BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038568
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 17/192 (8%)
Query: 135 KRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXX 194
KR+ H +V L + ++ + S D + ++W+ + + L ++ H
Sbjct: 166 KRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTL--IHHCEAVLHLRFNN 223
Query: 195 XXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC 254
T S D I VW+ + R+ LV HR+ VN + D + S
Sbjct: 224 GMMVTCSKDRSIAVWDMASPTDITLRR-------VLVGHRAAVNVVDF--DDKYIVSASG 274
Query: 255 DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRC 314
DR I VW F L GH + CL L+ SGS+D T+R+W C C
Sbjct: 275 DRTIKVWNTSTCE---FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD---IECGAC 328
Query: 315 MAFLEGHEKPVK 326
+ LEGHE+ V+
Sbjct: 329 LRVLEGHEELVR 340
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 220 RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHT 279
R RH L + ++ L D + SG D I +W++ + + L GHT
Sbjct: 117 RCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDK---NTLECKRILTGHT 173
Query: 280 GALLCLINVGDLLASGSADRTVRIW 304
G++LCL ++ +GS+D TVR+W
Sbjct: 174 GSVLCLQYDERVIITGSSDSTVRVW 198
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 84/235 (35%), Gaps = 48/235 (20%)
Query: 72 SGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVR 131
+GSV + + I T D +RVW + ++++TL
Sbjct: 173 TGSVLCLQYDERVIITGSSDSTVRVWDVNTG---EMLNTL-------------------- 209
Query: 132 RHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYK--CLESVNKAHEXXXXXX 189
+ H +AV L G+M + S DRS +W+ ++ L V H
Sbjct: 210 -------IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 262
Query: 190 XXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLL 249
+ S D I+VW S + V TL H+ + L L+
Sbjct: 263 DFDDKYIV-SASGDRTIKVWNTSTCE----------FVRTLNGHKRGIACLQYR--DRLV 309
Query: 250 FSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIW 304
SG D I +W+ E + E GH + C+ + SG+ D +++W
Sbjct: 310 VSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRFDNKRIVSGAYDGKIKVW 361
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 22/173 (12%)
Query: 155 MYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWERSVV 214
+ S S D++ K+WN N + L+++ + S D +++W R
Sbjct: 195 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--- 250
Query: 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA 274
L+ TL H S+VN +A DG + S D+ + +W R +
Sbjct: 251 --------NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ----LLQT 298
Query: 275 LWGHTGAL--LCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPV 325
L GH+ ++ + G +AS S D+TV++W R ++ + L GH V
Sbjct: 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----LQTLTGHSSSV 347
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 22/173 (12%)
Query: 155 MYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWERSVV 214
+ S S D++ K+WN N + L+++ + S D +++W R
Sbjct: 31 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--- 86
Query: 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA 274
L+ TL H S+V +A + DG + S D+ + +W R +
Sbjct: 87 --------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----LLQT 134
Query: 275 LWGHTGAL--LCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPV 325
L GH+ ++ + G +AS S D+TV++W R + + L GH V
Sbjct: 135 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----LLQTLTGHSSSV 183
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 22/173 (12%)
Query: 155 MYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWERSVV 214
+ S S D++ K+WN N + L+++ + S D +++W R
Sbjct: 400 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR--- 455
Query: 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA 274
L+ TL H S+V +A + DG + S D+ + +W R +
Sbjct: 456 --------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----LLQT 503
Query: 275 LWGHTGAL--LCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPV 325
L GH+ ++ + G +AS S D+TV++W R + + L GH V
Sbjct: 504 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----LLQTLTGHSSSV 552
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 22/173 (12%)
Query: 155 MYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWERSVV 214
+ S S D++ K+WN N + L+++ + S D +++W R
Sbjct: 113 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--- 168
Query: 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA 274
L+ TL H S+V +A + DG + S D+ + +W R +
Sbjct: 169 --------NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----LLQT 216
Query: 275 LWGHTGAL--LCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPV 325
L GH+ ++ + G +AS S D+TV++W R + + L GH V
Sbjct: 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----LLQTLTGHSSSV 265
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 18/152 (11%)
Query: 155 MYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWERSVV 214
+ S S D++ K+WN N + L+++ + S D +++W R
Sbjct: 441 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--- 496
Query: 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA 274
L+ TL H S+V +A + DG + S D+ + +W R +
Sbjct: 497 --------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----LLQT 544
Query: 275 LWGHTGAL--LCLINVGDLLASGSADRTVRIW 304
L GH+ ++ + G +AS S+D+TV++W
Sbjct: 545 LTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 22/174 (12%)
Query: 155 MYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWERSVV 214
+ S S D++ K+WN N + L+++ + S D +++W R
Sbjct: 318 IASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--- 373
Query: 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA 274
L+ TL H S+V +A + DG + S D+ + +W R +
Sbjct: 374 --------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----LLQT 421
Query: 275 LWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVK 326
L GH+ ++ + D +AS S D+TV++W R + + L GH V+
Sbjct: 422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ----LLQTLTGHSSSVR 471
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 230 LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGAL--LCLIN 287
L H S+V +A + DG + S D+ + +W R + L GH+ ++ +
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----LLQTLTGHSSSVWGVAFSP 67
Query: 288 VGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVK 326
G +AS S D+TV++W R + + L GH V+
Sbjct: 68 DGQTIASASDDKTVKLWNRNGQ----LLQTLTGHSSSVR 102
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 63 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 116
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ M + TL H V+A+ N DGSL
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKT----------GMCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D T+++W
Sbjct: 167 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 224 YSKG---KCLKTYTGHK 237
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ +
Sbjct: 43 SSSADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTL 92
Query: 259 VVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIWQRGKENCYRCMA 316
+W+ + + L GH+ + C +L+ SGS D +VRIW C+
Sbjct: 93 KIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---MCLK 146
Query: 317 FLEGHEKPV 325
L H PV
Sbjct: 147 TLPAHSDPV 155
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 221 KSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTG 280
