~G~~~~~~~~~~~-------------------------~~~~~~l~~Gd~~~i 129 (198)
.+. .|...+.| +| +.-+...+.|+=+.-+..+.. +.....=++|+++++
T Consensus 203 y~Gp~gSwtp~HaDVf~--s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFv 280 (427)
T KOG2131|consen 203 YAGPAGSWTPFHADVFH--SPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFV 280 (427)
T ss_pred EeccCCCCCccchhhhc--CCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeec
Confidence 344 35568888 77 466777888887766655421 112234479999999
Q ss_pred CCCCeeEEEecCCC
Q 038563 130 PRGLVHFQMNVGDT 143 (198)
Q Consensus 130 P~G~~H~~~N~g~~ 143 (198)
|.|..|.+.|.+++
T Consensus 281 PsGW~hQV~NL~dT 294 (427)
T KOG2131|consen 281 PSGWHHQVLNLGDT 294 (427)
T ss_pred cCccccccccccce
Confidence 99999999999886
No 137
>COG3542 Uncharacterized conserved protein [Function unknown]
Probab=59.58 E-value=85 Score=24.73 Aligned_cols=104 Identities=19% Similarity=0.263 Sum_probs=58.4
Q ss_pred EEEEEeCCcEecceeCCC-CCEEEEEEecE-EEEEEEeCCCeEEE----EEEeCCcE--EEECCCC-eeEEEecCCCcEE
Q 038563 76 VRADFDVGGVNVPHFHPR-ATEIAVVLEGK-IYSGFVDTQNRIFA----KVIEKGEV--MVFPRGL-VHFQMNVGDTWAT 146 (198)
Q Consensus 76 ~~~~l~pg~~~~pH~Hp~-a~Ei~yVl~G~-~~~~~~~~~~~~~~----~~l~~Gd~--~~iP~G~-~H~~~N~g~~~~~ 146 (198)
...-|+++. .-|||.. +.|+.+...|. +.+.+.. +|+... ..|++|+. +++|+|. .-+....|.+-+.
T Consensus 47 IYyLLe~~~--~s~~HRv~a~eiwHf~ag~pl~~~l~~-dG~~~s~~LG~d~~~Ge~~Q~vVP~g~w~aS~~~~g~~~tL 123 (162)
T COG3542 47 IYYLLEEDN--ISAWHRVTADEIWHFYAGAPLELHLSE-DGGAESFTLGPDLEKGERPQYVVPAGTWWASAVSLGEDYTL 123 (162)
T ss_pred EEEEecCCc--cchheecchhheEEEecCCceEEEEEe-CCCeEEEEecccccCCceeEEEEeCCcEEEEEEecCCCceE
Confidence 334567777 4567743 89999988875 6666665 676544 34567774 6899994 4444445543332
Q ss_pred EEEEEeCCCCceeeechhhhccCCCHHHHHHHhCCCHHHHHHH
Q 038563 147 ILGSFDSQNPGLQKIPSAVFGSNIKEELLEKAFGLTPKEIAKL 189 (198)
Q Consensus 147 ~~~~~~s~~pg~~~~~~~~f~~~~p~~vla~af~v~~~~v~~l 189 (198)
+=+. -.||+-.-...++. |.++|.- .--+.+.++++
T Consensus 124 VgCt---VaPGFdF~~Fela~---~~dlL~~-~p~~~~~ie~l 159 (162)
T COG3542 124 VGCT---VAPGFDFEDFELAE---PEDLLKW-YPGPAEAIERL 159 (162)
T ss_pred EEEE---ecCCccchhccccC---chhhhhc-CCCcHHHHHHH
Confidence 2222 24776553333332 5555542 33344445444
No 138
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=58.96 E-value=77 Score=26.93 Aligned_cols=86 Identities=12% Similarity=0.028 Sum_probs=55.8
Q ss_pred CeEEEEEcccCCCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCC----C-eEEEEEEeCCcEEE
Q 038563 54 GLASIPVNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQ----N-RIFAKVIEKGEVMV 128 (198)
Q Consensus 54 g~~v~~~~~~~~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~----~-~~~~~~l~~Gd~~~ 128 (198)
-+.+..++ .+-++... +.+..++|.+|.....-.- ..+-++.+++|++.+..-+.. | |.-.++=++=|+++
T Consensus 13 ~g~v~~vt-p~sagw~Y--VGF~~~~L~~Ges~~~~~~-~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vY 88 (270)
T COG3718 13 VGLVQDVT-PESAGWEY--VGFRLLRLAAGESATEETG-DRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVY 88 (270)
T ss_pred CcceEEec-CCCCCcee--EEEEEEEccCCCcccccCC-CceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEE
Confidence 34555555 23355554 4445568999998766655 335566778999998754332 2 32234446779999
Q ss_pred ECCCCeeEEEecCCC
Q 038563 129 FPRGLVHFQMNVGDT 143 (198)
Q Consensus 129 iP~G~~H~~~N~g~~ 143 (198)
+|.|....+...++-
T Consensus 89 vp~g~~~~vtA~t~~ 103 (270)
T COG3718 89 VPAGSAFSVTATTDL 103 (270)
T ss_pred ecCCceEEEEeecce
Confidence 999999888876554
No 139
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.87 E-value=5.7 Score=33.02 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=33.4
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEE
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFV 110 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~ 110 (198)
+.||..+-++|++++|+|-||.-.-+.-++=|+..+.-.
