Query 038565
Match_columns 163
No_of_seqs 138 out of 314
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 21:30:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 83.1 2 6.7E-05 25.8 4.1 28 77-104 2-29 (33)
2 2er8_A Regulatory protein Leu3 73.2 8 0.00027 24.9 5.2 21 77-97 49-69 (72)
3 1nkp_B MAX protein, MYC proto- 63.0 12 0.00041 25.4 4.6 32 76-107 46-77 (83)
4 1am9_A Srebp-1A, protein (ster 57.4 18 0.00063 24.8 4.8 29 76-104 49-77 (82)
5 1zme_C Proline utilization tra 53.0 13 0.00045 23.6 3.3 26 76-101 43-68 (70)
6 4e61_A Protein BIM1; EB1-like 50.5 27 0.00091 26.0 5.0 29 74-102 1-29 (106)
7 3r4h_A Coiled coil helix CC-TE 49.6 27 0.00092 21.0 3.9 28 77-104 2-29 (34)
8 3myf_A Sensor protein; HPT, hi 48.3 69 0.0024 22.8 6.9 64 33-98 51-114 (119)
9 2xdj_A Uncharacterized protein 48.2 29 0.001 24.3 4.7 25 78-102 21-45 (83)
10 2l5g_B Putative uncharacterize 48.2 25 0.00084 22.4 3.8 27 81-107 6-32 (42)
11 3ra3_B P2F; coiled coil domain 47.0 25 0.00084 20.3 3.4 25 79-103 2-26 (28)
12 2z5i_A TM, general control pro 43.3 41 0.0014 21.6 4.4 28 78-105 13-40 (52)
13 1hlo_A Protein (transcription 42.0 25 0.00087 23.7 3.5 23 76-98 56-78 (80)
14 2zvf_A Alanyl-tRNA synthetase; 39.2 96 0.0033 22.8 6.6 48 57-104 12-59 (171)
15 2dgc_A Protein (GCN4); basic d 36.8 66 0.0023 21.2 4.8 30 77-106 30-59 (63)
16 1uuj_A Platelet-activating fac 34.9 17 0.00057 26.2 1.6 24 79-102 60-83 (88)
17 3nmd_A CGMP dependent protein 34.5 57 0.0019 22.7 4.3 27 78-104 41-67 (72)
18 1nlw_A MAD protein, MAX dimeri 33.9 75 0.0025 21.7 4.9 30 76-105 46-75 (80)
19 1rtm_1 Mannose-binding protein 33.5 47 0.0016 23.5 3.9 23 82-104 2-24 (149)
20 2qdq_A Talin-1; dimerisation d 32.8 1E+02 0.0035 20.1 5.1 26 82-107 13-38 (50)
21 3mud_A DNA repair protein XRCC 32.4 62 0.0021 25.9 4.8 45 49-104 118-162 (175)
22 1ic2_A Tropomyosin alpha chain 31.8 71 0.0024 21.6 4.4 27 77-103 41-67 (81)
23 2yy0_A C-MYC-binding protein; 31.7 83 0.0029 20.2 4.5 27 79-105 21-47 (53)
24 1zxa_A CGMP-dependent protein 31.3 68 0.0023 21.9 4.2 30 78-107 26-55 (67)
25 2wg5_A General control protein 30.2 60 0.002 23.3 4.0 27 79-105 9-35 (109)
26 3pbf_A Pulmonary surfactant-as 28.9 43 0.0015 23.4 3.0 23 78-100 3-25 (148)
27 1gk6_A Vimentin; intermediate 28.8 74 0.0025 20.6 4.0 22 81-102 4-25 (59)
28 1dh3_A Transcription factor CR 28.7 1.2E+02 0.004 19.4 5.1 28 78-105 23-50 (55)
29 3u1c_A Tropomyosin alpha-1 cha 27.6 88 0.003 22.1 4.5 27 77-103 44-70 (101)
30 1x8y_A Lamin A/C; structural p 27.4 85 0.0029 21.6 4.3 38 58-102 16-53 (86)
31 3azd_A Short alpha-tropomyosin 26.8 30 0.001 20.9 1.6 28 78-105 5-32 (37)
32 2wt7_A Proto-oncogene protein 26.1 1.1E+02 0.0039 19.7 4.5 26 79-104 25-50 (63)
33 1gk4_A Vimentin; intermediate 25.6 97 0.0033 21.1 4.3 40 56-102 12-51 (84)
34 2k48_A Nucleoprotein; viral pr 25.5 79 0.0027 23.6 4.0 22 77-98 82-103 (107)
35 1buu_A Protein (mannose-bindin 25.5 58 0.002 23.7 3.3 21 78-98 24-44 (168)
36 2ic6_A Nucleocapsid protein; h 25.3 86 0.0029 22.1 4.0 22 77-98 52-73 (78)
