BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038564
         (353 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
           Nucleoside Kinase - An Archaeal Member Of The Ribokinase
           Family
 pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
           Nucleoside Kinase - An Archaeal Member Of The Ribokinase
           Family
 pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
           Nucleoside Kinase - An Archaeal Member Of The Ribokinase
           Family
          Length = 302

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 196 VRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQ-IDPTGAGDSFXXXXXXXXXXXXXXP 254
           + ++  ++VT G +GS +Y +D K+++    A + IDPTGAGDS+               
Sbjct: 205 LERVDALIVTKGSKGSVIYTKDKKIEIPCIKAGKVIDPTGAGDSYRAGFLSAYVKGYDLE 264

Query: 255 DAALLGNFFGSITVA----QIGLPKFDSRVLQRVK 285
              L+G    S  V     Q  LP +D +V++R++
Sbjct: 265 KCGLIGAATASFVVEAKGCQTNLPTWD-KVVERLE 298


>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
 pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
 pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound 2-Keto-3-Deoxygluconate And Adp
 pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound 2-Keto-3-Deoxygluconate And Adp
 pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound Atp
 pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound Atp
 pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound Atp
 pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound Atp
 pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
 pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
 pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
 pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
 pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
 pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
          Length = 309

 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 165 PLKESGFY-HLLPKIGFLKASSEEA--LFMDVEE-VRKLCC--VVVTNGREGSEVYYRDG 218
           P +  GF    LP +  L  S EEA  LF  VEE +R L    VV+  G +G+  +    
Sbjct: 173 PEEARGFLERALPGVDLLFLSEEEAELLFGRVEEALRALSAPEVVLKRGAKGAWAFVDGR 232

Query: 219 KVKVSPFLANQIDPTGAGDSFXXXXXXXXXXXXXXPDAALLGNFFGSITVAQIG 272
           +V+ S F    +DP GAGD+F               +   L N  G+   A  G
Sbjct: 233 RVEGSAFAVEAVDPVGAGDAFAAGYLAGAVWGLPVEERLRLANLLGASVAASRG 286


>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
           With Atp And Mg+2 From E.Coli
 pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
           With Atp And Mg+2 From E.Coli
 pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
           From E.Coli
 pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
           From E.Coli
          Length = 330

 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 1/100 (1%)

Query: 202 VVVTNGREGSEVYYRDGKVKVSPFLANQIDPTGAGDSFXXXXXXXXXXXXXXPDAALLGN 261
           V+V  G +G+  Y  + +  V  +   ++DPTGAGD F                A    N
Sbjct: 225 VIVKRGNQGASYYSANEQFHVESYPVEEVDPTGAGDCFGGAWIACRQLGFDAHRALQYAN 284

Query: 262 FFGSITVAQIGLPKFDSRVLQRVKDEVQRRKLSCSERRDE 301
             G++ V + G  +  SR L  ++  +QR   S  E   E
Sbjct: 285 ACGALAVTRRGPXEGTSR-LXEIETFIQRHDXSIREAAQE 323


>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Complex With Adp-Mizoribine
 pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Complex With Adp-Mizoribine
 pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Ligand-Free Form
 pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Ligand-Free Form
 pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Complex With Adp-Inosine
 pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Complex With Inosine
 pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Complex With Inosine
 pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Complex With Inosine
 pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Complex With Inosine
 pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Complex With Inosine
 pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Complex With Inosine
          Length = 326

 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 194 EEVRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQ-IDPTGAGDSFXXXXXXXXXXXXX 252
           E   ++  +++T G  G+ + +RDG  ++    A + IDPTG GD+F             
Sbjct: 209 EIASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFD 268

Query: 253 XPDAALLGNFFGSITVAQIG 272
              A  L +  G++ +A  G
Sbjct: 269 WATAGRLASLMGALKIAHQG 288


>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Complex With Amp-Mg-Amp
 pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Complex With Amp-Mg-Amp
 pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Complex With Amp-Mg-Amp
 pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Complex With Amp-Mg-Amp
 pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Complex With Amp-Mg-Amp
 pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
           (Bthnk) In Complex With Amp-Mg-Amp
          Length = 320

 Score = 38.9 bits (89), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 194 EEVRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQ-IDPTGAGDSFXXXXXXXXXXXXX 252
           E   ++  +++T G  G+ + +RDG  ++    A + IDPTG GD+F             
Sbjct: 217 EIASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFD 276