T Consensus 74 ~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksy 112 (236)
T KOG4281|consen 74 RFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSY 112 (236)
T ss_pred ceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeec
Confidence 678888999999999999999877777788899887544
No 140
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=55.22 E-value=1.1e+02 Score=27.41 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=63.2
Q ss_pred CCCeEEEEEcccCCCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCe-EEEEEEeCCcEE--E
Q 038563 52 ETGLASIPVNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNR-IFAKVIEKGEVM--V 128 (198)
Q Consensus 52 ~~g~~v~~~~~~~~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~-~~~~~l~~Gd~~--~ 128 (198)
..|..+..++... ++.-..+.|++++..-+..-.-..+..++-.+++..-++.++.++|+ .-...|++||-+ +
T Consensus 260 ~sG~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL~~ 335 (354)
T PF01959_consen 260 RSGDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVLVY 335 (354)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEE
Confidence 5677777776433 22357889999999887666655578899999999999999999887 345799999954 5
Q ss_pred ECCCCeeEEEec
Q 038563 129 FPRGLVHFQMNV 140 (198)
Q Consensus 129 iP~G~~H~~~N~ 140 (198)
+..+--|+-...
T Consensus 336 ~~~~~RHfG~~I 347 (354)
T PF01959_consen 336 LEEAGRHFGMKI 347 (354)
T ss_pred ecCCCcccceEe
Confidence 566666665443
No 141
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=54.44 E-value=64 Score=21.69 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=31.8
Q ss_pred EEecEEEEEEEeCCC-eEEEEEEeCCcEEEECCCCeeEEEecCCCcEEE
Q 038563 100 VLEGKIYSGFVDTQN-RIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATI 147 (198)
Q Consensus 100 Vl~G~~~~~~~~~~~-~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~ 147 (198)
-.+|...+.+.+.+| .++...+++||..-+..... +....|+-.++-
T Consensus 4 ~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~-~~i~iGna~~v~ 51 (77)
T PF13464_consen 4 TATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEP-FRIRIGNAGAVE 51 (77)
T ss_pred EEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCC-EEEEEeCCCcEE
Confidence 345788888887777 46889999999888844433 333455555443
No 142
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=52.49 E-value=34 Score=22.17 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=23.3
Q ss_pred EEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecC
Q 038563 106 YSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVG 141 (198)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g 141 (198)
++++.|+-||.++.+|++|..+---+|.++.-.=+|
T Consensus 11 rVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~HDdlIG 46 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEPGGEFHTHRGAIRHDDLIG 46 (54)
T ss_dssp EEEEEETT--EEEEE--TT-EEEETTEEEEHHHHTT
T ss_pred EEEEccCCCCeeeEEECCCCeEEcCccccchhheec
Confidence 467888889999999999999988888766433333
No 143
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=51.85 E-value=42 Score=33.06 Aligned_cols=53 Identities=8% Similarity=0.082 Sum_probs=35.3
Q ss_pred EEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEE
Q 038563 74 SMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVM 127 (198)
Q Consensus 74 s~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~ 127 (198)
.+....+.||..+-.--. ...++++|++|++++...+...+..-..+++||++
T Consensus 396 ~~~~~~~~pge~I~~qge-~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 396 KMKAEYIPPREDVIMQNE-APDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF 448 (823)
T ss_pred hhheeeeCCCCEEEECCC-CCceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence 344457888886543333 46789999999999854322223345679999977
No 144
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=48.70 E-value=35 Score=31.84 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=37.3
Q ss_pred eEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEE
Q 038563 73 MSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVM 127 (198)
Q Consensus 73 ls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~ 127 (198)
+.+..-.+.||-.+-.--- -+.|+++|.+|.+. +++++|...-.+|++|+++
T Consensus 328 Lklk~qvfSPgDyICrKGd-vgkEMyIVk~G~L~--Vv~dDg~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 328 LKLKPQVFSPGDYICRKGD-VGKEMYIVKEGKLA--VVADDGVTVFVTLKAGSVF 379 (536)
T ss_pred HHhcceeeCCCCeEEecCc-ccceEEEEEccEEE--EEecCCcEEEEEecCCcee
Confidence 3334445667776544433 58999999999987 4677786666899999977
No 145
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=44.26 E-value=50 Score=32.41 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=34.5
Q ss_pred EEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEE
Q 038563 79 DFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVM 127 (198)
Q Consensus 79 ~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~ 127 (198)
...||..+-..=.+ -.|++||++|++++.-.+..|......|++||++