37 3kqg_A Langerin, C-type lectin 24.7 1.2E+02 0.0041 21.9 4.9 26 76-101 15-40 (182)
38 3i00_A HIP-I, huntingtin-inter 24.7 75 0.0026 23.6 3.8 22 78-99 41-62 (120)
39 1jcd_A Major outer membrane li 24.5 1.3E+02 0.0045 19.4 4.5 20 80-99 14-33 (52)
40 1avy_A Fibritin, gpwac M; bact 24.4 1.8E+02 0.0063 20.3 5.6 32 79-110 17-48 (74)
41 2lw1_A ABC transporter ATP-bin 24.1 1.1E+02 0.0037 20.9 4.3 28 80-107 18-45 (89)
42 2k48_A Nucleoprotein; viral pr 23.5 1.4E+02 0.0048 22.2 5.0 30 76-105 34-63 (107)
43 3iqt_A Signal transduction his 23.4 2.1E+02 0.0071 20.5 6.6 59 33-93 60-118 (123)
44 2ic9_A Nucleocapsid protein; h 22.6 99 0.0034 22.6 4.0 23 77-99 52-74 (96)
45 2xv5_A Lamin-A/C; structural p 22.3 1.3E+02 0.0043 20.6 4.3 22 80-101 8-29 (74)
46 2yny_A General control protein 22.1 1.4E+02 0.0048 22.1 4.8 28 77-104 76-103 (106)
47 3trt_A Vimentin; cytoskeleton, 22.0 83 0.0029 20.7 3.3 17 79-95 58-74 (77)
48 3viq_B Mating-type switching p 21.6 1.6E+02 0.0054 21.0 4.8 28 80-107 4-31 (85)
49 3e98_A GAF domain of unknown f 21.3 76 0.0026 25.8 3.5 32 66-100 57-88 (252)
50 4emc_A Monopolin complex subun 21.2 1.2E+02 0.0042 24.5 4.7 19 83-101 40-58 (190)
51 2wt7_B Transcription factor MA 21.0 1.4E+02 0.0047 21.4 4.4 52 52-103 28-81 (90)
52 1vcs_A Vesicle transport throu 20.7 1.5E+02 0.005 20.9 4.5 29 80-108 70-98 (102)
53 3viq_B Mating-type switching p 20.5 63 0.0022 23.0 2.5 24 77-100 8-31 (85)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=83.07 E-value=2 Score=25.85 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 77 GAISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
|.|..|.++|..|+.|++..+-||+.+.
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999988754
No 2
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=73.18 E-value=8 Score=24.92 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038565 77 GAISYLQNQVSQLQMQLAVAQ 97 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q 97 (163)
+.|..|+.+|..|+..|..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 677788888888888776544
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=63.00 E-value=12 Score=25.44 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 038565 76 VGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ 107 (163)
Q Consensus 76 vG~I~~Lq~qi~~lq~eL~~~q~el~~~~~q~ 107 (163)
+-.|..|+.++..++.++...+.+...++.+-
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999988887776554
No 4
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=57.40 E-value=18 Score=24.75 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 76 VGAISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 76 vG~I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
+-.|..|+.++..|+.|...++.++...+
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56788999999999999988888776543
No 5
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=53.03 E-value=13 Score=23.57 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 76 VGAISYLQNQVSQLQMQLAVAQAEIL 101 (163)
Q Consensus 76 vG~I~~Lq~qi~~lq~eL~~~q~el~ 101 (163)
-+.|..|+.+|..|+.+|+.++..|.
