Query 038565
Match_columns 163
No_of_seqs 138 out of 314
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 12:20:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 7.4E-48 1.6E-52 288.8 8.0 95 6-100 1-101 (101)
2 COG3416 Uncharacterized protei 79.2 5.9 0.00013 34.4 5.9 67 40-106 11-77 (233)
3 PF13334 DUF4094: Domain of un 78.6 2 4.3E-05 32.1 2.6 24 76-99 72-95 (95)
4 KOG1655 Protein involved in va 75.2 8.4 0.00018 33.2 5.7 52 39-105 2-54 (218)
5 PF09849 DUF2076: Uncharacteri 69.3 15 0.00033 31.8 6.1 70 33-102 4-73 (247)
6 PF05308 Mito_fiss_reg: Mitoch 67.9 8.5 0.00018 33.4 4.3 29 83-111 121-149 (253)
7 PF09006 Surfac_D-trimer: Lung 60.5 24 0.00053 23.7 4.4 27 79-105 1-27 (46)
8 PF06698 DUF1192: Protein of u 59.8 23 0.00049 24.7 4.4 26 79-104 23-48 (59)
9 PRK10265 chaperone-modulator p 52.7 33 0.00073 25.3 4.6 32 73-104 67-98 (101)
10 PF06305 DUF1049: Protein of u 52.2 30 0.00066 22.9 4.0 24 80-103 44-67 (68)
11 COG5509 Uncharacterized small 52.2 29 0.00062 24.8 3.9 24 79-102 27-50 (65)
12 PF12325 TMF_TATA_bd: TATA ele 51.4 38 0.00083 26.3 4.9 35 74-108 13-47 (120)
13 PRK00888 ftsB cell division pr 49.3 35 0.00075 25.7 4.3 33 73-105 21-55 (105)
14 PF10883 DUF2681: Protein of u 49.1 35 0.00075 25.5 4.2 30 79-108 32-61 (87)
15 PF04977 DivIC: Septum formati 48.7 54 0.0012 21.9 4.9 31 79-109 19-49 (80)
16 PF14282 FlxA: FlxA-like prote 47.4 43 0.00093 25.0 4.5 26 79-104 53-78 (106)
17 PF05120 GvpG: Gas vesicle pro 45.2 29 0.00062 25.4 3.2 39 71-109 8-46 (79)
18 PF12097 DUF3573: Protein of u 44.6 27 0.00058 32.4 3.5 22 78-99 43-64 (383)
19 PF04728 LPP: Lipoprotein leuc 43.8 60 0.0013 22.5 4.4 23 79-101 12-34 (56)
20 PRK10803 tol-pal system protei 42.9 42 0.00091 28.7 4.3 27 77-103 54-80 (263)
21 PF13591 MerR_2: MerR HTH fami 42.3 33 0.00071 24.4 3.1 23 75-97 61-83 (84)
22 cd00928 Cyt_c_Oxidase_VIIa Cyt 41.6 19 0.00042 24.9 1.7 34 34-67 4-37 (55)
23 PF13600 DUF4140: N-terminal d 40.6 62 0.0013 23.3 4.4 31 76-106 69-99 (104)
24 cd04766 HTH_HspR Helix-Turn-He 40.4 56 0.0012 23.1 4.1 30 70-100 59-88 (91)
25 PHA02562 46 endonuclease subun 38.1 53 0.0011 29.8 4.4 23 23-45 141-163 (562)
26 PRK09039 hypothetical protein; 37.5 55 0.0012 29.2 4.4 27 77-103 137-163 (343)
27 PF04706 Dickkopf_N: Dickkopf 37.0 17 0.00037 24.6 0.9 16 5-20 21-36 (52)
28 PF06818 Fez1: Fez1; InterPro 36.6 64 0.0014 27.5 4.4 32 76-107 9-40 (202)
29 PF03242 LEA_3: Late embryogen 36.6 12 0.00027 28.0 0.2 20 61-80 58-77 (93)
30 PF04977 DivIC: Septum formati 36.1 78 0.0017 21.1 4.1 26 78-103 25-50 (80)
31 PF14282 FlxA: FlxA-like prote 35.8 59 0.0013 24.3 3.7 25 83-107 50-74 (106)
32 PF07334 IFP_35_N: Interferon- 33.7 74 0.0016 23.3 3.8 26 79-104 2-27 (76)
33 PHA02047 phage lambda Rz1-like 32.2 1.2E+02 0.0025 23.5 4.8 23 83-105 33-55 (101)
34 PF14197 Cep57_CLD_2: Centroso 31.3 1.2E+02 0.0025 21.4 4.4 33 74-106 37-69 (69)
35 PF11853 DUF3373: Protein of u 31.2 49 0.0011 31.6 3.2 33 70-103 18-50 (489)
36 PF15397 DUF4618: Domain of un 31.1 82 0.0018 27.7 4.3 60 34-104 49-108 (258)
37 PF08657 DASH_Spc34: DASH comp 30.4 1E+02 0.0023 26.8 4.8 39 69-107 172-210 (259)
38 PF06696 Strep_SA_rep: Strepto 30.4 1.2E+02 0.0026 17.9 3.7 21 82-102 3-23 (25)
39 smart00338 BRLZ basic region l 30.1 1.5E+02 0.0034 19.6 4.7 28 77-104 33-60 (65)
40 PRK00295 hypothetical protein; 29.3 2E+02 0.0043 20.0 5.4 27 78-104 27-53 (68)
41 PRK02793 phi X174 lysis protei 29.2 1.9E+02 0.0041 20.4 5.2 27 78-104 30-56 (72)
42 PRK02119 hypothetical protein; 28.6 1.9E+02 0.0042 20.4 5.2 26 78-103 31-56 (73)
43 PF04508 Pox_A_type_inc: Viral 27.1 97 0.0021 18.0 2.8 18 79-96 3-20 (23)
44 PLN02523 galacturonosyltransfe 27.0 1.6E+02 0.0035 28.8 5.8 46 51-101 155-200 (559)
45 TIGR03021 pilP_fam type IV pil 26.8 1.7E+02 0.0037 22.5 5.0 27 76-102 4-30 (119)
46 PRK10884 SH3 domain-containing 26.5 96 0.0021 26.0 3.8 28 79-106 134-161 (206)
47 PF15483 DUF4641: Domain of un 26.4 69 0.0015 30.4 3.2 30 72-102 414-443 (445)
48 PF12325 TMF_TATA_bd: TATA ele 25.7 1.5E+02 0.0032 23.0 4.5 29 77-105 30-58 (120)