K + L+ TL H V+++ + +G L S D+ I +W + F + + GH
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA---YDGKFEKTISGHKL 69
Query: 281 AL--LCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPV 325
+ + + +LL S S D+T++IW +C+ L+GH V
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYV 113
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 20/195 (10%)
Query: 136 RLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWN--ASNYKCLESVNKAHEXXXXXXX-XX 192
R W W+ L+ G DR +IW ++ C +++ H+
Sbjct: 18 RCWFLAWNPAGTLLASCGG------DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP 71
Query: 193 XXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG 252
+ S D +W+++ D VTTL H + V ++A G+LL +
Sbjct: 72 CGNYLASASFDATTCIWKKNQDDFE--------CVTTLEGHENEVKSVAWAPSGNLLATC 123
Query: 253 GCDRWIVVWERERDHRMVFAEALWGHTGALLCLI--NVGDLLASGSADRTVRIWQRGKEN 310
D+ + VWE + + L HT + ++ +LLAS S D TV+++ R +E+
Sbjct: 124 SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY-REEED 182
Query: 311 CYRCMAFLEGHEKPV 325
+ C A LEGHE V
Sbjct: 183 DWVCCATLEGHESTV 197
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 240 LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGAL--LCLINVGDLLASGSA 297
LA N G+LL S G DR I +W E D + + GH + + G+ LAS S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 298 DRTVRIWQRGKENCYRCMAFLEGHEKPVK 326
D T IW++ +++ + C+ LEGHE VK
Sbjct: 82 DATTCIWKKNQDD-FECVTTLEGHENEVK 109
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 202 ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261
D RIR+W E S H+ TV +A + G+ L S D +W
Sbjct: 36 GDRRIRIW-------GTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88
Query: 262 ERERDHRMVFAEALWGHTGAL--LCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLE 319
++ +D L GH + + G+LLA+ S D++V +W+ +E+ Y C++ L
Sbjct: 89 KKNQDD-FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN 147
Query: 320 GHEKPVK 326
H + VK
Sbjct: 148 SHTQDVK 154
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 72/182 (39%), Gaps = 24/182 (13%)
Query: 155 MYSVSWDRSFKIW--NASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWERS 212
+ S S+D + IW N +++C+ ++ T S D + VWE
Sbjct: 76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE-- 133
Query: 213 VVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFA 272
VD E + V+ L H V + + LL S D + ++ E D + A
Sbjct: 134 -VDEEDE----YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA 188
Query: 273 EALWGHTGAL--LCLINVGDLLASGSADRTVRIWQR------------GKENCYRCMAFL 318
L GH + L G LAS S DRTVRIW++ G + ++C+ L
Sbjct: 189 -TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247
Query: 319 EG 320
G
Sbjct: 248 SG 249
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 11/113 (9%)
Query: 154 LMYSVSWDRSFKIWNASN---YKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWE 210
L+ + S D+S +W Y+C+ +N + + S D ++++
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY- 177
Query: 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER 263
+E + + TL H STV +LA + G L S DR + +W +
Sbjct: 178 -------REEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 63 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 116
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ M + TL H V+A+ N DGSL
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKT----------GMCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D +++W
Sbjct: 167 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 224 YSKG---KCLKTYTGHK 237
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ +
Sbjct: 43 SSSADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTL 92
Query: 259 VVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIWQRGKENCYRCMA 316
+W+ + + L GH+ + C +L+ SGS D +VRIW C+
Sbjct: 93 KIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---MCLK 146
Query: 317 FLEGHEKPV 325
L H PV
Sbjct: 147 TLPAHSDPV 155
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 221 KSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTG 280
K + L+ TL H V+++ + +G L S D+ I +W + F + + GH
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA---YDGKFEKTISGHKL 69
Query: 281 AL--LCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPV 325
+ + + +LL S S D+T++IW +C+ L+GH V
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYV 113
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 66 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ + TL H V+A+ N DGSL
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D T+++W
Sbjct: 170 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 227 YSKG---KCLKTYTGHK 240
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ +
Sbjct: 46 SSSADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTL 95
Query: 259 VVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIW--QRGKENCYRC 314
+W+ + + L GH+ + C +L+ SGS D +VRIW + GK C
Sbjct: 96 KIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----C 147
Query: 315 MAFLEGHEKPV 325
+ L H PV
Sbjct: 148 LKTLPAHSDPV 158
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 56 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 109
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ + TL H V+A+ N DGSL
Sbjct: 110 NFNPQSNLIVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSL 159
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D T+++W
Sbjct: 160 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 217 YSKG---KCLKTYTGHK 230
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ +
Sbjct: 36 SSSADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTL 85
Query: 259 VVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIW--QRGKENCYRC 314
+W+ + + L GH+ + C +L+ SGS D +VRIW + GK C
Sbjct: 86 KIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----C 137
Query: 315 MAFLEGHEKPV 325
+ L H PV
Sbjct: 138 LKTLPAHSDPV 148
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 84 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 137
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ + TL H V+A+ N DGSL
Sbjct: 138 NFNPQSNLIVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSL 187
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D T+++W
Sbjct: 188 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 245 YSKG---KCLKTYTGHK 258
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ +
Sbjct: 64 SSSADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTL 113
Query: 259 VVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIW--QRGKENCYRC 314
+W+ + + L GH+ + C +L+ SGS D +VRIW + GK C
Sbjct: 114 KIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----C 165
Query: 315 MAFLEGHEKPV 325
+ L H PV
Sbjct: 166 LKTLPAHSDPV 176
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 66 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ + TL H V+A+ N DGSL
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D T+++W
Sbjct: 170 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 227 YSKG---KCLKTYTGHK 240
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ +
Sbjct: 46 SSSADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTL 95
Query: 259 VVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIW--QRGKENCYRC 314
+W+ + + L GH+ + C +L+ SGS D +VRIW + GK C