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688899999999999988877653
No 6
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=50.54 E-value=27 Score=25.98 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=17.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 74 GCVGAISYLQNQVSQLQMQLAVAQAEILC 102 (163)
Q Consensus 74 GcvG~I~~Lq~qi~~lq~eL~~~q~el~~ 102 (163)
|..|.+..|+.++...+.+++..++++..
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~e 29 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQ 29 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666555555443
No 7
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=49.64 E-value=27 Score=20.96 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 77 GAISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
|.+..+.+++..++.||+..+-||+.+.
T Consensus 2 gelaaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888888888765
No 8
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=48.29 E-value=69 Score=22.84 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=42.1
Q ss_pred HHHHHHHhhhCCCCCCCccchHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 33 QKFAMVHKVFGASNELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQA 98 (163)
Q Consensus 33 ~~F~~vhkvFG~sN~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~ 98 (163)
.-...+||+-|++..+-...= ...+...|..+|..+|+-..-..+..|..+|..+..++....+
T Consensus 51 ~l~~~aHkLkGaa~~~Ga~~L--~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~ 114 (119)
T 3myf_A 51 TMLSTIHKLHGASCYCGVPTT--QRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLS 114 (119)
T ss_dssp HHHHHHHHHHHHHTTTTCHHH--HHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999974432121 2223356777888888877777778888777777666655443
No 9
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=48.17 E-value=29 Score=24.35 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILC 102 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~ 102 (163)
.+..|++||+.++.|++.++-++..
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~ 45 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQE 45 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4567788888888877666655543
No 10
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=48.16 E-value=25 Score=22.36 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 038565 81 YLQNQVSQLQMQLAVAQAEILCIQMQQ 107 (163)
Q Consensus 81 ~Lq~qi~~lq~eL~~~q~el~~~~~q~ 107 (163)
.|-++|..+-.|++.+.++|..+|..+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788888888888888888877543
No 11
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=47.00 E-value=25 Score=20.33 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCI 103 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~ 103 (163)
|..|.++-..|+.|++...-||+.+
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5678888888999998888888764
No 12
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=43.35 E-value=41 Score=21.63 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
.|.+|+..|++|+.+|...+.+...++.
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~ 40 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISE 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5789999999999999998887776654
No 13
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=42.00 E-value=25 Score=23.70 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038565 76 VGAISYLQNQVSQLQMQLAVAQA 98 (163)
Q Consensus 76 vG~I~~Lq~qi~~lq~eL~~~q~ 98 (163)
+-.|..|+.++..|+.+++.++.
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677777777777777766554
No 14
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=39.18 E-value=96 Score=22.78 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=36.5
Q ss_pred HHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 57 VSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 57 ~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
...++.+......-|..--...|..|+.++.+++.|++.++.+++...
T Consensus 12 ~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 12 MERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666655567778889999999999999999998887765
No 15
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=36.75 E-value=66 Score=21.17 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038565 77 GAISYLQNQVSQLQMQLAVAQAEILCIQMQ 106 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q~el~~~~~q 106 (163)
..+..|+.++..|+.+-..+.+++..++.+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999988888888888877653
No 16
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=34.86 E-value=17 Score=26.20 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILC 102 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~ 102 (163)
|-.||.+|.+|+.+++.++++|..
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999888753
No 17
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=34.47 E-value=57 Score=22.68 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
.|..|+.+|.+...++...|.+|-.+|
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355555555555555555555554443
No 18
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=33.92 E-value=75 Score=21.74 Aligned_cols=30 Identities=17% Similarity=0.036 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 76 VGAISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 76 vG~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
+-.|..|+.+...++.|....+.+....+.