49 PRK04406 hypothetical protein; 25.7 2.2E+02 0.0048 20.3 5.1 25 78-102 33-57 (75)
50 PRK00846 hypothetical protein; 25.6 2.3E+02 0.005 20.6 5.2 30 77-106 34-63 (77)
51 PF13600 DUF4140: N-terminal d 25.6 1.2E+02 0.0027 21.7 3.8 26 78-103 78-103 (104)
52 PRK14127 cell division protein 25.5 2E+02 0.0044 22.1 5.2 30 79-108 39-68 (109)
53 TIGR02209 ftsL_broad cell divi 25.2 1.5E+02 0.0032 20.4 4.0 29 79-107 26-54 (85)
54 PF04012 PspA_IM30: PspA/IM30 25.1 1.8E+02 0.0039 23.5 5.1 42 55-103 8-49 (221)
55 PRK00736 hypothetical protein; 24.8 2.5E+02 0.0053 19.6 5.2 26 78-103 27-52 (68)
56 TIGR02209 ftsL_broad cell divi 24.2 1.6E+02 0.0034 20.2 4.0 25 78-102 32-56 (85)
57 smart00150 SPEC Spectrin repea 24.2 2.1E+02 0.0047 18.7 5.1 38 69-106 23-60 (101)
58 PF07106 TBPIP: Tat binding pr 24.0 1.4E+02 0.0031 23.3 4.3 16 30-45 18-33 (169)
59 PF05377 FlaC_arch: Flagella a 23.8 1.8E+02 0.0038 20.1 4.1 19 79-97 16-34 (55)
60 PRK15396 murein lipoprotein; P 23.2 1.3E+02 0.0029 21.9 3.6 28 78-105 26-53 (78)
61 PLN02742 Probable galacturonos 22.9 2.9E+02 0.0063 26.9 6.7 64 34-101 108-178 (534)
62 PF08227 DASH_Hsk3: DASH compl 22.6 2.2E+02 0.0048 18.8 4.2 24 79-102 4-27 (45)
63 PRK14625 hypothetical protein; 22.3 1.4E+02 0.0031 22.8 3.8 27 79-105 4-30 (109)
64 PF07716 bZIP_2: Basic region 22.2 2.3E+02 0.005 18.3 4.6 26 79-104 27-52 (54)
65 PF12718 Tropomyosin_1: Tropom 21.9 1.8E+02 0.0038 22.9 4.3 28 78-105 36-63 (143)
66 PRK11239 hypothetical protein; 21.8 1.5E+02 0.0034 25.5 4.2 31 76-106 182-212 (215)
67 PF12808 Mto2_bdg: Micro-tubul 21.5 2.7E+02 0.0059 18.9 5.5 43 54-97 7-49 (52)
68 PF04420 CHD5: CHD5-like prote 21.5 1.2E+02 0.0027 24.1 3.4 31 75-105 64-94 (161)
69 PF11336 DUF3138: Protein of u 21.1 1.2E+02 0.0026 29.2 3.7 28 76-103 24-51 (514)
70 PRK14623 hypothetical protein; 21.1 1.6E+02 0.0034 22.5 3.8 27 79-105 3-29 (106)
71 PF04340 DUF484: Protein of un 21.0 1.8E+02 0.004 23.8 4.5 32 68-102 34-65 (225)
72 PF05308 Mito_fiss_reg: Mitoch 21.0 1.1E+02 0.0024 26.5 3.3 33 75-111 120-152 (253)
73 PRK14626 hypothetical protein; 20.9 1.8E+02 0.0038 22.2 4.0 28 77-104 5-32 (110)
74 PF14257 DUF4349: Domain of un 20.7 2.1E+02 0.0047 23.8 4.9 34 75-108 160-193 (262)
75 PLN02910 polygalacturonate 4-a 20.3 3.8E+02 0.0082 26.8 7.0 64 34-101 231-299 (657)
76 TIGR02231 conserved hypothetic 20.2 1.6E+02 0.0035 27.2 4.3 30 78-107 72-101 (525)
77 PF00172 Zn_clus: Fungal Zn(2) 20.2 55 0.0012 20.1 0.9 15 5-19 1-15 (40)
78 KOG4218 Nuclear hormone recept 20.1 69 0.0015 30.1 1.9 54 4-58 57-111 (475)
79 PF05529 Bap31: B-cell recepto 20.0 1.6E+02 0.0034 23.6 3.8 32 78-109 155-186 (192)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=7.4e-48 Score=288.76 Aligned_cols=95 Identities=71% Similarity=1.210 Sum_probs=93.1
Q ss_pred CChhhhhhhcCCCCCCccCCCCCCCChHHHHHHHhhhCCCC------CCCccchHHHHHHHHHHHhccccCCCcccHHHH
Q 038565 6 PCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAVSSLVYEANARVRDPVYGCVGAI 79 (163)
Q Consensus 6 ~CAACK~lRRrC~~~C~lAPYFPa~~~~~F~~vhkvFG~sN------~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I 79 (163)
+|||||+|||||+++|+||||||++++++|++||||||++| .+|+++|+++|+||+|||++|.+||||||+|+|
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i 80 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII 80 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence 69999999999999999999999999999999999999999 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038565 80 SYLQNQVSQLQMQLAVAQAEI 100 (163)
Q Consensus 80 ~~Lq~qi~~lq~eL~~~q~el 100 (163)
+.|+|||+++++||+.++++|
T Consensus 81 ~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999875
No 2
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.19 E-value=5.9 Score=34.37 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=55.3
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038565 40 KVFGASNELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 106 (163)
Q Consensus 40 kvFG~sN~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~q 106 (163)