Sbjct: 96 KIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----C 147
Query: 315 MAFLEGHEKPV 325
+ L H PV
Sbjct: 148 LKTLPAHSDPV 158
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 82 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 135
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ + TL H V+A+ N DGSL
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSL 185
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D T+++W
Sbjct: 186 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 243 YSKG---KCLKTYTGHK 256
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ +
Sbjct: 62 SSSADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTL 111
Query: 259 VVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIW--QRGKENCYRC 314
+W+ + + L GH+ + C +L+ SGS D +VRIW + GK C
Sbjct: 112 KIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----C 163
Query: 315 MAFLEGHEKPV 325
+ L H PV
Sbjct: 164 LKTLPAHSDPV 174
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 60 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 113
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ + TL H V+A+ N DGSL
Sbjct: 114 NFNPQSNLIVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSL 163
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D T+++W
Sbjct: 164 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 221 YSKG---KCLKTYTGHK 234
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ +
Sbjct: 40 SSSADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTL 89
Query: 259 VVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIW--QRGKENCYRC 314
+W+ + + L GH+ + C +L+ SGS D +VRIW + GK C
Sbjct: 90 KIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----C 141
Query: 315 MAFLEGHEKPV 325
+ L H PV
Sbjct: 142 LKTLPAHSDPV 152
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 66 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ + TL H V+A+ N DGSL
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D T+++W
Sbjct: 170 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 227 YSKG---KCLKTYTGHK 240
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ +
Sbjct: 46 SSSADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTL 95
Query: 259 VVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIW--QRGKENCYRC 314
+W+ + + L GH+ + C +L+ SGS D +VRIW + GK C
Sbjct: 96 KIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----C 147
Query: 315 MAFLEGHEKPV 325
+ L H PV
Sbjct: 148 LKTLPAHSDPV 158
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 61 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 114
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ + TL H V+A+ N DGSL
Sbjct: 115 NFNPQSNLIVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSL 164
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D T+++W
Sbjct: 165 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 222 YSKG---KCLKTYTGHK 235
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ +
Sbjct: 41 SSSADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTL 90
Query: 259 VVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIW--QRGKENCYRC 314
+W+ + + L GH+ + C +L+ SGS D +VRIW + GK C
Sbjct: 91 KIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----C 142
Query: 315 MAFLEGHEKPV 325
+ L H PV
Sbjct: 143 LKTLPAHSDPV 153
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 65 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 118
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ V K K TL H V+A+ N DGSL
Sbjct: 119 NFNPQSNLIVSGSFDESVRIWD---VKTGKCLK-------TLPAHSDPVSAVHFNRDGSL 168
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D T+++W
Sbjct: 169 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 226 YSKG---KCLKTYTGHK 239
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ +
Sbjct: 45 SSSADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTL 94
Query: 259 VVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIW--QRGKENCYRC 314
+W+ + + L GH+ + C +L+ SGS D +VRIW + GK C
Sbjct: 95 KIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----C 146
Query: 315 MAFLEGHEKPV 325
+ L H PV
Sbjct: 147 LKTLPAHSDPV 157
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 60 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 113
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ + TL H V+A+ N DGSL
Sbjct: 114 NFNPQSNLIVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSL 163
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D T+++W
Sbjct: 164 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 221 YSKG---KCLKTYTGHK 234
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ +
Sbjct: 40 SSSADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTL 89
Query: 259 VVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIW--QRGKENCYRC 314
+W+ + + L GH+ + C +L+ SGS D +VRIW + GK C
Sbjct: 90 KIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----C 141
Query: 315 MAFLEGHEKPV 325
+ L H PV
Sbjct: 142 LKTLPAHSDPV 152
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 59 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 112
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ + TL H V+A+ N DGSL
Sbjct: 113 NFNPQSNLIVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSL 162
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D T+++W
Sbjct: 163 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 220 YSKG---KCLKTYTGHK 233
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ +
Sbjct: 39 SSSADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTL 88
Query: 259 VVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIW--QRGKENCYRC 314
+W+ + + L GH+ + C +L+ SGS D +VRIW + GK C
Sbjct: 89 KIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----C 140
Query: 315 MAFLEGHEKPV 325
+ L H PV
Sbjct: 141 LKTLPAHSDPV 151
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 77 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 130
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ + TL H V+A+ N DGSL
Sbjct: 131 NFNPQSNLIVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSL 180
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D T+++W
Sbjct: 181 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 237
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 238 YSKG---KCLKTYTGHK 251
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ +
Sbjct: 57 SSSADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTL 106
Query: 259 VVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIW--QRGKENCYRC 314
+W+ + + L GH+ + C +L+ SGS D +VRIW + GK C
Sbjct: 107 KIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----C 158
Query: 315 MAFLEGHEKPV 325
+ L H PV
Sbjct: 159 LKTLPAHSDPV 169
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 63 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 116
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ + TL H V+A+ N DGSL
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D T+++W
Sbjct: 167 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 224 YSKG---KCLKTYTGHK 237
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ +
Sbjct: 43 SSSADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTL 92