T Consensus 446 ~f~pge~iireGd~-v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 446 YFTPGEYIIREGDP-VTDMYFIVRGSLESITTDGGGFFVVAILGPGDFF 493 (727)
T ss_pred ccCCCCeEEecCCc-cceeEEEEeeeEEEEEccCCceEEEEEecCCCcc
Confidence 45667766555554 5899999999998654433344557899999987
No 146
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=41.92 E-value=1.6e+02 Score=22.61 Aligned_cols=52 Identities=15% Similarity=0.083 Sum_probs=38.5
Q ss_pred CCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEE---ecCCCcEEEEEE
Q 038563 94 ATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQM---NVGDTWATILGS 150 (198)
Q Consensus 94 a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~---N~g~~~~~~~~~ 150 (198)
..=+.+|++|+=++.+. ++ .+...+|++++.+..++-..+ ...++|...+.+
T Consensus 23 ~p~i~~vlQG~K~~~~g---~~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l 77 (155)
T PF06719_consen 23 EPSICIVLQGSKRVHLG---DQ--VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSL 77 (155)
T ss_pred CCeEEEEEeeeEEEEEC---Cc--eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEE
Confidence 35689999999998874 34 468999999999999876543 444566655544
No 147
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=41.85 E-value=35 Score=20.61 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=18.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHhhhcCCC
Q 038563 169 NIKEELLEKAFGLTPKEIAKLRKRFAPH 196 (198)
Q Consensus 169 ~~p~~vla~af~v~~~~v~~l~~~~~~~ 196 (198)
+.+..-+|+.+|++..+|.+..+.+...
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~~~ 44 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYREE 44 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT-----
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcccc
Confidence 6888899999999999999998887543
No 148
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=41.36 E-value=26 Score=22.94 Aligned_cols=24 Identities=33% Similarity=0.659 Sum_probs=18.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHhhhc
Q 038563 170 IKEELLEKAFGLTPKEIAKLRKRF 193 (198)
Q Consensus 170 ~p~~vla~af~v~~~~v~~l~~~~ 193 (198)
=.+..|.+.+|++++++++||+.+
T Consensus 44 s~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 44 SVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp SHHHHHHHT-T--HHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHc
Confidence 477888899999999999999864
No 149
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=38.96 E-value=36 Score=25.56 Aligned_cols=26 Identities=19% Similarity=0.533 Sum_probs=20.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHhhhcC
Q 038563 169 NIKEELLEKAFGLTPKEIAKLRKRFA 194 (198)
Q Consensus 169 ~~p~~vla~af~v~~~~v~~l~~~~~ 194 (198)
+|++..+|+..++++++|+++++..+
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~~ 97 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEHG 97 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHcC
Confidence 79999999999999999999988643
No 150
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=38.92 E-value=36 Score=26.26 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=22.4
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHhhh
Q 038563 168 SNIKEELLEKAFGLTPKEIAKLRKR 192 (198)
Q Consensus 168 ~~~p~~vla~af~v~~~~v~~l~~~ 192 (198)
+.++++-||++|+++++.++++++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 3689999999999999999999864
No 151
>PLN02288 mannose-6-phosphate isomerase
Probab=37.43 E-value=27 Score=31.64 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=18.8
Q ss_pred EEEEeCCcEEEECCCCeeEEE
Q 038563 118 AKVIEKGEVMVFPRGLVHFQM 138 (198)
Q Consensus 118 ~~~l~~Gd~~~iP~G~~H~~~ 138 (198)
...|++|+.+++|+|.+|...
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl 272 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYL 272 (394)
T ss_pred eEecCCCCEEEecCCCCceec
Confidence 468999999999999999864
No 152
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=36.93 E-value=46 Score=20.08 Aligned_cols=28 Identities=11% Similarity=0.348 Sum_probs=21.3
Q ss_pred hhhccCCCHHHHHHHhCCCHHHHHHHhh
Q 038563 164 AVFGSNIKEELLEKAFGLTPKEIAKLRK 191 (198)
Q Consensus 164 ~~f~~~~p~~vla~af~v~~~~v~~l~~ 191 (198)
.++.++++-.-+|+.||++..+|-+..+
T Consensus 16 ~l~~~G~si~~IA~~~gvsr~TvyR~l~ 43 (45)
T PF02796_consen 16 ELYAEGMSIAEIAKQFGVSRSTVYRYLN 43 (45)
T ss_dssp HHHHTT--HHHHHHHTTS-HHHHHHHHC
T ss_pred HHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4666689999999999999999988765
No 153
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=35.56 E-value=2e+02 Score=25.44 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=42.0
Q ss_pred eEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCe-EEEEEEeCCcEEE
Q 038563 73 MSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNR-IFAKVIEKGEVMV 128 (198)
Q Consensus 73 ls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~-~~~~~l~~Gd~~~ 128 (198)
--+.|++++..-+..-----+..++-.+++..-++.++.++|+ .-...|++||-+.
