BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038565
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S6K|A Chain A, Crystal Structure Of Xcnags
Length = 467
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 32 PQKFAMVHKVFGASNELPVH------QRADAVSSLVYEANARVRDPVYGCVGAI 79
P A+V KVF ASN V RA +++ V+EA RD YG VG +
Sbjct: 126 PHALAIVRKVFQASNLKLVEALQQNGARATSITGGVFEAEYLNRD-TYGLVGEV 178
>pdb|3BEX|A Chain A, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate
pdb|3BEX|B Chain B, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate
pdb|3BEX|C Chain C, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate
pdb|3BEX|D Chain D, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate
pdb|3BEX|E Chain E, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate
pdb|3BEX|F Chain F, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate
pdb|3BF1|A Chain A, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate And Adp
pdb|3BF1|B Chain B, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate And Adp
pdb|3BF1|C Chain C, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate And Adp
pdb|3BF1|D Chain D, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate And Adp
pdb|3BF1|E Chain E, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate And Adp
pdb|3BF1|F Chain F, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate And Adp
pdb|3BF3|A Chain A, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Product Phosphopantothenate
pdb|3BF3|B Chain B, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Product Phosphopantothenate
pdb|3BF3|C Chain C, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Product Phosphopantothenate
pdb|3BF3|D Chain D, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Product Phosphopantothenate
pdb|3BF3|E Chain E, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Product Phosphopantothenate
pdb|3BF3|F Chain F, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Product Phosphopantothenate
Length = 249
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 32 PQKFAMVHKVFGASNELPVHQR--ADAVSSLVYEANAR---VRDPVYGCVGAISYLQNQV 86
P F MVH +F + +LP+ + AD V E N R V VY G I ++
Sbjct: 150 PGFFMMVHSLFRGTAKLPLVEVKPADFVVGKDTEENIRLGVVNGSVYALEGIIGRIKEVY 209
Query: 87 SQLQMQLAVAQAEIL 101
L + L Q++I+
Sbjct: 210 GDLPVVLTGGQSKIV 224
>pdb|2GTD|A Chain A, Crystal Structure Of A Type Iii Pantothenate Kinase:
Insight Into The Catalysis Of An Essential Coenzyme A
Biosynthetic Enzyme Universally Distributed In Bacteria
pdb|2GTD|B Chain B, Crystal Structure Of A Type Iii Pantothenate Kinase:
Insight Into The Catalysis Of An Essential Coenzyme A
Biosynthetic Enzyme Universally Distributed In Bacteria
pdb|2GTD|C Chain C, Crystal Structure Of A Type Iii Pantothenate Kinase:
Insight Into The Catalysis Of An Essential Coenzyme A
Biosynthetic Enzyme Universally Distributed In Bacteria
pdb|2GTD|D Chain D, Crystal Structure Of A Type Iii Pantothenate Kinase:
Insight Into The Catalysis Of An Essential Coenzyme A
Biosynthetic Enzyme Universally Distributed In Bacteria
pdb|2GTD|E Chain E, Crystal Structure Of A Type Iii Pantothenate Kinase:
Insight Into The Catalysis Of An Essential Coenzyme A
Biosynthetic Enzyme Universally Distributed In Bacteria
pdb|2GTD|F Chain F, Crystal Structure Of A Type Iii Pantothenate Kinase:
Insight Into The Catalysis Of An Essential Coenzyme A
Biosynthetic Enzyme Universally Distributed In Bacteria
Length = 251
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 32 PQKFAMVHKVFGASNELPVHQR--ADAVSSLVYEANAR---VRDPVYGCVGAISYLQNQV 86
P F MVH +F + +LP+ + AD V E N R V VY G I ++
Sbjct: 152 PGFFMMVHSLFRGTAKLPLVEVKPADFVVGKDTEENIRLGVVNGSVYALEGIIGRIKEVY 211
Query: 87 SQLQMQLAVAQAEIL 101
L + L Q++I+
Sbjct: 212 GDLPVVLTGGQSKIV 226
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 92 QLAVAQAEILCIQMQQDPPAVSLPTQIDHHQDHDRSLLLSCSN--INPQLLAAGFAS 146
+L A I I+M+ D PA +LP+ D+D ++L + IN +LLA S
Sbjct: 95 ELPALLARIYLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGS 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,439,097
Number of Sequences: 62578
Number of extensions: 143424
Number of successful extensions: 352
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 4
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)