.+|-+-.......|+..+..||-||-++.-|--|=-+-.|..+++-|..++.+|+.++.+|+.++.-
T Consensus 11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333333334457889999999999999999999999999999999999999999999998887763
No 3
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=78.64 E-value=2 Score=32.11 Aligned_cols=24 Identities=46% Similarity=0.573 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 76 VGAISYLQNQVSQLQMQLAVAQAE 99 (163)
Q Consensus 76 vG~I~~Lq~qi~~lq~eL~~~q~e 99 (163)
.-.|..|...|..||+||+.+|++
T Consensus 72 h~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 72 HEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 446889999999999999998864
No 4
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.19 E-value=8.4 Score=33.15 Aligned_cols=52 Identities=21% Similarity=0.350 Sum_probs=34.9
Q ss_pred HhhhCCCC-CCCccchHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 39 HKVFGASN-ELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 39 hkvFG~sN-~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
||+||+.| ..|+..=.++..|+=- |. -.+..+|.+|.+||...+.+|...|.
T Consensus 2 nRiFG~~k~k~p~psL~dai~~v~~----r~-----------dSve~KIskLDaeL~k~~~Qi~k~R~ 54 (218)
T KOG1655|consen 2 NRIFGRGKPKEPPPSLQDAIDSVNK----RS-----------DSVEKKISKLDAELCKYKDQIKKTRP 54 (218)
T ss_pred cccccCCCCCCCChhHHHHHHHHHH----hh-----------hhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 79999999 5565555566666532 22 24667777777777777777776653
No 5
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=69.32 E-value=15 Score=31.80 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=57.6
Q ss_pred HHHHHHHhhhCCCCCCCccchHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 33 QKFAMVHKVFGASNELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILC 102 (163)
Q Consensus 33 ~~F~~vhkvFG~sN~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~ 102 (163)
+.=..+..||.+=..++...|+.-++.||-|+-.|.-|-+|=-+=.|..++.-|++++++|+.++++|..
T Consensus 4 eE~qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 4 EERQLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555666655555556788899999999999999999999999999999999999999999988765
No 6
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=67.93 E-value=8.5 Score=33.37 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 038565 83 QNQVSQLQMQLAVAQAEILCIQMQQDPPA 111 (163)
Q Consensus 83 q~qi~~lq~eL~~~q~el~~~~~q~~~~~ 111 (163)
-++|..||.||+.+|++|+.|-..|.+..
T Consensus 121 lqKIsALEdELs~LRaQIA~IV~~qe~~~ 149 (253)
T PF05308_consen 121 LQKISALEDELSRLRAQIAKIVAAQEQSN 149 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 36788899999999999998775554443
No 7
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=60.52 E-value=24 Score=23.70 Aligned_cols=27 Identities=33% Similarity=0.252 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
|..|.+|+..|+.+|..+|+....++-
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999888776553
No 8
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=59.76 E-value=23 Score=24.72 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
|-.|+..|..|++|++.++++|..-+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999998888887644
No 9
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=52.74 E-value=33 Score=25.31 Aligned_cols=32 Identities=6% Similarity=0.148 Sum_probs=27.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 73 YGCVGAISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 73 yGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
+-.+++|..|-.+|+.|+.|+...++.|..+-
T Consensus 67 ~~gialvl~LLd~i~~Lr~el~~L~~~l~~~~ 98 (101)
T PRK10265 67 WPGIAVALTLLDEIAHLKQENRLLRQRLSRFV 98 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34688999999999999999999999876543
No 10
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=52.19 E-value=30 Score=22.91 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 80 SYLQNQVSQLQMQLAVAQAEILCI 103 (163)
Q Consensus 80 ~~Lq~qi~~lq~eL~~~q~el~~~ 103 (163)
..+++++.+++.+++.++.|+...