T Consensus 299 aiVGRvKIErRPl~lIeAey~g~~i~tiLQNAETIkLv~~dG~pvSV~eLk~GD~vl 355 (376)
T COG1465 299 AIVGRVKIERRPLMLIEAEYEGVEISTILQNAETIKLVNPDGEPVSVAELKPGDEVL 355 (376)
T ss_pred EEEEEEEeecCceEEEEEEecCcEEEEEeccceeEEEEcCCCcEeeeEecCCCCEEE
Confidence 4566778887776444333457899999999999999999987 4457899999443
No 154
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=34.71 E-value=38 Score=19.40 Aligned_cols=27 Identities=15% Similarity=0.406 Sum_probs=19.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHhhhcCCC
Q 038563 170 IKEELLEKAFGLTPKEIAKLRKRFAPH 196 (198)
Q Consensus 170 ~p~~vla~af~v~~~~v~~l~~~~~~~ 196 (198)
+..+=+|...|++.++|.++.+++...
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~~~ 29 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLERQ 29 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHHHT
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHc
Confidence 456678999999999999988776543
No 155
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=34.23 E-value=2.4e+02 Score=22.48 Aligned_cols=84 Identities=17% Similarity=0.112 Sum_probs=38.2
Q ss_pred CceEEeccccCCCcC-CCCeEEEEEcccCCCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCe
Q 038563 37 EDFVFSGIKFRGKFS-ETGLASIPVNVNVFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNR 115 (198)
Q Consensus 37 ~df~~~~~~~~~~~~-~~g~~v~~~~~~~~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~ 115 (198)
+-|.|+|.... .+ ..+|.++-.|...-++.. +..+..+... +.....- .....-++|+++|++.+.. +++
T Consensus 83 ~~~~F~G~~~v--~~~l~~G~~~dfNlM~r~~~~--~~~~~~~~~~-~~~~~~~-~~~~~~l~~~~~G~~~i~~---~~~ 153 (184)
T PF05962_consen 83 QPFAFDGDWPV--TSELLDGPVRDFNLMTRRGRW--RARVRVLNQD-GTLELKL-PAASTVLVYVLEGAWSITE---GGN 153 (184)
T ss_dssp --EEEETTS-E--EEEESSS-EEEEEEEE-TTTE--EEEEEEEEEE-CEEEE-E-E--SEEEEEESSS-EEECC---CEE
T ss_pred CcEEcCCCCeE--EEEECCCCEEEEEEEecCCcc--eEEEEEEeCC-CcEEEee-CCCCEEEEEEeeCcEEEec---CCC
Confidence 35666653221 11 344556565554444433 2233322222 2222211 2235667899999876532 223
Q ss_pred EEEEEEeCCcEEEECC
Q 038563 116 IFAKVIEKGEVMVFPR 131 (198)
Q Consensus 116 ~~~~~l~~Gd~~~iP~ 131 (198)
...|.+||.+++-.
T Consensus 154 --~~~L~~~d~l~~~~ 167 (184)
T PF05962_consen 154 --CISLSAGDLLLIDD 167 (184)
T ss_dssp --EEEE-TT-EEEEES
T ss_pred --ceEcCCCCEEEEeC
Confidence 57999999998876
No 156
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=34.04 E-value=1.7e+02 Score=21.14 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=33.9
Q ss_pred CCcEecceeC---CCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCC
Q 038563 82 VGGVNVPHFH---PRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGD 142 (198)
Q Consensus 82 pg~~~~pH~H---p~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~ 142 (198)
.||++.|-++ |+..|++-|=.|. .+.+|......++.||.++|.+..---+...|.