Query: 259 VVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIW--QRGKENCYRC 314
+W+ + + L GH+ + C +L+ SGS D +VRIW + GK C
Sbjct: 93 KIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----C 144
Query: 315 MAFLEGHEKPV 325
+ L H PV
Sbjct: 145 LKTLPAHSDPV 155
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 63 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 116
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ + TL H V+A+ N DGSL
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D T+++W
Sbjct: 167 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 224 YSKG---KCLKTYTGHK 237
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ +
Sbjct: 43 SSSADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTL 92
Query: 259 VVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIW--QRGKENCYRC 314
+W+ + + L GH+ + C +L+ SGS D +VRIW + GK C
Sbjct: 93 KIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----C 144
Query: 315 MAFLEGHEKPV 325
+ L H PV
Sbjct: 145 LKTLPAHSDPV 155
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXX 188
T+ HK + W + S+L+V S S D++ KIW+ S+ KCL+++
Sbjct: 63 TISGHKLGISDVAWSSDSNLLV------SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 116
Query: 189 XXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+GS D +R+W+ + TL H V+A+ N DGSL
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGSADRTVRIWQ 305
+ S D +W+ + + L + + G + + + D T+++W
Sbjct: 167 IVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 306 RGKENCYRCMAFLEGHE 322
K +C+ GH+
Sbjct: 224 YSKG---KCLKTYTGHK 237
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 22/129 (17%)
Query: 201 SADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVV 260
SAD I++W D E+ T+ H+ ++ +A + D +LL S D+ + +
Sbjct: 45 SADKLIKIW--GAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASDDKTLKI 94
Query: 261 WERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIW--QRGKENCYRCMA 316
W+ + + L GH+ + C +L+ SGS D +VRIW + GK C+
Sbjct: 95 WDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----CLK 146
Query: 317 FLEGHEKPV 325
L H PV
Sbjct: 147 TLPAHSDPV 155
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 34/203 (16%)
Query: 141 HWDAVSDLVVKQG--LMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXY 198
H D+V D+ L+ S S D + K+W+ ++C+ +++
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ S D I++WE V T HR V + N DG+L+ S D+ +
Sbjct: 209 SASRDKTIKMWEVQT----------GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258
Query: 259 VVW--------ERERDHRMVFAEALWGHTGALLCLINV-----------GDLLASGSADR 299
VW R+HR V W + + G L SGS D+
Sbjct: 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 300 TVRIWQRGKENCYRCMAFLEGHE 322
T+++W + C+ L GH+
Sbjct: 319 TIKMWDV---STGMCLMTLVGHD 338
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 230 LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGAL--LCLIN 287
L HRS V + + S++ S D I VW+ E F L GHT ++ + +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---FERTLKGHTDSVQDISFDH 160
Query: 288 VGDLLASGSADRTVRIWQRGKENCYRCM 315
G LLAS SAD T+++W C R M
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTM 188
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+GS D I++W+ S M + TLV H + V + + G + S D+ +
Sbjct: 313 SGSRDKTIKMWDVST----------GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 259 VVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQ 305
VW+ + M A H L + +GS D+TV++W+
Sbjct: 363 RVWDYKNKRCMKTLNAH-EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 65/160 (40%), Gaps = 15/160 (9%)
Query: 154 LMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWERSV 213
+M S S D + K+W+ ++ + + SAD I++W+
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAE 273
+ + T+ H V+++++ +G + S D+ I +WE + + +
Sbjct: 182 FE----------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY---CVK 228
Query: 274 ALWGHTG--ALLCLINVGDLLASGSADRTVRIWQRGKENC 311
GH ++ G L+AS S D+TVR+W + C
Sbjct: 229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 154 LMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWE 210
+ S + D++ ++W+ N +C++++N TGS D ++VWE
Sbjct: 352 FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 20/187 (10%)
Query: 136 RLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXX 195
R + H V ++ ++ S S DR+ K+WNA +C+ ++
Sbjct: 153 RTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTL--YGHTSTVRCMHLHEK 210
Query: 196 XXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD 255
+GS D +RVW+ + L+ H + V + DG + SG D
Sbjct: 211 RVVSGSRDATLRVWDIET----------GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYD 258
Query: 256 RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCM 315
+ VW+ E + L GHT + L G + SGS D ++R+W N C+
Sbjct: 259 FMVKVWDPETE---TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN---CI 312
Query: 316 AFLEGHE 322
L GH+
Sbjct: 313 HTLTGHQ 319
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 20/171 (11%)
Query: 155 MYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWERSVV 214
+ S S D + K+W+A KCL ++ +GS D ++VW
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTL--VGHTGGVWSSQMRDNIIISGSTDRTLKVW----- 184
Query: 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA 274
N E + TL H STV + L+ + SG D + VW+ E +
Sbjct: 185 --NAETGE---CIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCL---HV 234
Query: 275 LWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPV 325
L GH A+ C+ G + SG+ D V++W E C+ L+GH V
Sbjct: 235 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET---CLHTLQGHTNRV 282
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 14/165 (8%)
Query: 155 MYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWERSVV 214
+ S ++D K+W+ CL ++ + H +GS D IRVW+
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTL-QGH-TNRVYSLQFDGIHVVSGSLDTSIRVWDVETG 309
Query: 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA 274
+ + TL H+S + + L + +L SG D + +W+ + + +
Sbjct: 310 N----------CIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQG 357
Query: 275 LWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLE 319
H A+ CL + + + S D TV++W R + LE
Sbjct: 358 PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 402
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+GS D ++VW S V R TLV H V + + + ++ SG DR +
Sbjct: 134 SGSDDNTLKVW--SAVTGKCLR--------TLVGHTGGVWSSQMRDN--IIISGSTDRTL 181
Query: 259 VVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFL 318
VW E + L+GHT + C+ + SGS D T+R+W +C+ L
Sbjct: 182 KVWNAETGECI---HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI---ETGQCLHVL 235
Query: 319 EGHEKPVK 326
GH V+
Sbjct: 236 MGHVAAVR 243
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 246 GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQ 305
G+ + SG D + VW + L GHTG + +++ SGS DRT+++W
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCL---RTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWN 185
Query: 306 RGKENCYRCMAFLEGHEKPVK 326
C+ L GH V+
Sbjct: 186 ---AETGECIHTLYGHTSTVR 203
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 237 VNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL--INVGDLLAS 294
+ ++ + DG L +G DR I +W+ E + ++V L GH + L GD L S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIE-NRKIVMI--LQGHEQDIYSLDYFPSGDKLVS 182