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566778888888888888777653
No 11
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=52.16 E-value=29 Score=24.84 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILC 102 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~ 102 (163)
|-.|.+.|..||+|++.+++|++.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777777777777777654
No 12
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=51.44 E-value=38 Score=26.32 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 038565 74 GCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQD 108 (163)
Q Consensus 74 GcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~q~~ 108 (163)
..+.+|..|+.+|.+++.|+..++.++..+..+..
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~ 47 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERD 47 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888888887665543
No 13
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=49.29 E-value=35 Score=25.65 Aligned_cols=33 Identities=21% Similarity=0.104 Sum_probs=22.2
Q ss_pred cccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 73 YGCVG--AISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 73 yGcvG--~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
+|--| .+..++++++.++.+++.++++...++.
T Consensus 21 ~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 21 FGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 4677888888888888877766555443
No 14
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=49.10 E-value=35 Score=25.47 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQMQQD 108 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~~q~~ 108 (163)
+-.|+.+.++++.|.+.+++++...+-++.
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrqk 61 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVRQK 61 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777778888888888888887765553
No 15
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=48.67 E-value=54 Score=21.90 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQMQQDP 109 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~~q~~~ 109 (163)
+..+++++..++.+++..+.+...++.+-..
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888887777776666544333
No 16
>PF14282 FlxA: FlxA-like protein
Probab=47.40 E-value=43 Score=25.04 Aligned_cols=26 Identities=42% Similarity=0.395 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
+..|+.||..|+++|+.++.+...-.
T Consensus 53 ~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666665554433
No 17
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=45.15 E-value=29 Score=25.37 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=22.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 038565 71 PVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDP 109 (163)
Q Consensus 71 PVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~q~~~ 109 (163)
||.|.+-+.-+++.+.+.---+-+.++++|...+++-..
T Consensus 8 Pvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L~~~~e~ 46 (79)
T PF05120_consen 8 PVRGVVWVAEQIQEQAERELYDPAAIRRELAELQEALEA 46 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHc
Confidence 555544444444544443333456788888888766543
No 18
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=44.59 E-value=27 Score=32.41 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038565 78 AISYLQNQVSQLQMQLAVAQAE 99 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~e 99 (163)
.|..||+||..||.||..+++.
T Consensus 43 ~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 43 EISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888877766654
No 19
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=43.84 E-value=60 Score=22.50 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEIL 101 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~ 101 (163)
|+.|..+|.+|..++..++.++.
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666555544
No 20
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=42.89 E-value=42 Score=28.72 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 77 GAISYLQNQVSQLQMQLAVAQAEILCI 103 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q~el~~~ 103 (163)
..+..|++||+.++.|+..++-+|...
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~ 80 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQEN 80 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 356788888888888888887766643
No 21
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=42.34 E-value=33 Score=24.43 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 038565 75 CVGAISYLQNQVSQLQMQLAVAQ 97 (163)
Q Consensus 75 cvG~I~~Lq~qi~~lq~eL~~~q 97 (163)
.+++|.+|-.+|+.|+.||...+
T Consensus 61 gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 61 GIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 47889999999999999998765
No 22
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=41.55 E-value=19 Score=24.85 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=29.3
Q ss_pred HHHHHHhhhCCCCCCCccchHHHHHHHHHHHhcc
Q 038565 34 KFAMVHKVFGASNELPVHQRADAVSSLVYEANAR 67 (163)
Q Consensus 34 ~F~~vhkvFG~sN~lp~~~R~~a~~SLvYEA~aR 67 (163)
+-....|+|.+.|.+|.+.+.-+++.++|-+.+=
T Consensus 4 kv~~~Qk~FQ~~ng~PV~LKGG~~D~~LYr~Tm~ 37 (55)
T cd00928 4 KVKELQKKFQADDGLPVHLKGGVVDRILYRLTMA 37 (55)
T ss_pred hhHHHHHHhcCCCCceEEecCCchhHHHHHHHHH
Confidence 3456789999999999999999999999987763
No 23
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=40.56 E-value=62 Score=23.26 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038565 76 VGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 106 (163)
Q Consensus 76 vG~I~~Lq~qi~~lq~eL~~~q~el~~~~~q 106 (163)
-..+..|+.+|+.++.+++.+++++...+.+
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888888888887766543
No 24
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=40.43 E-value=56 Score=23.10 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=20.6
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 70 DPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 100 (163)
Q Consensus 70 DPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el 100 (163)
-|+-|.. .|..|..+++.++.||+..++++
T Consensus 59 ~~l~~i~-~~l~l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 59 VNLAGVK-RILELEEELAELRAELDELRARL 88 (91)
T ss_pred CCHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555543 44458888888888888887765
No 25
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.11 E-value=53 Score=29.84 Aligned_cols=23 Identities=17% Similarity=0.527 Sum_probs=11.1
Q ss_pred cCCCCCCCChHHHHHHHhhhCCC
Q 038565 23 FAPYFPSDDPQKFAMVHKVFGAS 45 (163)
Q Consensus 23 lAPYFPa~~~~~F~~vhkvFG~s 45 (163)
|.|.++.....+-..+.++||..