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999998888888888777665543
No 19
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=33.45 E-value=47 Score=23.49 Aligned_cols=23 Identities=0% Similarity=0.242 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038565 82 LQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 82 Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
|.++|..|+.++..++.+|..++
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~ 24 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTN 24 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444333
No 20
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=32.78 E-value=1e+02 Score=20.09 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Q 038565 82 LQNQVSQLQMQLAVAQAEILCIQMQQ 107 (163)
Q Consensus 82 Lq~qi~~lq~eL~~~q~el~~~~~q~ 107 (163)
-|..|=..+.||+.|+..|+.++.++
T Consensus 13 Aqe~iLr~ErELEeAr~~La~iR~~k 38 (50)
T 2qdq_A 13 AQEEMLRKERELEEARKKLAQIRQQQ 38 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777889999999999988765
No 21
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=32.41 E-value=62 Score=25.87 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=37.4
Q ss_pred CccchHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 49 PVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 49 p~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
+++.|.++++-|+=.| ...|..||.+|+.|+.+|...+.+-..++
T Consensus 118 ~a~~paE~ireli~~A-----------ertV~kLqkeiD~LEDeL~~eKek~k~i~ 162 (175)
T 3mud_A 118 KVENPAEVIRELICYC-----------LDTTAKNEKSIDDLEEKVAHAKEENLNMH 162 (175)
T ss_dssp ECSCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888999888765 46789999999999999999888876665
No 22
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=31.77 E-value=71 Score=21.62 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 77 GAISYLQNQVSQLQMQLAVAQAEILCI 103 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q~el~~~ 103 (163)
.-|..|+..|..++.+|..++..+...
T Consensus 41 ~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 41 DELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888887777666543
No 23
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.75 E-value=83 Score=20.19 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
+-.|+.++..|+.+++.+++++...+.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777766666665544
No 24
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=31.27 E-value=68 Score=21.91 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILCIQMQQ 107 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~~~~q~ 107 (163)
.|..|+..++.-..++..++.+|..+++--
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356667777777777777777776666543
No 25
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=30.21 E-value=60 Score=23.32 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
..+|+.++..++.|+..++.+|..++.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 357899999999999999999888876
No 26
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=28.86 E-value=43 Score=23.44 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEI 100 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el 100 (163)
++-.|+++|..|+.+|..++..+
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~ 25 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVL 25 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888777
No 27
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=28.80 E-value=74 Score=20.56 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038565 81 YLQNQVSQLQMQLAVAQAEILC 102 (163)
Q Consensus 81 ~Lq~qi~~lq~eL~~~q~el~~ 102 (163)
.+|..|..++++|..+++++..
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~ 25 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVAR 25 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666553
No 28
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=28.74 E-value=1.2e+02 Score=19.42 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
.|..|+.++..|+.|-..++.++..++.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888776654
No 29
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.56 E-value=88 Score=22.13 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 77 GAISYLQNQVSQLQMQLAVAQAEILCI 103 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q~el~~~ 103 (163)
.-|..|+.+|..++.+|..++..|...
T Consensus 44 ~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 44 DDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888777766543
No 30
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=27.40 E-value=85 Score=21.63 Aligned_cols=38 Identities=5% Similarity=0.048 Sum_probs=22.4
Q ss_pred HHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 58 SSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILC 102 (163)
Q Consensus 58 ~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~ 102 (163)
..-+-|+..|.. .-+..++..|..++.+|..+++++..
T Consensus 16 e~~l~e~E~~~~-------~~l~~~q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 16 EAKLRDLEDSLA-------RERDTSRRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555432 24566667777777777777766654
No 31
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=26.81 E-value=30 Score=20.86 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 78 AISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
.|..++.+|..++.|+..++.++...+.
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888877777666543
No 32
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.09 E-value=1.1e+02 Score=19.73 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
|..|+.++..|+.+-...+.+|..++
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666655555555555554433
No 33
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=25.65 E-value=97 Score=21.15 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=22.2
Q ss_pred HHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 56 AVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILC 102 (163)
Q Consensus 56 a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~ 102 (163)
....-+-|+..|... .+..++..|..++.+|..+++++..
