Query 038565
Match_columns 163
No_of_seqs 138 out of 314
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 21:30:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038565.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038565hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia4 a.7.1.1 (A:633-746) al 73.6 2.6 0.00019 27.6 4.8 52 54-105 14-65 (114)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 54.5 9.2 0.00067 23.3 4.3 25 76-100 32-56 (61)
3 d1am9a_ a.38.1.1 (A:) SREBP-1a 41.0 23 0.0017 22.2 4.9 30 75-104 48-77 (80)
4 d1v54j_ f.23.4.1 (J:) Mitochon 39.7 6.2 0.00045 25.0 1.6 45 34-83 4-48 (58)
5 d1nkpa_ a.38.1.1 (A:) Myc prot 34.6 33 0.0024 21.6 4.9 29 76-104 51-79 (88)
6 d1nkpb_ a.38.1.1 (B:) Max prot 33.6 33 0.0024 21.4 4.7 31 75-105 45-75 (83)
7 d1nlwa_ a.38.1.1 (A:) Mad prot 31.3 42 0.0031 20.7 4.9 29 76-104 46-74 (79)
8 d1zmec1 g.38.1.1 (C:31-66) PUT 28.3 14 0.001 20.5 1.8 16 4-19 1-16 (36)
9 d3coqa1 g.38.1.1 (A:8-48) Gal4 26.1 16 0.0011 20.5 1.7 15 5-19 2-16 (41)
10 d1pyia1 g.38.1.1 (A:30-71) PPR 23.9 21 0.0015 20.2 2.0 17 4-20 2-18 (42)
11 d1fxkc_ a.2.5.1 (C:) Prefoldin 23.0 67 0.0049 21.1 5.0 26 79-104 10-35 (133)
12 d1clda_ g.38.1.1 (A:) CD2-Lac9 21.5 20 0.0015 19.3 1.5 16 5-20 1-16 (33)
13 d1fxkc_ a.2.5.1 (C:) Prefoldin 21.2 63 0.0046 21.3 4.5 25 79-103 17-41 (133)
No 1
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.60 E-value=2.6 Score=27.60 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 54 ADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 54 ~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
.+-+.+=+-|+..-+.+|++|-.+.|..+..+...++.+|..-+..|..+..
T Consensus 14 a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~ 65 (114)
T d1hcia4 14 ANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEG 65 (114)
T ss_dssp HHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888988999999999999999999999999999999988887654
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.53 E-value=9.2 Score=23.27 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 76 VGAISYLQNQVSQLQMQLAVAQAEI 100 (163)
Q Consensus 76 vG~I~~Lq~qi~~lq~eL~~~q~el 100 (163)
+-.|..|+.++..|++|+...+.+.
T Consensus 32 i~YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 32 IDYIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999998888777654
No 3
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.03 E-value=23 Score=22.20 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 75 CVGAISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 75 cvG~I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
.+-.|..|+.+++.|..+....+.++...+
T Consensus 48 a~~yI~~L~~~~~~L~~e~~~lk~~~~~~~ 77 (80)
T d1am9a_ 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456788899999999998888887776543
No 4
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=39.65 E-value=6.2 Score=25.02 Aligned_cols=45 Identities=27% Similarity=0.442 Sum_probs=35.2
Q ss_pred HHHHHHhhhCCCCCCCccchHHHHHHHHHHHhccccCCCcccHHHHHHHH
Q 038565 34 KFAMVHKVFGASNELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQ 83 (163)
Q Consensus 34 ~F~~vhkvFG~sN~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq 83 (163)
+.....|+|.+.|.+|.+.+.-+++.|+|-+.+=.- .+|+++.+-
T Consensus 4 kv~e~Qk~FQ~~~g~PVhLKGG~~D~~LYr~Tm~L~-----~~G~~~s~~ 48 (58)
T d1v54j_ 4 RVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLC-----LGGTLYSLY 48 (58)
T ss_dssp CHHHHHHHHHCSSCCCTTTTTCHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred hhHHHHHHhcCCCCceEEecCCcchHHHHHHHHHHH-----HHHHHHHHH
Confidence 345678999999999999999999999999877543 455555543
No 5
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.60 E-value=33 Score=21.62 Aligned_cols=29 Identities=10% Similarity=0.027 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 76 VGAISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 76 vG~I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
+-.|..|+.++..+..++...+.+...++
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~ 79 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQLK 79 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45588888888888888887776665544
No 6
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.56 E-value=33 Score=21.40 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038565 75 CVGAISYLQNQVSQLQMQLAVAQAEILCIQM 105 (163)
Q Consensus 75 cvG~I~~Lq~qi~~lq~eL~~~q~el~~~~~ 105 (163)
.+-.|..|+.++..++.++...+.+....+.