Query: 253 XPDAALLGNFFGSITVAQIG 272
              A  L +  G++ +A  G
Sbjct: 277 WATAGRLASLMGALKIAHQG 296


>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
           Ph1459 From Pyrococcus Horikoshii
 pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
           Ph1459 From Pyrococcus Horikoshii
          Length = 313

 Score = 36.2 bits (82), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 180 FLKASSEEALFMDVE--EVRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQIDPTGAGD 237
            +KAS EE L+++ +  EV+      +T G +G  +   +  V V  +  N +D TGAGD
Sbjct: 188 IVKASEEEVLYLENQGVEVKGSXLTAITLGPKGCRLIKNETVVDVPSYNVNPLDTTGAGD 247

Query: 238 SF 239
           +F
Sbjct: 248 AF 249


>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
           Ph1459 From Pyrococcus Horikoshii In Complex With Atp
 pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
           Ph1459 From Pyrococcus Horikoshii In Complex With Atp
 pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
           Ph1459 From Pyrococcus Horikoshii In Complex With Atp
 pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
           Ph1459 From Pyrococcus Horikoshii In Complex With Atp
 pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
           Ph1459 From Pyrococcus Horikoshii In Complex With
           Amp-Pnp
 pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
           Ph1459 From Pyrococcus Horikoshii In Complex With
           Amp-Pnp
          Length = 313

 Score = 35.8 bits (81), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 180 FLKASSEEALFMDVE--EVRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQIDPTGAGD 237
            +KAS EE L+++ +  EV+      +T G +G  +   +  V V  +  N +D TGAGD
Sbjct: 188 IVKASEEEVLYLENQGVEVKGSXLTAITLGPKGFRLIKNETVVDVPSYNVNPLDTTGAGD 247

Query: 238 SF 239
           +F
Sbjct: 248 AF 249


>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
           From Klebsiella Pneumoniae
 pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
           From Klebsiella Pneumoniae
 pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
           From Klebsiella Pneumoniae
 pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
           From Klebsiella Pneumoniae
 pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
           Glycerol In The Active Site From Klebsiella Pneumoniae
 pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
           Glycerol In The Active Site From Klebsiella Pneumoniae
 pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
           Glycerol In The Active Site From Klebsiella Pneumoniae
 pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
           Glycerol In The Active Site From Klebsiella Pneumoniae
          Length = 299

 Score = 35.0 bits (79), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 162 NPVPLKESGFYHLLPKIGFLKASSEEALFMDVEEVRKLCCVVVTNGREGSEVYYRDGKVK 221
           NP P+    F HL P I     +  EA  +    V+ L   V+T G  G+ +  ++G+ +
Sbjct: 163 NPSPVNPD-FCHLWPLIDIAVVNESEAELLQPYGVKTL---VITQGAAGAWLV-QEGQRQ 217

Query: 222 VSPFL-ANQIDPTGAGDSF 239
             P + A  +D TGAGD+F
Sbjct: 218 FCPAVPAEALDTTGAGDTF 236


>pdb|3BF5|A Chain A, Crystal Structure Of Putative Ribokinase (10640157) From
           Thermoplasma Acidophilum At 1.91 A Resolution
 pdb|3BF5|B Chain B, Crystal Structure Of Putative Ribokinase (10640157) From
           Thermoplasma Acidophilum At 1.91 A Resolution
          Length = 306

 Score = 31.6 bits (70), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 200 CCVVVTNGREGSEVYYRDGKVKVSPFLANQIDPTGAGDSF 239
              +VTNG  GS ++  DGK    P + +  D  GAGDSF
Sbjct: 210 VTTIVTNGERGSSLF-XDGKKYDFPAIPSSGDTVGAGDSF 248


>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
           (Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
           13032 Kitasato At 1.89 A Resolution
 pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
           (Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
           13032 Kitasato At 1.89 A Resolution
 pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
           (Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
           13032 Kitasato At 1.89 A Resolution
 pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
           (Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
           13032 Kitasato At 1.89 A Resolution
          Length = 319

 Score = 31.2 bits (69), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 197 RKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQIDPTGAGDSF 239
           R +   +V  G +G     +D  V+V PF  + I+  GAGD+F
Sbjct: 225 RGVELAIVKQGPKGVXAXTKDETVEVPPFFVDVINGLGAGDAF 267