T Consensus 22 ~gGIvlpdsakeK~~~g~VvAVG~G~-----~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~dge 80 (96)
T COG0234 22 AGGIVLPDSAKEKPQEGEVVAVGPGR-----RDENGELVPLDVKVGDRVLFGKYAGTEVKIDGE 80 (96)
T ss_pred cCcEEecCccccCCcceEEEEEccce-----ecCCCCEeccccccCCEEEECccCCcEEEECCE
Confidence 3565555554 3334444443333 234566667899999999999987755554443
No 157
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=32.98 E-value=62 Score=19.29 Aligned_cols=21 Identities=29% Similarity=0.738 Sum_probs=15.1
Q ss_pred CCCHHHHHHHhC-CCHHHHHHH
Q 038563 169 NIKEELLEKAFG-LTPKEIAKL 189 (198)
Q Consensus 169 ~~p~~vla~af~-v~~~~v~~l 189 (198)
.+|+|++.+-|. ++.+++-++
T Consensus 3 ~LP~Eil~~If~~L~~~dl~~~ 24 (47)
T PF12937_consen 3 SLPDEILLEIFSYLDPRDLLRL 24 (47)
T ss_dssp CS-HHHHHHHHTTS-HHHHHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHH
Confidence 589999999998 677776554
No 158
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=31.86 E-value=18 Score=35.80 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.4
Q ss_pred EEEEeCCcEEEECCCCeeEEEecC
Q 038563 118 AKVIEKGEVMVFPRGLVHFQMNVG 141 (198)
Q Consensus 118 ~~~l~~Gd~~~iP~G~~H~~~N~g 141 (198)
+++=.-||.++||+|.+|.++|.-
T Consensus 800 tfvQ~LGdAVfIPAGaPHQVrNLk 823 (889)
T KOG1356|consen 800 TFVQFLGDAVFIPAGAPHQVRNLK 823 (889)
T ss_pred chhhcccceEEecCCCcHHhhhhh
Confidence 455578999999999999999964
No 159
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=31.11 E-value=50 Score=20.63 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.6
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHhhh
Q 038563 168 SNIKEELLEKAFGLTPKEIAKLRKR 192 (198)
Q Consensus 168 ~~~p~~vla~af~v~~~~v~~l~~~ 192 (198)
.+++.+.||.-||++..++.++...
T Consensus 18 ~~~~~~~La~~FgIs~stvsri~~~ 42 (53)
T PF13613_consen 18 LNLTFQDLAYRFGISQSTVSRIFHE 42 (53)
T ss_pred cCCcHhHHhhheeecHHHHHHHHHH
Confidence 3789999999999999999987654
No 160
>PF13994 PgaD: PgaD-like protein
Probab=30.63 E-value=58 Score=24.77 Aligned_cols=24 Identities=33% Similarity=0.757 Sum_probs=21.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHhhhc
Q 038563 170 IKEELLEKAFGLTPKEIAKLRKRF 193 (198)
Q Consensus 170 ~p~~vla~af~v~~~~v~~l~~~~ 193 (198)
++++=+|++|+++++.++++++..
T Consensus 101 ~~~~elA~~f~l~~~~l~~lr~~k 124 (138)
T PF13994_consen 101 VSDEELARSFGLSPEQLQQLRQAK 124 (138)
T ss_pred CCHHHHHHHcCCCHHHHHHHHhCC
Confidence 788999999999999999998753
No 161
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=30.03 E-value=78 Score=22.33 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=19.2
Q ss_pred CCCeEEEEEEeCCcEEEECCCCeeEEEe
Q 038563 112 TQNRIFAKVIEKGEVMVFPRGLVHFQMN 139 (198)
Q Consensus 112 ~~~~~~~~~l~~Gd~~~iP~G~~H~~~N 139 (198)
.+|+.....++.||.+++|...---+..
T Consensus 49 ~~g~~~~~~vk~GD~Vl~~~~~g~~v~~ 76 (93)
T PF00166_consen 49 ENGEEVPMDVKVGDKVLFPKYAGTEVKF 76 (93)
T ss_dssp TTSSEEETSS-TTSEEEEETTTSEEEEE
T ss_pred CCCcEeeeeeeeccEEeccccCceEEEE
Confidence 4565556789999999999987444443
No 162
>COG1741 Pirin-related protein [General function prediction only]
Probab=28.79 E-value=3.8e+02 Score=23.07 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=29.1
Q ss_pred CCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEE
Q 038563 65 FPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSG 108 (198)
Q Consensus 65 ~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~ 108 (198)
.|.-... +....+.+++|+..+.+ =....-++||++|++.+.
T Consensus 166 ~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~ 207 (276)
T COG1741 166 SPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN 207 (276)
T ss_pred cccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc
Confidence 3444444 77788888899877766 212345789999988763
No 163
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=28.78 E-value=2.1e+02 Score=20.27 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=18.7
Q ss_pred CCeEEEEEEeCCcEEEECCCCeeEEE
Q 038563 113 QNRIFAKVIEKGEVMVFPRGLVHFQM 138 (198)
Q Consensus 113 ~~~~~~~~l~~Gd~~~iP~G~~H~~~ 138 (198)
+|+.....++.||.++++....--+.