Query: 295 GSADRTVRIWQRGKENCYRCMAFLEG 320
GS DRTVRIW C ++ +G
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDG 208
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 138/332 (41%), Gaps = 56/332 (16%)
Query: 28 HHMIISCLAVHNSLLY-AASLNEINVFDLISDYSHVDTFSND---------LSSSGS--- 74
H ++ C+ N Y A N+ +SD S V S+D L++S S
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 75 ---VKSITFHITKIF--TAHQDCKIRVWKITASR-------QHQLVSTL---PTVKDRLI 119
++S+ F F T +D IR+W I + Q + +L P+ D+L+
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS-GDKLV 181
Query: 120 RSVLPNNYVTV---RRHKKRLWLEHWDAVSDLVVKQG---LMYSVSWDRSFKIWNASNYK 173
S + V + R + L L D V+ + V G + + S DR+ ++W++
Sbjct: 182 -SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Query: 174 CLESVNKAHEXXX-------XXXXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRH-- 224
+E ++ +E +GS D +++W ++ + K+ +
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLC 284
T + H+ V ++A + + SG DR ++ W+++ + ++ L GH +++
Sbjct: 301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM---LQGHRNSVIS 357
Query: 285 LI-----NVG---DLLASGSADRTVRIWQRGK 308
+ ++G ++ A+GS D RIW+ K
Sbjct: 358 VAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 25/139 (17%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
GS D + +W + + + +R L+ + H + V +A + DG L + D+ +
Sbjct: 75 AGSFDSTVSIWAK---EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131
Query: 259 VVWERE------------RDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQR 306
+WE + ++H +W + ALL AS S D TVRIW +
Sbjct: 132 WIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALL---------ASSSYDDTVRIW-K 181
Query: 307 GKENCYRCMAFLEGHEKPV 325
++ + C+A L GHE V
Sbjct: 182 DYDDDWECVAVLNGHEGTV 200
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 233 HRSTVNALALNGDGSLLFSGGCDRWIVVWERE----RDHRMVFAEALWGHTGAL--LCLI 286
H+ + ++A SLL +G D + +W +E R M + GH + +
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS 116
Query: 287 NVGDLLASGSADRTVRIW---QRGKENCYRCMAFLEGHEKPVK 326
N G LA+ S D++V IW + G+E Y C++ L+ H + VK
Sbjct: 117 NDGYYLATCSRDKSVWIWETDESGEE--YECISVLQEHSQDVK 157
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 76/190 (40%), Gaps = 25/190 (13%)
Query: 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXY--TGSADGRIRVW- 209
G++ S S DR+ ++W+ C + Y TGS D + VW
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 210 ---ERSVVDHNKER---------KSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257
E SV DH +E + V L H ++V ++ G G+++ SG D
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNT 291
Query: 258 IVVWERERDHRMVFAEALWGHTGALLCLI--NVGDLLASGSADRTVRIWQRGKENCYRCM 315
++VW+ +M L GHT + I + S S D T+RIW EN M
Sbjct: 292 LIVWDVA---QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL--ENG-ELM 345
Query: 316 AFLEGHEKPV 325
L+GH V
Sbjct: 346 YTLQGHTALV 355
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 228 TTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN 287
TTL H ++V L + + + +G D+ I V++ F L GH G + L
Sbjct: 115 TTLRGHMTSV-ITCLQFEDNYVITGADDKMIRVYDSINKK---FLLQLSGHDGGVWALKY 170
Query: 288 V-GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVK 326
G +L SGS DRTVR+W K+ C C EGH V+
Sbjct: 171 AHGGILVSGSTDRTVRVWDI-KKGC--CTHVFEGHNSTVR 207
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 228 TTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN 287
TTL H ++V L + + + +G D+ I V++ F L GH G + L
Sbjct: 115 TTLRGHXTSV-ITCLQFEDNYVITGADDKXIRVYDSINKK---FLLQLSGHDGGVWALKY 170
Query: 288 V-GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVK 326
G +L SGS DRTVR+W K+ C C EGH V+
Sbjct: 171 AHGGILVSGSTDRTVRVWDI-KKGC--CTHVFEGHNSTVR 207
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 22/169 (13%)
Query: 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXY--TGSADGRIRVW- 209
G++ S S DR+ ++W+ C + Y TGS D + VW
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 210 ---ERSVVDHNKER---------KSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257
E SV DH +E + V L H ++V ++ G G+++ SG D
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS--GHGNIVVSGSYDNT 291
Query: 258 IVVWERERDHRMVFAEALWGHTGALLCLI--NVGDLLASGSADRTVRIW 304
++VW+ + + L GHT + I + S S D T+RIW
Sbjct: 292 LIVWDVAQXKCLYI---LSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 21/186 (11%)
Query: 126 NYVTVRRHKKRLWLEHWDAVSDLVVKQG--LMYSVSWDRSFKIWNASNYKCLESVNKAHE 183
N T++ + + H DAV Q + S D++ +++ A + L + +
Sbjct: 606 NKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED 665
Query: 184 XXXXXXXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN 243
T SAD ++++W+ + LV T +H VN
Sbjct: 666 EVLCCAFSSDDSYIATCSADKKVKIWDSAT----------GKLVHTYDEHSEQVNCCHFT 715
Query: 244 GDGS--LLFSGGCDRWIVVWE-RERDHRMVFAEALWGHTGALL-CLINVGD-LLASGSAD 298
+ LL +G D ++ +W+ +++ R ++GHT ++ C + D LLAS SAD
Sbjct: 716 NKSNHLLLATGSNDFFLKLWDLNQKECR----NTMFGHTNSVNHCRFSPDDELLASCSAD 771
Query: 299 RTVRIW 304
T+R+W
Sbjct: 772 GTLRLW 777
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 25/186 (13%)
Query: 123 LPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWN--ASNYKCLESVNK 180
LPNN V + + H +D + S S D ++WN +Y L+
Sbjct: 997 LPNNRVFSSGVGHKKAVRHIQFTAD----GKTLISSSEDSVIQVWNWQTGDYVFLQ---- 1048
Query: 181 AHEXXXXXXXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNAL 240
AH+ + S DG ++VW +V+ ER H+ TV +
Sbjct: 1049 AHQETVKDFRLLQDSRLLSWSFDGTVKVW--NVITGRIERD--------FTCHQGTVLSC 1098
Query: 241 ALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSAD 298
A++ D + S D+ +W + + L GH G + C G LLA+G +
Sbjct: 1099 AISSDATKFSSTSADKTAKIWSFDL---LSPLHELKGHNGCVRCSAFSLDGILLATGDDN 1155
Query: 299 RTVRIW 304
+RIW
Sbjct: 1156 GEIRIW 1161
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 54/139 (38%), Gaps = 36/139 (25%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLL---FSGGCD 255
+ S D I+VW D+ L H+ TV L D LL F G
Sbjct: 1027 SSSEDSVIQVWNWQTGDY-----------VFLQAHQETVKDFRLLQDSRLLSWSFDGTVK 1075
Query: 256 RWIVVWER-ERDHRMVFAEALWGHTGALL-CLINV-GDLLASGSADRTVRIWQ------- 305
W V+ R ERD H G +L C I+ +S SAD+T +IW
Sbjct: 1076 VWNVITGRIERDFTC--------HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1127
Query: 306 ---RGKENCYRCMAF-LEG 320
+G C RC AF L+G
Sbjct: 1128 HELKGHNGCVRCSAFSLDG 1146
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 21/186 (11%)
Query: 126 NYVTVRRHKKRLWLEHWDAVSDLVVKQG--LMYSVSWDRSFKIWNASNYKCLESVNKAHE 183
N T++ + + H DAV Q + S D++ +++ A + L + +
Sbjct: 599 NKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED 658
Query: 184 XXXXXXXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN 243
T SAD ++++W+ + LV T +H VN
Sbjct: 659 EVLCCAFSSDDSYIATCSADKKVKIWDSAT----------GKLVHTYDEHSEQVNCCHFT 708
Query: 244 GDGS--LLFSGGCDRWIVVWE-RERDHRMVFAEALWGHTGALL-CLINVGD-LLASGSAD 298
+ LL +G D ++ +W+ +++ R ++GHT ++ C + D LLAS SAD
Sbjct: 709 NKSNHLLLATGSNDFFLKLWDLNQKECR----NTMFGHTNSVNHCRFSPDDELLASCSAD 764
Query: 299 RTVRIW 304
T+R+W
Sbjct: 765 GTLRLW 770
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 25/186 (13%)
Query: 123 LPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWN--ASNYKCLESVNK 180
LPNN V + + H +D + S S D ++WN +Y L+
Sbjct: 990 LPNNRVFSSGVGHKKAVRHIQFTAD----GKTLISSSEDSVIQVWNWQTGDYVFLQ---- 1041