>pdb|4E8W|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
           Complex With An Atp-Competitive Inhibitor
 pdb|4E8W|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
           Complex With An Atp-Competitive Inhibitor
 pdb|4E8Y|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
           Complex With An Atp-Competitive Inhibitor
 pdb|4E8Y|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
           Complex With An Atp-Competitive Inhibitor
 pdb|4E8Z|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
           Complex With An Atp-Competitive Inhibitor
 pdb|4E8Z|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
           Complex With An Atp-Competitive Inhibitor
          Length = 352

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 182 KASSEEALFMDVEEVRK---LCCVVVTNGREGSEVYYRDGKVKVSPFLANQI-DPTGAGD 237
           +  SE+ L   V  +R    +  +++T   EG  ++   G++  +P LA ++ D +GAGD
Sbjct: 248 QWKSEDDLRARVANLRAELDIDALLLTRSEEGMTLFSAGGELH-APALAREVFDVSGAGD 306

Query: 238 SFXXXXXXXXXXXXXXPDAALLGNFFGSITVAQIGLPKFD 277
           +                DA +L N    I V ++G    D
Sbjct: 307 TVIATVATMLGAGVPLVDAVVLANRAAGIVVGKLGTATVD 346


>pdb|4E84|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda
 pdb|4E84|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda
          Length = 352

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 182 KASSEEALFMDVEEVRK---LCCVVVTNGREGSEVYYRDGKVKVSPFLANQI-DPTGAGD 237
           +  SE+ L   V  +R    +  +++T   EG  ++   G++  +P LA ++ D +GAGD
Sbjct: 248 QWKSEDDLRARVANLRAELDIDALLLTRSEEGXTLFSAGGELH-APALAREVFDVSGAGD 306

Query: 238 SFXXXXXXXXXXXXXXPDAALLGNFFGSITVAQIGLPKFD 277
           +                DA +L N    I V ++G    D
Sbjct: 307 TVIATVATXLGAGVPLVDAVVLANRAAGIVVGKLGTATVD 346


>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
           Sinorhizobium Meliloti
 pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
           Sinorhizobium Meliloti
          Length = 354

 Score = 30.0 bits (66), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 196 VRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQI-DPTGAGDSFXXXXXXXXXXXXXXP 254
            R      VT   EGS V     +V+V   +  Q+ D TGAGD +               
Sbjct: 238 ARDCKLAAVTLSEEGSVVVRGAERVRVGASVLEQVVDTTGAGDLYAAGFLFGYTSGRSLE 297

Query: 255 DAALLGNFFGSITVAQIG 272
           + + LGN    I + QIG
Sbjct: 298 ECSKLGNLAAGIVIGQIG 315


>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
           Tepidum In Complex With Amp
 pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
           Tepidum In Complex With Amp
          Length = 313

 Score = 28.9 bits (63), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 201 CVVVTNGREGSEVYYRDGKVKVSPF-LANQIDPTGAGDSFXXXXXXXXXXXXXXPD---- 255
            +++  G  G+ ++  +G      F L +  DPTGAGD+F               +    
Sbjct: 202 TLIIKKGEHGALLFTDNGIFAAPAFPLESIYDPTGAGDTFAGGFIGHLARCGNTSEAEXR 261

Query: 256 -AALLGNFFGSITVAQIGLPKFDSRVLQRVKDEVQ 289
            A L G+   S  V Q G  +++   L  V D  Q
Sbjct: 262 KAVLYGSAXASFCVEQFGPYRYNDLDLLEVDDRYQ 296


>pdb|3NBV|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
           And Fructose
 pdb|3NBV|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
           And Fructose
 pdb|3NBW|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
           Pyrazole Compound
 pdb|3NBW|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
           Pyrazole Compound
 pdb|3NC2|A Chain A, X-Ray Structure Of Ketohexokinase With A Quinazoline
 pdb|3NC2|B Chain B, X-Ray Structure Of Ketohexokinase With A Quinazoline
 pdb|3NC9|A Chain A, X-Ray Structure Of Ketohexokinase Complexed With An
           Indazole Compound
 pdb|3NC9|B Chain B, X-Ray Structure Of Ketohexokinase Complexed With An
           Indazole Compound
 pdb|3NCA|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
           Pyridinol Compound
 pdb|3NCA|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
           Pyridinol Compound
 pdb|3RO4|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With An
           Indazole Compound Derivative
 pdb|3RO4|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With An
           Indazole Compound Derivative
 pdb|3Q92|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
           Pyrimidopyrimidine Analog 1
 pdb|3Q92|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
           Pyrimidopyrimidine Analog 1
 pdb|3QA2|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
           Pyrimidopyrimidine Analog 2
 pdb|3QA2|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
           Pyrimidopyrimidine Analog 2
 pdb|3QAI|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
           Pyrimidopyrimidine Analog 3
 pdb|3QAI|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
           Pyrimidopyrimidine Analog 3
          Length = 313