T Consensus 12 sLE~~l~e~e~~~~~-------~~~~~q~~i~~lE~eL~~~r~e~~~ 51 (84)
T 1gk4_A 12 SLERQMREMEENFAV-------EAANYQDTIGRLQDEIQNMKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566665443 3455666666666666666666543
No 34
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=25.54 E-value=79 Score=23.60 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038565 77 GAISYLQNQVSQLQMQLAVAQA 98 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q~ 98 (163)
++|+.||.+|.+|+.+|+.+.+
T Consensus 82 ~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888887665
No 35
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=25.52 E-value=58 Score=23.74 Aligned_cols=21 Identities=10% Similarity=0.387 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038565 78 AISYLQNQVSQLQMQLAVAQA 98 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~ 98 (163)
.|..|+.+|..|+.+|..++.
T Consensus 24 ~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 24 KLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 355555555555555555443
No 36
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=25.30 E-value=86 Score=22.10 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038565 77 GAISYLQNQVSQLQMQLAVAQA 98 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q~ 98 (163)
+.|+.|+.+|.+|+.+|+.+.+
T Consensus 52 ~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 52 AAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6788889999999888887665
No 37
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=24.73 E-value=1.2e+02 Score=21.92 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 76 VGAISYLQNQVSQLQMQLAVAQAEIL 101 (163)
Q Consensus 76 vG~I~~Lq~qi~~lq~eL~~~q~el~ 101 (163)
...+..|+.+|+.|+.+|...+..+.
T Consensus 15 ~~~~~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 15 LEKASALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888877776554
No 38
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=24.70 E-value=75 Score=23.63 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038565 78 AISYLQNQVSQLQMQLAVAQAE 99 (163)
Q Consensus 78 ~I~~Lq~qi~~lq~eL~~~q~e 99 (163)
+|..|+.+|..|++||+..+.+
T Consensus 41 ~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 41 VVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 39
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.47 E-value=1.3e+02 Score=19.43 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038565 80 SYLQNQVSQLQMQLAVAQAE 99 (163)
Q Consensus 80 ~~Lq~qi~~lq~eL~~~q~e 99 (163)
..|..+|.+|+.+...++.+
T Consensus 14 ~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 14 QTANAKADQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 40
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=24.45 E-value=1.8e+02 Score=20.28 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQMQQDPP 110 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~~q~~~~ 110 (163)
|..+..++..++..|..++.++..++++..++
T Consensus 17 iaa~~~ev~t~~~~l~~~e~~vqaL~~ag~ip 48 (74)
T 1avy_A 17 IASVRQEVNTAKGNISSLQGDVQALQEAGYIP 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hhhhheeeccccchhhhhhhhhHHHHhcCCCC
Confidence 45677788888888888888888888865554
No 41
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.07 E-value=1.1e+02 Score=20.91 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 038565 80 SYLQNQVSQLQMQLAVAQAEILCIQMQQ 107 (163)
Q Consensus 80 ~~Lq~qi~~lq~eL~~~q~el~~~~~q~ 107 (163)
...|.++..|..+|+.+.++|..++.+-
T Consensus 18 ykeqrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 18 YKLQRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888888888777544
No 42
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=23.47 E-value=1.4e+02 Score=22.24 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 76 VGAISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 76 vG~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
.+-|-.||.+|...+.||..++.+|..-..
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~ 63 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEK 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999998876443
No 43
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=23.41 E-value=2.1e+02 Score=20.52 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=35.3
Q ss_pred HHHHHHHhhhCCCCCCCccchHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHH
Q 038565 33 QKFAMVHKVFGASNELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQL 93 (163)
Q Consensus 33 ~~F~~vhkvFG~sN~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL 93 (163)
.-...+||+-|.+..+-... -..-+...|..+|..+|+...-..+..|..++..+..+.
T Consensus 60 ~l~~~aHkLkGaa~~~Ga~~--L~~~c~~LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~ 118 (123)
T 3iqt_A 60 GLVDLIHKLHGSCGYSGVPR--MKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREA 118 (123)
T ss_dssp THHHHHHHHHHHHTTSCCHH--HHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999987443212 122334568888888887655555555555555544433
No 44
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=22.61 E-value=99 Score=22.61 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038565 77 GAISYLQNQVSQLQMQLAVAQAE 99 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q~e 99 (163)
++|+.||.+|.+|+.+|+.+.+.