Query: 181 AHEXXXXXXXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNAL 240
AH+ + S DG ++VW +V+ ER H+ TV +
Sbjct: 1042 AHQETVKDFRLLQDSRLLSWSFDGTVKVW--NVITGRIERD--------FTCHQGTVLSC 1091
Query: 241 ALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSAD 298
A++ D + S D+ +W + + L GH G + C G LLA+G +
Sbjct: 1092 AISSDATKFSSTSADKTAKIWSFDL---LSPLHELKGHNGCVRCSAFSLDGILLATGDDN 1148
Query: 299 RTVRIW 304
+RIW
Sbjct: 1149 GEIRIW 1154
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 54/139 (38%), Gaps = 36/139 (25%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLL---FSGGCD 255
+ S D I+VW D+ L H+ TV L D LL F G
Sbjct: 1020 SSSEDSVIQVWNWQTGDY-----------VFLQAHQETVKDFRLLQDSRLLSWSFDGTVK 1068
Query: 256 RWIVVWER-ERDHRMVFAEALWGHTGALL-CLINV-GDLLASGSADRTVRIWQ------- 305
W V+ R ERD H G +L C I+ +S SAD+T +IW
Sbjct: 1069 VWNVITGRIERDFTC--------HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1120
Query: 306 ---RGKENCYRCMAF-LEG 320
+G C RC AF L+G
Sbjct: 1121 HELKGHNGCVRCSAFSLDG 1139
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 228 TTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER-ERDHRMVFAEALW---GHTGALL 283
+T +H V+++ N DGSL S G D IV++ + VF + H+G++
Sbjct: 184 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 243
Query: 284 CLI--NVGDLLASGSADRTVRIWQ 305
L G +AS SAD+T++IW
Sbjct: 244 GLTWSPDGTKIASASADKTIKIWN 267
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLI 286
V T+V H + + ++A + +G+ L + R ++ + + + + HT + C+
Sbjct: 485 VKTIV-HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS 543
Query: 287 NVGD--LLASGSADRTVRIWQRGKEN 310
D LA+GS D +V +W K +
Sbjct: 544 WSPDNVRLATGSLDNSVIVWNMNKPS 569
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 14/176 (7%)
Query: 145 VSDLVVKQGLMYSVS--WDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSA 202
VSD+ + ++VS WD S ++WN N +C + +G
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 203 DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE 262
D +RVW + + H + V+ ++ D ++ SGG D + VW+
Sbjct: 130 DNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSL-------DAPVIVSGGWDNLVKVWD 182
Query: 263 RERDHRMVFAEALWGHTGAL--LCLINVGDLLASGSADRTVRIWQRGKENCYRCMA 316
R+V L GHT + + + G L AS D R+W K MA
Sbjct: 183 LATG-RLV--TDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA 235
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 221 KSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTG 280
+ HM L H + + N +G LLFS D VW R+ L GHTG
Sbjct: 19 QGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL---GTLDGHTG 75
Query: 281 AL--LCLINVGDLLASGSADRTVRIWQRGKENC 311
+ + + +GSAD ++++W C
Sbjct: 76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC 108
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 200 GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259
GS D RIRV+ ++N K V H + ++A++ + SG D +
Sbjct: 73 GSDDFRIRVF-----NYNTGEK-----VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 260 VWERERDHRMVFAEALWGHTGALLCL-INVGD--LLASGSADRTVRIWQRGK 308
+W E + + + GH ++C+ N D ASG DRTV++W G+
Sbjct: 123 LWNWENNWAL--EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 200 GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259
GS D RIRV+ ++N K V H + ++A++ + SG D +
Sbjct: 73 GSDDFRIRVF-----NYNTGEK-----VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 260 VWERERDHRMVFAEALWGHTGALLCL-INVGD--LLASGSADRTVRIWQRGK 308
+W E + + + GH ++C+ N D ASG DRTV++W G+
Sbjct: 123 LWNWENNWAL--EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 200 GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259
GS D RIRV+ ++N K V H + ++A++ + SG D +
Sbjct: 73 GSDDFRIRVF-----NYNTGEK-----VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 260 VWERERDHRMVFAEALWGHTGALLCL-INVGD--LLASGSADRTVRIWQRGK 308
+W E + + + GH ++C+ N D ASG DRTV++W G+
Sbjct: 123 LWNWENNWAL--EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 17/126 (13%)
Query: 155 MYSVSWDRSFKIWNASNYKCLESVNKAHE------XXXXXXXXXXXXXXYTGSADGRIRV 208
+ S S DR+ K+WN +C ++++ E + S D ++V
Sbjct: 487 IVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 209 WERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHR 268
W S L +TL H V+ +A++ DGSL SGG D +++W+ +
Sbjct: 546 WNLS----------NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595
Query: 269 MVFAEA 274
+ EA
Sbjct: 596 LYSLEA 601
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+GS DG +R+W+ + + V H V ++A + D + S DR I
Sbjct: 447 SGSWDGELRLWDLAA----------GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI 496
Query: 259 VVWERERDHRMVFAEALWGHTGALLCL----INVGDLLASGSADRTVRIWQRGKENCYRC 314
+W + + +E GH + C+ + + S S D+TV++W NC +
Sbjct: 497 KLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL--SNC-KL 553
Query: 315 MAFLEGH 321
+ L GH
Sbjct: 554 RSTLAGH 560
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 10/125 (8%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
+ S D I +W+ + K+ K+ + L H V + L+ DG SG D +
Sbjct: 400 SASRDKSIILWKLT-----KDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454
Query: 259 VVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMA 316
+W+ V GHT +L + D + S S DRT+++W E Y
Sbjct: 455 RLWDLAAG---VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE 511
Query: 317 FLEGH 321
EGH
Sbjct: 512 GGEGH 516
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 152 QGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWE 210
Q + S SWD++ K+WN SN K ++ +G DG + +W+
Sbjct: 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 233 HRSTVNALALNGDGSLLFSGGCDRWIVVWE-RERDHRMVFAEALWGHTGAL--LCLINVG 289
H V +L+L D L SG CD +W+ RE R F GH + +C G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT----GHESDINAICFFPNG 238
Query: 290 DLLASGSADRTVRIWQ 305
+ A+GS D T R++
Sbjct: 239 NAFATGSDDATCRLFD 254
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 233 HRSTVNALALNGDGSLLFSGGCDRWIVVWE-RERDHRMVFAEALWGHTGAL--LCLINVG 289
H V +L+L D L SG CD +W+ RE R F GH + +C G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT----GHESDINAICFFPNG 238
Query: 290 DLLASGSADRTVRIWQ 305
+ A+GS D T R++
Sbjct: 239 NAFATGSDDATCRLFD 254
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 200 GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259
GS D RIRV+ ++N K V H + ++A++ + SG D +
Sbjct: 73 GSDDFRIRVF-----NYNTGEK-----VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 260 VWERERDHRMVFAEALWGHTGALLCL-INVGD--LLASGSADRTVRIWQRGK 308
+W E + + + GH ++C+ N D ASG DRTV++W G+
Sbjct: 123 LWNWENNWAL--EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 233 HRSTVNALALNGDGSLLFSGGCDRWIVVWE-RERDHRMVFAEALWGHTGAL--LCLINVG 289
H V +L+L D L SG CD +W+ RE R F GH + +C G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT----GHESDINAICFFPNG 238
Query: 290 DLLASGSADRTVRIWQ 305
+ A+GS D T R++
Sbjct: 239 NAFATGSDDATCRLFD 254
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 233 HRSTVNALALNGDGSLLFSGGCDRWIVVWE-RERDHRMVFAEALWGHTGAL--LCLINVG 289
H V +L+L D L SG CD +W+ RE R F GH + +C G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT----GHESDINAICFFPNG 238
Query: 290 DLLASGSADRTVRIW 304
+ A+GS D T R++
Sbjct: 239 NAFATGSDDATCRLF 253