 Score = 28.5 bits (62), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 178 IGFLKASSEEALFMDVEEVRKLCCVVVTNGREGSEVYYRDGKVKVSPFL--ANQIDPTGA 235
           +GF   S+EEAL      VRK   +V     EG++    DGK+  S        +D  GA
Sbjct: 214 LGF--QSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGA 271

Query: 236 GDSF 239
           GD+F
Sbjct: 272 GDTF 275


>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
           Js666
 pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
           Js666
 pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
           Js666
 pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
           Js666
          Length = 336

 Score = 28.5 bits (62), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 202 VVVTNGREGSEVYYRDGKVKVSPF-LANQIDPTGAGDSFXXXXXXXXXXXXXXPDAALLG 260
           VVV  G EG+      G  +V+ F +A  +D  GAGD F              P+A   G
Sbjct: 249 VVVKLGAEGAYFDGEAGSGRVAGFPVAEVVDTVGAGDGFAVGVISALLDGLGVPEAVKRG 308

Query: 261 NFFGSITVAQIG 272
            + G+  V  +G
Sbjct: 309 AWIGARAVQVLG 320


>pdb|2HLZ|A Chain A, Crystal Structure Of Human Ketohexokinase (Casp Target)
 pdb|2HLZ|B Chain B, Crystal Structure Of Human Ketohexokinase (Casp Target)
 pdb|2HLZ|C Chain C, Crystal Structure Of Human Ketohexokinase (Casp Target)
 pdb|2HLZ|D Chain D, Crystal Structure Of Human Ketohexokinase (Casp Target)
          Length = 312

 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 178 IGFLKASSEEALFMDVEEVRKLCCVVVTNGREGSEVYYRDGKVKVSPFL--ANQIDPTGA 235
           +GF   S+EEAL      VRK   +V     EG++    DGK+  S        +D  GA
Sbjct: 213 LGF--QSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGA 270

Query: 236 GDSF 239
           GD+F
Sbjct: 271 GDTF 274


>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
 pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
          Length = 327

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 4/41 (9%)

Query: 201 CVVVTNGREGSEVYYRDGK--VKVSPFLANQIDPTGAGDSF 239
            V++T G EG  V   DG+  +++  F  + +D TGAGD+F
Sbjct: 239 AVILTLGEEG--VIASDGEEIIRIPAFSEDAVDVTGAGDAF 277


>pdb|3B3L|A Chain A, Crystal Structures Of Alternatively-Spliced Isoforms Of
           Human Ketohexokinase
 pdb|3B3L|B Chain B, Crystal Structures Of Alternatively-Spliced Isoforms Of
           Human Ketohexokinase
 pdb|3B3L|C Chain C, Crystal Structures Of Alternatively-Spliced Isoforms Of
           Human Ketohexokinase
 pdb|3B3L|D Chain D, Crystal Structures Of Alternatively-Spliced Isoforms Of
           Human Ketohexokinase
          Length = 298

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 178 IGFLKASSEEALFMDVEEVRKLCCVVVTNGREGSEVYYRDGKVKVSPFL--ANQIDPTGA 235
           +GF   S+EEAL      VRK   +V     EG++    DGK+  S        +D  GA
Sbjct: 199 LGF--QSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGA 256

Query: 236 GDSF 239
           GD+F
Sbjct: 257 GDTF 260


>pdb|2HQQ|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
           Different Sugar Molecules
 pdb|2HW1|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
           Different Sugar Molecules
          Length = 298

 Score = 28.5 bits (62), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 178 IGFLKASSEEALFMDVEEVRKLCCVVVTNGREGSEVYYRDGKVKVSPFL--ANQIDPTGA 235
           +GF   S+EEAL      VRK   +V     EG++    DGK+  S        +D  GA
Sbjct: 199 LGF--QSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGA 256

Query: 236 GDSF 239
           GD+F
Sbjct: 257 GDTF 260


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,408,559
Number of Sequences: 62578
Number of extensions: 421767
Number of successful extensions: 815
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 27
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)