T Consensus 141 f~~f~~~~~~er~~il~~l~~~~ 163 (562)
T PHA02562 141 YVPFMQLSAPARRKLVEDLLDIS 163 (562)
T ss_pred hhhHhcCChHhHHHHHHHHhCCH
Confidence 33444444444555555555544
No 26
>PRK09039 hypothetical protein; Validated
Probab=37.50 E-value=55 Score=29.18 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 77 GAISYLQNQVSQLQMQLAVAQAEILCI 103 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q~el~~~ 103 (163)
-.|..|++||+.|+.+|+.++++|...
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777766666543
No 27
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=37.04 E-value=17 Score=24.60 Aligned_cols=16 Identities=44% Similarity=1.119 Sum_probs=14.5
Q ss_pred CCChhhhhhhcCCCCC
Q 038565 5 SPCASCKLLRRRCAKD 20 (163)
Q Consensus 5 ~~CAACK~lRRrC~~~ 20 (163)
+.|..||-+|++|..|
T Consensus 21 ~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 21 SKCLPCRKRRKRCTRD 36 (52)
T ss_pred ccChhhccCCCCCCCC
Confidence 6799999999999975
No 28
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=36.61 E-value=64 Score=27.47 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 038565 76 VGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ 107 (163)
Q Consensus 76 vG~I~~Lq~qi~~lq~eL~~~q~el~~~~~q~ 107 (163)
.|-|+.|++|+.+.++|++.--.+|..++.|-
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql 40 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQL 40 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 58899999999999999887666776655443
No 29
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=36.59 E-value=12 Score=28.01 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=16.3
Q ss_pred HHHHhccccCCCcccHHHHH
Q 038565 61 VYEANARVRDPVYGCVGAIS 80 (163)
Q Consensus 61 vYEA~aR~rDPVyGcvG~I~ 80 (163)
-.|-..|..|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 66778999999999986544
No 30
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=36.07 E-value=78 Score=21.11 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILCI 103 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~~ 103 (163)
-|..|+.+++.++.+....+.++...
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666666666666555
No 31
>PF14282 FlxA: FlxA-like protein
Probab=35.75 E-value=59 Score=24.29 Aligned_cols=25 Identities=44% Similarity=0.443 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q 038565 83 QNQVSQLQMQLAVAQAEILCIQMQQ 107 (163)
Q Consensus 83 q~qi~~lq~eL~~~q~el~~~~~q~ 107 (163)
+.++..|+++|..++++|+.++.+.
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666554
No 32
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=33.74 E-value=74 Score=23.32 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
|..|+.+..+|+++|..+.+||....
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888887777776533
No 33
>PHA02047 phage lambda Rz1-like protein
Probab=32.15 E-value=1.2e+02 Score=23.53 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 038565 83 QNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 83 q~qi~~lq~eL~~~q~el~~~~~ 105 (163)
+...+++.++|+.++.+|..+|.
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~ 55 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQR 55 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655553
No 34
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=31.33 E-value=1.2e+02 Score=21.44 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038565 74 GCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 106 (163)
Q Consensus 74 GcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~q 106 (163)
|.+.-+...-..+.+|+.|+...+.+|...++|
T Consensus 37 ~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 37 SAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 455556666777888888888888887766553
No 35
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=31.18 E-value=49 Score=31.59 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=22.8
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 70 DPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI 103 (163)
Q Consensus 70 DPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~ 103 (163)
.|.....--+..+| ||++|+.||+.+++++..+
T Consensus 18 ~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~~l 50 (489)
T PF11853_consen 18 LPAAAMADDIDLLQ-KIEALKKQLEELKAQQDDL 50 (489)
T ss_pred cchhhhhhhhHHHH-HHHHHHHHHHHHHHhhccc
Confidence 44444444555566 9999999999888886643
No 36
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=31.06 E-value=82 Score=27.72 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=39.3
Q ss_pred HHHHHHhhhCCCCCCCccchHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 34 KFAMVHKVFGASNELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 34 ~F~~vhkvFG~sN~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
.|..+-.++..+| +.+-+.+++=+-|..-+.. --++.|++|+..|.+.+..++.++..+.
T Consensus 49 ~~~~~i~~le~~~----~~~l~~ak~eLqe~eek~e-------~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 49 IYRTAIDILEYSN----HKQLQQAKAELQEWEEKEE-------SKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHHHHccC----hHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 2334455555555555543 4678999999999999999999987654
No 37
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=30.39 E-value=1e+02 Score=26.78 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=33.7
Q ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 038565 69 RDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ 107 (163)
Q Consensus 69 rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~q~ 107 (163)
.-|+.|.-.-|..|.++...+..+++..+++|+.-+.|-
T Consensus 172 vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL 210 (259)
T PF08657_consen 172 VYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQL 210 (259)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999999999988655443
No 38
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=30.36 E-value=1.2e+02 Score=17.87 Aligned_cols=21 Identities=29% Similarity=0.205 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038565 82 LQNQVSQLQMQLAVAQAEILC 102 (163)
Q Consensus 82 Lq~qi~~lq~eL~~~q~el~~ 102 (163)
.|..+...++||+.+|.+.+.
T Consensus 3 Yqakla~YqaeLa~vqk~na~ 23 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKANAD 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 356677788888888877654
No 39
>smart00338 BRLZ basic region leucin zipper.
Probab=30.13 E-value=1.5e+02 Score=19.65 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 77 GAISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
+-|..|..+...|+.++..++.++..+.