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 233 HRSTVNALALNGDGSLLFSGGCDRWIVVWE-RERDHRMVFAEALWGHTGAL--LCLINVG 289
H V +L+L D L SG CD +W+ RE R F GH + +C G
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT----GHESDINAICFFPNG 249
Query: 290 DLLASGSADRTVRIW 304
+ A+GS D T R++
Sbjct: 250 NAFATGSDDATCRLF 264
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 239 ALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGS 296
ALA++ D + FS D I VW+ H GHT C + N G L +G
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDL---HNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202
Query: 297 ADRTVRIW 304
D TVR W
Sbjct: 203 LDNTVRSW 210
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 18/119 (15%)
Query: 198 YTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257
++ +DG I VW+ HN+ LV H + + ++ DG+ L++GG D
Sbjct: 157 FSCCSDGNIAVWDL----HNQ------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206
Query: 258 IVVWERERDHRMV---FAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYR 313
+ W+ ++ F ++ L G+ LA G V + K + Y+
Sbjct: 207 VRSWDLREGRQLQQHDFTSQIFS-----LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 203 DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE 262
DGR++VW + + T H S VN L+++ +G + +GG D+ +++W+
Sbjct: 193 DGRLKVW-----------NTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 99/251 (39%), Gaps = 48/251 (19%)
Query: 83 TKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNN---------------- 126
+K+ + +D +R+W S+ Q + T+ + SV ++
Sbjct: 30 SKVASVSRDGTVRLW----SKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXING 85
Query: 127 ---YVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHE 183
+ T + H V L + G++ S SWD++ K+W + L +AH
Sbjct: 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGS---LVYNLQAHN 142
Query: 184 XXX--XXXXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALA 241
T SAD I++W+ ++K K+ + +V+H LA
Sbjct: 143 ASVWDAKVVSFSENKFLTASADKTIKLWQ-----NDKVIKTFSGIHNDVVRH------LA 191
Query: 242 LNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADR 299
+ DG + S D I + + + E GH + C L+ GD+++ G DR
Sbjct: 192 VVDDGHFI-SCSNDGLIKLVDXHTGDVLRTYE---GHESFVYCIKLLPNGDIVSCGE-DR 246
Query: 300 TVRIWQRGKEN 310
TVRIW KEN
Sbjct: 247 TVRIWS--KEN 255
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 19/159 (11%)
Query: 157 SVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWERSVVDH 216
S D++ +++ A + L + + T S D ++++W +
Sbjct: 638 SCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGE- 696
Query: 217 NKERKSRHMLVTTLVKHRSTVNALALNGDGS--LLFSGGCDRWIVVWE-RERDHRMVFAE 273
LV T +H VN LL +G D ++ +W+ +++ R
Sbjct: 697 ---------LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECR----N 743
Query: 274 ALWGHTGALL-CLINVGD-LLASGSADRTVRIWQRGKEN 310
++GHT ++ C + D LLAS SAD T+++W N
Sbjct: 744 TMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 24/104 (23%)
Query: 230 LVKHRSTVNALALNGDGSLL---FSGGCDRW-IVVWERERDHRMVFAEALWGHTGALL-C 284
L H+ TV L + LL F G W I+ +E+D H G +L C
Sbjct: 1046 LRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKD--------FVCHQGTVLSC 1097
Query: 285 LIN-VGDLLASGSADRTVRIWQ----------RGKENCYRCMAF 317
I+ +S SAD+T +IW RG C RC AF
Sbjct: 1098 DISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAF 1141
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 233 HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-- 290
H V + DG + S G D+ + V++ E +++ +A H +LC D
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKA---HEDEVLCCAFSTDDR 676
Query: 291 LLASGSADRTVRIW 304
+A+ S D+ V+IW
Sbjct: 677 FIATCSVDKKVKIW 690
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 21/150 (14%)
Query: 161 DRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWE----RSVVDH 216
D+ +W+ + +C+++ +GS D R+++ R V +
Sbjct: 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278
Query: 217 NKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALW 276
+KE +++ S+V+ + G LLF+G D I VW+ + R+ L+
Sbjct: 279 SKE---------SIIFGASSVD---FSLSGRLLFAGYNDYTINVWDVLKGSRVSI---LF 323
Query: 277 GHTG--ALLCLINVGDLLASGSADRTVRIW 304
GH + L + G SGS D T+R+W
Sbjct: 324 GHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALAL--NGDGSLLFSGGCDR 256
T S DG +W+ V+ + +S H H + V L L + G+ SGGCD+
Sbjct: 171 TASGDGTCALWD---VESGQLLQSFH-------GHGADVLCLDLAPSETGNTFVSGGCDK 220
Query: 257 WIVVWERERDHRMVFAEALWGHTGALLCL--INVGDLLASGSADRTVRIW 304
+VW+ R + V +A H + + GD ASGS D T R++
Sbjct: 221 KAMVWDM-RSGQCV--QAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 249 LFSGGCDRWIVVWERERDHRM-VFA-EALWGHTGALLCL-INV--GDLLASGSADRTVRI 303
L +G D+ V+W+ R+ +F E GHT +L L IN ++ SGS D TVR+
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 304 W 304
W
Sbjct: 233 W 233
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 199 TGSADGRIRVWER------SVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG 252
TGS DG R+++ V + +R + + T ++A + G LLF+G
Sbjct: 266 TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVT---------SVAFSISGRLLFAG 316
Query: 253 GCDRWIVVWERERDHRMVFAEALWG-HTGALLCL--INVGDLLASGSADRTVRIW 304
+ VW+ ++ L H G + CL + G L +GS D+ ++IW
Sbjct: 317 YSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER-ERDHRMVFA 272
+ H+ R + H V TL H V L DG L SGG D + VW + V
Sbjct: 131 IHHHDVRVAEHH-VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL 189
Query: 273 EALWGHTGALLCLINV---GDLLAS--GSADRTVRIWQRGKENC 311
+ H GA+ + ++LA+ G++DR +RIW C
Sbjct: 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 233
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER-ERDHRMVFA 272
+ H+ R + H V TL H V L DG L SGG D + VW + V
Sbjct: 211 IHHHDVRVAEHH-VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL 269
Query: 273 EALWGHTGALLCLINV---GDLLAS--GSADRTVRIW 304
+ H GA+ + ++LA+ G++DR +RIW
Sbjct: 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 28/137 (20%)
Query: 142 WDAVSDLVVKQGLMYSVSW---------------DRSFKIWNASNYKCLESVNKAHEXXX 186
W + QG + +V+W DR +IWN + CL +V+ AH
Sbjct: 266 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVC 324
Query: 187 XXXXXXXXXXXYTGS--ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244
+G A ++ +W+ + V L H S V +L ++
Sbjct: 325 SILWSPHYKELISGHGFAQNQLVIWKYPTMAK----------VAELKGHTSRVLSLTMSP 374
Query: 245 DGSLLFSGGCDRWIVVW 261
DG+ + S D + +W
Sbjct: 375 DGATVASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER-ERDHRMVFA 272
+ H+ R + H V TL H V L DG L SGG D + VW + V
Sbjct: 222 IHHHDVRVAEHH-VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL 280
Query: 273 EALWGHTGALLCLINV---GDLLAS--GSADRTVRIW 304
+ H GA+ + ++LA+ G++DR +RIW
Sbjct: 281 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 317
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 28/137 (20%)
Query: 142 WDAVSDLVVKQGLMYSVSW---------------DRSFKIWNASNYKCLESVNKAHEXXX 186
W + QG + +V+W DR +IWN + CL +V+ AH
Sbjct: 277 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVC 335
Query: 187 XXXXXXXXXXXYTGS--ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244
+G A ++ +W+ + V L H S V +L ++
Sbjct: 336 SILWSPHYKELISGHGFAQNQLVIWKYPTMAK----------VAELKGHTSRVLSLTMSP 385
Query: 245 DGSLLFSGGCDRWIVVW 261
DG+ + S D + +W
Sbjct: 386 DGATVASAAADETLRLW 402
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 247 SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL-INVGD--LLASGSADRTVRI 303