T Consensus 50 ~g~~~~~~vk~GD~Vl~~~~~g~~v~ 75 (93)
T cd00320 50 NGERVPLSVKVGDKVLFPKYAGTEVK 75 (93)
T ss_pred CCCCccccccCCCEEEECCCCceEEE
Confidence 45555678999999999986644443
No 164
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=28.77 E-value=92 Score=23.78 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=21.3
Q ss_pred EEEEEEeCCcEEEECCCCeeEEE-ecCCCc
Q 038563 116 IFAKVIEKGEVMVFPRGLVHFQM-NVGDTW 144 (198)
Q Consensus 116 ~~~~~l~~Gd~~~iP~G~~H~~~-N~g~~~ 144 (198)
.....+++||++++...++|.-. |.++.+
T Consensus 179 ~~~~~~~~Gdvl~~~~~~~H~s~~N~s~~~ 208 (211)
T PF05721_consen 179 WVPVPMKAGDVLFFHSRLIHGSGPNTSDDP 208 (211)
T ss_dssp CEEE-BSTTEEEEEETTSEEEEE-B-SSST
T ss_pred eEEeecCCCeEEEEcCCccccCCCCCCcCc
Confidence 34678999999999999999864 555543
No 165
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=27.29 E-value=75 Score=25.01 Aligned_cols=24 Identities=29% Similarity=0.639 Sum_probs=22.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHhhh
Q 038563 169 NIKEELLEKAFGLTPKEIAKLRKR 192 (198)
Q Consensus 169 ~~p~~vla~af~v~~~~v~~l~~~ 192 (198)
.++++=+|++|+++++.++++++.
T Consensus 98 ~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 98 DLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCChHHHHHHcCCCHHHHHHHHhC
Confidence 689999999999999999999875
No 166
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=27.25 E-value=41 Score=29.83 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=52.8
Q ss_pred CCCCccccceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCC-----------------------------
Q 038563 64 VFPGLNTLGMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQN----------------------------- 114 (198)
Q Consensus 64 ~~P~l~~~gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~----------------------------- 114 (198)
.+|+.++-++.+...-.+.|.+.+.|.-|. .-++.-+.|+.++.+.-+..
T Consensus 241 ~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp~ 319 (355)
T KOG2132|consen 241 SFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFPK 319 (355)
T ss_pred ecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhhH
Confidence 455555545666666666688999997765 66777788887776653221
Q ss_pred ----eEEEEEEeCCcEEEECCCCeeEEEec
Q 038563 115 ----RIFAKVIEKGEVMVFPRGLVHFQMNV 140 (198)
Q Consensus 115 ----~~~~~~l~~Gd~~~iP~G~~H~~~N~ 140 (198)
+.....|++||++++|+-..|++...
T Consensus 320 ~~k~~~l~~lL~pGe~L~iP~kwwhyvrs~ 349 (355)
T KOG2132|consen 320 FAKARFLDCLLEPGEALFIPPKWWHYVRSL 349 (355)
T ss_pred HHHHHHHHHhcCCchhccccHHHhhhhhhc
Confidence 11135688999999999999988653
No 167
>PF04773 FecR: FecR protein; InterPro: IPR006860 FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognises iron dicitrate in the periplasm.
Probab=25.66 E-value=2.2e+02 Score=19.24 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=34.7
Q ss_pred EEEeCCcEe-cceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCC
Q 038563 78 ADFDVGGVN-VPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGL 133 (198)
Q Consensus 78 ~~l~pg~~~-~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~ 133 (198)
+.|.|+... ..-........+.+.+|++.+.+-....+ .+.++.+...+..+|.
T Consensus 21 v~l~~~s~~~~~~~~~~~~~~~~L~~G~~~~~~~~~~~~--~~~V~T~~~~i~v~GT 75 (98)
T PF04773_consen 21 VRLGPNSRVSVDRDSGSEPTRLRLLSGEILFDVSPGKKR--PFEVRTPTATIGVRGT 75 (98)
T ss_pred EEECCCcEEEEEcccCCCceEEEEcCCCEEEEEcccCCC--CEEEEeCCEEEEEecC
Confidence 466777755 22223233446888999998876532222 2688888888888884
No 168
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=25.62 E-value=2.5e+02 Score=19.93 Aligned_cols=27 Identities=7% Similarity=0.010 Sum_probs=19.2
Q ss_pred CCCeEEEEEEeCCcEEEECCCCeeEEE
Q 038563 112 TQNRIFAKVIEKGEVMVFPRGLVHFQM 138 (198)
Q Consensus 112 ~~~~~~~~~l~~Gd~~~iP~G~~H~~~ 138 (198)
.+|+.....+++||.++|++..---+.