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 40
>PRK00295 hypothetical protein; Provisional
Probab=29.27 E-value=2e+02 Score=20.01 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
+|...|++|..++.+|..+..++....
T Consensus 27 ~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 27 VLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666677777777766666665544
No 41
>PRK02793 phi X174 lysis protein; Provisional
Probab=29.25 E-value=1.9e+02 Score=20.38 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
+|...|.+|..++.+|..+..+|...+
T Consensus 30 ~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 30 TVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345556666666666666666555543
No 42
>PRK02119 hypothetical protein; Provisional
Probab=28.59 E-value=1.9e+02 Score=20.41 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILCI 103 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~~ 103 (163)
+|..-|++|..++.+|..+..+|...
T Consensus 31 ~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 31 ALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566666666666655555443
No 43
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=27.07 E-value=97 Score=18.02 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038565 79 ISYLQNQVSQLQMQLAVA 96 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~ 96 (163)
|..|...|.+|+.+|+.-
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567888889998888753
No 44
>PLN02523 galacturonosyltransferase
Probab=26.98 E-value=1.6e+02 Score=28.79 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=38.0
Q ss_pred cchHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 51 HQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEIL 101 (163)
Q Consensus 51 ~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~ 101 (163)
.+|..+|+.++++|.. +|-|..+|.+|+..|..+++++..++.+-+
T Consensus 155 ~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~ 200 (559)
T PLN02523 155 KERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGA 200 (559)
T ss_pred HHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999993 444678999999999999999998776643
No 45
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=26.77 E-value=1.7e+02 Score=22.53 Aligned_cols=27 Identities=37% Similarity=0.401 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 76 VGAISYLQNQVSQLQMQLAVAQAEILC 102 (163)
Q Consensus 76 vG~I~~Lq~qi~~lq~eL~~~q~el~~ 102 (163)
+|-+..||.+...++++++.++++-..
T Consensus 4 ~~eLe~iQ~et~LleAq~~~akaq~el 30 (119)
T TIGR03021 4 VGQLEALQSETALLEAQLARAKAQNEL 30 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999888888876655433
No 46
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.46 E-value=96 Score=26.04 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQMQ 106 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~~q 106 (163)
|..|+.+.++|+.||+.+++++...+.+
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5557777778888888777777654443
No 47
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=26.41 E-value=69 Score=30.38 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=22.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 72 VYGCVGAISYLQNQVSQLQMQLAVAQAEILC 102 (163)
Q Consensus 72 VyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~ 102 (163)
+-||---| .||++|++|++||+.+|.-...
T Consensus 414 ~qGCpRC~-~LQkEIedLreQLaamqsl~~k 443 (445)
T PF15483_consen 414 AQGCPRCL-VLQKEIEDLREQLAAMQSLADK 443 (445)
T ss_pred CCCCcccH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 34555544 5899999999999999875443
No 48
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.69 E-value=1.5e+02 Score=23.03 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 77 GAISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
|-|..|++++..++.+-..+.+||...-.
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~ 58 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLME 58 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999888888888876543
No 49
>PRK04406 hypothetical protein; Provisional
Probab=25.66 E-value=2.2e+02 Score=20.27 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILC 102 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~ 102 (163)
+|...|++|..|+.+|..+..++..
T Consensus 33 ~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 33 ALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555556666655555555443
No 50
>PRK00846 hypothetical protein; Provisional
Probab=25.60 E-value=2.3e+02 Score=20.62 Aligned_cols=30 Identities=3% Similarity=-0.093 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038565 77 GAISYLQNQVSQLQMQLAVAQAEILCIQMQ 106 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q~el~~~~~q 106 (163)
.+|...+.+|..++.+|..+..+|...+.+
T Consensus 34 ~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 34 EALADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 355667777777777777777777666643
No 51
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=25.56 E-value=1.2e+02 Score=21.68 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILCI 103 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~~ 103 (163)
.|..|+.++..++.++..+++++..+
T Consensus 78 ~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 78 ELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678888888888888888877654
No 52
>PRK14127 cell division protein GpsB; Provisional
Probab=25.53 E-value=2e+02 Score=22.11 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQMQQD 108 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~~q~~ 108 (163)
+-.|..++..|+.++..++.+|..++.+..
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556666666666666666666665444
No 53
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=25.19 E-value=1.5e+02 Score=20.36 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQMQQ 107 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~~q~ 107 (163)
+..++.++..++.+++.++++...++.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei 54 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEV 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666665555555444433
No 54
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=25.11 E-value=1.8e+02 Score=23.53 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 55 DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI 103 (163)
Q Consensus 55 ~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~ 103 (163)
.++++-+-++--++.||. ..|.+.|.+++.+|..++..++..
T Consensus 8 ~~~~a~~~~~ld~~EDP~-------~~l~q~ird~e~~l~~a~~~~a~~ 49 (221)
T PF04012_consen 8 TLVKANINELLDKAEDPE-------KMLEQAIRDMEEQLRKARQALARV 49 (221)
T ss_pred HHHHHHHHHHHHhhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888889987 566777777777777766666543
No 55
>PRK00736 hypothetical protein; Provisional
Probab=24.80 E-value=2.5e+02 Score=19.56 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILCI 103 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~~ 103 (163)
+|..-|++|..|+.+|..+..++...