SL S D+ +++W+ ++ + + HT + CL N +LA+GSAD+TV +
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 304
Query: 304 W 304
W
Sbjct: 305 W 305
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 247 SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL-INVGD--LLASGSADRTVRI 303
SL S D+ +++W+ ++ + ++ HT + CL N +LA+GSAD+TV +
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300
Query: 304 W 304
W
Sbjct: 301 W 301
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 247 SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL-INVGD--LLASGSADRTVRI 303
SL S D+ +++W+ ++ + + HT + CL N +LA+GSAD+TV +
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 306
Query: 304 W 304
W
Sbjct: 307 W 307
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 247 SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL-INVGD--LLASGSADRTVRI 303
SL S D+ +++W+ ++ + + HT + CL N +LA+GSAD+TV +
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 308
Query: 304 W 304
W
Sbjct: 309 W 309
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 21/105 (20%)
Query: 235 STVNALALNGDGSLLFSGGCD-RWI----VVWERERDHRMVF-------AEALWGHTG-- 280
S++NA +GDGSL G D W+ V + V+ L GH G
Sbjct: 195 SSINAENHSGDGSL----GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPI 250
Query: 281 ALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPV 325
++L + LL S S D T+RIW G N C GH + +
Sbjct: 251 SVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY---GHSQSI 292
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 213 VVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE 262
+ H+ R + H + TL H S V LA DG L SGG D + +W+
Sbjct: 197 AIHHHDVRIANHQ-IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD 245
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 199 TGSADGRIRVWERS-------VVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFS 251
T SAD R+++W+ +D + +KS+ + + H VN L DG L +
Sbjct: 204 TASADSRVKLWDVRRASGCLITLDQHNGKKSQ-AVESANTAHNGKVNGLCFTSDGLHLLT 262
Query: 252 GGCDRWIVVW 261
G D + +W
Sbjct: 263 VGTDNRMRLW 272
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE---RERDHRMVFAEALWGHTGALL 283
V + H V L DG+ S D+ + +W+ E R V GH ++
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV------GHKSDVM 111
Query: 284 C--LINVGDLLASGSADRTVRIWQ-RGKENCYRCMAFLEGH 321
+ ++ SGS D+T+++W +G +C+A L GH
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVWTIKG-----QCLATLLGH 147
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 230 LVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261
+ H S +N L + DG+L+ S G D I++W
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE---RERDHRMVFAEALWGHTGALL 283
V + H V L DG+ S D+ + +W+ E R V GH ++
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV------GHKSDVM 111
Query: 284 C--LINVGDLLASGSADRTVRIWQ-RGKENCYRCMAFLEGH 321
+ ++ SGS D+T+++W +G +C+A L GH
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVWTIKG-----QCLATLLGH 147
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 230 LVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261
+ H S +N L + DG+L+ S G D I++W
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE---RERDHRMVFAEALWGHTGALL 283
V + H V L DG+ S D+ + +W+ E R V GH ++
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV------GHKSDVM 105
Query: 284 C--LINVGDLLASGSADRTVRIWQ-RGKENCYRCMAFLEGH 321
+ ++ SGS D+T+++W +G +C+A L GH
Sbjct: 106 SVDIDKKASMIISGSRDKTIKVWTIKG-----QCLATLLGH 141
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 230 LVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261
+ H S +N L + DG+L+ S G D I++W
Sbjct: 186 FIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE---RERDHRMVFAEALWGHTGALL 283
V + H V L DG+ S D+ + +W+ E R V GH ++
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV------GHKSDVM 111
Query: 284 C--LINVGDLLASGSADRTVRIWQ-RGKENCYRCMAFLEGH 321
+ ++ SGS D+T+++W +G +C+A L GH
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVWTIKG-----QCLATLLGH 147
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 230 LVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261
+ H S +N L + DG+L+ S G D I++W
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE---RERDHRMVFAEALWGHTGALL 283
V + H V L DG+ S D+ + +W+ E R V GH ++
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV------GHKSDVM 111
Query: 284 C--LINVGDLLASGSADRTVRIWQ-RGKENCYRCMAFLEGH 321
+ ++ SGS D+T+++W +G +C+A L GH
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVWTIKG-----QCLATLLGH 147
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 230 LVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261
+ H S +N L + DG+L+ S G D I++W
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 201 SADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVV 260
S D ++++W SV D + R TL+ HR+TV +A+ G + S D I +
Sbjct: 155 SQDMQLKIW--SVKDGSNPR--------TLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 204
Query: 261 WE 262
WE
Sbjct: 205 WE 206
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 201 SADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVV 260
S D ++++W SV D + R TL+ HR+TV +A+ G + S D I +
Sbjct: 158 SQDMQLKIW--SVKDGSNPR--------TLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 207
Query: 261 WE 262
WE
Sbjct: 208 WE 209
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG-SLLFSGGCDRW 257
+GS D + VWE + D R ++T L H V +A + ++L S GCD
Sbjct: 99 SGSEDCTVMVWE--IPDGGLVLPLREPVIT-LEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155
Query: 258 IVVWERERD----------HRMVFAEALWGHTGALLC 284
I+VW+ H W GAL+C
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 230 LVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261
+ H S +N L + DG+L+ S G D I +W
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 247 SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL-INVGD--LLASGSADRTVRI 303
SL S D+ +++W+ + + + HT + CL N +LA+GSAD+TV +
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 302
Query: 304 W 304
W
Sbjct: 303 W 303
>pdb|4F40|A Chain A, X-Ray Crystal Structure Of Apo Prostaglandin F Synthase
From Leishmania Major Friedlin
pdb|4F40|B Chain B, X-Ray Crystal Structure Of Apo Prostaglandin F Synthase
From Leishmania Major Friedlin
pdb|4G5D|A Chain A, X-Ray Crystal Structure Of Prostaglandin F Synthase From
Leishmania Major Friedlin Bound To Nadph
pdb|4G5D|B Chain B, X-Ray Crystal Structure Of Prostaglandin F Synthase From
Leishmania Major Friedlin Bound To Nadph
Length = 288
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 34/120 (28%)
Query: 55 LISDYSHVDT---FSND------LSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQH 105
L + Y H+DT + N+ L +SG + F TK++ Q + + SRQ
Sbjct: 45 LCAGYRHIDTAAIYKNEESVGAGLRASGVPREDVFITTKLWNTEQGYESTLAAFEESRQK 104
Query: 106 QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFK 165
L +Y+ L+L HW D++ K+G Y SW R+F+
Sbjct: 105 -----------------LGVDYID-------LYLIHWPRGKDILSKEGKKYLDSW-RAFE 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,740,324
Number of Sequences: 62578
Number of extensions: 346429
Number of successful extensions: 1293
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 338
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)