T Consensus 52 ~~V~~lq~Ki~elkr~lAd~v~~ 74 (96)
T 2ic9_A 52 AAVSALETKLGELKRELADLIAA 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 67889999999999999887763
No 45
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=22.34 E-value=1.3e+02 Score=20.60 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038565 80 SYLQNQVSQLQMQLAVAQAEIL 101 (163)
Q Consensus 80 ~~Lq~qi~~lq~eL~~~q~el~ 101 (163)
..++..|..++.+|..+++++.
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~ 29 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQ 29 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544
No 46
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=22.09 E-value=1.4e+02 Score=22.09 Aligned_cols=28 Identities=11% Similarity=0.291 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 77 GAISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
+.|..+..+|..+..++..++.||+++.
T Consensus 76 ~svt~i~~~I~~lt~~i~~~~~~i~~~~ 103 (106)
T 2yny_A 76 TSMKQIEDKIEEILSKIYHIENEIARIK 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888765
No 47
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.99 E-value=83 Score=20.67 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038565 79 ISYLQNQVSQLQMQLAV 95 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~ 95 (163)
|..|..+|+.|+.||..
T Consensus 58 i~elrr~iq~L~~el~s 74 (77)
T 3trt_A 58 STEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444455555544443
No 48
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.57 E-value=1.6e+02 Score=20.96 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 038565 80 SYLQNQVSQLQMQLAVAQAEILCIQMQQ 107 (163)
Q Consensus 80 ~~Lq~qi~~lq~eL~~~q~el~~~~~q~ 107 (163)
..|+..|..|+++++.+..+|.....+-
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566667777777776666666665543
No 49
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=21.30 E-value=76 Score=25.77 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=13.0
Q ss_pred ccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 66 ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 100 (163)
Q Consensus 66 aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el 100 (163)
.++..|.. |+|+-..+|++.++.++...+.+|
T Consensus 57 L~lph~~~---~aVSL~erQ~~~LR~r~~~Le~~L 88 (252)
T 3e98_A 57 LRIPHQPG---DAVSLVERQVRLLRERNIEMRHRL 88 (252)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCC---CcccHHHHHHHHHHHHHHHHHHHH
Confidence 35666764 556666666666665555555544
No 50
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.23 E-value=1.2e+02 Score=24.51 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038565 83 QNQVSQLQMQLAVAQAEIL 101 (163)
Q Consensus 83 q~qi~~lq~eL~~~q~el~ 101 (163)
+.+|..|+.+|+.+++++.
T Consensus 40 ~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 40 ATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3344444444444444443
No 51
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=21.04 E-value=1.4e+02 Score=21.36 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHhcccc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 52 QRADAVSSLVYEANARVR--DPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI 103 (163)
Q Consensus 52 ~R~~a~~SLvYEA~aR~r--DPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~ 103 (163)
+|....+-=.|-+++|.+ +=+..--.-+..|+.+++.|..|++.+..++..+
T Consensus 28 q~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 28 QKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777888888865 2222223334445555555555555555554443
No 52
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=20.65 E-value=1.5e+02 Score=20.91 Aligned_cols=29 Identities=3% Similarity=0.162 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 038565 80 SYLQNQVSQLQMQLAVAQAEILCIQMQQD 108 (163)
Q Consensus 80 ~~Lq~qi~~lq~eL~~~q~el~~~~~q~~ 108 (163)
..++.+|...+.+|+.++.++..++.+.+
T Consensus 70 ~~~~~klr~Yk~dL~~lk~elk~~~~~~~ 98 (102)
T 1vcs_A 70 GMYSNRMRSYKQEMGKLETDFKRSRIASG 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 47899999999999999999888776643
No 53
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.47 E-value=63 Score=23.05 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 77 GAISYLQNQVSQLQMQLAVAQAEI 100 (163)
Q Consensus 77 G~I~~Lq~qi~~lq~eL~~~q~el 100 (163)
..|..|+.++.+++.++..+.+++
T Consensus 8 ~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 8 SRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357788888888888888877643
Done!