T Consensus 45 A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~ 75 (83)
T d1nkpb_ 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888999999998888887777655544
No 7
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.30 E-value=42 Score=20.65 Aligned_cols=29 Identities=17% Similarity=0.056 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 76 VGAISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 76 vG~I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
+-.|..|+.++..+..++...+.+...++
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~L~ 74 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788899999998888888877766554
No 8
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.26 E-value=14 Score=20.53 Aligned_cols=16 Identities=31% Similarity=0.740 Sum_probs=11.5
Q ss_pred CCCChhhhhhhcCCCC
Q 038565 4 SSPCASCKLLRRRCAK 19 (163)
Q Consensus 4 ~~~CAACK~lRRrC~~ 19 (163)
+.+|-.||..+.||..
T Consensus 1 S~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 1 SVACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCCHHHHHHTCCCCC
T ss_pred CccHHHHHHhCCcCCC
Confidence 3567888888888864
No 9
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.10 E-value=16 Score=20.51 Aligned_cols=15 Identities=33% Similarity=0.999 Sum_probs=12.3
Q ss_pred CCChhhhhhhcCCCC
Q 038565 5 SPCASCKLLRRRCAK 19 (163)
Q Consensus 5 ~~CAACK~lRRrC~~ 19 (163)
.+|..||..+.+|..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 578889988888864
No 10
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.92 E-value=21 Score=20.17 Aligned_cols=17 Identities=24% Similarity=0.921 Sum_probs=13.4
Q ss_pred CCCChhhhhhhcCCCCC
Q 038565 4 SSPCASCKLLRRRCAKD 20 (163)
Q Consensus 4 ~~~CAACK~lRRrC~~~ 20 (163)
..+|..||..+.+|...
T Consensus 2 r~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 2 RTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cHHHHHHHHhCcCCCCc
Confidence 46789999999889753
No 11
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.98 E-value=67 Score=21.10 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCIQ 104 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~~ 104 (163)
+..|+.+++.++.++...+..+..+.
T Consensus 10 ~~~l~~~l~~l~~~i~~l~~~~~e~~ 35 (133)
T d1fxkc_ 10 LNIYQSQVELIQQQMEAVRATISELE 35 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666655555555444
No 12
>d1clda_ g.38.1.1 (A:) CD2-Lac9 {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=21.55 E-value=20 Score=19.30 Aligned_cols=16 Identities=25% Similarity=0.883 Sum_probs=13.1
Q ss_pred CCChhhhhhhcCCCCC
Q 038565 5 SPCASCKLLRRRCAKD 20 (163)
Q Consensus 5 ~~CAACK~lRRrC~~~ 20 (163)
.+|..|+..+.+|...
T Consensus 1 rAC~~Cr~rK~kCd~~ 16 (33)
T d1clda_ 1 QACDACRKKKWKCSKT 16 (33)
T ss_dssp CCCHHHHHSCCCCCCC
T ss_pred CChHHHHHhcCccCcc
Confidence 3799999999999753
No 13
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.19 E-value=63 Score=21.25 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565 79 ISYLQNQVSQLQMQLAVAQAEILCI 103 (163)
Q Consensus 79 I~~Lq~qi~~lq~eL~~~q~el~~~ 103 (163)
|..|++++..++..++....-+..+
T Consensus 17 l~~l~~~i~~l~~~~~e~~~~~~~L 41 (133)
T d1fxkc_ 17 VELIQQQMEAVRATISELEILEKTL 41 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666555554444433
Done!