T Consensus 50 ~~G~~~~~~vk~GD~Vlf~~~~g~ev~ 76 (95)
T PRK00364 50 DNGERVPLDVKVGDKVLFGKYAGTEVK 76 (95)
T ss_pred CCCCEeecccCCCCEEEEcCCCCeEEE
Confidence 346666778999999999975543333
No 169
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=25.57 E-value=1.3e+02 Score=19.96 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=16.8
Q ss_pred EEEeCCCeEEEEEEeCCcEEE
Q 038563 108 GFVDTQNRIFAKVIEKGEVMV 128 (198)
Q Consensus 108 ~~~~~~~~~~~~~l~~Gd~~~ 128 (198)
|++-+|||.+.++.+.|++.+
T Consensus 39 GvV~eDgR~y~F~Y~~G~i~Y 59 (62)
T PF15513_consen 39 GVVMEDGRHYTFVYENGQISY 59 (62)
T ss_pred cEEEeCCCEEEEEEeCCcEEE
Confidence 445568999999999999765
No 170
>PHA00672 hypothetical protein
Probab=24.50 E-value=3.3e+02 Score=20.94 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=52.2
Q ss_pred ceEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecCCCcEEEEEEE
Q 038563 72 GMSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVGDTWATILGSF 151 (198)
Q Consensus 72 gls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g~~~~~~~~~~ 151 (198)
|+-...++++.|....=-.| + -|-+++.+|.+.+.. +|+ ...|+.=.++.-|+|--.....-.+. .+...+
T Consensus 46 GvYARei~IPkGt~LtG~~h-k-f~~~ii~sG~itV~t---dge--~~rl~g~~~i~~~aG~KragyAHeDT--~wt~~h 116 (152)
T PHA00672 46 GVYARTIRIPAGVALTGALI-K-VSTVLIFSGHATVFI---GGE--AVELRGYHVIPASAGRKQAFVAHADT--DLTMLF 116 (152)
T ss_pred ceeEEEEeccCceeeeeeee-E-eeEEEEecccEEEEe---CCc--EEEEecceeeecCCCcccceeeeccc--eEEEEe
Confidence 78888999999998777777 3 455599999999875 255 35788888888898887766654333 344444
Q ss_pred e
Q 038563 152 D 152 (198)
Q Consensus 152 ~ 152 (198)
.
T Consensus 117 ~ 117 (152)
T PHA00672 117 P 117 (152)
T ss_pred c
Confidence 3
No 171
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=24.15 E-value=2.1e+02 Score=23.80 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=20.8
Q ss_pred EEEEeCCcEEEECCCCeeEEEecCC
Q 038563 118 AKVIEKGEVMVFPRGLVHFQMNVGD 142 (198)
Q Consensus 118 ~~~l~~Gd~~~iP~G~~H~~~N~g~ 142 (198)
...+++|+++++|...+|...-...
T Consensus 142 ~Vkp~aG~~vlfps~~lH~v~pVt~ 166 (226)
T PRK05467 142 RVKLPAGDLVLYPSTSLHRVTPVTR 166 (226)
T ss_pred EEecCCCeEEEECCCCceeeeeccC
Confidence 5678999999999999999876433
No 172
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=22.42 E-value=1.1e+02 Score=25.82 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=28.1
Q ss_pred EEEEeCCcEEEECCCCeeEE-EecCCCc-EEEEEEEeCC
Q 038563 118 AKVIEKGEVMVFPRGLVHFQ-MNVGDTW-ATILGSFDSQ 154 (198)
Q Consensus 118 ~~~l~~Gd~~~iP~G~~H~~-~N~g~~~-~~~~~~~~s~ 154 (198)
...+++||++++-.-++|.- .|.++.+ ..++..|++.
T Consensus 212 ~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~ 250 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSV 250 (277)
T ss_pred eeccCCceEEEEccccccCCCCCCCCCcceeEEEEEecC
Confidence 45789999999999999985 4666553 5666677653
No 173
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=22.12 E-value=1.4e+02 Score=28.90 Aligned_cols=50 Identities=16% Similarity=0.283 Sum_probs=33.0
Q ss_pred eEEEEEEEeCCcEecceeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEE
Q 038563 73 MSMVRADFDVGGVNVPHFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVM 127 (198)
Q Consensus 73 ls~~~~~l~pg~~~~pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~ 127 (198)
+......-.||-++ -|+-..-.-+.||++|++++-- ++++ ...|.+||+|
T Consensus 569 m~f~~~H~APGDLl-YHtGESvDaLcFvVsGSLEVIQ---DDEV-VAILGKGDVF 618 (971)
T KOG0501|consen 569 MEFQTNHCAPGDLL-YHTGESVDALCFVVSGSLEVIQ---DDEV-VAILGKGDVF 618 (971)
T ss_pred HHHHhccCCCccee-eecCCccceEEEEEecceEEee---cCcE-EEEeecCccc
Confidence 33334455666654 3444445668999999999753 3444 4799999987
No 174
>PHA02699 hypothetical protein; Provisional
Probab=22.11 E-value=2.6e+02 Score=25.42 Aligned_cols=77 Identities=13% Similarity=0.257 Sum_probs=43.4
Q ss_pred EEEEEeCCcEec-ceeCCCCCE--EEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCCCeeE-EEecCCCcEEEEEEE
Q 038563 76 VRADFDVGGVNV-PHFHPRATE--IAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRGLVHF-QMNVGDTWATILGSF 151 (198)
Q Consensus 76 ~~~~l~pg~~~~-pH~Hp~a~E--i~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~-~~N~g~~~~~~~~~~ 151 (198)
..++|+-|.... -|.++...- .+.+++-++..++.-++-+..+..++.||++++|+--.-. +--+|-+-..+|..+
T Consensus 146 ~LVKLkHGN~fm~~~m~~~sagFvAtICIKNeGiSgI~Vp~T~~lktnmqeGD~IVsRSsRGI~FLPQIGGeAiYLIVsL 225 (466)
T PHA02699 146 QALKLKHDEWYMRHHMAPDMAAFVAIICIKNEGMAAIAVNNTKFLKTNIQEGDAIVFPAARGMFFLPHIGGDAEYIILTL 225 (466)
T ss_pred EEEEeeccchhhcccccCcccceEEEEEEcCCCeeEEEecCCcceeeeeecCCEEEEehhchhhhhhhcCCceEEEEEEE
Confidence 345566555322 233443333 3456776666665544334457899999999999754332 223455555555555
Q ss_pred e
Q 038563 152 D 152 (198)
Q Consensus 152 ~ 152 (198)
.