T Consensus 27 ~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 27 QLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666665555443
No 56
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=24.25 E-value=1.6e+02 Score=20.22 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILC 102 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~ 102 (163)
-+..+++++.+++.|-...+.|+..
T Consensus 32 ~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 32 ELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 57
>smart00150 SPEC Spectrin repeats.
Probab=24.16 E-value=2.1e+02 Score=18.66 Aligned_cols=38 Identities=8% Similarity=0.125 Sum_probs=30.6
Q ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038565 69 RDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 106 (163)
Q Consensus 69 rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~q 106 (163)
.+|+.+.+..+..+..+...++.++...+..+..+...
T Consensus 23 ~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~ 60 (101)
T smart00150 23 SEDLGKDLESVEALLKKHEALEAELEAHEERVEALNEL 60 (101)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35667889999999999999999998888887765543
No 58
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.05 E-value=1.4e+02 Score=23.33 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=10.0
Q ss_pred CChHHHHHHHhhhCCC
Q 038565 30 DDPQKFAMVHKVFGAS 45 (163)
Q Consensus 30 ~~~~~F~~vhkvFG~s 45 (163)
+-..-|.|+|+-||-+
T Consensus 18 s~~di~~nL~~~~~K~ 33 (169)
T PF07106_consen 18 SAQDIFDNLHNKVGKT 33 (169)
T ss_pred cHHHHHHHHHhhccHH
Confidence 3345677888866643
No 59
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.79 E-value=1.8e+02 Score=20.13 Aligned_cols=19 Identities=5% Similarity=0.190 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038565 79 ISYLQNQVSQLQMQLAVAQ 97 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q 97 (163)
|..++.+++++..++..+.
T Consensus 16 i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 60
>PRK15396 murein lipoprotein; Provisional
Probab=23.19 E-value=1.3e+02 Score=21.85 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
-+-+|+.+|+.|..+...+..++...+.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~ 53 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRS 53 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888877777777776665553
No 61
>PLN02742 Probable galacturonosyltransferase
Probab=22.93 E-value=2.9e+02 Score=26.88 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=48.4
Q ss_pred HHHHHHhhhCCCC---CC-C---ccchHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 34 KFAMVHKVFGASN---EL-P---VHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEIL 101 (163)
Q Consensus 34 ~F~~vhkvFG~sN---~l-p---~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~ 101 (163)
+-....++.|-+. ++ | ...+-.+|+.++++|.-= -|.|--++.+|...|..+++|+..++.+-+
T Consensus 108 ~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak~~----~~d~~~~~~klr~~l~~~e~~~~~~~~q~~ 178 (534)
T PLN02742 108 QIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQDL----HYDSATTIMTLKAHIQALEERANAATVQST 178 (534)
T ss_pred HHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777665 33 2 355778999999988653 456999999999999999999988776543
No 62
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=22.64 E-value=2.2e+02 Score=18.83 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILC 102 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~ 102 (163)
+++|..|+.+|++-|+.+.+.+..
T Consensus 4 ~s~L~~qL~qL~aNL~~t~~~l~~ 27 (45)
T PF08227_consen 4 YSHLASQLAQLQANLADTENLLEM 27 (45)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 577888888888888887766553
No 63
>PRK14625 hypothetical protein; Provisional
Probab=22.33 E-value=1.4e+02 Score=22.85 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
+..+.+|.+.+|.++..+|++|....-
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~~~v 30 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAETTV 30 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEE
Confidence 677888999999999999999987653
No 64
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=22.15 E-value=2.3e+02 Score=18.33 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
+..|+.++..|+.+...++.+|..++
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777777776666544
No 65
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.91 E-value=1.8e+02 Score=22.92 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
-|..|+..+..++.+|..++.+|.....
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777665543
No 66
>PRK11239 hypothetical protein; Provisional
Probab=21.78 E-value=1.5e+02 Score=25.55 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038565 76 VGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 106 (163)
Q Consensus 76 vG~I~~Lq~qi~~lq~eL~~~q~el~~~~~q 106 (163)
.+.+..|+.+|..|++|++..++++..+..|
T Consensus 182 ~~~~~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 182 NAVDGDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455779999999999999999888877653
No 67
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=21.55 E-value=2.7e+02 Score=18.91 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 038565 54 ADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQ 97 (163)
Q Consensus 54 ~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q 97 (163)
.+...-+.-|=++|..|+ .|+---|..|..+...|+++|...|
T Consensus 7 ~ELe~klkaerE~R~~d~-~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 7 EELERKLKAEREARSLDR-SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHhHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667777888899887 4566667777777777777776554
No 68
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=21.50 E-value=1.2e+02 Score=24.06 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 75 CVGAISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 75 cvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
=+.--.+|+++++.+++||+..++++...+.
T Consensus 64 eFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 64 EFAKWAKLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677999999999999998888765443
No 69
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=21.14 E-value=1.2e+02 Score=29.21 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 76 VGAISYLQNQVSQLQMQLAVAQAEILCI 103 (163)
Q Consensus 76 vG~I~~Lq~qi~~lq~eL~~~q~el~~~ 103 (163)
.--|..|+.||..||.|...++++|+.-
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa~ 51 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAAK 51 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3457788888888888888888887643
No 70
>PRK14623 hypothetical protein; Provisional
Probab=21.13 E-value=1.6e+02 Score=22.51 Aligned_cols=27 Identities=4% Similarity=0.159 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
+..+..|.+++|.++..+|++|....-
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~~~v 29 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDTVLI 29 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEE
Confidence 677888999999999999999887663
No 71
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=21.03 E-value=1.8e+02 Score=23.76 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=18.9
Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 68 VRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILC 102 (163)
Q Consensus 68 ~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~ 102 (163)
+..|.. |+|+-.+.|+..++++....+.++..
T Consensus 34 ~ph~~~---~avSL~erQ~~~LR~~~~~L~~~l~~ 65 (225)
T PF04340_consen 34 LPHPSG---GAVSLVERQLERLRERNRQLEEQLEE 65 (225)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC---CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445542 68888888888888777777766653
No 72
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=20.96 E-value=1.1e+02 Score=26.55 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 038565 75 CVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPA 111 (163)
Q Consensus 75 cvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~q~~~~~ 111 (163)
..--|+.||.+|..|++|||.+ ...|.++....
T Consensus 120 AlqKIsALEdELs~LRaQIA~I----V~~qe~~~~~~ 152 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAKI----VAAQEQSNSTT 152 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhccccccccC
Confidence 3467999999999999999764 34555554444
No 73
>PRK14626 hypothetical protein; Provisional
Probab=20.88 E-value=1.8e+02 Score=22.22 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 77 GAISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
|=+..+..|.+++|.++..+|++|+...
T Consensus 5 gn~~~mmkqaq~mQ~km~~~qeeL~~~~ 32 (110)
T PRK14626 5 GNLAELMKQMQSIKENVEKAKEELKKEE 32 (110)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 4577888899999999999999998765
No 74
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.66 E-value=2.1e+02 Score=23.83 Aligned_cols=34 Identities=9% Similarity=0.247 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 038565 75 CVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQD 108 (163)
Q Consensus 75 cvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~q~~ 108 (163)
-+.-|..++++|.+++.||+.++.++..+..+-.
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5778889999999999999999999887776543
No 75
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=20.26 E-value=3.8e+02 Score=26.84 Aligned_cols=64 Identities=17% Similarity=0.297 Sum_probs=50.1
Q ss_pred HHHHHHhhhCCCC---CCCc--cchHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 34 KFAMVHKVFGASN---ELPV--HQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEIL 101 (163)
Q Consensus 34 ~F~~vhkvFG~sN---~lp~--~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~ 101 (163)
+.....++.|-+. +||+ .++-.+|.-++++|. +=-|.|--++.+|...|..++.|+...+.+-+
T Consensus 231 ~i~e~~r~ls~a~~d~dlp~~~~~k~~~M~~~l~~ak----~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~ 299 (657)
T PLN02910 231 QFRENKRAIGEATSDAELHSSALDQAKAMGHVLSIAK----DQLYDCHTMARKLRAMLQSTERKVDALKKKSA 299 (657)
T ss_pred HHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHH----hcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777665 6775 457889999998875 55678999999999999999999998776644
No 76
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.23 E-value=1.6e+02 Score=27.22 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILCIQMQQ 107 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~~~~q~ 107 (163)
.|..|+.+|..++.+|+.+++++...+.+.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888777766555433
No 77
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=20.17 E-value=55 Score=20.10 Aligned_cols=15 Identities=20% Similarity=0.764 Sum_probs=10.2
Q ss_pred CCChhhhhhhcCCCC
Q 038565 5 SPCASCKLLRRRCAK 19 (163)
Q Consensus 5 ~~CAACK~lRRrC~~ 19 (163)
.+|..|+..+.+|..
T Consensus 1 ~aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 1 RACDRCRRRKVKCDG 15 (40)
T ss_dssp -SBHHHHHHTS--ST
T ss_pred CcChHHHhhCcCcCC
Confidence 368889998888886
No 78
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=20.14 E-value=69 Score=30.15 Aligned_cols=54 Identities=22% Similarity=0.399 Sum_probs=35.6
Q ss_pred CCCChhhhhhhcCCCCCCccCCCCCCCChHHHHHHHhhhCCCCC-CCccchHHHHH
Q 038565 4 SSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASNE-LPVHQRADAVS 58 (163)
Q Consensus 4 ~~~CAACK~lRRrC~~~C~lAPYFPa~~~~~F~~vhkvFG~sN~-lp~~~R~~a~~ 58 (163)
++.|-.=|.+|+||| .|.|.-|+.-.-.-.-..+-|+=|-+|. -|-.+|+.|.+
T Consensus 57 ~qnC~iDkTqRKRCP-~CRFQKCLtvGMklEAVRADRMRGGRNKFGpmYKrDRAlk 111 (475)
T KOG4218|consen 57 EQNCHIDKTQRKRCP-SCRFQKCLTVGMKLEAVRADRMRGGRNKFGPMYKRDRALK 111 (475)
T ss_pred ccccccchHhhccCC-chhHHHHhhhhhhHHHHHHhhhcccccccCchhhhhHHHH
Confidence 356777789999997 5888888765432222345677788884 35556665543
No 79
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.04 E-value=1.6e+02 Score=23.59 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILCIQMQQDP 109 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~~~~q~~~ 109 (163)
....+..+|++++.||+.++.++...+.|-..
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888887777666443
Done!