T Consensus 226 ~ 226 (466)
T PHA02699 226 T 226 (466)
T ss_pred e
Confidence 4
No 175
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=21.92 E-value=1.1e+02 Score=20.16 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHhhhcC
Q 038563 170 IKEELLEKAFGLTPKEIAKLRKRFA 194 (198)
Q Consensus 170 ~p~~vla~af~v~~~~v~~l~~~~~ 194 (198)
+...-||+.+|++..+++++-..+.
T Consensus 23 ~ta~eLa~~lgl~~~~v~r~L~~L~ 47 (68)
T smart00550 23 STALQLAKNLGLPKKEVNRVLYSLE 47 (68)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7888999999999999998866543
No 176
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=21.31 E-value=61 Score=28.40 Aligned_cols=41 Identities=17% Similarity=0.405 Sum_probs=26.7
Q ss_pred eeCCCCCEEEEEEecEEEEEEEeCCCeEEEEEEeCCcEEEECCC
Q 038563 89 HFHPRATEIAVVLEGKIYSGFVDTQNRIFAKVIEKGEVMVFPRG 132 (198)
Q Consensus 89 H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~l~~Gd~~~iP~G 132 (198)
|+||+. -|...+.+..++++++--.....-++||.+++=..
T Consensus 131 hthpd~---~y~vl~v~i~gl~~~e~Ii~s~~Ak~GD~lI~~~d 171 (324)
T COG2144 131 HTHPDT---PYCVLDVVIGGLIAEEPIITSGTAKPGDLLIFVGD 171 (324)
T ss_pred ccCCCC---CCceeeeEEecccccccccccCCCCcCCEEEEEec
Confidence 999764 45577777777766543222456789998876443
No 177
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=20.65 E-value=1.1e+02 Score=30.21 Aligned_cols=64 Identities=17% Similarity=0.336 Sum_probs=40.5
Q ss_pred EEeCCcE-ecceeCCCCCEEEEEEecEEEE----------------EEEeCCCeEEEEEEeCCcEEEECCCCeeEEEecC
Q 038563 79 DFDVGGV-NVPHFHPRATEIAVVLEGKIYS----------------GFVDTQNRIFAKVIEKGEVMVFPRGLVHFQMNVG 141 (198)
Q Consensus 79 ~l~pg~~-~~pH~Hp~a~Ei~yVl~G~~~~----------------~~~~~~~~~~~~~l~~Gd~~~iP~G~~H~~~N~g 141 (198)
-+.+|+- +--|.+ ...-++|.|..+..- -|.+.-.+-+.-.|++|+.++||.|.+|...-.-
T Consensus 142 hidfggtsvwyhil-~G~K~f~lI~pt~~nl~~ye~w~~s~~q~~~ffGd~VdkC~~~~l~~g~T~~iPsGwIhAV~Tp~ 220 (776)
T KOG1633|consen 142 HIDFGGTSVWYHIL-AGEKTFYLIPPTCENLELYECWESSTPQDEIFFGDCVDKCYKCILKQGQTLFIPSGWIHAVLTPT 220 (776)
T ss_pred ccCCCCcchhhhhh-ccccceeeeCCcccchhhhhhhhhcccccccccCCccceeEEEEeccCceEecccceeEeeecCc
Confidence 3455553 455777 567777777665431 1111112334578999999999999999988654
Q ss_pred CC
Q 038563 142 DT 143 (198)
Q Consensus 142 ~~ 143 (198)
+.
T Consensus 221 d~ 222 (776)
T KOG1633|consen 221 DC 222 (776)
T ss_pred ch
Confidence 43
Done!